Effects of herbage removal on productivity of selected high-Sierra meadow community types

USGS Publications Warehouse

Stohlgren, Thomas J.; DeBenedetti, Steven H.; Parsons, David J.

1989-01-01

We investigated the effects of herbage removal on three subalpine meadow plant communities in the Rock Creek drainage of Sequoia National Park, California, USA. In the xeric Carex exserta Mkze. (short-hair sedge) type, annual aboveground productivity averaged 19 g/m2 in control plots (clipped once after plant senescence in late September) over a five-year period. Annual aboveground productivity was enhanced about 30%–35% when plots in this community type were clipped more frequently (i.e., “additional” herbage removal in the early, mid, and late seasons) during each of four treatment years but was reduced by 13%–19% during a fifth (recovery) year in which all but late September clipping was suspended. In a moderately mesic Eleocharis pauciflora (Lightf.) Link. (few-flowered spike rush)-Calamagrostis breweri Thurb. (short-hair grass) type, control plot productivity averaged 115 g/m2/yr and was reduced by 20–30% by the additional herbage removal. A more mesic Deschampsia caespitosa (L.) Beauv. (tufted hairgrass)-Carex rostrata Stokes, (beaked sedge) type had the greatest mean above-ground productivity (169 g/m2/yr) but also showed damage (i.e., decrease in productivity by 15%–20%) caused by the additional herbage removal. These data suggest that long-term, intensive herbage removal may be more detrimental to moderately mesic and mesic subalpine meadow community types than to xeric types.

Influence of nitrogen fertilization on tropical-grass silage assessed by ensiling process monitoring using chemical and microbial community analyses.

PubMed

Namihira, T; Shinzato, N; Akamine, H; Maekawa, H; Matsui, T

2010-06-01

Utilization of silage in livestock farming is expected to increase in developing countries in the tropical and subtropical parts of the world. The aim of this study was to investigate the influence of nitrogen fertilization on the chemical composition of herbage, ensiling process and silage quality, and to contribute to the improvement of tropical-grass silage preparation. Guinea grass grown under two different nitrogen-fertilizer application conditions [1.5 kg N a(-1) (high-N) and 0.5 kg N a(-1) (low-N)] was packed in plastic bags, and its ensiling process was investigated by chemical and microbial-community analyses. Relatively well-preserved silage was obtained from high-N herbage, which accumulated a high nitrate concentration. Denaturing gradient gel electrophoresis analysis revealed that Lactobacillus plantarum dominated throughout the ensiling of high-N herbage and in the early phase of that of low-N herbage. In low-N silages prepared from ammonium sulfate- and urea-fertilized herbage, Lact. plantarum was replaced by clostridia after 40 and 15 days of ensiling, respectively. Nitrate content of herbage is an important factor that influences silage quality, and careful fertilization management can facilitate stable and successful fermentation of tropical-grass silage without any pretreatment. The positive effect of nitrate on the ensiling process of tropical-grass was proved by microbial-community analysis.

A new electronic meter for measuring herbage yield

Treesearch

Donald L. Neal; Lee R. Neal

1965-01-01

A new electronic instrument, called the Heterodyne Vegetation Meter to measure herbage yield and utilization was built and tested. The instrument proved to be reliable and rapid. Further testing will be conducted.

Grazing management and supplementation effects on forage and dairy cow performance on cool-season pastures in the southeastern United States.

PubMed

Macoon, B; Sollenberger, L E; Staples, C R; Portier, K M; Fike, J H; Moore, J E

2011-08-01

Cool-season annual forages provide high-quality herbage for up to 5 mo in the US Gulf Coast states, but their management in pasture-based dairy systems has received little attention. Objectives of this study were to evaluate pasture and animal responses when lactating Holstein cows (n=32, mean DIM=184±21) grazed either N-fertilized rye (Secale cereale L.)-annual ryegrass (Lolium multiflorum Lam.) mixed pastures or rye-annual ryegrass-crimson clover (Trifolium incarnatum L.)-red clover (Trifolium pratense L.) pastures at 2 stocking rates (5 vs. 2.5 cows/ha) and 2 rates of concentrate supplementation [0.29 or 0.40 kg of supplement (as is)/kg of daily milk production]. Two cows paired by parity (one multiparous and one primiparous) were assigned randomly to each pasture. The 2 × 2 × 2 factorial arrangement of treatments was replicated twice in a completely randomized design. Forage mixture and supplementation rate did not affect milk production during three 28-d periods. Greater milk production occurred at the low (19.7 kg/d) than the high (14.7 kg/d) stocking rate during periods 2 and 3, but production was similar during period 1. Despite lower production per cow, milk production per hectare was generally greater at the high stocking rate (81.6 vs. 49.5 kg/ha). Generally, greater pregraze herbage mass on pastures at the lower stocking rate (1,400 vs. 1,150 kg/ha) accounted for greater herbage allowance. Both forage (8.0 vs. 5.9 kg/d) and total (14.1 vs. 11.6) organic matter intake were greater at the low stocking rate. Cows fed less supplement had greater forage organic matter intake (8.0 vs. 6.1 kg/d). Greater herbage mass was associated with the greater intake and subsequent greater milk production. Differences in forage nutritive value, blood metabolites and milk composition, although showing some response to treatments, may not be of sufficient magnitude to affect choice of pasture species or other management practices. Animal performance was not improved by adding clovers to mixed cool-season grass pastures like those in this study. Stocking rate had a major effect on pasture and animal performance. During the cool season, supplementation with concentrates should be planned based on estimated energy intake from forages to achieve optimum milk production and ensure maintenance of body condition. Copyright © 2011 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Effect of sprouted barley grain supplementation of an herbage-based or haylage-based diet on ruminal fermentation and methane output in continuous culture.

PubMed

Hafla, A N; Soder, K J; Brito, A F; Rubano, M D; Dell, C J

2014-12-01

A 4-unit dual-flow continuous-culture fermentor system was used to assess the effect of supplementing 7-d sprouted barley (SB) or barley grain (BG) with an herbage-based or haylage-based diet on nutrient digestibility, volatile fatty acid (VFA) profiles, bacterial protein synthesis, and methane (CH4) output. Treatments were randomly assigned to fermentors in a 4 × 4 Latin square design with a 2 × 2 factorial arrangement using 7 d for diet adaptation and 3 d for sample collection. Experimental diets were (1) 55.5 g of herbage dry matter (DM) + 4.5 g of SB DM, (2) 56.0 g of herbage DM + 4.0 g of BG DM, (3) 55.5 g of haylage DM + 4.5 g of SB DM, and (4) 56.0 g of haylage DM + 4.0 g of BG DM. Forages were fed at 0730, 1030, 1400, and 1900 h, whereas SB and BG were fed at 0730 and 1400 h. Gas samples for CH₄ analysis were collected at 0725, 0900, 1000, 1355, 1530, and 1630 h on d 8, 9, and 10. Fluid samples were taken once daily on d 8, 9, and 10 for pH measurements and for ammonia-N and VFA analysis and analyzed for DM, organic matter, crude protein, neutral detergent fiber, and acid detergent fiber for determination of nutrient digestibilities and estimation of bacterial protein synthesis. Orthogonal contrasts were used to compare the effect of forage source (haylage vs. herbage), supplement (BG vs. SB), and the forage × supplement interaction. Apparent and true DM and organic matter digestibilities as well as apparent crude protein digestibility were not affected by forage source. However, true DM digestibility was greatest for diets supplemented with SB. Apparent neutral and acid detergent fiber digestibilities of herbage-based diets were higher than haylage-based diets but fiber digestibility was not affected by supplement. Diets supplemented with SB had higher mean and minimum pH than BG; however, maximum pH was not affected by diet. Supplementation with BG produced a greater concentration of total VFA compared with diets supplemented with SB. Haylage-based diets produced greater CH4 output compared with herbage-based diets but supplementation did not affect CH4 output. Efficiency of bacterial protein synthesis was greater for herbage-based diets compared with haylage-based diets, with no effect of supplementation. Overall, supplementation with SB marginally increased true DM digestibility of herbage- and haylage-based diets but did not affect fiber and crude protein digestibilities, CH4 output, and bacterial efficiency, compared with BG. Copyright © 2014 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

e-Cow: an animal model that predicts herbage intake, milk yield and live weight change in dairy cows grazing temperate pastures, with and without supplementary feeding.

PubMed

Baudracco, J; Lopez-Villalobos, N; Holmes, C W; Comeron, E A; Macdonald, K A; Barry, T N; Friggens, N C

2012-06-01

This animal simulation model, named e-Cow, represents a single dairy cow at grazing. The model integrates algorithms from three previously published models: a model that predicts herbage dry matter (DM) intake by grazing dairy cows, a mammary gland model that predicts potential milk yield and a body lipid model that predicts genetically driven live weight (LW) and body condition score (BCS). Both nutritional and genetic drives are accounted for in the prediction of energy intake and its partitioning. The main inputs are herbage allowance (HA; kg DM offered/cow per day), metabolisable energy and NDF concentrations in herbage and supplements, supplements offered (kg DM/cow per day), type of pasture (ryegrass or lucerne), days in milk, days pregnant, lactation number, BCS and LW at calving, breed or strain of cow and genetic merit, that is, potential yields of milk, fat and protein. Separate equations are used to predict herbage intake, depending on the cutting heights at which HA is expressed. The e-Cow model is written in Visual Basic programming language within Microsoft Excel®. The model predicts whole-lactation performance of dairy cows on a daily basis, and the main outputs are the daily and annual DM intake, milk yield and changes in BCS and LW. In the e-Cow model, neither herbage DM intake nor milk yield or LW change are needed as inputs; instead, they are predicted by the e-Cow model. The e-Cow model was validated against experimental data for Holstein-Friesian cows with both North American (NA) and New Zealand (NZ) genetics grazing ryegrass-based pastures, with or without supplementary feeding and for three complete lactations, divided into weekly periods. The model was able to predict animal performance with satisfactory accuracy, with concordance correlation coefficients of 0.81, 0.76 and 0.62 for herbage DM intake, milk yield and LW change, respectively. Simulations performed with the model showed that it is sensitive to genotype by feeding environment interactions. The e-Cow model tended to overestimate the milk yield of NA genotype cows at low milk yields, while it underestimated the milk yield of NZ genotype cows at high milk yields. The approach used to define the potential milk yield of the cow and equations used to predict herbage DM intake make the model applicable for predictions in countries with temperate pastures.

Wildlife openings

Treesearch

William M. Healy

1989-01-01

Openings provide important feeding areas for forest wildlife because herbaceous vegetation grows much more abundantly in the open than beneath a forest canopy. Herbage (grasses and forbs) is generally more nutritious and digestible than woody plant growth. Herbage is important in the diet of deer, especially in late winter and early spring. Voles and rabbits use...

Steers performance in dwarf elephant grass pastures alone or mixed with Arachis pintoi.

PubMed

Crestani, Steben; Ribeiro Filho, Henrique Mendonça Nunes; Miguel, Marcolino Frederico; de Almeida, Edison Xavier; Santos, Flávio Augusto Portela

2013-08-01

The inclusion of legumes in pasture reduces the need for mineral nitrogen applications and the pollution of groundwater; however, the agronomic and animal husbandry advantages with tropical legumes are still little known. The objective of this study was to quantify the effect of the use of forage peanut (Arachis pintoi cv. Amarillo) in dwarf elephant grass pastures (Pennisetum purpureum cv. BRS Kurumi) on forage intake and animal performance. The experimental treatments were dwarf elephant grass fertilized with 200 kg N/ha, and dwarf elephant grass mixed with forage peanut without mineral fertilizers. The animals used for the experiment were 12 Charolais steers (body weight (BW) = 288 ± 5.2 kg) divided into four lots (two per treatment). Pastures were managed under intermittent stocking with an herbage allowance of 5.4 kg dry matter of green leaves/100 kg BW. Dry matter intake (mean = 2.44% BW), the average daily gain (mean = 0.76 kg), and the stocking rate (mean = 3.8 AU/ha) were similar between the studied pastures, but decreased drastically in last grazing cycle with the same herbage allowance. The presence of peanut in dwarf elephant grass pastures was enough to sustain the stocking rate, but did not allow increasing forage intake and animal performance.

Mesquite removal and mulching treatment impacts on herbage production and selected soil chemical properties

Treesearch

Stacy Pease; Peter F. Ffolliott; Leonard F. DeBano; Gerald J. Gottfried

2003-01-01

Determining the effects of mesquite (Prosopis velutina) overstory removal, posttreatment control of sprouting, and mulching treatments on herbage production (standing biomass) and selected soil chemical properties on the Santa Rita Experimental Range were the objectives of this study. Mesquite control consisted of complete overstory removals with and without the...

Herbage intake, methane emissions and animal performance of steers grazing dwarf elephant grass v. dwarf elephant grass and peanut pastures.

PubMed

Andrade, E A; Almeida, E X; Raupp, G T; Miguel, M F; de Liz, D M; Carvalho, P C F; Bayer, C; Ribeiro-Filho, H M N

2016-10-01

Management strategies for increasing ruminant legume consumption and mitigating methane emissions from tropical livestock production systems require further study. The aim of this work was to evaluate the herbage intake, animal performance and enteric methane emissions of cattle grazing dwarf elephant grass (DEG) (Pennisetum purpureum cv. BRS Kurumi) alone or DEG with peanut (Arachis pintoi cv. Amarillo). The experimental treatments were the following: DEG pastures receiving nitrogen fertilization (150 kg N/ha as ammonium nitrate) and DEG intercropped with peanut plus an adjacent area of peanut that was accessible to grazing animals for 5 h/day (from 0700 to 1200 h). The animals grazing legume pastures showed greater average daily gain and herbage intake, and shorter morning and total grazing times. Daily methane emissions were greater from the animals grazing legume pastures, whereas methane emissions per unit of herbage intake did not differ between treatments. Allowing animals access to an exclusive area of legumes in a tropical grass-pasture-based system can improve animal performance without increasing methane production per kg of dry matter intake.

Effect of time of maize silage supplementation on herbage intake, milk production, and nitrogen excretion of grazing dairy cows.

PubMed

Al-Marashdeh, O; Gregorini, P; Edwards, G R

2016-09-01

The objective of this study was to evaluate the effect of feeding maize silage at different times before a short grazing bout on dry matter (DM) intake, milk production, and N excretion of dairy cows. Thirty-six Friesian × Jersey crossbred lactating dairy cows were blocked in 9groups of 4 cows by milk solids (sum of protein and fat) production (1.26±0.25kg/d), body weight (466±65kg), body condition score (4±0.48), and days in milk (197±15). Groups were then randomly assigned to 1 of 3 replicates of 3 treatments: control; herbage only, supplemented with 3kg of DM/cow of maize silage after morning milking approximately 9h before pasture allocation (9BH); and supplemented with 3kg of DM/cow of maize silage before afternoon milking approximately 2h before pasture allocation (2BH). Herbage allowance (above the ground level) was 22kg of DM/cow per day for all groups of cows. Cows were allocated to pasture from 1530 to 2030 h. Maize silage DM intake did not differ between treatments, averaging 3kg of DM/cow per day. Herbage DM intake was greater for control than 2BH and 9BH, and greater for 9BH than 2BH (11.1, 10.1, and 10.9kg of DM/cow per day for control, 2BH, and 9BH, respectively). The substitution rate (kilograms of herbage DM per kilograms of maize silage DM) was greater for 2BH (0.47) than 9BH (0.19). Milk solids production was similar between treatments (overall mean 1.2kg/cow per day). Body weight loss tended to be less for supplemented than control cows (-0.95, -0.44, and -0.58kg/cow per day for control, 2BH, and 9BH, respectively). Nitrogen concentration in urine was not affected by supplementation or time of supplementation, but estimated urinary N excretion tended to be greater for control than supplemented cows when urinary N excretion estimated using plasma or milk urea N. At the time of herbage meal, nonesterified fatty acid concentration was greater for control than supplemented cows and greater for 9BH than 2BH (0.58, 0.14, and 0.26mmol/L for control, 2BH, and 9BH, respectively). Timing of maize silage supplementation relative to a short and intensive herbage meal can reduce the substitution rate and increase herbage DM intake of grazing dairy cows. Copyright © 2016 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Stable isotopes to discriminate lambs fed herbage or concentrate both obtained from C(3) plants.

PubMed

Moreno-Rojas, Jose M; Vasta, Valentina; Lanza, Alfio; Luciano, Giuseppe; Ladroue, Virginie; Guillou, Claude; Priolo, Alessandro

2008-12-01

This study was aimed at determining whether isotopic ratio mass spectrometry (IRMS) enables us to discriminate between lambs fed herbage or concentrate, both obtained from C(3) plants, and those fed a concentrate obtained from C(4) plants. Thirty-four Comisana male lambs (age 45 days) were assigned to three feeding treatments. Fourteen lambs were fed vetch (Vicia sativa) ad libitum. Another fourteen lambs received a barley-based concentrate. The remaining six lambs were fed a maize-based concentrate. After 60 days of experimental treatment the animals were slaughtered and the wool, perirenal fat and muscle longissimus dorsi were sampled. The delta(13)C and delta(15)N values of the muscle, wool and feed were measured by continuous flow elemental analysis (CF-EA)-IRMS. The delta(13)C of the fat was determined likewise. The isotopic composition of the tissues reflected that of the three diets. For the lambs which were fed herbage the muscle delta(13)C values were higher (P < 0.0005) and delta(15)N values were lower (P < 0.0005) than those of the lambs receiving concentrates. The delta(15)N and delta(13)C values in the muscle and delta(13)C values in the adipose tissue allowed perfect discrimination between the lambs fed the three different diets. The regression between the delta(13)C values measured in muscle and in wool of lambs was linear (R(2) = 0.99; P < 0.0005). This result shows that delta(13)C measured in the wool can predict muscle delta(13)C distribution, suggesting that wool is a valuable matrix for meat authentication.

Effect of incremental flaxseed supplementation of an herbage diet on methane output and ruminal fermentation in continuous culture

USDA-ARS?s Scientific Manuscript database

A 4-unit dual-flow continuous culture fermentor system was used to assess the effect of increasing flax supplementation of an herbage-based diet on nutrient digestibility, bacterial N synthesis and methane output. Treatments were randomly assigned to fermentors in a 4 x 4 Latin square design with 7 ...

Nitrous oxide emissions and herbage accumulation in smooth bromegrass pastures with nitrogen fertilizer and ruminant urine application

USDA-ARS?s Scientific Manuscript database

Agricultural soils contribute significantly to nitrous oxide (N2O) emissions, but little data is available on N2O emissions from smooth bromegrass (Bromus inermis Leyss.) pastures. This study evaluated soil N2O emissions and herbage accumulation from smooth bromegrass pasture in eastern Nebraska, US...

Effects of mesquite control and mulching treatments on herbage production on semiarid shrub-grasslands

Treesearch

Stacy Pease; Peter F. Ffolliott; Leonard F. DeBano; Gerald J. Gottfried

2000-01-01

Effects of complete removal of mesquite overstory, complete removal of mesquite overstory with control of post-treatment sprouts, and retention of the mesquite overstory as a control on herbage production are described. Mulching treatments included applications of a chip mulch, a commercial compost, lopped-and-scattered mesquite branchwood, and an untreated control....

Short communication: effect of oilseed supplementation of an herbage diet on ruminal fermentation in continuous culture

USDA-ARS?s Scientific Manuscript database

A four-unit continuous culture fermentor system was used to evaluate the effects of oilseed supplementation of an herbage-based diet on ruminal fermentation. Treatments were randomly assigned to fermentors in a 4 x 4 Latin square design with 7 d for diet adaptation and 3 d for data and sample collec...

Monitoring with a modified Robel pole on meadows in the central Black Hills of South Dakaota

Treesearch

Daniel W. Uresk; Ted A. Benzon

2007-01-01

This study using a modified Robel pole was conducted in the central Black Hills, South Dakota. The objectives were to test the relationship between visual obstruction readings and standing herbage, develop guidelines for monitoring, and estimate sample size. The relationship between visual obstruction and standing herbage was linear with 2 segments in a piecewise model...

Forage production after hardwood control in a southern pine-hardwood stand

Treesearch

Robert M. Blair

1971-01-01

After hardwoods were removed from an all-aged pine-hardwood stand in central Louisiana, herbage available in late summer increased for 2 to 4 years, then declined rapidly as the density and growth of pine seedlings increased. Browse production increased for 6 to 8 years, but together with herbage produciton returned to pretreatment levels within 10 years. Competition...

Effect of sprouted barley grain supplementation of an herbage-based or haylage-based diet on ruminal fermentation and methane output in continuous culture

USDA-ARS?s Scientific Manuscript database

A 4-unit dual-flow continuous culture fermentor system was used to assess the effect of supplementing 7-d sprouted barley (SB) or barley grain (BG) with an herbage-based or haylage-based diet on nutrient digestibility, volatile fatty acid (VFA) profiles, bacterial protein synthesis, and methane outp...

The potential interaction between ewe body condition score and nutrition during very late pregnancy and lactation on the performance of twin-bearing ewes and their lambs

PubMed Central

Cranston, L. M.; Kenyon, P. R.; Corner-Thomas, R. A.; Morris, S. T.

2017-01-01

Objective The present study aimed to determine the impact of ewe body condition score (BCS) (over a range of 2.0 to 3.0) and nutritional treatments (consisting of differing herbage masses) during very late pregnancy and lactation and their potential interaction on the performance of twin-bearing ewes and their lambs to weaning. Methods On day 142 of pregnancy, twin-bearing ewes with a BCS of 2.0, 2.5, or 3.0 were allocated to a “Moderate’ or ‘Unrestricted’ nutritional treatment until day 95 of lactation (weaning). The nutritional treatments aimed to achieve average herbage masses of 1,200 to 1,300 kg dry matter (DM)/ha (Moderate) and 1,500 to 1,800 kg DM/ha (Unrestricted). Results There were no three-way interactions between ewe BCS group, nutritional treatment and time for any ewe or lamb parameter. The nutritional treatments had no effect (p>0.05) on lamb birth or weaning weight. Lambs born to Moderate ewes had greater survival and total litter weight at weaning (p<0.05). Regardless of BCS group, Unrestricted treatment ewes had greater body condition and back-fat depth at weaning than Moderate treatment ewes (p<0.05). Ewes of BCS 2.0 group reared lighter lambs to weaning (p<0.05) and tended to have a lower total litter weight (p = 0.06) than BCS 3.0 group ewes. Conclusion This study suggests farmers should aim to have all ewes with a BCS of 2.5 or 3 in late pregnancy for optimal lamb weaning performance. Furthermore, there is no benefit to lamb production of offering ewes pasture masses >1,200 kg DM/ha during very late pregnancy and lactation. PMID:28231701

The potential interaction between ewe body condition score and nutrition during very late pregnancy and lactation on the performance of twin-bearing ewes and their lambs.

PubMed

Cranston, L M; Kenyon, P R; Corner-Thomas, R A; Morris, S T

2017-09-01

The present study aimed to determine the impact of ewe body condition score (BCS) (over a range of 2.0 to 3.0) and nutritional treatments (consisting of differing herbage masses) during very late pregnancy and lactation and their potential interaction on the performance of twin-bearing ewes and their lambs to weaning. On day 142 of pregnancy, twin-bearing ewes with a BCS of 2.0, 2.5, or 3.0 were allocated to a "Moderate' or 'Unrestricted' nutritional treatment until day 95 of lactation (weaning). The nutritional treatments aimed to achieve average herbage masses of 1,200 to 1,300 kg dry matter (DM)/ha (Moderate) and 1,500 to 1,800 kg DM/ha (Unrestricted). There were no three-way interactions between ewe BCS group, nutritional treatment and time for any ewe or lamb parameter. The nutritional treatments had no effect (p>0.05) on lamb birth or weaning weight. Lambs born to Moderate ewes had greater survival and total litter weight at weaning (p<0.05). Regardless of BCS group, Unrestricted treatment ewes had greater body condition and back-fat depth at weaning than Moderate treatment ewes (p<0.05). Ewes of BCS 2.0 group reared lighter lambs to weaning (p<0.05) and tended to have a lower total litter weight (p = 0.06) than BCS 3.0 group ewes. This study suggests farmers should aim to have all ewes with a BCS of 2.5 or 3 in late pregnancy for optimal lamb weaning performance. Furthermore, there is no benefit to lamb production of offering ewes pasture masses >1,200 kg DM/ha during very late pregnancy and lactation.

Effect of supplementing orchardgrass herbage with a total mixed ration or flaxseed fermentation profile and bacterial protein synthesis in continuous culture

USDA-ARS?s Scientific Manuscript database

A 4-unit dual-flow continuous culture fermentor system was used to evaluate the effects of herbage, a total mixed ration (TMR) and flaxseed on nutrient digestibility and microbial N synthesis. Treatments were randomly assigned to fermentors in a 4 x 4 Latin square design. Each fermentor was fed a to...

Uses and capabilities of electronic capacitance instruments for estimating standing herbage

Treesearch

P. O. Currie; M. J. Morris; D. L. Neal

1973-01-01

An electronic capacitance meter was used to estimate herbage yield from sown ranges in western USA. On an area in Arizona where the grass stand had been sown broadcast, ^a r2 of 0-47 was obtained between the meter value and oven-dry weight estimate. Excluding those plots with very large amounts of standing dead organic matter (OM), or very succulent plants...

Number of pins in two-stage stratified sampling for estimating herbage yield

Treesearch

William G. O' Regan; C. Eugene Conrad

1975-01-01

In a two-stage stratified procedure for sampling herbage yield, plots are stratified by a pin frame in stage one, and clipped. In stage two, clippings from selected plots are sorted, dried, and weighed. Sample size and distribution of plots between the two stages are determined by equations. A way to compute the effect of number of pins on the variance of estimated...

Monitoring Idaho fescue grasslands in the Big Horn Mountains, Wyoming, with a modified robel pole

Treesearch

Daniel W. Uresk; Thomas M. Juntti

2008-01-01

The reliability of monitoring visual obstruction and estimating standing herbage with a modified Robel pole was examined for high-elevation meadows in sedimentary soils on the Bighorn National Forest, Wyoming. Our objectives were to (1) test a modified pole graduated with 1.27-cm (0.5-inch) bands for estimating standing herbage based on linear regression of visual...

Influence of Phenological Stages on Yield and Quality of Oregano (Origanum vulgare L.) Under the Agroclimatic Condition of Doon Valley (Uttarakhand)

PubMed Central

Chauhan, N. K.; Singh, S.; Haider, S. Z.; Lohani, H.

2013-01-01

A field experiment was conducted under the agroclimatic conditions of Doon valley, in order to determine the effects of phenological stages on herbage yield and quality of oil in oregano (Origanum vulgare L.). Plants were harvested in five phenological stages, i.e. early vegetative, late vegetative, flower initiation, full bloom, and fruit set stages. Results showed the significant effects of phenological stages on herbage, yield, and quality of oregano. Harvesting at full bloom stage showed better results in terms of herbage and oil yield. The quality of essential oil was evaluated using GC and GC/MS. Thymol content was rich in all the stages (46.90-62.26%) followed by γ-terpinene (1.11-11.75%) and p-cymene (3.11-5.32%). PMID:24302806

Effect of increased concentrate allotment before evening grazing on herbage intake, nitrogen utilization and rumen fermentation in dairy cows grazed on perennial ryegrass pasture.

PubMed

Ueda, Koichiro; Mitani, Tomohiro; Kondo, Seiji

2016-10-01

Two experiments were conducted to elucidate the effect of increased concentrate allotment before evening grazing on herbage intake, nitrogen utilization and rumen fermentation in dairy cows. In experiment 1, nine lactating cows were grazed in the morning and evening sessions (2.5 h each). The cows were allocated to treatments of three concentrate allotment levels before the evening grazing session by altering proportions to daily total offered; 25%, 50% and 75%. Daily herbage dry matter intake quadratically decreased with increasing the concentrate allotment levels (P < 0.05). Nitrogen utilization was similar among treatments. To investigate diurnal changes in rumen fermentation, a second experiment was conducted where six ruminally cannulated non-lactating dairy cows grazed in the morning and evening sessions (3 h each) were subjected to the same treatments as experiment 1. Total volatile fatty acid concentration in the rumen linearly increased with increasing the concentrate allotment levels throughout the pre-evening grazing session to the post-morning grazing session (P < 0.01). The results indicate that dairy cows reduce daily herbage intake but do not alter nitrogen utilization with increasing concentrate allotment before evening grazing. © 2016 Japanese Society of Animal Science. © 2016 Japanese Society of Animal Science.

Association of SNP of neuropeptide Y, leptin, and IGF-1 genes with residual feed intake in confinement and under grazing condition in Angus cattle.

PubMed

Trujillo, A I; Casal, A; Peñagaricano, F; Carriquiry, M; Chilibroste, P

2013-09-01

In this study we quantify and compare the phenotypic variation in residual feed intake (RFI) in 2 groups of Angus female calves: one carrying simultaneously putative favorable allelic variants (SNP) of neuropeptide Y, leptin, and IGF-1 genes (VAL group) and another devoid of such alleles (CON group). We performed 2 sequential trials: under confinement feeding a high-concentrate diet and under grazing condition. In confinement, 38 purebred Angus female calves [mean age and BW of 247 d (SD = 15) and 186 kg (SD = 33.2), respectively] were offered a total mixed ration diet (60:40 concentrate: alfalfa hay, as fed) ad libitum during 57 d. Dry matter intake was estimated from the difference between offered and refused feed; BW was recorded every 2 wk. Under grazing, 12 heifers from each group were ranked by BW and RFI and randomly assigned to 4 pasture paddocks. Heifers were continuously stocked at high-quality, high-herbage-mass mixed pasture. Herbage DMI was determined using the n-alkane technique. Different models were used to determine RFI: models that use phenotypic data [RFI as described by Koch et al. (1963; RFIK) and RFI as described by ME (RFIME)] and models that use standards feeding data [RFI estimated by Fan et al. (1995; RFIF) and RFI in which the expected DMI was derived from equations in Standing Committee on Agriculture (1990; RFISCA)]. Least squares mean values (SE) of DMI (kg/d), metabolizable energy intake (MEI; Mcal/d), ADG (kg), RFIK (kg DM/d), and feed conversion ratio (FCR; kg DMI/kg ADG) for VAL and CON genotype groups were 6.65 and 6.89 (0.49), 16.7 and 17.4 (1.44), 1.24 and 1.24 (0.03), -0.11 and 0.11 (0.09), and 5.8 and 5.8 (0.14), respectively, in the confinement trial. In the grazing trial least squares mean values (SE) of herbage DMI (kg/d), ADG (kg), MEI (Mcal/d), RFIK, and FCR of VAL and CON groups were 8.76 and 10.93 (0.71), 1.4 and 1.37 (0.05), 25.5 and 31.7 (2.09), -1.02 and 1.02 (0.42), and 6.41 and 6.96 (0.46), respectively. Genotyped groups tended to differ in DMI (P = 0.10), in MEI (P = 0.06), and in RFIK (P = 0.10), differed in RFIF (P = 0.010), and did not differ in ADG or FCR during confinement. During grazing, genotyped groups differed in DMI (P = 0.005), in MEI (P = 0.006), and in RFIK (P = 0.002) but did not differ in ADG and FCR. Our results demonstrate a strong association between these 3 SNP and RFI when animals were grazing on a high-quality, high-availability pasture, whereas a weak effect was observed under confinement.

Measuring larval nematode contamination on cattle pastures: Comparing two herbage sampling methods.

PubMed

Verschave, S H; Levecke, B; Duchateau, L; Vercruysse, J; Charlier, J

2015-06-15

Assessing levels of pasture larval contamination is frequently used to study the population dynamics of the free-living stages of parasitic nematodes of livestock. Direct quantification of infective larvae (L3) on herbage is the most applied method to measure pasture larval contamination. However, herbage collection remains labour intensive and there is a lack of studies addressing the variation induced by the sampling method and the required sample size. The aim of this study was (1) to compare two different sampling methods in terms of pasture larval count results and time required to sample, (2) to assess the amount of variation in larval counts at the level of sample plot, pasture and season, respectively and (3) to calculate the required sample size to assess pasture larval contamination with a predefined precision using random plots across pasture. Eight young stock pastures of different commercial dairy herds were sampled in three consecutive seasons during the grazing season (spring, summer and autumn). On each pasture, herbage samples were collected through both a double-crossed W-transect with samples taken every 10 steps (method 1) and four random located plots of 0.16 m(2) with collection of all herbage within the plot (method 2). The average (± standard deviation (SD)) pasture larval contamination using sampling methods 1 and 2 was 325 (± 479) and 305 (± 444)L3/kg dry herbage (DH), respectively. Large discrepancies in pasture larval counts of the same pasture and season were often seen between methods, but no significant difference (P = 0.38) in larval counts between methods was found. Less time was required to collect samples with method 2. This difference in collection time between methods was most pronounced for pastures with a surface area larger than 1 ha. The variation in pasture larval counts from samples generated by random plot sampling was mainly due to the repeated measurements on the same pasture in the same season (residual variance component = 6.2), rather than due to pasture (variance component = 0.55) or season (variance component = 0.15). Using the observed distribution of L3, the required sample size (i.e. number of plots per pasture) for sampling a pasture through random plots with a particular precision was simulated. A higher relative precision was acquired when estimating PLC on pastures with a high larval contamination and a low level of aggregation compared to pastures with a low larval contamination when the same sample size was applied. In the future, herbage sampling through random plots across pasture (method 2) seems a promising method to develop further as no significant difference in counts between the methods was found and this method was less time consuming. Copyright © 2015 Elsevier B.V. All rights reserved.

Effect of stocking rate and supplementation on performance of dairy cows grazing native grassland in small-scale systems in the highlands of central Mexico.

PubMed

Sainz-Sánchez, Pedro Alan; López-González, Felipe; Estrada-Flores, Julieta Gertrudis; Martínez-García, Carlos Galdino; Arriaga-Jordán, Carlos Manuel

2017-01-01

The use and management of native grassland for dairy production during the rainy season was studied on two small-scale dairy farms in the highlands of central Mexico. Two stocking rates (2 and 4 cows/ha) and two levels of supplementation with commercial concentrate (4 and 6 kg/cow/day) under grazing were given to 12 milking Holstein cows in a 4 × 4 Latin square design replicated three times in a factorial arrangement. Net herbage accumulation (NHA), sward height, chemical composition, and in vitro digestibility of organic matter were recorded for the grassland, as well as vegetation cover and herbage mass 12 weeks post experiment. Animal performance variables were milk yield and composition, live weight, and body condition score. A partial budget analysis of feeding costs, returns, and margins was calculated. There were no differences between periods for NHA and herbage height and between plots for chemical composition (P > 0.05). However, there were highly significant differences among periods (P < 0.01) for organic matter, neutral detergent fibre (NDF), acid detergent fibre, in vitro organic matter digestibility (IVOMD), and estimated metabolisable energy (eME), with highly significant plot × period interactions (P < 0.01) for NDF, IVOMD, and eME. There were no statistical differences (P > 0.05) between treatments for milk yield, chemical composition of milk, live weight, or body condition score. Post-experimental vegetation cover was 72 % for both stocking rates, indicating there was no degradation of the grassland. Lower feeding costs were for the low supplementation treatments. It is concluded that a high stocking rate in studied native grasslands of 4 cows/ha with moderate concentrate supplementation supports a mean milk yield of 11.9 kg/cow/day during the rainy season without deleterious effects on the grassland.

Seasonal and interannual variations in feeding station behavior of cattle: effects of sward and meteorological conditions.

PubMed

Hirata, M; Matsumoto, Y; Izumi, S; Soga, Y; Hirota, F; Tobisa, M

2015-04-01

A feeding station is the area of forage a grazing animal can reach without moving its forefeet. Grazing behavior can be divided into residence within feeding stations (with bites as benefits) and movement between feeding stations (with steps as costs). However, relatively little information has been reported on how grazing animals modify their feeding station behavior seasonally and interannually in response to varying environmental conditions. The feeding station behavior of beef cows (Japanese Black) stocked on a tropical grass pasture (bahiagrass dominant) was monitored for 4 years (2010 to 2013) in order to investigate the association of feeding station behavior with meteorological and sward conditions across the seasons and years. Mean air temperature during stocking often exceeded 30°C during summer months. A severe summer drought in 2013 decreased herbage mass and sward height of the pasture and increased nitrogen concentration of herbage from summer to autumn. A markedly high feeding station number per unit foraging time, low bite numbers per feeding station and a low bite rate were observed in summer 2013 compared with the other seasons and years. Bite number per feeding station was explained by a multiple regression equation, where sward height and dry matter digestibility of herbage had a positive effect, whereas air temperature during stocking had a negative effect (R 2=0.658, P<0.01). Feeding station number per minute was negatively correlated with bite number per feeding station (r=-0.838, P<0.001). It was interpreted that cows modified bite number per feeding station in response to the sward and meteorological conditions, and this largely determined the number of feeding stations the animals visited per minute. The results indicate potential value of bite number per feeding station as an indicator of daily intake in grazing animals, and an opportunity for livestock and pasture managers to control feeding station behavior of animals through managements (e.g. fertilizer application, manipulation of stocking intensity and stocking time within the day).

Herbage intake and ruminal digestion of dairy cows grazed on perennial ryegrass pasture either in the morning or evening.

PubMed

Ueda, Koichiro; Mitani, Tomohiro; Kondo, Seiji

2016-08-01

This study aimed to clarify diurnal fluctuations of herbage intake, ruminal fermentation of herbage carbohydrates and proteins, and digesta particulate weight in the rumen of grazing dairy cows. Six ruminally cannulated, non-lactating dairy cows were grazed on perennial ryegrass/white clover pasture either in the morning (04.00 to 08.00 hours) or the evening (16.00 to 20.00 hours). Cows grazed in the evening spent more time (P < 0.01) and consumed more herbage (P < 0.01) compared with cows grazed in the morning. Higher (P < 0.05) daily mean concentrations of total volatile fatty acid, propionate and n-butyrate in rumen fluid were observed for cows grazed in the evening compared with cows grazed in the morning. Although cows grazed in the evening ingested more crude protein compared with cows grazed in the morning, no significant difference in NH3 -N concentration in rumen fluid was observed between them. The ratio of purine-derivative concentration to creatinine concentrations was higher (P < 0.01) in the urine of cows grazed in the evening than in cows grazed in the morning. These results clearly indicated that evening grazing was advantageous for dairy cows compared with morning grazing, in terms of ruminal fermentable energy intake and nitrogen utilization efficiency. © 2015 Japanese Society of Animal Science.

Effect of continuous v. daytime grazing on feed intake and growth of sheep grazing in a semi-arid grassland steppe.

PubMed

Müller, K; Lin, L; Wang, C; Glindemann, T; Schiborra, A; Schönbach, P; Wan, H; Dickhoefer, U; Susenbeth, A

2012-03-01

In the Inner Mongolian steppe, China, sheep generally graze during daytime and are kept in yards overnight. Hence, nutrients are not returned to the grassland, which might reduce its long-term productivity. Furthermore, the restricted grazing time may limit forage intake and thus the performance of sheep. The aim of this study was therefore to evaluate the impact of continuous 24-h grazing (CG) v. the common daytime grazing (DG) on herbage mass (HM), feed quality, feed organic matter intake (OMI) and live weight gain (LWG) of sheep in the Inner Mongolian steppe. Experiments were carried out from July to September, between 2005 and 2007 on two 2-ha plots per grazing treatment. Each month, the external faecal marker titanium dioxide (TiO(2)) was orally administered to six sheep per plot on 10 consecutive days. Faecal grab samples were obtained from day 6 to 10 and analysed for CP concentrations to estimate digestibility of organic matter (dOM). Faecal TiO(2) concentrations were used to determine the total faecal output and hence OMI of sheep. Concomitant to faeces collection, HM and quality, as well as LWG of the animals were measured. HM and herbage quality did not differ between treatments. However, as the season progressed, concentrations of NDF, ADF and ADL increased, whereas HM and CP concentrations declined. HM and herbage quality parameters differed between years according to the annual precipitation. dOM was similar in CG (0.577) and DG (0.572) sheep, but it decreased from July (0.583) to September (0.558) and differed between years. Accordingly, the OMI of sheep was similar for both treatments across the entire grazing season and all study years. Although mean LWG differed between months and years, it was identical in CG (101.5 g/day) and DG sheep (101.8 g/day). Additional time on pasture during night does not increase feed intake or animal performance. Positive effects of a nutrient reflux on grassland productivity and herbage quality when animals remained on the plots overnight were not found, most likely because of the fact that sheep crowded together in one corner of the plots during darkness and faecal and urinary excretions were thus not evenly distributed across the entire pasture. Considering the risk of animal theft as well as the importance of sheep manure as fuel, the common penning of sheep at night seems to be an adequate management practice for pastoralists in the Inner Mongolian steppe.

The status and importance of crude protein and macro minerals in native pastures growing on Vertisols of the central highlands of Ethiopia.

PubMed

Gizachew, Lemma; Smit, G N

2012-01-01

The effects of pasture management, season and soil nutrient status on crude protein (CP) and macro mineral concentration of native pasture was studied in the Vertisol areas of the central Ethiopian highland. Soil and herbage samples from 18 continuously grazed (CG) and 12 seasonally grazed (SG) pasture sites were analyzed for N, P, Ca, Mg, K and Na. Soil and dry season CG pasture samples were collected in January and February 2001 (dry season: November-February), while wet season CG and SG pasture samples were collected during September 2001 (wet season: April-October). The Potassium concentration (2.55%) of mixed herbage samples from SG pasture exceeded the K values (1.80%) from CG pasture (P < 0.01). Significant (P < 0.01) differences of CP and macro minerals concentrations were noted among forage species. The mean CP and K concentrations of herbage from CG pasture were higher (P < 0.01) during the wet than during the dry season (5.97 and 1.80% vs. 3.18 and 0.79%), while the opposite was true for Ca (0.49% vs. 0.61%) (P < 0.05). Regarding soil macro minerals and the corresponding herbage macro mineral concentrations, significant (P < 0.05) but inconsistent correlations were found for Ca, P, Mg and Na. The results suggest that pasture management, season and to some extend soil nutrient status, can affect herbage CP and macro mineral composition. The levels of CP in CG pasture and that of P and Na in both CG and SG pastures may fall below the requirements of grazing livestock. Resting at critical stages of the growth cycle of the forage species encouraged the recovery of desirable species. For this reason resting of pasture can contribute significantly to the quality of the native pastures of the Vertisols of the central Ethiopian highlands and should be encouraged. Copyright © 2011 Elsevier Ltd. All rights reserved.

Bale Location Effects on Nutritive Value and Fermentation Characteristics of Annual Ryegrass Bale Stored in In-line Wrapping Silage

PubMed Central

Han, K. J.; McCormick, M. E.; Derouen, S. M.; Blouin, D. C.

2014-01-01

In southeastern regions of the US, herbage systems are primarily based on grazing or hay feeding with low nutritive value warm-season perennial grasses. Nutritious herbage such as annual ryegrass (Lolium multiflorum Lam.) may be more suitable for preserving as baleage for winter feeding even with more intensive production inputs. Emerging in-line wrapped baleage storage systems featuring rapid wrapping and low polyethylene film requirements need to be tested for consistency of storing nutritive value of a range of annual ryegrass herbage. A ryegrass storage trial was conducted with 24-h wilted ‘Marshall’ annual ryegrass harvested at booting, heading and anthesis stages using three replicated in-line wrapped tubes containing ten round bales per tube. After a six-month storage period, nutritive value changes and fermentation end products differed significantly by harvest stage but not by bale location. Although wilted annual ryegrass exhibited a restricted fermentation across harvest stages characterized by high pH and low fermentation end product concentrations, butyric acid concentrations were less than 1 g/kg dry matter, and lactic acid was the major organic acid in the bales. Mold coverage and bale aroma did not differ substantially with harvest stage or bale location. Booting and heading stage-harvested ryegrass baleage were superior in nutritive value to anthesis stage-harvested herbage. Based on the investigated nutritive value and fermentation characteristics, individual bale location within in-line tubes did not significantly affect preservation quality of ryegrass round bale silages. PMID:25178371

Bale Location Effects on Nutritive Value and Fermentation Characteristics of Annual Ryegrass Bale Stored in In-line Wrapping Silage.

PubMed

Han, K J; McCormick, M E; Derouen, S M; Blouin, D C

2014-09-01

In southeastern regions of the US, herbage systems are primarily based on grazing or hay feeding with low nutritive value warm-season perennial grasses. Nutritious herbage such as annual ryegrass (Lolium multiflorum Lam.) may be more suitable for preserving as baleage for winter feeding even with more intensive production inputs. Emerging in-line wrapped baleage storage systems featuring rapid wrapping and low polyethylene film requirements need to be tested for consistency of storing nutritive value of a range of annual ryegrass herbage. A ryegrass storage trial was conducted with 24-h wilted 'Marshall' annual ryegrass harvested at booting, heading and anthesis stages using three replicated in-line wrapped tubes containing ten round bales per tube. After a six-month storage period, nutritive value changes and fermentation end products differed significantly by harvest stage but not by bale location. Although wilted annual ryegrass exhibited a restricted fermentation across harvest stages characterized by high pH and low fermentation end product concentrations, butyric acid concentrations were less than 1 g/kg dry matter, and lactic acid was the major organic acid in the bales. Mold coverage and bale aroma did not differ substantially with harvest stage or bale location. Booting and heading stage-harvested ryegrass baleage were superior in nutritive value to anthesis stage-harvested herbage. Based on the investigated nutritive value and fermentation characteristics, individual bale location within in-line tubes did not significantly affect preservation quality of ryegrass round bale silages.

Comparison of two techniques used for the recovery of third-stage strongylid nematode larvae from herbage.

PubMed

Krecek, R C; Maingi, N

2004-07-14

A laboratory trial to determine the efficacy of two methods in recovering known numbers of third-stage (L3) strongylid nematode larvae from herbage was carried out. Herbage samples consisting almost entirely of star grass (Cynodon aethiopicus) that had no L3 nematode parasitic larvae were collected at Onderstepoort, South Africa. Two hundred grams samples were placed in fibreglass fly gauze bags and seeded with third-stage strongylid nematode larvae at 11 different levels of herbage infectivity ranging from 50 to 8000 L3/kg. Eight replicates were prepared for each of the 11 levels of herbage infectivity. Four of these were processed using a modified automatic Speed Queen heavy-duty washing machine at a regular normal cycle, followed by isolation of larvae through centrifugation-flotation in saturated sugar solution. Larvae in the other four samples were recovered after soaking the herbage in water overnight and the larvae isolated with the Baermann technique of the washing. There was a strong correlation between the number of larvae recovered using both methods and the number of larvae in the seeded samples, indicating that the two methods give a good indication of changes in the numbers of larvae on pasture if applied in epidemiological studies. The washing machine method recovered higher numbers of larvae than the soaking and Baermann method at all levels of pasture seeding, probably because the machine washed the samples more thoroughly and a sugar centrifugation-flotation step was used. Larval suspensions obtained using the washing machine method were therefore cleaner and thus easier to examine under the microscope. In contrast, the soaking and Baermann method may be more suitable in field-work, especially in places where resources and equipment are scarce, as it is less costly in equipment and less labour intensive. Neither method recovered all the larvae from the seeded samples. The recovery rates for the washing machine method ranged from 18 to 41% while those for the soaking and Baermann method ranged from 0 to 27%. Practical application of the two methods to estimate the number of nematode larvae on pastures without applying a correction factor would therefore result in a significant underestimation. This study provides a model, which can be applied in various laboratories to determine the larval recovery rates for techniques being used and the application of a correction factor when estimating the actual numbers of larvae on pasture.

[Jaundice after Herbage Walking Tour of a 44 Year Old Man].

PubMed

Sawatzki, Mikael; Haller, Christoph; Henz, Samuel

2015-06-03

We report about a 44-year old patient with severe acute hepatitis E after herbage walking-to ur. Transmission occurred with ingestion of contaminated herbs. Symptoms were jaundice, dark urine, rheumatic pains and distinctive fatigue. We could document a benign self-limiting course under regular clinical controls. Hepatitis Eisa worldwide common cause for acute hepatitis with jaundice. In Switzerland contamination of this autochthonic infection is aquired by consumption of pork and venison (seroprevalence up to 22%). Infection can be without symptoms but also can result in acute liver failure. Extrahepatic symptoms are not uncommon.

Methane Emission and Milk Production of Dairy Cows Grazing Pastures Rich in Legumes or Rich in Grasses in Uruguay.

PubMed

Dini, Yoana; Gere, José; Briano, Carolina; Manetti, Martin; Juliarena, Paula; Picasso, Valentin; Gratton, Roberto; Astigarraga, Laura

2012-06-08

Understanding the impact of changing pasture composition on reducing emissions of GHGs in dairy grazing systems is an important issue to mitigate climate change. The aim of this study was to estimate daily CH₄ emissions of dairy cows grazing two mixed pastures with contrasting composition of grasses and legumes: L pasture with 60% legumes on Dry Matter (DM) basis and G pasture with 75% grasses on DM basis. Milk production and CH₄ emissions were compared over two periods of two weeks during spring using eight lactating Holstein cows in a 2 × 2 Latin square design. Herbage organic matter intake (HOMI) was estimated by chromic oxide dilution and herbage organic matter digestibility (OMD) was estimated by faecal index. Methane emission was estimated by using the sulfur hexafluoride (SF6) tracer technique adapted to collect breath samples over 5-day periods. OMD (0.71) and HOMI (15.7 kg OM) were not affected by pasture composition. Milk production (20.3 kg/d), milk fat yield (742 g/d) and milk protein yield (667 g/d) were similar for both pastures. This may be explained by the high herbage allowance (30 kg DM above 5 cm/cow) which allowed the cows to graze selectively, in particular in grass sward. Similarly, methane emission expressed as absolute value (368 g/d or 516 L/d) or expressed as methane yield (6.6% of Gross Energy Intake (GEI)) was not affected by treatments. In conclusion, at high herbage allowance, the quality of the diet selected by grazing cows did not differ between pastures rich in legumes or rich in grasses, and therefore there was no effect on milk or methane production.

The effects of treading by two breeds of dairy cow with different live weights on soil physical properties, poaching damage and herbage production on a poorly drained clay-loam soil.

PubMed

Tuohy, P; Fenton, O; Holden, N M; Humphreys, J

2015-11-01

There is little empirical evidence to indicate that dairy cow live weight affects the extent of soil damage at the hoof-soil interface during grazing on poorly drained permanent grassland. In the present study the impact of Holstein-Friesian (HF) dairy cows with a mean (±standard deviation) live weight of 570 (±61) kg were compared with Jersey × Holstein-Friesian (JX) with a mean live weight of 499 (±52) kg each at two stocking densities: mean 2·42 ± (0·062) and 2·66 (±0·079) cows/ha. Soil physical properties (bulk density, macroporosity, gravimetric water content, air-filled porosity, penetration resistance and shear strength), poaching damage (post-grazing soil surface deformation and hoof-print depth), herbage yield and milk production were measured throughout 2011 and 2012. Soil physical properties, post-grazing soil surface deformation and herbage production were not affected by dairy cow breed or by interactions between breed and stocking density. Hoof-print depth was higher in the HF treatments (39 v. 37 mm, s.e. 0·5 mm). Loading pressure imposed at the soil surface was the same for both breeds due to a direct correlation between live weight and hoof size. Poaching damage was greater at higher stocking density. Using the lighter JX cow offered little advantage in terms of lowering the negative impact of treading on soil physical properties or reducing poaching damage and no advantage in terms of herbage or milk production compared with the heavier HF cow.

Effect of various copper supplements to feed of laying hens on cu content in eggs, liver, excreta, soil, and herbage.

PubMed

Skrivan, M; Skrivanová, V; Marounek, M

2006-02-01

Copper is often added to poultry diets as an antimicrobial agent at doses greatly exceeding the nutritional requirement. In this study, the basal diet of laying hens containing 9.2 mg Cu/kg was supplemented with CuSO(4) x 5H(2)O at 0, 25, 65, 115, and 240 mg Cu/kg dry matter (DM). At Cu dietary concentration just below the level permitted by the European Union (35 mg/kg), the Cu content in the egg yolk was significantly (p < 0.05) increased by 26%, and nonsignificantly by 4.1, 9.1, and 7.9% in the egg white, eggshell, and liver, respectively. When Cu concentration in the diet was doubled, the effect of Cu on Cu content in eggshell and liver was statistically significant as well. In no liver sample was the hygienic limit of Cu content (80 mg/kg) exceeded. Supplementation of diets with Cu increased Cu concentration in excreta linearly from 25.3 to 396.8 mg/kg DM. Dried excreta were used for fertilization of grassland at 21 g N/m(2). Three months later, soil and herbage were sampled and analyzed. The Cu concentration in soil increased from 25.3 to only 46.4 mg/kg DM when dietary Cu concentration rose from 9.2 to 243.7 mg Cu/kg DM. Corresponding Cu concentrations in herbage were 6.8 and 19.2 mg/kg DM. It can be concluded that the deposition of Cu in eggs and liver of hens fed Cu-supplemented diets does not represent a hygienic risk. The accumulation of Cu in soil fertilized with excreta of Cu-fed hens and in herbage was limited.

Study of Biometric Datum of Green Manure Crops in the Process of Biological Soil Reclamation on the Territory of Coal Producer Ojsc “Mine No 12”In The Kemerovo Region

NASA Astrophysics Data System (ADS)

Yakovchenko, M. A.; Pinchuk, L. G.; Kolosolapova, A. A.; Alankina, D. N.

2017-05-01

The article presents the results of a study of green manure crops of different kinds, it is determined that the best growth results were obtained with incorporation of hydrogel in the substratum, and particularly in the clay, so as due to the amount of moisture in the substratum, clay is more hygroscopic and physico-chemical properties of hydrogel significantly increase moisture capacity of the substratum. Sowing field germination of all crops is much higher in the clay then in soil. Territories with the hydrogel usage showed a greater plant density per 1m2. Almost all crops with the major growth of herb were sowed in the clay with hydrogel addition, the crops height increased by 2.5 times. The only exception was Rye, the difference in height between its plants in “soil + hydrogel” and “clay+hydrogel” was less than 1%. It was registered that the root growth of Phacelia in “clay+hydrogel” increased by 2.5 times. While the root growth of Rump, on the contrary, increased in mellow soil with hydrogel by 43%. Other kinds of crops did not perform any difference in their root length. The increase of herbage in mixtures of green manure crops was negligible, whereas mono-sowing of such crops as Esparcet, Rump and Buckwheat showed the greatest increase of herbage in comparison to the soil lots and other sowing variants. The greatest increase of herbage among lots without hydrogel addition was performed on the clay ones: Esparcet - 250%, Buckwheat - 172% Rump - 123% Phacelia - 77.5%. The best results of herbage accumulation were showed by Esparcet, Buckwheat, Rump, Phacelia.

Metabolic load in dairy cows kept in herbage-based feeding systems and suitability of potential markers for compromised well-being.

PubMed

Zbinden, R S; Falk, M; Münger, A; Dohme-Meier, F; van Dorland, H A; Bruckmaier, R M; Gross, J J

2017-08-01

Herbage feeding with only little input of concentrates plays an important role in milk production in grassland dominated countries like Switzerland. The objective was to investigate the effects of a solely herbage-based diet and level of milk production on performance, and variables related to the metabolic, endocrine and inflammatory status to estimate the stress imposed on dairy cows. Twenty-five multiparous Holstein cows were divided into a control (C+, n = 13) and a treatment group (C-, n = 12), according to their previous lactation yield (4679-10 808 kg) from week 3 ante partum until week 8 post-partum (p.p.). While C+ received fresh herbage plus additional concentrate, no concentrate was fed to C- throughout the experiment. Within C+ and C-, the median of the preceding lactation yields (7752 kg) was used to split cows into a high (HYC+, HYC-)- and low-yielding (LYC+, LYC-) groups. Throughout the study, HYC+ had a higher milk yield (35.9 kg/d) compared to the other subgroups (27.2-31.7 kg/d, p < 0.05). Plasma glucose (3.51 vs. 3.72 mmol/l) and IGF-1 (66.0 vs. 78.9ng/mL) concentrations were lower in HYC-/LYC- compared to HYC+/LYC+ cows (p < 0.05). Plasma FFA and BHBA concentrations were dramatically elevated in HYC- (1.1 and 1.6 mmol/l) compared to all other subgroups (mean values: 0.5 and 0.6 mmol/l, p < 0.05). Saliva cortisol, plasma concentrations of serum amyloid A (SAA), haptoglobin (Hp), beta-endorphin (BE) and activity of alkaline phosphatase (AP) were not different between C+ and C-. In conclusion, herbage-fed high-yielding cows without supplementary concentrate experienced a high metabolic load resulting in a reduced performance compared to cows of similar potential fed accordingly. Low-yielding cows performed well without concentrate supplementation. Interestingly, the selected markers for inflammation and stress such as cortisol, Hp, SAA, BE and AP gave no indication for the metabolic load being translated into compromised well-being. Journal of Animal Physiology and Animal Nutrition © 2016 Blackwell Verlag GmbH.

Sward characteristics and performance of dairy cows in organic grass-legume pastures shaded by tropical trees.

PubMed

Paciullo, D S C; Pires, M F A; Aroeira, L J M; Morenz, M J F; Maurício, R M; Gomide, C A M; Silveira, S R

2014-08-01

The silvopastoral system (SPS) has been suggested to ensure sustainability in animal production systems in tropical ecosystems. The objective of this study was to evaluate pasture characteristics, herbage intake, grazing activity and milk yield of Holstein×Zebu cows managed in two grazing systems (treatments): SPS dominated by a graminaceous forage (Brachiaria decumbens) intercropped with different leguminous herbaceous forages (Stylosanthes spp., Pueraria phaseoloides and Calopogonium mucunoides) and legume trees (Acacia mangium, Gliricidia sepium and Leucaena leucocephala), and open pasture (OP) of B. decumbens intercropped only with Stylosanthes spp. Pastures were managed according to the rules for organic cattle production. The study was carried out by following a switch back format with 12 cows, 6 for each treatment, over 3 experimental years. Herbage mass was similar (P>0.05) for both treatments, supporting an average stocking rate of 1.23 AU/ha. Daily dry matter intake did not vary (P>0.05) between treatments (average of 11.3±1.02 kg/cow per day, corresponding to 2.23±0.2% BW). Milk yield was higher (P0.05) in subsequent years. The highest (P0.05) milk yields. Low persistence of Stylosanthes guianensis was observed over the experimental period, indicating that the persistence of forage legumes under grazing could be improved using adapted cultivars that have higher annual seed production. The SPS and a diversified botanical composition of the pasture using legume species mixed with grasses are recommended for organic milk production.

Herbage intake and milk yield in Comisana ewes as effect of 4 vs 7 h of grazing during late lactation.

PubMed

Valenti, Bernardo; Marletta, Donata; De Angelis, Anna; Di Paola, Fortunato; Bordonaro, Salvatore; Avondo, Marcella

2017-06-01

Thirty-two Comisana ewes at late lactation were used in two trials carried out during late spring in 2 consecutive years, with the aim to evaluate the effect of the duration of grazing on herbage intake and performance. In each trial, 16 pluriparous Comisana lactating ewes were equally divided into two groups which grazed in two separate areas of natural pasture from 11:00 to 15:00 h (group 4H) or from 10:00 to 17:00 (group 7H). A concentrate mixture (500 g/day) was also offered to each ewe. The mean maximum temperature was, respectively, 23.5 ± 3.8 °C during experiment 1 and 27.0 ± 3.1 °C during experiment 2. Probably as a consequence of the differences in climatic conditions, the results on herbage intake and milk production were different during the two trials. Herbage dry matter intake was not affected by the duration of grazing during trial 1, whereas it was significantly lower in 4H group compared to that in 7H group (0.67 vs 1.02 kg/day; P < 0.001) during trial 2. It could be hypothesised that while with lower environmental temperature (trial 1), the 4H ewes were able to reach good intake levels despite grazing during the hottest hours; with higher temperatures throughout the trial (trial 2), the 4H ewes reduced ingestion. Milk production was higher in 4H group during trial 1 (778 vs 707 g/day; P = 0.006), whereas it was not affected by the number of hours of grazing during trial 2, despite the higher intake levels reached by the 7H group. In conclusion, 3 extra hours of grazing for ewes at late lactation on a low quality pasture could be nullified in terms of yield response.

Methane Emission and Milk Production of Dairy Cows Grazing Pastures Rich in Legumes or Rich in Grasses in Uruguay

PubMed Central

Dini, Yoana; Gere, José; Briano, Carolina; Manetti, Martin; Juliarena, Paula; Picasso, Valentin; Gratton, Roberto; Astigarraga, Laura

2012-01-01

Simple Summary GHGs emissions are relevant in evaluating environmental impact of farming systems. Methane (CH4) produced by enteric fermentation accounts for half of all anthropogenic emissions of GHGs in Uruguay, where ruminant production is based on year round grazing of forages. Here we compared milk production and CH4 emissions by dairy cows grazing two contrasting mixed pastures (rich in legumes or rich in grasses) using the SF6 tracer technique adapted to collect breath samples over 5-days periods. There were no differences in milk or CH4 production between the contrasting pastures, probably because of the high herbage allowance that enabled selective grazing by cows. Abstract Understanding the impact of changing pasture composition on reducing emissions of GHGs in dairy grazing systems is an important issue to mitigate climate change. The aim of this study was to estimate daily CH4 emissions of dairy cows grazing two mixed pastures with contrasting composition of grasses and legumes: L pasture with 60% legumes on Dry Matter (DM) basis and G pasture with 75% grasses on DM basis. Milk production and CH4 emissions were compared over two periods of two weeks during spring using eight lactating Holstein cows in a 2 × 2 Latin square design. Herbage organic matter intake (HOMI) was estimated by chromic oxide dilution and herbage organic matter digestibility (OMD) was estimated by faecal index. Methane emission was estimated by using the sulfur hexafluoride (SF6) tracer technique adapted to collect breath samples over 5-day periods. OMD (0.71) and HOMI (15.7 kg OM) were not affected by pasture composition. Milk production (20.3 kg/d), milk fat yield (742 g/d) and milk protein yield (667 g/d) were similar for both pastures. This may be explained by the high herbage allowance (30 kg DM above 5 cm/cow) which allowed the cows to graze selectively, in particular in grass sward. Similarly, methane emission expressed as absolute value (368 g/d or 516 L/d) or expressed as methane yield (6.6% of Gross Energy Intake (GEI)) was not affected by treatments. In conclusion, at high herbage allowance, the quality of the diet selected by grazing cows did not differ between pastures rich in legumes or rich in grasses, and therefore there was no effect on milk or methane production. PMID:26486922

Watching Grass - a Pilot Study on the Suitability of Photogrammetric Techniques for Quantifying Change in Aboveground Biomass in Grassland Experiments

NASA Astrophysics Data System (ADS)

Kröhnert, M.; Anderson, R.; Bumberger, J.; Dietrich, P.; Harpole, W. S.; Maas, H.-G.

2018-05-01

Grassland ecology experiments in remote locations requiring quantitative analysis of the biomass in defined plots are becoming increasingly widespread, but are still limited by manual sampling methodologies. To provide a cost-effective automated solution for biomass determination, several photogrammetric techniques are examined to generate 3D point cloud representations of plots as a basis, to estimate aboveground biomass on grassland plots, which is a key ecosystem variable used in many experiments. Methods investigated include Structure from Motion (SfM) techniques for camera pose estimation with posterior dense matching as well as the usage of a Time of Flight (TOF) 3D camera, a laser light sheet triangulation system and a coded light projection system. In this context, plants of small scales (herbage) and medium scales are observed. In the first pilot study presented here, the best results are obtained by applying dense matching after SfM, ideal for integration into distributed experiment networks.

[Discussion on reduction potential of CH4 emission intensity for early off-take practice of grazing yak].

PubMed

Wang, Shi-Ping; Wilkes, Andreas; Wang, Ya-Yun; Bai, Ling

2014-08-01

The case study preliminarily compared the CH4 reduction potential and CH4 emission intensity of 7 year-old and 4 year-old grazing yak after early off-take practice based on the 2006 IPCC GHG inventory guidelines and under the premise of equal herbage consumption. Our results showed that the total CH4 emission was greater by about 86.3 kg for 2.1 4-year yaks compared with 7 years old yak during their life assuming that their total herbage consumption was the same, because total herbage consumption for a 7-year yak was equal to that of 2.1 4-year yaks. However, CH4 emission per unit body weight (1.374 kg x kg(-1)) for a 7-year yak (i. e. emission intensity) was higher than that of 2.1 4-year yaks (0.973 kg x kg(-1)) because total body weight of 2.1 4-year yaks was higher by 192 kg than that of a 7-year yak. According to CH4 emission intensity, change of the early off-take practice from 7-year to 4-year yak could reduce 77 kg CH4 if producing 192 kg body weight through 2.1 4-year yaks compared with a 7-year yak, i. e. reduction potential was about 1 600 kg CO2 equivalent under the same consuming forage. Therefore, for grassland-based animal husbandry, early off-take practice for grazing animals had a great reduction potential in the intensity of greenhouse gases (GHGs) emissions per unit output rather than total emissions of GHGs.

Silvopasture: Small ruminants for establishment, management and usage

USDA-ARS?s Scientific Manuscript database

Small farm pastures, hayfields, and woodlots are very productive in terms of forage, animal and wood products. Inherent livestock production capability can be improved through better herbage and animal management. Woodlot management can increase economic return, species diversity, and farm aesthetic...

NITRATE AND FECAL COLIFORM CONCENTRATIONS IN SILVOPASTURE AND PASTURE LEACHATES

USDA-ARS?s Scientific Manuscript database

A major limitation to efficient forage-based livestock production in Appalachia is asynchrony of forage availability and quality with nutritional requirements of the grazer. Silvopasture is being studied to improve the seasonal distribution and persistence of high quality herbage, sustainability an...

Effects of herbage intake on goat performance in the mediterranean type natural pastures.

PubMed

Hakyemez, Basri H; Gokkus, Ahmet; Savas, Turker; Yurtman, Ismail Y

2009-02-01

This study aimed at identifying changes in natural pastures during the grazing season and investigating the effects of these changes on pasture feeding potential for high yielding dairy goats. During the study, 12 dairy goats were grazed on a 1.5 ha natural pasture for three months from April to June in 2003, 2004 and 2005. The goats were fed 0.5 kg/day of concentrate as a supplement during the grazing season. Botanical composition, herbage production and intake, crude protein (CP), neutral detergent fiber (NDF) and acid detergent fiber (ADF) contents of the pasture were determined. Live weight, milk yield, milk dry matter (DM) and fat content of the goats were monitored. The data were analyzed using a linear model, which evaluated the effects of grazing seasons in each year. Based on the three-year average, 87% of pasture was herbaceous plants and the remaining was shrubs in DM basis with Cistus creticus, Quercus ithaburensis, Pistacia atlantica and Asparagus acutifolius being the major shrub species. The herbage yield in June was significantly lower than in other months in all years (P = 0.001). In all experimental years, the CP content of the pasture decreased but the structural carbohydrates increased as the grazing season proceeded. While live weight was not affected by grazing periods except for 2004 (P = 0.001), milk yield significantly decreased with advancing grazing period (P = 0.001). The results of the present study indicate that natural pasture has a supportive effect in April and May on the milk yield of lactating goats which are in mid-lactation, and suggested that supplementary feeding is required in consecutive grazing periods.

Nutritive value of some herbages for dromedary camel in Iran.

PubMed

Towhidi, A

2007-01-01

To prepare standard tables of chemical composition of feedstuffs and to determine digestibility and palatability of different plant species in dromedary camel, this research was carried out by considering the most consuming herbages of Iranian desert rages. The plant species were included Atriplex lentiformis, Alhagi persarum, Seidlitzia rosmarinus, Saueda fruticosa, Haloxylon ammodendron, Tamarix kotschyi, Hammada salicornica, Salsola yazdiana, Salsola tomentosa, Tamarix aphylla and Artemisia sieberi. Thirty samples of the browsing parts were collected from the rangelands of Yazd province in autumn. Chemical composition of samples including Dry Matter (DM), Crude Protein (CP), Crude Fiber (CF), Neutral Detergent Fiber (NDF), Acid Detergent Fiber (ADF), Ether Extract (EE), Total Ash (TA), macro elements (Ca, P, Mg, K), micro elements (Fe, Mg, Cu, Zn)and gross energy (GE) were analyzed. The in vitro digestibility was determined by camel rumen liquor in Tilley and Terry method. Palatability of the plants were measured by three mature camels in cafeteria trials. The camels voluntarily fed 11 plant species during one hour for six days. Data were analyzed by GLM method in SAS software. The highest CP (18.3%) and the lowest NDF (40.4%) and ADF (35.4%) were related to Tamarix aphylla. The lowest CP (5.5%) and the highest NDF (72.8%) and ADF (59.6%) were related to Artemisia sieberi. The highest organic matter digestibility in dry matter was related to Haloxylon ammodendron. The results also indicated that Atriplex lentiformis, Alhagi persarum, Seidlitzia rosmarinus, Saueda fruticosa, Haloxylon ammodendron, Salsola tomentosa, Hammada salicornica, Tamarix kotschyi, Salsola yazdiana, Tamarix aphylla and Artemisia sieberi were more pleasure feed, respectively. It was not observed any correlation between %DOMD and chemical composition. Moreover, There was not a consistent relationship between the palatability of herbages with %DOMD or chemical composition.

Seasonal nitrogen effects on nutritive value in binary mixtures of tall fescue and bermudagrass

USDA-ARS?s Scientific Manuscript database

Year-round forage production is feasible in much of the southeastern USA through utilization of cool- and warm-season forages. This study determined changes in herbage nutritive value in binary mixtures of cool-season, tall fescue [Schedonorus arundinaceus (Schreb.) Dumort], and warm-season, bermuda...

Comparative trends in forage nutritional quality across the growing season in thirteen grasses

USDA-ARS?s Scientific Manuscript database

Based on recent climate change models, landscapes are likely going to get drier and hotter; thus reducing the available water to support herbage production in species heavily dependent on water for persistence and production such as perennial ryegrass (Lolium perenne L.), orchardgrass (Dactylis glom...

Variation and correlations among European and North American orchardgrass germplasm for herbage yield and nutritive value

USDA-ARS?s Scientific Manuscript database

Efforts to improve water soluble carbohydrate (WSC) concentrations have come to the forefront of perennial forage grass breeding over the last decades. Perennial ryegrass (Lolium perenne L.) breeding has been very successful in developing new cultivars with high WSC and high agronomic performance. ...

Season progression, ontogenesis and environment affect Lespedeza cuneata herbage condensed tannin, fiber and crude protein content

USDA-ARS?s Scientific Manuscript database

Sericea lespedeza [Lespedeza cuneata (Dumont de Courset) G. Don.; SL] is a perennial, warm-season forage legumes with wide adaptation, freeze tolerance, establishment ease and persistence under grazing. Its condensed tannins (CT) could be useful in ruminant systems, not simply as a protein source, b...

Herbage nutritive value of tall fescue-bermudagrass binary mixtures fertilized with combinations of nitrogen fertilizer and poultry litter

USDA-ARS?s Scientific Manuscript database

Year-round forage production is feasible in much of the southeastern USA through utilization of cool- and warm-season forages. This study determined if productivity and nutritive value in binary mixtures of tall fescue [Schedonorus arundinaceus (Schreb.) Dumort] and bermudagrass [Cynodon dactylon (L...

Lake Aquilla - Habitat Survey Hill County, Texas

DTIC Science & Technology

2017-08-01

the year, when the ground is covered with herbage; when the trees are in their green leaf, and the glens are enlivened by running streams. I shall not...Mutel 1997). Shallow disking, with the blades oriented to the direction being pulled can be used to reduce the vigor of native plants (e.g. switchgrass

Effect of understory management on phenological responses of eastern black walnut on an alluvial Arkansas soil

USDA-ARS?s Scientific Manuscript database

Black walnut (Juglans nigra L.) is commonly grown in agroforestry practices for nuts and/or timber with little knowledge of how understory herbage management might affect tree phenology. We compared black walnut plant type (variety and wild-type) for phenological response in date of budburst, leaf ...

Treating mature stands for wildlife

Treesearch

William H. Healy; Gary F. Houf

1989-01-01

Stands older than 60 years or that are medium to large sawtimber size generally provide good wildlife habitat. Mature trees usually produce abundant mast and provide den sites (see fig. 1 in Note 9.04 Treating Immature Stands). The undergrowth in these stands produces moderate amounts of browse and herbage. Mature stands also provide opportunities for management...

Effects of prescribed fire and herbicide application on cattle grazing and herbage production from yellow bluestem pastures

USDA-ARS?s Scientific Manuscript database

Prescribed fire and herbicides are commonly used tools to manage introduced grasses in the Southern Plains, but their effects on livestock production are not well documented. The objectives of this experiment were to determine the effects of prescribed fire or herbicides on the production of grazin...

Productivity and botanical composition of orchardgrass - white clover swards in a cool-temperate hill land region of the eastern United States

USDA-ARS?s Scientific Manuscript database

Understanding the growth dynamics of grass-legume swards is critical as pastoral management practices are adapted to economic constraints and environmental considerations. Efficient management must synchronize use of accumulated herbage with the needs of grazing livestock. This must be accomplishe...

The importance of ingested soils in supplying fluorine and lead to sheep grazing contaminated pastures in the Peak District mining area of Derbyshire, UK.

PubMed

Abrahams, Peter W; Blackwell, Nia L

2013-12-01

For sheep grazing pastures in areas of mineralisation and former metalliferous mining activity, an excessive intake of potentially harmful elements (PHEs) such as fluorine (F) and lead (Pb) can result in clinical and subclinical toxicity. The prime aim of our work was to calculate the intakes of both of these PHEs by sheep grazing pastures in the mineralised/mined Peak District area of Derbyshire. The bi-monthly sampling of topsoils (0-15 cm depth) and the faeces of sheep from fields at seven farms was undertaken for a 1-year period. These samples were analysed for titanium that allowed the rates of soil ingestion (and hence also herbage ingestion since we assume that the sheep have an overall diet of 1 kg dry matter (DM)/day) to be determined. Our findings were then combined with previously published soil and soil-free pasture herbage F and Pb concentrations determined from the seven farms to calculate the intakes of both PHEs. The results show seasonal variations of soil ingestion at the seven farms ranging from <0.1 to 20.1 % of the DM intake (median=3 %), with the highest rates of ingestion being associated with the winter-spring (i.e. December-April) period. Our calculations show that at some farms, sheep can be exposed to dietary concentrations in excess of recommended guidelines potentially throughout the whole year, though livestock movement to less-contaminated pastures would lessen any toxic impact. Because the soil concentrations are greater than those associated with soil-free pasture herbage, ingested soils are the main dietary source of Pb and (especially) F to sheep. However, subjecting freshly sampled topsoils to sequential extraction procedures undertaken in the laboratory indicates that the majority of Pb and (especially) F may not be readily soluble in the ovine digestion system, so reducing the quantities of both PHEs available for absorption.

Strategic grazing management towards sustainable intensification at tropical pasture-based dairy systems.

PubMed

Congio, Guilhermo F S; Batalha, Camila D A; Chiavegato, Marília B; Berndt, Alexandre; Oliveira, Patrícia P A; Frighetto, Rosa T S; Maxwell, Thomas M R; Gregorini, Pablo; Da Silva, Sila C

2018-05-01

Agricultural systems are responsible for environmental impacts that can be mitigated through the adoption of more sustainable principles. Our objective was to investigate the influence of two pre-grazing targets (95% and maximum canopy light interception during pasture regrowth; LI 95% and LI Max , respectively) on sward structure and herbage nutritive value of elephant grass cv. Cameroon, and dry matter intake (DMI), milk yield, stocking rate, enteric methane (CH 4 ) emissions by Holstein × Jersey dairy cows. We hypothesized that grazing strategies modifying the sward structure of elephant grass (Pennisetum purpureum Schum.) improves nutritive value of herbage, increasing DMI and reducing intensity of enteric CH 4 emissions, providing environmental and productivity benefits to tropical pasture-based dairy systems. Results indicated that pre-sward surface height was greater for LI Max (≈135 cm) than LI 95% (≈100 cm) and can be used as a reliable field guide for monitoring sward structure. Grazing management based on LI 95% criteria improved herbage nutritive value and grazing efficiency, allowing greater DMI, milk yield and stocking rate by dairy cows. Daily enteric CH 4 emission was not affected; however, cows grazing elephant grass at LI 95% were more efficient and emitted 21% less CH 4 /kg of milk yield and 18% less CH 4 /kg of DMI. The 51% increase in milk yield per hectare overcame the 29% increase in enteric CH 4 emissions per hectare in LI 95% grazing management. Thereby the same resource allocation resulted in a 16% mitigation of the main greenhouse gas from pasture-based dairy systems. Overall, strategic grazing management is an environmental friendly practice that improves use efficiency of allocated resources through optimization of processes evolving plant, ruminant and their interface, and enhances milk production efficiency of tropical pasture-based systems. Copyright © 2018 Elsevier B.V. All rights reserved.

Timber, Browse, and Herbage on Selected Loblolly-Shortleaf Pine-Hardwood Forest Stands

Treesearch

Gale L. Wolters; Alton Martin; Warren P. Clary

1977-01-01

A thorough vegetation inventory was made on loblolly-shortleaf pine-hardwood stands scheduled by forest industry for clearcutting, site preparation, and planting to pine in north central Louisiana and southern Arkansas. Overstory timber, on the average, contained about equal proportions of softwood and hardwood basal area. Browse plants ranged from 5,500 to over 70,...

Response of Competing Vegetation to Site Preparation on West Gulf Coastal Plain Commercial Forest Land

Treesearch

Gale L. Wolters; Henry A. Pearson; Ronald E. Thill; V. Clark Baldwin; Alton Martin

1995-01-01

The response of woody and herbaceous vegetation to site preparation, subsoil texture, and fertilization was measured on the West Gulf Coastal Plain. The influences of these treatments on competing vegetation were short-term. Drastic soil disturbance and fertilization briefly increased herbage production. Shear-windrow and shear-disk were generally the most effective...

Effect of sprouted barley grain supplementation of an herbage or haylage diet on ruminal fermentation and methane output in continuous culture

USDA-ARS?s Scientific Manuscript database

A 4-unit dual-flow continuous culture fermentor system was used to assess the effect of supplementing 7-d sprouted barley (SB) or barley grain (BG), with a pasture (orchardgrass) or haylage diet, on nutrient digestibility, VFA production, bacterial protein synthesis, and methane production. Treatmen...

Modeling forest scenic beauty: Concepts and application to ponderosa pine

Treesearch

Thomas C. Brown; Terry C. Daniel

1984-01-01

Statistical models are presented which relate near-view scenic beauty of ponderosa pine stands in the Southwest to variables describing physical characteristics. The models suggest that herbage and large ponderosa pine contribute to scenic beauty, while numbers of small and intermediate-sized pine trees and downed wood, especially as slash, detract from scenic beauty....

Managing interior Northwest rangelands: the Oregon Range Evaluation Project.

Treesearch

Thomas M. Quigley; H. Reed Sanderson; Arthur R. Tiedemann

1989-01-01

This report is a synthesis of results from an 11-year study of the effects of increasing intensities of range management strategies on herbage production, water resources, economics, and associated resources-such as wood fiber and recreation-in Grant County, Oregon. Four intensities of management were studied on Federal land (19 grazing allotments) ranging from no...

Clipping affects flowering of California poppy at two growth stages

Treesearch

Raymond D. Ratliff; Richard L. Hubbard

1975-01-01

The effects of clipping California-poppy (Eschscholzia californica Cham.) at various growth stages on plant survival, flowering, herbage yield, and root production were studied at the San Joaquin Experimental Range, in central California. Plants were clipped once to a 2-cm stubble at one of six stages. Through the early reproductive stage, a single...

Variation in leader length of bitterbrush

Treesearch

Richard L. Hubbard; David. Dunaway

1958-01-01

The estimation of herbage production and· utilization in browse plants has been a problem for many years. Most range technicians have simply estimated the average length of twigs or leaders. then expressed use by deer and livestock as a percentage thereof based on the estimated average length left after grazing. Riordan used this method on mountain mahogany (

Plant guide: Parsnipflower buckwheat: Eriogonum heracleoides Nutt

Treesearch

Derek Tilley; Dan Ogle; Loren St. John

2007-01-01

Parsnipflower buckwheat is a perennial forb to subshrub with a branching woody stem. Leaves are covered with dense white hairs making the herbage appear a light green to blue-grayish color. The flowers are a creamy-yellow color and have six petals which are borne in simple or compound umbels. Plants of parsnipflower buckwheat can be distinguished from other closely...

Differential response to stocking rates and feeding by two genotypes of Holstein-Friesian cows in a pasture-based automatic milking system.

PubMed

Nieman, C C; Steensma, K M; Rowntree, J E; Beede, D K; Utsumi, S A

2015-12-01

The throughput of automatic milking systems (AMS) is likely affected by differential traffic behavior and subsequent effects on the milking frequency and milk production of cows. This study investigated the effect of increasing stocking rate and partial mixed ration (PMR) on the milk production, dry matter intake (DMI), feed conversion efficiency (FCE) and use of AMS by two genotypes of Holstein-Friesian cows in mid-lactation. The study lasted 8 weeks and consisted in a factorial arrangement of two genotypes of dairy cattle, United States Holstein (USH) or New Zealand Friesian (NZF), and two pasture-based feeding treatments, a low stocking rate system (2 cows/ha) fed temperate pasture and concentrate, or a high stocking rate system (HSR; 3 cows/ha) fed same pasture and concentrate plus PMR. A total of 28 cows, 14 USH and 14 NZF, were used for comparisons, with 12 cows, six USH and six NZF, also used for tracking of animal movements. Data were analyzed by repeated measure mixed models for a completely randomized design. No differences (P>0.05) in pre- or post-grazing herbage mass, DMI and FCE were detected in response to increases in stocking rate and PMR feeding in HSR. However, there was a significant (P<0.05) grazing treatment×genotype×week interaction on milk production, explained by differential responses of genotypes to changes in herbage mass over time (P<0.001). A reduction (P<0.01) in hours spent on pasture was detected in response to PMR supplementation in HSR; this reduction was greater (P=0.01) for USH than NZF cows (6 v. 2 h, respectively). Regardless of the grazing treatment, USH cows had greater (P=0.02) milking frequency (2.51 v. 2.26±0.08 milkings/day) and greater (P<0.01) milk yield (27.3 v. 16.0±1.2 kg/day), energy-corrected milk (24.8 v. 16.5±1.0 kg/day), DMI (22.1 v. 16.6±0.8 kg/day) and FCE (1.25 v. 1.01±0.06 kg/kg) than NZF cows. There was also a different distribution of milkings/h between genotypes (P<0.001), with patterns of milkings/h shifting (P<0.001) as a consequence of PMR feeding in HSR. Results confirmed the improved FCE of grazing dairy cows with greater milk production and suggested the potential use of PMR feeding as a tactical decision to managing HSR and milkings/day in AMS farms.

Effect of starchy or fibrous carbohydrate supplementation of orchardgrass on ruminal fermentation and methane output in continuous culture

USDA-ARS?s Scientific Manuscript database

A 4-unit dual-flow continuous culture fermentor system was used to assess the effect of supplementing an orchardgrass (Dactylis glomerata L.) herbage diet with 2 levels [5 and 10% of total dry matter (DM) fed] of starchy (barley grain; BAR) or fibrous (beet pulp; BP) carbohydrates on nutrient diges...

Effect of starchy or fibrous carbohydrate supplementation of an herbage diet on ruminal fermentation and methane output in continuous culture

USDA-ARS?s Scientific Manuscript database

A 4-unit dual-flow continuous culture fermentor system was used to assess the effect of supplementing 2 levels (5 and 10% of diet DM) of starchy (barley grain: BAR) or fibrous (beet pulp: BP) carbohydrate (CHO) to an orchardgrass diet on nutrient digestibility, VFA production, bacterial protein synt...

Grazing and Burning Impacts on Deer Diets on Lousiana Pine-Bluestem Range

Treesearch

Ronald E. Thill; Alton Martin; Hershel F. Morris; E. Donice McCune

1987-01-01

Diets of 3-5 tame white-tailed deer (Odocoileus virginianus) on adjacent ungrazed and continuously grazed (35% herbage removal by late CM) forested pastures were compared for forage-class use, botanical similarities, foraging selectivity and efficiency, and diet quality. Both pastures were divided into 3 burning subunits and burned in late February on a 3-year...

Deer and Cattle Diets on Heavily Grazed Pine-Bluestem Range

Treesearch

Ronald E. Thill; Alton Martin

1989-01-01

We studied dietary overlap between captive white-tailed deer (n = 3) (Odocoileus virginianus) and cattle (n = 4) for 3 years on 2 rotationally burned, 54-ha longleaf pine (Pinus palustris)-bluestem (Andropogon spp.) pastures in central Louisiana. A third of each pasture was burned each year in late February. One pasture was grazed heavily (61-77% herbage use) yearlong...

Effect of starchy or fibrous carbohydrate supplementation of an herbage diet on ruminal fermentation and methane output in continuous culture

USDA-ARS?s Scientific Manuscript database

A dual-flow continuous culture fermentor system was used to assess the effect of supplementing 2 levels (5 or 10% of diet DM) of starchy (barley: BAR) or fibrous (beet pulp: BP) carbohydrate (CHO) to an orchardgrass diet on nutrient digestibility, VFA production, bacterial protein synthesis, and met...

Condensed tannins in some forage legumes: their role in the prevention of ruminant pasture bloat.

PubMed

Lees, G L

1992-01-01

For the past 20 years, the focus in our laboratory has been on finding the causes of ruminant pasture bloat and eventually breeding a bloat-safe alfalfa (Medicago sativa L.); i.e., with bloat potential reduced to the economic threshold. In the mid-seventies, the mechanisms of bloat were explored and found to be more physical than chemical. Characteristic of all bloating legumes after ingestion was a very rapid initial rate of ingestion by rumen microbes. Through the study of bloating and non-bloating legumes, factors were elucidated in the plant that would slow this process. One of these factors was the presence of condensed tannins in the herbage. Some of the non-bloating legumes contained these secondary metabolites, but no condensed tannins were found in any of the bloating legumes. Therefore, species containing an appreciable amount of condensed tannins in their leaves and stems are considered to be non-bloating. Conventional breeding methods have not been successful in producing an alfalfa with condensed tannins in its herbage. New approaches using tissue culture techniques are being attempted, but genetic engineering has the greatest potential for success.

Supplementation of herbage-based diets with corn meal or liquid molasses changes the milk fatty acids profile in grazing dairy cows

USDA-ARS?s Scientific Manuscript database

Previous studies showed that feeding carbohydrate sources with different NSC profiles (e.g., starch vs. sucrose) and rates of ruminal degradation altered the milk fatty acids (FA) profile in dairy cows. This study evalu¬ated the impact of corn meal (CM) or liquid molasses (MOL) on the milk FA profil...

Effects of Fertilizer Nitrogen on Tree Growth, Foliar Nitrogen, and Herbage in Eastern Cottonwood Plantations

Treesearch

B. G. Blackmon

1977-01-01

When five rates of nitrogen fertilizer (0 to 672 kg/ha) were tested in two eastern cottonwood (Populus deltoides Bartr.) plantations 7 and 10 years old in the Mississippi River floodplain , first season volume growth was more than doubled by fertilization . By the end of the third season, the direct effect of fertilization had apparently disappeared although a volume...

Understory Responses to Fertilization to Eroded Kisatchie Soil in Louisiana

Treesearch

Ronald E. Thill; John C. Bellemore

1988-01-01

Responses of native vegetation growing on highly eroded Kisatchie soil to a May 1982 application of 672 kg/ha of 16-30-l 3 fertilizer were monitored on two sites through 1985. Herbage increased from 1,133 kg/ha on control plots to 4,956 kg/ha on fertilized plots by August of the first year. Litter accumulations on treated plots provided excellent soil protection...

Animal responses to herbage allowance: Forage intake and body weight gain of sheep grazing the Inner Mongolian steppe - Results of a six-year study.

PubMed

Dickhoefer, U; Bösing, B M; Hasler, M; Hao, J; Lin, L; Müller, K; Wang, C; Glindemann, T; Tas, B; Gierus, M; Taube, F; Susenbeth, A

2016-05-01

An increasing human population and the growing demand for food of animal origin are leading to an intensification of sheep production and widespread overgrazing of the grassland steppe in Inner Mongolia. The aim of this study was to analyze the effect of herbage allowance (HA) on OM intake (OMI) and BW gain (BWG) of grazing sheep. In July to September 2005 to 2010, a grazing experiment was conducted in the Xilin River Basin using 15-mo-old female Mongolian fat-tailed sheep (31.5 kg BW [SE 0.2]). Six HA classes were tested on 4 experimental plots per HA class that were alternately used for grazing and haymaking each year (i.e., = 2 grazed plots per HA class and year). Mean HA ranged from 15.4 (SD 4.0) to 1.5 kg (SD 0.8) herbage DM/kg BW in HA class 1 to 6, respectively. In 6 sheep per plot (4 sheep in 2009 and 2010), OMI and BWG were determined. Titanium dioxide was used to determine fecal excretion, and digestibility of ingested OM was estimated from CP concentration in feces. Fecal grab samples were collected during 5 d each in July, August, and September. The animals were weighed monthly. Daily OMI of sheep ranged between 68 and 89 g/kg BW and was not affected by HA class ( = 0.373), so that total OMI per hectare was exponentially decreased with increasing HA (root mean square error [RMSE] ≤ 0.31 g/d; ≤ 0.003 for the slope estimates). The BWG of individual sheep increased with increasing HA in 2 of the 6 yr (RMSE 18.4 g/d; ≤ 0.175 for the positive slope estimates). Nevertheless, BWG per hectare strongly decreased with increasing HA (RMSE 0.25 g/d; ≤ 0.006 for the slope estimates). These data support the common practice of farmers to manage the grassland at low HA to allow for greater animal performance per unit of land area.

Variation in shrub and herb cover and production on ungrazed pine and sagebrush sites in eastern Oregon: a 27-year photomonitoring study.

Treesearch

Frederick C. Hall

2007-01-01

Study objectives were to evaluate yearly fluctuations in herbage canopy cover and production to aid in defining characteristics of range condition guides. Sites are located in the forested Blue Mountains of central Oregon. They were selected from those used to develop range condition guides where soil, topographic, and vegetation parameters were measured as a...

Increasing milk solids production across lactation through genetic selection and intensive pasture-based feed system.

PubMed

Coleman, J; Pierce, K M; Berry, D P; Brennan, A; Horan, B

2010-09-01

The objective of the study was to quantify the effect of genetic improvement using the Irish total merit index, the Economic Breeding Index (EBI), on overall performance and lactation profiles for milk, milk solids, body weight (BW), and body condition score (BCS) within 2 pasture-based systems of milk production likely to be used in the future, following abolition of the European Union's milk quota system. Three genotypes of Holstein-Friesian dairy cattle were established from within the Moorepark dairy research herd: LowNA, indicative of animals with North American origin and average or lower genetic merit at the time of the study; HighNA, North American Holstein-Friesians of high genetic merit; and HighNZ, New Zealand Holstein-Friesians of high genetic merit. Animals from within each genotype were randomly allocated to 1 of 2 possible pasture-based feeding systems (FS): 1) The Moorepark pasture (MP) system (2.64 cows/ha and 344 kg of concentrate supplement per cow per lactation) and 2) a high output per hectare (HC) system (2.85 cows/ha and 1,056 kg of concentrate supplement per cow per lactation). Pasture was allocated to achieve similar postgrazing residual sward heights for both treatments. A total of 126, 128, and 140 spring-calving dairy cows were used during the years 2006, 2007, and 2008, respectively. Each group had an individual farmlet of 17 paddocks and all groups were managed similarly throughout the study. The effects of genotype, FS, and the interaction between genotype and FS on milk production, BW, and BCS across lactation were studied using mixed models with factorial arrangements of genotype and FS accounting for the repeated cow records across years. No significant genotype by FS interaction was observed for any of the variables measured. Results show that milk solids production of the national average dairy cow can be increased across lactation through increased EBI. High EBI genotypes (HighNA and HighNZ) produced more milk solids per cow and per hectare than the LowNA genotype (2.7 and 4.1%, respectively). The results also suggest that when concentrate supplementation is used to facilitate increased stocking rates, increased herbage utilization and decreased substitution of concentrate for herbage can be achieved. When implemented, the HC FS could increase the overall productivity of pasture-fed dairy farming systems where land availability is the primary limiting factor of production. Copyright (c) 2010 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Effects of dietary zinc, iron, and copper in layer feed on distribution of these elements in eggs, liver, excreta, soil, and herbage.

PubMed

Skrivan, M; Skrivanová, V; Marounek, M

2005-10-01

An experiment was conducted to evaluate the effect of dietary content and combinations of Zn, Fe, and Cu on deposition of these elements in egg components, liver, and excreta. Excreta were applied as a manure to a lawn, and 3 mo later soil and herbage samples were taken and analyzed. The experiment comprised 144 hens in 8 groups. The basal diet contained Zn, Fe, and Cu at 63.4, 92.8, and 9.0 mg/kg, respectively. It was supplemented with 1, 2, or 3 trace elements (inorganic forms) at 80 mg of Zn/kg, 120 mg of Fe/kg, and 25 mg of Cu/kg. Recovery of Zn, Fe, and Cu in eggs of hens fed the basal diet was 10.7, 9.8, and 4.4% of the alimentary intake, respectively. A Zn-Cu antagonism was observed; deposition of Zn in the yolk was significantly decreased by Cu addition and vice versa (P < 0.01). Supplementation of the basal diet with Fe increased Fe concentration in egg yolk and white by 6.3 and 2.2%, respectively. The combination of Fe with Zn and Cu, however, increased Fe concentration in the yolk and white by 36.7 and 34.9%, respectively (P < 0.01). The enrichment of eggs with the other elements was marginal (Cu) or absent (Zn). Effects of Zn, Fe, and Cu of the basal diet on liver concentrations of these elements were relatively small, and no antagonism between Zn and Cu was apparent. Supplementation of the basal diet with the combination of Zn and Fe, however, significantly decreased hepatic concentration of Cu. On the other hand, Cu supplementation significantly increased Fe concentration in livers of hens fed the Fe-supplemented diet (P < 0.01). Concentrations of Zn, Fe, and Cu in excreta were related to their dietary content. High concentrations of Zn, Fe, and Cu in excreta corresponded with limited deposition of the 3 elements in eggs and liver. Concentrations of Zn, Fe, and Cu in herbage correlated significantly with the supply of these elements by hen excreta into soil. The Zn supplied by hen excreta was more stable than Fe and Cu; thus Zn could accumulate in the soil.

Dietary potassium-sodium imbalance as a factor in the aetiology of primary ruminal tympany in dairy cows.

PubMed

Turner, M A

1981-12-01

Results of an investigation into the chemical composition of pasture herbage on twelve New Zealand dairy farms, with contrasting incidences of primary ruminal tympany (bloat), are presented. The data suggest that dietary K;Na ratio may be an important factor in the aetiology of bloat; a factor that does not seem to have been recognised in the past. Other supportive evidence for this hypothesis is briefly discussed.

Effect of water-soluble carbohydrate content in orchardgrass pasture on grazing time and rumen fermentation in dairy cows.

PubMed

Ueda, Koichiro; Mitani, Tomohiro; Kondo, Seiji

2016-09-01

Two experiments were conducted to clarify the effect of water-soluble carbohydrate (WSC) content in orchardgrass pasture on the diurnal distribution of grazing time. Six ruminally cannulated, non-lactating dairy cows were grazed on either of two pastures with different orchardgrass cultivars containing low WSC (LWSC; cultivar: 'Hokkai 28') or high WSC (HWSC; cultivar: 'Harunemidori'). The cows were grazed in morning and evening sessions in experiment 1, whereas the cows were grazed throughout the day in experiment 2. In experiment 1, grazing time of the cows on HWSC was longer than that of the cows on LWSC (P < 0.01). This difference was larger in the morning session than in the evening session (pasture × grazing session: P < 0.05). Effects on herbage intake were similar to those on grazing time. In experiment 2, daily total grazing time was longer for the cows on HWSC than for those on LWSC (P < 0.05). The cows on HWSC spent a longer time grazing than those on LWSC in the morning between 03.00 and 09.00 hours (P < 0.01). The results indicated that prolonged grazing time in the period between dawn and early morning could increase daily herbage intake in cows grazed on pastures of orchardgrass cultivars with high-WSC content. © 2015 Japanese Society of Animal Science.

Rangeland -- Plant responses to elevated CO sub 2

DOE Office of Scientific and Technical Information (OSTI.GOV)

Owensby, C.E.; Coyne, P.I.; Ham, J.M.

1992-01-01

Several broad conclusions which can be drawn from the work that was accomplished during the first 3-year phase of the study is described. In prairie ecosystems dominated by C{sub 4} grasses, it is likely that elevated atmospheric CO{sub 2} will increase ecosystem level productivity, with a greater increase in belowground productivity. The increased productivity will primarily result from increased water use efficiency due to the anti-transpirant action of CO{sub 2}. Fumigation chambers are directly confounded with elevated CO{sub 2} effects, in that both reduce evapotranspiration. The reduced evapotranspiration of the fumigation chamber is primarily through reduced wind speeds and reducedmore » radiation. In very dry years, fumigation chamber effects are negligible, but in years with normal precipitation, chamber effects and elevated CO{sub 2} effects are essentially equal with respect to reduced evapotranspiration effects. Increased production under elevated CO{sub 2} results in reduced nitrogen concentration in the herbage and increased fiber concentrations. Consequently, digestibility of the herbage is reduced, and microbial degradation of surface litter and soil organic matter is slowed. On the negative side, ruminant productivity will likely be reduced substantially, but increased carbon storage in the soil may buffer against future rise in atmospheric CO{sub 2}. Tallgrass prairie will not likely change greatly in botanical composition, since the C{sub 4} dominants responded to elevated CO{sub 2} more than the C{sub 3} subdominants.« less

Modelling field scale spatial variation in water run-off, soil moisture, N2O emissions and herbage biomass of a grazed pasture using the SPACSYS model.

PubMed

Liu, Yi; Li, Yuefen; Harris, Paul; Cardenas, Laura M; Dunn, Robert M; Sint, Hadewij; Murray, Phil J; Lee, Michael R F; Wu, Lianhai

2018-04-01

In this study, we evaluated the ability of the SPACSYS model to simulate water run-off, soil moisture, N 2 O fluxes and grass growth using data generated from a field of the North Wyke Farm Platform. The field-scale model is adapted via a linked and grid-based approach (grid-to-grid) to account for not only temporal dynamics but also the within-field spatial variation in these key ecosystem indicators. Spatial variability in nutrient and water presence at the field-scale is a key source of uncertainty when quantifying nutrient cycling and water movement in an agricultural system. Results demonstrated that the new spatially distributed version of SPACSYS provided a worthy improvement in accuracy over the standard (single-point) version for biomass productivity. No difference in model prediction performance was observed for water run-off, reflecting the closed-system nature of this variable. Similarly, no difference in model prediction performance was found for N 2 O fluxes, but here the N 2 O predictions were noticeably poor in both cases. Further developmental work, informed by this study's findings, is proposed to improve model predictions for N 2 O. Soil moisture results with the spatially distributed version appeared promising but this promise could not be objectively verified.

A new tower-based hyperspectral system for the estimation of CO2 fluxes and biophysical parameters in a subalpine grassland ecosystem

NASA Astrophysics Data System (ADS)

Vescovo, L.; Gianelle, D.; Marcolla, B.; Zaldei, A.; Sakowska, K.

2013-12-01

Linking optical remote sensing with carbon fluxes and biophysical parameters is critical to exploit spatial and temporal extensive information useful for validating model simulations at different scales. Proximal sensing is fundamental to quantify and understand the seasonal dynamics of ecosystems and to upscale the observations carried out at the ground level. In this study, we present the results from an ongoing research project at the FLUXNET eddy covariance site of Monte Bondone (Italy). The site is located at 1550 m a.s.l. on a mountain plateau in the Italian Alps (Viote del Monte Bondone). The area is managed as an extensively-managed meadow, cut once a year, and dominated by Nardus stricta and Festuca nigrescens. The climate of this area is sub-continental (warm and wet summer), with precipitation peaks in spring and autumn. A new hyperspectral system (WhiteRef Box, developed by Fondazione Edmund Mach in collaboration with the Institute of Biometeorology, CNR, Italy) based on the ASD FieldSpec spectrometer (spectral range 350-2500 nm, resolution ~3 nm at 700 nm) was designed to acquire continuous radiometric measurements. The system was installed on the eddy covariance tower at a height of 6 m, with a field of view of 25°. To obtain reflectance values, white panel radiance spectra and canopy radiance spectra were collected every 5 minutes between 10:00 a.m. and 1:00 p.m. (solar time) during the growing season of 2013. In addition, measurements of biophysical parameters such as above-ground biomass, fraction of Absorbed Photosynthetically Active Radiation (fAPAR), Plant Area Index, Canopy Chlorophyll Content, Canopy Water Content and Green Herbage Ratio were performed at weekly intervals within the spectrometer footprint (~5 m2). In this work, we present some preliminary results regarding the potential of spectral vegetation indices - based on VNIR and SWIR spectral bands- for capturing seasonal trends of CO2 fluxes as well as vegetation biophysical parameters dynamics. Spectral vegetation indices sensitive to chlorophyll content (such as Meris Terrestrial ChIorophyll Index, Vogelmann Indices) showed a good linear correlation with fAPAR, daily Gross Primary Production and chlorophyll content (R2> 0.8 for all the three variables). The SWIR-based Vegetation Indices (e.g. Normalised Difference Infrared Index, Moisture Stress Index) confirmed their ability to estimate Canopy Water Content. Most of the analyzed indices showed to be linearly related with Green Herbage Ratio (explaining more than 80% of variance). The Near Infrared Difference Index (Vescovo et al., 2012) confirmed his potential in predicting canopy structural parameters such as Plant Area Index and biomass (R2> 0.90).

Effect of timing and type of supplementary grain on herbage intake, nitrogen utilization and milk production in dairy cows grazed on perennial ryegrass pasture from evening to morning.

PubMed

Ueda, Koichiro; Mitani, Tomohiro; Kondo, Seiji

2017-01-01

The present study aimed to clarify the effect of timing and type of supplementary grain in grazing dairy cows on herbage dry matter intake (HDMI), nitrogen utilization and milk production. Eight lactating cows were allowed to graze from evening to morning during three seasonal periods (spring, summer, autumn). They were randomly allocated to four treatments (timing: pre- (Pre) or post-grazing (Post), for large grain allotments consisting of 75% of daily grain offered; grain type: barley or corn) in 4 × 4 Latin square designs in each period. In the spring period, HDMI was greater for cows fed corn than those fed barley (P = 0.005), whereas cows in the Pre treatment had a similar HDMI, higher (P = 0.049) urinary purine derivative concentration and greater (P = 0.004) milk yield compared with cows in the Post treatment. In the summer and autumn periods, timing treatments did not affect HDMI, nitrogen utilization or milk production, but cows supplemented with barley had higher urinary purine derivatives concentration (P < 0.05) and milk yield (P < 0.05) compared with those supplemented with corn. The results indicate that large grain allotments immediately before evening grazing during early grazing seasons increased ruminal microbial protein synthesis and milk production without reducing HDMI regardless of grain type. © 2016 Japanese Society of Animal Science.

Lead poisoning of horses in the vicinity of a battery recycling plant.

PubMed

Palacios, H; Hibarren, I; Olalla, M J; Cala, V

2002-05-06

The diagnosis of lead poisoning in horses living on farmland in the vicinity of a battery recycling plant was based on clinical signs as well as on laboratory findings. Chemical analysis of six surface soils (0-15 cm) and herbage samples taken at different distances to the recycling plant showed very high total lead levels in the closest sites to the facility and a clear decrease with distance. Total lead levels in soil samples ranged from 127 to 5657 mg kg(-1), with more than 70% of lead extractable by EDTA in the most polluted soils. Lead levels in the aerial part of herbage samples were in the range of 113-4741 mg kg(-1). A water washing pre-treatment of the vegetal samples considerably diminished the concentration of lead, suggesting that airborne lead particles from the facility emissions were fixed on the shoots. The analysis of samples taken from six dead horses showed lead concentrations, expressed as mg kg(-1) (d.w.), as follows: blood: 0.20-0.89; liver: 2.5-15; kidney: 1.70-6.75. Lead intake levels, estimated according to the ingestion rate of Grammineae forage, illustrates that the apported lead through the ingestion of vegetation growing in the closest sites to the recycling plant was approximately 99.5 mg Pb/kg body weight/day surpassing the fatal dosage for horses of 2.4 mg Pb/kg body weight/day reported by Hammond and Aronson, Ann NY Acad Sci, 1964; 111: 595-611.

Rangeland -- Plant responses to elevated CO{sub 2}. Progress report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Owensby, C.E.; Coyne, P.I.; Ham, J.M.

1992-10-01

Several broad conclusions which can be drawn from the work that was accomplished during the first 3-year phase of the study is described. In prairie ecosystems dominated by C{sub 4} grasses, it is likely that elevated atmospheric CO{sub 2} will increase ecosystem level productivity, with a greater increase in belowground productivity. The increased productivity will primarily result from increased water use efficiency due to the anti-transpirant action of CO{sub 2}. Fumigation chambers are directly confounded with elevated CO{sub 2} effects, in that both reduce evapotranspiration. The reduced evapotranspiration of the fumigation chamber is primarily through reduced wind speeds and reducedmore » radiation. In very dry years, fumigation chamber effects are negligible, but in years with normal precipitation, chamber effects and elevated CO{sub 2} effects are essentially equal with respect to reduced evapotranspiration effects. Increased production under elevated CO{sub 2} results in reduced nitrogen concentration in the herbage and increased fiber concentrations. Consequently, digestibility of the herbage is reduced, and microbial degradation of surface litter and soil organic matter is slowed. On the negative side, ruminant productivity will likely be reduced substantially, but increased carbon storage in the soil may buffer against future rise in atmospheric CO{sub 2}. Tallgrass prairie will not likely change greatly in botanical composition, since the C{sub 4} dominants responded to elevated CO{sub 2} more than the C{sub 3} subdominants.« less

Phosphorus and Defoliation Interact and Improve the Growth and Composition of the Plant Community and Soil Properties in an Alpine Pasture of Qinghai-Tibet Plateau.

PubMed

Qi, Juan; Nie, Zhongnan; Jiao, Ting; Zhang, Degang

2015-01-01

Pasture degradation caused by overgrazing and inappropriate fertiliser management is a major production and environmental threat in Qinghai-Tibet Plateau. Previous research has focused on the effects of mixed nitrogen (N) and phosphorus (P) fertiliser and reduced grazing pressure on the plant community of the grassland; however, the role of P and how it interacts with various defoliation (the process of the complete or partial removal of the above-ground parts of plants by grazing or cutting) intensities on the plant and soil of the grassland ecosystem have not been quantified. A field experiment was conducted to quantify how P application in combination of defoliation pressure could impact the dynamic change of the plant and soil in a native alpine grassland ecosystem of the Qinghai-Tibet Plateau, China, from May 2012 to September 2014. A split-plot design with 4 replicates and repeated measures was used to determine the growth and composition of plant community and soil physical and chemical properties under various levels of P fertiliser and defoliation intensity. The results showed that applying 20 kg P/ha increased the herbage yield of Melissitus ruthenica by 68% and total pasture yield by 25%. Close defoliation favoured the growth and plant frequency of the shorter species, whereas lax defoliation favoured that of the taller plant species. Medium P rate and cutting to 3 cm above ground gave an overall best outcome in pasture yield, quality and frequency and soil moisture and nutrient concentration. Application of P fertiliser with a moderate defoliation pressure to promote legume growth and N fixation has the potential to achieve multiple benefits in increasing pasture and livestock production and improving environmental sustainability in the alpine pasture of Qinghai-Tibet Plateau, a fragile and P-deficient ecosystem zone in China and its western neighbouring countries.

Phosphorus and Defoliation Interact and Improve the Growth and Composition of the Plant Community and Soil Properties in an Alpine Pasture of Qinghai-Tibet Plateau

PubMed Central

Qi, Juan; Nie, Zhongnan; Jiao, Ting; Zhang, Degang

2015-01-01

Pasture degradation caused by overgrazing and inappropriate fertiliser management is a major production and environmental threat in Qinghai-Tibet Plateau. Previous research has focused on the effects of mixed nitrogen (N) and phosphorus (P) fertiliser and reduced grazing pressure on the plant community of the grassland; however, the role of P and how it interacts with various defoliation (the process of the complete or partial removal of the above-ground parts of plants by grazing or cutting) intensities on the plant and soil of the grassland ecosystem have not been quantified. A field experiment was conducted to quantify how P application in combination of defoliation pressure could impact the dynamic change of the plant and soil in a native alpine grassland ecosystem of the Qinghai-Tibet Plateau, China, from May 2012 to September 2014. A split-plot design with 4 replicates and repeated measures was used to determine the growth and composition of plant community and soil physical and chemical properties under various levels of P fertiliser and defoliation intensity. The results showed that applying 20 kg P/ha increased the herbage yield of Melissitus ruthenica by 68% and total pasture yield by 25%. Close defoliation favoured the growth and plant frequency of the shorter species, whereas lax defoliation favoured that of the taller plant species. Medium P rate and cutting to 3 cm above ground gave an overall best outcome in pasture yield, quality and frequency and soil moisture and nutrient concentration. Application of P fertiliser with a moderate defoliation pressure to promote legume growth and N fixation has the potential to achieve multiple benefits in increasing pasture and livestock production and improving environmental sustainability in the alpine pasture of Qinghai-Tibet Plateau, a fragile and P-deficient ecosystem zone in China and its western neighbouring countries. PMID:26513363

The impact of cattle and goats grazing on vegetation in oak stands of varying coppicing age

NASA Astrophysics Data System (ADS)

Papachristou, Thomas G.; Platis, Panayiotis D.

2011-01-01

The effects of cattle and goats grazing on oak shoot growth and herbaceous vegetation in three oak forest stands with different coppicing age (1, 4 and 7 yrs after the clear cutting) were investigated. In April 1997, an experimental area was chosen with three forest stands, which were clear cut in 1996 (CL1996), 1993 (CL1993), and 1990 (CL1990). All stands were grazed by cattle and goats after they were clear cut. In each forest stand, five 10 m × 10 m paired plots were located, which represented grazed and protected patches. Herbage biomass within protected and grazed plots was measured four times each year (spring: May-June, summer: July-August, autumn: September-October, and winter: November-December). Behavioural observations on grazing animals were conducted in the same periods. In both protected and open plots the height and basal diameter of all oak shoots on 5 preselected stumps were measured at the end of five growing periods from 1997 to 2001. All forest stands carried a similar amount of available herbage (averaged over forest stands and growing season, 2614 kg/ha). Grazing animals removed on average 1057 kg/ha throughout the growing period. Cattle mainly consumed herbage (97% of bites) while goats consumed a mixture of oak browse (41% bites), herbaceous species (34% bites), and other woody species browse (25% bites). The height, diameter and volume of oak shoots were affected by grazing. The three forest stands had similar shoot heights in the protected plots in 2001 after 5 years of grazing protection. The volume of oak shoots of the grazed plots were 146.7 cm3 for CL1996, 232.9 cm3 for CL1993, and 239.1 cm3 for CL1990 in 2001 (i.e. 5, 8, and 11 years grazing after the clear cuttings, respectively). The protected plots carried greater volumes of oak shoots, CL1996: 496.0 cm3 (few months grazing before protection), CL1993: 690.0 cm3 (4 years grazing before protection), and CL1990: 344.0 cm3 (7 years grazing before protection). In conclusion, almost half of the herbaceous vegetation was removed through grazing but it had no positive effect on the growth rate of oak shoots. It seems that goats, which selected almost half of their diet from oak shoots, are responsible for that relative negative growth of shoots. However, cattle grazed only herbs and may therefore control herbaceous vegetation.

Live-cell mass profiling: an emerging approach in quantitative biophysics.

PubMed

Zangle, Thomas A; Teitell, Michael A

2014-12-01

Cell mass, volume and growth rate are tightly controlled biophysical parameters in cellular development and homeostasis, and pathological cell growth defines cancer in metazoans. The first measurements of cell mass were made in the 1950s, but only recently have advances in computer science and microfabrication spurred the rapid development of precision mass-quantifying approaches. Here we discuss available techniques for quantifying the mass of single live cells with an emphasis on relative features, capabilities and drawbacks for different applications.

e-Dairy: a dynamic and stochastic whole-farm model that predicts biophysical and economic performance of grazing dairy systems.

PubMed

Baudracco, J; Lopez-Villalobos, N; Holmes, C W; Comeron, E A; Macdonald, K A; Barry, T N

2013-05-01

A whole-farm, stochastic and dynamic simulation model was developed to predict biophysical and economic performance of grazing dairy systems. Several whole-farm models simulate grazing dairy systems, but most of them work at a herd level. This model, named e-Dairy, differs from the few models that work at an animal level, because it allows stochastic behaviour of the genetic merit of individual cows for several traits, namely, yields of milk, fat and protein, live weight (LW) and body condition score (BCS) within a whole-farm model. This model accounts for genetic differences between cows, is sensitive to genotype × environment interactions at an animal level and allows pasture growth, milk and supplements price to behave stochastically. The model includes an energy-based animal module that predicts intake at grazing, mammary gland functioning and body lipid change. This whole-farm model simulates a 365-day period for individual cows within a herd, with cow parameters randomly generated on the basis of the mean parameter values, defined as input and variance and co-variances from experimental data sets. The main inputs of e-Dairy are farm area, use of land, type of pasture, type of crops, monthly pasture growth rate, supplements offered, nutritional quality of feeds, herd description including herd size, age structure, calving pattern, BCS and LW at calving, probabilities of pregnancy, average genetic merit and economic values for items of income and costs. The model allows to set management policies to define: dry-off cows (ceasing of lactation), target pre- and post-grazing herbage mass and feed supplementation. The main outputs are herbage dry matter intake, annual pasture utilisation, milk yield, changes in BCS and LW, economic farm profit and return on assets. The model showed satisfactory accuracy of prediction when validated against two data sets from farmlet system experiments. Relative prediction errors were <10% for all variables, and concordance correlation coefficients over 0.80 for annual pasture utilisation, yields of milk and milk solids (MS; fat plus protein), and of 0.69 and 0.48 for LW and BCS, respectively. A simulation of two contrasting dairy systems is presented to show the practical use of the model. The model can be used to explore the effects of feeding level and genetic merit and their interactions for grazing dairy systems, evaluating the trade-offs between profit and the associated risk.

Background for protective action recommendations: accidental radioactive contamination of food and animal feeds. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shleien, B.; Schmidt, G.D.; Chiacchierini, R.P.

This report provides background material for the development of FDA's Protective Action Recommendations: Accidental Radioactive Contamination of Food and Animal Feeds. The rationale, dosimetric and agricultural transport models for the Protective Action Guides are presented, along with information on dietary intake. In addition, the document contains a discussion of field methods of analysis of radionuclides deposited on the ground or contained in milk and herbage. Various protective actions are described and evaluated, and a cost-effectiveness analysis for the recommendations performed.

A new source of elemol rich essential oil and existence of multicellular oil glands in leaves of the Dioscorea species.

PubMed

Odimegwu, Joy I; Odukoya, Olukemi; Yadav, Ritesh K; Chanotiya, C S; Ogbonnia, Steve; Sangwan, Neelam S

2013-01-01

Dioscorea species is a very important food and drug plant. The tubers of the plant are extensively used in food and drug purposes owing to the presence of steroidal constituent's diosgenin in the tubers. In the present study, we report for the first time that the leaves of Dioscorea composita and Dioscorea floribunda grown under the field conditions exhibited the presence of multicellular oil glands on the epidermal layers of the plants using stereomicroscopy (SM) and scanning electron microscopy (SEM). Essential oil was also isolated from the otherwise not useful herbage of the plant, and gas chromatographic-mass spectroscopy analysis revealed confirmation of the essential oil constituents. Out of the 76 compounds detected in D. floribunda and 37 from D. composita essential oil, major terpenoids which are detected and reported for Dioscorea leaf essential oil are α -terpinene, nerolidol, citronellyl acetate, farnesol, elemol, α -farnesene, valerenyl acetate, and so forth. Elemol was detected as the major constituent of both the Dioscorea species occupying 41% and 22% of D. Floribunda and D. composita essential oils, respectively. In this paper, we report for the first time Dioscorea as a possible novel bioresource for the essential oil besides its well-known importance for yielding diosgenin.

[Effects of tourism disturbance on plant diversity in Qingshan Lake scenic area of Zhejiang Province].

PubMed

Lu, Qing-Bin; You, Wei-Yun; Zhao, Chang-Jie; Wang, Xiang-Wei; Meng-Xiang, Xiu

2011-02-01

From May 2007 to June 2008, an investigation was made on the changes of plant community in Qingshan Lake scenic area of Zhejiang Province under the effects of tourism disturbance. With the increase of tourism disturbance, the importance value of the plants was mainly fastened on a few species such as Pinus hwangshanensis, apt to decrease for tree and shrub species and to increase for herb species, and the individuals of the plants increased. The values of richness index (D) and diversity index (H) were in the order of medium disturbance > slight disturbance > severe disturbance, while the evenness index (J) value was in the order of medium disturbance > severe disturbance > slight disturbance. At the same vegetation layers, only a few species such as Cinnamomum camphora existed under different disturbances, and thereby, the similarity index values were smaller than 0.500. Slight disturbance affected coniferous forest most, with the average values of D, H, and J being the lowest (1.188, 1.056, and 0.697, respectively); severe disturbance affected broadleaf forest and shrub-herbage most, with the D value (2.013) of shrub-herbage and the H value (1.286) and J value (0.807) of broadleaf forest being the lowest; while medium disturbance was favorable to the increase of plant diversity and to the normal exertion of ecosystem function. The eco-safety of the structural elements of plant community in the scenic area was threatened to some extent, resulting in the reduction of indigenous species such as Sinocalycanthus chinensis and the incursion of exotic species as Setaria viridis.

Effect of timing of corn silage supplementation to Holstein dairy cows given limited daily access to pasture: intake and performance.

PubMed

Mattiauda, D A; Gibb, M J; Carriquiry, M; Tamminga, S; Chilibroste, P

2018-05-07

The timing in which supplements are provided in grazing systems can affect dry matter (DM) intake and productive performance. The objective of this study was to evaluate the effect of timing of corn silage supplementation on ingestive behaviour, DM intake, milk yield and composition in grazing dairy cows. In total, 33 Holstein dairy cows in a randomized block design grazed on a second-year mixed grass-legume pasture from 0900 to 1500 h and received 2.7 kg of a commercial supplement at each milking. Paddock sizes were adjusted to provide a daily herbage allowance of 15 kg DM/cow determined at ground level. The three treatments imposed each provided 3.8 kg DM/day of corn silage offered in a single meal at 0800 h (Treatment AM), equally distributed in two meals 0800 and 1700 h (Treatment AM-PM) or a single meal at 1700 h (Treatment PM). The experiment was carried out during the late autumn and early winter period, with 1 week of adaptation and 6 weeks of measurements. There were no differences between treatments in milk yield, but 4% fat-corrected milk yield tended to be greater in AM-PM than in AM cows, which did not differ from PM (23.7, 25.3 and 24.6±0.84 kg/day for AM, AM-PM and PM, respectively). Fat percentage and yield were greater for AM-PM than for AM cows and intermediate for PM cows (3.89 v. 3.66±0.072% and 1.00 v. 0.92±0.035 kg/day, respectively). Offering corn silage in two meals had an effect on herbage DM intake which was greater for AM-PM than AM cows and was intermediate in PM cows (8.5, 11.0 and 10.3±0.68 kg/day for AM, AM-PM and PM, respectively). During the 6-h period at pasture, the overall proportion of observations on which cows were grazing tended to be different between treatments and a clear grazing pattern along the grazing session (1-h observation period) was identified. During the time at pasture, the proportion of observations during which cows ruminated was positively correlated with the DM intake of corn silage immediately before turn out to pasture. The treatment effects on herbage DM intake did not sufficiently explain differences in productive performance. This suggests that the timing of the corn silage supplementation affected rumen kinetics and likewise the appearance of hunger and satiety signals as indicated by observed changes in temporal patterns of grazing and ruminating activities.

Conservation, fiber digestibility, and nutritive value of corn harvested at 2 cutting heights and ensiled with fibrolytic enzymes, either alone or with a ferulic acid esterase-producing inoculant.

PubMed

Lynch, J P; Baah, J; Beauchemin, K A

2015-02-01

The aim of this study was to determine the effects of the use of a fibrolytic enzyme product, applied at ensiling either alone or in combination with a ferulic acid esterase-producing bacterial additive, on the chemical composition, conservation characteristics, and in vitro degradability of corn silage harvested at either conventional or high cutting height. Triplicate samples of corn were harvested to leave stubble of either a conventional (15cm; NC) or high (45cm; HC) height above ground. Sub-samples of chopped herbage were ensiled untreated or with a fibrolytic enzyme product containing xylanases and cellulases applied either alone (ENZ) or in combination with a ferulic acid esterase-producing silage inoculant (ENZ+FAEI). The fibrolytic enzyme treatment was applied at 2mL of enzyme product/kg of herbage dry matter (DM), and the inoculant was applied at 1.3×10(5) cfu/g of fresh herbage. Samples were packed into laboratory-scale silos, stored for 7, 28, or 70 d, and analyzed for fermentation characteristics, and samples ensiled for 70 d were also analyzed for DM losses, chemical composition, and in vitro ruminal degradability. After 70 d of ensiling, the fermentation characteristics of corn silages were generally unaffected by cutting height, whereas the neutral detergent fiber, acid detergent fiber, and ash concentrations were lower and the starch concentration greater for silages made with crops harvested at HC compared with NC. After 70 d of ensiling, the acetic acid, ethanol concentrations, and the number of yeasts were greater, and the pH and neutral detergent fiber concentrations were lower, in silages produced using ENZ or ENZ+FAEI than the untreated silages, whereas ENZ+FAEI silages also incurred higher DM losses. No effect of additive treatment was observed on in vitro degradability indices after 48h ruminal incubation. The use of a fibrolytic enzyme product, either alone or in combination with a ferulic acid esterase-producing inoculant, at ensiling did not improve corn silage fermentation or its nutritive value and resulted in some negative effects on these parameters. The effects of using a fibrolytic enzyme product at ensiling, either alone or in combination with a ferulic acid esterase-producing inoculant, did not differ between corn harvested at either NC or HC. Silage made from HC had a greater starch content and lower fiber content than NC silage, whereas cutting height did not affect the in vitro digestibility indices. Copyright © 2015 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Quantifying Tropical Glacier Mass Balance Sensitivity to Climate Change Through Regional-Scale Modeling and The Randolph Glacier Inventory

NASA Astrophysics Data System (ADS)

Malone, A.

2017-12-01

Quantifying mass balance sensitivity to climate change is essential for forecasting glacier evolution and deciphering climate signals embedded in archives of past glacier changes. Ideally, these quantifications result from decades of field measurement, remote sensing, and a hierarchy modeling approach, but in data-sparse regions, such as the Himalayas and tropical Andes, regional-scale modeling rooted in first principles provides a first-order picture. Previous regional-scaling modeling studies have applied a surface energy and mass balance approach in order to quantify equilibrium line altitude sensitivity to climate change. In this study, an expanded regional-scale surface energy and mass balance model is implemented to quantify glacier-wide mass balance sensitivity to climate change for tropical Andean glaciers. Data from the Randolph Glacier Inventory are incorporated, and additional physical processes are included, such as a dynamic albedo and cloud-dependent atmospheric emissivity. The model output agrees well with the limited mass balance records for tropical Andean glaciers. The dominant climate variables driving interannual mass balance variability differ depending on the climate setting. For wet tropical glaciers (annual precipitation >0.75 m y-1), temperature is the dominant climate variable. Different hypotheses for the processes linking wet tropical glacier mass balance variability to temperature are evaluated. The results support the hypothesis that glacier-wide mass balance on wet tropical glaciers is largely dominated by processes at the lowest elevation where temperature plays a leading role in energy exchanges. This research also highlights the transient nature of wet tropical glaciers - the vast majority of tropical glaciers and a vital regional water resource - in an anthropogenic warming world.

Biochar incorporation into pasture soil suppresses in situ nitrous oxide emissions from ruminant urine patches.

PubMed

Taghizadeh-Toosi, Arezoo; Clough, Tim J; Condron, Leo M; Sherlock, Robert R; Anderson, Craig R; Craigie, Robin A

2011-01-01

Nitrous oxide (N2O) emissions from grazing animal excreta are estimated to be responsible for 1.5 Tg of the total 6.7 Tg of anthropogenic N2O emissions. This study was conducted to determine the in situ effect of incorporating biochar, into soil, on N2O emissions from bovine urine patches and associated pasture uptake of N. The effects of biochar rate (0-30 t ha(-1)), following soil incorporation, were investigated on ruminant urine-derived N2O fluxes, N uptake by pasture, and pasture yield. During an 86-d spring-summer period, where irrigation and rainfall occurred, the N2O fluxes from 15N labeled ruminant urine patches were reduced by >50%, after incorporating 30 t ha(-1) of biochar. Taking into account the N2O emissions from the control plots, 30 t ha(-1) ofbiochar reduced the N2O emission factor from urine by 70%. The atom% 15N enrichment of the N2O emitted was lower in the 30 t ha(-1) biochar treatment, indicating less urine-N contributed to the N2O flux. Soil NO3- -N concentrations were lower with increasing biochar rate during the first 30 d following urine deposition. No differences occurred, due to biochar addition, with respect to dry matter yields, herbage N content, or recovery of 15N applied in herbage. Incorporating biochar into the soil can significantly diminish ruminant urine-derived N2O emissions. Further work is required to determine the persistence of the observed effect and to fully understand the mechanism(s) of the observed reduction in N2O fluxes.

[Recovery of Trichostrongylus colubriformis infective larvae from three grass species contaminated in summer].

PubMed

Rocha, Raquel A da; Rocha, Gilberto P da; Bricarello, Patrizia A; Amarante, Alessandro F T

2008-01-01

The purpose of the experiment was to evaluate infective Trichostrongylus colubriformis larvae (L3) survival in three forage species. Experimental plots, planted with Brachiaria decumbens cv. Australian, Cynodon dactilon cv. Coast-cross, and Panicum maximum cv. Aruana, were used in the study, totaling two plots for each species. Each plot (32.4 m(2)) was divided into 36 subplots (30 x 30 cm) in order to allow six replicates per forage species and per herbage height in each week of material collection. Larval recovery was evaluated from middle summer to middle autumn under the effect of two forage paring heights: low, 5 cm, and high, 30 cm. The paring was carried out immediately before the fecal samples with T. colubriformis eggs, taken from sheep, were deposited on pasture in 05/Feb/2004. Feces and forage collection was performed one, two, four, eight, 12 and 16 weeks after feces deposition in the experimental plots. Forage grass height was measured in each subdivision immediately before the collections. The forage sample was cut, close to the soil, from an area delimited with a circle with a 10 cm radius. The feces were collected from the subplots. The number of infective larvae recovered from pasture was very small in comparison with the amount of larvae produced in cultures maintained in laboratory (maximum 6.7% on Aruana grass with 30 cm). L3 recovery rates from fecal samples were bigger when the feces were deposited on high grass (measuring 30 cm - P<0.05). L3 recovery from pasture and L3 concentration on herbage (L3/Kg dry matter) were similar for both cuts (P>0.05). Among the forage species, the Aruana grass was the one that, in general, harbored the biggest concentrations of infective T. colubriformis larvae.

[Carbon Source Utilization Characteristics of Soil Microbial Community for Apple Orchard with Interplanting Herbage].

PubMed

Du, Yi-fei; Fang, Kai-kai; Wang, Zhi-kang; Li, Hui-ke; Mao, Peng-juan; Zhang, Xiang-xu; Wang, Jing

2015-11-01

As soil fertility in apple orchard with clean tillage is declined continuously, interplanting herbage in orchard, which is a new orchard management model, plays an important role in improving orchard soil conditions. By using biolog micro-plate technique, this paper studied the functional diversity of soil microbial community under four species of management model in apple orchards, including clear tillage model, interplanting white clover model, interplanting small crown flower model and interplanting cocksfoot model, and the carbon source utilization characteristics of microbial community were explored, which could provide a reference for revealing driving mechanism of ecological process of orchard soil. The results showed that the functional diversity of microbial community had a significant difference among different treatments and in the order of white clover > small crown flower > cocksfoot > clear tillage. The correlation analysis showed that the average well color development (AWCD), Shannon index, Richness index and McIntosh index were all highly significantly positively correlated with soil organic carbon, total nitrogen, microbial biomass carbon, and Shannon index was significantly positively correlated with soil pH. The principal component analysis and the fingerprints of the physiological carbon metabolism of the microbial community demonstrated that grass treatments improved carbon source metabolic ability of soil microbial community, and the soil microbes with perennial legumes (White Clover and small crown flower) had a significantly higher utilization rate in carbohydrates (N-Acetyl-D-Glucosamine, D-Mannitol, β-Methyl-D-Glucoside), amino acids (Glycyl-L-Glutamic acid, L-Serine, L-Threonine) and polymers (Tween 40, Glycogen) than the soil microbes with clear tillage. It was considered that different treatments had the unique microbial community structure and peculiar carbon source utilization characteristics.

Quantitative Mass Spectrometry by Isotope Dilution and Multiple Reaction Monitoring (MRM).

PubMed

Russo, Paul; Hood, Brian L; Bateman, Nicholas W; Conrads, Thomas P

2017-01-01

Selected reaction monitoring (SRM) is used in molecular profiling to detect and quantify specific known proteins in complex mixtures. Using isotope dilution (Barnidge et al., Anal Chem 75(3):445-451, 2003) methodologies, peptides can be quantified without the need for an antibody-based method. Selected reaction monitoring assays employ electrospray ionization mass spectrometry (ESI-MS) followed by two stages of mass selection: a first stage where the mass of the peptide ion is selected and, after fragmentation by collision-induced dissociation (CID), a second stage (tandem MS) where either a single (e.g., SRM) or multiple (multiple reaction monitoring, MRM) specific peptide fragment ions are transmitted for detection. The MRM experiment is accomplished by specifying the parent masses of the selected endogenous and isotope-labeled peptides for MS/MS fragmentation and then monitoring fragment ions of interest, using their intensities/abundances and relative ratios to quantify the parent protein of interest. In this example protocol, we will utilize isotope dilution MRM-MS to quantify in absolute terms the total levels of the protein of interest, ataxia telangiectasia mutated (ATM) serine/threonine protein kinase. Ataxia telangiectasia mutated (ATM) phosphorylates several key proteins that initiate activation of the DNA damage checkpoint leading to cell cycle arrest.

Multi-Component Molecular-Level Body Composition Reference Methods: Evolving Concepts and Future Directions

PubMed Central

Heymsfield, Steven B.; Ebbeling, Cara B.; Zheng, Jolene; Pietrobelli, Angelo; Strauss, Boyd J.; Silva, Analiza M.; Ludwig, David S.

2015-01-01

Excess adiposity is the main phenotypic feature that defines human obesity and that plays a pathophysiological role in most chronic diseases. Measuring the amount of fat mass present is thus a central aspect of studying obesity at the individual and population levels. Nevertheless, a consensus is lacking among investigators on a single accepted “reference” approach for quantifying fat mass in vivo. While the research community generally relies on the multicomponent body-volume class of “reference” models for quantifying fat mass, no definable guide discerns among different applied equations for partitioning the four (fat, water, protein, and mineral mass) or more quantified components, standardizes “adjustment” or measurement system approaches for model-required labeled water dilution volumes and bone mineral mass estimates, or firmly establishes the body temperature at which model physical properties are assumed. The resulting differing reference strategies for quantifying body composition in vivo leads to small but under some circumstances important differences in the amount of measured body fat. Recent technological advances highlight opportunities to expand model applications to new subject groups and measured components such as total body protein. The current report reviews the historical evolution of multicomponent body volume-based methods in the context of prevailing uncertainties and future potential. PMID:25645009

Mass spectroscopic apparatus and method

DOEpatents

Bomse, David S.; Silver, Joel A.; Stanton, Alan C.

1991-01-01

The disclosure is directed to a method and apparatus for ionization modulated mass spectrometric analysis. Analog or digital data acquisition and processing can be used. Ions from a time variant source are detected and quantified. The quantified ion output is analyzed using a computer to provide a two-dimensional representation of at least one component present within an analyte.

Incorporating both physical and kinetic limitations in quantifying dissolved oxygen flux to aquatic sediments

USGS Publications Warehouse

O'Connor, B.L.; Hondzo, Miki; Harvey, J.W.

2009-01-01

Traditionally, dissolved oxygen (DO) fluxes have been calculated using the thin-film theory with DO microstructure data in systems characterized by fine sediments and low velocities. However, recent experimental evidence of fluctuating DO concentrations near the sediment-water interface suggests that turbulence and coherent motions control the mass transfer, and the surface renewal theory gives a more mechanistic model for quantifying fluxes. Both models involve quantifying the mass transfer coefficient (k) and the relevant concentration difference (??C). This study compared several empirical models for quantifying k based on both thin-film and surface renewal theories, as well as presents a new method for quantifying ??C (dynamic approach) that is consistent with the observed DO concentration fluctuations near the interface. Data were used from a series of flume experiments that includes both physical and kinetic uptake limitations of the flux. Results indicated that methods for quantifying k and ??C using the surface renewal theory better estimated the DO flux across a range of fluid-flow conditions. ?? 2009 ASCE.

Live cell interferometry quantifies dynamics of biomass partitioning during cytokinesis.

PubMed

Zangle, Thomas A; Teitell, Michael A; Reed, Jason

2014-01-01

The equal partitioning of cell mass between daughters is the usual and expected outcome of cytokinesis for self-renewing cells. However, most studies of partitioning during cell division have focused on daughter cell shape symmetry or segregation of chromosomes. Here, we use live cell interferometry (LCI) to quantify the partitioning of daughter cell mass during and following cytokinesis. We use adherent and non-adherent mouse fibroblast and mouse and human lymphocyte cell lines as models and show that, on average, mass asymmetries present at the time of cleavage furrow formation persist through cytokinesis. The addition of multiple cytoskeleton-disrupting agents leads to increased asymmetry in mass partitioning which suggests the absence of active mass partitioning mechanisms after cleavage furrow positioning.

Attomole quantitation of protein separations with accelerator mass spectrometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vogel, J S; Grant, P G; Buccholz, B A

2000-12-15

Quantification of specific proteins depends on separation by chromatography or electrophoresis followed by chemical detection schemes such as staining and fluorophore adhesion. Chemical exchange of short-lived isotopes, particularly sulfur, is also prevalent despite the inconveniences of counting radioactivity. Physical methods based on isotopic and elemental analyses offer highly sensitive protein quantitation that has linear response over wide dynamic ranges and is independent of protein conformation. Accelerator mass spectrometry quantifies long-lived isotopes such as 14C to sub-attomole sensitivity. We quantified protein interactions with small molecules such as toxins, vitamins, and natural biochemicals at precisions of 1-5% . Micro-proton-induced-xray-emission quantifies elemental abundancesmore » in separated metalloprotein samples to nanogram amounts and is capable of quantifying phosphorylated loci in gels. Accelerator-based quantitation is a possible tool for quantifying the genome translation into proteome.« less

Chemical Mass Balance (CMB) Model

EPA Pesticide Factsheets

The EPA-CMB Version 8.2 uses source profiles and speciated ambient data to quantify source contributions. Contributions are quantified from chemically distinct source-types rather than from individual emitters.

Land motion due to 20th century mass balance of the Greenland Ice Sheet

NASA Astrophysics Data System (ADS)

Kjeldsen, K. K.; Khan, S. A.

2017-12-01

Quantifying the contribution from ice sheets and glaciers to past sea level change is of great value for understanding sea level projections into the 21st century. However, quantifying and understanding past changes are equally important, in particular understanding the impact in the near-field where the signal is highest. We assess the impact of 20th century mass balance of the Greenland Ice Sheet on land motion using results from Kjeldsen et al, 2015. These results suggest that the ice sheet on average lost a minimum of 75 Gt/yr, but also show that the mass balance was highly spatial- and temporal variable, and moreover that on a centennial time scale changes were driven by a decreasing surface mass balance. Based on preliminary results we discuss land motion during the 20th century due to mass balance changes and the driving components surface mass balance and ice dynamics.

The Use of Gas Chromatography and Mass Spectrometry to Introduce General Chemistry Students to Percent Mass and Atomic Mass Calculations

ERIC Educational Resources Information Center

Pfennig, Brian W.; Schaefer, Amy K.

2011-01-01

A general chemistry laboratory experiment is described that introduces students to instrumental analysis using gas chromatography-mass spectrometry (GC-MS), while simultaneously reinforcing the concepts of mass percent and the calculation of atomic mass. Working in small groups, students use the GC to separate and quantify the percent composition…

On the link between energy equipartition and radial variation in the stellar mass function of star clusters

NASA Astrophysics Data System (ADS)

Webb, Jeremy J.; Vesperini, Enrico

2017-01-01

We make use of N-body simulations to determine the relationship between two observable parameters that are used to quantify mass segregation and energy equipartition in star clusters. Mass segregation can be quantified by measuring how the slope of a cluster's stellar mass function α changes with clustercentric distance r, and then calculating δ _α = d α (r)/d ln(r/r_m), where rm is the cluster's half-mass radius. The degree of energy equipartition in a cluster is quantified by η, which is a measure of how stellar velocity dispersion σ depends on stellar mass m via σ(m) ∝ m-η. Through a suite of N-body star cluster simulations with a range of initial sizes, binary fractions, orbits, black hole retention fractions, and initial mass functions, we present the co-evolution of δα and η. We find that measurements of the global η are strongly affected by the radial dependence of σ and mean stellar mass and the relationship between η and δα depends mainly on the cluster's initial conditions and the tidal field. Within rm, where these effects are minimized, we find that η and δα initially share a linear relationship. However, once the degree of mass segregation increases such that the radial dependence of σ and mean stellar mass become a factor within rm, or the cluster undergoes core collapse, the relationship breaks down. We propose a method for determining η within rm from an observational measurement of δα. In cases where η and δα can be measured independently, this new method offers a way of measuring the cluster's dynamical state.

Mass spectrometric immunoassay

DOEpatents

Nelson, Randall W; Williams, Peter; Krone, Jennifer Reeve

2007-12-04

Rapid mass spectrometric immunoassay methods for detecting and/or quantifying antibody and antigen analytes utilizing affinity capture to isolate the analytes and internal reference species (for quantification) followed by mass spectrometric analysis of the isolated analyte/internal reference species. Quantification is obtained by normalizing and calibrating obtained mass spectrum against the mass spectrum obtained for an antibody/antigen of known concentration.

Mass spectrometric immunoassay

DOEpatents

Nelson, Randall W; Williams, Peter; Krone, Jennifer Reeve

2013-07-16

Rapid mass spectrometric immunoassay methods for detecting and/or quantifying antibody and antigen analytes utilizing affinity capture to isolate the analytes and internal reference species (for quantification) followed by mass spectrometric analysis of the isolated analyte/internal reference species. Quantification is obtained by normalizing and calibrating obtained mass spectrum against the mass spectrum obtained for an antibody/antigen of known concentration.

Mass spectrometric immunoassay

DOEpatents

Nelson, Randall W.; Williams, Peter; Krone, Jennifer Reeve

2005-12-13

Rapid mass spectrometric immunoassay methods for detecting and/or quantifying antibody and antigen analytes utilizing affinity capture to isolate the analytes and internal reference species (for quantification) followed by mass spectrometric analysis of the isolated analyte/internal reference species. Quantification is obtained by normalizing and calibrating obtained mass spectrum against the mass spectrum obtained for an antibody/antigen of known concentration.

Performance of beef cows and calves fed different sources of rumen-degradable protein when grazing stockpiled limpograss pastures.

PubMed

Aguiar, A D; Vendramini, J M B; Arthington, J D; Sollenberger, L E; DiLorenzo, N; Hersom, M J

2015-04-01

Two experiments evaluated the effects of different sources of RDP on forage characteristics, animal performance, and ruminal and blood parameters of beef cattle grazing stockpiled limpograss (Hemarthria altissima) from January to May 2011 and 2012. In Exp. 1, 24 mature lactating beef cows and their respective calves were allocated to 8 stockpiled limpograss pastures (3 pairs/pasture). Treatments were 2 different sources of RDP, urea or cottonseed (Gossypium spp.) meal (CSM), distributed in a completely randomized design with 4 replicates. Feather meal and corn (Zea mays) meal were added to the urea treatments to balance RUP and energy. Treatments were mixed in sugarcane (Saccharum officinarum) molasses, which resulted in 3 kg DM/cow per day of supplement. There were no differences (P > 0.10) in herbage mass (HM; 3,200 ± 400 kg DM/ha), herbage allowance (HA; 1.9 ± 0.2 kg DM/kg of BW), CP (5.2 ± 0.2%), and in vitro digestible organic matter (IVDOM; 47 ± 0.5%) concentrations. There was a decrease (P < 0.10) in HM (from 4,100 to 2,600 kg/ha), IVDOM (from 46 to 39.9%), and HA (from 2.5 to 1.4 kg DM/kg BW) from January to March. Cow ADG (0.23 ± 0.08 kg/d), BCS (4.6 ± 0.2), milk yield (7.0 ± 0.4 kg/d), and plasma urea nitrogen (PUN; 16.1 ± 0.8 mg/dL) and calf ADG (0.71 ± 0.05 kg/d) were similar (P > 0.10) among treatments. Sixteen cow-calf pairs were moved to 8 drylot pens after Exp. 1, maintained on the same treatment, and evaluated for forage and total DMI. There was no difference in forage (P = 0.16; 2.1 ± 0.1% BW) and total DMI (P = 0.12; 2.5 ± 0.1% BW) between treatments. In Exp. 2, 2 rumen-cannulated steers were used in a 2 × 2 Latin square design, replicated in 2011 and 2012, to test the effects of the same treatments on rumen fluid and blood parameters. There was no difference (P > 0.10) in ruminal NH3-N (12.9 ± 0.3 mg/dL), pH (6.5 ± 0.1), propionic acid (25 ± 2.2 mol/100 mol), acetic acid (69.2 ± 2.9 mol/100 mol), and butyric acid (4.5 ± 0.5 mol/100 mol) as well as branched-chain VFA (1.3 ± 2.2 mol/100 mol) concentrations in the rumen. In addition, there was no difference (P = 0.91) in PUN (7.9 ± 0.3 mg/dL) concentration between treatments. Therefore, urea can be as effective as CSM as the main source of RDP in the molasses-based supplement offered to mature lactating beef cows grazing stockpiled limpograss pastures.

Phytoestrogens and Their Metabolites in Bulk-Tank Milk: Effects of Farm Management and Season

PubMed Central

Adler, Steffen A.; Purup, Stig; Hansen-Møller, Jens; Thuen, Erling; Steinshamn, Håvard

2015-01-01

Phytoestrogens have structures similar to endogenous steroids and may induce or inhibit the response of hormone receptors. The objectives of the present study were to compare the effects of long-term vs. short-term grassland management in organic and conventional dairy production systems, compare organic and conventional production systems and assess seasonal variation on phytoestrogen concentrations in bulk-tank milk. The concentrations of phytoestrogens were analyzed in bulk-tank milk sampled three times in two subsequent years from 28 dairy farms: Fourteen organic (ORG) dairy farms with either short-term or long-term grassland management were paired with 14 conventional (CON) farms with respect to grassland management. Grassland management varied in terms of time since establishment. Short-term grassland management (SG) was defined as establishment or reseeding every fourth year or more often, and long-term grassland management (LG) was defined as less frequent establishment or reseeding. The proportion of red clover (Trifolium pretense L.) in the herbage was positively correlated with milk concentrations of the mammalian isoflavone equol. Therefore, organically produced bulk-tank milk contained more equol than conventionally produced milk, and milk from ORG-SG farms had more equol than milk from ORG-LG farms. Milk produced during the indoor-feeding periods had more equol than milk produced during the outdoor feeding period, because pastures contained less red clover than fields intended for silage production. Organically produced milk had also higher concentrations of the mammalian lignan enterolactone, but in contrast to equol, concentrations increased in the outdoor-feeding periods compared to the indoor-feeding periods. There were no indications of fertility problems on ORG-SG farms who had the highest red clover proportions in the herbage. This study shows that production system, grassland management, and season affect milk concentrations of phytoestrogens. However, compared to soy products, milk concentrations of phytoestrogens are low and future studies are required to investigate if the intake of phytoestrogens from dairy products has physiological effects in humans. PMID:25996600

Forage choice in pasturelands: Influence on cattle foraging behavior and performance.

PubMed

Villalba, J J; Cabassu, R; Gunter, S A

2015-04-01

We determined if combinations of adjacent pastures of 3 forage species led to complementary relationships that influenced animal behavior and performance over monocultures. Grazing bouts, behavioral levels of activity, blood urea N (BUN), chemical composition of feces, BW, and herbage biomass before and after grazing were monitored when beef calves strip-grazed 3 replications of 4 treatments from June 14 through August 23, 2013 (9 animals/treatment). Animals grazed monocultures of: 1) tall fescue (TF), 2) alfalfa (ALF), 3) sainfoin (SAN), or 4) a choice of strips of forages TF, ALF, and SAN (CHOICE). The lowest and greatest incidence of foraging bouts occurred for cattle in CHOICE and SAN, respectively (P < 0.01). Animals in CHOICE grazed SAN > ALF > TF (P < 0.01). Animals on TF and CHOICE took greater number of steps than animals grazing a monocultures of either legume (P = 0.01). Calves in TF had lower BUN (P < 0.01) and fecal CP concentration (P < 0.01) than calves grazing the remaining treatments, whereas animals in SAN showed the greatest concentrations of fecal CP (P < 0.01). Fecal NDF concentration was the greatest for animals grazing TF and the lowest for animals grazing SAN (P < 0.01), whereas fecal ADF concentration was greater for animals grazing TF and SAN than for animals grazing CHOICE and ALF (P = 0.02). Calcium, Mg, and Zn concentrations were the lowest in feces from calves grazing TF and the greatest for calves grazing a monoculture of either legume (P < 0.05). When averaging both periods, animals grazing SAN, ALF, or CHOICE gained more BW than animals grazing TF (P < 0.01). Thus, calves in CHOICE incorporated tall fescue into their diets, were more active, and displayed a lower number of grazing bouts than calves grazing monoculture of either legume. Herbage diversity may lead to levels of ADG comparable to legume monocultures with the potential benefit of maintaining plant species diversity in pasturelands.

Comprehensive quantification of triacylglycerols in soybean seeds by electrospray ionization mass spectrometry with multiple neutral loss scans

DOE PAGES

Li, Maoyin; Butka, Emily; Wang, Xuemin

2014-10-10

Soybean seeds are an important source of vegetable oil and biomaterials. The content of individual triacylglycerol species (TAG) in soybean seeds is difficult to quantify in an accurate and rapid way. The present study establishes an approach to quantify TAG species in soybean seeds utilizing an electrospray ionization tandem mass spectrometry with multiple neutral loss scans. Ten neutral loss scans were performed to detect the fatty acyl chains of TAG, including palmitic (P, 1650), linolenic (Ln, 1853), linoleic (L, 1852), oleic (O, 1851), stearic (S, 1850), eicosadienoic (2052), gadoleic (2051), arachidic (2050), erucic (2251), and behenic (2250). The abundance ofmore » ten fatty acyl chains at 46 TAG masses (mass-to-charge ratio, m/z) were determined after isotopic deconvolution and correction by adjustment factors at each TAG mass. The direct sample infusion and multiple internal standards correction allowed a rapid and accurate quantification of TAG species. Ninety-three TAG species were resolved and their levels were determined.The most abundant TAG species were LLL, OLL, LLLn, PLL, OLLn, OOL, POL, and SLL. Many new species were detected and quantified. As a result, this shotgun lipidomics approach should facilitate the study of TAG metabolism and genetic breeding of soybean seeds for desirable TAG content and composition.« less

Quantifying the Labeling and the Levels of Plant Cell Wall Precursors Using Ion Chromatography Tandem Mass Spectrometry1[W][OA

PubMed Central

Alonso, Ana P.; Piasecki, Rebecca J.; Wang, Yan; LaClair, Russell W.; Shachar-Hill, Yair

2010-01-01

The biosynthesis of cell wall polymers involves enormous fluxes through central metabolism that are not fully delineated and whose regulation is poorly understood. We have established and validated a liquid chromatography tandem mass spectrometry method using multiple reaction monitoring mode to separate and quantify the levels of plant cell wall precursors. Target analytes were identified by their parent/daughter ions and retention times. The method allows the quantification of precursors at low picomole quantities with linear responses up to the nanomole quantity range. When applying the technique to Arabidopsis (Arabidopsis thaliana) T87 cell cultures, 16 hexose-phosphates (hexose-Ps) and nucleotide-sugars (NDP-sugars) involved in cell wall biosynthesis were separately quantified. Using hexose-P and NDP-sugar standards, we have shown that hot water extraction allows good recovery of the target metabolites (over 86%). This method is applicable to quantifying the levels of hexose-Ps and NDP-sugars in different plant tissues, such as Arabidopsis T87 cells in culture and fenugreek (Trigonella foenum-graecum) endosperm tissue, showing higher levels of galacto-mannan precursors in fenugreek endosperm. In Arabidopsis cells incubated with [U-13CFru]sucrose, the method was used to track the labeling pattern in cell wall precursors. As the fragmentation of hexose-Ps and NDP-sugars results in high yields of [PO3]−/or [H2PO4]− ions, mass isotopomers can be quantified directly from the intensity of selected tandem mass spectrometry transitions. The ability to directly measure 13C labeling in cell wall precursors makes possible metabolic flux analysis of cell wall biosynthesis based on dynamic labeling experiments. PMID:20442274

In-N-Out: The Gas Cycle from Dwarfs to Spiral Galaxies

NASA Astrophysics Data System (ADS)

Christensen, Charlotte R.; Davé, Romeel; Governato, Fabio; Pontzen, Andrew; Brooks, Alyson; Munshi, Ferah; Quinn, Thomas; Wadsley, James

2016-06-01

We examine the scalings of galactic outflows with halo mass across a suite of 20 high-resolution cosmological zoom galaxy simulations covering halo masses in the range {10}9.5{--}{10}12 {M}⊙ . These simulations self-consistently generate outflows from the available supernova energy in a manner that successfully reproduces key galaxy observables, including the stellar mass-halo mass, Tully-Fisher, and mass-metallicity relations. We quantify the importance of ejective feedback to setting the stellar mass relative to the efficiency of gas accretion and star formation. Ejective feedback is increasingly important as galaxy mass decreases; we find an effective mass loading factor that scales as {v}{{circ}}-2.2, with an amplitude and shape that are invariant with redshift. These scalings are consistent with analytic models for energy-driven wind, based solely on the halo potential. Recycling is common: about half of the outflow mass across all galaxy masses is later reaccreted. The recycling timescale is typically ˜1 Gyr, virtually independent of halo mass. Recycled material is reaccreted farther out in the disk and with typically ˜2-3 times more angular momentum. These results elucidate and quantify how the baryon cycle plausibly regulates star formation and alters the angular momentum distribution of disk material across the halo mass range where most cosmic star formation occurs.

Intrinsic Bioprobes, Inc. (Tempe, AZ)

DOEpatents

Nelson, Randall W [Phoenix, AZ; Williams, Peter [Phoenix, AZ; Krone, Jennifer Reeve [Granbury, TX

2008-07-15

Rapid mass spectrometric immunoassay methods for detecting and/or quantifying antibody and antigen analytes utilizing affinity capture to isolate the analytes and internal reference species (for quantification) followed by mass spectrometric analysis of the isolated analyte/internal reference species. Quantification is obtained by normalizing and calibrating obtained mass spectrum against the mass spectrum obtained for an antibody/antigen of known concentration.

Surface area-volume ratios in insects.

PubMed

Kühsel, Sara; Brückner, Adrian; Schmelzle, Sebastian; Heethoff, Michael; Blüthgen, Nico

2017-10-01

Body mass, volume and surface area are important for many aspects of the physiology and performance of species. Whereas body mass scaling received a lot of attention in the literature, surface areas of animals have not been measured explicitly in this context. We quantified surface area-volume (SA/V) ratios for the first time using 3D surface models based on a structured light scanning method for 126 species of pollinating insects from 4 orders (Diptera, Hymenoptera, Lepidoptera, and Coleoptera). Water loss of 67 species was measured gravimetrically at very dry conditions for 2 h at 15 and 30 °C to demonstrate the applicability of the new 3D surface measurements and relevance for predicting the performance of insects. Quantified SA/V ratios significantly explained the variation in water loss across species, both directly or after accounting for isometric scaling (residuals of the SA/V ∼ mass 2/3 relationship). Small insects with a proportionally larger surface area had the highest water loss rates. Surface scans of insects to quantify allometric SA/V ratios thus provide a promising method to predict physiological responses, improving the potential of body mass isometry alone that assume geometric similarity. © 2016 Institute of Zoology, Chinese Academy of Sciences.

Revisiting soil carbon and nitrogen sampling: quantitative pits versus rotary cores

USDA-ARS?s Scientific Manuscript database

Increasing atmospheric carbon dioxide and its feedbacks with global climate have sparked renewed interest in quantifying ecosystem carbon (C) budgets, including quantifying belowground pools. Belowground nutrient budgets require accurate estimates of soil mass, coarse fragment content, and nutrient ...

PyQuant: A Versatile Framework for Analysis of Quantitative Mass Spectrometry Data*

PubMed Central

Mitchell, Christopher J.; Kim, Min-Sik; Na, Chan Hyun; Pandey, Akhilesh

2016-01-01

Quantitative mass spectrometry data necessitates an analytical pipeline that captures the accuracy and comprehensiveness of the experiments. Currently, data analysis is often coupled to specific software packages, which restricts the analysis to a given workflow and precludes a more thorough characterization of the data by other complementary tools. To address this, we have developed PyQuant, a cross-platform mass spectrometry data quantification application that is compatible with existing frameworks and can be used as a stand-alone quantification tool. PyQuant supports most types of quantitative mass spectrometry data including SILAC, NeuCode, 15N, 13C, or 18O and chemical methods such as iTRAQ or TMT and provides the option of adding custom labeling strategies. In addition, PyQuant can perform specialized analyses such as quantifying isotopically labeled samples where the label has been metabolized into other amino acids and targeted quantification of selected ions independent of spectral assignment. PyQuant is capable of quantifying search results from popular proteomic frameworks such as MaxQuant, Proteome Discoverer, and the Trans-Proteomic Pipeline in addition to several standalone search engines. We have found that PyQuant routinely quantifies a greater proportion of spectral assignments, with increases ranging from 25–45% in this study. Finally, PyQuant is capable of complementing spectral assignments between replicates to quantify ions missed because of lack of MS/MS fragmentation or that were omitted because of issues such as spectra quality or false discovery rates. This results in an increase of biologically useful data available for interpretation. In summary, PyQuant is a flexible mass spectrometry data quantification platform that is capable of interfacing with a variety of existing formats and is highly customizable, which permits easy configuration for custom analysis. PMID:27231314

A New Approach To Selectively Identify And Quantify Perfluorochemicals In Complex Matrices Using Ion Trap Time-Of-Flight Mass Spectrometry

EPA Science Inventory

Most of the published studies focusing on the environmental and biological distribution of perfluorinated alkyl compounds (PFCs) have used triple quadrupole mass spectrometers for compound identification and quantitation. Multiple-reaction-monitoring (MRM) is a sensitive mass sp...

Stable isotope labeling tandem mass spectrometry (SILT) to quantify protein production and clearance rates

PubMed Central

Bateman, Randall J.; Munsell, Ling Y.; Chen, Xianghong; Holtzman, David M.; Yarasheski, Kevin E.

2007-01-01

In all biological systems, protein amount is a function of the rate of production and clearance. The speed of a response to a disturbance in protein homeostasis is determined by turnover rate. Quantifying alterations in protein synthesis and clearance rates is vital to understanding disease pathogenesis (e.g., aging, inflammation). No methods exist for quantifying production and clearance rates of low abundance (femtomole) proteins in vivo. We describe a novel, mass spectrometry-based method for quantitating low abundance protein synthesis and clearance rates in vitro and in vivo in animals and humans. The utility of this method is demonstrated with amyloid-beta (Aß), an important low abundance protein involved in Alzheimer's disease pathogenesis. We used in vivo stable isotope labeling, immunoprecipitation of Aß from cerebrospinal fluid, and quantitative liquid chromatography electrospray-ionization tandem mass spectrometry (LC-ESI-tandem MS) to quantify human Aß protein production and clearance rates. The method is sensitive and specific for stable isotope labeled amino acid incorporation into CNS (± 1% accuracy). This in vivo method can be used to identify pathophysiologic changes in protein metabolism; and may serve as a biomarker for monitoring disease risk, progression, or response to novel therapeutic agents. The technique is adaptable to other macromolecules, such as carbohydrates or lipids. PMID:17383190

Estimating the mass variance in neutron multiplicity counting-A comparison of approaches

NASA Astrophysics Data System (ADS)

Dubi, C.; Croft, S.; Favalli, A.; Ocherashvili, A.; Pedersen, B.

2017-12-01

In the standard practice of neutron multiplicity counting , the first three sampled factorial moments of the event triggered neutron count distribution are used to quantify the three main neutron source terms: the spontaneous fissile material effective mass, the relative (α , n) production and the induced fission source responsible for multiplication. This study compares three methods to quantify the statistical uncertainty of the estimated mass: the bootstrap method, propagation of variance through moments, and statistical analysis of cycle data method. Each of the three methods was implemented on a set of four different NMC measurements, held at the JRC-laboratory in Ispra, Italy, sampling four different Pu samples in a standard Plutonium Scrap Multiplicity Counter (PSMC) well counter.

Estimating the mass variance in neutron multiplicity counting $-$ A comparison of approaches

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dubi, C.; Croft, S.; Favalli, A.

In the standard practice of neutron multiplicity counting, the first three sampled factorial moments of the event triggered neutron count distribution are used to quantify the three main neutron source terms: the spontaneous fissile material effective mass, the relative (α,n) production and the induced fission source responsible for multiplication. This study compares three methods to quantify the statistical uncertainty of the estimated mass: the bootstrap method, propagation of variance through moments, and statistical analysis of cycle data method. Each of the three methods was implemented on a set of four different NMC measurements, held at the JRC-laboratory in Ispra, Italy,more » sampling four different Pu samples in a standard Plutonium Scrap Multiplicity Counter (PSMC) well counter.« less

Estimating the mass variance in neutron multiplicity counting $-$ A comparison of approaches

DOE PAGES

Dubi, C.; Croft, S.; Favalli, A.; ...

2017-09-14

In the standard practice of neutron multiplicity counting, the first three sampled factorial moments of the event triggered neutron count distribution are used to quantify the three main neutron source terms: the spontaneous fissile material effective mass, the relative (α,n) production and the induced fission source responsible for multiplication. This study compares three methods to quantify the statistical uncertainty of the estimated mass: the bootstrap method, propagation of variance through moments, and statistical analysis of cycle data method. Each of the three methods was implemented on a set of four different NMC measurements, held at the JRC-laboratory in Ispra, Italy,more » sampling four different Pu samples in a standard Plutonium Scrap Multiplicity Counter (PSMC) well counter.« less

Estimation of terpene content in loblolly pine biomass using a hybrid fast-GC and pyrolysis-molecular beam mass spectrometry method

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harman-Ware, Anne E.; Davis, Mark F.; Peter, Gary F.

Terpenes can be used as renewable fuels and chemicals and quantifying their presence in biomass is becoming increasingly important. A novel method was developed to rapidly quantify total diterpenoid resin acids using pyrolysis-molecular beam mass spectrometry (py-MBMS). Pine sapling monoterpenes and diterpenoids were extracted from wood using a 1:1 (v/v) mixture of hexane and acetone and analyses were performed before and after extraction to determine the extraction efficiency of the solvent system. The resulting extract was analyzed for total diterpenoid content using py-MBMS and was combined with total monoterpene content that was determined using a low thermal mass modular acceleratedmore » column heater (LTM MACH) fast-GC/FID to measure the terpene content present in pine saplings. Oleoresin extruded from larger pine trees was used to validate mass balance closure of the terpene content in the extract solvent.« less

Estimation of terpene content in loblolly pine biomass using a hybrid fast-GC and pyrolysis-molecular beam mass spectrometry method

DOE PAGES

Harman-Ware, Anne E.; Davis, Mark F.; Peter, Gary F.; ...

2017-01-16

Terpenes can be used as renewable fuels and chemicals and quantifying their presence in biomass is becoming increasingly important. A novel method was developed to rapidly quantify total diterpenoid resin acids using pyrolysis-molecular beam mass spectrometry (py-MBMS). Pine sapling monoterpenes and diterpenoids were extracted from wood using a 1:1 (v/v) mixture of hexane and acetone and analyses were performed before and after extraction to determine the extraction efficiency of the solvent system. The resulting extract was analyzed for total diterpenoid content using py-MBMS and was combined with total monoterpene content that was determined using a low thermal mass modular acceleratedmore » column heater (LTM MACH) fast-GC/FID to measure the terpene content present in pine saplings. Oleoresin extruded from larger pine trees was used to validate mass balance closure of the terpene content in the extract solvent.« less

Inertial Mass

ERIC Educational Resources Information Center

King, Kenneth P.

2007-01-01

The inertial balance is one device that can help students to quantify the quality of inertia--a body's resistance to a change in movement--in more generally understood terms of mass. In this hands-on activity, students use the inertial balance to develop a more quantitative idea of what mass means in an inertial sense. The activity also helps…

Age, state, environment, and season dependence of senescence in body mass.

PubMed

Kroeger, Svenja B; Blumstein, Daniel T; Armitage, Kenneth B; Reid, Jane M; Martin, Julien G A

2018-02-01

Senescence is a highly variable process that comprises both age-dependent and state-dependent components and can be greatly affected by environmental conditions. However, few studies have quantified the magnitude of age-dependent and state-dependent senescence in key life-history traits across individuals inhabiting different spatially structured and seasonal environments. We used longitudinal data from wild female yellow-bellied marmots ( Marmota flaviventer ), living in two adjacent environments that differ in elevation and associated phenology, to quantify how age and individual state, measured as "time to death," affect body mass senescence in different environments. Further, we quantified how patterns of senescence differed between two biologically distinct seasons, spring, and late summer. Body mass senescence had an age-dependent component, expressed as a decrease in mass in old age. Overall, estimated age-dependent senescence was greater in females living in the more favorable lower elevation environment, than in the harsher higher elevation environment, and greater in late summer than in spring. Body mass senescence also had a state-dependent component, captured by effects of time to death, but only in the more favorable lower elevation environment. In spring, body mass gradually decreased from 2 years before death, whereas in late summer, state-dependent effects were expressed as a terminal decrease in body mass in the last year of life. Contrary to expectations, we found that senescence was more likely to be observed under more favorable environmental conditions, rather than under harsher conditions. By further demonstrating that senescence patterns differ among seasons, our results imply that within-year temporal environmental variation must be considered alongside spatial environmental variation in order to characterize and understand the pattern and magnitude of senescence in wild populations.

Influence of summer sowing dates, N fertilization and irrigation on autumn VSP accumulation and dynamics of spring regrowth in alfalfa (Medicago sativa L.).

PubMed

Justes, Eric; Thiébeau, Pascal; Avice, Jean-Christophe; Lemaire, Gilles; Volenec, Jeffrey J; Ourry, Alain

2002-01-01

Herbage yield of alfalfa (Medicago sativa L.) depends on forage management or environmental conditions that change C and N resource acquisition, and endogenous plants factors such as root organic reserves and number of active meristems. The aim of this work is to study the influence of two sowing dates in summer (12 July or 9 August), N fertilization (0 or 100 kg ha(-1)) and/or irrigation applied during the first year of alfalfa establishment on (i) the accumulation of N organic reserves (soluble proteins and more specifically vegetative storage protein) in taproots during autumn, (ii) the number of crown axillary meristems present at the end of winter and (iii) the dynamics of spring shoot growth. Delaying the sowing date for one month reduced root growth and root N storage, especially vegetative storage proteins (VSP) during autumn. Irrespective of sowing dates, N fertilization did not affect root biomass, number of crown buds, total root N, root soluble protein or VSP concentrations. By contrast, water deficiency during alfalfa establishment in the early summer reduced both root growth and N reserve accumulation. When spring growth resumed, there is a significant linear relationship between leaf area development and soluble protein and VSP concentrations in taproots, and also the number of crown buds. The results showed that an early sowing date and adequate water status during the summer allowed alfalfa plants to accumulate N reserves by increasing taproot mass and soluble protein concentrations, especially VSPs. This resulted in rapid shoot regrowth rates the following spring.

Novel strategy for the determination of illegal adulterants in health foods and herbal medicines using high-performance liquid chromatography with high-resolution mass spectrometry.

PubMed

Wang, Zhe; Wu, Caisheng; Wang, Gangli; Zhang, Qingsheng; Zhang, Jinlan

2015-03-01

The detection, confirmation, and quantification of multiple illegal adulterants in health foods and herbal medicines by using a single analytical method are a challenge. This paper reports on a new strategy to meet this challenge by employing high-performance liquid chromatography coupled with high-resolution mass spectrometry and a mass spectral tree similarity filter technique. This analytical method can rapidly collect high-resolution, high-accuracy, optionally multistage mass data for compounds in samples. After a preliminary screening by retention time and high-resolution mass spectral data, known illegal adulterants can be detected. The mass spectral tree similarity filter technique has been applied to rapidly confirm these adulterants and simultaneously discover unknown ones. By using full-scan mass spectra as stem and data-dependent subsequent stage mass spectra to form branches, mass spectrometry data from detected compounds are converted into mass spectral trees. The known or unknown illegal adulterants in the samples are confirmed or discovered based on the similarity between their mass spectral trees and those of the references in a library, and they are finally quantified against standard curves. This new strategy has been tested by using 50 samples, and the illegal adulterants were rapidly and effectively detected, confirmed and quantified. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Quantification of neutral human milk oligosaccharides by graphitic carbon HPLC with tandem mass spectrometry

PubMed Central

Bao, Yuanwu; Chen, Ceng; Newburg, David S.

2012-01-01

Defining the biologic roles of human milk oligosaccharides (HMOS) requires an efficient, simple, reliable, and robust analytical method for simultaneous quantification of oligosaccharide profiles from multiple samples. The HMOS fraction of milk is a complex mixture of polar, highly branched, isomeric structures that contain no intrinsic facile chromophore, making their resolution and quantification challenging. A liquid chromatography-mass spectrometry (LC-MS) method was devised to resolve and quantify 11 major neutral oligosaccharides of human milk simultaneously. Crude HMOS fractions are reduced, resolved by porous graphitic carbon HPLC with a water/acetonitrile gradient, detected by mass spectrometric specific ion monitoring, and quantified. The HPLC separates isomers of identical molecular weights allowing 11 peaks to be fully resolved and quantified by monitoring mass to charge (m/z) ratios of the deprotonated negative ions. The standard curves for each of the 11 oligosaccharides is linear from 0.078 or 0.156 to 20 μg/mL (R2 > 0.998). Precision (CV) ranges from 1% to 9%. Accuracy is from 86% to 104%. This analytical technique provides sensitive, precise, accurate quantification for each of the 11 milk oligosaccharides and allows measurement of differences in milk oligosaccharide patterns between individuals and at different stages of lactation. PMID:23068043

Quantification of correlational selection on thermal physiology, thermoregulatory behavior, and energy metabolism in lizards

PubMed Central

Artacho, Paulina; Saravia, Julia; Ferrandière, Beatriz Decencière; Perret, Samuel; Le Galliard, Jean-François

2015-01-01

Phenotypic selection is widely accepted as the primary cause of adaptive evolution in natural populations, but selection on complex functional properties linking physiology, behavior, and morphology has been rarely quantified. In ectotherms, correlational selection on thermal physiology, thermoregulatory behavior, and energy metabolism is of special interest because of their potential coadaptation. We quantified phenotypic selection on thermal sensitivity of locomotor performance (sprint speed), thermal preferences, and resting metabolic rate in captive populations of an ectothermic vertebrate, the common lizard, Zootoca vivipara. No correlational selection between thermal sensitivity of performance, thermoregulatory behavior, and energy metabolism was found. A combination of high body mass and resting metabolic rate was positively correlated with survival and negatively correlated with fecundity. Thus, different mechanisms underlie selection on metabolism in lizards with small body mass than in lizards with high body mass. In addition, lizards that selected the near average preferred body temperature grew faster that their congeners. This is one of the few studies that quantifies significant correlational selection on a proxy of energy expenditure and stabilizing selection on thermoregulatory behavior. PMID:26380689

Quantification of correlational selection on thermal physiology, thermoregulatory behavior, and energy metabolism in lizards.

PubMed

Artacho, Paulina; Saravia, Julia; Ferrandière, Beatriz Decencière; Perret, Samuel; Le Galliard, Jean-François

2015-09-01

Phenotypic selection is widely accepted as the primary cause of adaptive evolution in natural populations, but selection on complex functional properties linking physiology, behavior, and morphology has been rarely quantified. In ectotherms, correlational selection on thermal physiology, thermoregulatory behavior, and energy metabolism is of special interest because of their potential coadaptation. We quantified phenotypic selection on thermal sensitivity of locomotor performance (sprint speed), thermal preferences, and resting metabolic rate in captive populations of an ectothermic vertebrate, the common lizard, Zootoca vivipara. No correlational selection between thermal sensitivity of performance, thermoregulatory behavior, and energy metabolism was found. A combination of high body mass and resting metabolic rate was positively correlated with survival and negatively correlated with fecundity. Thus, different mechanisms underlie selection on metabolism in lizards with small body mass than in lizards with high body mass. In addition, lizards that selected the near average preferred body temperature grew faster that their congeners. This is one of the few studies that quantifies significant correlational selection on a proxy of energy expenditure and stabilizing selection on thermoregulatory behavior.

Propellant combustion product analyses on an M16 rifle and a 105 mm caliber gun

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ase, P.; Eisenberg, W.; Gordon, S.

1985-01-01

Some of the propellant combustion products (particulates and gases) that are formed on firing an M16 rifle and 105 mm caliber gun have been subjected to qualitative, and to a more limited extent, quantitative chemical analyses. For both weapons, large numbers of trace gas species, 90 to 70 respectively, were identified in the combustion effluents from the small large bore weapons. Quantifiable data were obtained for 15 of these species in terms of mass of compound formed per unit mass of propellant burned. Polynuclear aromatic hydrocarbons, 11 and 4 respectively, were identified and quantified in the combustion products from themore » small and large bore weapons. Metal particulates in the respirable range in the combustion products from the M16 rifle were analyzed and quantified. Many of the chemical species identified in the study have known toxicological properties. Although the data base is limited, it appears that within the confines of the different propellants' stoichiometries, the amounts of combustion products formed are approximately directly proportional to the masses of propellant burned.« less

A mass-balance model to separate and quantify colloidal and solute redistributions in soil

USGS Publications Warehouse

Bern, C.R.; Chadwick, O.A.; Hartshorn, A.S.; Khomo, L.M.; Chorover, J.

2011-01-01

Studies of weathering and pedogenesis have long used calculations based upon low solubility index elements to determine mass gains and losses in open systems. One of the questions currently unanswered in these settings is the degree to which mass is transferred in solution (solutes) versus suspension (colloids). Here we show that differential mobility of the low solubility, high field strength (HFS) elements Ti and Zr can trace colloidal redistribution, and we present a model for distinguishing between mass transfer in suspension and solution. The model is tested on a well-differentiated granitic catena located in Kruger National Park, South Africa. Ti and Zr ratios from parent material, soil and colloidal material are substituted into a mixing equation to quantify colloidal movement. The results show zones of both colloid removal and augmentation along the catena. Colloidal losses of 110kgm-2 (-5% relative to parent material) are calculated for one eluviated soil profile. A downslope illuviated profile has gained 169kgm-2 (10%) colloidal material. Elemental losses by mobilization in true solution are ubiquitous across the catena, even in zones of colloidal accumulation, and range from 1418kgm-2 (-46%) for an eluviated profile to 195kgm-2 (-23%) at the bottom of the catena. Quantification of simultaneous mass transfers in solution and suspension provide greater specificity on processes within soils and across hillslopes. Additionally, because colloids include both HFS and other elements, the ability to quantify their redistribution has implications for standard calculations of soil mass balances using such index elements. ?? 2011.

UNCERTAINTIES IN NITROGEN MASS LOADINGS IN COASTAL WATERSHEDS

EPA Science Inventory

With the increasing reduction of nutrients for coastal eutrophication control, the importance of well defined nitrogen mass balance becomes paramount. imited number of attempts have been made to quantify inputs and outputs within major coastal ecosystems including its watersheds....

Effects of sequential treatments with eprinomectin on performance and grazing behaviour in dairy cattle under daily-paddock stocking management.

PubMed

Gibb, M J; Huckle, C A; Forbes, A B

2005-10-10

To evaluate the effect of gastrointestinal parasites on grazing behaviour, herbage intake and milk production in spring calving dairy cows, 12 naturally infected control cows were compared with 12 similar animals treated on three occasions (June, July and September) with eprinomectin. The cows were blocked according to calving date, parity, live weight and milk yield during week 2 after turnout and then allocated to the treatments. The grazing area was sub-divided into two sets of 12 replicated paddocks of equivalent size and topography. Pairs of either control or treated animals were randomly assigned to graze each paddock over the duration of the study. Within each plot, the pair of cows grazed a series of 1-day paddocks, of areas calculated to provide 72 kg of herbage dry matter measured to ground level. Faecal samples were collected from each cow in April, prior to allocation, and every 28 days thereafter. Samples were submitted for counts of nematode eggs (sensitivity 1 epg) and the presence of Dictyocaulus viviparus larvae. Additional faecal samples were taken on each occasion for culture and nematode identification. Pasture samples for direct larval counts were collected at the same time as faecal sampling. Behaviour measurements on all cows were made during three periods, once before the first treatment with eprinomectin and thence after the 2nd and 3rd treatments. During each behaviour measurement period, grazing and ruminating behaviour were recorded over two 24-h periods and measurements of components of short-term intake rate were made during a morning and a late afternoon grazing meal. Milk yield was recorded daily and milk quality was recorded weekly. Live weight and body condition score were recorded on the day of allocation, the day of initial treatment and thereafter at weekly intervals until the end of the trial. The parasitological results showed low levels of faecal egg output throughout the study with group arithmetic means ranging from 0 to 6.8 epg. Faecal culture yielded predominantly larvae of the genus Ostertagia, but the following genera were also identified: Cooperia, Oesophagostomum and Trichostrongylus. Pasture larval levels were also low with peak values of 135 and 58 L3/kg DM herbage (7 August) in the paddocks grazed by the control and treated cattle, respectively. Thereafter, larval counts on paddocks grazed by treated cows declined to undetectable levels by October, while control paddocks remained at approximately 40 L3/kg DM. There was no effect of treatment on components of grazing or ruminating behaviour recorded over 24 h or on short-term intake rates. There were significant differences between components of short-term intake rates measured during the morning and afternoon grazing meals. The overall milk yield response to treatment with eprinomectin was +1.68 kg/day solids-corrected milk (SCM) (P=0.026). The overall response included significant (P<0.050) increases in mean daily SCM yield following each of the three treatments, indicating a positive response to repeated treatments at several different stages of lactation. There were no significant differences in the overall percentages of fat, protein or lactose between control and treated groups. The differences in live weight were not significant, although there was a consistent pattern throughout for the treated cows to be heavier than the controls.

Update on Breast Cancer Detection Using Comb-push Ultrasound Shear Elastography

PubMed Central

Denis, Max; Bayat, Mahdi; Mehrmohammadi, Mohammad; Gregory, Adriana; Song, Pengfei; Whaley, Dana H.; Pruthi, Sandhya; Chen, Shigao; Fatemi, Mostafa; Alizad, Azra

2015-01-01

In this work, tissue stiffness estimates are used to differentiate between benign and malignant breast masses in a group of pre-biopsy patients. The rationale being that breast masses are often stiffer than healthy tissue; furthermore, malignant masses are stiffer than benign masses. The comb-push ultrasound shear elastography (CUSE) method is used to noninvasively assess a tissue’s mechanical properties. CUSE utilizes a simultaneous multiple laterally spaced radiation force (ARF) excitations and detection sequence to reconstruct the region of interest (ROI) shear wave speed map, from which a tissue stiffness property is quantified by Young’s modulus. In this study, the tissue stiffness of 73 breast masses is interrogated. The mean shear wave speeds for malignant masses (3.42 ± 1.32 m/s) were higher than benign breast masses (6.04 ± 1.25 m/s). These speed values correspond to higher stiffness in malignant breast masses (114.9 ± 40.6 kPa) than benign masses (39.4 ± 28.1 kPa and p < 0.001), when tissue elasticity is quantified by Young’s modulus. A Young’s modulus > 83 kPa is established as a cut-off value for differentiating between malignant and benign suspicious breast masses, with receiver operating characteristic curve (ROC) of 89.19% sensitivity, 88.69% specificity, and 0.911 for the area under the curve (AUC). PMID:26688871

Update on Breast Cancer Detection Using Comb-Push Ultrasound Shear Elastography.

PubMed

Denis, Max; Bayat, Mahdi; Mehrmohammadi, Mohammad; Gregory, Adriana; Song, Pengfei; Whaley, Dana H; Pruthi, Sandhya; Chen, Shigao; Fatemi, Mostafa; Alizad, Azra

2015-09-01

In this work, tissue stiffness estimates are used to differentiate between benign and malignant breast masses in a group of pre-biopsy patients. The rationale is that breast masses are often stiffer than healthy tissue; furthermore, malignant masses are stiffer than benign masses. The comb-push ultrasound shear elastography (CUSE) method is used to noninvasively assess a tissue's mechanical properties. CUSE utilizes a sequence of simultaneous multiple laterally spaced acoustic radiation force (ARF) excitations and detection to reconstruct the region of interest (ROI) shear wave speed map, from which a tissue stiffness property can be quantified. In this study, the tissue stiffnesses of 73 breast masses were interrogated. The mean shear wave speeds for benign masses (3.42 ± 1.32 m/s) were lower than malignant breast masses (6.04 ± 1.25 m/s). These speed values correspond to higher stiffness in malignant breast masses (114.9 ± 40.6 kPa) than benign masses (39.4 ± 28.1 kPa and p <; 0.001), when tissue elasticity is quantified by Young's modulus. A Young's modulus >83 kPa is established as a cut-off value for differentiating between malignant and benign suspicious breast masses, with a receiver operating characteristic curve (ROC) of 89.19% sensitivity, 88.69% specificity, and 0.911 for the area under the curve (AUC).

Quantifying Particle Numbers and Mass Flux in Drifting Snow

NASA Astrophysics Data System (ADS)

Crivelli, Philip; Paterna, Enrico; Horender, Stefan; Lehning, Michael

2016-12-01

We compare two of the most common methods of quantifying mass flux, particle numbers and particle-size distribution for drifting snow events, the snow-particle counter (SPC), a laser-diode-based particle detector, and particle tracking velocimetry based on digital shadowgraphic imaging. The two methods were correlated for mass flux and particle number flux. For the SPC measurements, the device was calibrated by the manufacturer beforehand. The shadowgrapic imaging method measures particle size and velocity directly from consecutive images, and before each new test the image pixel length is newly calibrated. A calibration study with artificially scattered sand particles and glass beads provides suitable settings for the shadowgraphical imaging as well as obtaining a first correlation of the two methods in a controlled environment. In addition, using snow collected in trays during snowfall, several experiments were performed to observe drifting snow events in a cold wind tunnel. The results demonstrate a high correlation between the mass flux obtained for the calibration studies (r ≥slant 0.93) and good correlation for the drifting snow experiments (r ≥slant 0.81). The impact of measurement settings is discussed in order to reliably quantify particle numbers and mass flux in drifting snow. The study was designed and performed to optimize the settings of the digital shadowgraphic imaging system for both the acquisition and the processing of particles in a drifting snow event. Our results suggest that these optimal settings can be transferred to different imaging set-ups to investigate sediment transport processes.

The limited role of galaxy mergers in driving stellar mass growth over cosmic time

NASA Astrophysics Data System (ADS)

Martin, G.; Kaviraj, S.; Devriendt, J. E. G.; Dubois, Y.; Laigle, C.; Pichon, C.

2017-11-01

A key unresolved question is the role that galaxy mergers play in driving stellar mass growth over cosmic time. Recent observational work hints at the possibility that the overall contribution of 'major' mergers (mass ratios ≳ 1 : 4) to cosmic stellar mass growth may be small, because they enhance star formation rates by relatively small amounts at high redshift, when much of today's stellar mass was assembled. However, the heterogeneity and relatively small size of today's data sets, coupled with the difficulty in identifying genuine mergers, makes it challenging to empirically quantify the merger contribution to stellar mass growth. Here, we use Horizon-AGN, a cosmological hydrodynamical simulation, to comprehensively quantify the contribution of mergers to the star formation budget over the lifetime of the Universe. We show that (1) both major and minor mergers enhance star formation to similar amounts, (2) the fraction of star formation directly attributable to merging is small at all redshifts (e.g. ∼35 and ∼20 per cent at z ∼ 3 and z ∼ 1, respectively) and (3) only ∼25 per cent of today's stellar mass is directly attributable to galaxy mergers over cosmic time. Our results suggest that smooth accretion, not merging, is the dominant driver of stellar mass growth over the lifetime of the Universe.

Quantifying in-stream nitrate reaction rates using continuously-collected water quality data

Treesearch

Matthew Miller; Anthony Tesoriero; Paul Capel

2016-01-01

High frequency in situ nitrate data from three streams of varying hydrologic condition, land use, and watershed size were used to quantify the mass loading of nitrate to streams from two sources – groundwater discharge and event flow – at a daily time step for one year. These estimated loadings were used to quantify temporally-variable in-stream nitrate processing ...

PyQuant: A Versatile Framework for Analysis of Quantitative Mass Spectrometry Data.

PubMed

Mitchell, Christopher J; Kim, Min-Sik; Na, Chan Hyun; Pandey, Akhilesh

2016-08-01

Quantitative mass spectrometry data necessitates an analytical pipeline that captures the accuracy and comprehensiveness of the experiments. Currently, data analysis is often coupled to specific software packages, which restricts the analysis to a given workflow and precludes a more thorough characterization of the data by other complementary tools. To address this, we have developed PyQuant, a cross-platform mass spectrometry data quantification application that is compatible with existing frameworks and can be used as a stand-alone quantification tool. PyQuant supports most types of quantitative mass spectrometry data including SILAC, NeuCode, (15)N, (13)C, or (18)O and chemical methods such as iTRAQ or TMT and provides the option of adding custom labeling strategies. In addition, PyQuant can perform specialized analyses such as quantifying isotopically labeled samples where the label has been metabolized into other amino acids and targeted quantification of selected ions independent of spectral assignment. PyQuant is capable of quantifying search results from popular proteomic frameworks such as MaxQuant, Proteome Discoverer, and the Trans-Proteomic Pipeline in addition to several standalone search engines. We have found that PyQuant routinely quantifies a greater proportion of spectral assignments, with increases ranging from 25-45% in this study. Finally, PyQuant is capable of complementing spectral assignments between replicates to quantify ions missed because of lack of MS/MS fragmentation or that were omitted because of issues such as spectra quality or false discovery rates. This results in an increase of biologically useful data available for interpretation. In summary, PyQuant is a flexible mass spectrometry data quantification platform that is capable of interfacing with a variety of existing formats and is highly customizable, which permits easy configuration for custom analysis. © 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Assessment of uncertainties of an aircraft-based mass balance approach for quantifying urban greenhouse gas emissions

NASA Astrophysics Data System (ADS)

Cambaliza, M. O. L.; Shepson, P. B.; Caulton, D. R.; Stirm, B.; Samarov, D.; Gurney, K. R.; Turnbull, J.; Davis, K. J.; Possolo, A.; Karion, A.; Sweeney, C.; Moser, B.; Hendricks, A.; Lauvaux, T.; Mays, K.; Whetstone, J.; Huang, J.; Razlivanov, I.; Miles, N. L.; Richardson, S. J.

2014-09-01

Urban environments are the primary contributors to global anthropogenic carbon emissions. Because much of the growth in CO2 emissions will originate from cities, there is a need to develop, assess, and improve measurement and modeling strategies for quantifying and monitoring greenhouse gas emissions from large urban centers. In this study the uncertainties in an aircraft-based mass balance approach for quantifying carbon dioxide and methane emissions from an urban environment, focusing on Indianapolis, IN, USA, are described. The relatively level terrain of Indianapolis facilitated the application of mean wind fields in the mass balance approach. We investigate the uncertainties in our aircraft-based mass balance approach by (1) assessing the sensitivity of the measured flux to important measurement and analysis parameters including wind speed, background CO2 and CH4, boundary layer depth, and interpolation technique, and (2) determining the flux at two or more downwind distances from a point or area source (with relatively large source strengths such as solid waste facilities and a power generating station) in rapid succession, assuming that the emission flux is constant. When we quantify the precision in the approach by comparing the estimated emissions derived from measurements at two or more downwind distances from an area or point source, we find that the minimum and maximum repeatability were 12 and 52%, with an average of 31%. We suggest that improvements in the experimental design can be achieved by careful determination of the background concentration, monitoring the evolution of the boundary layer through the measurement period, and increasing the number of downwind horizontal transect measurements at multiple altitudes within the boundary layer.

Use of Computed Tomography Imaging for Qualifying Coarse Roots, Rhizomes, Peat, and Particle Densities in Marsh Soils

EPA Science Inventory

Computed tomography (CT) imaging has been used to describe and quantify subtidal, benthic animals such as polychaetes, amphipods, and shrimp. Here, for the first time, CT imaging is used to successfully quantify wet mass of coarse roots, rhizomes, and peat in cores collected from...

Use of Computer-Aided Tomography (CT) Imaging for Quantifying Coarse Roots, Rhizomes, Peat, and Particle Densities in Marsh Soils

EPA Science Inventory

Computer-aided Tomography (CT) imaging was utilized to quantify wet mass of coarse roots, rhizomes, and peat in cores collected from organic-rich (Jamaica Bay, NY) and mineral (North Inlet, SC) Spartina alterniflora soils. Calibration rods composed of materials with standard dens...

Derivation of a first order approximation of particulate matter from aircraft

DOT National Transportation Integrated Search

2003-06-22

The mass of particulate matter (PM) emitted from aircraft must be predicted for major : actions at airports to comply with current federal regulations. However, this PM mass in : the jet exhaust has not been effectively quantified to permit accurate ...

Bedding additives reduce ammonia emission and improve crop N uptake after soil application of solid cattle manure.

PubMed

Shah, Ghulam Abbas; Shah, Ghulam Mustafa; Rashid, Muhammad Imtiaz; Groot, Jeroen C J; Traore, Bouba; Lantinga, Egbert A

2018-03-01

This study examined the influences of three potential additives, i.e., lava meal, sandy soil top-layer and zeolite (used in animal bedding) amended solid cattle manures on (i) ammonia (NH 3 ), dinitrous oxide (N 2 O), carbon dioxide (CO 2 ) and methane (CH 4 ) emissions and (ii) maize crop or grassland apparent N recovery (ANR). Diffusion samplers were installed at 20 cm height on grassland surface to measure the concentrations of NH 3 from the manures. A photoacoustic gas monitor was used to quantitate the fluxes of N 2 O, CH 4 and CO 2 after manures' incorporation into the maize-field. Herbage ANR was calculated from dry matter yield and N uptake of three successive harvests, while maize crop ANR was determined at cusp of juvenile stage, outset of grain filling as well as physiological maturity stages. Use of additives decreased the NH 3 emission rates by about two-third from the manures applied on grassland surface than control untreated-manure. Total herbage ANR was more than doubled in treated manures and was 25% from manure amended with farm soil, 26% and 28% from zeolite and lava meal, respectively compared to 11% from control manure. In maize experiment, mean N 2 O and CO 2 emission rates were the highest from the latter treatment but these rates were not differed from zero control in case of manures amended with farm soil or zeolite. However, mean CH 4 emissions was not differed among all treatments during the whole measuring period. The highest maize crop ANR was obtained at the beginning of grain filling stage (11-40%), however ample lower crop recoveries (8-14%) were achieved at the final physiological maturity stage. This phenomenon was occurred due to leaf senescence N losses from maize crop during the period of grains filling. The lowest losses were observed from control manure at this stage. Hence, all additives decreased the N losses from animal manure and enhanced crop N uptake thus improved the agro-environmental worth of animal manure. Copyright © 2017 Elsevier Ltd. All rights reserved.

Ergot alkaloid intoxication in perennial ryegrass (Lolium perenne): an emerging animal health concern in Ireland?

PubMed

Canty, Mary J; Fogarty, Ursula; Sheridan, Michael K; Ensley, Steve M; Schrunk, Dwayne E; More, Simon J

2014-01-01

Four primary mycotoxicosis have been reported in livestock caused by fungal infections of grasses or cereals by members of the Clavicipitaceae family. Ergotism (generally associated with grasses, rye, triticale and other grains) and fescue toxicosis (associated with tall fescue grass, Festuca arundinacea) are both caused by ergot alkaloids, and referred to as 'ergot alkaloid intoxication'. Ryegrass staggers (associated with perennial ryegrass Lolium perenne) is due to intoxication with an indole-diperpene, Lolitrem B, and metabolites. Fescue-associated oedema, recently described in Australia, may be associated with a pyrrolizidine alkaloid, N-acetyl norloline. Ergotism, caused by the fungus Claviceps purpurea, is visible and infects the outside of the plant seed. Fescue toxicosis and ryegrass staggers are caused by Neotyphodium coenophalium and N. lolii, respectively. Fescue-associated oedema has been associated with tall fescue varieties infected with a specific strain of N. coenophialum (AR542, Max P or Max Q). The name Neotyphodium refers to asexual derivatives of Epichloë spp., which have collectively been termed the epichloë fungi. These fungi exist symbiotically within the grass and are invisible to the naked eye. The primary toxicological effect of ergot alkaloid involves vasoconstriction and/or hypoprolactinaemia. Ingestion of ergot alkaloid by livestock can cause a range of effects, including poor weight gain, reduced fertility, hyperthermia, convulsions, gangrene of the extremities, and death. To date there are no published reports, either internationally or nationally, reporting ergot alkaloid intoxication specifically associated with perennial ryegrass endophytes. However, unpublished reports from the Irish Equine Centre have identified a potential emerging problem of ergot alkaloid intoxication with respect to equines and bovines, on primarily perennial ryegrass-based diets. Ergovaline has been isolated in varying concentrations in the herbage of a small number of equine and bovine farms where poor animal health and performance had been reported. Additionally, in some circumstances changes to the diet, where animals were fed primarily herbage, were sufficient to reverse adverse effects. Pending additional information, these results suggest that Irish farm advisors and veterinarians should be aware of the potential adverse role on animal health and performance of ergot alkaloids from perennial ryegrass infected with endophytic fungi.

Ergot alkaloid intoxication in perennial ryegrass (Lolium perenne): an emerging animal health concern in Ireland?

PubMed Central

2014-01-01

Four primary mycotoxicosis have been reported in livestock caused by fungal infections of grasses or cereals by members of the Clavicipitaceae family. Ergotism (generally associated with grasses, rye, triticale and other grains) and fescue toxicosis (associated with tall fescue grass, Festuca arundinacea) are both caused by ergot alkaloids, and referred to as ‘ergot alkaloid intoxication’. Ryegrass staggers (associated with perennial ryegrass Lolium perenne) is due to intoxication with an indole-diperpene, Lolitrem B, and metabolites. Fescue-associated oedema, recently described in Australia, may be associated with a pyrrolizidine alkaloid, N-acetyl norloline. Ergotism, caused by the fungus Claviceps purpurea, is visible and infects the outside of the plant seed. Fescue toxicosis and ryegrass staggers are caused by Neotyphodium coenophalium and N. lolii, respectively. Fescue-associated oedema has been associated with tall fescue varieties infected with a specific strain of N. coenophialum (AR542, Max P or Max Q). The name Neotyphodium refers to asexual derivatives of Epichloë spp., which have collectively been termed the epichloë fungi. These fungi exist symbiotically within the grass and are invisible to the naked eye. The primary toxicological effect of ergot alkaloid involves vasoconstriction and/or hypoprolactinaemia. Ingestion of ergot alkaloid by livestock can cause a range of effects, including poor weight gain, reduced fertility, hyperthermia, convulsions, gangrene of the extremities, and death. To date there are no published reports, either internationally or nationally, reporting ergot alkaloid intoxication specifically associated with perennial ryegrass endophytes. However, unpublished reports from the Irish Equine Centre have identified a potential emerging problem of ergot alkaloid intoxication with respect to equines and bovines, on primarily perennial ryegrass-based diets. Ergovaline has been isolated in varying concentrations in the herbage of a small number of equine and bovine farms where poor animal health and performance had been reported. Additionally, in some circumstances changes to the diet, where animals were fed primarily herbage, were sufficient to reverse adverse effects. Pending additional information, these results suggest that Irish farm advisors and veterinarians should be aware of the potential adverse role on animal health and performance of ergot alkaloids from perennial ryegrass infected with endophytic fungi. PMID:25295161

Quantification of the Mass Transfer at Fluid Interfaces in Microfluidic Channels

NASA Astrophysics Data System (ADS)

Wismeth, Carina; Manhart, Michael; Niessner, Reinhard; Baumann, Thomas

2017-04-01

Mass transfer rates at interfaces in a complex porous media are relevant in many environmental applications and control the functions of natural filter systems in subsurface environments. The mass transfer at fluid interfaces is associated with interface convection caused by local inhomogeneities in interface tension and hydrodynamic instabilities at the interface. If there is a surface tension gradient along the surface a shear stress jump is generated that results in fluid motion along the surface that is called Marangoni effect. These spontaneous convection currents can lead to an increased mass transfer of the transition component at the phase boundary and to an increased mixing of the phases. Therefore compensatory currents at the interface can have a significant influence on the subsurface transport of contaminants in the groundwater area, especially in the vadose zone. Using microfluidic channels and advanced experimental techniques it is possible to measure the fluid flow and mass transfer rates directly and to quantify the effect of the Marangoni convection on the mass transfer at interfaces between a non-aqueous liquid and water with high temporal and spatial resolution. The use of fluorescent particles as well as the recording and analysis of their trajectories is intended to visualize interfacial processes and to quantify the mass transfer at fluid phase boundaries. Concentration gradients at the interface are analysed by spectroscopic methods and allow an assessment of the enrichment and depletion at the phase boundaries. Extensive test series provide the experimental basis for quantifying and analysing the impact of the Marangoni effect on the mass transfer rates at interfaces in porous media in subsurface aquatic environments. Within this research project we concentrate on the effect of Marangoni convection on the mass transfer near an 1-octanol-water interface, which serves as a well defined proxy for non-aqueous phase liquids in porous media. Experiments and a numerical simulation are closely coupled to provide a generic data set with high reproducibility and used to obtain highly resolved three-dimensional data of mass transfer in two- and three-phase systems to foster the understanding of subsurface transport, especially in the vadose zone.

Predicting coral bleaching in response to environmental stressors using 8 years of global-scale data.

PubMed

Yee, Susan Harrell; Barron, Mace G

2010-02-01

Coral reefs have experienced extensive mortality over the past few decades as a result of temperature-induced mass bleaching events. There is an increasing realization that other environmental factors, including water mixing, solar radiation, water depth, and water clarity, interact with temperature to either exacerbate bleaching or protect coral from mass bleaching. The relative contribution of these factors to variability in mass bleaching at a global scale has not been quantified, but can provide insights when making large-scale predictions of mass bleaching events. Using data from 708 bleaching surveys across the globe, a framework was developed to predict the probability of moderate or severe bleaching as a function of key environmental variables derived from global-scale remote-sensing data. The ability of models to explain spatial and temporal variability in mass bleaching events was quantified. Results indicated approximately 20% improved accuracy of predictions of bleaching when solar radiation and water mixing, in addition to elevated temperature, were incorporated into models, but predictive accuracy was variable among regions. Results provide insights into the effects of environmental parameters on bleaching at a global scale.

Mass reduction patterning of silicon-on-oxide-based micromirrors

NASA Astrophysics Data System (ADS)

Hall, Harris J.; Green, Andrew; Dooley, Sarah; Schmidt, Jason D.; Starman, LaVern A.; Langley, Derrick; Coutu, Ronald A.

2016-10-01

It has long been recognized in the design of micromirror-based optical systems that balancing static flatness of the mirror surface through structural design with the system's mechanical dynamic response is challenging. Although a variety of mass reduction approaches have been presented in the literature to address this performance trade, there has been little quantifiable comparison reported. In this work, different mass reduction approaches, some unique to the work, are quantifiably compared with solid plate thinning in both curvature and mass using commercial finite element simulation of a specific square silicon-on-insulator-based micromirror geometry. Other important considerations for micromirror surfaces, including surface profile and smoothness, are also discussed. Fabrication of one of these geometries, a two-dimensional tessellated square pattern, was performed in the presence of a 400-μm-tall central post structure using a simple single mask process. Limited experimental curvature measurements of fabricated samples are shown to correspond well with properly characterized simulation results and indicate ˜67% improvement in radius of curvature in comparison to a solid plate design of equivalent mass.

Quantifying the Role of Atmospheric Forcing in Ice Edge Retreat and Advance Including Wind-Wave Coupling

DTIC Science & Technology

2015-09-30

Quantifying the Role of Atmospheric Forcing in Ice Edge Retreat and Advance Including Wind- Wave Coupling Peter S. Guest (NPS Technical Contact) Naval...surface fluxes and ocean waves in coupled models in the Beaufort and Chukchi Seas. 2. Understand the physics of heat and mass transfer from the ocean...to the atmosphere. 3. Improve forecasting of waves on the open ocean and in the marginal ice zone. 2 OBJECTIVES 1. Quantifying the open-ocean

THE MASS ACCOMMODATION COEFFICIENT OF AMMONIUM NITRATE AEROSOL. (R823514)

EPA Science Inventory

The mass transfer rate of pure ammonium nitrate between the aerosol and gas phases was
quantified experimentally by the use of the tandem differential mobility analyzer/scanning mobility
particle sizer (TDMA/SMPS) technique. Ammonium nitrate particles 80-220 nm in diameter<...

Capillary liquid chromatography-mass spectrometry for the rapid identification and quantification of almond flavonoids.

PubMed

Hughey, Christine A; Wilcox, Bruce; Minardi, Carina S; Takehara, Chiyo W; Sundararaman, Meenakshi; Were, Lilian M

2008-05-30

A rapid negative ion ESI high-performance capillary liquid chromatography-mass spectrometry method was developed to identify and quantify flavonoids (e.g., flavanols, flavonols, flavanones and glycosides). Fifteen standards and two varieties of almond skin extract powder (Carmel and Nonpareil) were used to demonstrate the chromatographic separation, reproducibility and accuracy of the method that employed a 150 mm x 0.3 mm ChromXP 3C18-EP-120 column. All standards eluted in less than 10 min, providing a 9-12x reduction in analysis time compared to existing methods (90-120 min). However, isomers (e.g., catechin/epicatechin and galactosides/glucosides) were not resolved and, therefore, identified and quantified collectively. RSDs for retention time and peak area reproducibility (mass spectrometry data) were <0.5% and <5.0%, respectively. Peak area reproducibility was greatly improved (from a RSD>10%) after the implementation of a low-flow metal needle in the ESI source. Quantitation by mass spectrometry also afforded a % error less than 5% for most compounds.

Measurement of emissions of fine particulate organic matter from Chinese cooking

NASA Astrophysics Data System (ADS)

He, Ling-Yan; Hu, Min; Huang, Xiao-Feng; Yu, Ben-De; Zhang, Yuan-Hang; Liu, De-Quan

Cooking emissions may contribute significantly to atmospheric organic particles in urban environment in China, and thus need to be examined first for its chemical compositions and characteristics. The particulate organic emissions of the two cooking styles of Chinese cuisine, that is, Hunan Cooking and Cantonese Cooking, were characterized in Shenzhen. More than half of the PM 2.5 mass is due to organic compounds, and over 90 species of organic compounds were identified and quantified, accounting for 26.1% of bulk organic particle mass and 20.7% of PM 2.5. Fatty acids, diacids and steroids were the major organic compounds emitted from both styles of cooking. Of the quantified organic mass, over 90% was fatty acids. The mass of organic species, and the molecular distribution of n-alkanes and PAHs indicated the dissimilarities between the two different cooking styles, but generally the major parts of the organic particulate emissions of the two restaurants were similar, showing less difference than between Chinese and American cooking.

Investigation of plastic debris ingestion by four species of sea turtles collected as bycatch in pelagic Pacific longline fisheries

USGS Publications Warehouse

Clukey, Katherine E.; Lepczyk, Christopher A.; Balazs, George H.; Work, Thierry M.; Lynch, Jennifer M.

2017-01-01

Ingestion of marine debris is an established threat to sea turtles. The amount, type, color and location of ingested plastics in the gastrointestinal tracts of 55 sea turtles from Pacific longline fisheries from 2012 to 2016 were quantified, and compared across species, turtle length, body condition, sex, capture location, season and year. Six approaches for quantifying amounts of ingested plastic strongly correlated with one another and included: number of pieces, mass, volume and surface area of plastics, ratio of plastic mass to body mass, and percentage of the mass of gut contents consisting of plastic. All olive ridley (n = 37), 90% of green (n = 10), 80% of loggerhead (n = 5) and 0% of leatherback (n = 3) turtles had ingested plastic; green turtles ingested significantly more than olive ridleys. Most debris was in the large intestines. No adverse health impacts (intestinal lesions, blockage, or poor body condition) due directly to plastic ingestion were noted.

Automated Validation of Results and Removal of Fragment Ion Interferences in Targeted Analysis of Data-independent Acquisition Mass Spectrometry (MS) using SWATHProphet*

PubMed Central

Keller, Andrew; Bader, Samuel L.; Shteynberg, David; Hood, Leroy; Moritz, Robert L.

2015-01-01

Proteomics by mass spectrometry technology is widely used for identifying and quantifying peptides and proteins. The breadth and sensitivity of peptide detection have been advanced by the advent of data-independent acquisition mass spectrometry. Analysis of such data, however, is challenging due to the complexity of fragment ion spectra that have contributions from multiple co-eluting precursor ions. We present SWATHProphet software that identifies and quantifies peptide fragment ion traces in data-independent acquisition data, provides accurate probabilities to ensure results are correct, and automatically detects and removes contributions to quantitation originating from interfering precursor ions. Integration in the widely used open source Trans-Proteomic Pipeline facilitates subsequent analyses such as combining results of multiple data sets together for improved discrimination using iProphet and inferring sample proteins using ProteinProphet. This novel development should greatly help make data-independent acquisition mass spectrometry accessible to large numbers of users. PMID:25713123

Investigation of plastic debris ingestion by four species of sea turtles collected as bycatch in pelagic Pacific longline fisheries.

PubMed

Clukey, Katharine E; Lepczyk, Christopher A; Balazs, George H; Work, Thierry M; Lynch, Jennifer M

2017-07-15

Ingestion of marine debris is an established threat to sea turtles. The amount, type, color and location of ingested plastics in the gastrointestinal tracts of 55 sea turtles from Pacific longline fisheries from 2012 to 2016 were quantified, and compared across species, turtle length, body condition, sex, capture location, season and year. Six approaches for quantifying amounts of ingested plastic strongly correlated with one another and included: number of pieces, mass, volume and surface area of plastics, ratio of plastic mass to body mass, and percentage of the mass of gut contents consisting of plastic. All olive ridley (n=37), 90% of green (n=10), 80% of loggerhead (n=5) and 0% of leatherback (n=3) turtles had ingested plastic; green turtles ingested significantly more than olive ridleys. Most debris was in the large intestines. No adverse health impacts (intestinal lesions, blockage, or poor body condition) due directly to plastic ingestion were noted. Copyright © 2017. Published by Elsevier Ltd.

EpiProfile Quantifies Histone Peptides With Modifications by Extracting Retention Time and Intensity in High-resolution Mass Spectra*

PubMed Central

Yuan, Zuo-Fei; Lin, Shu; Molden, Rosalynn C.; Cao, Xing-Jun; Bhanu, Natarajan V.; Wang, Xiaoshi; Sidoli, Simone; Liu, Shichong; Garcia, Benjamin A.

2015-01-01

Histone post-translational modifications contribute to chromatin function through their chemical properties which influence chromatin structure and their ability to recruit chromatin interacting proteins. Nanoflow liquid chromatography coupled with high resolution tandem mass spectrometry (nanoLC-MS/MS) has emerged as the most suitable technology for global histone modification analysis because of the high sensitivity and the high mass accuracy of this approach that provides confident identification. However, analysis of histones with this method is even more challenging because of the large number and variety of isobaric histone peptides and the high dynamic range of histone peptide abundances. Here, we introduce EpiProfile, a software tool that discriminates isobaric histone peptides using the distinguishing fragment ions in their tandem mass spectra and extracts the chromatographic area under the curve using previous knowledge about peptide retention time. The accuracy of EpiProfile was evaluated by analysis of mixtures containing different ratios of synthetic histone peptides. In addition to label-free quantification of histone peptides, EpiProfile is flexible and can quantify different types of isotopically labeled histone peptides. EpiProfile is unique in generating layouts (i.e. relative retention time) of histone peptides when compared with manual quantification of the data and other programs (such as Skyline), filling the need of an automatic and freely available tool to quantify labeled and non-labeled modified histone peptides. In summary, EpiProfile is a valuable nanoflow liquid chromatography coupled with high resolution tandem mass spectrometry-based quantification tool for histone peptides, which can also be adapted to analyze nonhistone protein samples. PMID:25805797

Spatial variation in soil properties and diffuse losses between and within grassland fields with similar short-term management.

PubMed

Peukert, S; Griffith, B A; Murray, P J; Macleod, C J A; Brazier, R E

2016-07-01

One of the major challenges for agriculture is to understand the effects of agricultural practices on soil properties and diffuse pollution, to support practical farm-scale land management. Three conventionally managed grassland fields with similar short-term management, but different ploughing histories, were studied on a long-term research platform: the North Wyke Farm Platform. The aims were to (i) quantify the between-field and within-field spatial variation in soil properties by geostatistical analysis, (ii) understand the effects of soil condition (in terms of nitrogen, phosphorus and carbon contents) on the quality of discharge water and (iii) establish robust baseline data before the implementation of various grassland management scenarios. Although the fields sampled had experienced the same land use and similar management for at least 6 years, there were differences in their mean soil properties. They showed different patterns of soil spatial variation and different rates of diffuse nutrient losses to water. The oldest permanent pasture field had the largest soil macronutrient concentrations and the greatest diffuse nutrient losses. We show that management histories affect soil properties and diffuse losses. Potential gains in herbage yield or benefits in water quality might be achieved by characterizing every field or by area-specific management within fields (a form of precision agriculture for grasslands). Permanent pasture per se cannot be considered a mitigation measure for diffuse pollution. The between- and within-field soil spatial variation emphasizes the importance of baseline characterization and will enable the reliable identification of any effects of future management change on the Farm Platform. Quantification of soil and water quality in grassland fields with contrasting management histories.Considerable spatial variation in soil properties and diffuse losses between and within fields.Contrasting management histories within and between fields strongly affected soil and water quality.Careful pasture management needed: the oldest pasture transferred the most nutrients from soil to water.

A Systematic Analysis of Caustic Methods for Galaxy Cluster Masses

NASA Astrophysics Data System (ADS)

Gifford, Daniel; Miller, Christopher; Kern, Nicholas

2013-08-01

We quantify the expected observed statistical and systematic uncertainties of the escape velocity as a measure of the gravitational potential and total mass of galaxy clusters. We focus our attention on low redshift (z <=0.15) clusters, where large and deep spectroscopic datasets currently exist. Utilizing a suite of Millennium Simulation semi-analytic galaxy catalogs, we find that the dynamical mass, as traced by either the virial relation or the escape velocity, is robust to variations in how dynamical friction is applied to "orphan" galaxies in the mock catalogs (i.e., those galaxies whose dark matter halos have fallen below the resolution limit). We find that the caustic technique recovers the known halo masses (M 200) with a third less scatter compared to the virial masses. The bias we measure increases quickly as the number of galaxies used decreases. For N gal > 25, the scatter in the escape velocity mass is dominated by projections along the line-of-sight. Algorithmic uncertainties from the determination of the projected escape velocity profile are negligible. We quantify how target selection based on magnitude, color, and projected radial separation can induce small additional biases into the escape velocity masses. Using N gal = 150 (25), the caustic technique has a per cluster scatter in ln (M|M 200) of 0.3 (0.5) and bias 1% ± 3} (16% ± 5}) for clusters with masses >1014 M ⊙ at z < 0.15.

Flavonoid content and antioxidant capacity of spinach genotypes determined by high-performance liquid chromatography/mass spectrometry

USDA-ARS?s Scientific Manuscript database

Flavonoids in different spinach genotypes were separated, identified, and quantified by a high-performance liquid chromatographic method with photodiode array and mass spectrometric detection. The antioxidant capacities of the genotypes were also measured using two antioxidant assays - oxygen radica...

Soil ingestion by dairy cattle

DOE Office of Scientific and Technical Information (OSTI.GOV)

Darwin, R.

1990-02-15

Ingested soil may be a source of minerals to grazing cattle; it may also be a source of radionuclides, heavy metals, and organic toxins. The importance of soil ingestion in the milk pathway depends on the amount of soil ingested, the ratio of the mineral concentration in soil to that in herbage, and the ability of the cattle to solubilize and absorb the soil-derived minerals. The amount of soil ingested by cattle on pasture, in turn, depends upon the stocking level, the quantity of forage available, and the soil ingesting propensity of individual cows. The objective of this note ismore » to summarize some of the information about soil ingestion by dairy cattle and to suggest methods for incorporating soil ingestion into the Hanford Environmental Dose Reconstruction (HEDR) Phase I milk model. 5 refs., 4 tabs.« less

DNAPL REMOVAL MECHANISMS AND MASS TRANSFER CHARACTERISTICS DURING COSOLVENT-AIR FLOODING

EPA Science Inventory

The concurrent injection of cosolvent and air, a cosolvent-air (CA) flood was recently suggested for a dense nonaqueous phase liquid (DNAPL) remediation technology. The objectives of this study were to elucidate the DNAPL removal mechanisms of the CA flood and to quantify mass t...

Quantitative Determination of Perfluorochemicals and Fluorotelomer Alcohols in Plants from Biosolid-Amended Fields using LC/MS/MS and GC/MS

EPA Science Inventory

Analytical methods for determining perfluorochemicals (PFCs) and fluorotelomer alcohols (FTOHs) in plants using liquid chromatography/tandem mass spectrometry (LC/MS/MS) and gas chromatography/mass spectrometry (GC/MS) were developed, and applied to quantify a suite of analytes i...

Neuroscience and Accelerator Mass Spectrometry

DOE Office of Scientific and Technical Information (OSTI.GOV)

Palmblad, M N; Buchholz, B A; Hillegonds, D J

Accelerator mass spectrometry (AMS) is a mass spectrometric method for quantifying rare isotopes. It has had great impact in geochronology and archaeology and is now being applied in biomedicine. AMS measures radioisotopes such as {sup 3}H, {sup 14}C, {sup 26}Al, {sup 36}Cl and {sup 41}Ca, with zepto- or attomole sensitivity and high precision and throughput, enabling safe human pharmacokinetic studies involving: microgram doses, agents having low bioavailability, or toxicology studies where administered doses must be kept low (<1 {micro}g/kg). It is used to study long-term pharmacokinetics, to identify biomolecular interactions, to determine chronic and low-dose effects or molecular targets ofmore » neurotoxic substances, to quantify transport across the blood-brain barrier and to resolve molecular turnover rates in the human brain on the timescale of decades. We will here review how AMS is applied in neurotoxicology and neuroscience.« less

Does the planck mass run on the cosmological-horizon scale?

PubMed

Robbers, Georg; Afshordi, Niayesh; Doran, Michael

2008-03-21

Einstein's theory of general relativity contains a universal value of the Planck mass. However, one may envisage that in alternative theories of gravity the effective value of the Planck mass (or Newton's constant), which quantifies the coupling of matter to metric perturbations, can run on the cosmological-horizon scale. In this Letter, we study the consequences of a glitch in the Planck mass from subhorizon to superhorizon scales. We show that current cosmological observations severely constrain this glitch to less than 1.2%.

A new chemical tool for absinthe producers, quantification of α/β-thujone and the bitter components in Artemisia absinthium.

PubMed

Bach, Benoit; Cleroux, Marilyn; Saillen, Mayra; Schönenberger, Patrik; Burgos, Stephane; Ducruet, Julien; Vallat, Armelle

2016-12-15

The concentrations of α/β-thujone and the bitter components of Artemisia absinthium were quantified from alcoholic wormwood extracts during four phenological stages of their harvest period. A solid-phase micro-extraction method coupled to gas chromatography-mass spectrometry was used to determine the concentration of the two isomeric forms of thujone. In parallel, the combination of ultra-high pressure liquid chromatography and high resolution mass spectrometry allowed to quantify the compounds absinthin, artemisetin and dihydro-epi-deoxyarteannuin B. This present study aimed at helping absinthe producers to determine the best harvesting period. Copyright © 2016 Elsevier Ltd. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Woodroffe, J. R.; Brito, T. V.; Jordanova, V. K.

In the standard practice of neutron multiplicity counting , the first three sampled factorial moments of the event triggered neutron count distribution were used to quantify the three main neutron source terms: the spontaneous fissile material effective mass, the relative (α,n) production and the induced fission source responsible for multiplication. Our study compares three methods to quantify the statistical uncertainty of the estimated mass: the bootstrap method, propagation of variance through moments, and statistical analysis of cycle data method. Each of the three methods was implemented on a set of four different NMC measurements, held at the JRC-laboratory in Ispra,more » Italy, sampling four different Pu samples in a standard Plutonium Scrap Multiplicity Counter (PSMC) well counter.« less

Ergot alkaloids in Norwegian wild grasses: a mass spectrometric approach.

PubMed

Uhlig, Silvio; Vikøren, Turid; Ivanova, Lada; Handeland, Kjell

2007-01-01

Ergot alkaloids are mycotoxins which are produced among fungi in the family Clavicipitaceae. Poisoning with ergot alkaloids is an important veterinary problem in animal husbandry and has recently also been recognised in wild animals. While the poisoning syndrome observed in domestic animals such as cattle, horses and sheep is usually caused by endophyte-infected grass, the recently observed ergotism among Norwegian cervids is probably due to infection of wild grasses with Claviceps. Mass spectrometry is today the method of choice for the rapid qualitative and quantitative determination of many natural compounds. This study uses tandem quadrupole mass spectrometry as well as ion trap mass spectrometry in connection with electrospray(+) ionisation for the quantification, screening and fragmentation of ergot alkaloids in extracts from Claviceps sclerotia that had been picked from wild grasses from several locations in Norway. Ergotamine, ergovaline, ergonovine and ergocryptine were available as standards and were quantified in the extracts, while ergocrystine, ergocornine, ergonine/ergosine, lysergic acid and lysergol were identified on the basis of their molecular weights and semi-quantified. Ergocrystine dominated the alkaloid spectrum of most extracts. Levels of the quantified alkaloids were in the range 0.2-9300 microg/g. Several unknown ergot alkaloids were found in the extracts. MS(n) experiments identified some as simple lysergic acid amide derivatives, while othes are probably related to ergocrystine and ergocryptine by dehydration, dehydrogenation and/or amino acid substitution at R(1) of the peptide moiety.

Certification of NIST standard reference material 2389a, amino acids in 0.1 mol/L HCl--quantification by ID LC-MS/MS.

PubMed

Lowenthal, Mark S; Yen, James; Bunk, David M; Phinney, Karen W

2010-05-01

An isotope-dilution liquid chromatography-tandem mass spectrometry (ID LC-MS/MS) measurement procedure was developed to accurately quantify amino acid concentrations in National Institute of Standards and Technology (NIST) Standard Reference Material (SRM) 2389a-amino acids in 0.1 mol/L hydrochloric acid. Seventeen amino acids were quantified using selected reaction monitoring on a triple quadrupole mass spectrometer. LC-MS/MS results were compared to gravimetric measurements from the preparation of SRM 2389a-a reference material developed at NIST and intended for use in intra-laboratory calibrations and quality control. Quantitative mass spectrometry results and gravimetric values were statistically combined into NIST-certified mass fraction values with associated uncertainty estimates. Coefficients of variation (CV) for the repeatability of the LC-MS/MS measurements among amino acids ranged from 0.33% to 2.7% with an average CV of 1.2%. Average relative expanded uncertainty of the certified values including Types A and B uncertainties was 3.5%. Mean accuracy of the LC-MS/MS measurements with gravimetric preparation values agreed to within |1.1|% for all amino acids. NIST SRM 2389a will be available for characterization of routine methods for amino acid analysis and serves as a standard for higher-order measurement traceability. This is the first time an ID LC-MS/MS methodology has been applied for quantifying amino acids in a NIST SRM material.

Using chemical benchmarking to determine the persistence of chemicals in a Swedish lake.

PubMed

Zou, Hongyan; Radke, Michael; Kierkegaard, Amelie; MacLeod, Matthew; McLachlan, Michael S

2015-02-03

It is challenging to measure the persistence of chemicals under field conditions. In this work, two approaches for measuring persistence in the field were compared: the chemical mass balance approach, and a novel chemical benchmarking approach. Ten pharmaceuticals, an X-ray contrast agent, and an artificial sweetener were studied in a Swedish lake. Acesulfame K was selected as a benchmark to quantify persistence using the chemical benchmarking approach. The 95% confidence intervals of the half-life for transformation in the lake system ranged from 780-5700 days for carbamazepine to <1-2 days for ketoprofen. The persistence estimates obtained using the benchmarking approach agreed well with those from the mass balance approach (1-21% difference), indicating that chemical benchmarking can be a valid and useful method to measure the persistence of chemicals under field conditions. Compared to the mass balance approach, the benchmarking approach partially or completely eliminates the need to quantify mass flow of chemicals, so it is particularly advantageous when the quantification of mass flow of chemicals is difficult. Furthermore, the benchmarking approach allows for ready comparison and ranking of the persistence of different chemicals.

Quantifying solute transport processes: are chemically "conservative" tracers electrically conservative?

USGS Publications Warehouse

Singha, Kamini; Li, Li; Day-Lewis, Frederick D.; Regberg, Aaron B.

2012-01-01

The concept of a nonreactive or conservative tracer, commonly invoked in investigations of solute transport, requires additional study in the context of electrical geophysical monitoring. Tracers that are commonly considered conservative may undergo reactive processes, such as ion exchange, thus changing the aqueous composition of the system. As a result, the measured electrical conductivity may reflect not only solute transport but also reactive processes. We have evaluated the impacts of ion exchange reactions, rate-limited mass transfer, and surface conduction on quantifying tracer mass, mean arrival time, and temporal variance in laboratory-scale column experiments. Numerical examples showed that (1) ion exchange can lead to resistivity-estimated tracer mass, velocity, and dispersivity that may be inaccurate; (2) mass transfer leads to an overestimate in the mobile tracer mass and an underestimate in velocity when using electrical methods; and (3) surface conductance does not notably affect estimated moments when high-concentration tracers are used, although this phenomenon may be important at low concentrations or in sediments with high and/or spatially variable cation-exchange capacity. In all cases, colocated groundwater concentration measurements are of high importance for interpreting geophysical data with respect to the controlling transport processes of interest.

Rapid Quadrupole-Time-of-Flight Mass Spectrometry Method Quantifies Oxygen-Rich Lignin Compound in Complex Mixtures

NASA Astrophysics Data System (ADS)

Boes, Kelsey S.; Roberts, Michael S.; Vinueza, Nelson R.

2018-03-01

Complex mixture analysis is a costly and time-consuming task facing researchers with foci as varied as food science and fuel analysis. When faced with the task of quantifying oxygen-rich bio-oil molecules in a complex diesel mixture, we asked whether complex mixtures could be qualitatively and quantitatively analyzed on a single mass spectrometer with mid-range resolving power without the use of lengthy separations. To answer this question, we developed and evaluated a quantitation method that eliminated chromatography steps and expanded the use of quadrupole-time-of-flight mass spectrometry from primarily qualitative to quantitative as well. To account for mixture complexity, the method employed an ionization dopant, targeted tandem mass spectrometry, and an internal standard. This combination of three techniques achieved reliable quantitation of oxygen-rich eugenol in diesel from 300 to 2500 ng/mL with sufficient linearity (R2 = 0.97 ± 0.01) and excellent accuracy (percent error = 0% ± 5). To understand the limitations of the method, it was compared to quantitation attained on a triple quadrupole mass spectrometer, the gold standard for quantitation. The triple quadrupole quantified eugenol from 50 to 2500 ng/mL with stronger linearity (R2 = 0.996 ± 0.003) than the quadrupole-time-of-flight and comparable accuracy (percent error = 4% ± 5). This demonstrates that a quadrupole-time-of-flight can be used for not only qualitative analysis but also targeted quantitation of oxygen-rich lignin molecules in complex mixtures without extensive sample preparation. The rapid and cost-effective method presented here offers new possibilities for bio-oil research, including: (1) allowing for bio-oil studies that demand repetitive analysis as process parameters are changed and (2) making this research accessible to more laboratories. [Figure not available: see fulltext.

Rapid Quadrupole-Time-of-Flight Mass Spectrometry Method Quantifies Oxygen-Rich Lignin Compound in Complex Mixtures

NASA Astrophysics Data System (ADS)

Boes, Kelsey S.; Roberts, Michael S.; Vinueza, Nelson R.

2017-12-01

Complex mixture analysis is a costly and time-consuming task facing researchers with foci as varied as food science and fuel analysis. When faced with the task of quantifying oxygen-rich bio-oil molecules in a complex diesel mixture, we asked whether complex mixtures could be qualitatively and quantitatively analyzed on a single mass spectrometer with mid-range resolving power without the use of lengthy separations. To answer this question, we developed and evaluated a quantitation method that eliminated chromatography steps and expanded the use of quadrupole-time-of-flight mass spectrometry from primarily qualitative to quantitative as well. To account for mixture complexity, the method employed an ionization dopant, targeted tandem mass spectrometry, and an internal standard. This combination of three techniques achieved reliable quantitation of oxygen-rich eugenol in diesel from 300 to 2500 ng/mL with sufficient linearity (R2 = 0.97 ± 0.01) and excellent accuracy (percent error = 0% ± 5). To understand the limitations of the method, it was compared to quantitation attained on a triple quadrupole mass spectrometer, the gold standard for quantitation. The triple quadrupole quantified eugenol from 50 to 2500 ng/mL with stronger linearity (R2 = 0.996 ± 0.003) than the quadrupole-time-of-flight and comparable accuracy (percent error = 4% ± 5). This demonstrates that a quadrupole-time-of-flight can be used for not only qualitative analysis but also targeted quantitation of oxygen-rich lignin molecules in complex mixtures without extensive sample preparation. The rapid and cost-effective method presented here offers new possibilities for bio-oil research, including: (1) allowing for bio-oil studies that demand repetitive analysis as process parameters are changed and (2) making this research accessible to more laboratories. [Figure not available: see fulltext.

Rapid Quadrupole-Time-of-Flight Mass Spectrometry Method Quantifies Oxygen-Rich Lignin Compound in Complex Mixtures.

PubMed

Boes, Kelsey S; Roberts, Michael S; Vinueza, Nelson R

2018-03-01

Complex mixture analysis is a costly and time-consuming task facing researchers with foci as varied as food science and fuel analysis. When faced with the task of quantifying oxygen-rich bio-oil molecules in a complex diesel mixture, we asked whether complex mixtures could be qualitatively and quantitatively analyzed on a single mass spectrometer with mid-range resolving power without the use of lengthy separations. To answer this question, we developed and evaluated a quantitation method that eliminated chromatography steps and expanded the use of quadrupole-time-of-flight mass spectrometry from primarily qualitative to quantitative as well. To account for mixture complexity, the method employed an ionization dopant, targeted tandem mass spectrometry, and an internal standard. This combination of three techniques achieved reliable quantitation of oxygen-rich eugenol in diesel from 300 to 2500 ng/mL with sufficient linearity (R 2 = 0.97 ± 0.01) and excellent accuracy (percent error = 0% ± 5). To understand the limitations of the method, it was compared to quantitation attained on a triple quadrupole mass spectrometer, the gold standard for quantitation. The triple quadrupole quantified eugenol from 50 to 2500 ng/mL with stronger linearity (R 2 = 0.996 ± 0.003) than the quadrupole-time-of-flight and comparable accuracy (percent error = 4% ± 5). This demonstrates that a quadrupole-time-of-flight can be used for not only qualitative analysis but also targeted quantitation of oxygen-rich lignin molecules in complex mixtures without extensive sample preparation. The rapid and cost-effective method presented here offers new possibilities for bio-oil research, including: (1) allowing for bio-oil studies that demand repetitive analysis as process parameters are changed and (2) making this research accessible to more laboratories. Graphical Abstract ᅟ.

Hair-bundle proteomes of avian and mammalian inner-ear utricles

PubMed Central

Wilmarth, Phillip A.; Krey, Jocelyn F.; Shin, Jung-Bum; Choi, Dongseok; David, Larry L.; Barr-Gillespie, Peter G.

2015-01-01

Examination of multiple proteomics datasets within or between species increases the reliability of protein identification. We report here proteomes of inner-ear hair bundles from three species (chick, mouse, and rat), which were collected on LTQ or LTQ Velos ion-trap mass spectrometers; the constituent proteins were quantified using MS2 intensities, which are the summed intensities of all peptide fragmentation spectra matched to a protein. The data are available via ProteomeXchange with identifiers PXD002410 (chick LTQ), PXD002414 (chick Velos), PXD002415 (mouse Velos), and PXD002416 (rat LTQ). The two chick bundle datasets compared favourably to a third, already-described chick bundle dataset, which was quantified using MS1 peak intensities, the summed intensities of peptides identified by high-resolution mass spectrometry (PXD000104; updated analysis in PXD002445). The mouse bundle dataset described here was comparable to a different mouse bundle dataset quantified using MS1 intensities (PXD002167). These six datasets will be useful for identifying the core proteome of vestibular hair bundles. PMID:26645194

Fast quantification of endogenous carbohydrates in plasma using hydrophilic interaction liquid chromatography coupled with tandem mass spectrometry.

PubMed

Zhu, Bangjie; Liu, Feng; Li, Xituo; Wang, Yan; Gu, Xue; Dai, Jieyu; Wang, Guiming; Cheng, Yu; Yan, Chao

2015-01-01

Endogenous carbohydrates in biosamples are frequently highlighted as the most differential metabolites in many metabolomics studies. A simple, fast, simultaneous quantitative method for 16 endogenous carbohydrates in plasma has been developed using hydrophilic interaction liquid chromatography coupled with tandem mass spectrometry. In order to quantify 16 endogenous carbohydrates in plasma, various conditions, including columns, chromatographic conditions, mass spectrometry conditions, and plasma preparation methods, were investigated. Different conditions in this quantified analysis were performed and optimized. The reproducibility, precision, recovery, matrix effect, and stability of the method were verified. The results indicated that a methanol/acetonitrile (50:50, v/v) mixture could effectively and reproducibly precipitate rat plasma proteins. Cold organic solvents coupled with vortex for 1 min and incubated at -20°C for 20 min were the most optimal conditions for protein precipitation and extraction. The results, according to the linearity, recovery, precision, matrix effect, and stability, showed that the method was satisfactory in the quantification of endogenous carbohydrates in rat plasma. The quantified analysis of endogenous carbohydrates in rat plasma performed excellently in terms of sensitivity, high throughput, and simple sample preparation, which met the requirement of quantification in specific expanded metabolomic studies after the global metabolic profiling research. © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Atmospheric emissions from the Deepwater Horizon spill constrain air-water partitioning, hydrocarbon fate, and leak rate

NASA Astrophysics Data System (ADS)

Ryerson, T. B.; Aikin, K. C.; Angevine, W. M.; Atlas, E. L.; Blake, D. R.; Brock, C. A.; Fehsenfeld, F. C.; Gao, R.-S.; de Gouw, J. A.; Fahey, D. W.; Holloway, J. S.; Lack, D. A.; Lueb, R. A.; Meinardi, S.; Middlebrook, A. M.; Murphy, D. M.; Neuman, J. A.; Nowak, J. B.; Parrish, D. D.; Peischl, J.; Perring, A. E.; Pollack, I. B.; Ravishankara, A. R.; Roberts, J. M.; Schwarz, J. P.; Spackman, J. R.; Stark, H.; Warneke, C.; Watts, L. A.

2011-04-01

The fate of deepwater releases of gas and oil mixtures is initially determined by solubility and volatility of individual hydrocarbon species; these attributes determine partitioning between air and water. Quantifying this partitioning is necessary to constrain simulations of gas and oil transport, to predict marine bioavailability of different fractions of the gas-oil mixture, and to develop a comprehensive picture of the fate of leaked hydrocarbons in the marine environment. Analysis of airborne atmospheric data shows massive amounts (˜258,000 kg/day) of hydrocarbons evaporating promptly from the Deepwater Horizon spill; these data collected during two research flights constrain air-water partitioning, thus bioavailability and fate, of the leaked fluid. This analysis quantifies the fraction of surfacing hydrocarbons that dissolves in the water column (˜33% by mass), the fraction that does not dissolve, and the fraction that evaporates promptly after surfacing (˜14% by mass). We do not quantify the leaked fraction lacking a surface expression; therefore, calculation of atmospheric mass fluxes provides a lower limit to the total hydrocarbon leak rate of 32,600 to 47,700 barrels of fluid per day, depending on reservoir fluid composition information. This study demonstrates a new approach for rapid-response airborne assessment of future oil spills.

Intratracheal instillation of pravastatin for the treatment of murine allergic asthma: a lung-targeted approach to deliver statins

PubMed Central

Zeki, Amir A; Bratt, Jennifer M; Chang, Kevin Y; Franzi, Lisa M; Ott, Sean; Silveria, Mark; Fiehn, Oliver; Last, Jerold A; Kenyon, Nicholas J

2015-01-01

Systemic treatment with statins mitigates allergic airway inflammation, TH2 cytokine production, epithelial mucus production, and airway hyperreactivity (AHR) in murine models of asthma. We hypothesized that pravastatin delivered intratracheally would be quantifiable in lung tissues using mass spectrometry, achieve high drug concentrations in the lung with minimal systemic absorption, and mitigate airway inflammation and structural changes induced by ovalbumin. Male BALB/c mice were sensitized to ovalbumin (OVA) over 4 weeks, then exposed to 1% OVA aerosol or filtered air (FA) over 2 weeks. Mice received intratracheal instillations of pravastatin before and after each OVA exposure (30 mg/kg). Ultra performance liquid chromatography – mass spectrometry was used to quantify plasma, lung, and bronchoalveolar lavage fluid (BALF) pravastatin concentration. Pravastatin was quantifiable in mouse plasma, lung tissue, and BALF (BALF > lung > plasma for OVA and FA groups). At these concentrations pravastatin inhibited airway goblet cell hyperplasia/metaplasia, and reduced BALF levels of cytokines TNFα and KC, but did not reduce BALF total leukocyte or eosinophil cell counts. While pravastatin did not mitigate AHR, it did inhibit airway hypersensitivity (AHS). In this proof-of-principle study, using novel mass spectrometry methods we show that pravastatin is quantifiable in tissues, achieves high levels in mouse lungs with minimal systemic absorption, and mitigates some pathological features of allergic asthma. Inhaled pravastatin may be beneficial for the treatment of asthma by having direct airway effects independent of a potent anti-inflammatory effect. Statins with greater lipophilicity may achieve better anti-inflammatory effects warranting further research. PMID:25969462

Canine body composition quantification using 3 tesla fat-water MRI.

PubMed

Gifford, Aliya; Kullberg, Joel; Berglund, Johan; Malmberg, Filip; Coate, Katie C; Williams, Phillip E; Cherrington, Alan D; Avison, Malcolm J; Welch, E Brian

2014-02-01

To test the hypothesis that a whole-body fat-water MRI (FWMRI) protocol acquired at 3 Tesla combined with semi-automated image analysis techniques enables precise volume and mass quantification of adipose, lean, and bone tissue depots that agree with static scale mass and scale mass changes in the context of a longitudinal study of large-breed dogs placed on an obesogenic high-fat, high-fructose diet. Six healthy adult male dogs were scanned twice, at weeks 0 (baseline) and 4, of the dietary regiment. FWMRI-derived volumes of adipose tissue (total, visceral, and subcutaneous), lean tissue, and cortical bone were quantified using a semi-automated approach. Volumes were converted to masses using published tissue densities. FWMRI-derived total mass corresponds with scale mass with a concordance correlation coefficient of 0.931 (95% confidence interval = [0.813, 0.975]), and slope and intercept values of 1.12 and -2.23 kg, respectively. Visceral, subcutaneous and total adipose tissue masses increased significantly from weeks 0 to 4, while neither cortical bone nor lean tissue masses changed significantly. This is evidenced by a mean percent change of 70.2% for visceral, 67.0% for subcutaneous, and 67.1% for total adipose tissue. FWMRI can precisely quantify and map body composition with respect to adipose, lean, and bone tissue depots. The described approach provides a valuable tool to examine the role of distinct tissue depots in an established animal model of human metabolic disease. Copyright © 2013 Wiley Periodicals, Inc.

A SYSTEMATIC ANALYSIS OF CAUSTIC METHODS FOR GALAXY CLUSTER MASSES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gifford, Daniel; Miller, Christopher; Kern, Nicholas

We quantify the expected observed statistical and systematic uncertainties of the escape velocity as a measure of the gravitational potential and total mass of galaxy clusters. We focus our attention on low redshift (z {<=}0.15) clusters, where large and deep spectroscopic datasets currently exist. Utilizing a suite of Millennium Simulation semi-analytic galaxy catalogs, we find that the dynamical mass, as traced by either the virial relation or the escape velocity, is robust to variations in how dynamical friction is applied to ''orphan'' galaxies in the mock catalogs (i.e., those galaxies whose dark matter halos have fallen below the resolution limit).more » We find that the caustic technique recovers the known halo masses (M{sub 200}) with a third less scatter compared to the virial masses. The bias we measure increases quickly as the number of galaxies used decreases. For N{sub gal} > 25, the scatter in the escape velocity mass is dominated by projections along the line-of-sight. Algorithmic uncertainties from the determination of the projected escape velocity profile are negligible. We quantify how target selection based on magnitude, color, and projected radial separation can induce small additional biases into the escape velocity masses. Using N{sub gal} = 150 (25), the caustic technique has a per cluster scatter in ln (M|M{sub 200}) of 0.3 (0.5) and bias 1% {+-} 3{r_brace} (16% {+-} 5{r_brace}) for clusters with masses >10{sup 14} M{sub Sun} at z < 0.15.« less

Nitrate Removal in Two Relict Oxbow Urban Wetlands: A 15N Mass-balance Approach

EPA Science Inventory

A 15N-tracer method was used to quantify nitrogen (N) removal processes in two relict oxbow wetlands located adjacent to the Minebank Run restored stream reach in Baltimore County (Maryland, USA) during summer 2009 and early spring 2010. A mass-balance approach was used to determ...

A Quantitative Mass Spectrometry-based Approach for Identifying Protein Kinase-Clients and Quantifying Kinase Activity

USDA-ARS?s Scientific Manuscript database

The Homo sapiens and Arabidopsis thaliana genomes are believed to encode >500 and >1,000 protein kinases, respectively. Despite this abundance, few bona fide kinase-client relationships have been described in detail. Mass spectrometry (MS)-based approaches have been integral to the large-scale mapp...

FOOT PLACEMENT IN A BODY REFERENCE FRAME DURING WALKING AND ITS RELATIONSHIP TO HEMIPARETIC WALKING PERFORMANCE

PubMed Central

Balasubramanian, Chitralakshmi K.; Neptune, Richard R.; Kautz, Steven A.

2010-01-01

Background Foot placement during walking is closely linked to the body position, yet it is typically quantified relative to the other foot. The purpose of this study was to quantify foot placement patterns relative to body post-stroke and investigate its relationship to hemiparetic walking performance. Methods Thirty-nine participants with hemiparesis walked on a split-belt treadmill at their self-selected speeds and twenty healthy participants walked at matched slow speeds. Anterior-posterior and medial-lateral foot placements (foot center-of-mass) relative to body (pelvis center-of-mass) quantified stepping in body reference frame. Walking performance was quantified using step length asymmetry ratio, percent of paretic propulsion and paretic weight support. Findings Participants with hemiparesis placed their paretic foot further anterior than posterior during walking compared to controls walking at matched slow speeds (p < .05). Participants also placed their paretic foot further lateral relative to pelvis than non-paretic (p < .05). Anterior-posterior asymmetry correlated with step length asymmetry and percent paretic propulsion but some persons revealed differing asymmetry patterns in the translating reference frame. Lateral foot placement asymmetry correlated with paretic weight support (r = .596; p < .001), whereas step widths showed no relation to paretic weight support. Interpretation Post-stroke gait is asymmetric when quantifying foot placement in a body reference frame and this asymmetry related to the hemiparetic walking performance and explained motor control mechanisms beyond those explained by step lengths and step widths alone. We suggest that biomechanical analyses quantifying stepping performance in impaired populations should investigate foot placement in a body reference frame. PMID:20193972

Foot placement in a body reference frame during walking and its relationship to hemiparetic walking performance.

PubMed

Balasubramanian, Chitralakshmi K; Neptune, Richard R; Kautz, Steven A

2010-06-01

Foot placement during walking is closely linked to the body position, yet it is typically quantified relative to the other foot. The purpose of this study was to quantify foot placement patterns relative to body post-stroke and investigate its relationship to hemiparetic walking performance. Thirty-nine participants with hemiparesis walked on a split-belt treadmill at their self-selected speeds and 20 healthy participants walked at matched slow speeds. Anterior-posterior and medial-lateral foot placements (foot center-of-mass) relative to body (pelvis center-of-mass) quantified stepping in body reference frame. Walking performance was quantified using step length asymmetry ratio, percent of paretic propulsion and paretic weight support. Participants with hemiparesis placed their paretic foot further anterior than posterior during walking compared to controls walking at matched slow speeds (P<.05). Participants also placed their paretic foot further lateral relative to pelvis than non-paretic (P<.05). Anterior-posterior asymmetry correlated with step length asymmetry and percent paretic propulsion but some persons revealed differing asymmetry patterns in the translating reference frame. Lateral foot placement asymmetry correlated with paretic weight support (r=.596; P<.001), whereas step widths showed no relation to paretic weight support. Post-stroke gait is asymmetric when quantifying foot placement in a body reference frame and this asymmetry related to the hemiparetic walking performance and explained motor control mechanisms beyond those explained by step lengths and step widths alone. We suggest that biomechanical analyses quantifying stepping performance in impaired populations should investigate foot placement in a body reference frame. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

GCMS/MS Analyses of Biological Samples in Support of Evaluation of Toxicity Associated with Intravenous Exposure to VX Stereoisomers in Guinea Pigs

DTIC Science & Technology

2017-07-01

14. ABSTRACT: This report documents the results of the gas chromatography–tandem mass spectrometry analyses of blood, tissues, and organs (heart...quantified using chemical ionization mass spectrometry with isotope dilution. 15. SUBJECT TERMS Gas chromatography–tandem mass spectrometry (GC–MS...characterize the pharmacokinetics of the individual stereoisomers and their racemic mixtures. This report details the results of gas chromatography–tandem

Determination of 90Sr / 238U ratio by double isotope dilution inductively coupled plasma mass spectrometer with multiple collection in spent nuclear fuel samples with in situ 90Sr / 90Zr separation in a collision-reaction cell

NASA Astrophysics Data System (ADS)

Isnard, H.; Aubert, M.; Blanchet, P.; Brennetot, R.; Chartier, F.; Geertsen, V.; Manuguerra, F.

2006-02-01

Strontium-90 is one of the most important fission products generated in nuclear industry. In the research field concerning nuclear waste disposal in deep geological environment, it is necessary to quantify accurately and precisely its concentration (or the 90Sr / 238U atomic ratio) in irradiated fuels. To obtain accurate analysis of radioactive 90Sr, mass spectrometry associated with isotope dilution is the most appropriated method. But, in nuclear fuel samples the interference with 90Zr must be previously eliminated. An inductively coupled plasma mass spectrometer with multiple collection, equipped with an hexapole collision cell, has been used to eliminate the 90Sr / 90Zr interference by addition of oxygen in the collision cell as a reactant gas. Zr + ions are converted into ZrO +, whereas Sr + ions are not reactive. A mixed solution, prepared from a solution of enriched 84Sr and a solution of enriched 235U was then used to quantify the 90Sr / 238U ratio in spent fuel sample solutions using the double isotope dilution method. This paper shows the results, the reproducibility and the uncertainties that can be obtained with this method to quantify the 90Sr / 238U atomic ratio in an UOX (uranium oxide) and a MOX (mixed oxide) spent fuel samples using the collision cell of an inductively coupled plasma mass spectrometer with multiple collection to perform the 90Sr / 90Zr separation. A comparison with the results obtained by inductively coupled plasma mass spectrometer with multiple collection after a chemical separation of strontium from zirconium using a Sr spec resin (Eichrom) has been performed. Finally, to validate the analytical procedure developed, measurements of the same samples have been performed by thermal ionization mass spectrometry, used as an independent technique, after chemical separation of Sr.

Prediction of digestibility and energy concentration of winter pasture forage and herbage of low-input grassland--a comparison of methods.

PubMed

Opitz v Boberfeld, W; Theobald, P C; Laser, H

2003-06-01

Regarding the estimation of the energy concentration or digestibility of herb-dominated forage and plant samples from winter pastures, it could be expected that the estimation is only reliable when in vitro methods with rumen fluid as inoculum (= gas production techniques) are used. For the verification of this thesis based on logical reflections, an in vitro-method with rumen fluid added as inoculum, as well as chemical, and enzymatic methods were applied under consideration of existing estimating functions. As a possible reason for the observed divergence of the methods, effects of fungal infections or, respectively, secondary compounds in herbs are discussed. At the present state of knowledge, it is adequate to estimate the energy concentration in vitro by gas tests, as far as fattening types like suckler cows and beef cattle are concerned, maybe in contrast to the forage evaluation for dairy cows.

SURVEYS OF RADIOACTIVITY IN HUMAN DIET AND EXPERIMENTAL STUDIES. Report for 1960

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

1961-11-16

Results are presented from a survey of Sr/sup 90/ in human diet in the United Kingdom during 1960. Data are included from a country-wide survey, which enabled the assessment of the mean ratio of Sr/sup 90/ to Ca in the average diet of the population, and local studies in areas where the quantity of Sr/sup 90/ was likely to exceed the average. Measurements were also made of Sr/sup 90/ in herbage and soil from representative pastures throughout the country, and Cs/sup 137/ in milk produced in the United Kingdom during 1960. Results are included from experimental studies of factors affectingmore » the passage of Sr/sup 90/ through food chains. Limited data are also included on Sr/sup 90/ in selected foods from Australia, the Republic of Ireland, and the Federation of Rhodesia and Nyasaland. (C.H.)« less

Data-optimized source modeling with the Backwards Liouville Test–Kinetic method

DOE PAGES

Woodroffe, J. R.; Brito, T. V.; Jordanova, V. K.; ...

2017-09-14

In the standard practice of neutron multiplicity counting , the first three sampled factorial moments of the event triggered neutron count distribution were used to quantify the three main neutron source terms: the spontaneous fissile material effective mass, the relative (α,n) production and the induced fission source responsible for multiplication. Our study compares three methods to quantify the statistical uncertainty of the estimated mass: the bootstrap method, propagation of variance through moments, and statistical analysis of cycle data method. Each of the three methods was implemented on a set of four different NMC measurements, held at the JRC-laboratory in Ispra,more » Italy, sampling four different Pu samples in a standard Plutonium Scrap Multiplicity Counter (PSMC) well counter.« less

Temperature coefficient for modeling denitrification in surface water sediments using the mass transfer coefficient

Treesearch

T.W. Appelboom; G.M. Chescheir; F. Birgand; R.W. Skaggs; J.W. Gilliam; D. Amatya

2010-01-01

Watershed modeling has become an important tool for researchers. Modeling nitrate transport within drainage networks requires quantifying the denitrification within the sediments in canals and streams. In a previous study, several of the authors developed an equation using a term called a mass transfer coefficient to mathematically describe sediment denitrification....

Temperature coefficient for modeling denitrification in surface water sediments using the mass transfer coefficient.

Treesearch

T.W. Appelboom; G.M. Chescheir; F. Birgand; R.W. Skaggs; J.W. Gilliam; D. Amatya

2010-01-01

Watershed modeling has become an important tool for researchers. Modeling nitrate transport within drainage networks requires quantifying the denitrification within the sediments in canals and streams. In a previous study, several of the authors developed an equation using a term called a mass transfer coefficient to mathematically describe sediment denitrification....

Climate Change Discourse in Mass Media: Application of Computer-Assisted Content Analysis

ERIC Educational Resources Information Center

Kirilenko, Andrei P.; Stepchenkova, Svetlana O.

2012-01-01

Content analysis of mass media publications has become a major scientific method used to analyze public discourse on climate change. We propose a computer-assisted content analysis method to extract prevalent themes and analyze discourse changes over an extended period in an objective and quantifiable manner. The method includes the following: (1)…

Quantitative, multiplexed workflow for deep analysis of human blood plasma and biomarker discovery by mass spectrometry.

PubMed

Keshishian, Hasmik; Burgess, Michael W; Specht, Harrison; Wallace, Luke; Clauser, Karl R; Gillette, Michael A; Carr, Steven A

2017-08-01

Proteomic characterization of blood plasma is of central importance to clinical proteomics and particularly to biomarker discovery studies. The vast dynamic range and high complexity of the plasma proteome have, however, proven to be serious challenges and have often led to unacceptable tradeoffs between depth of coverage and sample throughput. We present an optimized sample-processing pipeline for analysis of the human plasma proteome that provides greatly increased depth of detection, improved quantitative precision and much higher sample analysis throughput as compared with prior methods. The process includes abundant protein depletion, isobaric labeling at the peptide level for multiplexed relative quantification and ultra-high-performance liquid chromatography coupled to accurate-mass, high-resolution tandem mass spectrometry analysis of peptides fractionated off-line by basic pH reversed-phase (bRP) chromatography. The overall reproducibility of the process, including immunoaffinity depletion, is high, with a process replicate coefficient of variation (CV) of <12%. Using isobaric tags for relative and absolute quantitation (iTRAQ) 4-plex, >4,500 proteins are detected and quantified per patient sample on average, with two or more peptides per protein and starting from as little as 200 μl of plasma. The approach can be multiplexed up to 10-plex using tandem mass tags (TMT) reagents, further increasing throughput, albeit with some decrease in the number of proteins quantified. In addition, we provide a rapid protocol for analysis of nonfractionated depleted plasma samples analyzed in 10-plex. This provides ∼600 quantified proteins for each of the ten samples in ∼5 h of instrument time.

Determination of four forms of vitamin B12 and other B vitamins in seawater by liquid chromatography/tandem mass spectrometry.

PubMed

Heal, Katherine R; Carlson, Laura Truxal; Devol, Allan H; Armbrust, E Virginia; Moffett, James W; Stahl, David A; Ingalls, Anitra E

2014-11-30

Vitamin B(12) is an essential nutrient for more than half of surveyed marine algae species, but methods for directly measuring this important cofactor in seawater are limited. Current mass spectrometry methods do not quantify all forms of B(12), potentially missing a significant portion of the B(12) pool. We present a method to measure vitamins B(1), B(2), B(6), B(7) and four forms of B(12) dissolved in seawater. The method entails solid-phase extraction, separation by ultra-performance liquid chromatography, and detection by triple-quadrupole tandem mass spectrometry using stable-isotope-labeled internal standards. We demonstrated the use of this method in the environment by analyzing B(12) concentrations at different depths in the Hood Canal, part of the Puget Sound estuarine system in Washington State. Recovery of vitamin B(12) forms during the preconcentration steps was >71% and the limits of detection were <0.275 pM in seawater. Standard addition calibration curves in three different seawater matrices were used to determine analytical response and to quantify samples from the environment. Hydroxocobalamin was the main form of B(12) in seawater at our field site. We developed a method for quantifying four forms of B(12) in seawater by liquid chromatography/mass spectrometry with the option of simultaneous analysis of vitamins B(1), B(2), B(6), and B(7). We validated the method and demonstrated its application in the field. Copyright © 2014 John Wiley & Sons, Ltd.

Left ventricular hypertrophy: The relationship between the electrocardiogram and cardiovascular magnetic resonance imaging.

PubMed

Bacharova, Ljuba; Ugander, Martin

2014-11-01

Conventional assessment of left ventricular hypertrophy (LVH) using the electrocardiogram (ECG), for example, by the Sokolow-Lyon, Romhilt-Estes or Cornell criteria, have relied on assessing changes in the amplitude and/or duration of the QRS complex of the ECG to quantify LV mass. ECG measures of LV mass have typically been validated by imaging with echocardiography or cardiovascular magnetic resonance imaging (CMR). However, LVH can be the result of diverse etiologies, and LVH is also characterized by pathological changes in myocardial tissue characteristics on the genetic, molecular, cellular, and tissue level beyond a pure increase in the number of otherwise normal cardiomyocytes. For example, slowed conduction velocity through the myocardium, which can be due to diffuse myocardial fibrosis, has been shown to be an important determinant of conventional ECG LVH criteria regardless of LV mass. Myocardial tissue characterization by CMR has emerged to not only quantify LV mass, but also detect and quantify the extent and severity of focal or diffuse myocardial fibrosis, edema, inflammation, myocarditis, fatty replacement, myocardial disarray, and myocardial deposition of amyloid proteins (amyloidosis), glycolipids (Fabry disease), or iron (siderosis). This can be undertaken using CMR techniques including late gadolinium enhancement (LGE), T1 mapping, T2 mapping, T2* mapping, extracellular volume fraction (ECV) mapping, fat/water-weighted imaging, and diffusion tensor CMR. This review presents an overview of current and emerging concepts regarding the diagnostic possibilities of both ECG and CMR for LVH in an attempt to narrow gaps in our knowledge regarding the ECG diagnosis of LVH. © 2014 Wiley Periodicals, Inc.

Quantifying ecological impacts of mass extinctions with network analysis of fossil communities

PubMed Central

Muscente, A. D.; Prabhu, Anirudh; Zhong, Hao; Eleish, Ahmed; Meyer, Michael B.; Fox, Peter; Hazen, Robert M.; Knoll, Andrew H.

2018-01-01

Mass extinctions documented by the fossil record provide critical benchmarks for assessing changes through time in biodiversity and ecology. Efforts to compare biotic crises of the past and present, however, encounter difficulty because taxonomic and ecological changes are decoupled, and although various metrics exist for describing taxonomic turnover, no methods have yet been proposed to quantify the ecological impacts of extinction events. To address this issue, we apply a network-based approach to exploring the evolution of marine animal communities over the Phanerozoic Eon. Network analysis of fossil co-occurrence data enables us to identify nonrandom associations of interrelated paleocommunities. These associations, or evolutionary paleocommunities, dominated total diversity during successive intervals of relative community stasis. Community turnover occurred largely during mass extinctions and radiations, when ecological reorganization resulted in the decline of one association and the rise of another. Altogether, we identify five evolutionary paleocommunities at the generic and familial levels in addition to three ordinal associations that correspond to Sepkoski’s Cambrian, Paleozoic, and Modern evolutionary faunas. In this context, we quantify magnitudes of ecological change by measuring shifts in the representation of evolutionary paleocommunities over geologic time. Our work shows that the Great Ordovician Biodiversification Event had the largest effect on ecology, followed in descending order by the Permian–Triassic, Cretaceous–Paleogene, Devonian, and Triassic–Jurassic mass extinctions. Despite its taxonomic severity, the Ordovician extinction did not strongly affect co-occurrences of taxa, affirming its limited ecological impact. Network paleoecology offers promising approaches to exploring ecological consequences of extinctions and radiations. PMID:29686079

Quantifying ecological impacts of mass extinctions with network analysis of fossil communities.

PubMed

Muscente, A D; Prabhu, Anirudh; Zhong, Hao; Eleish, Ahmed; Meyer, Michael B; Fox, Peter; Hazen, Robert M; Knoll, Andrew H

2018-05-15

Mass extinctions documented by the fossil record provide critical benchmarks for assessing changes through time in biodiversity and ecology. Efforts to compare biotic crises of the past and present, however, encounter difficulty because taxonomic and ecological changes are decoupled, and although various metrics exist for describing taxonomic turnover, no methods have yet been proposed to quantify the ecological impacts of extinction events. To address this issue, we apply a network-based approach to exploring the evolution of marine animal communities over the Phanerozoic Eon. Network analysis of fossil co-occurrence data enables us to identify nonrandom associations of interrelated paleocommunities. These associations, or evolutionary paleocommunities, dominated total diversity during successive intervals of relative community stasis. Community turnover occurred largely during mass extinctions and radiations, when ecological reorganization resulted in the decline of one association and the rise of another. Altogether, we identify five evolutionary paleocommunities at the generic and familial levels in addition to three ordinal associations that correspond to Sepkoski's Cambrian, Paleozoic, and Modern evolutionary faunas. In this context, we quantify magnitudes of ecological change by measuring shifts in the representation of evolutionary paleocommunities over geologic time. Our work shows that the Great Ordovician Biodiversification Event had the largest effect on ecology, followed in descending order by the Permian-Triassic, Cretaceous-Paleogene, Devonian, and Triassic-Jurassic mass extinctions. Despite its taxonomic severity, the Ordovician extinction did not strongly affect co-occurrences of taxa, affirming its limited ecological impact. Network paleoecology offers promising approaches to exploring ecological consequences of extinctions and radiations. Copyright © 2018 the Author(s). Published by PNAS.

Quasi Real Time Data Analysis for Air Quality Monitoring with an Electronic Nose

NASA Technical Reports Server (NTRS)

Zhou, Hanying; Shevade, Abhijit V.; Pelletier, Christine C.; Homer, Margie L.; Ryan, M. Amy

2006-01-01

Cabin Air Quality Monitoring: A) Functions; 1) Incident monitor for targeted contaminants exceeding targeted concentrations. Identify and quantify. 2) Monitor for presence of compounds associated with fires or overheating electronics. 3) Monitor clean-up process. B) Characteristics; 1) Low mass, low power device. 2) Requires little crew time for maintenance and calibration. 3) Detects, identifies and quantifies selected chemical species at or below 24 hour SMAC.

Predictive modeling of transient storage and nutrient uptake: Implications for stream restoration

USGS Publications Warehouse

O'Connor, Ben L.; Hondzo, Miki; Harvey, Judson W.

2010-01-01

This study examined two key aspects of reactive transport modeling for stream restoration purposes: the accuracy of the nutrient spiraling and transient storage models for quantifying reach-scale nutrient uptake, and the ability to quantify transport parameters using measurements and scaling techniques in order to improve upon traditional conservative tracer fitting methods. Nitrate (NO3–) uptake rates inferred using the nutrient spiraling model underestimated the total NO3– mass loss by 82%, which was attributed to the exclusion of dispersion and transient storage. The transient storage model was more accurate with respect to the NO3– mass loss (±20%) and also demonstrated that uptake in the main channel was more significant than in storage zones. Conservative tracer fitting was unable to produce transport parameter estimates for a riffle-pool transition of the study reach, while forward modeling of solute transport using measured/scaled transport parameters matched conservative tracer breakthrough curves for all reaches. Additionally, solute exchange between the main channel and embayment surface storage zones was quantified using first-order theory. These results demonstrate that it is vital to account for transient storage in quantifying nutrient uptake, and the continued development of measurement/scaling techniques is needed for reactive transport modeling of streams with complex hydraulic and geomorphic conditions.

An Approach for Determining Quantitative Measures for Bone Volume and Bone Mass in the Pediatric Spina Bifida Population

PubMed Central

Horenstein, Rachel E.; Shefelbine, Sandra J.; Mueske, Nicole M.; Fisher, Carissa L.; Wren, Tishya A.L.

2015-01-01

Background The pediatric spina bifida population suffers from decreased mobility and recurrent fractures. This study aimed to develop a method for quantifying bone mass along the entire tibia in youth with spina bifida. This will provide information about all potential sites of bone deficiencies. Methods Computed tomography images of the tibia for 257 children (n=80 ambulatory spina bifida, n=10 non-ambulatory spina bifida, n=167 typically developing) were analyzed. Bone area was calculated at regular intervals along the entire tibia length and then weighted by calibrated pixel intensity for density weighted bone area. Integrals of density weighted bone area were used to quantify bone mass in the proximal and distal epiphyses and diaphysis. Group differences were evaluated using analysis of variance. Findings Non-ambulatory children suffer from decreased bone mass in the diaphysis and proximal and distal epiphyses compared to ambulatory and control children (P≤0.001). Ambulatory children with spina bifida showed statistically insignificant differences in bone mass in comparison to typically developing children at these sites (P>0.5). Interpretation This method provides insight into tibial bone mass distribution in the pediatric spina bifida population by incorporating information along the whole length of the bone, thereby providing more information than dual-energy x-ray absorptiometry and peripheral quantitative computed tomography. This method can be applied to any population to assess bone mass distribution across the length of any long bone. PMID:26002057

Clinical review: improving the measurement of serum thyroglobulin with mass spectrometry.

PubMed

Hoofnagle, Andrew N; Roth, Mara Y

2013-04-01

Serum thyroglobulin (Tg) measurements are central to the management of patients treated for differentiated thyroid carcinoma. For decades, Tg measurements have relied on methods that are subject to interference by commonly found substances in human serum and plasma, such as Tg autoantibodies. As a result, many patients need additional imaging studies to rule out cancer persistence or recurrence that could be avoided with more sensitive and specific testing methods. The aims of this review are to: 1) briefly review the interferences common to Tg immunoassays; 2) introduce readers to liquid chromatography-tandem mass spectrometry as a method for quantifying proteins in human serum/plasma; and 3) discuss the potential benefits and limitations of the method in the quantification of serum Tg. Mass spectrometric methods have traditionally lacked the sensitivity, robustness, and throughput to be useful clinical assays. These methods failed to meet the necessary clinical benchmarks due to the nature of the mass spectrometry workflow and instrumentation. Over the past few years, there have been major advances in reagents, automation, and instrumentation for the quantification of proteins using mass spectrometry. More recently, methods using mass spectrometry to detect and quantify Tg have been developed and are of sufficient quality to be used in the management of patients. Novel serum Tg assays that use mass spectrometry may avoid the issue of autoantibody interference and other problems with currently available immunoassays for Tg. Prospective studies are needed to fully understand the potential benefits of novel Tg assays to patients and care providers.

Analysis of Seasonal Variability in Gulf of Alaska Glacier Mass Balance using GRACE

NASA Astrophysics Data System (ADS)

Arendt, A. A.; Luthcke, S. B.; Oneel, S.; Gardner, A. S.; Hill, D. F.

2011-12-01

Mass variations of glaciers in Alaska/northwestern Canada must be quantified in order to assess impacts on ecosystems, human infrastructure, and global sea level. Here we combine Gravity Recovery and Climate Experiment (GRACE) observations with a wide range of satellite and field data to investigate drivers of these recent changes, with a focus on seasonal variations. Our central focus will be the exceptionally high mass losses of 2009, which do not correlate with weather station temperature and precipitation data, but may be linked to ash fall from the March 31, 2009 eruption of Mt. Redoubt. The eruption resulted in a significant decrease in MODIS-derived surface albedo over many Alaska glacier regions, and likely contributed to some of the 2009 anomalous mass loss observed by GRACE. We also focus on the Juneau and Stikine Icefield regions that are far from the volcanic eruption but experienced the largest mass losses of any region in 2009. Although rapid drawdown of tidewater glaciers was occurring in southeast Alaska during 2009, we show these changes were probably not sufficiently widespread to explain all of the GRACE signal in those regions. We examine additional field and satellite datasets to quantify potential errors in the climate and GRACE fields that could result in the observed discrepancy.

Advancing from Rules of Thumb: Quantifying the Effects of Small Density Changes in Mass Transport to Electrodes. Understanding Natural Convection.

PubMed

Ngamchuea, Kamonwad; Eloul, Shaltiel; Tschulik, Kristina; Compton, Richard G

2015-07-21

Understanding mass transport is prerequisite to all quantitative analysis of electrochemical experiments. While the contribution of diffusion is well understood, the influence of density gradient-driven natural convection on the mass transport in electrochemical systems is not. To date, it has been assumed to be relevant only for high concentrations of redox-active species and at long experimental time scales. If unjustified, this assumption risks misinterpretation of analytical data obtained from scanning electrochemical microscopy (SECM) and generator-collector experiments, as well as analytical sensors utilizing macroelectrodes/microelectrode arrays. It also affects the results expected from electrodeposition. On the basis of numerical simulation, herein it is demonstrated that even at less than 10 mM concentrations and short experimental times of tens of seconds, density gradient-driven natural convection significantly affects mass transport. This is evident from in-depth numerical simulation for the oxidation of hexacyanoferrate (II) at various electrode sizes and electrode orientations. In each case, the induced convection and its influence on the diffusion layer established near the electrode are illustrated by maps of the velocity fields and concentration distributions evolving with time. The effects of natural convection on mass transport and chronoamperometric currents are thus quantified and discussed for the different cases studied.

Assessing risks from drought and heat stress in productive grasslands under present and future climatic conditions

NASA Astrophysics Data System (ADS)

Calanca, Pierluigi; Mosimann, Eric; Meisser, Marco; Deléglise, Claire

2014-05-01

Grasslands cover the majority of the world's agricultural area, provide the feedstock for animal production, contribute to the economy of farms, and deliver a variety of ecological and societal services. Assessing responses of grassland ecosystems to climate change, in particular climate-related risks, is therefore an important step toward identifying adaptation options necessary to secure grassland functioning and productivity. Of particular concern are risks in relation to drought and extreme temperatures, on the one hand because grasslands are very sensitive to water stress, on the other hand also because global warming is expected to increase the occurrence and intensity of these events in many agricultural areas of the world. In this contribution we review findings of ongoing experimental and modelling activities that aim at examining the implications of climate extremes and climate change for grassland vegetation dynamics and herbage productivity. Data collected at the Jura foot in western Switzerland indicate that water scarcity and associated anomalous temperatures slowed plant development in relation to both the summer drought of 2003 as well as the spring drought of 2011, with decline in annual yields of up to 40%. Further effects of drought found from the analysis of recent field trials explicitly designed to study the effects of different water management regimes are changes in the functional composition and nutritive value of grasslands. Similar responses are disclosed by simulations with a process based grassland ecosystem model that was originally developed for the simulation of mixed grass/clover swards. Simulations driven with historical weather records from the Swiss Plateau suggest that drought and extreme temperature could represent one of the main reasons for the observed yield variability in productive systems. Simulations with climate change scenarios further reveal important changes in ecosystem dynamics for the current century. The results show that herbage growth could basically benefit from increasing temperatures and CO2 concentrations, which promote in particular the development of clover. However, productivity is found to decline in the long term on the background of a projected decrease in summer precipitation. This has implications for future grassland production across Europe and in other agricultural area of the world, and calls for the adoption of adaptation measures.

Comparison of three 15N methods to correct for microbial contamination when assessing in situ protein degradability of fresh forages.

PubMed

Kamoun, M; Ammar, H; Théwis, A; Beckers, Y; France, J; López, S

2014-11-01

The use of stable (15)N as a marker to determine microbial contamination in nylon bag incubation residues to estimate protein degradability was investigated. Three methods using (15)N were compared: (15)N-labeled forage (dilution method, LF), (15)N enrichment of rumen solids-associated bacteria (SAB), and (15)N enrichment of rumen liquid-associated bacteria (LAB). Herbage from forages differing in protein and fiber contents (early-cut Italian ryegrass, late-cut Italian ryegrass, and red clover) were freeze-dried and ground and then incubated in situ in the rumen of 3 steers for 3, 6, 12, 24, and 48 h using the nylon bag technique. The (15)N-labeled forages were obtained by fertilizing the plots where herbage was grown with (15)NH4 (15)NO3. Unlabeled forages (obtained from plots fertilized with NH4NO3) were incubated at the same time that ((15)NH4)2SO4 was continuously infused into the rumen of the steers, and then pellets of labeled SAB and LAB were isolated by differential centrifugation of samples of ruminal contents. The proportion of bacterial N in the incubation residues increased from 0.09 and 0.45 g bacterial N/g total N at 3 h of incubation to 0.37 and 0.85 g bacterial N/g total N at 48 h of incubation for early-cut and late-cut ryegrass, respectively. There were differences (P < 0.001) between uncorrected N degradability values and those corrected for microbial contamination with all of the methods. Apparent N degradability of the low-N, high-fiber forage (late-cut ryegrass) was 0.51, whereas the corrected values were 0.85, 0.84, and 0.77 for the LF, SAB, and LAB methods, respectively. With early-cut ryegrass and red clover, the differences between uncorrected and corrected values ranged between 6% and 13%, with small differences among the labeling methods. Generally, methods using labeled forage or labeled SAB and LAB provided similar corrected degradability values. The accuracy in estimating the extent of degradation of protein in the rumen from in situ disappearance curves is improved when values are corrected for microbial contamination of the bag residue.

Quantitative analysis of polyhexamethylene guanidine (PHMG) oligomers via matrix-assisted laser desorption/ionization time-of-flight mass spectrometry with an ionic-liquid matrix.

PubMed

Yoon, Donhee; Lee, Dongkun; Lee, Jong-Hyeon; Cha, Sangwon; Oh, Han Bin

2015-01-30

Quantifying polymers by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOFMS) with a conventional crystalline matrix generally suffers from poor sample-to-sample or shot-to-shot reproducibility. An ionic-liquid matrix has been demonstrated to mitigate these reproducibility issues by providing a homogeneous sample surface, which is useful for quantifying polymers. In the present study, we evaluated the use of an ionic liquid matrix, i.e., 1-methylimidazolium α-cyano-4-hydroxycinnamate (1-MeIm-CHCA), to quantify polyhexamethylene guanidine (PHMG) samples that impose a critical health hazard when inhaled in the form of droplets. MALDI-TOF mass spectra were acquired for PHMG oligomers using a variety of ionic-liquid matrices including 1-MeIm-CHCA. Calibration curves were constructed by plotting the sum of the PHMG oligomer peak areas versus PHMG sample concentration with a variety of peptide internal standards. Compared with the conventional crystalline matrix, the 1-MeIm-CHCA ionic-liquid matrix had much better reproducibility (lower standard deviations). Furthermore, by using an internal peptide standard, good linear calibration plots could be obtained over a range of PMHG concentrations of at least 4 orders of magnitude. This study successfully demonstrated that PHMG samples can be quantitatively characterized by MALDI-TOFMS with an ionic-liquid matrix and an internal standard. Copyright © 2014 John Wiley & Sons, Ltd.

Galaxy Cluster Mass Reconstruction Project - II. Quantifying scatter and bias using contrasting mock catalogues

DOE PAGES

Old, L.; Wojtak, R.; Mamon, G. A.; ...

2015-03-26

Our paper is the second in a series in which we perform an extensive comparison of various galaxy-based cluster mass estimation techniques that utilize the positions, velocities and colours of galaxies. Our aim is to quantify the scatter, systematic bias and completeness of cluster masses derived from a diverse set of 25 galaxy-based methods using two contrasting mock galaxy catalogues based on a sophisticated halo occupation model and a semi-analytic model. Analysing 968 clusters, we find a wide range in the rms errors in log M200c delivered by the different methods (0.18–1.08 dex, i.e. a factor of ~1.5–12), with abundance-matchingmore » and richness methods providing the best results, irrespective of the input model assumptions. In addition, certain methods produce a significant number of catastrophic cases where the mass is under- or overestimated by a factor greater than 10. Given the steeply falling high-mass end of the cluster mass function, we recommend that richness- or abundance-matching-based methods are used in conjunction with these methods as a sanity check for studies selecting high-mass clusters. We also see a stronger correlation of the recovered to input number of galaxies for both catalogues in comparison with the group/cluster mass, however, this does not guarantee that the correct member galaxies are being selected. Finally, we did not observe significantly higher scatter for either mock galaxy catalogues. These results have implications for cosmological analyses that utilize the masses, richnesses, or abundances of clusters, which have different uncertainties when different methods are used.« less

Effects of vehicle front-end stiffness on rear seat dummies in NCAP and FMVSS208 tests.

PubMed

Sahraei, Elham; Digges, Kennerly; Marzougui, Dhafer

2013-01-01

This study is devoted to quantifying changes in mass and stiffness of vehicles tested by the National Highway Traffic Safety Administration (NHTSA) over the past 3 decades (model years 1982 to 2010) and understanding the effect of those changes on protection of rear seat occupants. A total of 1179 tests were used, and the changes in their mass and stiffness versus their model year was quantified. Additionally, data from 439 dummies tested in rear seats of NHTSA's full frontal crashes were analyzed. Dummies were divided into 3 groups based on their reference injury criteria. Multiple regressions were performed with speed, stiffness, and mass as predicting variables for head, neck, and chest injury criteria. A significant increase in mass and stiffness over model year of vehicles was observed, for passenger cars as well as large platform vehicles. The result showed a significant correlation (P-value < .05) between the increase in stiffness of the vehicles and increase in head and chest injury criteria for all dummy sizes. These results explain that stiffness is a significant contributor to previously reported decreases in protection of rear seat occupants over model years of vehicles.

Sources of heterogeneity in studies of the BMI-mortality association.

PubMed

Peter, Raphael Simon; Nagel, Gabriele

2017-06-01

To date, the amount of heterogeneity among studies of the body mass index-mortality association attributable to differences in the age distribution and length of follow-up has not been quantified. Therefore, we wanted to quantify the amount of heterogeneity attributable to age and follow-up in results of studies on the body mass index-mortality relation. We used optima of the body mass index mortality association reported for 30 populations and performed meta-regression to estimate the amount of heterogeneity attributable to sex, ethnicity, mean age at baseline, percentage smokers, and length of follow-up. Ethnicity as single factor accounted for 36% (95% CI, 11-56%) of heterogeneity. Mean age and length of follow-up had an interactive effect and together accounted for 56% (95% CI, 24-74%) of the remaining heterogeneity. Sex did not significantly contribute to the heterogeneity, after controlling for ethnicity, age, and length of follow-up. A considerable amount of heterogeneity in studies of the body mass index-mortality association is attributable to ethnicity, age, and length of follow-up. Copyright © 2017 The Authors. Production and hosting by Elsevier B.V. All rights reserved.

On the spatial distributions of dense cores in Orion B

NASA Astrophysics Data System (ADS)

Parker, Richard J.

2018-05-01

We quantify the spatial distributions of dense cores in three spatially distinct areas of the Orion B star-forming region. For L1622, NGC 2068/NGC 2071, and NGC 2023/NGC 2024, we measure the amount of spatial substructure using the Q-parameter and find all three regions to be spatially substructured (Q < 0.8). We quantify the amount of mass segregation using ΛMSR and find that the most massive cores are mildly mass segregated in NGC 2068/NGC 2071 (ΛMSR ˜ 2), and very mass segregated in NGC 2023/NGC 2024 (Λ _MSR = 28^{+13}_{-10} for the four most massive cores). Whereas the most massive cores in L1622 are not in areas of relatively high surface density, or deeper gravitational potentials, the massive cores in NGC 2068/NGC 2071 and NGC 2023/NGC 2024 are significantly so. Given the low density (10 cores pc-2) and spatial substructure of cores in Orion B, the mass segregation cannot be dynamical. Our results are also inconsistent with simulations in which the most massive stars form via competitive accretion, and instead hint that magnetic fields may be important in influencing the primordial spatial distributions of gas and stars in star-forming regions.

COPS-GREAT: CO in ProtoStars with GREAT

NASA Astrophysics Data System (ADS)

Kristensen, Lars

2013-10-01

Low-mass embedded protostars drive strong bipolar jets, which shock the surrounding gas on 100-1000 AU scales and entrain colder gas in outflows on 10,000 AU and larger scales. The aim of this proposal is to analyze the transition between shocks and entrainment and to quantify the mass in each component. We plan to do this by observing the CO 13-12 line with GREAT in five sources. Outflows from young protostars are a major source of feedback on both protostellar and cloud scales. However, our understanding of how they entrain or impact the protostellar envelope is still in its infancy. High-J CO observations are required to analyze in detail the transition where the outflowing gas goes from being colder (T ~ 100 K) entrained outflowing gas to being directly excited by the shocks causing the entrainment. These observations will allow us to quantify the amount of currently shocked gas with respect to the entrained gas, as well as examine shock properties as a function of velocity, and thereby quantify the feedback from a protostar on its natal material.

COPS-GREAT2: CO in ProtoStars with GREAT

NASA Astrophysics Data System (ADS)

Yildiz, Umut

Low-mass embedded protostars drive strong bipolar jets, which shock the surrounding gas on 100-1000 AU scales and entrain colder gas in outflows on 10,000 AU and larger scales. The aim of this proposal is to analyze the transition between shocks and entrainment and to quantify the mass in each component. We plan to do this by observing the CO 11-10 line with GREAT in nine sources. Outflows from young protostars are a major source of feedback on both protostellar and cloud scales. However, our understanding of how they entrain or impact the protostellar envelope is still in its infancy. High-J CO observations are required to analyze in detail the transition where the outflowing gas goes from being colder (T 100 K) entrained outflowing gas to being directly excited by the shocks causing the entrainment. These observations will allow us to quantify the amount of currently shocked gas with respect to the entrained gas, as well as examine shock properties as a function of velocity, and thereby quantify the feedback from a protostar on its natal material.

On the Reproducibility of Label-Free Quantitative Cross-Linking/Mass Spectrometry

NASA Astrophysics Data System (ADS)

Müller, Fränze; Fischer, Lutz; Chen, Zhuo Angel; Auchynnikava, Tania; Rappsilber, Juri

2018-02-01

Quantitative cross-linking/mass spectrometry (QCLMS) is an emerging approach to study conformational changes of proteins and multi-subunit complexes. Distinguishing protein conformations requires reproducibly identifying and quantifying cross-linked peptides. Here we analyzed the variation between multiple cross-linking reactions using bis[sulfosuccinimidyl] suberate (BS3)-cross-linked human serum albumin (HSA) and evaluated how reproducible cross-linked peptides can be identified and quantified by LC-MS analysis. To make QCLMS accessible to a broader research community, we developed a workflow that integrates the established software tools MaxQuant for spectra preprocessing, Xi for cross-linked peptide identification, and finally Skyline for quantification (MS1 filtering). Out of the 221 unique residue pairs identified in our sample, 124 were subsequently quantified across 10 analyses with coefficient of variation (CV) values of 14% (injection replica) and 32% (reaction replica). Thus our results demonstrate that the reproducibility of QCLMS is in line with the reproducibility of general quantitative proteomics and we establish a robust workflow for MS1-based quantitation of cross-linked peptides.

Simultaneous quantification of reparixin and paclitaxel in plasma and urine using ultra performance liquid chromatography-tandem mass spectroscopy (UHPLC-MS/MS): Application to a preclinical pharmacokinetic study in rats.

PubMed

Malhi, Sarandeep; Stesco, Nicholas; Alrushaid, Samaa; Lakowski, Ted M; Davies, Neal M; Gu, Xiaochen

2017-03-01

A liquid chromatography-tandem mass spectroscopy (LC-MS/MS) assay was developed and validated to simultaneously quantify anticancer drugs reparixin and paclitaxel in this study. The compounds were extracted from plasma and urine samples by protein precipitation with acetone (supplemented with 0.1% formic acid). Chromatographic separation was achieved using a C18 column, and drug molecules were ionized using dual ion source electrospray and atmospheric pressure chemical ionization (DUIS: ESI-APCI). Reparixin and paclitaxel were quantified using negative and positive multiple reaction monitoring (MRM) mode, respectively. Stable isotope palcitaxel-D5 was used as the internal standard (IS). The assay was validated for specificity, recovery, carryover and sample stability under various storage conditions; it was also successfully applied to measure drug concentrations collected from a pharmacokinetic study in rats. The results confirmed that the assay was accurate and simple in quantifying both reparixin and paclitaxel in plasma and urine with minimal sample pretreatment. Copyright © 2016 Elsevier B.V. All rights reserved.

Method for detecting and correcting for isotope burn-in during long-term neutron dosimetry exposure

DOEpatents

Ruddy, Francis H.

1988-01-01

A method is described for detecting and correcting for isotope burn-in during-long term neutron dosimetry exposure. In one embodiment, duplicate pairs of solid state track recorder fissionable deposits are used, including a first, fissionable deposit of lower mass to quantify the number of fissions occuring during the exposure, and a second deposit of higher mass to quantify the number of atoms of for instance .sup.239 Pu by alpha counting. In a second embodiment, only one solid state track recorder fissionable deposit is used and the resulting higher track densities are counted with a scanning electron microscope. This method is also applicable to other burn-in interferences, e.g., .sup.233 U in .sup.232 Th or .sup.238 Pu in .sup.237 Np.

Calibration of the QCM/SAW Cascade Impactor for Measurement of Ozone

NASA Technical Reports Server (NTRS)

Williams, Cassandra K.; Peterson, C. B.; Morris, V. R.

1997-01-01

The Quartz Crystal Microbalance Surface Acoustic Wave (QCM/SAW) cascade impactor is an instrument designed to collect size-fractionated distributions of aerosols on a series of quartz crystals and employ SAW devices coated with chemical sensors for gas detection. We are calibrating the cascade impactor in our laboratory for future deployment for in-situ experiments to measure ozone. Experiments have been performed to characterize the QCM and SAW mass loading, saturation limits, mass frequency relationships, and sensitivity. The characteristics of mass loading, saturation limits, mass-frequency relationships, sensitivity, and the loss of ozone on different materials have been quantified.

Quantitative coronary angiography using image recovery techniques for background estimation in unsubtracted images

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wong, Jerry T.; Kamyar, Farzad; Molloi, Sabee

2007-10-15

Densitometry measurements have been performed previously using subtracted images. However, digital subtraction angiography (DSA) in coronary angiography is highly susceptible to misregistration artifacts due to the temporal separation of background and target images. Misregistration artifacts due to respiration and patient motion occur frequently, and organ motion is unavoidable. Quantitative densitometric techniques would be more clinically feasible if they could be implemented using unsubtracted images. The goal of this study is to evaluate image recovery techniques for densitometry measurements using unsubtracted images. A humanoid phantom and eight swine (25-35 kg) were used to evaluate the accuracy and precision of the followingmore » image recovery techniques: Local averaging (LA), morphological filtering (MF), linear interpolation (LI), and curvature-driven diffusion image inpainting (CDD). Images of iodinated vessel phantoms placed over the heart of the humanoid phantom or swine were acquired. In addition, coronary angiograms were obtained after power injections of a nonionic iodinated contrast solution in an in vivo swine study. Background signals were estimated and removed with LA, MF, LI, and CDD. Iodine masses in the vessel phantoms were quantified and compared to known amounts. Moreover, the total iodine in left anterior descending arteries was measured and compared with DSA measurements. In the humanoid phantom study, the average root mean square errors associated with quantifying iodine mass using LA and MF were approximately 6% and 9%, respectively. The corresponding average root mean square errors associated with quantifying iodine mass using LI and CDD were both approximately 3%. In the in vivo swine study, the root mean square errors associated with quantifying iodine in the vessel phantoms with LA and MF were approximately 5% and 12%, respectively. The corresponding average root mean square errors using LI and CDD were both 3%. The standard deviations in the differences between measured iodine mass in left anterior descending arteries using DSA and LA, MF, LI, or CDD were calculated. The standard deviations in the DSA-LA and DSA-MF differences (both {approx}21 mg) were approximately a factor of 3 greater than that of the DSA-LI and DSA-CDD differences (both {approx}7 mg). Local averaging and morphological filtering were considered inadequate for use in quantitative densitometry. Linear interpolation and curvature-driven diffusion image inpainting were found to be effective techniques for use with densitometry in quantifying iodine mass in vitro and in vivo. They can be used with unsubtracted images to estimate background anatomical signals and obtain accurate densitometry results. The high level of accuracy and precision in quantification associated with using LI and CDD suggests the potential of these techniques in applications where background mask images are difficult to obtain, such as lumen volume and blood flow quantification using coronary arteriography.« less

Quantification of online removal of refractory black carbon using laser-induced incandescence in the single particle soot photometer

DOE PAGES

Aiken, Allison C.; McMeeking, Gavin R.; Levin, Ezra J. T.; ...

2016-04-05

Refractory black carbon (rBC) is an aerosol that has important impacts on climate and human health. rBC is often mixed with other species, making it difficult to isolate and quantify its important effects on physical and optical properties of ambient aerosol. To solve this measurement challenge, a new method to remove rBC was developed using laser-induced incandescence (LII) by Levin et al. in 2014. Application of the method with the Single Particle Soot Photometer (SP2) is used to determine the effects of rBC on ice nucleating particles (INP). Here, we quantify the efficacy of the method in the laboratory usingmore » the rBC surrogate Aquadag. Polydisperse and mobility-selected samples (100–500 nm diameter, 0.44–36.05 fg), are quantified by a second SP2. Removal rates are reported by mass and number. For the mobility-selected samples, the average percentages removed by mass and number of the original size are 88.9 ± 18.6% and 87.3 ± 21.9%, respectively. Removal of Aquadag is efficient for particles >100 nm mass-equivalent diameter (d me), enabling application for microphysical studies. However, the removal of particles ≤100 nm d me is less efficient. Absorption and scattering measurements are reported to assess its use to isolate brown carbon (BrC) absorption. Scattering removal rates for the mobility-selected samples are >90% on average, yet absorption rates are 53% on average across all wavelengths. Therefore, application to isolate effects of microphysical properties determined by larger sizes is promising, but will be challenging for optical properties. Lastly, the results reported also have implications for other instruments employing internal LII, e.g., the Soot Particle Aerosol Mass Spectrometer (SP-AMS).« less

On the diversity and statistical properties of protostellar discs

NASA Astrophysics Data System (ADS)

Bate, Matthew R.

2018-04-01

We present results from the first population synthesis study of protostellar discs. We analyse the evolution and properties of a large sample of protostellar discs formed in a radiation hydrodynamical simulation of star cluster formation. Due to the chaotic nature of the star formation process, we find an enormous diversity of young protostellar discs, including misaligned discs, and discs whose orientations vary with time. Star-disc interactions truncate discs and produce multiple systems. Discs may be destroyed in dynamical encounters and/or through ram-pressure stripping, but reform by later gas accretion. We quantify the distributions of disc mass and radii for protostellar ages up to ≈105 yr. For low-mass protostars, disc masses tend to increase with both age and protostellar mass. Disc radii range from of order 10 to a few hundred au, grow in size on time-scales ≲ 104 yr, and are smaller around lower mass protostars. The radial surface density profiles of isolated protostellar discs are flatter than the minimum mass solar nebula model, typically scaling as Σ ∝ r-1. Disc to protostar mass ratios rarely exceed two, with a typical range of Md/M* = 0.1-1 to ages ≲ 104 yr and decreasing thereafter. We quantify the relative orientation angles of circumstellar discs and the orbit of bound pairs of protostars, finding a preference for alignment that strengths with decreasing separation. We also investigate how the orientations of the outer parts of discs differ from the protostellar and inner disc spins for isolated protostars and pairs.

Mass Spectrometry Approaches for Identification and Quantitation of Therapeutic Monoclonal Antibodies in the Clinical Laboratory.

PubMed

Ladwig, Paula M; Barnidge, David R; Willrich, Maria A V

2017-05-01

Therapeutic monoclonal antibodies (MAbs) are an important class of drugs used to treat diseases ranging from autoimmune disorders to B cell lymphomas to other rare conditions thought to be untreatable in the past. Many advances have been made in the characterization of immunoglobulins as a result of pharmaceutical companies investing in technologies that allow them to better understand MAbs during the development phase. Mass spectrometry is one of the new advancements utilized extensively by pharma to analyze MAbs and is now beginning to be applied in the clinical laboratory setting. The rise in the use of therapeutic MAbs has opened up new challenges for the development of assays for monitoring this class of drugs. MAbs are larger and more complex than typical small-molecule therapeutic drugs routinely analyzed by mass spectrometry. In addition, they must be quantified in samples that contain endogenous immunoglobulins with nearly identical structures. In contrast to an enzyme-linked immunosorbent assay (ELISA) for quantifying MAbs, mass spectrometry-based assays do not rely on MAb-specific reagents such as recombinant antigens and/or anti-idiotypic antibodies, and time for development is usually shorter. Furthermore, using molecular mass as a measurement tool provides increased specificity since it is a first-order principle unique to each MAb. This enables rapid quantification of MAbs and multiplexing. This review describes how mass spectrometry can become an important tool for clinical chemists and especially immunologists, who are starting to develop assays for MAbs in the clinical laboratory and are considering mass spectrometry as a versatile platform for the task. Copyright © 2017 Ladwig et al.

Suspended Sediment Dynamics in the Macrotidal Seine Estuary (France): 1. Numerical Modeling of Turbidity Maximum Dynamics

NASA Astrophysics Data System (ADS)

Grasso, F.; Verney, R.; Le Hir, P.; Thouvenin, B.; Schulz, E.; Kervella, Y.; Khojasteh Pour Fard, I.; Lemoine, J.-P.; Dumas, F.; Garnier, V.

2018-01-01

Tidal pumping, baroclinic circulation, and vertical mixing are known to be the main mechanisms responsible for the estuarine turbidity maximum (ETM) formation. However, the influence of hydro-meteorological conditions on ETM dynamics is still not properly grasped and requires further investigation to be quantified. Based on a realistic three-dimensional numerical model of the macrotidal Seine Estuary (France) that accounts for mud and sand transport processes, the objective of this study is to quantify the influence of the main forcing (river flow, tides, and waves) on the ETM location and mass changes. As expected, the ETM location is strongly modulated by semidiurnal tidal cycles and fortnightly time scales with a high sensitivity to river flow variations. The ETM mass is clearly driven by the tidal range, characteristic of the tidal pumping mechanism. However, it is not significantly affected by the river flow. Energetic wave conditions substantially influence the ETM mass by contributing up to 44% of the maximum mass observed during spring tides and by increasing the mass by a factor of 3 during mean tides compared to calm wave conditions. This means that neglecting wave forcing can result in significantly underestimating the ETM mass in estuarine environments. In addition, neap-to-spring phasing has a strong influence on ETM location and mass through a hysteresis response associated with the delay for tidal pumping and stratification to fully develop. Finally, simulations show that the uppermost limit of the Seine ETM location did not change notably during the last 35 years; however, the seaward limit migrated few kilometers upstream.

Quantifying the Economic and Cultural Biases of Social Media through Trending Topics

PubMed Central

Carrascosa, Juan Miguel; Cuevas, Ruben; Gonzalez, Roberto; Azcorra, Arturo; Garcia, David

2015-01-01

Online social media has recently irrupted as the last major venue for the propagation of news and cultural content, competing with traditional mass media and allowing citizens to access new sources of information. In this paper, we study collectively filtered news and popular content in Twitter, known as Trending Topics (TTs), to quantify the extent to which they show similar biases known for mass media. We use two datasets collected in 2013 and 2014, including more than 300.000 TTs from 62 countries. The existing patterns of leader-follower relationships among countries reveal systemic biases known for mass media: Countries concentrate their attention to small groups of other countries, generating a pattern of centralization in which TTs follow the gradient of wealth across countries. At the same time, we find subjective biases within language communities linked to the cultural similarity of countries, in which countries with closer cultures and shared languages tend to follow each other’s TTs. Moreover, using a novel methodology based on the Google News service, we study the influence of mass media in TTs for four countries. We find that roughly half of the TTs in Twitter overlap with news reported by mass media, and that the rest of TTs are more likely to spread internationally within Twitter. Our results confirm that online social media have the power to independently spread content beyond mass media, but at the same time social media content follows economic incentives and is subject to cultural factors and language barriers. PMID:26230656

Quantifying the Economic and Cultural Biases of Social Media through Trending Topics.

PubMed

Carrascosa, Juan Miguel; Cuevas, Ruben; Gonzalez, Roberto; Azcorra, Arturo; Garcia, David

2015-01-01

Online social media has recently irrupted as the last major venue for the propagation of news and cultural content, competing with traditional mass media and allowing citizens to access new sources of information. In this paper, we study collectively filtered news and popular content in Twitter, known as Trending Topics (TTs), to quantify the extent to which they show similar biases known for mass media. We use two datasets collected in 2013 and 2014, including more than 300.000 TTs from 62 countries. The existing patterns of leader-follower relationships among countries reveal systemic biases known for mass media: Countries concentrate their attention to small groups of other countries, generating a pattern of centralization in which TTs follow the gradient of wealth across countries. At the same time, we find subjective biases within language communities linked to the cultural similarity of countries, in which countries with closer cultures and shared languages tend to follow each other's TTs. Moreover, using a novel methodology based on the Google News service, we study the influence of mass media in TTs for four countries. We find that roughly half of the TTs in Twitter overlap with news reported by mass media, and that the rest of TTs are more likely to spread internationally within Twitter. Our results confirm that online social media have the power to independently spread content beyond mass media, but at the same time social media content follows economic incentives and is subject to cultural factors and language barriers.

Assessing TCE source bioremediation by geostatistical analysis of a flux fence.

PubMed

Cai, Zuansi; Wilson, Ryan D; Lerner, David N

2012-01-01

Mass discharge across transect planes is increasingly used as a metric for performance assessment of in situ groundwater remediation systems. Mass discharge estimates using concentrations measured in multilevel transects are often made by assuming a uniform flow field, and uncertainty contributions from spatial concentration and flow field variability are often overlooked. We extend our recently developed geostatistical approach to estimate mass discharge using transect data of concentration and hydraulic conductivity, so accounting for the spatial variability of both datasets. The magnitude and uncertainty of mass discharge were quantified by conditional simulation. An important benefit of the approach is that uncertainty is quantified as an integral part of the mass discharge estimate. We use this approach for performance assessment of a bioremediation experiment of a trichloroethene (TCE) source zone. Analyses of dissolved parent and daughter compounds demonstrated that the engineered bioremediation has elevated the degradation rate of TCE, resulting in a two-thirds reduction in the TCE mass discharge from the source zone. The biologically enhanced dissolution of TCE was not significant (~5%), and was less than expected. However, the discharges of the daughter products cis-1,2, dichloroethene (cDCE) and vinyl chloride (VC) increased, probably because of the rapid transformation of TCE from the source zone to the measurement transect. This suggests that enhancing the biodegradation of cDCE and VC will be crucial to successful engineered bioremediation of TCE source zones. © 2012, The Author(s). Ground Water © 2012, National Ground Water Association.

New Protocol Based on UHPLC-MS/MS for Quantitation of Metabolites in Xylose-Fermenting Yeasts

NASA Astrophysics Data System (ADS)

Campos, Christiane Gonçalves; Veras, Henrique César Teixeira; de Aquino Ribeiro, José Antônio; Costa, Patrícia Pinto Kalil Gonçalves; Araújo, Katiúscia Pereira; Rodrigues, Clenilson Martins; de Almeida, João Ricardo Moreira; Abdelnur, Patrícia Verardi

2017-12-01

Xylose fermentation is a bottleneck in second-generation ethanol production. As such, a comprehensive understanding of xylose metabolism in naturally xylose-fermenting yeasts is essential for prospection and construction of recombinant yeast strains. The objective of the current study was to establish a reliable metabolomics protocol for quantification of key metabolites of xylose catabolism pathways in yeast, and to apply this protocol to Spathaspora arborariae. Ultra-high performance liquid chromatography coupled to tandem mass spectrometry (UHPLC-MS/MS) was used to quantify metabolites, and afterwards, sample preparation was optimized to examine yeast intracellular metabolites. S. arborariae was cultivated using xylose as a carbon source under aerobic and oxygen-limited conditions. Ion pair chromatography (IPC) and hydrophilic interaction liquid chromatography-tandem mass spectrometry (HILIC-MS/MS) were shown to efficiently quantify 14 and 5 metabolites, respectively, in a more rapid chromatographic protocol than previously described. Thirteen and eleven metabolites were quantified in S. arborariae under aerobic and oxygen-limited conditions, respectively. This targeted metabolomics protocol is shown here to quantify a total of 19 metabolites, including sugars, phosphates, coenzymes, monosaccharides, and alcohols, from xylose catabolism pathways (glycolysis, pentose phosphate pathway, and tricarboxylic acid cycle) in yeast. Furthermore, to our knowledge, this is the first time that intracellular metabolites have been quantified in S. arborariae after xylose consumption. The results indicated that fine control of oxygen levels during fermentation is necessary to optimize ethanol production by S. arborariae. The protocol presented here may be applied to other yeast species and could support yeast genetic engineering to improve second generation ethanol production. [Figure not available: see fulltext.

Chapter One: Exposure Measurements.

EPA Science Inventory

Determining human exposure to suspended particualte concentrations requires measurements that quantify different particle properties in microenvironments where people live, work, and play. Particle mass, size, and chemical composition are important exposure variables, and these ...

CHAPTER ONE: EXPOSURE MEASUREMENTS.

EPA Science Inventory

Determining human exposure to suspended particualte concentrations requires measurements that quantify different particle properties in microenvironments where people live, work, and play. Particle mass, size, and chemical composition are important exposure variables, and these ...

Relationships of 35 lower limb muscles to height and body mass quantified using MRI.

PubMed

Handsfield, Geoffrey G; Meyer, Craig H; Hart, Joseph M; Abel, Mark F; Blemker, Silvia S

2014-02-07

Skeletal muscle is the most abundant tissue in the body and serves various physiological functions including the generation of movement and support. Whole body motor function requires adequate quantity, geometry, and distribution of muscle. This raises the question: how do muscles scale with subject size in order to achieve similar function across humans? While much of the current knowledge of human muscle architecture is based on cadaver dissection, modern medical imaging avoids limitations of old age, poor health, and limited subject pool, allowing for muscle architecture data to be obtained in vivo from healthy subjects ranging in size. The purpose of this study was to use novel fast-acquisition MRI to quantify volumes and lengths of 35 major lower limb muscles in 24 young, healthy subjects and to determine if muscle size correlates with bone geometry and subject parameters of mass and height. It was found that total lower limb muscle volume scales with mass (R(2)=0.85) and with the height-mass product (R(2)=0.92). Furthermore, individual muscle volumes scale with total muscle volume (median R(2)=0.66), with the height-mass product (median R(2)=0.61), and with mass (median R(2)=0.52). Muscle volume scales with bone volume (R(2)=0.75), and muscle length relative to bone length is conserved (median s.d.=2.1% of limb length). These relationships allow for an arbitrary subject's individual muscle volumes to be estimated from mass or mass and height while muscle lengths may be estimated from limb length. The dataset presented here can further be used as a normative standard to compare populations with musculoskeletal pathologies. © 2013 Published by Elsevier Ltd.

A Unified Picture of Mass Segregation in Globular Clusters

NASA Astrophysics Data System (ADS)

Watkins, Laura

2017-08-01

The sensitivity, stability and longevity of HST have opened up an exciting new parameter space: we now have velocity measurements, in the form of proper motions (PMs), for stars from the tip of the red giant branch to a few magnitudes below the main-sequence turn off for a large sample of globular clusters (GCs). For the very first time, we have the opportunity to measure both kinematic and spatial dependences on stellar mass in GCs.The formation and evolution histories of GCs are poorly understood, so too are their intermediate-mass black hole populations and binary fractions. However, the current structure and dynamical state of a GC is directly determined by its past history and its components, so by understanding the former we can gain insight into the latter. Quantifying variations in spatial structure for stars of different mass is extremely difficult with photometry alone as datasets are inhomogenous and incomplete. We require kinematic data for stars that span a range of stellar masses, combined with proper dynamical modelling. We now have the data in hand, but still lack the models needed to maximise the scientific potential of our HST datasets.Here, we propose to extend existing single-mass discrete dynamical-modelling tools to include kinematic and spatial variations with stellar mass, and verify the upgrades using mock data generated from N-body models. We will then apply the models to HST PM data and directly quantify energy equipartition and mass segregation in the GCs. The theoretical phase of the project is vital for the success of the subsequent data analysis, and will serve as a benchmark for future observational campaigns with HST, JWST and beyond.

Quantifying the effect of riming on snowfall using ground-based observations

NASA Astrophysics Data System (ADS)

Moisseev, Dmitri; von Lerber, Annakaisa; Tiira, Jussi

2017-04-01

Ground-based observations of ice particle size distribution and ensemble mean density are used to quantify the effect of riming on snowfall. The rime mass fraction is derived from these measurements by following the approach that is used in a single ice-phase category microphysical scheme proposed for the use in numerical weather prediction models. One of the characteristics of the proposed scheme is that the prefactor of a power law relation that links mass and size of ice particles is determined by the rime mass fraction, while the exponent does not change. To derive the rime mass fraction, a mass-dimensional relation representative of unrimed snow is also determined. To check the validity of the proposed retrieval method, the derived rime mass fraction is converted to the effective liquid water path that is compared to microwave radiometer observations. Since dual-polarization radar observations are often used to detect riming, the impact of riming on dual-polarization radar variables is studied for differential reflectivity measurements. It is shown that the relation between rime mass fraction and differential reflectivity is ambiguous, other factors such as change in median volume diameter need also be considered. Given the current interest on sensitivity of precipitation to aerosol pollution, which could inhibit riming, the importance of riming for surface snow accumulation is investigated. It is found that riming is responsible for 5% to 40% of snowfall mass. The study is based on data collected at the University of Helsinki field station in Hyytiälä during U.S. Department of Energy Biogenic Aerosols Effects on Clouds and Climate (BAECC) field campaign and the winter 2014/2015. In total 22 winter storms were analyzed, and detailed analysis of two events is presented to illustrate the study.

Mass selective separation applied to radioisotopes of cesium: Mass selective applied to radioisotopes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dion, Michael; Eiden, Greg; Farmer, Orville

2016-07-22

A developed technique that uses the intrinsic mass-based separation capability of a quadrupole mass spectrometer has been used to resolve spectral radiometric interference of two isotopes of the same element. In this work the starting sample was a combination of 137Cs and 134Cs and was (activity) dominated by 137Cs and this methodology separated and “implanted” 134Cs that was later quantified for spectral features and ac- tivity with traditional radiometric techniques. This work demonstrated a 134Cs/137Cs activity ratio enhancement of >4 orders of magnitude and complete removal of 137Cs spectral features from the implanted target mass (i.e., 134).

Dynamic analysis of CO₂ labeling and cell respiration using membrane-inlet mass spectrometry.

PubMed

Yang, Tae Hoon

2014-01-01

Here, we introduce a mass spectrometry-based analytical method and relevant technical details for dynamic cell respiration and CO2 labeling analysis. Such measurements can be utilized as additional information and constraints for model-based (13)C metabolic flux analysis. Dissolved dynamics of oxygen consumption and CO2 mass isotopomer evolution from (13)C-labeled tracer substrates through different cellular processes can be precisely measured on-line using a miniaturized reactor system equipped with a membrane-inlet mass spectrometer. The corresponding specific rates of physiologically relevant gases and CO2 mass isotopomers can be quantified within a short-term range based on the liquid-phase dynamics of dissolved fermentation gases.

Compact hydrogen/helium isotope mass spectrometer

DOEpatents

Funsten, Herbert O.; McComas, David J.; Scime, Earl E.

1996-01-01

The compact hydrogen and helium isotope mass spectrometer of the present invention combines low mass-resolution ion mass spectrometry and beam-foil interaction technology to unambiguously detect and quantify deuterium (D), tritium (T), hydrogen molecule (H.sub.2, HD, D.sub.2, HT, DT, and T.sub.2), .sup.3 He, and .sup.4 He concentrations and concentration variations. The spectrometer provides real-time, high sensitivity, and high accuracy measurements. Currently, no fieldable D or molecular speciation detectors exist. Furthermore, the present spectrometer has a significant advantage over traditional T detectors: no confusion of the measurements by other beta-emitters, and complete separation of atomic and molecular species of equivalent atomic mass (e.g., HD and .sup.3 He).

De-coupling seasonal changes in water content and dry matter to predict live conifer foliar moisture content

Treesearch

W. Matt Jolly; Ann M. Hadlow; Kathleen Huguet

2014-01-01

Live foliar moisture content (LFMC) significantly influences wildland fire behaviour. However, characterising variations in LFMC is difficult because both foliar mass and dry mass can change throughout the season. Here we quantify the seasonal changes in both plant water status and dry matter partitioning. We collected new and old foliar samples from Pinus contorta for...

Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring.

PubMed

Lange, Vinzenz; Malmström, Johan A; Didion, John; King, Nichole L; Johansson, Björn P; Schäfer, Juliane; Rameseder, Jonathan; Wong, Chee-Hong; Deutsch, Eric W; Brusniak, Mi-Youn; Bühlmann, Peter; Björck, Lars; Domon, Bruno; Aebersold, Ruedi

2008-08-01

In many studies, particularly in the field of systems biology, it is essential that identical protein sets are precisely quantified in multiple samples such as those representing differentially perturbed cell states. The high degree of reproducibility required for such experiments has not been achieved by classical mass spectrometry-based proteomics methods. In this study we describe the implementation of a targeted quantitative approach by which predetermined protein sets are first identified and subsequently quantified at high sensitivity reliably in multiple samples. This approach consists of three steps. First, the proteome is extensively mapped out by multidimensional fractionation and tandem mass spectrometry, and the data generated are assembled in the PeptideAtlas database. Second, based on this proteome map, peptides uniquely identifying the proteins of interest, proteotypic peptides, are selected, and multiple reaction monitoring (MRM) transitions are established and validated by MS2 spectrum acquisition. This process of peptide selection, transition selection, and validation is supported by a suite of software tools, TIQAM (Targeted Identification for Quantitative Analysis by MRM), described in this study. Third, the selected target protein set is quantified in multiple samples by MRM. Applying this approach we were able to reliably quantify low abundance virulence factors from cultures of the human pathogen Streptococcus pyogenes exposed to increasing amounts of plasma. The resulting quantitative protein patterns enabled us to clearly define the subset of virulence proteins that is regulated upon plasma exposure.

A single-run liquid chromatography mass spectrometry method to quantify neuroactive kynurenine pathway metabolites in rat plasma.

PubMed

Orsatti, Laura; Speziale, Roberto; Orsale, Maria Vittoria; Caretti, Fulvia; Veneziano, Maria; Zini, Matteo; Monteagudo, Edith; Lyons, Kathryn; Beconi, Maria; Chan, Kelvin; Herbst, Todd; Toledo-Sherman, Leticia; Munoz-Sanjuan, Ignacio; Bonelli, Fabio; Dominguez, Celia

2015-03-25

Neuroactive metabolites in the kynurenine pathway of tryptophan catabolism are associated with neurodegenerative disorders. Tryptophan is transported across the blood-brain barrier and converted via the kynurenine pathway to N-formyl-L-kynurenine, which is further degraded to L-kynurenine. This metabolite can then generate a group of metabolites called kynurenines, most of which have neuroactive properties. The association of tryptophan catabolic pathway alterations with various central nervous system (CNS) pathologies has raised interest in analytical methods to accurately quantify kynurenines in body fluids. We here describe a rapid and sensitive reverse-phase HPLC-MS/MS method to quantify L-kynurenine (KYN), kynurenic acid (KYNA), 3-hydroxy-L-kynurenine (3HK) and anthranilic acid (AA) in rat plasma. Our goal was to quantify these metabolites in a single run; given their different physico-chemical properties, major efforts were devoted to develop a chromatography suitable for all metabolites that involves plasma protein precipitation with acetonitrile followed by chromatographic separation by C18 RP chromatography, detected by electrospray mass spectrometry. Quantitation range was 0.098-100 ng/ml for 3HK, 9.8-20,000 ng/ml for KYN, 0.49-1000 ng/ml for KYNA and AA. The method was linear (r>0.9963) and validation parameters were within acceptance range (calibration standards and QC accuracy within ±30%). Copyright © 2015 Elsevier B.V. All rights reserved.

Noninvasive quantitative measurement of colloid transport in mesoscale porous media using time lapse fluorescence imaging.

PubMed

Bridge, Jonathan W; Banwart, Steven A; Heathwaite, A Louise

2006-10-01

We demonstrate noninvasive quantitative imaging of colloid and solute transport at millimeter to decimeter (meso-) scale. Ultraviolet (UV) excited fluorescent solute and colloid tracers were independently measured simultaneously during co-advection through saturated quartz sand. Pulse-input experiments were conducted at constant flow rates and ionic strengths 10(-3), 10(-2) and 10(-1) M NaCl. Tracers were 1.9 microm carboxylate latex microspheres and disodium fluorescein. Spatial moments analysis was used to quantify relative changes in mass distribution of the colloid and solute tracers over time. The solute advected through the sand at a constant velocity proportional to flow rate and was described well by a conservative transport model (CXTFIT). In unfavorable deposition conditions increasing ionic strength produced significant reduction in colloid center of mass transport velocity over time. Velocity trends correlated with the increasing fraction of colloid mass retained along the flowpath. Attachment efficiencies (defined by colloid filtration theory) calculated from nondestructive retained mass data were 0.013 +/- 0.03, 0.09 +/- 0.02, and 0.22 +/- 0.05 at 10(-3), 10(-2), and 10(-1) M ionic strength, respectively, which compared well with previously published data from breakthrough curves and destructive sampling. Mesoscale imaging of colloid mass dynamics can quantify key deposition and transport parameters based on noninvasive, nondestructive, spatially high-resolution data.

Numerical Relativity Simulations of Compact Binary Populations in Dense Stellar Environments

NASA Astrophysics Data System (ADS)

Glennon, Derek Ray; Huerta, Eliu; Allen, Gabrielle; Haas, Roland; Seidel, Edward; NCSA Gravity Group

2018-01-01

We present a catalog of numerical relativity simulations that describe binary black hole mergers on eccentric orbits. These simulations have been obtained with the open source, Einstein Toolkit numerical relativity software, using the Blue Waters supercomputer. We use this catalog to quantify observables, such as the mass and spin of black holes formed by binary black hole mergers, as a function of eccentricity. This study is the first of its kind in the literature to quantify these astrophysical observables for binary black hole mergers with mass-ratios q<6, and eccentricities e<0.2. This study is an important step in understanding the properties of eccentric binary black hole mergers, and informs the use of gravitational wave observations to confirm or rule out the existence of compact binary populations in dense stellar environments.

Estimating Regional Mass Balance of Himalayan Glaciers Using Hexagon Imagery: An Automated Approach

NASA Astrophysics Data System (ADS)

Maurer, J. M.; Rupper, S.

2013-12-01

Currently there is much uncertainty regarding the present and future state of Himalayan glaciers, which supply meltwater for river systems vital to more than 1.4 billion people living throughout Asia. Previous assessments of regional glacier mass balance in the Himalayas using various remote sensing and field-based methods give inconsistent results, and most assessments are over relatively short (e.g., single decade) timescales. This study aims to quantify multi-decadal changes in volume and extent of Himalayan glaciers through efficient use of the large database of declassified 1970-80s era Hexagon stereo imagery. Automation of the DEM extraction process provides an effective workflow for many images to be processed and glacier elevation changes quantified with minimal user input. The tedious procedure of manual ground control point selection necessary for block-bundle adjustment (as ephemeral data is not available for the declassified images) is automated using the Maximally Stable Extremal Regions algorithm, which matches image elements between raw Hexagon images and georeferenced Landsat 15 meter panchromatic images. Additional automated Hexagon DEM processing, co-registration, and bias correction allow for direct comparison with modern ASTER and SRTM elevation data, thus quantifying glacier elevation and area changes over several decades across largely inaccessible mountainous regions. As consistent methodology is used for all glaciers, results will likely reveal significant spatial and temporal patterns in regional ice mass balance. Ultimately, these findings could have important implications for future water resource management in light of environmental change.

Improving the sweeping efficiency of permanganate into low permeable zones to treat TCE: experimental results and model development.

PubMed

Chokejaroenrat, Chanat; Kananizadeh, Negin; Sakulthaew, Chainarong; Comfort, Steve; Li, Yusong

2013-11-19

The residual buildup and treatment of dissolved contaminants in low permeable zones (LPZs) is a particularly challenging issue for injection-based remedial treatments. Our objective was to improve the sweeping efficiency of permanganate into LPZs to treat dissolved-phase TCE. This was accomplished by conducting transport experiments that quantified the ability of xanthan-MnO4(-) solutions to penetrate and cover (i.e., sweep) an LPZ that was surrounded by transmissive sands. By incorporating the non-Newtonian fluid xanthan with MnO4(-), penetration of MnO4(-) into the LPZ improved dramatically and sweeping efficiency reached 100% in fewer pore volumes. To quantify how xanthan improved TCE removal, we spiked the LPZ and surrounding sands with (14)C-lableled TCE and used a multistep flooding procedure that quantified the mass of (14)C-TCE oxidized and bypassed during treatment. Results showed that TCE mass removal was 1.4 times greater in experiments where xanthan was employed. Combining xanthan with MnO4(-) also reduced the mass of TCE in the LPZ that was potentially available for rebound. By coupling a multiple species reactive transport model with the Brinkman equation for non-Newtonian flow, the simulated amount of (14)C-TCE oxidized during transport matched experimental results. These observations support the use of xanthan as a means of enhancing MnO4(-) delivery into LPZs for the treatment of dissolved-phase TCE.

Quantifying ice cliff contribution to debris-covered glacier mass balance from multiple sensors

NASA Astrophysics Data System (ADS)

Brun, Fanny; Wagnon, Patrick; Berthier, Etienne; Kraaijenbrink, Philip; Immerzeel, Walter; Shea, Joseph; Vincent, Christian

2017-04-01

Ice cliffs on debris-covered glaciers have been recognized as a hot spot for glacier melt. Ice cliffs are steep (even sometimes overhanging) and fast evolving surface features, which make them challenging to monitor. We surveyed the topography of Changri Nup Glacier (Nepalese Himalayas, Everest region) in November 2015 and 2016 using multiple sensors: terrestrial photogrammetry, Unmanned Aerial Vehicle (UAV) photogrammetry, Pléiades stereo images and ASTER stereo images. We derived 3D point clouds and digital elevation models (DEMs) following a Structure-from-Motion (SfM) workflow for the first two sets of data to monitor surface elevation changes and calculate the associated volume loss. We derived only DEMs for the two last data sets. The derived DEMs had resolutions ranging from < 5 cm to 30 m. The derived point clouds and DEMs are used to quantify the ice melt of the cliffs at different scales. The very high resolution SfM point clouds, together with the surface velocity field, will be used to calculate the volume losses of 14 individual cliffs, depending on their size, aspect or the presence of supra glacial lake. Then we will extend this analysis to the whole glacier to quantify the contribution of ice cliff melt to the overall glacier mass balance, calculated with the UAV and Pléiades DEMs. This research will provide important tools to evaluate the role of ice cliffs in regional mass loss.

LC-IMS-MS Feature Finder. Detecting Multidimensional Liquid Chromatography, Ion Mobility, and Mass Spectrometry Features in Complex Datasets

DOE Office of Scientific and Technical Information (OSTI.GOV)

Crowell, Kevin L.; Slysz, Gordon W.; Baker, Erin Shammel

2013-09-05

We introduce a command line software application LC-IMS-MS Feature Finder that searches for molecular ion signatures in multidimensional liquid chromatography-ion mobility spectrometry-mass spectrometry (LC-IMS-MS) data by clustering deisotoped peaks with similar monoisotopic mass, charge state, LC elution time, and ion mobility drift time values. The software application includes an algorithm for detecting and quantifying co-eluting chemical species, including species that exist in multiple conformations that may have been separated in the IMS dimension.

Liquid Chromatography Mass Spectrometry-Based Proteomics: Biological and Technological Aspects

DOE Office of Scientific and Technical Information (OSTI.GOV)

Karpievitch, Yuliya V.; Polpitiya, Ashoka D.; Anderson, Gordon A.

2010-12-01

Mass spectrometry-based proteomics has become the tool of choice for identifying and quantifying the proteome of an organism. Though recent years have seen a tremendous improvement in instrument performance and the computational tools used, significant challenges remain, and there are many opportunities for statisticians to make important contributions. In the most widely used "bottom-up" approach to proteomics, complex mixtures of proteins are first subjected to enzymatic cleavage, the resulting peptide products are separated based on chemical or physical properties and analyzed using a mass spectrometer. The two fundamental challenges in the analysis of bottom-up MS-based proteomics are: (1) Identifying themore » proteins that are present in a sample, and (2) Quantifying the abundance levels of the identified proteins. Both of these challenges require knowledge of the biological and technological context that gives rise to observed data, as well as the application of sound statistical principles for estimation and inference. We present an overview of bottom-up proteomics and outline the key statistical issues that arise in protein identification and quantification.« less

Liquid chromatography-diode array detection-mass spectrometry for compositional analysis of low molecular weight heparins.

PubMed

Wang, Zhangjie; Li, Daoyuan; Sun, Xiaojun; Bai, Xue; Jin, Lan; Chi, Lianli

2014-04-15

Low molecular weight heparins (LMWHs) are important artificial preparations from heparin polysaccharide and are widely used as anticoagulant drugs. To analyze the structure and composition of LMWHs, identification and quantitation of their natural and modified building blocks are indispensable. We have established a novel reversed-phase high-performance liquid chromatography-diode array detection-electrospray ionization-mass spectrometry approach for compositional analysis of LMWHs. After being exhaustively digested and labeled with 2-aminoacridone, the structural motifs constructing LMWHs, including 17 components from dalteparin and 15 components from enoxaparin, were well separated, identified, and quantified. Besides the eight natural heparin disaccharides, many characteristic structures from dalteparin and enoxaparin, such as modified structures from the reducing end and nonreducing end, 3-O-sulfated tetrasaccharides, and trisaccharides, have been unambiguously identified based on their retention time and mass spectra. Compared with the traditional heparin compositional analysis methods, the approach described here is not only robust but also comprehensive because it is capable of identifying and quantifying nearly all components from lyase digests of LMWHs. Copyright © 2014 Elsevier Inc. All rights reserved.

Characteristic Structure of Star-forming Clouds

NASA Astrophysics Data System (ADS)

Myers, Philip C.

2015-06-01

This paper presents a new method to diagnose the star-forming potential of a molecular cloud region from the probability density function of its column density (N-pdf). This method provides expressions for the column density and mass profiles of a symmetric filament having the same N-pdf as a filamentary region. The central concentration of this characteristic filament can distinguish regions and can quantify their fertility for star formation. Profiles are calculated for N-pdfs which are pure lognormal, pure power law, or a combination. In relation to models of singular polytropic cylinders, characteristic filaments can be unbound, bound, or collapsing depending on their central concentration. Such filamentary models of the dynamical state of N-pdf gas are more relevant to star-forming regions than are spherical collapse models. The star formation fertility of a bound or collapsing filament is quantified by its mean mass accretion rate when in radial free fall. For a given mass per length, the fertility increases with the filament mean column density and with its initial concentration. In selected regions the fertility of their characteristic filaments increases with the level of star formation.

Mendelian randomisation in type 2 diabetes and coronary artery disease.

PubMed

Frayling, Timothy M; Stoneman, Charli E

2018-06-20

Type 2 diabetes, coronary artery disease and hypertension are associated with anthropometric and biomarker traits, including waist-to-hip-ratio, body mass index and altered glucose and insulin levels. Clinical trials, for example of weight-loss interventions, show these factors are causal, but lifelong impact of subtle changes in body mass index and body fat distribution are less clear. The use of human genetics can quantify the causal effects of long-term exposure to subtle changes of modifiable risk factors. Mendelian randomisation (MR) uses human genetic variants associated with the risk factor to quantify the relationship between risk factor and disease outcome. The last two years have seen an increase in the number of MR studies investigating the relationship between anthropometric traits and metabolic diseases. This review provides an overview of these recent MR studies in relation to type 2 diabetes, coronary artery disease and hypertension. MR provides evidence for causal associations of waist-to-hip-ratio, body mass index and altered glucose levels with type 2 diabetes, coronary artery disease and hypertension. Crown Copyright © 2018. Published by Elsevier Ltd. All rights reserved.

Determination of polycyclic aromatic hydrocarbons with molecular weight 300 and 302 in environmental-matrix standard reference materials by gas chromatography/mass spectrometry.

PubMed

Schubert, Patricia; Schantz, Michele M; Sander, Lane C; Wise, Stephen A

2003-01-15

An analytical approach based on gas chromatography/ mass spectrometry (GC/MS) is presented for the measurement of polycyclic aromatic hydrocarbons with molecular weight (MW) 300 and 302 in environmental samples. Three different GC stationary phases [5% and 50% phenyl methylpolysiloxane and dimethyl (50% liquid crystalline) polysiloxane] were compared, and retention indexes (RI) are given for 23 individual MW 302 isomers. Identification of MW 300 and 302 isomers in four environmental-matrix Standard Reference Materials (SRMs) (SRM 1597, coal tar extract; SRM 1648 and SRM 1649a, air particulate matter; and SRM 1941, marine sediment) was based on the comparison of RI data and mass spectra from authentic standards. Dibenzo[a,l]pyrene, which is of considerable interest because of its high carcinogenicity, was identified and quantified in the four environmental-matrix SRMs. A total of 23 isomers of MW 302 and four isomers of MW 300 were quantified in four different environmental-matrix SRMs, and the results are compared to previously reported results based on liquid chromatography with fluorescence detection.

Handheld Fluorescence Resonance Energy Transfer (FRET)-Aptamer Sensor for Bone Markers

NASA Technical Reports Server (NTRS)

Bruno, John G.

2015-01-01

Astronauts lose significant bone mass during lengthy space flights. NASA wishes to monitor this bone loss in order to develop nutritional and exercise countermeasures. Operational Technologies Corporation (OpTech) has developed a handheld device that quantifies bone loss in a spacecraft environment. The innovation works by adding fluorescent dyes and quenchers to aptamers to enable pushbutton, one-step bind-and-detect FRET assays that can be freeze-dried, rehydrated with body fluids, and used to quantify bone loss.

Use of CT imaging to examine the coarse roots, rhizomes, and peat associated with creek bank Spartina alterniflora in fertilized and control creeks in Plum Island (MA)

EPA Science Inventory

We used computer-aided tomography (CT) to quantify the wet mass, abundance, and diameter of coarse roots and rhizomes as well as the wet mass and particle density of marsh peat in 7-year fertilized and control creeks in Plum Island (MA). In shallow soils (0 – 10 cm) and at dep...

Quantitative interaction proteomics using mass spectrometry.

PubMed

Wepf, Alexander; Glatter, Timo; Schmidt, Alexander; Aebersold, Ruedi; Gstaiger, Matthias

2009-03-01

We present a mass spectrometry-based strategy for the absolute quantification of protein complex components isolated through affinity purification. We quantified bait proteins via isotope-labeled reference peptides corresponding to an affinity tag sequence and prey proteins by label-free correlational quantification using the precursor ion signal intensities of proteotypic peptides generated in reciprocal purifications. We used this method to quantitatively analyze interaction stoichiometries in the human protein phosphatase 2A network.

Recommended Mass Spectrometry-Based Strategies to Identify Ricin-Containing Samples.

PubMed

Kalb, Suzanne R; Schieltz, David M; Becher, François; Astot, Crister; Fredriksson, Sten-Åke; Barr, John R

2015-11-25

Ricin is a protein toxin produced by the castor bean plant (Ricinus communis) together with a related protein known as R. communis agglutinin (RCA120). Mass spectrometric (MS) assays have the capacity to unambiguously identify ricin and to detect ricin's activity in samples with complex matrices. These qualitative and quantitative assays enable detection and differentiation of ricin from the less toxic RCA120 through determination of the amino acid sequence of the protein in question, and active ricin can be monitored by MS as the release of adenine from the depurination of a nucleic acid substrate. In this work, we describe the application of MS-based methods to detect, differentiate and quantify ricin and RCA120 in nine blinded samples supplied as part of the EQuATox proficiency test. Overall, MS-based assays successfully identified all samples containing ricin or RCA120 with the exception of the sample spiked with the lowest concentration (0.414 ng/mL). In fact, mass spectrometry was the most successful method for differentiation of ricin and RCA120 based on amino acid determination. Mass spectrometric methods were also successful at ranking the functional activities of the samples, successfully yielding semi-quantitative results. These results indicate that MS-based assays are excellent techniques to detect, differentiate, and quantify ricin and RCA120 in complex matrices.

Dissolved oxygen transfer to sediments by sweep and eject motions in aquatic environments

USGS Publications Warehouse

O'Connor, B.L.; Hondzo, Miki

2008-01-01

Dissolved oxygen (DO) concentrations were quantified near the sediment-water interface to evaluate DO transfer to sediments in a laboratory recirculating flume and open channel under varying fluid-flow conditions. DO concentration fluctuations were observed within the diffusive sublayer, as defined by the time-averaged DO concentration gradient near the sediment-water interface. Evaluation of the DO concentration fluctuations along with detailed fluid-flow characterizations were used to quantify quasi-periodic sweep and eject motions (bursting events) near the sediments. Bursting events dominated the Reynolds shear stresses responsible for momentum and mass fluctuations near the sediment bed. Two independent methods for detecting bursting events using DO concentration and velocity data produced consistent results. The average time between bursting events was scaled with wall variables and was incorporated into a similarity model to describe the dimensionless mass transfer coefficient (Sherwood number, Sh) in terms of the Reynolds number, Re, and Schmidt number, Sc, which described transport in the flow. The scaling of bursting events was employed with the similarity model to quantify DO transfer to sediments and results showed a high degree of agreement with experimental data. ?? 2008, by the American Society of Limnology and Oceanography, Inc.

From radioimmunoassay to mass spectrometry: a new method to quantify orexin-A (hypocretin-1) in cerebrospinal fluid

PubMed Central

Hirtz, Christophe; Vialaret, Jérôme; Gabelle, Audrey; Nowak, Nora; Dauvilliers, Yves; Lehmann, Sylvain

2016-01-01

I125 radioimmunoassay (RIA) is currently the standard technique for quantifying cerebrospinal fluid (CSF) orexin-A/hypocretin-1, a biomarker used to diagnose narcolepsy type 1. However, orexin-A RIA is liable to undergo cross-reactions with matrix constituents generating interference, high variability between batches, low precision and accuracy, and requires special radioactivity precautions. Here we developed the first quantitative mass spectrometry assay of orexin-A based on a multiple reaction monitoring (MRM) approach. This method was tested in keeping with the Clinical and Laboratory Standards Institute (CLSI) guidelines and its clinical relevance was confirmed by comparing patients with narcolepsy type 1 versus patients with other neurological conditions. The results obtained using MRM and RIA methods were highly correlated, and Bland–Altman analysis established their interchangeability. However, the MRM values had a wider distribution and were 2.5 time lower than the RIA findings. In conclusion, this method of assay provides a useful alternative to RIA to quantify orexin-A, and may well replace it not only in narcolepsy type 1, but also in the increasing number of pathologies in which the quantification of this analyte is relevant. PMID:27165941

Body Mass Index (BMI) and All-Cause Mortality Pooling Project

Cancer.gov

The BMI and All-Cause Mortality Pooling Project quantified the risk associated with being overweight and the extent to which the relationship between BMI and all-cause mortality varies by certain factors.

The upper bound on the lowest mass halo

NASA Astrophysics Data System (ADS)

Jethwa, P.; Erkal, D.; Belokurov, V.

2018-01-01

We explore the connection between galaxies and dark matter haloes in the Milky Way (MW) and quantify the implications on properties of the dark matter particle and the phenomenology of low-mass galaxy formation. This is done through a probabilistic comparison of the luminosity function of MW dwarf satellite galaxies to models based on two suites of zoom-in simulations. One suite is dark-matter-only, while the other includes a disc component, therefore we can quantify the effect of the MW's baryonic disc on our results. We apply numerous stellar-mass-halo-mass (SMHM) relations allowing for multiple complexities: scatter, a characteristic break scale, and subhaloes which host no galaxy. In contrast to previous works, we push the model/data comparison to the faintest dwarfs by modelling observational incompleteness, allowing us to draw three new conclusions. First, we constrain the SMHM relation for 102 < M*/ M⊙ < 108 galaxies, allowing us to bound the peak halo mass of the faintest MW satellite to Mvir > 2.4 × 108 M⊙ (1σ). Secondly, by translating to a warm dark matter (WDM) cosmology, we bound the thermal relic mass mWDM > 2.9 keV at 95 per cent confidence, on a par with recent constraints from the Lyman-α forest. Lastly, we find that the observed number of ultra-faint MW dwarfs is in tension with the theoretical prediction that reionization prevents galaxy formation in almost all 108 M⊙ haloes. This can be tested with the next generation of deep imaging surveys. To this end, we predict the likely number of detectable satellite galaxies in the Subaru/Hyper Suprime-Cam survey and the Large Synoptic Survey Telescope. Confronting these predictions with future observations will be amongst our strongest tests of WDM and the effect reionization on low-mass systems.

Rapid total volatile organic carbon quantification from microbial fermentation using a platinum catalyst and proton transfer reaction-mass spectrometry.

PubMed

Schoen, Heidi R; Peyton, Brent M; Knighton, W Berk

2016-12-01

A novel analytical system was developed to rapidly and accurately quantify total volatile organic compound (VOC) production from microbial reactor systems using a platinum catalyst and a sensitive CO 2 detector. This system allows nearly instantaneous determination of total VOC production by utilizing a platinum catalyst to completely and quantitatively oxidize headspace VOCs to CO 2 in coordination with a CO 2 detector. Measurement of respiratory CO 2 by bypassing the catalyst allowed the total VOC content to be determined from the difference in the two signals. To the best of our knowledge, this is the first instance of a platinum catalyst and CO 2 detector being used to quantify the total VOCs produced by a complex bioreactor system. Continuous recording of these CO 2 data provided a record of respiration and total VOC production throughout the experiments. Proton transfer reaction-mass spectrometry (PTR-MS) was used to identify and quantify major VOCs. The sum of the individual compounds measured by PTR-MS can be compared to the total VOCs quantified by the platinum catalyst to identify potential differences in detection, identification and calibration. PTR-MS measurements accounted on average for 94 % of the total VOC carbon detected by the platinum catalyst and CO 2 detector. In a model system, a VOC producing endophytic fungus Nodulisporium isolate TI-13 was grown in a solid state reactor utilizing the agricultural byproduct beet pulp as a substrate. Temporal changes in production of major volatile compounds (ethanol, methanol, acetaldehyde, terpenes, and terpenoids) were quantified by PTR-MS and compared to the total VOC measurements taken with the platinum catalyst and CO 2 detector. This analytical system provided fast, consistent data for evaluating VOC production in the nonhomogeneous solid state reactor system.

Influence of different production strategies on the stability of color, oxygen consumption and metmyoglobin reducing activity of meat from Ningxia Tan sheep.

PubMed

Gao, Xiaoguang; Wang, Zhenyu; Miao, Jing; Xie, Li; Dai, Yan; Li, Xingmin; Chen, Yong; Luo, Hailing; Dai, Ruitong

2014-02-01

Fifty male Ningxia Tan sheep were randomly divided into five groups (10 per group). Different feeding strategies were applied to each group for 120 days prior to slaughter. The sheep belong to five groups were pastured for 0 h (feedlot-fed), 2h, 4h, 8h, 12h per day on a natural grazing ground, respectively. M. semitendinosus muscle from Tan sheep was obtained after slaughter. Instrumental color, pH values, oxygen consumption rate, metmyoglobin reducing activity and relative metmyoglobin percentages were analyzed after 1, 3, 5, 7 and 9 days of refrigerated storage. Long-term daily grazing and herbage-based diet were conducive to maintain a lower oxygen consumption rate, higher metmyoglobin reducing activity and lower metmyoglobin accumulation. The combination of pasture-fed and feedlot-fed was conducive to weight gain, and at the same time, increased the color stability of the meat from Ningxia Tan sheep. © 2013.

Application of self-organizing maps for PCDD/F pattern recognition of environmental and biological samples to evaluate the impact of a hazardous waste incinerator.

PubMed

Mari, Montse; Nadal, Martí; Schuhmacher, Marta; Domingo, José L

2010-04-15

Kohonen's self-organizing maps (SOM) is one of the most popular artificial neural network models. In this study, SOM were used to assess the potential relationships between polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs) congener profiles in environmental (soil, herbage, and ambient air) and biological (plasma, adipose tissue, and breast milk) samples, and the emissions of a hazardous waste incinerator (HWI) in Spain. The visual examination of PCDD/F congener profiles of most environmental and biological samples did not allow finding out any differences between monitors. However, the global SOM analysis of environmental and biological samples showed that the weight of the PCDD/F stack emissions of the HWI on the environmental burden and on the exposure of the individuals living in the surroundings was not significant in relation to the background levels. The results confirmed the small influence of the HWI emissions of PCDD/Fs on the environment and the population living in the neighborhood.

Measurement of emission and deposition patterns of ammonia from urine in grass swards

NASA Astrophysics Data System (ADS)

Ross, C. A.; Jarvis, S. C.

Currently, legislation is being considered to reduce NH3 emissions in the UK. The major sources of NH3 and their relative contributions are well known, however, the processes that control the rates of emission are still poorly defined. A series of wind-tunnel experiments has been carried out to determine the effects of various management practices on NH3 losses. The tunnels were modified to enable NH3 emission and subsequent deposition to the adjacent swards in the field to be measured. The wind-tunnels were used to examine the effects of herbage length, cutting and N status on rates of NH3 fluxes, which together with the prevailing environmental conditions affected the rates of NH3 emission and deposition. Results showed that between 20 and 60% of the NH3 emitted was deposited within 2 m. Compensation points of between 1.0 and 2.3 μg m-3 were calculated for the grass sward.

Root uptake of 137Cs by natural and semi-natural grasses as a function of texture and moisture of soils.

PubMed

Grytsyuk, N; Arapis, G; Davydchuk, V

2006-01-01

This work studies the dependence of 137Cs root uptake on the structure of landscape, especially on texture and moisture of soils, under natural conditions, on abandoned radiopolluted lands in Northern Ukraine. Researches were carried out on a wide range of landscape conditions, at various levels of 137Cs contamination (from 20 up to 5000 kBqm(-2)), with different types of soils (approx. 20 soil varieties), which differ in texture, granulometric composition, degrees of gleyization and water regime, and anthropogenic transformation. The results showed that transfer factor (TF) values of 137Cs differ 50 times for the natural grassy coenoses and 8 times for the semi-natural ones. The lowest 137Cs TF values were measured in the herbages of dry meadows at automorphous loamy soils, while the highest were observed in wetland meadows at organic soils. Finally, the correlation between 137Cs TF values and granulometric composition of soil was determined for both automorphic and hydromorphic mineral soils.

Estimating total standing herbaceous biomass production with LANDSAT MSS digital data

NASA Technical Reports Server (NTRS)

Richardson, A. J.; Everitt, J. H.; Wiegand, C. L. (Principal Investigator)

1982-01-01

Rangeland biomass data were correlated with spectral vegetation indices, derived from LANDSAT MSS data. LANDSAT data from five range and three other land use sites in Willacv and Cameron Counties were collected on October 17 and December 10, 1975, and on July 31 and September 23, 1976. The overall linear correlation of total standing herbaceous biomass with the LANDSAT derived perpendicular vegetation index was highly significant (r = 0.90**) for these four dates. The standard error of estimate was 722 kg/ha. Biomass data were recorded for two of these range sites for 8 months (March through October) during the 1976 growing season. Standing green biomass accounted for most of the increase in herbage, starting in June and ending about September and October. These results indicate that satellite data may be useful for the estimation of total standing herbaceous biomass production that could aid range managers in assessing range condition and animal carrying capacities of large and inaccessible range holdings.

Heavy metals in livers and kidneys of goats in Alabama

DOE Office of Scientific and Technical Information (OSTI.GOV)

Khan, A.T.; Diffay, B.C.; Datiri, B.C.

1995-10-01

The popularity of goat farming is increasing in the southeastern region of the United States. Baseline values of Hg, Pb, and Cd are not available in goat tissues in the United States. These values are needed when monitoring food for heavy metal contamination which may be associated with urbanization and industrialization. Due to human activities or anthropogenic sources of metals in the environment, high concentrations of these metals have been observed in herbage and animal tissues. It has also been reported that toxic heavy metals are concentrated mostly in kidneys and livers of animals. The risk of exposure of humansmore » to heavy metals contained in edible organs of animals has received widespread concern. The objectives of this study were to (i) measure the levels of Hg,Pb, and Cd in livers and kidneys of goats; and (ii) determine whether accumulation of these metals is related to age and/or sex. 20 refs., 3 tabs.« less

Mass discharge estimation from contaminated sites: Multi-model solutions for assessment of conceptual uncertainty

NASA Astrophysics Data System (ADS)

Thomsen, N. I.; Troldborg, M.; McKnight, U. S.; Binning, P. J.; Bjerg, P. L.

2012-04-01

Mass discharge estimates are increasingly being used in the management of contaminated sites. Such estimates have proven useful for supporting decisions related to the prioritization of contaminated sites in a groundwater catchment. Potential management options can be categorised as follows: (1) leave as is, (2) clean up, or (3) further investigation needed. However, mass discharge estimates are often very uncertain, which may hamper the management decisions. If option 1 is incorrectly chosen soil and water quality will decrease, threatening or destroying drinking water resources. The risk of choosing option 2 is to spend money on remediating a site that does not pose a problem. Choosing option 3 will often be safest, but may not be the optimal economic solution. Quantification of the uncertainty in mass discharge estimates can therefore greatly improve the foundation for selecting the appropriate management option. The uncertainty of mass discharge estimates depends greatly on the extent of the site characterization. A good approach for uncertainty estimation will be flexible with respect to the investigation level, and account for both parameter and conceptual model uncertainty. We propose a method for quantifying the uncertainty of dynamic mass discharge estimates from contaminant point sources on the local scale. The method considers both parameter and conceptual uncertainty through a multi-model approach. The multi-model approach evaluates multiple conceptual models for the same site. The different conceptual models consider different source characterizations and hydrogeological descriptions. The idea is to include a set of essentially different conceptual models where each model is believed to be realistic representation of the given site, based on the current level of information. Parameter uncertainty is quantified using Monte Carlo simulations. For each conceptual model we calculate a transient mass discharge estimate with uncertainty bounds resulting from the parametric uncertainty. To quantify the conceptual uncertainty from a given site, we combine the outputs from the different conceptual models using Bayesian model averaging. The weight for each model is obtained by integrating available data and expert knowledge using Bayesian belief networks. The multi-model approach is applied to a contaminated site. At the site a DNAPL (dense non aqueous phase liquid) spill consisting of PCE (perchloroethylene) has contaminated a fractured clay till aquitard overlaying a limestone aquifer. The exact shape and nature of the source is unknown and so is the importance of transport in the fractures. The result of the multi-model approach is a visual representation of the uncertainty of the mass discharge estimates for the site which can be used to support the management options.

Subhalo demographics in the Illustris simulation: effects of baryons and halo-to-halo variation

NASA Astrophysics Data System (ADS)

Chua, Kun Ting Eddie; Pillepich, Annalisa; Rodriguez-Gomez, Vicente; Vogelsberger, Mark; Bird, Simeon; Hernquist, Lars

2017-12-01

We study the abundance of subhaloes in the hydrodynamical cosmological simulation Illustris, which includes both baryons and dark matter in a cold dark matter volume 106.5 Mpc a side. We compare Illustris to its dark-matter only (DMO) analogue, Illustris-Dark and quantify the effects of baryonic processes on the demographics of subhaloes in the host mass range 1011-3 × 1014 M⊙. We focus on both the evolved (z = 0) subhalo cumulative mass functions (SHMF) and the statistics of subhaloes ever accreted, i.e. infall SHMF. We quantify the variance in subhalo abundance at fixed host mass and investigate the physical reasons responsible for such scatter. We find that in Illustris, baryonic physics impacts both the infall and z = 0 subhalo abundance by tilting the DMO function and suppressing the abundance of low-mass subhaloes. The breaking of self-similarity in the subhalo abundance at z = 0 is enhanced by the inclusion of baryonic physics. The non-monotonic alteration of the evolved subhalo abundances can be explained by the modification of the concentration-mass relation of Illustris hosts compared to Illustris-Dark. Interestingly, the baryonic implementation in Illustris does not lead to an increase in the halo-to-halo variation compared to Illustris-Dark. In both cases, the normalized intrinsic scatter today is larger for Milky Way-like haloes than for cluster-sized objects. For Milky Way-like haloes, it increases from about eight per cent at infall to about 25 per cent at the current epoch. In both runs, haloes of fixed mass formed later host more subhaloes than early formers.

Modelling the carbon AGB star R Sculptoris. Constraining the dust properties in the detached shell based on far-infrared and sub-millimeter observations

NASA Astrophysics Data System (ADS)

Brunner, M.; Maercker, M.; Mecina, M.; Khouri, T.; Kerschbaum, F.

2018-06-01

Context. On the asymptotic giant branch (AGB), Sun-like stars lose a large portion of their mass in an intensive wind and enrich the surrounding interstellar medium with nuclear processed stellar material in the form of molecular gas and dust. For a number of carbon-rich AGB stars, thin detached shells of gas and dust have been observed. These shells are formed during brief periods of increased mass loss and expansion velocity during a thermal pulse, and open up the possibility to study the mass-loss history of thermally pulsing AGB stars. Aims: We study the properties of dust grains in the detached shell around the carbon AGB star R Scl and aim to quantify the influence of the dust grain properties on the shape of the spectral energy distribution (SED) and the derived dust shell mass. Methods: We modelled the SED of the circumstellar dust emission and compared the models to observations, including new observations of Herschel/PACS and SPIRE (infrared) and APEX/LABOCA (sub-millimeter). We derived present-day mass-loss rates and detached shell masses for a variation of dust grain properties (opacities, chemical composition, grain size, and grain geometry) to quantify the influence of changing dust properties to the derived shell mass. Results: The best-fitting mass-loss parameters are a present-day dust mass-loss rate of 2 × 10-10 M⊙ yr-1 and a detached shell dust mass of (2.9 ± 0.3) × 10-5 M⊙. Compared to similar studies, the uncertainty on the dust mass is reduced by a factor of 4. We find that the size of the grains dominates the shape of the SED, while the estimated dust shell mass is most strongly affected by the geometry of the dust grains. Additionally, we find a significant sub-millimeter excess that cannot be reproduced by any of the models, but is most likely not of thermal origin. Herschel is an ESA space observatory with science instruments provided by European-led Principal Investigator consortia and with important participation from NASA.

A comprehensive high-resolution mass spectrometry approach for characterization of metabolites by combination of ambient ionization, chromatography and imaging methods.

PubMed

Berisha, Arton; Dold, Sebastian; Guenther, Sabine; Desbenoit, Nicolas; Takats, Zoltan; Spengler, Bernhard; Römpp, Andreas

2014-08-30

An ideal method for bioanalytical applications would deliver spatially resolved quantitative information in real time and without sample preparation. In reality these requirements can typically not be met by a single analytical technique. Therefore, we combine different mass spectrometry approaches: chromatographic separation, ambient ionization and imaging techniques, in order to obtain comprehensive information about metabolites in complex biological samples. Samples were analyzed by laser desorption followed by electrospray ionization (LD-ESI) as an ambient ionization technique, by matrix-assisted laser desorption/ionization (MALDI) mass spectrometry imaging for spatial distribution analysis and by high-performance liquid chromatography/electrospray ionization mass spectrometry (HPLC/ESI-MS) for quantitation and validation of compound identification. All MS data were acquired with high mass resolution and accurate mass (using orbital trapping and ion cyclotron resonance mass spectrometers). Grape berries were analyzed and evaluated in detail, whereas wheat seeds and mouse brain tissue were analyzed in proof-of-concept experiments. In situ measurements by LD-ESI without any sample preparation allowed for fast screening of plant metabolites on the grape surface. MALDI imaging of grape cross sections at 20 µm pixel size revealed the detailed distribution of metabolites which were in accordance with their biological function. HPLC/ESI-MS was used to quantify 13 anthocyanin species as well as to separate and identify isomeric compounds. A total of 41 metabolites (amino acids, carbohydrates, anthocyanins) were identified with all three approaches. Mass accuracy for all MS measurements was better than 2 ppm (root mean square error). The combined approach provides fast screening capabilities, spatial distribution information and the possibility to quantify metabolites. Accurate mass measurements proved to be critical in order to reliably combine data from different MS techniques. Initial results on the mycotoxin deoxynivalenol (DON) in wheat seed and phospholipids in mouse brain as a model for mammalian tissue indicate a broad applicability of the presented workflow. Copyright © 2014 John Wiley & Sons, Ltd.

Quantification of mouse in vivo whole-body vibration amplitude from motion-blur using x-ray imaging.

PubMed

Hu, Zhengyi; Welch, Ian; Yuan, Xunhua; Pollmann, Steven I; Nikolov, Hristo N; Holdsworth, David W

2015-08-21

Musculoskeletal effects of whole-body vibration on animals and humans have become an intensely studied topic recently, due to the potential of applying this method as a non-pharmacological therapy for strengthening bones. It is relatively easy to quantify the transmission of whole-body mechanical vibration through the human skeletal system using accelerometers. However, this is not the case for small-animal pre-clinical studies because currently available accelerometers have a large mass, relative to the mass of the animals, which causes the accelerometers themselves to affect the way vibration is transmitted. Additionally, live animals do not typically remain motionless for long periods, unless they are anesthetized, and they are required to maintain a static standing posture during these studies. These challenges provide the motivation for the development of a method to quantify vibrational transmission in small animals. We present a novel imaging technique to quantify whole-body vibration transmission in small animals using 280 μm diameter tungsten carbide beads implanted into the hind limbs of mice. Employing time-exposure digital x-ray imaging, vibrational amplitude is quantified based on the blurring of the implanted beads caused by the vibrational motion. Our in vivo results have shown this technique is capable of measuring vibration amplitudes as small as 0.1 mm, with precision as small as  ±10 μm, allowing us to distinguish differences in the transmitted vibration at different locations on the hindlimbs of mice.

Quantification of mouse in vivo whole-body vibration amplitude from motion-blur using x-ray imaging

NASA Astrophysics Data System (ADS)

Hu, Zhengyi; Welch, Ian; Yuan, Xunhua; Pollmann, Steven I.; Nikolov, Hristo N.; Holdsworth, David W.

2015-08-01

Musculoskeletal effects of whole-body vibration on animals and humans have become an intensely studied topic recently, due to the potential of applying this method as a non-pharmacological therapy for strengthening bones. It is relatively easy to quantify the transmission of whole-body mechanical vibration through the human skeletal system using accelerometers. However, this is not the case for small-animal pre-clinical studies because currently available accelerometers have a large mass, relative to the mass of the animals, which causes the accelerometers themselves to affect the way vibration is transmitted. Additionally, live animals do not typically remain motionless for long periods, unless they are anesthetized, and they are required to maintain a static standing posture during these studies. These challenges provide the motivation for the development of a method to quantify vibrational transmission in small animals. We present a novel imaging technique to quantify whole-body vibration transmission in small animals using 280 μm diameter tungsten carbide beads implanted into the hind limbs of mice. Employing time-exposure digital x-ray imaging, vibrational amplitude is quantified based on the blurring of the implanted beads caused by the vibrational motion. Our in vivo results have shown this technique is capable of measuring vibration amplitudes as small as 0.1 mm, with precision as small as  ±10 μm, allowing us to distinguish differences in the transmitted vibration at different locations on the hindlimbs of mice.

Toward Quantifying the Mass-Based Hygroscopicity of Individual Submicron Atmospheric Aerosol Particles with STXM/NEXAFS and SEM/EDX

NASA Astrophysics Data System (ADS)

Yancey Piens, D.; Kelly, S. T.; OBrien, R. E.; Wang, B.; Petters, M. D.; Laskin, A.; Gilles, M. K.

2014-12-01

The hygroscopic behavior of atmospheric aerosols influences their optical and cloud-nucleation properties, and therefore affects climate. Although changes in particle size as a function of relative humidity have often been used to quantify the hygroscopic behavior of submicron aerosol particles, it has been noted that calculations of hygroscopicity based on size contain error due to particle porosity, non-ideal volume additivity and changes in surface tension. We will present a method to quantify the hygroscopic behavior of submicron aerosol particles based on changes in mass, rather than size, as a function of relative humidity. This method results from a novel experimental approach combining scanning transmission x-ray microscopy with near-edge x-ray absorption fine spectroscopy (STXM/NEXAFS), as well as scanning electron microscopy with energy dispersive x-ray spectroscopy (SEM/EDX) on the same individual particles. First, using STXM/NEXAFS, our methods are applied to aerosol particles of known composition ‒ for instance ammonium sulfate, sodium bromide and levoglucosan ‒ and validated by theory. Then, using STXM/NEXAFS and SEM/EDX, these methods are extended to mixed atmospheric aerosol particles collected in the field at the DOE Atmospheric Radiation Measurement (ARM) Climate Research Facility at the Southern Great Planes sampling site in Oklahoma, USA. We have observed and quantified a range of hygroscopic behaviors which are correlated to the composition and morphology of individual aerosol particles. These methods will have implications for parameterizing aerosol mixing state and cloud-nucleation activity in atmospheric models.

Protein quantification on dendrimer-activated surfaces by using time-of-flight secondary ion mass spectrometry and principal component regression

NASA Astrophysics Data System (ADS)

Kim, Young-Pil; Hong, Mi-Young; Shon, Hyun Kyong; Chegal, Won; Cho, Hyun Mo; Moon, Dae Won; Kim, Hak-Sung; Lee, Tae Geol

2008-12-01

Interaction between streptavidin and biotin on poly(amidoamine) (PAMAM) dendrimer-activated surfaces and on self-assembled monolayers (SAMs) was quantitatively studied by using time-of-flight secondary ion mass spectrometry (ToF-SIMS). The surface protein density was systematically varied as a function of protein concentration and independently quantified using the ellipsometry technique. Principal component analysis (PCA) and principal component regression (PCR) were used to identify a correlation between the intensities of the secondary ion peaks and the surface protein densities. From the ToF-SIMS and ellipsometry results, a good linear correlation of protein density was found. Our study shows that surface protein densities are higher on dendrimer-activated surfaces than on SAMs surfaces due to the spherical property of the dendrimer, and that these surface protein densities can be easily quantified with high sensitivity in a label-free manner by ToF-SIMS.

A tandem mass spectrometric method for singlet oxygen measurement.

PubMed

Karonen, Maarit; Mattila, Heta; Huang, Ping; Mamedov, Fikret; Styring, Stenbjörn; Tyystjärvi, Esa

2014-01-01

Singlet oxygen, a harmful reactive oxygen species, can be quantified with the substance 2,2,6,6-tetramethylpiperidine (TEMP) that reacts with singlet oxygen, forming a stable nitroxyl radical (TEMPO). TEMPO has earlier been quantified with electron paramagnetic resonance (EPR) spectroscopy. In this study, we designed an ultra-high-performance liquid chromatographic-tandem mass spectrometric (UHPLC-ESI-MS/MS) quantification method for TEMPO and showed that the method based on multiple reaction monitoring (MRM) can be used for the measurements of singlet oxygen from both nonbiological and biological samples. Results obtained with both UHPLC-ESI-MS/MS and EPR methods suggest that plant thylakoid membranes produce 3.7 × 10(-7) molecules of singlet oxygen per chlorophyll molecule in a second when illuminated with the photosynthetic photon flux density of 2000 μmol m(-2 ) s(-1). © 2014 The American Society of Photobiology.

Multiple products monitoring as a robust approach for peptide quantification.

PubMed

Baek, Je-Hyun; Kim, Hokeun; Shin, Byunghee; Yu, Myeong-Hee

2009-07-01

Quantification of target peptides and proteins is crucial for biomarker discovery. Approaches such as selected reaction monitoring (SRM) and multiple reaction monitoring (MRM) rely on liquid chromatography and mass spectrometric analysis of defined peptide product ions. These methods are not very widespread because the determination of quantifiable product ion using either SRM or MRM is a very time-consuming process. We developed a novel approach for quantifying target peptides without such an arduous process of ion selection. This method is based on monitoring multiple product ions (multiple products monitoring: MpM) from full-range MS2 spectra of a target precursor. The MpM method uses a scoring system that considers both the absolute intensities of product ions and the similarities between the query MS2 spectrum and the reference MS2 spectrum of the target peptide. Compared with conventional approaches, MpM greatly improves sensitivity and selectivity of peptide quantification using an ion-trap mass spectrometer.

Quantification of Glacier Depletion in the Central Tibetan Plateau by Using Integrated Satellite Remote Sensing and Gravimetry

NASA Astrophysics Data System (ADS)

Tseng, K.-H.; Liu, K. T.; Shum, C. K.; Jia, Y.; Shang, K.; Dai, C.

2016-06-01

Glaciers over the Tibetan Plateau have experienced accelerated depletion in the last few decades due primarily to the global warming. The freshwater drained into brackish lakes is also observed by optical remote sensing and altimetry satellites. However, the actual water storage change is difficult to be quantified since the altimetry or remote sensing only provide data in limited dimensions. The altimetry data give an elevation change of surface while the remote sensing images provide an extent variation in horizontal plane. Hence a data set used to describe the volume change is needed to measure the exact mass transition in a time span. In this study, we utilize GRACE gravimetry mission to quantify the total column mass change in the central Tibetan Plateau, especially focused on the lakes near Tanggula Mountains. By removing these factors, the freshwater storage change of glacier system at study area can be potentially isolated.

Quantitation of flavor-related alkenylbenzenes in tobacco smoke particulate by selected ion monitoring gas chromatography-mass spectrometry.

PubMed

Stanfill, S B; Ashley, D L

2000-04-01

Little is known about the possible health effects associated with inhaling alkenylbenzenes through cigarette smoking, even though these flavor-related compounds have known toxic effects in animals. We developed a rapid and sensitive solid-phase extraction (SPE) method to quantify seven alkenylbenzenes and piperonal in mainstream cigarette smoke particulate. The smoke particulate fraction of a single cigarette was collected on Cambridge filter pads, solvent extracted, concentrated, purified with SPE, and analyzed by selected ion monitoring gas chromatography-mass spectrometry. We positively identified and quantified five alkenylbenzenes compounds (eugenol, isoeugenol, methyleugenol myristicin, and elemicin) and piperonal in the smoke particulate from eight U.S. brands with mean levels (measured in triplicate) ranging from 6.6 to 4210 ng per cigarette. Additionally, complete blocking of nearly invisible ventilation holes in the cigarette filter increased 2- to 7-fold the percent transfer of alkenylbenzenes from tobacco to the particulate fraction of mainstream smoke.

Electrocatalytic activity of ZnS nanoparticles in direct ethanol fuel cells

NASA Astrophysics Data System (ADS)

Bredol, Michael; Kaczmarek, Michał; Wiemhöfer, Hans-Dieter

2014-06-01

Low temperature fuel cells consuming ethanol without reformation would be a major step toward the use of renewable energy sources from biomass. However, the necessary electrodes and electrocatalysts still are far from being perfect and suffer from various poisoning and deactivation processes. This work describes investigations on systems using carbon/ZnS-based electrocatalysts for ethanol oxidation in complete membrane electrode assemblies (MEAs). MEAs were built on Nafion membranes with active masses prepared from ZnS nanoparticles and Vulcan carbon support. Under operation, acetic acid and acetaldehyde were identified and quantified as soluble oxidation products, whereas the amount of CO2 generated could not be quantified directly. Overall conversion efficiencies of up to 25% were estimated from cells operated over prolonged time. From polarization curves, interrupt experiments and analysis of reaction products, mass transport problems (concentration polarization) and breakthrough losses were found to be the main deficiencies of the ethanol oxidation electrodes fabricated so far.

Simultaneous gas chromatographic-mass spectrometric quantitation of the alkylbenzene inert components, pesticide manufacturing by-products and active ingredient in two malathion formulations.

PubMed

Lin, Y W; Hee, S S

1998-07-24

A rapid, reliable and effective method for direct determination of the inert components, manufacturing by-products of the pesticide, and active ingredient in two malathion formulations has been established using capillary gas chromatography-mass spectrometry (GC-MS) with the internal standard method. The C2-, C3-, and C4-alkylbenzenes, the major pesticide manufacturing by-products (O,O,S-trimethylthionophosphate, diethyl maleate and O,O,O-trimethylthionophosphate), and malathion were resolved, and quantified in the same chromatogram. Structural identification was based on MS total ion current data, comparison of GC retention times with those of authentic standards, and retention indices. O,O,S-Trimethylthionophosphate was quantified at 3.57 +/- 0.31% (w/w) in one malathion formulation. While the malathion contents were within specifications for both formulations, the total alkylbenzene contents were not.

Quantitative analysis of [Dmt(1)]DALDA in ovine plasma by capillary liquid chromatography-nanospray ion-trap mass spectrometry.

PubMed

Wan, Haibao; Umstot, Edward S; Szeto, Hazel H; Schiller, Peter W; Desiderio, Dominic M

2004-04-15

The synthetic opioid peptide analog Dmt-D-Arg-Phe-Lys-NH(2) ([Dmt(1)]DALDA; [Dmt= 2',6'-dimethyltyrosine) is a highly potent and selective mu opioid-receptor agonist. A very sensitive and robust capillary liquid chromatography/nanospray ion-trap (IT) mass spectrometry method has been developed to quantify [Dmt(1)]DALDA in ovine plasma, using deuterated [Dmt(1)]DALDA as the internal standard. The standard MS/MS spectra of d(0)- and d(5)-[Dmt(1)]DALDA were obtained, and the collision energy was experimentally optimized to 25%. The product ion [ M + 2H-NH(3)](2+) (m/z 312.2) was used to identify and to quantify the synthetic opioid peptide analog in ovine plasma samples. The MS/MS detection sensitivity for [Dmt(1)]DALDA was 625 amol. A calibration curve was constructed, and quantitative analysis was performed on a series of ovine plasma samples.

Selected Physical Properties of 2-Chloroethyl-3-Chloropropyl Sulfide (CECPRS)

DTIC Science & Technology

2010-10-01

Analysis * For this work, a TA Instruments 910 Differential Scanning Calorimeter and 2200 Controller were used. Prior to sample measurements, the DSC...controlled mass flow rate over a known time, concentrated, and the mass quantified by GC-FID analysis . This step enables vapor pressure measurements for low...Bellefonte, PA), with a 1.0 (im RTx-1 ( polydimethylsiloxane ) stationary phase, was maintained at 40 °C for 2 min following sample introduction, then heated

XMM-Subaru:Complete High Precision Study of Galaxy Clusters for Modern Cosmology

NASA Astrophysics Data System (ADS)

Zhang, Yu-Ying

2011-10-01

We request 382 ks data for 12 clusters to complete our survey of a volume-limited sample of 55 clusters. We investigated the existing data, which hints a mass dependent bias in the X-ray to weak lensing mass ratios for disturbed ones. X-ray mass proxies, e.g., Yx, show low scatter, but the best fits, particularly the slopes, of the mass-observable relations may be biased due to this mass dependence. Our program will quantify any mass/radial dependent bias based on three independent probes (X-ray/lensing/velocity dispersion) for such a volume-limited sample, and deliver definitive constraints on systematics for upcoming cluster cosmology surveys. The dataset will be a major asset for programs aiming to measure dark energy and programs adding a multi-wavelength focus to studies of cluster physics.

Estimation of Plutonium-240 Mass in Waste Tanks Using Ultra-Sensitive Detection of Radioactive Xenon Isotopes from Spontaneous Fission

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bowyer, Theodore W.; Gesh, Christopher J.; Haas, Daniel A.

This report details efforts to develop a technique which is able to detect and quantify the mass of 240Pu in waste storage tanks and other enclosed spaces. If the isotopic ratios of the plutonium contained in the enclosed space is also known, then this technique is capable of estimating the total mass of the plutonium without physical sample retrieval and radiochemical analysis of hazardous material. Results utilizing this technique are reported for a Hanford Site waste tank (TX-118) and a well-characterized plutonium sample in a laboratory environment.

Simultaneous Quantification of Free and Glucuronidated Cannabinoids in Human Urine by Liquid Chromatography-Tandem Mass Spectrometry

PubMed Central

Scheidweiler, Karl B.; Desrosiers, Nathalie A.; Huestis, Marilyn A.

2012-01-01

Background Cannabis is the most commonly abused drug of abuse and is commonly quantified during urine drug testing. We conducted a controlled drug administration studies investigating efficacy of urinary cannabinoid glucuronide metabolites for documenting recency of cannabis intake and for determining stability of urinary cannabinoids. Methods A liquid chromatography tandem mass spectrometry method was developed and validated quantifying Δ9-tetrahydrocannabinol (THC), 11-hydroxy-THC (11-OH-THC), 11-nor-9-carboxy-THC (THCCOOH), cannabidiol, cannabinol, THC-glucuronide and THCCOOH-glucuronide in 0.5 ml human urine via supported-liquid extraction. Chromatography was performed on an Ultra Biphenyl column with a gradient of 10 mmol/l ammonium acetate, pH 6.15 and 15% methanol in acetonitrile at 0. 4ml/min. Analytes were monitored by positive and negative mode electrospray ionization and multiple reaction monitoring mass spectrometry. Results Linear ranges were 0.5–50 ng/ml for THC-glucuronide, 1–100 ng/ml for THCCOOH, 11-OH-THC and cannabidiol, 2–100 ng/ml for THC and cannabinol, and 5–500 ng/ml for THCCOOH-glucuronide (R2>0.99). Mean extraction efficiencies were 34–73% with analytical recovery (bias) 80.5–118.0% and total imprecision 3.0–10.2% coefficient of variation. Conclusion This method simultaneously quantifies urinary cannabinoids and phase II glucuronide metabolites, and enables evaluation of urinary cannabinoid glucuronides for documenting recency of cannabis intake and cannabinoid stability. The assay is applicable for routine urine cannabinoid testing. PMID:22771478

The Systematics of Strong Lens Modeling Quantified: The Effects of Constraint Selection and Redshift Information on Magnification, Mass, and Multiple Image Predictability

NASA Astrophysics Data System (ADS)

Johnson, Traci L.; Sharon, Keren

2016-11-01

Until now, systematic errors in strong gravitational lens modeling have been acknowledged but have never been fully quantified. Here, we launch an investigation into the systematics induced by constraint selection. We model the simulated cluster Ares 362 times using random selections of image systems with and without spectroscopic redshifts and quantify the systematics using several diagnostics: image predictability, accuracy of model-predicted redshifts, enclosed mass, and magnification. We find that for models with >15 image systems, the image plane rms does not decrease significantly when more systems are added; however, the rms values quoted in the literature may be misleading as to the ability of a model to predict new multiple images. The mass is well constrained near the Einstein radius in all cases, and systematic error drops to <2% for models using >10 image systems. Magnification errors are smallest along the straight portions of the critical curve, and the value of the magnification is systematically lower near curved portions. For >15 systems, the systematic error on magnification is ∼2%. We report no trend in magnification error with the fraction of spectroscopic image systems when selecting constraints at random; however, when using the same selection of constraints, increasing this fraction up to ∼0.5 will increase model accuracy. The results suggest that the selection of constraints, rather than quantity alone, determines the accuracy of the magnification. We note that spectroscopic follow-up of at least a few image systems is crucial because models without any spectroscopic redshifts are inaccurate across all of our diagnostics.

Technical note: A comparison of reticular and ruminal pH monitored continuously with 2 measurement systems at different weeks of early lactation.

PubMed

Falk, M; Münger, A; Dohme-Meier, F

2016-03-01

Subacute ruminal acidosis is one of the most important digestive disorders in high-yielding dairy cows fed highly fermentable diets. Monitoring of forestomach pH has been suggested as a potentially valuable tool for diagnosing subacute ruminal acidosis. The objective of the present study was to compare continuously recorded measurements of an indwelling telemetric pH sensor inserted orally in the reticulum with those obtained from a measurement system placed in the ventral sac of the rumen through a cannula. The experiment was conducted with 6 ruminally cannulated Holstein cows kept in a freestall barn. Equal numbers of cows were assigned to 2 treatment groups based on their previous lactation milk yield. Cows in treatment CON- were offered a diet consisting of only fresh herbage cut once daily, and cows in treatment CON+ got fresh herbage plus a concentrate supplement according to the individual milk yield of each cow to meet their predicted nutrient requirements. The experiment lasted from 2 wk before the predicted calving date until wk 8 of lactation. During the whole experiment, a pH value was recorded every 10 min in the reticulum using a wireless telemetry bolus including a pH sensor (eBolus, eCow Ltd., Exeter, Devon, UK), which had been applied orally using a balling gun. Simultaneously, in wk 2, before the estimated calving date and in wk 2, 4, 6, and 8 of lactation, the ruminal pH was measured every 30 s for 48 h with the LRCpH measurement system (Dascor Inc., Escondido, CA) placed in the ventral sac of the rumen through the cannula. The readings of the LRCpH measurement system were summarized as an average over 10 min for statistical analysis. The recorded pH values were on average 0.24 pH units higher in the reticulum than in the rumen. The reticular pH also showed less fluctuation (overall SD 0.19 pH units) than pH profiles recorded in the rumen (overall SD 0.51 pH units). Regardless of measurement system, pH was not influenced by treatment, but varied across week of lactation and decreased with advancing lactation. The difference between ruminal and reticular pH varied across week of lactation. Due to this variation, no fixed conversion factor can be provided to make pH measurements in the reticulum comparable with those in the rumen. Copyright © 2016 American Dairy Science Association. Published by Elsevier Inc. All rights reserved.

Foraging behavior of two cattle breeds, a whole-year study: I. Heat production, activity, and energy costs.

PubMed

Aharoni, Y; Dolev, A; Henkin, Z; Yehuda, Y; Ezra, A; Ungar, E D; Shabtay, A; Brosh, A

2013-03-01

The foraging behavior and energy costs of activity of 19 large-frame Beefmaster × Simford (BS) cross mature cows and 14 small-frame Baladi (BA) mature cows was determined. Cows were allocated to the same paddock of a Mediterranean pasture and were monitored during 5 seasons throughout 2006 and 2007: spring (April 2006), summer (June 2006), autumn (September 2006), winter (February 2007), and early spring (March 2007). Cows were given poultry litter (25% CP, DM basis) as supplemental feed during autumn only. The cows were fitted for 3 to 4 d in each season with global positioning system (GPS) monitors, activity monitors attached to 1 of their hind legs, and heart rate (HR) monitors harnessed to their chests. Oxygen consumption per heart beat was determined for each cow during each season to enable conversion of the diurnal HR patterns to heat production (HP) units. All GPS data of cattle locations and activity and the HR and HP data were synchronized to produce simultaneous 5-min interval records; step length also was calculated for each record. These records provided summaries of partitioning among activities: lying down, standing, foraging, and walking without foraging as well as horizontal and vertical distances walked per day and number of steps taken per day. These attributes were analyzed using multiple regression models to relate these activities to HP and to estimate specific HP costs per unit of each activity. Accordingly, the daily energy costs of activity were calculated for the 2 cattle types in each season as the product of the specific activity and the number of units of each activity per day. The HP level of the large-frame BS cows was greater than that of the small-frame BA cows in winter and lower in spring (P < 0.001); however, the respective HP levels were much closer in summer and autumn, with BA cows having values greater by 3% than those of BS cows. The BA cows were more active than the BS cows during all seasons: they foraged for more hours per day (P < 0.001) and walked longer distances (P < 0.001). The mean specific costs of activity of BA cows were 20% less than those of BS cows (P < 0.001). The BA cows took longer steps during foraging and walking idle compared with BS cows despite their much smaller frame. The BA cows were more efficient in conditions of low herbage quality whereas metabolic rate of BS cows was greater in conditions of high herbage quality.

Modeling the Impact of Space Suit Components and Anthropometry on the Center of Mass of a Seated Crewmember

NASA Technical Reports Server (NTRS)

Blackledge, Christopher; Margerum, Sarah; Ferrer, Mike; Morency, Richard; Rajulu, Sudhakar

2010-01-01

The Crew Impact Attenuation System (CIAS) is the energy-absorbing strut concept that dampens Orion Crew Exploration Vehicle (CEV) landing loads to levels sustainable by the crew. Significant COM variations across suited crew configurations would amplify the inertial effects of the pallet and potentially create unacceptable crew loading during launch and landing. The objective of this study was to obtain data needed for dynamic simulation models by quantifying the effects of posture, suit components, and the expected range of anthropometry on the COM of a seated individual. Several elements are required for the COM calculation of a suited human in a seated position: anthropometry, body segment mass, suit component mass, suit component location relative to the body, and joint angles defining the seated posture. Three-dimensional (3D) human body models, suit mass data, and vector calculus were utilized to compute the COM positions for 12 boundary manikins in two different seated postures. The analysis focused on two objectives: (1) quantify how much the wholebody COM varied from the smallest to largest subject and (2) quantify the effects of the suit components on the overall COM in each seat configuration. The location of the anterior-posterior COM varied across all boundary manikins by about 7 cm, and the vertical COM varied by approximately 9 to 10 cm. The mediolateral COM varied by 1.2 cm from the midline sagittal plane for both seat configurations. The suit components caused an anterior shift of the total COM by approximately 2 cm and a shift to the right along the mediolateral axis of 0.4 cm for both seat configurations. When the seat configuration was in the standard posture the suited vertical COM shifted inferiorly by as much as 1 cm, whereas in the CEV posture the vertical COM had no appreciable change. These general differences were due to the high proportion of suit mass located in the boots and lower legs and their corresponding distance from the body COM, as well as to the prevalence of suit components on the right side of the body.

Anthropogenic disturbance of element cycles at the Earth's surface.

PubMed

Sen, Indra S; Peucker-Ehrenbrink, Bernhard

2012-08-21

The extent to which humans are modifying Earth's surface chemistry can be quantified by comparing total anthropogenic element fluxes with their natural counterparts (Klee and Graedel, 2004). We quantify anthropogenic mass transfer of 77 elements from mining, fossil fuel burning, biomass burning, construction activities, and human apportionment of terrestrial net primary productivity, and compare it to natural mass transfer from terrestrial and marine net primary productivity, riverine dissolved and suspended matter fluxes to the ocean, soil erosion, eolian dust, sea-salt spray, cosmic dust, volcanic emissions, and for helium, hydrodynamic escape from the Earth's atmosphere. We introduce an approach to correct for losses during industrial processing of elements belonging to geochemically coherent groups, and explicitly incorporate uncertainties of element mass fluxes through Monte Carlo simulations. We find that at the Earth's surface anthropogenic fluxes of iridium, osmium, helium, gold, ruthenium, antimony, platinum, palladium, rhenium, rhodium and chromium currently exceed natural fluxes. For these elements mining is the major factor of anthropogenic influence, whereas petroleum burning strongly influences the surficial cycle of rhenium. Our assessment indicates that if anthropogenic contributions to soil erosion and eolian dust are considered, anthropogenic fluxes of up to 62 elements surpass their corresponding natural fluxes.

Range of protein detection by selected/multiple reaction monitoring mass spectrometry in an unfractionated human cell culture lysate.

PubMed

Ebhardt, H Alexander; Sabidó, Eduard; Hüttenhain, Ruth; Collins, Ben; Aebersold, Ruedi

2012-04-01

Selected or multiple reaction monitoring is a targeted mass spectrometry method (S/MRM-MS), in which many peptides are simultaneously and consistently analyzed during a single liquid chromatography-mass spectrometry (LC-S/MRM-MS) measurement. These capabilities make S/MRM-MS an attractive method to monitor a consistent set of proteins over various experimental conditions. To increase throughput for S/MRM-MS it is advantageous to use scheduled methods and unfractionated protein extracts. Here, we established the practically measurable dynamic range of proteins reliably detectable and quantifiable in an unfractionated protein extract from a human cell line using LC-S/MRM-MS. Initially, we analyzed S/MRM transition peak groups in terms of interfering signals and compared S/MRM transition peak groups to MS1-triggered MS2 spectra using dot-product analysis. Finally, using unfractionated protein extract from human cell lysate, we quantified the upper boundary of copies per cell to be 35 million copies per cell, while 7500 copies per cell represents a lower boundary using a single 35 min linear gradient LC-S/MRM-MS measurement on a current, standard commercial instrument. © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Analysis of polyethylene microplastics in environmental samples, using a thermal decomposition method.

PubMed

Dümichen, Erik; Barthel, Anne-Kathrin; Braun, Ulrike; Bannick, Claus G; Brand, Kathrin; Jekel, Martin; Senz, Rainer

2015-11-15

Small polymer particles with a diameter of less than 5 mm called microplastics find their way into the environment from polymer debris and industrial production. Therefore a method is needed to identify and quantify microplastics in various environmental samples to generate reliable concentration values. Such concentration values, i.e. quantitative results, are necessary for an assessment of microplastic in environmental media. This was achieved by thermal extraction in thermogravimetric analysis (TGA), connected to a solid-phase adsorber. These adsorbers were subsequently analysed by thermal desorption gas chromatography mass spectrometry (TDS-GC-MS). In comparison to other chromatographic methods, like pyrolyse gas chromatography mass spectrometry (Py-GC-MS), the relatively high sample masses in TGA (about 200 times higher than used in Py-GC-MS) analysed here enable the measurement of complex matrices that are not homogenous on a small scale. Through the characteristic decomposition products known for every kind of polymer it is possible to identify and even to quantify polymer particles in various matrices. Polyethylene (PE), one of the most important representatives for microplastics, was chosen as an example for identification and quantification. Copyright © 2015 Elsevier Ltd. All rights reserved.

Imaging of β-cell mass and insulitis in insulin-dependent (Type 1) diabetes mellitus.

PubMed

Di Gialleonardo, Valentina; de Vries, Erik F J; Di Girolamo, Marco; Quintero, Ana M; Dierckx, Rudi A J O; Signore, Alberto

2012-12-01

Insulin-dependent (type 1) diabetes mellitus is a metabolic disease with a complex multifactorial etiology and a poorly understood pathogenesis. Genetic and environmental factors cause an autoimmune reaction against pancreatic β-cells, called insulitis, confirmed in pancreatic samples obtained at autopsy. The possibility to noninvasively quantify β-cell mass in vivo would provide important biological insights and facilitate aspects of diagnosis and therapy, including follow-up of islet cell transplantation. Moreover, the availability of a noninvasive tool to quantify the extent and severity of pancreatic insulitis could be useful for understanding the natural history of human insulin-dependent (type 1) diabetes mellitus, to early diagnose children at risk to develop overt diabetes, and to select patients to be treated with immunotherapies aimed at blocking the insulitis and monitoring the efficacy of these therapies. In this review, we outline the imaging techniques currently available for in vivo, noninvasive detection of β-cell mass and insulitis. These imaging techniques include magnetic resonance imaging, ultrasound, computed tomography, bioluminescence and fluorescence imaging, and the nuclear medicine techniques positron emission tomography and single-photon emission computed tomography. Several approaches and radiopharmaceuticals for imaging β-cells and lymphocytic insulitis are reviewed in detail.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wolfe, R.R.; Peters, E.J.; Klein, S.

In this study the rate of lipolysis (fatty acid and glycerol release into blood) has been quantified in both normal weight and obese volunteers after both 15 and 87 h of fasting. In each study, the basal rate and subsequent response to epinephrine infusion were determined. The rate of appearance (R/sub a/) of free fatty acids (FFA) and glycerol were quantified by infusion of (1- TC)palmitate and D-5-glycerol, respectively. Substrate flux rates per unit of body fat mass and lean body mass were calculated from total body water measurements using H2 YO dilution. In normal volunteers, the basal R/sub a/more » FFA and R/sub a/ glycerol rose markedly with 87 h of fasting, whereas the increases were more modest in the obese subjects. However, the rate of mobilization of fat, in relation to the lean body mass, was higher in the obese subjects than in the normal subjects after 15 h of fasting, and the values were similar in both groups after 87 h of fasting. There was an increased lipolytic response to epinephrine after fasting in both groups. This increased sensitivity may have resulted from the enhancement of fatty acid-triglyceride substrate cycling that occurred after fasting.« less

Explosive particle soil surface dispersion model for detonated military munitions.

PubMed

Hathaway, John E; Rishel, Jeremy P; Walsh, Marianne E; Walsh, Michael R; Taylor, Susan

2015-07-01

The accumulation of high explosive mass residue from the detonation of military munitions on training ranges is of environmental concern because of its potential to contaminate the soil, surface water, and groundwater. The US Department of Defense wants to quantify, understand, and remediate high explosive mass residue loadings that might be observed on active firing ranges. Previously, efforts using various sampling methods and techniques have resulted in limited success, due in part to the complicated dispersion pattern of the explosive particle residues upon detonation. In our efforts to simulate particle dispersal for high- and low-order explosions on hypothetical firing ranges, we use experimental particle data from detonations of munitions from a 155-mm howitzer, which are common military munitions. The mass loadings resulting from these simulations provide a previously unattained level of detail to quantify the explosive residue source-term for use in soil and water transport models. In addition, the resulting particle placements can be used to test, validate, and optimize particle sampling methods and statistical models as applied to firing ranges. Although the presented results are for a hypothetical 155-mm howitzer firing range, the method can be used for other munition types once the explosive particle characteristics are known.

Sampling and analysis method for measuring airborne coal dust mass in mixtures with limestone (rock) dust.

PubMed

Barone, T L; Patts, J R; Janisko, S J; Colinet, J F; Patts, L D; Beck, T W; Mischler, S E

2016-01-01

Airborne coal dust mass measurements in underground bituminous coal mines can be challenged by the presence of airborne limestone dust, which is an incombustible dust applied to prevent the propagation of dust explosions. To accurately measure the coal portion of this mixed airborne dust, the National Institute for Occupational Safety and Health (NIOSH) developed a sampling and analysis protocol that used a stainless steel cassette adapted with an isokinetic inlet and the low temperature ashing (LTA) analytical method. The Mine Safety and Health Administration (MSHA) routinely utilizes this LTA method to quantify the incombustible content of bulk dust samples collected from the roof, floor, and ribs of mining entries. The use of the stainless steel cassette with isokinetic inlet allowed NIOSH to adopt the LTA method for the analysis of airborne dust samples. Mixtures of known coal and limestone dust masses were prepared in the laboratory, loaded into the stainless steel cassettes, and analyzed to assess the accuracy of this method. Coal dust mass measurements differed from predicted values by an average of 0.5%, 0.2%, and 0.1% for samples containing 20%, 91%, and 95% limestone dust, respectively. The ability of this method to accurately quantify the laboratory samples confirmed the validity of this method and allowed NIOSH to successfully measure the coal fraction of airborne dust samples collected in an underground coal mine.

Sampling and analysis method for measuring airborne coal dust mass in mixtures with limestone (rock) dust

PubMed Central

Barone, T. L.; Patts, J. R.; Janisko, S. J.; Colinet, J. F.; Patts, L. D.; Beck, T. W.; Mischler, S. E.

2016-01-01

Airborne coal dust mass measurements in underground bituminous coal mines can be challenged by the presence of airborne limestone dust, which is an incombustible dust applied to prevent the propagation of dust explosions. To accurately measure the coal portion of this mixed airborne dust, the National Institute for Occupational Safety and Health (NIOSH) developed a sampling and analysis protocol that used a stainless steel cassette adapted with an isokinetic inlet and the low temperature ashing (LTA) analytical method. The Mine Safety and Health Administration (MSHA) routinely utilizes this LTA method to quantify the incombustible content of bulk dust samples collected from the roof, floor, and ribs of mining entries. The use of the stainless steel cassette with isokinetic inlet allowed NIOSH to adopt the LTA method for the analysis of airborne dust samples. Mixtures of known coal and limestone dust masses were prepared in the laboratory, loaded into the stainless steel cassettes, and analyzed to assess the accuracy of this method. Coal dust mass measurements differed from predicted values by an average of 0.5%, 0.2%, and 0.1% for samples containing 20%, 91%, and 95% limestone dust, respectively. The ability of this method to accurately quantify the laboratory samples confirmed the validity of this method and allowed NIOSH to successfully measure the coal fraction of airborne dust samples collected in an underground coal mine. PMID:26618374

Aerosol generation and measurement of multi-wall carbon nanotubes

NASA Astrophysics Data System (ADS)

Myojo, Toshihiko; Oyabu, Takako; Nishi, Kenichiro; Kadoya, Chikara; Tanaka, Isamu; Ono-Ogasawara, Mariko; Sakae, Hirokazu; Shirai, Tadashi

2009-01-01

Mass production of some kinds of carbon nanotubes (CNT) is now imminent, but little is known about the risk associated with their exposure. It is important to assess the propensity of the CNT to release particles into air for its risk assessment. In this study, we conducted aerosolization of a multi-walled CNT (MWCNT) to assess several aerosol measuring instruments. A Palas RBG-1000 aerosol generator applied mechanical stress to the MWCNT by a rotating brush at feed rates ranging from 2 to 20 mm/h, which the MWCNT was fed to a two-component fluidized bed. The fluidized bed aerosol generator was used to disperse the MWCNT aerosol once more. We monitored the generated MWCNT aerosol concentrations based on number, area, and mass using a condensation particle counter and nanoparticle surface area monitor. Also we quantified carbon mass in MWCNT aerosol samples by a carbon monitor. The shape of aerosolized MWCNT fibers was observed by a scanning electron microscope (SEM). The MWCNT was well dispersed by our system. We found isolated MWCNT fibers in the aerosols by SEM and the count median lengths of MWCNT fibers were 4-6 μm. The MWCNT was quantified by the carbon monitor with a modified condition based on the NIOSH analytical manual. The MWCNT aerosol concentration (EC mass base) was 4 mg/m3 at 2 mm/h in this study.

Quantifying Uncertainties in Mass-Dimensional Relationships Through a Comparison Between CloudSat and SPartICus Reflectivity Factors

NASA Astrophysics Data System (ADS)

Mascio, J.; Mace, G. G.

2015-12-01

CloudSat and CALIPSO, two of the satellites in the A-Train constellation, use algorithms to calculate the scattering properties of small cloud particles, such as the T-matrix method. Ice clouds (i.e. cirrus) cause problems with these cloud property retrieval algorithms because of their variability in ice mass as a function of particle size. Assumptions regarding the microphysical properties, such as mass-dimensional (m-D) relationships, are often necessary in retrieval algorithms for simplification, but these assumptions create uncertainties of their own. Therefore, ice cloud property retrieval uncertainties can be substantial and are often not well known. To investigate these uncertainties, reflectivity factors measured by CloudSat are compared to those calculated from particle size distributions (PSDs) to which different m-D relationships are applied. These PSDs are from data collected in situ during three flights of the Small Particles in Cirrus (SPartICus) campaign. We find that no specific habit emerges as preferred and instead we conclude that the microphysical characteristics of ice crystal populations tend to be distributed over a continuum and, therefore, cannot be categorized easily. To quantify the uncertainties in the mass-dimensional relationships, an optimal estimation inversion was run to retrieve the m-D relationship per SPartICus flight, as well as to calculate uncertainties of the m-D power law.

Recommended Mass Spectrometry-Based Strategies to Identify Ricin-Containing Samples

PubMed Central

Kalb, Suzanne R.; Schieltz, David M.; Becher, François; Astot, Crister; Fredriksson, Sten-Åke; Barr, John R.

2015-01-01

Ricin is a protein toxin produced by the castor bean plant (Ricinus communis) together with a related protein known as R. communis agglutinin (RCA120). Mass spectrometric (MS) assays have the capacity to unambiguously identify ricin and to detect ricin’s activity in samples with complex matrices. These qualitative and quantitative assays enable detection and differentiation of ricin from the less toxic RCA120 through determination of the amino acid sequence of the protein in question, and active ricin can be monitored by MS as the release of adenine from the depurination of a nucleic acid substrate. In this work, we describe the application of MS-based methods to detect, differentiate and quantify ricin and RCA120 in nine blinded samples supplied as part of the EQuATox proficiency test. Overall, MS-based assays successfully identified all samples containing ricin or RCA120 with the exception of the sample spiked with the lowest concentration (0.414 ng/mL). In fact, mass spectrometry was the most successful method for differentiation of ricin and RCA120 based on amino acid determination. Mass spectrometric methods were also successful at ranking the functional activities of the samples, successfully yielding semi-quantitative results. These results indicate that MS-based assays are excellent techniques to detect, differentiate, and quantify ricin and RCA120 in complex matrices. PMID:26610568

Direct Measurements of Gas/Particle Partitioning and Mass Accommodation Coefficients in Environmental Chambers.

PubMed

Krechmer, Jordan E; Day, Douglas A; Ziemann, Paul J; Jimenez, Jose L

2017-10-17

Secondary organic aerosols (SOA) are a major contributor to fine particulate mass and wield substantial influences on the Earth's climate and human health. Despite extensive research in recent years, many of the fundamental processes of SOA formation and evolution remain poorly understood. Most atmospheric aerosol models use gas/particle equilibrium partitioning theory as a default treatment of gas-aerosol transfer, despite questions about potentially large kinetic effects. We have conducted fundamental SOA formation experiments in a Teflon environmental chamber using a novel method. A simple chemical system produces a very fast burst of low-volatility gas-phase products, which are competitively taken up by liquid organic seed particles and Teflon chamber walls. Clear changes in the species time evolution with differing amounts of seed allow us to quantify the particle uptake processes. We reproduce gas- and aerosol-phase observations using a kinetic box model, from which we quantify the aerosol mass accommodation coefficient (α) as 0.7 on average, with values near unity especially for low volatility species. α appears to decrease as volatility increases. α has historically been a very difficult parameter to measure with reported values varying over 3 orders of magnitude. We use the experimentally constrained model to evaluate the correction factor (Φ) needed for chamber SOA mass yields due to losses of vapors to walls as a function of species volatility and particle condensational sink. Φ ranges from 1-4.

Airborne concentrations of volatile organic compounds in neonatal incubators.

PubMed

Prazad, P; Cortes, D R; Puppala, B L; Donovan, R; Kumar, S; Gulati, A

2008-08-01

To identify and quantify airborne volatile organic compounds (VOCs) inside neonatal incubators during various modes of operation within the neonatal intensive care unit (NICU) environment. Air samples were taken from 10 unoccupied incubators in four operational settings along with ambient air samples using air sampling canisters. The samples were analyzed following EPA TO-15 using a Tekmar AutoCan interfaced to Agilent 6890 Gas Chromatograph with a 5973 Mass Spectrometer calibrated for 60 EPA TO-15 method target compounds. Non-target compounds were tentatively identified using mass spectral interpretation and with a mass spectral library created by National Institute for Standards and Technology. Two non-target compounds, 2-heptanone and n-butyl acetate, were found at elevated concentrations inside the incubators compared with ambient room air samples. Increase in temperature and addition of humidity produced further increased concentrations of these compounds. Their identities were verified by mass spectra and relative retention times using authentic standards. They were quantified using vinyl acetate and 2-hexanone as surrogate standards. The emission pattern of these two compounds and background measurements indicate that they originate inside the incubator. There is evidence that exposure to some VOCs may adversely impact the fetal and developing infants' health. Currently, as there is no definitive information available on the effects of acute or chronic low-level exposure to these compounds in neonates, future studies evaluating the health effects of neonatal exposure to these VOCs are needed.

Quantification of short- and medium-chain chlorinated paraffins in environmental samples by gas chromatography quadrupole time-of-flight mass spectrometry.

PubMed

Gao, Wei; Wu, Jing; Wang, Yawei; Jiang, Guibin

2016-06-24

Chlorinated paraffins (CPs) are technical products produced and used in bulk for a number of purposes. However, the analysis of CPs is challenging, as they are complex mixtures of compounds and isomers. We herein report the development of an analytical method for the analysis of short-chain CPs (SCCPs) and medium-chain CPs (MCCPs) using quadrupole time-of-flight high-resolution mass spectrometry (GC-NCI-qTOF-HRMS). This method employs gas chromatography with a chemical ionization source working in negative mode. The linear relationship between chlorination and the CP total response factors was applied to quantify the CP content and the congener group distribution patterns. In a single injection, 24 SCCP formula groups and 24 MCCP formula groups were quantified. Extraction of accurate masses using qTOF-HRMS allowed the SCCPs and MCCPs to be distinguished, with interference from other chemicals (e.g., PCBs) being largely avoided. The SCCP and MCCP detection limits were 24-81ng/mL and 27-170ng/mL, respectively. Comparison of the obtained results with analytical results from gas chromatography coupled with electron capture negative ionization low-resolution mass spectrometry (GC-ECNI-LRMS) indicate that the developed technique is a more accurate and convenient method for the analysis of CPs in samples from a range of matrices. Copyright © 2016 Elsevier B.V. All rights reserved.

Quantifying Feedback from Narrow Line Region Outflows in Nearby Active Galaxies. I. Spatially Resolved Mass Outflow Rates for the Seyfert 2 Galaxy Markarian 573

NASA Astrophysics Data System (ADS)

Revalski, M.; Crenshaw, D. M.; Kraemer, S. B.; Fischer, T. C.; Schmitt, H. R.; Machuca, C.

2018-03-01

We present the first spatially resolved mass outflow rate measurements ({\\dot{M}}out}) of the optical emission line gas in the narrow line region (NLR) of a Seyfert 2 galaxy, Markarian 573. Using long slit spectra and [O III] imaging from the Hubble Space Telescope and Apache Point Observatory in conjunction with emission line diagnostics and Cloudy photoionization models, we find a peak outflow rate of {\\dot{M}}out}≈ 3.4 +/- 0.5 {M}ȯ {yr}}-1 at a distance of 210 pc from the central supermassive black hole (SMBH). The outflow extends to distances of 600 pc from the nucleus with a total mass and kinetic energy of M ≈ 2.2 × 106 M ⊙ and E ≈ 5.1 × 1054 erg, revealing the outflows to be more energetic than those in the lower luminosity Seyfert 1 galaxy NGC 4151. The peak outflow rate is an order of magnitude larger than the mass accretion and nuclear outflow rates, indicating local in situ acceleration of the circumnuclear NLR gas. We compare these results to global techniques that quantify an average outflow rate across the NLR, and find the latter are subject to larger uncertainties. These results indicate that spatially resolved observations are critical for probing AGN feedback on scales where circumnuclear star formation occurs.

Analysis of biogenic carbonyl compounds in rainwater by stir bar sorptive extraction technique with chemical derivatization and gas chromatography‐mass spectrometry

PubMed Central

Lewis, Alastair C.; Shaw, Marvin D.

2016-01-01

Stir bar sorptive extraction is a powerful technique for the extraction and analysis of organic compounds in aqueous matrices. Carbonyl compounds are ubiquitous components in rainwater, however, it is a major challenge to accurately identify and sensitively quantify carbonyls from rainwater due to the complex matrix. A stir bar sorptive extraction technique was developed to efficiently extract carbonyls from aqueous samples following chemical derivatization by O‐(2,3,4,5,6‐pentafluorobenzyl) hydroxylamine hydrochloride. Several commercial stir bars in two sizes were used to simultaneously measure 29 carbonyls in aqueous samples with detection by gas chromatography with mass spectrometry. A 100 mL aqueous sample was extracted by stir bars and the analytes on stir bars were desorbed into a 2 mL solvent solution in an ultrasonic bath. The preconcentration Coefficient for different carbonyls varied between 30 and 45 times. The limits of detection of stir bar sorptive extraction with gas chromatography mass spectrometry for carbonyls (10–30 ng/L) were improved by ten times compared with other methods such as gas chromatography with electron capture detection and stir bar sorptive extraction with high‐performance liquid chromatography and mass spectrometry. The technique was used to determine carbonyls in rainwater samples collected in York, UK, and 20 carbonyl species were quantified including glyoxal, methylglyoxal, isobutenal, 2‐hydroxy ethanal. PMID:27928898

Structure Annotation and Quantification of Wheat Seed Oxidized Lipids by High-Resolution LC-MS/MS.

PubMed

Riewe, David; Wiebach, Janine; Altmann, Thomas

2017-10-01

Lipid oxidation is a process ubiquitous in life, but the direct and comprehensive analysis of oxidized lipids has been limited by available analytical methods. We applied high-resolution liquid chromatography-mass spectrometry (LC-MS) and tandem mass spectrometry (MS/MS) to quantify oxidized lipids (glycerides, fatty acids, phospholipids, lysophospholipids, and galactolipids) and implemented a platform-independent high-throughput-amenable analysis pipeline for the high-confidence annotation and acyl composition analysis of oxidized lipids. Lipid contents of 90 different naturally aged wheat ( Triticum aestivum ) seed stocks were quantified in an untargeted high-resolution LC-MS experiment, resulting in 18,556 quantitative mass-to-charge ratio features. In a posthoc liquid chromatography-tandem mass spectrometry experiment, high-resolution MS/MS spectra (5 mD accuracy) were recorded for 8,957 out of 12,080 putatively monoisotopic features of the LC-MS data set. A total of 353 nonoxidized and 559 oxidized lipids with up to four additional oxygen atoms were annotated based on the accurate mass recordings (1.5 ppm tolerance) of the LC-MS data set and filtering procedures. MS/MS spectra available for 828 of these annotations were analyzed by translating experimentally known fragmentation rules of lipids into the fragmentation of oxidized lipids. This led to the identification of 259 nonoxidized and 365 oxidized lipids by both accurate mass and MS/MS spectra and to the determination of acyl compositions for 221 nonoxidized and 295 oxidized lipids. Analysis of 15-year aged wheat seeds revealed increased lipid oxidation and hydrolysis in seeds stored in ambient versus cold conditions. © 2017 The author(s). All Rights Reserved.

High-mass-resolution MALDI mass spectrometry imaging reveals detailed spatial distribution of metabolites and lipids in roots of barley seedlings in response to salinity stress.

PubMed

Sarabia, Lenin D; Boughton, Berin A; Rupasinghe, Thusitha; van de Meene, Allison M L; Callahan, Damien L; Hill, Camilla B; Roessner, Ute

2018-01-01

Mass spectrometry imaging (MSI) is a technology that enables the visualization of the spatial distribution of hundreds to thousands of metabolites in the same tissue section simultaneously. Roots are below-ground plant organs that anchor plants to the soil, take up water and nutrients, and sense and respond to external stresses. Physiological responses to salinity are multifaceted and have predominantly been studied using whole plant tissues that cannot resolve plant salinity responses spatially. This study aimed to use a comprehensive approach to study the spatial distribution and profiles of metabolites, and to quantify the changes in the elemental content in young developing barley seminal roots before and after salinity stress. Here, we used a combination of liquid chromatography-mass spectrometry (LC-MS), inductively coupled plasma mass spectrometry (ICP-MS), and matrix-assisted laser desorption/ionization (MALDI-MSI) platforms to profile and analyze the spatial distribution of ions, metabolites and lipids across three anatomically different barley root zones before and after a short-term salinity stress (150 mM NaCl). We localized, visualized and discriminated compounds in fine detail along longitudinal root sections and compared ion, metabolite, and lipid composition before and after salt stress. Large changes in the phosphatidylcholine (PC) profiles were observed as a response to salt stress with PC 34:n showing an overall reduction in salt treated roots. ICP-MS analysis quantified changes in the elemental content of roots with increases of Na + and decreases of K + content. Our results established the suitability of combining three mass spectrometry platforms to analyze and map ionic and metabolic responses to salinity stress in plant roots and to elucidate tolerance mechanisms in response to abiotic stress, such as salinity stress.

Mass spectrometric determination of early and advanced glycation in biology.

PubMed

Rabbani, Naila; Ashour, Amal; Thornalley, Paul J

2016-08-01

Protein glycation in biological systems occurs predominantly on lysine, arginine and N-terminal residues of proteins. Major quantitative glycation adducts are found at mean extents of modification of 1-5 mol percent of proteins. These are glucose-derived fructosamine on lysine and N-terminal residues of proteins, methylglyoxal-derived hydroimidazolone on arginine residues and N(ε)-carboxymethyl-lysine residues mainly formed by the oxidative degradation of fructosamine. Total glycation adducts of different types are quantified by stable isotopic dilution analysis liquid chromatography-tandem mass spectrometry (LC-MS/MS) in multiple reaction monitoring mode. Metabolism of glycated proteins is followed by LC-MS/MS of glycation free adducts as minor components of the amino acid metabolome. Glycated proteins and sites of modification within them - amino acid residues modified by the glycating agent moiety - are identified and quantified by label-free and stable isotope labelling with amino acids in cell culture (SILAC) high resolution mass spectrometry. Sites of glycation by glucose and methylglyoxal in selected proteins are listed. Key issues in applying proteomics techniques to analysis of glycated proteins are: (i) avoiding compromise of analysis by formation, loss and relocation of glycation adducts in pre-analytic processing; (ii) specificity of immunoaffinity enrichment procedures, (iii) maximizing protein sequence coverage in mass spectrometric analysis for detection of glycation sites, and (iv) development of bioinformatics tools for prediction of protein glycation sites. Protein glycation studies have important applications in biology, ageing and translational medicine - particularly on studies of obesity, diabetes, cardiovascular disease, renal failure, neurological disorders and cancer. Mass spectrometric analysis of glycated proteins has yet to find widespread use clinically. Future use in health screening, disease diagnosis and therapeutic monitoring, and drug and functional food development is expected. A protocol for high resolution mass spectrometry proteomics of glycated proteins is given.

Quantifying ice loss in the eastern Himalayas since 1974 using declassified spy satellite imagery

NASA Astrophysics Data System (ADS)

Maurer, Joshua M.; Rupper, Summer B.; Schaefer, Joerg M.

2016-09-01

Himalayan glaciers are important natural resources and climate indicators for densely populated regions in Asia. Remote sensing methods are vital for evaluating glacier response to changing climate over the vast and rugged Himalayan region, yet many platforms capable of glacier mass balance quantification are somewhat temporally limited due to typical glacier response times. We here rely on declassified spy satellite imagery and ASTER data to quantify surface lowering, ice volume change, and geodetic mass balance during 1974-2006 for glaciers in the eastern Himalayas, centered on the Bhutan-China border. The wide range of glacier types allows for the first mass balance comparison between clean, debris, and lake-terminating (calving) glaciers in the region. Measured glaciers show significant ice loss, with an estimated mean annual geodetic mass balance of -0.13 ± 0.06 m w.e. yr-1 (meters of water equivalent per year) for 10 clean-ice glaciers, -0.19 ± 0.11 m w.e. yr-1 for 5 debris-covered glaciers, -0.28 ± 0.10 m w.e. yr-1 for 6 calving glaciers, and -0.17 ± 0.05 m w.e. yr-1 for all glaciers combined. Contrasting hypsometries along with melt pond, ice cliff, and englacial conduit mechanisms result in statistically similar mass balance values for both clean-ice and debris-covered glacier groups. Calving glaciers comprise 18 % (66 km2) of the glacierized area yet have contributed 30 % (-0.7 km3) to the total ice volume loss, highlighting the growing relevance of proglacial lake formation and associated calving for the future ice mass budget of the Himalayas as the number and size of glacial lakes increase.

The Discrepancy between Einstein Mass and Dynamical Mass for SIS and Power-law Mass Models

NASA Astrophysics Data System (ADS)

Li, Rui; Wang, Jiancheng; Shu, Yiping; Xu, Zhaoyi

2018-03-01

We investigate the discrepancy between the two-dimensional projected lensing mass and the dynamical mass for an ensemble of 97 strong gravitational lensing systems discovered by the Sloan Lens ACS Survey, the BOSS Emission-Line Lens Survey (BELLS), and the BELLS for GALaxy-Lyα EmitteR sYstems Survey. We fit the lensing data to obtain the Einstein mass and use the velocity dispersion of the lensing galaxies provided by the Sloan Digital Sky Survey to get the projected dynamical mass within the Einstein radius by assuming the power-law mass approximation. The discrepancy is found to be obvious and quantified by Bayesian analysis. For the singular isothermal sphere mass model, we obtain that the Einstein mass is 20.7% more than the dynamical mass, and the discrepancy increases with the redshift of the lensing galaxies. For the more general power-law mass model, the discrepancy still exists within a 1σ credible region. We suspect the main reason for this discrepancy is mass contamination, including all invisible masses along the line of sight. In addition, the measurement errors and the approximation of the mass models could also contribute to the discrepancy.

Eruption mass estimation using infrasound waveform inversion and ash and gas measurements: Evaluation at Sakurajima Volcano, Japan [Comparison of eruption masses at Sakurajima Volcano, Japan calculated by infrasound waveform inversion and ground-based sampling

DOE PAGES

Fee, David; Izbekov, Pavel; Kim, Keehoon; ...

2017-10-09

Eruption mass and mass flow rate are critical parameters for determining the aerial extent and hazard of volcanic emissions. Infrasound waveform inversion is a promising technique to quantify volcanic emissions. Although topography may substantially alter the infrasound waveform as it propagates, advances in wave propagation modeling and station coverage permit robust inversion of infrasound data from volcanic explosions. The inversion can estimate eruption mass flow rate and total eruption mass if the flow density is known. However, infrasound-based eruption flow rates and mass estimates have yet to be validated against independent measurements, and numerical modeling has only recently been appliedmore » to the inversion technique. Furthermore we present a robust full-waveform acoustic inversion method, and use it to calculate eruption flow rates and masses from 49 explosions from Sakurajima Volcano, Japan.« less

Eruption mass estimation using infrasound waveform inversion and ash and gas measurements: Evaluation at Sakurajima Volcano, Japan [Comparison of eruption masses at Sakurajima Volcano, Japan calculated by infrasound waveform inversion and ground-based sampling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fee, David; Izbekov, Pavel; Kim, Keehoon

Eruption mass and mass flow rate are critical parameters for determining the aerial extent and hazard of volcanic emissions. Infrasound waveform inversion is a promising technique to quantify volcanic emissions. Although topography may substantially alter the infrasound waveform as it propagates, advances in wave propagation modeling and station coverage permit robust inversion of infrasound data from volcanic explosions. The inversion can estimate eruption mass flow rate and total eruption mass if the flow density is known. However, infrasound-based eruption flow rates and mass estimates have yet to be validated against independent measurements, and numerical modeling has only recently been appliedmore » to the inversion technique. Furthermore we present a robust full-waveform acoustic inversion method, and use it to calculate eruption flow rates and masses from 49 explosions from Sakurajima Volcano, Japan.« less

Analysis of plant nucleotide sugars by hydrophilic interaction liquid chromatography and tandem mass spectrometry.

PubMed

Ito, Jun; Herter, Thomas; Baidoo, Edward E K; Lao, Jeemeng; Vega-Sánchez, Miguel E; Michelle Smith-Moritz, A; Adams, Paul D; Keasling, Jay D; Usadel, Björn; Petzold, Christopher J; Heazlewood, Joshua L

2014-03-01

Understanding the intricate metabolic processes involved in plant cell wall biosynthesis is limited by difficulties in performing sensitive quantification of many involved compounds. Hydrophilic interaction liquid chromatography is a useful technique for the analysis of hydrophilic metabolites from complex biological extracts and forms the basis of this method to quantify plant cell wall precursors. A zwitterionic silica-based stationary phase has been used to separate hydrophilic nucleotide sugars involved in cell wall biosynthesis from milligram amounts of leaf tissue. A tandem mass spectrometry operating in selected reaction monitoring mode was used to quantify nucleotide sugars. This method was highly repeatable and quantified 12 nucleotide sugars at low femtomole quantities, with linear responses up to four orders of magnitude to several 100pmol. The method was also successfully applied to the analysis of purified leaf extracts from two model plant species with variations in their cell wall sugar compositions and indicated significant differences in the levels of 6 out of 12 nucleotide sugars. The plant nucleotide sugar extraction procedure was demonstrated to have good recovery rates with minimal matrix effects. The approach results in a significant improvement in sensitivity when applied to plant samples over currently employed techniques. Copyright © 2013 Elsevier Inc. All rights reserved.

Assessment and Optimization of the Accuracy of an Aircraft-Based Technique Used to Quantify Greenhouse Gas Emission Rates from Point Sources

NASA Astrophysics Data System (ADS)

Shepson, P. B.; Lavoie, T. N.; Kerlo, A. E.; Stirm, B. H.

2016-12-01

Understanding the contribution of anthropogenic activities to atmospheric greenhouse gas concentrations requires an accurate characterization of emission sources. Previously, we have reported the use of a novel aircraft-based mass balance measurement technique to quantify greenhouse gas emission rates from point and area sources, however, the accuracy of this approach has not been evaluated to date. Here, an assessment of method accuracy and precision was performed by conducting a series of six aircraft-based mass balance experiments at a power plant in southern Indiana and comparing the calculated CO2 emission rates to the reported hourly emission measurements made by continuous emissions monitoring systems (CEMS) installed directly in the exhaust stacks at the facility. For all flights, CO2 emissions were quantified before CEMS data were released online to ensure unbiased analysis. Additionally, we assess the uncertainties introduced to the final emission rate caused by our analysis method, which employs a statistical kriging model to interpolate and extrapolate the CO2 fluxes across the flight transects from the ground to the top of the boundary layer. Subsequently, using the results from these flights combined with the known emissions reported by the CEMS, we perform an inter-model comparison of alternative kriging methods to evaluate the performance of the kriging approach.

Visualization and dissemination of multidimensional proteomics data comparing protein abundance during Caenorhabditis elegans development.

PubMed

Riffle, Michael; Merrihew, Gennifer E; Jaschob, Daniel; Sharma, Vagisha; Davis, Trisha N; Noble, William S; MacCoss, Michael J

2015-11-01

Regulation of protein abundance is a critical aspect of cellular function, organism development, and aging. Alternative splicing may give rise to multiple possible proteoforms of gene products where the abundance of each proteoform is independently regulated. Understanding how the abundances of these distinct gene products change is essential to understanding the underlying mechanisms of many biological processes. Bottom-up proteomics mass spectrometry techniques may be used to estimate protein abundance indirectly by sequencing and quantifying peptides that are later mapped to proteins based on sequence. However, quantifying the abundance of distinct gene products is routinely confounded by peptides that map to multiple possible proteoforms. In this work, we describe a technique that may be used to help mitigate the effects of confounding ambiguous peptides and multiple proteoforms when quantifying proteins. We have applied this technique to visualize the distribution of distinct gene products for the whole proteome across 11 developmental stages of the model organism Caenorhabditis elegans. The result is a large multidimensional dataset for which web-based tools were developed for visualizing how translated gene products change during development and identifying possible proteoforms. The underlying instrument raw files and tandem mass spectra may also be downloaded. The data resource is freely available on the web at http://www.yeastrc.org/wormpes/ . Graphical Abstract ᅟ.

Quantification of Au Nanoparticle Biouptake and Distribution to Freshwater Algae Using Single Cell - ICP-MS.

PubMed

Merrifield, R C; Stephan, C; Lead, J R

2018-02-20

Quantifying metal and nanoparticle (NP) biouptake and distribution on an individual cellular basis has previously been impossible, given available techniques which provide qualitative data that are laborious to acquire and prone to artifacts. Quantifying metal and metal NP uptake and loss processes in environmental organisms will lead to mechanistic understanding of biouptake and improved understanding of potential hazards and risks of metals and NPs. In this work, we present a new technique, single cell inductively coupled plasma mass spectrometry (SC-ICP-MS), which allows quantification of metal concentrations on an individual cell basis down to the attogram (ag) per cell level. We present data validating the novel method, along with the mass of metal per cell. Finally, we use SC-ICP-MS, with ancillary cell counting methods, to quantify the biouptake and strong sorption and distribution of both dissolved Au and Au NPs in a freshwater alga (Cyptomonas ovate). The data suggests differences between dissolved and NP uptake and loss. In the case of NPs, there was a dose and time dependent uptake, but individual cellular variations; at the highest realistic exposure conditions used in this study up to 40-50% of cells contained NPs, while 50-60% of cells did not.

Visualization and Dissemination of Multidimensional Proteomics Data Comparing Protein Abundance During Caenorhabditis elegans Development

NASA Astrophysics Data System (ADS)

Riffle, Michael; Merrihew, Gennifer E.; Jaschob, Daniel; Sharma, Vagisha; Davis, Trisha N.; Noble, William S.; MacCoss, Michael J.

2015-11-01

Regulation of protein abundance is a critical aspect of cellular function, organism development, and aging. Alternative splicing may give rise to multiple possible proteoforms of gene products where the abundance of each proteoform is independently regulated. Understanding how the abundances of these distinct gene products change is essential to understanding the underlying mechanisms of many biological processes. Bottom-up proteomics mass spectrometry techniques may be used to estimate protein abundance indirectly by sequencing and quantifying peptides that are later mapped to proteins based on sequence. However, quantifying the abundance of distinct gene products is routinely confounded by peptides that map to multiple possible proteoforms. In this work, we describe a technique that may be used to help mitigate the effects of confounding ambiguous peptides and multiple proteoforms when quantifying proteins. We have applied this technique to visualize the distribution of distinct gene products for the whole proteome across 11 developmental stages of the model organism Caenorhabditis elegans. The result is a large multidimensional dataset for which web-based tools were developed for visualizing how translated gene products change during development and identifying possible proteoforms. The underlying instrument raw files and tandem mass spectra may also be downloaded. The data resource is freely available on the web at http://www.yeastrc.org/wormpes/.

Glycan reductive isotope labeling for quantitative glycomics.

PubMed

Xia, Baoyun; Feasley, Christa L; Sachdev, Goverdhan P; Smith, David F; Cummings, Richard D

2009-04-15

Many diseases and disorders are characterized by quantitative and/or qualitative changes in complex carbohydrates. Mass spectrometry methods show promise in monitoring and detecting these important biological changes. Here we report a new glycomics method, termed glycan reductive isotope labeling (GRIL), where free glycans are derivatized by reductive amination with the differentially coded stable isotope tags [(12)C(6)]aniline and [(13)C(6)]aniline. These dual-labeled aniline-tagged glycans can be recovered by reverse-phase chromatography and can be quantified based on ultraviolet (UV) absorbance and relative ion abundances. Unlike previously reported isotopically coded reagents for glycans, GRIL does not contain deuterium, which can be chromatographically resolved. Our method shows no chromatographic resolution of differentially labeled glycans. Mixtures of differentially tagged glycans can be directly compared and quantified using mass spectrometric techniques. We demonstrate the use of GRIL to determine relative differences in glycan amount and composition. We analyze free glycans and glycans enzymatically or chemically released from a variety of standard glycoproteins, as well as human and mouse serum glycoproteins, using this method. This technique allows linear relative quantitation of glycans over a 10-fold concentration range and can accurately quantify sub-picomole levels of released glycans, providing a needed advancement in the field of glycomics.

GLYCAN REDUCTIVE ISOTOPE LABELING (GRIL) FOR QUANTITATIVE GLYCOMICS

PubMed Central

Xia, Baoyun; Feasley, Christa L.; Sachdev, Goverdhan P.; Smith, David F.; Cummings, Richard D.

2009-01-01

Many diseases and disorders are characterized by quantitative and/or qualitative changes in complex carbohydrates. Mass spectrometry methods show promise in monitoring and detecting these important biological changes. Here we report a new glycomics method, termed Glycan Reductive Isotope Labeling (GRIL), where free glycans are derivatized by reductive amination with the differentially coded stable isotope tags [12C6]-aniline and [13C6]-aniline. These dual-labeled aniline-tagged glycans can be recovered by reversed-phase chromatography and quantified based on UV-absorbance and relative ion abundances. Unlike previously reported isotopically coded reagents for glycans, GRIL does not contain deuterium, which can be chromatographically resolved. Our method shows no chromatographic resolution of differentially labeled glycans. Mixtures of differentially tagged glycans can be directly compared and quantified using mass spectrometric techniques. We demonstrate the use of GRIL to determine relative differences in glycan amount and composition. We analyze free glycans and glycans enzymatically or chemically released from a variety of standard glycoproteins, as well as human and mouse serum glycoproteins using this method. This technique allows for linear, relative quantitation of glycans over a 10-fold concentration range and can accurately quantify sub-picomole levels of released glycans, providing a needed advancement in the field of Glycomics. PMID:19454239

The role of intra-NAPL diffusion on mass transfer from MGP residuals

NASA Astrophysics Data System (ADS)

Shafieiyoun, Saeid; Thomson, Neil R.

2018-06-01

An experimental and computational study was performed to investigate the role of multi-component intra-NAPL diffusion on NAPL-water mass transfer. Molecular weight and the NAPL component concentrations were determined to be the most important parameters affecting intra-NAPL diffusion coefficients. Four NAPLs with different viscosities but the same quantified mass were simulated. For a spherical NAPL body, a combination of NAPL properties and interphase mass transfer rate can result in internal diffusion limitations. When the main intra-NAPL diffusion coefficients are in the range of self-diffusion coefficients (10-5 to 10-6 cm2/s), dissolution is not limited by internal diffusion except for high mass transfer rate coefficients (>180 cm/day). For a complex and relatively high viscous NAPL (>50 g/(cm s)), smaller intra-NAPL diffusion coefficients (<10-8) are expected and even low mass transfer rate coefficients ( 6 cm/day) can result in diffusion-limited dissolution.

Amino acids rather than glucose account for the majority of cell mass in proliferating mammalian cells

PubMed Central

Hosios, Aaron M.; Hecht, Vivian C.; Danai, Laura V.; Johnson, Marc O.; Rathmell, Jeffrey C.; Steinhauser, Matthew L.; Manalis, Scott R.; Vander Heiden, Matthew G.

2016-01-01

Cells must duplicate their mass in order to proliferate. Glucose and glutamine are the major nutrients consumed by proliferating mammalian cells, but the extent to which these and other nutrients contribute to cell mass is unknown. We quantified the fraction of cell mass derived from different nutrients and find that the majority of carbon mass in cells is derived from other amino acids, which are consumed at much lower rates than glucose and glutamine. While glucose carbon has diverse fates, glutamine contributes most to protein, and this suggests that glutamine’s ability to replenish TCA cycle intermediates (anaplerosis) is primarily used for amino acid biosynthesis. These findings demonstrate that rates of nutrient consumption are indirectly associated with mass accumulation and suggest that high rates of glucose and glutamine consumption support rapid cell proliferation beyond providing carbon for biosynthesis. PMID:26954548

The role of environment in the observed Fundamental Plane of radio Active Galactic Nuclei

NASA Astrophysics Data System (ADS)

Shabala, Stanislav S.

2018-05-01

The optical Fundamental Plane of black hole activity relates radio continuum luminosity of Active Galactic Nuclei to [O III] luminosity and black hole mass. We examine the environments of low redshift (z < 0.2) radio-selected AGN, quantified through galaxy clustering, and find that halo mass provides similar mass scalings to black hole mass in the Fundamental Plane relations. AGN properties are strongly environment-dependent: massive haloes are more likely to host radiatively inefficient (low-excitation) radio AGN, as well as a higher fraction of radio luminous, extended sources. These AGN populations have different radio - optical luminosity scaling relations, and the observed mass scalings in the parent AGN sample are built up by combining populations preferentially residing in different environments. Accounting for environment-driven selection effects, the optical Fundamental Plane of supermassive black holes is likely to be mass-independent, as predicted by models.

Trace and surface analysis of ceramic layers of solid oxide fuel cells by mass spectrometry.

PubMed

Becker, J S; Breuer, U; Westheide, J; Saprykin, A I; Holzbrecher, H; Nickel, H; Dietze, H J

1996-06-01

For the trace analysis of impurities in thick ceramic layers of a solid oxide fuel cell (SOFC) sensitive solid-state mass spectrometric methods, such as laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) and radiofrequency glow discharge mass spectrometry (rf-GDMS) have been developed and used. In order to quantify the analytical results of LA-ICP-MS, the relative sensitivity coefficients of elements in a La(0.6)Sr(0.35)MnO(3) matrix have been determined using synthetic standards. Secondary ion mass spectrometry (SIMS) - as a surface analytical method - has been used to characterize the element distribution and diffusion profiles of matrix elements on the interface of a perovskite/Y-stabilized ZrO(2) layer. The application of different mass spectrometric methods for process control in the preparation of ceramic layers for the SOFC is described.

xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry.

PubMed

Walzthoeni, Thomas; Joachimiak, Lukasz A; Rosenberger, George; Röst, Hannes L; Malmström, Lars; Leitner, Alexander; Frydman, Judith; Aebersold, Ruedi

2015-12-01

Chemical cross-linking in combination with mass spectrometry generates distance restraints of amino acid pairs in close proximity on the surface of native proteins and protein complexes. In this study we used quantitative mass spectrometry and chemical cross-linking to quantify differences in cross-linked peptides obtained from complexes in spatially discrete states. We describe a generic computational pipeline for quantitative cross-linking mass spectrometry consisting of modules for quantitative data extraction and statistical assessment of the obtained results. We used the method to detect conformational changes in two model systems: firefly luciferase and the bovine TRiC complex. Our method discovers and explains the structural heterogeneity of protein complexes using only sparse structural information.

Study of mass and momentum transfer in diesel sprays based on X-ray mass distribution measurements and on a theoretical derivation

NASA Astrophysics Data System (ADS)

Desantes, J. M.; Salvador, F. J.; López, J. J.; de La Morena, J.

2011-02-01

In this paper, a research aimed at quantifying mass and momentum transfer in the near-nozzle field of diesel sprays injected into stagnant ambient air is reported. The study combines X-ray measurements for two different nozzles and axial positions, which provide mass distributions in the spray, with a theoretical model based on momentum flux conservation, which was previously validated. This investigation has allowed the validation of Gaussian profiles for local fuel concentration and velocity near the nozzle exit, as well as the determination of Schmidt number at realistic diesel spray conditions. This information could be very useful for those who are interested in spray modeling, especially at high-pressure injection conditions.

Central stellar mass deficits of early-type galaxies

NASA Astrophysics Data System (ADS)

Tsige Dullo, Bililign; Graham, Alister

2016-01-01

The centers of giant galaxies display stellar mass deficits (Mdef) which are thought to be a signature left by inspiraling supermassive black holes (SMBHs) from pre-merged galaxies. We quantify these deficits using the core-Sérsic model for the largest ever sample of early-type galaxies and find Mdef ˜ 0.5 to 4 MBH (SMBH mass). We find that lenticular disc galaxies with bulge magnitudes MV ≤ -21.0 mag also have central stellar deficits, suggesting that their bulges may have formed from major merger events while their surroundingdisc was subsequently built up, perhaps via cold gas accretion scenarios. Interestingly, these bulges have sizes and mass densities comparable to the compact galaxies found at z ˜ 1.5 to 2.

Validity and reliability of the session-RPE method for quantifying training load in karate athletes.

PubMed

Tabben, M; Tourny, C; Haddad, M; Chaabane, H; Chamari, K; Coquart, J B

2015-04-24

To test the construct validity and reliability of the session rating of perceived exertion (sRPE) method by examining the relationship between RPE and physiological parameters (heart rate: HR and blood lactate concentration: [La --] ) and the correlations between sRPE and two HR--based methods for quantifying internal training load (Banister's method and Edwards's method) during karate training camp. Eighteen elite karate athletes: ten men (age: 24.2 ± 2.3 y, body mass: 71.2 ± 9.0 kg, body fat: 8.2 ± 1.3% and height: 178 ± 7 cm) and eight women (age: 22.6 ± 1.2 y, body mass: 59.8 ± 8.4 kg, body fat: 20.2 ± 4.4%, height: 169 ± 4 cm) were included in the study. During training camp, subjects participated in eight karate--training sessions including three training modes (4 tactical--technical, 2 technical--development, and 2 randori training), during which RPE, HR, and [La -- ] were recorded. Significant correlations were found between RPE and physiological parameters (percentage of maximal HR: r = 0.75, 95% CI = 0.64--0.86; [La --] : r = 0.62, 95% CI = 0.49--0.75; P < 0.001). Moreover, individual sRPE was significantly correlated with two HR--based methods for quantifying internal training load ( r = 0.65--0.95; P < 0.001). The sRPE method showed the high reliability of the same intensity across training sessions (Cronbach's α = 0.81, 95% CI = 0.61--0.92). This study demonstrates that the sRPE method is valid for quantifying internal training load and intensity in karate.

Forensic Drug Identification, Confirmation, and Quantification Using Fully Integrated Gas Chromatography with Fourier Transform Infrared and Mass Spectrometric Detection (GC-FT-IR-MS).

PubMed

Lanzarotta, Adam; Lorenz, Lisa; Voelker, Sarah; Falconer, Travis M; Batson, JaCinta S

2018-05-01

This manuscript is a continuation of a recent study that described the use of fully integrated gas chromatography with direct deposition Fourier transform infrared detection and mass spectrometric detection (GC-FT-IR-MS) to identify and confirm the presence of sibutramine and AB-FUBINACA. The purpose of the current study was to employ the GC-FT-IR portion of the same instrument to quantify these compounds, thereby demonstrating the ability to identify, confirm, and quantify drug substances using a single GC-FT-IR-MS unit. The performance of the instrument was evaluated by comparing quantitative analytical figures of merit to those measured using an established, widely employed method for quantifying drug substances, high performance liquid chromatography with ultraviolet detection (HPLC-UV). The results demonstrated that GC-FT-IR was outperformed by HPLC-UV with regard to sensitivity, precision, and linear dynamic range (LDR). However, sibutramine and AB-FUBINACA concentrations measured using GC-FT-IR were not significantly different at the 95% confidence interval compared to those measured using HPLC-UV, which demonstrates promise for using GC-FT-IR as a semi-quantitative tool at the very least. The most significant advantage of GC-FT-IR compared to HPLC-UV is selectivity; a higher level of confidence regarding the identity of the analyte being quantified is achieved using GC-FT-IR. Additional advantages of using a single GC-FT-IR-MS instrument for identification, confirmation, and quantification are efficiency, increased sample throughput, decreased consumption of laboratory resources (solvents, chemicals, consumables, etc.), and thus cost.

Quantifying the mass loss of peripheral Greenland glaciers and ice caps (1958-2014).

NASA Astrophysics Data System (ADS)

Noël, Brice; van de Berg, Willem Jan; Machguth, Horst; van den Broeke, Michiel

2016-04-01

Since the 2000s, mass loss from Greenland peripheral glaciers and ice caps (GICs) has accelerated, becoming an important contributor to sea level rise. Under continued warming throughout the 21st century, GICs might yield up to 7.5 to 11 mm sea level rise, with increasing dominance of surface runoff at the expense of ice discharge. However, despite multiple observation campaigns, little remains known about the contribution of GICs to total Greenland mass loss. Furthermore, the relatively coarse resolutions in regional climate models, i.e. 5 km to 20 km, fail to represent the small scale patterns of surface mass balance (SMB) components over these topographically complex regions including also narrow valley glaciers. Here, we present a novel approach to quantify the contribution of GICs to surface melt and runoff, based on an elevation dependent downscaling method. GICs daily SMB components at 1 km resolution are obtained by statistically downscaling the outputs of RACMO2.3 at 11 km resolution to a down-sampled version of the GIMP DEM for the period 1958-2014. This method has recently been successfully validated over the Greenland ice sheet and is now applied to GICs. In this study, we first evaluate the 1 km daily downscaled GICs SMB against a newly available and comprehensive dataset of ablation stake measurements. Then, we investigate present-day trends of meltwater production and SMB for different regions and estimate GICs contribution to total Greenland mass loss. These data are considered valuable for model evaluation and prediction of future sea level rise.

Application of targeted quantitative proteomics analysis in human cerebrospinal fluid using a liquid chromatography matrix-assisted laser desorption/ionization time-of-flight tandem mass spectrometer (LC MALDI TOF/TOF) platform.

PubMed

Pan, Sheng; Rush, John; Peskind, Elaine R; Galasko, Douglas; Chung, Kathryn; Quinn, Joseph; Jankovic, Joseph; Leverenz, James B; Zabetian, Cyrus; Pan, Catherine; Wang, Yan; Oh, Jung Hun; Gao, Jean; Zhang, Jianpeng; Montine, Thomas; Zhang, Jing

2008-02-01

Targeted quantitative proteomics by mass spectrometry aims to selectively detect one or a panel of peptides/proteins in a complex sample and is particularly appealing for novel biomarker verification/validation because it does not require specific antibodies. Here, we demonstrated the application of targeted quantitative proteomics in searching, identifying, and quantifying selected peptides in human cerebrospinal spinal fluid (CSF) using a matrix-assisted laser desorption/ionization time-of-flight tandem mass spectrometer (MALDI TOF/TOF)-based platform. The approach involved two major components: the use of isotopic-labeled synthetic peptides as references for targeted identification and quantification and a highly selective mass spectrometric analysis based on the unique characteristics of the MALDI instrument. The platform provides high confidence for targeted peptide detection in a complex system and can potentially be developed into a high-throughput system. Using the liquid chromatography (LC) MALDI TOF/TOF platform and the complementary identification strategy, we were able to selectively identify and quantify a panel of targeted peptides in the whole proteome of CSF without prior depletion of abundant proteins. The effectiveness and robustness of the approach associated with different sample complexity, sample preparation strategies, as well as mass spectrometric quantification were evaluated. Other issues related to chromatography separation and the feasibility for high-throughput analysis were also discussed. Finally, we applied targeted quantitative proteomics to analyze a subset of previously identified candidate markers in CSF samples of patients with Parkinson's disease (PD) at different stages and Alzheimer's disease (AD) along with normal controls.

Measurement of tamsulosin in human serum by liquid chromatography-tandem mass spectrometry.

PubMed

Upreti, Rita; Homer, Natalie Z M; Naredo, Gregorio; Cobice, Diego F; Hughes, Katherine A; Stewart, Laurence H; Walker, Brian R; Andrew, Ruth

2013-07-01

A simple, sensitive and robust method to extract tamsulosin from human serum, and quantify by liquid chromatography-tandem mass spectrometry (LC-MS/MS) was developed and validated and is applicable as a measure of compliance in clinical research. Tamsulosin was extracted from human serum (100μL) via liquid-liquid extraction with methyl tert-butyl ether (2mL) following dilution with 0.1M ammonium hydroxide (100μL), achieving 99.9% analyte recovery. Internal standard, d9-finasteride, was synthesised in-house. Analyte and internal standard were separated on an Ascentis(®) Express C18 (100mm×3mm, 2.7μm) column using a gradient elution with mobile phases methanol and 2mM aqueous ammonium acetate (5:95, v/v). Total run-time was 6min. Tamsulosin was quantified using a triple quadrupole mass spectrometer operated in multi-reaction-monitoring (MRM) mode using positive electrospray ionisation. Mass transitions monitored for quantitation were: tamsulosin m/z 409→228 and d9-finasteride m/z 382→318, with the structural formulae of ions confirmed by Fourier transform ion cyclotron resonance mass spectrometry (within 10ppm). The limit of quantitation was 0.2ng/mL, and the method was validated in the linear range 0.2-50ng/mL with acceptable inter- and intra-assay precision and accuracy and stability suitable for routine laboratory practice. The method was successfully applied to samples taken from research volunteers in a clinical study of benign prostatic hyperplasia. Copyright © 2013 The Authors. Published by Elsevier B.V. All rights reserved.

A Massive Star Census of the Starburst Cluster R136

NASA Astrophysics Data System (ADS)

Crowther, Paul

2011-10-01

We propose to carry out a comprehensive census of the most massive stars in the central parsec {4"} of the starburst cluster, R136, which powers the Tarantula Nebula in the LMC. R136 is both sufficiently massive that the upper mass function is richly populated and young enough that its most massive stars have yet to explode as supernovae. The identification of very massive stars in R136, up to 300 solar masses, raises general questions of star formation, binarity and feedback in young massive clusters. The proposed STIS spectral survey of 36 stars more massive than 50 solar masses within R136 is ground-breaking, of legacy value, and is specifically tailored to a} yield physical properties; b} detect the majority of binaries by splitting observations between Cycles 19 and 20; c} measure rotational velocities, relevant for predictions of rotational mixing; d} quantify mass-loss properties for very massive stars; e} determine surface compositions; f} measure radial velocities, relevant for runaway stars and cluster dynamics; g} quantify radiative and mechanical feedback. This census will enable the mass function of very massive stars to be measured for the first time, as a result of incomplete and inadequate spectroscopy to date. It will also perfectly complement our Tarantula Survey, a ground-based VLT Large Programme, by including the most massive stars that are inaccessible to ground-based visual spectroscopy due to severe crowding. These surveys, together with existing integrated UV and optical studies will enable 30 Doradus to serve as a bona-fide template for unresolved extragalactic starburst regions.

A Massive Star Census of the Starburst Cluster R136

NASA Astrophysics Data System (ADS)

Crowther, Paul

2012-10-01

We propose to carry out a comprehensive census of the most massive stars in the central parsec {4"} of the starburst cluster, R136, which powers the Tarantula Nebula in the LMC. R136 is both sufficiently massive that the upper mass function is richly populated and young enough that its most massive stars have yet to explode as supernovae. The identification of very massive stars in R136, up to 300 solar masses, raises general questions of star formation, binarity and feedback in young massive clusters. The proposed STIS spectral survey of 36 stars more massive than 50 solar masses within R136 is ground-breaking, of legacy value, and is specifically tailored to a} yield physical properties; b} detect the majority of binaries by splitting observations between Cycles 19 and 20; c} measure rotational velocities, relevant for predictions of rotational mixing; d} quantify mass-loss properties for very massive stars; e} determine surface compositions; f} measure radial velocities, relevant for runaway stars and cluster dynamics; g} quantify radiative and mechanical feedback. This census will enable the mass function of very massive stars to be measured for the first time, as a result of incomplete and inadequate spectroscopy to date. It will also perfectly complement our Tarantula Survey, a ground-based VLT Large Programme, by including the most massive stars that are inaccessible to ground-based visual spectroscopy due to severe crowding. These surveys, together with existing integrated UV and optical studies will enable 30 Doradus to serve as a bona-fide template for unresolved extragalactic starburst regions.

Masses of Fluid for Cylindrical Tanks in Rock With Partial Uplift of Bottom Plate

PubMed Central

Taniguchi, Tomoyo; Katayama, Yukihiro

2016-01-01

This study proposes the use of a slice model consisting of a set of thin rectangular tanks for evaluating the masses of fluid contributing to the rocking motion of cylindrical tanks; the effective mass of fluid for rocking motion, that for rocking–bulging interaction, effective moment inertia of fluid for rocking motion and its centroid. They are mathematically or numerically quantified, normalized, tabulated, and depicted as functions of the aspect of tanks for different values of the ratio of the uplift width of the tank bottom plate to the diameter of tank for the designer's convenience. PMID:27303110

Trends in mass spectrometry instrumentation for proteomics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Smith, Richard D.

2002-12-01

Mass spectrometry has become a primary tool for proteomics due to its capabilities for rapid and sensitive protein identification and quantitation. It is now possible to identify thousands of proteins from microgram sample quantities in a single day and to quantify relative protein abundances. However, the needs for increased capabilities for proteome measurements are immense and are now driving both new strategies and instrument advances. These developments include those based on integration with multi-dimensional liquid separations and high accuracy mass measurements, and promise more than order of magnitude improvements in sensitivity, dynamic range, and throughput for proteomic analyses in themore » near future.« less

Detecting and quantifying prions: Mass spectrometry-based approaches

USDA-ARS?s Scientific Manuscript database

Prions are novel pathogens that cause a set of rare fatal neurological diseases know as transmissible spongiform encephalopathies. Examples of these diseases include Creutzfeldt-Jakob disease, scrapie and chronic wasting disease. Prions are able to recruit a normal cellular prion protein and convert...

Assays without Borders | Office of Cancer Clinical Proteomics Research

Cancer.gov

CPTAC researchers, partner with international labs to demonstrate the ability of targeted mass spectrometry–based assays to reproducibly quantify human proteins across labs, countries and continents in a recently published journal article. In a landmark paper appearing in the Dec.

SearchGUI: A Highly Adaptable Common Interface for Proteomics Search and de Novo Engines.

PubMed

Barsnes, Harald; Vaudel, Marc

2018-05-25

Mass-spectrometry-based proteomics has become the standard approach for identifying and quantifying proteins. A vital step consists of analyzing experimentally generated mass spectra to identify the underlying peptide sequences for later mapping to the originating proteins. We here present the latest developments in SearchGUI, a common open-source interface for the most frequently used freely available proteomics search and de novo engines that has evolved into a central component in numerous bioinformatics workflows.

Method for determining aerosol particle size device for determining aerosol particle size

DOEpatents

Novick, Vincent J.

1998-01-01

A method for determining the mass median diameter D of particles contained in a fluid is provided wherein the data of the mass of a pre-exposed and then a post-exposed filter is mathematically combined with data concerning the pressure differential across the same filter before and then after exposure to a particle-laden stream. A device for measuring particle size is also provided wherein the device utilizes the above-method for mathematically combining the easily quantifiable data.

Method for determining aerosol particle size, device for determining aerosol particle size

DOEpatents

Novick, V.J.

1998-10-06

A method for determining the mass median diameter D of particles contained in a fluid is provided wherein the data of the mass of a pre-exposed and then a post-exposed filter is mathematically combined with data concerning the pressure differential across the same filter before and then after exposure to a particle-laden stream. A device for measuring particle size is also provided wherein the device utilizes the above-method for mathematically combining the easily quantifiable data. 2 figs.

Next Generation Safeguards Initiative research to determine the Pu mass in spent fuel assemblies: Purpose, approach, constraints, implementation, and calibration

NASA Astrophysics Data System (ADS)

Tobin, S. J.; Menlove, H. O.; Swinhoe, M. T.; Schear, M. A.

2011-10-01

The Next Generation Safeguards Initiative (NGSI) of the U.S. Department of Energy has funded a multi-lab/multi-university collaboration to quantify the plutonium mass in spent nuclear fuel assemblies and to detect the diversion of pins from them. The goal of this research effort is to quantify the capability of various non-destructive assay (NDA) technologies as well as to train a future generation of safeguards practitioners. This research is "technology driven" in the sense that we will quantify the capabilities of a wide range of safeguards technologies of interest to regulators and policy makers; a key benefit to this approach is that the techniques are being tested in a unified manner. When the results of the Monte Carlo modeling are evaluated and integrated, practical constraints are part of defining the potential context in which a given technology might be applied. This paper organizes the commercial spent fuel safeguard needs into four facility types in order to identify any constraints on the NDA system design. These four facility types are the following: future reprocessing plants, current reprocessing plants, once-through spent fuel repositories, and any other sites that store individual spent fuel assemblies (reactor sites are the most common facility type in this category). Dry storage is not of interest since individual assemblies are not accessible. This paper will overview the purpose and approach of the NGSI spent fuel effort and describe the constraints inherent in commercial fuel facilities. It will conclude by discussing implementation and calibration of measurement systems. This report will also provide some motivation for considering a couple of other safeguards concepts (base measurement and fingerprinting) that might meet the safeguards need but not require the determination of plutonium mass.

THE SYSTEMATICS OF STRONG LENS MODELING QUANTIFIED: THE EFFECTS OF CONSTRAINT SELECTION AND REDSHIFT INFORMATION ON MAGNIFICATION, MASS, AND MULTIPLE IMAGE PREDICTABILITY

DOE Office of Scientific and Technical Information (OSTI.GOV)

Johnson, Traci L.; Sharon, Keren, E-mail: tljohn@umich.edu

Until now, systematic errors in strong gravitational lens modeling have been acknowledged but have never been fully quantified. Here, we launch an investigation into the systematics induced by constraint selection. We model the simulated cluster Ares 362 times using random selections of image systems with and without spectroscopic redshifts and quantify the systematics using several diagnostics: image predictability, accuracy of model-predicted redshifts, enclosed mass, and magnification. We find that for models with >15 image systems, the image plane rms does not decrease significantly when more systems are added; however, the rms values quoted in the literature may be misleading asmore » to the ability of a model to predict new multiple images. The mass is well constrained near the Einstein radius in all cases, and systematic error drops to <2% for models using >10 image systems. Magnification errors are smallest along the straight portions of the critical curve, and the value of the magnification is systematically lower near curved portions. For >15 systems, the systematic error on magnification is ∼2%. We report no trend in magnification error with the fraction of spectroscopic image systems when selecting constraints at random; however, when using the same selection of constraints, increasing this fraction up to ∼0.5 will increase model accuracy. The results suggest that the selection of constraints, rather than quantity alone, determines the accuracy of the magnification. We note that spectroscopic follow-up of at least a few image systems is crucial because models without any spectroscopic redshifts are inaccurate across all of our diagnostics.« less

On the Skill of Balancing While Riding a Bicycle

PubMed Central

Cain, Stephen M.; Ashton-Miller, James A.; Perkins, Noel C.

2016-01-01

Humans have ridden bicycles for over 200 years, yet there are no continuous measures of how skill differs between novice and expert. To address this knowledge gap, we measured the dynamics of human bicycle riding in 14 subjects, half of whom were skilled and half were novice. Each subject rode an instrumented bicycle on training rollers at speeds ranging from 1 to 7 m/s. Steer angle and rate, steer torque, bicycle speed, and bicycle roll angle and rate were measured and steering power calculated. A force platform beneath the roller assembly measured the net force and moment that the bicycle, rider and rollers exerted on the floor, enabling calculations of the lateral positions of the system centers of mass and pressure. Balance performance was quantified by cross-correlating the lateral positions of the centers of mass and pressure. The results show that all riders exhibited similar balance performance at the slowest speed. However at higher speeds, the skilled riders achieved superior balance performance by employing more rider lean control (quantified by cross-correlating rider lean angle and bicycle roll angle) and less steer control (quantified by cross-correlating steer rate and bicycle roll rate) than did novice riders. Skilled riders also used smaller steering control input with less variation (measured by average positive steering power and standard deviations of steer angle and rate) and less rider lean angle variation (measured by the standard deviation of the rider lean angle) independent of speed. We conclude that the reduction in balance control input by skilled riders is not due to reduced balance demands but rather to more effective use of lean control to guide the center of mass via center of pressure movements. PMID:26910774

Using ATM laser altimetry to constrain surface mass balance estimates and supraglacial hydrology of the Greenland Ice Sheet

NASA Astrophysics Data System (ADS)

Studinger, M.; Medley, B.; Manizade, S.; Linkswiler, M. A.

2016-12-01

Repeat airborne laser altimetry measurements can provide large-scale field observations to better quantify spatial and temporal variability of surface processes contributing to seasonal elevation change and therefore surface mass balance. As part of NASA's Operation IceBridge the Airborne Topographic Mapper (ATM) laser altimeter measured the surface elevation of the Greenland Ice Sheet during spring (March - May) and fall (September - October) of 2015. Comparison of the two surveys reveals a general trend of thinning for outlet glaciers and for the ice sheet in a manner related to elevation and latitude. In contrast, some thickening is observed on the west (but not on the east) side of the ice divide above 2200 m elevation in the southern half, below latitude 69°N.The observed magnitude and spatial patterns of the summer melt signal can be utilized as input into ice sheet models and for validating reanalysis of regional climate models such as RACMO and MAR. We use seasonal anomalies in MERRA-2 climate fields (temperature, precipitation) to understand the observed spatial signal in seasonal change. Aside from surface elevation change, runoff from meltwater pooling in supraglacial lakes and meltwater channels accounts for at least half of the total mass loss. The ability of the ATM laser altimeters to image glacial hydrological features in 3-D and determine the depth of supraglacial lakes could be used for process studies and for quantifying melt processes over large scales. The 1-meter footprint diameter of ATM laser on the surface, together with a high shot density, allows for the production of large-scale, high-resolution, geodetic quality DEMs (50 x 50 cm) suitable for fine-scale glacial hydrology research and as input to hydrological models quantifying runoff.

A direct passive method for measuring water and contaminant fluxes in porous media

NASA Astrophysics Data System (ADS)

Hatfield, Kirk; Annable, Michael; Cho, Jaehyun; Rao, P. S. C.; Klammler, Harald

2004-12-01

This paper introduces a new direct method for measuring water and contaminant fluxes in porous media. The method uses a passive flux meter (PFM), which is essentially a self-contained permeable unit properly sized to fit tightly in a screened well or boring. The meter is designed to accommodate a mixed medium of hydrophobic and/or hydrophilic permeable sorbents, which retain dissolved organic/inorganic contaminants present in the groundwater flowing passively through the meter. The contaminant mass intercepted and retained on the sorbent is used to quantify cumulative contaminant mass flux. The sorptive matrix is also impregnated with known amounts of one or more water soluble 'resident tracers'. These tracers are displaced from the sorbent at rates proportional to the groundwater flux; hence, in the current meter design, the resident tracers are used to quantify cumulative groundwater flux. Theory is presented and quantitative tools are developed to interpret the water flux from tracers possessing linear and nonlinear elution profiles. The same theory is extended to derive functional relationships useful for quantifying cumulative contaminant mass flux. To validate theory and demonstrate the passive flux meter, results of multiple box-aquifer experiments are presented and discussed. From these experiments, it is seen that accurate water flux measurements are obtained when the tracer used in calculations resides in the meter at levels representing 20 to 70 percent of the initial condition. 2,4-Dimethyl-3-pentanol (DMP) is used as a surrogate groundwater contaminant in the box aquifer experiments. Cumulative DMP fluxes are measured within 5% of known fluxes. The accuracy of these estimates generally increases with the total volume of water intercepted.

Measurements of print-through in graphite fiber epoxy composites

NASA Technical Reports Server (NTRS)

Jaworske, Donald A.; Jeunnette, Timothy T.; Anzic, Judith M.

1989-01-01

High-reflectance accurate-contour mirrors are needed for solar dynamic space power systems. Graphite fiber epoxy composites are attractive candidates for such applications owing to their high modulus, near-zero coefficient of thermal expansion, and low mass. However, mirrors prepared from graphite fiber epoxy composite substrates often exhibit print-through, a distortion of the surface, which causes a loss in solar specular reflectance. Efforts to develop mirror substrates without print-through distortion require a means of quantifying print-through. Methods have been developed to quantify the degree of print-through in graphite fiber epoxy composite specimens using surface profilometry.

Hydrogen sulphide in human nasal air quantified using thermal desorption and selected ion flow tube mass spectrometry.

PubMed

Wondimu, Taddese; Wang, Rui; Ross, Brian

2014-09-01

The discovery that hydrogen sulphide (H2S) acts as a gasotransmitter when present at very low concentrations (sub-parts per billion (ppbv)) has resulted in the need to quickly quantify trace amounts of the gas in complex biological samples. Selected ion flow tube mass spectrometry (SIFT-MS) is capable of real-time quantification of H2S but many SIFT-MS instruments lack sufficient sensitivity for this application. In this study we investigate the utility of combining thermal desorption with SIFT-MS for quantifying H2S in the 0.1-1 ppbv concentration range. Human orally or nasally derived breath, and background ambient air, were collected in sampling bags and dried by passing through CaCl2 and H2S pre-concentrated using a sorbent trap optimised for the capture of this gas. The absorbed H2S was then thermally desorbed and quantified by SIFT-MS. H2S concentrations in ambient air, nasal breath and oral breath collected from 10 healthy volunteers were 0.12  ±  0.02 (mean ± SD), 0.40  ±  0.11 and 3.1  ±  2.5 ppbv respectively, and in the oral cavity H2S, quantified by SIFT-MS without pre-concentration, was present at 13.5  ±  8.6 ppbv. The oral cavity H2S correlates well with oral breath H2S but not with nasal breath H2S, suggesting that oral breath H2S derives mainly from the oral cavity but nasal breath is likely pulmonary in origin. The successful quantification of such low concentrations of H2S in nasal air using a rapid analytical procedure paves the way for the straightforward analysis of H2S in breath and may assist in elucidating the role that H2S plays in biological systems.

Yield potential of pigeon pea cultivars

USDA-ARS?s Scientific Manuscript database

Yield potential of twelve vegetable pigeon pea (Cajanus cajun) cultivars was evaluated at two locations in eastern Kenya during 2012 and 2013 cropping years. Pigeon pea pod numbers, seeds per pod, seed mass, grain yield and shelling percentage were quantified in three replicated plots, arranged in a...

MEASUREMENT OF VOLATILE ORGANIC COMPOUNDS IN EXHALED BREATH AS COLLECTED IN EVACUATED ELECTROPOLISHED CANISTERS

EPA Science Inventory

A set of three complementary analytical methods were developed specifically for exhaled breath as collected in evacuated stainless steel canisters using gas chromatography - mass spectrometry detection. The first is a screening method to quantify the carbon dioxide component (gen...

EVALUATION OF EMISSIONS FROM THE OPEN BURNING OF LAND-CLEARING DEBRIS

EPA Science Inventory

The report identifies and quantifies a broad range of pollutants that are discharged during small-scale, simulated, open combustion of land-clearing debris and reports these emissions relative to the mass of material combusted. Two types of land-clearing debris (representing the ...

CHARACTERIZATION OF AIR EMISSIONS FROM THE SIMULATED OPEN COMBUSTION OF FIBERGLASS MATERIALS

EPA Science Inventory

The report identifies and quantifies a broad range of pollutants that are discharged during small-scale, simulated, open combustion of fiberglass, and reports these emissions relative to the mass of fiberglass material combusted. Two types of fiberglass materials (representing t...

Validation of a headspace trap gas chromatography and mass spectrometry method for the quantitative analysis of volatile compounds from degraded rapeseed oil.

PubMed

Sghaier, Lilia; Cordella, Christophe B Y; Rutledge, Douglas N; Watiez, Mickaël; Breton, Sylvie; Sassiat, Patrick; Thiebaut, Didier; Vial, Jérôme

2016-05-01

Due to lipid oxidation, off-flavors, characterized by a fishy odor, are emitted during the heating of rapeseed oil in a fryer and affect the flavor of rapeseed oil even at low concentrations. Thus, there is a need for analytical methods to identify and quantify these products. To study the headspace composition of degraded rapeseed oil, and more specifically the compounds responsible for the fishy odor, a headspace trap gas chromatography with mass spectrometry method was developed and validated. Six volatile compounds formed during the degradation of rapeseed oil were quantified: 1-penten-3-one, (Z)-4-heptenal, hexanal, nonanal, (E,E)-heptadienal, and (E)-2-heptenal. Validation using accuracy profiles allowed us to determine the valid ranges of concentrations for each compound, with acceptance limits of 40% and tolerance limits of 80%. This method was then successfully applied to real samples of degraded oils. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harman-Ware, Anne E.; Sykes, Robert; Peter, Gary F.

Terpenoids, naturally occurring compounds derived from isoprene units present in pine oleoresin, are a valuable source of chemicals used in solvents, fragrances, flavors, and have shown potential use as a biofuel. This paper describes a method to extract and analyze the terpenoids present in loblolly pine saplings and pine lighter wood. Various extraction solvents were tested over different times and temperatures. Samples were analyzed by pyrolysis-molecular beam mass spectrometry before and after extractions to monitor the extraction efficiency. The pyrolysis studies indicated that the optimal extraction method used a 1:1 hexane/acetone solvent system at 22°C for 1 h. Extracts frommore » the hexane/acetone experiments were analyzed using a low thermal mass modular accelerated column heater for fast-GC/FID analysis. The most abundant terpenoids from the pine samples were quantified, using standard curves, and included the monoterpenes, α- and β-pinene, camphene, and δ-carene. Sesquiterpenes analyzed included caryophyllene, humulene, and α-bisabolene. In conclusion, diterpenoid resin acids were quantified in derivatized extractions, including pimaric, isopimaric, levopimaric, palustric, dehydroabietic, abietic, and neoabietic acids.« less

Inorganic Salt Interference on CO2+ in Aerodyne AMS and ACSM Organic Aerosol Composition Studies.

PubMed

Pieber, Simone M; El Haddad, Imad; Slowik, Jay G; Canagaratna, Manjula R; Jayne, John T; Platt, Stephen M; Bozzetti, Carlo; Daellenbach, Kaspar R; Fröhlich, Roman; Vlachou, Athanasia; Klein, Felix; Dommen, Josef; Miljevic, Branka; Jiménez, José L; Worsnop, Douglas R; Baltensperger, Urs; Prévôt, André S H

2016-10-04

Aerodyne aerosol mass spectrometer (AMS) and Aerodyne aerosol chemical speciation monitor (ACSM) mass spectra are widely used to quantify organic aerosol (OA) elemental composition, oxidation state, and major environmental sources. The OA CO 2 + fragment is among the most important measurements for such analyses. Here, we show that a non-OA CO 2 + signal can arise from reactions on the particle vaporizer, ion chamber, or both, induced by thermal decomposition products of inorganic salts. In our tests (eight instruments, n = 29), ammonium nitrate (NH 4 NO 3 ) causes a median CO 2 + interference signal of +3.4% relative to nitrate. This interference is highly variable between instruments and with measurement history (percentiles P 10-90 = +0.4 to +10.2%). Other semi-refractory nitrate salts showed 2-10 times enhanced interference compared to that of NH 4 NO 3 , while the ammonium sulfate ((NH 4 ) 2 SO 4 ) induced interference was 3-10 times lower. Propagation of the CO 2 + interference to other ions during standard AMS and ACSM data analysis affects the calculated OA mass, mass spectra, molecular oxygen-to-carbon ratio (O/C), and f 44 . The resulting bias may be trivial for most ambient data sets but can be significant for aerosol with higher inorganic fractions (>50%), e.g., for low ambient temperatures, or laboratory experiments. The large variation between instruments makes it imperative to regularly quantify this effect on individual AMS and ACSM systems.

Quantification of 11-Nor-9-Carboxy-Δ9-Tetrahydrocannabinol in Human Oral Fluid by Gas Chromatography–Tandem Mass Spectrometry

PubMed Central

Barnes, Allan J.; Scheidweiler, Karl B.; Huestis, Marilyn A.

2015-01-01

A sensitive and specific method for the quantification of 11-nor-9-carboxy-Δ9-tetrahydrocannabinol (THCCOOH) in oral fluid collected with the Quantisal and Oral-Eze devices was developed and fully validated. Extracted analytes were derivatized with hexafluoroisopropanol and trifluoroacetic anhydride and quantified by gas chromatography–tandem mass spectrometry with negative chemical ionization. Standard curves, using linear least-squares regression with 1/x2 weighting were linear from 10 to 1000 ng/L with coefficients of determination >0.998 for both collection devices. Bias was 89.2%–112.6%, total imprecision 4.0%–5.1% coefficient of variation, and extraction efficiency >79.8% across the linear range for Quantisal-collected specimens. Bias was 84.6%–109.3%, total imprecision 3.6%–7.3% coefficient of variation, and extraction efficiency >92.6% for specimens collected with the Oral-Eze device at all 3 quality control concentrations (10, 120, and 750 ng/L). This effective high-throughput method reduces analysis time by 9 minutes per sample compared with our current 2-dimensional gas chromatography–mass spectrometry method and extends the capability of quantifying this important oral fluid analyte to gas chromatography–tandem mass spectrometry. This method was applied to the analysis of oral fluid specimens collected from individuals participating in controlled cannabis studies and will be effective for distinguishing passive environmental contamination from active cannabis smoking. PMID:24622724

A Novel Method for Profiling and Quantifying Short- and Medium-Chain Chlorinated Paraffins in Environmental Samples Using Comprehensive Two-Dimensional Gas Chromatography-Electron Capture Negative Ionization High-Resolution Time-of-Flight Mass Spectrometry.

PubMed

Xia, Dan; Gao, Lirong; Zheng, Minghui; Tian, Qichang; Huang, Huiting; Qiao, Lin

2016-07-19

Chlorinated paraffins (CPs) are complex technical mixtures containing thousands of isomers. Analyzing CPs in environmental matrices is extremely challenging. CPs have broad, unresolved profiles when analyzed by one-dimensional gas chromatography (GC). Comprehensive two-dimensional GC (GC×GC) can separate CPs with a high degree of orthogonality. A novel method for simultaneously profiling and quantifying short- and medium-chain CPs, using GC×GC coupled with electron capture negative ionization high-resolution time-of-flight mass spectrometry, was developed. The method allowed 48 CP formula congener groups to be analyzed highly selectively in one injection through accurate mass measurements of the [M - Cl](-) ions in full scan mode. The correlation coefficients (R(2)) for the linear calibration curves for different chlorine contents were 0.982 for short-chain CPs and 0.945 for medium-chain CPs. The method was successfully used to determine CPs in sediment and fish samples. By using this method, with enhanced chromatographic separation and high mass resolution, interferences between CP congeners and other organohalogen compounds, such as toxaphene, are minimized. New compounds, with the formulas C9H14Cl6 and C9H13Cl7, were found in sediment and biological samples for the first time. The method was shown to be a powerful tool for the analysis of CPs in environmental samples.

Nonequilibrium life-cycles in Ocean Heat Content

NASA Astrophysics Data System (ADS)

Weiss, Jeffrey B.; Fox-Kemper, Baylor; Mandal, Dibyendu; Zia, Royce K. P.

2014-03-01

Natural climate variability can be considered as fluctuations in a nonequilibrium steady state. A fundamental property of nonequilibrium steady states is the phase space current which provides a preferred direction for fluctuations, and is manifested as preferred life-cycles for climate fluctuations. We propose a new quantity, the phase space angular momentum, to quantify the phase space rotation. In analogy with traditional angular momentum, which quantifies the rotation of mass in physical space, the phase space angular momentum quantifies the rotation of probability in phase space. It has the additional advantage that it is straightforward to calculate from a time series. We investigate the phase space angular momentum for fluctuations in ocean heat content in both observations and ocean general circulation models. We gratefully acknowledge financial support from the National Science Foundation (USA) under grant OCE 1245944.

Determining the Pressure Shift of Helium I Lines Using White Dwarf Stars

NASA Astrophysics Data System (ADS)

Camarota, Lawrence

This dissertation explores the non-Doppler shifting of Helium lines in the high pressure conditions of a white dwarf photosphere. In particular, this dissertation seeks to mathematically quantify the shift in a way that is simple to reproduce and account for in future studies without requiring prior knowledge of the star's bulk properties (mass, radius, temperature, etc.). Two main methods will be used in this analysis. First, the spectral line will be quantified with a continuous wavelet transformation, and the components will be used in a chi2 minimizing linear regression to predict the shift. Second, the position of the lines will be calculated using a best-fit Levy-alpha line function. These techniques stand in contrast to traditional methods of quantifying the center of often broad spectral lines, which usually assume symmetry on the parts of the lines.

Gravitational lenses and dark matter - Theory

NASA Technical Reports Server (NTRS)

Gott, J. Richard, III

1987-01-01

Theoretical models are presented for guiding the application of gravitational lenses to probe the characteristics of dark matter in the universe. Analytical techniques are defined for quantifying the mass associated with lensing galaxies (in terms of the image separation), determining the quantity of dark mass of the lensing bodies, and estimating the mass density of the lenses. The possibility that heavy halos are made of low mass stars is considered, along with the swallowing of central images of black holes or cusps in galactic nuclei and the effects produced on a lensed quasar image by nonbaryonic halos. The observable effects of dense groups and clusters and the characteristics of dark matter strings are discussed, and various types of images which are possible due to lensing phenomena and position are described.

Quantitative and Qualitative Aspects of Gas-Metal-Oxide Mass Transfer in High-Temperature Confocal Scanning Laser Microscopy

NASA Astrophysics Data System (ADS)

Piva, Stephano P. T.; Pistorius, P. Chris; Webler, Bryan A.

2018-05-01

During high-temperature confocal scanning laser microscopy (HT-CSLM) of liquid steel samples, thermal Marangoni flow and rapid mass transfer between the sample and its surroundings occur due to the relatively small sample size (diameter around 5 mm) and large temperature gradients. The resulting evaporation and steel-slag reactions tend to change the chemical composition in the metal. Such mass transfer effects can change observed nonmetallic inclusions. This work quantifies oxide-metal-gas mass transfer of solutes during HT-CSLM experiments using computational simulations and experimental data for (1) dissolution of MgO inclusions in the presence and absence of slag and (2) Ca, Mg-silicate inclusion changes upon exposure of a Si-Mn-killed steel to an oxidizing gas atmosphere.

Mass Spectrometry in Clinical Laboratory: Applications in Therapeutic Drug Monitoring and Toxicology.

PubMed

Garg, Uttam; Zhang, Yan Victoria

2016-01-01

Mass spectrometry (MS) has been used in research and specialized clinical laboratories for decades as a very powerful technology to identify and quantify compounds. In recent years, application of MS in routine clinical laboratories has increased significantly. This is mainly due to the ability of MS to provide very specific identification, high sensitivity, and simultaneous analysis of multiple analytes (>100). The coupling of tandem mass spectrometry with gas chromatography (GC) or liquid chromatography (LC) has enabled the rapid expansion of this technology. While applications of MS are used in many clinical areas, therapeutic drug monitoring, drugs of abuse, and clinical toxicology are still the primary focuses of the field. It is not uncommon to see mass spectrometry being used in routine clinical practices for those applications.

Analysis of the Proteome of Hair-Cell Stereocilia by Mass Spectrometry

PubMed Central

Krey, Jocelyn F.; Wilmarth, Philip A.; David, Larry L.; Barr-Gillespie, Peter G.

2017-01-01

Characterization of proteins that mediate mechanotransduction by hair cells, the sensory cells of the inner ear, is hampered by the scarcity of these cells and their sensory organelle, the hair bundle. Mass spectrometry, with its high sensitivity and identification precision, is the ideal method for determining which proteins are present in bundles and what proteins they interact with. We describe here the isolation of mouse hair bundles, as well as preparation of bundle-protein samples for mass spectrometry. We also describe protocols for data-dependent (shotgun) and parallel-reaction-monitoring (targeted) mass spectrometry that allow us to identify and quantify proteins of the hair bundle. These sensitive methods are particularly useful for comparing proteomes of wild-type and mice with deafness mutations affecting hair-bundle proteins. (120 words; maximum 250) PMID:28109437

Focusing cosmic telescopes: systematics of strong lens modeling

NASA Astrophysics Data System (ADS)

Johnson, Traci Lin; Sharon, Keren q.

2018-01-01

The use of strong gravitational lensing by galaxy clusters has become a popular method for studying the high redshift universe. While diverse in computational methods, lens modeling techniques have grasped the means for determining statistical errors on cluster masses and magnifications. However, the systematic errors have yet to be quantified, arising from the number of constraints, availablity of spectroscopic redshifts, and various types of image configurations. I will be presenting my dissertation work on quantifying systematic errors in parametric strong lensing techniques. I have participated in the Hubble Frontier Fields lens model comparison project, using simulated clusters to compare the accuracy of various modeling techniques. I have extended this project to understanding how changing the quantity of constraints affects the mass and magnification. I will also present my recent work extending these studies to clusters in the Outer Rim Simulation. These clusters are typical of the clusters found in wide-field surveys, in mass and lensing cross-section. These clusters have fewer constraints than the HFF clusters and thus, are more susceptible to systematic errors. With the wealth of strong lensing clusters discovered in surveys such as SDSS, SPT, DES, and in the future, LSST, this work will be influential in guiding the lens modeling efforts and follow-up spectroscopic campaigns.

Quantifying energy and mass transfer in crop canopies: sensors for measurement of temperature and air velocity

NASA Technical Reports Server (NTRS)

Bugbee, B.; Monje, O.; Tanner, B.

1996-01-01

Here we report on the in situ performance of inexpensive, miniature sensors that have increased our ability to measure mass and energy fluxes from plant canopies in controlled environments: 1. Surface temperature. Canopy temperature measurements indicate changes in stomatal aperture and thus latent and sensible heat fluxes. Infrared transducers from two manufacturers (Exergen Corporation, Newton, MA; and Everest Interscience, Tucson, AZ, USA) have recently become available. Transducer accuracy matched that of a more expensive hand-held infrared thermometer. 2. Air velocity varies above and within plant canopies and is an important component in mass and energy transfer models. We tested commercially-available needle, heat-transfer anemometers (1 x 50 mm cylinder) that consist of a fine-wire thermocouple and a heater inside a hypodermic needle. The needle is heated and wind speed determined from the temperature rise above ambient. These sensors are particularly useful in measuring the low wind speeds found within plant canopies. 3. Accurate measurements of air temperature adjacent to plant leaves facilitates transport phenomena modeling. We quantified the effect of radiation and air velocity on temperature rise in thermocouples from 10 to 500 micrometers. At high radiation loads and low wind speeds, temperature errors were as large as 7 degrees C above air temperature.

Quantitative mass imaging of single biological macromolecules.

PubMed

Young, Gavin; Hundt, Nikolas; Cole, Daniel; Fineberg, Adam; Andrecka, Joanna; Tyler, Andrew; Olerinyova, Anna; Ansari, Ayla; Marklund, Erik G; Collier, Miranda P; Chandler, Shane A; Tkachenko, Olga; Allen, Joel; Crispin, Max; Billington, Neil; Takagi, Yasuharu; Sellers, James R; Eichmann, Cédric; Selenko, Philipp; Frey, Lukas; Riek, Roland; Galpin, Martin R; Struwe, Weston B; Benesch, Justin L P; Kukura, Philipp

2018-04-27

The cellular processes underpinning life are orchestrated by proteins and their interactions. The associated structural and dynamic heterogeneity, despite being key to function, poses a fundamental challenge to existing analytical and structural methodologies. We used interferometric scattering microscopy to quantify the mass of single biomolecules in solution with 2% sequence mass accuracy, up to 19-kilodalton resolution, and 1-kilodalton precision. We resolved oligomeric distributions at high dynamic range, detected small-molecule binding, and mass-imaged proteins with associated lipids and sugars. These capabilities enabled us to characterize the molecular dynamics of processes as diverse as glycoprotein cross-linking, amyloidogenic protein aggregation, and actin polymerization. Interferometric scattering mass spectrometry allows spatiotemporally resolved measurement of a broad range of biomolecular interactions, one molecule at a time. Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

Central Stellar Mass Deficits in the Bulges of Local Lenticular Galaxies

NASA Astrophysics Data System (ADS)

Dullo, B. T.

2014-03-01

The centers of giant galaxies display stellar mass deficits (Mdef) which are thought to be a signature left by inspiraling supermassive black hole (SMBH) binaries that are formed in post-merger galaxies. We quantify these deficits for a sample of five luminous lenticular galaxies with bulge magnitude MV ≲ -21 mag and find Mdef ≍ 0.5 - 2MBH (black hole mass). Contrary to the traditionally proposed lenticular galaxy formation mechanisms such as ram-pressure stripping and galaxy harassment, the mass deficits in these galaxies suggest a two stage inside-out process for their assembly. That is, their bulges may have formed through “dry” major-merger events involving SMBHs while their disk was subsequently built up via cold gas accretion scenarios. Interestingly, these bulges have sizes and mass densities comparable to the compact massive galaxies found at z ˜ 2.

Racial Differences in Attitudes toward Direct Reference Political Advertising.

ERIC Educational Resources Information Center

Gordon, Thomas F.; Surlin, Stuart H.

Random telephone surveys in a northern and a southern city were initiated to determine attitudes toward "informative" and "direct reference" mass media political advertisements. Responses were organized in regional, social, and racial categories. The results quantified reactions to the two types of political messages of blacks…

Environmental impact and human health risks of polychlorinated dibenzo-p-dioxins and dibenzofurans in the vicinity of a new hazardous waste incinerator: a case study.

PubMed

Ferré-Huguet, Núria; Nadal, Martí; Schuhmacher, Marta; Domingo, José L

2006-01-01

The purpose of this study was to assess the environmental impact of polychlorinated dibenzo-p-dioxins and dibenzofurans (PCDD/Fs) in the vicinity of a new hazardous waste incinerator (HWI) 4 years after regular operation of the facility. A double approach was carried out. The PCDD/F congener profiles corresponding to environmental samples, soil and herbage, collected before the HWI (baseline) and 4 years after starting regular operations, as well as PCDD/F profiles of air emission samples, were compared. The potential health risks (carcinogenic and noncarcinogenic) due to PCDD/F exposure were assessed for adults and children living in the neighborhood of the facility. Human exposure to PCDD/Fs was mainly due to dietary food intake. Comparisons between the PCDD/F congener profiles corresponding to the baseline and current surveys, as well as data concerning the human health risk assessment, indicate that the HWI in question does not cause additional risks to the environment orto the population living in the vicinity of the facility.

Effect of forage supplements on the incidence of bloat in dairy cows grazing high clover pastures.

PubMed

Phillips, C J; James, N L; Murray-Evans, J P

1996-08-17

The effect of offering forage supplements of different compositions was examined in two experiments with cows grazing high clover swards. In the first experiment strawmix supplements of high or low energy content (11 and 9 MJ metabolisable energy/kg dry matter [DM]) and high or low crude protein content (17 and 4 g/kg DM) were offered for periods of three weeks. The energy and protein contents were varied by the content of molasses and soyabean meal, respectively. The high energy, high protein supplement increased the incidence of bloat, and the low energy, high protein supplement reduced it, compared with grazing alone. Bloat was most evident in the first two weeks of each feeding period, suggesting that the cows partially adapted to the diets within three weeks. In the second experiment silage supplements reduced the incidence of bloat among cows grazing both tall and short swards. The most suitable forages to feed when there is a risk of bloat are those that are slowly fermented in the rumen but are eaten in sufficient quantity to reduce periods of rapid herbage intake.

Patterns in food intake correlate with body mass index.

PubMed

Periwal, Vipul; Chow, Carson C

2006-11-01

Quantifying eating behavior may give clues to both the physiological and behavioral mechanisms behind weight regulation. We analyzed year-long dietary records of 29 stable-weight subjects. The records showed wide daily variations of food intake. We computed the temporal autocorrelation and skewness of food intake mass, energy, carbohydrate, fat, and protein. We also computed the cross-correlation coefficient between intake mass and intake energy. The mass of the food intake exhibited long-term trends that were positively skewed, with wide variability among individuals. The average duration of the trends (P = 0.003) and the skewness (P = 0.006) of the food intake mass were significantly correlated with mean body mass index (BMI). We also found that the lower the correlation coefficient between the energy content and the mass of food intake, the higher the BMI. Our results imply that humans in neutral energy balance eating ad libitum exhibit a long-term positive bias in the food intake that operates partially through the mass of food eaten to defend against eating too little more vigorously than eating too much.

Fourier transform ion cyclotron resonance mass spectrometry

NASA Astrophysics Data System (ADS)

Marshall, Alan G.

1998-06-01

As for Fourier transform infrared (FT-IR) interferometry and nuclear magnetic resonance (NMR) spectroscopy, the introduction of pulsed Fourier transform techniques revolutionized ion cyclotron resonance mass spectrometry: increased speed (factor of 10,000), increased sensitivity (factor of 100), increased mass resolution (factor of 10,000-an improvement not shared by the introduction of FT techniques to IR or NMR spectroscopy), increased mass range (factor of 500), and automated operation. FT-ICR mass spectrometry is the most versatile technique for unscrambling and quantifying ion-molecule reaction kinetics and equilibria in the absence of solvent (i.e., the gas phase). In addition, FT-ICR MS has the following analytically important features: speed (~1 second per spectrum); ultrahigh mass resolution and ultrahigh mass accuracy for analysis of mixtures and polymers; attomole sensitivity; MSn with one spectrometer, including two-dimensional FT/FT-ICR/MS; positive and/or negative ions; multiple ion sources (especially MALDI and electrospray); biomolecular molecular weight and sequencing; LC/MS; and single-molecule detection up to 108 Dalton. Here, some basic features and recent developments of FT-ICR mass spectrometry are reviewed, with applications ranging from crude oil to molecular biology.

Prediction of Cell Wall Properties and Response to Deconstruction Using Alkaline Pretreatment in Diverse Maize Genotypes Using Py-MBMS and NIR

DOE PAGES

Li, Muyang; Williams, Daniel L.; Heckwolf, Marlies; ...

2016-10-04

In this paper, we explore the ability of several characterization approaches for phenotyping to extract information about plant cell wall properties in diverse maize genotypes with the goal of identifying approaches that could be used to predict the plant's response to deconstruction in a biomass-to-biofuel process. Specifically, a maize diversity panel was subjected to two high-throughput biomass characterization approaches, pyrolysis molecular beam mass spectrometry (py-MBMS) and near-infrared (NIR) spectroscopy, and chemometric models to predict a number of plant cell wall properties as well as enzymatic hydrolysis yields of glucose following either no pretreatment or with mild alkaline pretreatment. These weremore » compared to multiple linear regression (MLR) models developed from quantified properties. We were able to demonstrate that direct correlations to specific mass spectrometry ions from pyrolysis as well as characteristic regions of the second derivative of the NIR spectrum regions were comparable in their predictive capability to partial least squares (PLS) models for p-coumarate content, while the direct correlation to the spectral data was superior to the PLS for Klason lignin content and guaiacyl monomer release by thioacidolysis as assessed by cross-validation. The PLS models for prediction of hydrolysis yields using either py-MBMS or NIR spectra were superior to MLR models based on quantified properties for unpretreated biomass. However, the PLS models using the two high-throughput characterization approaches could not predict hydrolysis following alkaline pretreatment while MLR models based on quantified properties could. This is likely a consequence of quantified properties including some assessments of pretreated biomass, while the py-MBMS and NIR only utilized untreated biomass.« less

Detection and Quantification of Silver Nanoparticles at Environmentally Relevant Concentrations Using Asymmetric Flow Field??Flow Fractionation Online with Single Particle Inductively Coupled Plasma Mass Spectrometry

EPA Pesticide Factsheets

The presence of silver nanoparticles (AgNPs) in aquatic environments could potentially cause adverse impacts on ecosystems and human health. However, current understanding of the environmental fate and transport of AgNPs is still limited because their properties in complex environmental samples cannot be accurately determined. In this study, the feasibility of using asymmetric flow field-flow fractionation (AF4) connected online with single particle inductively coupled plasma mass spectrometry (spICPMS) to detect and quantify AgNPs at environmentally relevant concentrations was investigated. The AF4 channel had a thickness of 350 00b5m and its accumulation wall was a 10 kDa regenerated cellulose membrane. A 0.02 % FL-70 surfactant solution was used as an AF4 carrier. With 1.2 mL/min AF4 cross flow rate, 1.5 mL/min AF4 channel flow rate, and 5 ms spICPMS dwell time, the AF4??spICPMS can detect and quantify 40 ?? 80 nm AgNPs, as well as Ag-SiO2 nanoparticles (51.0 nm diameter Ag core and 21.6 nm SiO2 shell), with good recovery within 30 min. This system was not only effective in differentiating and quantifying different types of AgNPs with similar hydrodynamic diameters, such as in mixtures containing Ag-SiO2 core-shell nanoparticles and 40 ?? 80 nm AgNPs, but also suitable for differentiating between 40 nm AgNPs and elevated dissolved Ag content. The study results indicate that AF4??spICPMS is capable of detecting and quantifying AgNPs and other engineered

Prediction of Cell Wall Properties and Response to Deconstruction Using Alkaline Pretreatment in Diverse Maize Genotypes Using Py-MBMS and NIR

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Muyang; Williams, Daniel L.; Heckwolf, Marlies

In this paper, we explore the ability of several characterization approaches for phenotyping to extract information about plant cell wall properties in diverse maize genotypes with the goal of identifying approaches that could be used to predict the plant's response to deconstruction in a biomass-to-biofuel process. Specifically, a maize diversity panel was subjected to two high-throughput biomass characterization approaches, pyrolysis molecular beam mass spectrometry (py-MBMS) and near-infrared (NIR) spectroscopy, and chemometric models to predict a number of plant cell wall properties as well as enzymatic hydrolysis yields of glucose following either no pretreatment or with mild alkaline pretreatment. These weremore » compared to multiple linear regression (MLR) models developed from quantified properties. We were able to demonstrate that direct correlations to specific mass spectrometry ions from pyrolysis as well as characteristic regions of the second derivative of the NIR spectrum regions were comparable in their predictive capability to partial least squares (PLS) models for p-coumarate content, while the direct correlation to the spectral data was superior to the PLS for Klason lignin content and guaiacyl monomer release by thioacidolysis as assessed by cross-validation. The PLS models for prediction of hydrolysis yields using either py-MBMS or NIR spectra were superior to MLR models based on quantified properties for unpretreated biomass. However, the PLS models using the two high-throughput characterization approaches could not predict hydrolysis following alkaline pretreatment while MLR models based on quantified properties could. This is likely a consequence of quantified properties including some assessments of pretreated biomass, while the py-MBMS and NIR only utilized untreated biomass.« less

Comprehensive proteome analysis of human skeletal muscle in cachexia and sarcopenia: a pilot study

PubMed Central

Ebhardt, H. Alexander; Degen, Simone; Tadini, Valentina; Schilb, Alain; Johns, Neil; Greig, Carolyn A.; Fearon, Kenneth C.H.; Aebersold, Ruedi

2017-01-01

Abstract Background Cancer cachexia (cancer‐induced muscle wasting) is found in a subgroup of cancer patients leaving the patients with a poor prognosis for survival due to a lower tolerance of the chemotherapeutic drug. The cause of the muscle wasting in these patients is not fully understood, and no predictive biomarker exists to identify these patients early on. Skeletal muscle loss is an inevitable consequence of advancing age. As cancer frequently occurs in old age, identifying and differentiating the molecular mechanisms mediating muscle wasting in cancer cachexia vs. age‐related sarcopenia are a challenge. However, the ability to distinguish between them is critical for early intervention, and simple measures of body weight may not be sufficiently sensitive to detect cachexia early. Methods We used a range of omics approaches: (i) undepleted proteome was quantified using advanced high mass accuracy mass spectrometers in SWATH‐MS acquisition mode; (ii) phospho epitopes were quantified using protein arrays; and (iii) morphology was assessed using fluorescent microscopy. Results We quantified the soluble proteome of muscle biopsies from cancer cachexia patients and compared them with cohorts of cancer patients and healthy individuals with and without age‐related muscle loss (aka age‐related sarcopenia). Comparing the proteomes of these cohorts, we quantified changes in muscle contractile myosins and energy metabolism allowing for a clear identification of cachexia patients. In an in vitro time lapse experiment, we mimicked cancer cachexia and identified signal transduction pathways governing cell fusion to play a pivotal role in preventing muscle regeneration. Conclusions The work presented here lays the foundation for further understanding of muscle wasting diseases and holds the promise of overcoming ambiguous weight loss as a measure for defining cachexia to be replaced by a precise protein signature. PMID:28296247

Nondestructive microimaging during preclinical pin-on-plate testing of novel materials for arthroplasty.

PubMed

Teeter, Matthew G; Langohr, G Daniel G; Medley, John B; Holdsworth, David W

2014-02-01

The purpose of this study was to determine the ability of micro-computed tomography to quantify wear in preclinical pin-on-plate testing of materials for use in joint arthroplasty. Wear testing of CoCr pins articulating against six polyetheretherketone plates was performed using a pin-on-plate apparatus over 2 million cycles. Change in volume due to wear was quantified with gravimetric analysis and with micro-computed tomography, and the volumes were compared. Separately, the volume of polyetheretherketone pin-on-plate specimens that had been soaking in fluid for 52 weeks was quantified with both gravimetric analysis and micro-computed tomography, and repeated after drying. The volume change with micro-computed tomography was compared to the mass change with gravimetric analysis. The mean wear volume measured was 8.02 ± 6.38 mm(3) with gravimetric analysis and 6.76 ± 5.38 mm(3) with micro-computed tomography (p = 0.06). Micro-computed tomography volume measurements did not show a statistically significant change with drying for either the plates (p = 0.60) or the pins (p = 0.09), yet drying had a significant effect on the gravimetric mass measurements for both the plates (p = 0.03) and the pins (p = 0.04). Micro-computed tomography provided accurate measurements of wear in polyetheretherketone pin-on-plate test specimens, and no statistically significant change was caused by fluid uptake. Micro-computed tomography quantifies wear depth and wear volume, mapped to the specific location of damage on the specimen, and is also capable of examining subsurface density as well as cracking. Its noncontact, nondestructive nature makes it ideal for preclinical testing of materials, in which further additional analysis techniques may be utilized.

Non-invasive measurement of instantaneous forces during aquatic locomotion: a case study of the bluegill sunfish pectoral fin.

PubMed

Peng, Jifeng; Dabiri, John O; Madden, Peter G; Lauder, George V

2007-02-01

Swimming and flying animals generate unsteady locomotive forces by delivering net momentum into the fluid wake. Hence, swimming and flying forces can be quantified by measuring the momentum of animal wakes. A recently developed model provides an approach to empirically deduce swimming and flying forces based on the measurement of velocity and vortex added-mass in the animal wake. The model is contingent on the identification of the vortex boundary in the wake. This paper demonstrates the application of that method to a case study quantifying the instantaneous locomotive forces generated by the pectoral fins of the bluegill sunfish (Lepomis macrochirus Rafinesque), measured using digital particle image velocimetry (DPIV). The finite-time Lyapunov exponent (FTLE) field calculated from the DPIV data was used to determine the wake vortex boundary, according to recently developed fluid dynamics theory. Momentum of the vortex wake and its added-mass were determined and the corresponding instantaneous locomotive forces were quantified at discrete time points during the fin stroke. The instantaneous forces estimated in this study agree in magnitude with the time-averaged forces quantified for the pectoral fin of the same species swimming in similar conditions and are consistent with the observed global motion of the animals. A key result of this study is its suggestion that the dynamical effect of the vortex wake on locomotion is to replace the real animal fin with an ;effective appendage', whose geometry is dictated by the FTLE field and whose interaction with the surrounding fluid is wholly dictated by inviscid concepts from potential flow theory. Benefits and limitations of this new framework for non-invasive instantaneous force measurement are discussed, and its application to comparative biomechanics and engineering studies is suggested.

Life cycle assessment of hemp cultivation and use of hemp-based thermal insulator materials in buildings.

PubMed

Zampori, Luca; Dotelli, Giovanni; Vernelli, Valeria

2013-07-02

The aim of this research is to assess the sustainability of a natural fiber, such as hemp (Cannabis sativa), and its use as thermal insulator for building applications. The sustainability of hemp was quantified by life cycle assessment (LCA) and particular attention was given to the amount of CO2eq of the whole process, and the indicator greenhouse gas protocol (GGP) was selected to quantify CO2eq emissions. In this study also CO2 uptake of hemp was considered. Two different allocation procedures (i.e., mass and economic) were adopted. Other indicators, such as Cumulative Energy Demand (CED) and EcoIndicator99 H were calculated. The production of 1 ha yielded 15 ton of hemp, whose global warming potential (GWP100) was equal to about -26.01 ton CO2eq: the amount allocated to the technical fiber (20% of the total amount of hemp biomass) was -5.52 ton CO2eq when mass allocation was used, and -5.54 ton CO2eq when economic allocation was applied. The sustainability for building applications was quantified by considering an insulation panel made by hemp fiber (85%) and polyester fiber (15%) in 1 m(2) of wall having a thermal transmittance (U) equal to 0.2 W/m(2)_K. The environmental performances of the hemp-based panel were compared to those of a rockwool-based one.

Detection of ingested nitromethane and reliable creatinine assessment using multiple common analytical methods.

PubMed

Murphy, Christine M; Devlin, John J; Beuhler, Michael C; Cheifetz, Paul; Maynard, Susan; Schwartz, Michael D; Kacinko, Sherri

2018-04-01

Nitromethane, found in fuels used for short distance racing, model cars, and model airplanes, produces a falsely elevated serum creatinine with standard creatinine analysis via the Jaffé method. Erroneous creatinine elevation often triggers extensive testing, leads to inaccurate diagnoses, and delayed or inappropriate medical interventions. Multiple reports in the literature identify "enzymatic assays" as an alternative method to detect the true value of creatinine, but this ambiguity does not help providers translate what type of enzymatic assay testing can be done in real time to determine if there is indeed false elevation. We report seven cases of ingested nitromethane where creatinine was determined via Beckman Coulter ® analyser using the Jaffé method, Vitros ® analyser, or i-Stat ® point-of-care testing. Nitromethane was detected and semi-quantified using a common clinical toxic alcohol analysis method, and quantified by headspace-gas chromatography-mass spectrometry. When creatinine was determined using i-Stat ® point-of-care testing or a Vitros ® analyser, levels were within the normal range. Comparatively, all initial creatinine levels obtained via the Jaffé method were elevated. Nitromethane concentrations ranged from 42 to 310 μg/mL. These cases demonstrate reliable assessment of creatinine through other enzymatic methods using a Vitros ® analyser or i-STAT ® . Additionally, nitromethane is detectable and quantifiable using routine alcohols gas chromatography analysis and by headspace-gas chromatography-mass spectrometry.

Characterisation of Black Carbon (BC) mixing state and flux in Beijing using single particle measurements.

NASA Astrophysics Data System (ADS)

Joshi, Rutambhara; Liu, Dantong; Allan, James; Coe, Hugh; Flynn, Michael; Broda, Kurtis; Olfert, Jason; Irwin, Martin; Sun, Yele; Fu, Pingqing; Wang, Junfeng; Ge, Xinlei; Langford, Ben; Nemitz, Eiko; Mullinger, Neil

2017-04-01

BC is generated by the incomplete combustion of carbonaceous fuels and it is an important component of fine PM2.5. In the atmosphere BC particles have a complex structure and its mixing state has crucial impact on optical properties. Quantifying the sources and emissions of black carbon in urban environments is important and presently uncertain, particularly in megacities undergoing rapid growth and change in emissions. During the winter of 2016 (10th Nov-10th Dec) the BC was characterised as part of a large joint UK-China field experiment in Beijing. This paper focuses on understanding the mixing state of BC as well as identification and quantification of BC sources. We used a combination of a Centrifugal Particle Mass Analyser (CPMA) and a Single Particle Soot Photometer (SP2) to uniquely quantify the morphology independent mass of single refractory BC particles and their coating content. The CPMA allows us to select pre-charged aerosol particles according to their mass to charge ratio and the SP2 provides information on the mass of refractory BC through a laser-induced incandescence method. Furthermore, another SP2 was used to measure the BC flux at 100m height using the Eddy Covariance method. We have successfully gathered 4 weeks of continuous measurements which include several severe pollution events in Beijing. Here we present preliminary results, characterising the distribution of coating mass on BC particles in Beijing and linking this to the main sources of BC in the city. We will provide initial estimates of the BC flux over a several kilometre footprint. Such analysis will provide important information for the further investigation of source distribution, emission, lifetime and optical properties of BC under complex environments in Beijing.

Measurement of tamsulosin in human serum by liquid chromatography–tandem mass spectrometry☆

PubMed Central

Upreti, Rita; Homer, Natalie Z.M.; Naredo, Gregorio; Cobice, Diego F.; Hughes, Katherine A.; Stewart, Laurence H.; Walker, Brian R.; Andrew, Ruth

2013-01-01

A simple, sensitive and robust method to extract tamsulosin from human serum, and quantify by liquid chromatography–tandem mass spectrometry (LC–MS/MS) was developed and validated and is applicable as a measure of compliance in clinical research. Tamsulosin was extracted from human serum (100 μL) via liquid–liquid extraction with methyl tert-butyl ether (2 mL) following dilution with 0.1 M ammonium hydroxide (100 μL), achieving 99.9% analyte recovery. Internal standard, d9-finasteride, was synthesised in-house. Analyte and internal standard were separated on an Ascentis® Express C18 (100 mm × 3 mm, 2.7 μm) column using a gradient elution with mobile phases methanol and 2 mM aqueous ammonium acetate (5:95, v/v). Total run-time was 6 min. Tamsulosin was quantified using a triple quadrupole mass spectrometer operated in multi-reaction-monitoring (MRM) mode using positive electrospray ionisation. Mass transitions monitored for quantitation were: tamsulosin m/z 409 → 228 and d9-finasteride m/z 382 → 318, with the structural formulae of ions confirmed by Fourier transform ion cyclotron resonance mass spectrometry (within 10 ppm). The limit of quantitation was 0.2 ng/mL, and the method was validated in the linear range 0.2–50 ng/mL with acceptable inter- and intra-assay precision and accuracy and stability suitable for routine laboratory practice. The method was successfully applied to samples taken from research volunteers in a clinical study of benign prostatic hyperplasia. PMID:23743242

Relationships Between Propulsion and Anthropometry in Paralympic Swimmers.

PubMed

Dingley, Andrew A; Pyne, David B; Burkett, Brendan

2015-11-01

To characterize relationships between propulsion, anthropometry, and performance in Paralympic swimming. A cross-sectional study of swimmers (13 male, 15 female) age 20.5 ± 4.4 y was conducted. Subject locomotor categorizations were no physical disability (n = 8, classes S13-S14) and low-severity (n = 11, classes S9-S10) or midseverity disability (n = 9, classes S6-S8). Full anthropometric profiles estimated muscle mass and body fat, a bilateral swim-bench ergometer quantified upper-body power production, and 100-m time trials quantified swimming performance. Correlations between ergometer mean power and swimming performance increased with degree of physical disability (low-severity male r = .65, ± 0.56, and female r = .68, ± 0.64; midseverity, r = .87, ± 0.41, and r = .79, ± 0.75). The female midseverity group showed nearperfect (positive) relationships for taller swimmers' (with a greater muscle mass and longer arm span) swimming faster, while for female no- and low-severity-disability groups, greater muscle mass was associated with slower velocity (r = .78, ± 0.43, and r = .65, ± 0.66). This was supported with lighter females (with less frontal surface area) in the low-severity group being faster (r = .94, ± 0.24). In a gender contrast, low-severity males with less muscle mass (r = -.64, ± 0.56), high skinfolds (r = .78, ± 0.43), a longer arm span (r = .58, ± 0.60) or smaller frontal surface area (r = -.93, ± 0.19) were detrimental to swimming-velocity production. Low-severity male and midseverity female Paralympic swimmers should be encouraged to develop muscle mass and upper-body power to enhance swimming performance. The generalized anthropometric measures appear to be a secondary consideration for coaches.

Quantification of colloidal and aqueous element transfer in soils: The dual-phase mass balance model

USGS Publications Warehouse

Bern, Carleton R.; Thompson, Aaron; Chadwick, Oliver A.

2015-01-01

Mass balance models have become standard tools for characterizing element gains and losses and volumetric change during weathering and soil development. However, they rely on the assumption of complete immobility for an index element such as Ti or Zr. Here we describe a dual-phase mass balance model that eliminates the need for an assumption of immobility and in the process quantifies the contribution of aqueous versus colloidal element transfer. In the model, the high field strength elements Ti and Zr are assumed to be mobile only as suspended solids (colloids) and can therefore be used to distinguish elemental redistribution via colloids from redistribution via dissolved aqueous solutes. Calculations are based upon element concentrations in soil, parent material, and colloids dispersed from soil in the laboratory. We illustrate the utility of this model using a catena in South Africa. Traditional mass balance models systematically distort elemental gains and losses and changes in soil volume in this catena due to significant redistribution of Zr-bearing colloids. Applying the dual-phase model accounts for this colloidal redistribution and we find that the process accounts for a substantial portion of the major element (e.g., Al, Fe and Si) loss from eluvial soil. In addition, we find that in illuvial soils along this catena, gains of colloidal material significantly offset aqueous elemental loss. In other settings, processes such as accumulation of exogenous dust can mimic the geochemical effects of colloid redistribution and we suggest strategies for distinguishing between the two. The movement of clays and colloidal material is a major process in weathering and pedogenesis; the mass balance model presented here is a tool for quantifying effects of that process over time scales of soil development.

Capillary electrophoresis with electrospray ionisation-mass spectrometry for the characterisation of degradation products in aged papers.

PubMed

Dupont, Anne-Laurence; Seemann, Agathe; Lavédrine, Bertrand

2012-01-30

A methodology for capillary electrophoresis/electrospray ionisation mass spectrometry (CE/ESI-MS) was developed for the simultaneous analysis of degradation products from paper among two families of compounds: low molar mass aliphatic organic acids, and aromatic (phenolic and furanic) compounds. The work comprises the optimisation of the CE separation and the ESI-MS parameters for improved sensitivity with model compounds using two successive designs of experiments. The method was applied to the analysis of lignocellulosic paper at different stages of accelerated hygrothermal ageing. The compounds of interest were identified. Most of them could be quantified and several additional analytes were separated. Copyright © 2011 Elsevier B.V. All rights reserved.

An insight into the adsorption and electrochemical processes occurring during the analysis of copper and lead in wines, using an electrochemical quartz crystal nanobalance.

PubMed

Yamasaki, Alzira; Oliveira, João A B P; Duarte, Armando C; Gomes, M Teresa S R

2012-08-30

Copper and lead in wine were quantified by anodic stripping voltammetry (ASV), performed onto the gold electrode of a piezoelectric quartz crystal. Both current or mass changes could be used as analytical signals, without a statistical difference in the results (α=0.05). However, the plot of mass vs. potential provided an in depth understanding of the electrochemical processes and allowed studying adsorption phenomena. Copper interaction with fructose is an example of a process which was not possible to ignore by observing the mass change on the gold electrode of the piezoelectric quartz crystal. Copyright © 2012 Elsevier B.V. All rights reserved.

Contributions of natural and anthropogenic radiative forcing to mass loss of Northern Hemisphere mountain glaciers and quantifying their uncertainties.

PubMed

Hirabayashi, Yukiko; Nakano, Kazunari; Zhang, Yong; Watanabe, Satoshi; Tanoue, Masahiro; Kanae, Shinjiro

2016-07-20

Observational evidence indicates that a number of glaciers have lost mass in the past. Given that glaciers are highly impacted by the surrounding climate, human-influenced global warming may be partly responsible for mass loss. However, previous research studies have been limited to analyzing the past several decades, and it remains unclear whether past glacier mass losses are within the range of natural internal climate variability. Here, we apply an optimal fingerprinting technique to observed and reconstructed mass losses as well as multi-model general circulation model (GCM) simulations of mountain glacier mass to detect and attribute past glacier mass changes. An 8,800-year control simulation of glaciers enabled us to evaluate detectability. The results indicate that human-induced increases in greenhouse gases have contributed to the decreased area-weighted average masses of 85 analyzed glaciers. The effect was larger than the mass increase caused by natural forcing, although the contributions of natural and anthropogenic forcing to decreases in mass varied at the local scale. We also showed that the detection of anthropogenic or natural influences could not be fully attributed when natural internal climate variability was taken into account.

Contributions of natural and anthropogenic radiative forcing to mass loss of Northern Hemisphere mountain glaciers and quantifying their uncertainties

NASA Astrophysics Data System (ADS)

Hirabayashi, Yukiko; Nakano, Kazunari; Zhang, Yong; Watanabe, Satoshi; Tanoue, Masahiro; Kanae, Shinjiro

2016-07-01

Observational evidence indicates that a number of glaciers have lost mass in the past. Given that glaciers are highly impacted by the surrounding climate, human-influenced global warming may be partly responsible for mass loss. However, previous research studies have been limited to analyzing the past several decades, and it remains unclear whether past glacier mass losses are within the range of natural internal climate variability. Here, we apply an optimal fingerprinting technique to observed and reconstructed mass losses as well as multi-model general circulation model (GCM) simulations of mountain glacier mass to detect and attribute past glacier mass changes. An 8,800-year control simulation of glaciers enabled us to evaluate detectability. The results indicate that human-induced increases in greenhouse gases have contributed to the decreased area-weighted average masses of 85 analyzed glaciers. The effect was larger than the mass increase caused by natural forcing, although the contributions of natural and anthropogenic forcing to decreases in mass varied at the local scale. We also showed that the detection of anthropogenic or natural influences could not be fully attributed when natural internal climate variability was taken into account.

Thin-Layer Chromatography/Desorption Electrospray Ionization Mass Spectrometry: Investigation of Goldenseal Alkaloids

DOE Office of Scientific and Technical Information (OSTI.GOV)

Van Berkel, Gary J; Tomkins, Bruce A; Kertesz, Vilmos

2007-01-01

Desorption electrospray ionization mass spectrometry was investigated as a means to qualitatively identify and to quantify analytes directly from developed normal-phase thin layer chromatography plates. The atmospheric sampling capillary of a commercial ion trap mass spectrometer was extended to permit sampling and ionization of analytes in bands separated on intact TLC plates (up to 10 cm x 10 cm). A surface positioning software package and the appropriate hardware enabled computer-controlled surface scanning along the length of development lanes or at fixed RF value across the plates versus the stationary desorption electrospray emitter. Goldenseal (Hydrastis canadensis) and related alkaloids and commercialmore » dietary supplements were used as standards and samples. Alkaloid standards and samples were spotted and separated on aluminum- or glass-backed plates using established literature methods. The mass spectral signal levels as a function of desorption spray solvent were investigated with acetonitrile proving superior to methanol. The detection levels (ca. 5 ng each or 14 -28 pmol) in mass spectral full scan mode were determined statistically from the calibration curves (2.5 - 100 pmol) for the standards berberine, palmatine and hydrastinine spotted as a mixture and separated on the plates. Qualitative screening of the major alkaloids present in six different over-the-counter "goldenseal" dietary supplements was accomplished by obtaining full scan mass spectra during surface scans along the development lane in the direction of increasing RF value. In one sample, alkaloids were detected that strongly suggested the presence of at least one additional herb undeclared on the product label. These same data indicated the misidentification of one of the alkaloids in the TLC literature. Quantities of the alkaloids present in two of the samples determined using the mass spectral data were in reasonable agreement with the label values indicating the quantitative ability of the method. The advantage of mass spectral measurements in identifying and quantifying materials within overlapping bands and in providing positive identification for even minor species in a mixture was also demonstrated.« less

Quantitation of protein S-glutathionylation by liquid chromatograph-tandem mass spectrometry: Correction for contaminating glutathione and glutathione disulfide

USDA-ARS?s Scientific Manuscript database

Protein S-glutathionylation is a posttranslational modification that links oxidative stimuli to reversible changes in cellular function. Protein-glutathione mixed disulfides (PSSG) are commonly quantified by the reduction of the disulfide and detection of the resultant glutathione species. This met...

Determining the relative susceptibility of four prion protein genotypes to atypical scrapie

USDA-ARS?s Scientific Manuscript database

Atypical scrapie is a sheep prion (PrPSc) disease whose epidemiology is consistent with a sporadic origin and is associated with specific polymorphisms of the normal cellular prion protein (PrPC). We describe a mass spectrometry-based method of detecting and quantifying the polymorphisms of sheep P...

Biomass and nutrient mass of Acacia dealbata and Eucalyptus globulus bioenergy plantations

Treesearch

Timothy J. Albaugh; Rafael A. Rubilar; Chris A. Maier; Eduardo A. Acuña; Rachel L. Cook

2017-01-01

We quantified biomass and nutrient accumulation of Acacia dealbata Link and Eucalyptus globulus Labill. planted at stem densities of 5000 and 15000 ha-1 in a bioenergy plantation in Chile. We tested the hypotheses that species and stocking will not affect biomass or nutrient accumulation. Species and...

Growth dynamics of specific spoilage organisms and associated spoilage biomarkers in chicken breast stored aerobically

USDA-ARS?s Scientific Manuscript database

This study was performed to identify and quantify selected volatile spoilage biomarkers in a headspace over chicken breast using solid phase microextraction (SPME) combined with gas chromatography-mass spectrometry-flame ionization detectors (GC-MS/FID). The chicken breast samples were aerobically s...

Synthesizing Scientific Progress: Outcomes from US EPA’s Carbonaceous Aerosols and Source Apportionment STAR Grants

EPA Science Inventory

ABSTRACTA number of studies in the past decade have transformed the way we think about atmospheric aerosols. The advances include, but are not limited to, source apportionment of organics using aerosol mass spectrometer data, the volatility basis set approach, quantifying isopre...

Quantification of tylosin and tylosin antibiotic resistance genes in cattle waste

USDA-ARS?s Scientific Manuscript database

Presented is the development of a solid phase extraction (SPE) procedure and a liquid chromatography-mass spectrometry (LC-MS/MS) method for quantifying tylosin in cattle waste samples. Tylosin is a macrolide antibiotic found naturally as a fermentation product of Streptomyces fradiae and is mainly ...

Air Emissions from Organic Soil Burning on the Coastal Plain of North Carolina

EPA Science Inventory

Emissions of trace gases and particles <10 and 2.5 microns aerodynamic diameter (PM10 and PM2.5, respectively) from fires during 2009-2011 on the North Carolina coastal plain were collected and analyzed. Carbon mass balance techniques were used to quantify emission factors (EFs)....

EXPERIMENTAL METHODOLOGIES AND PRELIMINARY TRANSFER FACTOR DATA FOR ESTIMATION OF DERMAL EXPOSURES TO PARTICLES

EPA Science Inventory

Developmental efforts and experimental data are described that focused on quantifying the transfer of particles on a mass basis from indoor surfaces to human skin. Methods were developed that utilized a common fluorescein-tagged Arizona Test Dust (ATD) as a possible surrogate ...

Effects of herbage allowance of native grasslands in purebred and crossbred beef cows: metabolic, endocrine and hepatic gene expression profiles through the gestation-lactation cycle.

PubMed

Laporta, J; Astessiano, A L; López-Mazz, C; Soca, P; Espasandin, A C; Carriquiry, M

2014-07-01

Our objective was to evaluate the metabolic, endocrine and hepatic mRNA profiles through the gestation-lactation cycle in purebred (PU: Angus and Hereford) and crossbred (CR: reciprocal F1 crosses) mutliparous beef cows (n=32), grazing on two herbage allowances of native pastures (2.5 v. 4 kg dry matter/kg BW; LO v. HI) and their associations with cow's productive performance (calf birth weight, milk production and commencement of luteal activity). Cow BW, body condition score (BCS) and blood samples were collected monthly, starting at -165 days relative to calving (days), and every 2 weeks after calving until +60 days of lactation. Liver biopsies were collected at -165, -75, -45, -15±10, and +15 and +60±3 days. Metabolic, endocrine and hepatic gene expression profiles, and calf birth weight, milk yield and postpartum commencement of luteal activity were evaluated. Overall, the most pronounced changes in metabolic, endocrine and hepatic gene expression occurred during winter gestation (-165 to -45 days), when all cows experienced the onset of a negative energy balance (decreased BCS, glucose and insulin, and increased non-esterified fatty acid concentrations, P<0.008). Concentrations of insulin and IGF-I were greater (P<0.037) in HI than in LO cows. However, serum IGF-I concentrations and hepatic growth hormone receptor (GHR) and IGF1 mRNA decreased (P<0.05) during the winter gestation period only in HI cows. Although IGF-I concentrations decreased (P<0.05) during the early postpartum (-15 v.+15 days) for all cows, the typical molecular mechanism that control the uncoupling of the growth hormone-IGF1 axis during the transition period of the dairy cattle (reduced hepatic GHR1A and IGF-I mRNA) was not observed in this study. The hepatic mRNA expression of key transcripts involved in gluconeogenesis and fatty-acid oxidation were upregulated (P<0.05) during winter gestation (from -165 to -45, -15 or +15 days, depending on the cow groups). Particularly, acyl-CoA oxidase-1 mRNA was greater for CR than for PU cows during winter gestation (-75 and -45 days), and fibroblast growth factor-21 mRNA was downregulated (P<0.01) only for HI cows during the transition (-15 v. 15 days) and lactation period (+15 to +60 days, P<0.01). These results, together with the greater BCS, estimated energy intake, increased milk yield and shorter commencement of luteal activity in HI than in LO, and in CR than in PU cows (P<0.018), would indicate that HI and CR cows were able to adapt more efficiently to changes in nutrient and energy supply through the gestation-lactation cycle.

Quantitative evaluation of intensive remedial action using long-term monitoring and tracer data at a DNAPL contaminated site, Wonju, Korea

NASA Astrophysics Data System (ADS)

Lee, S. S.; Kim, H. J.; Kim, M. O.; Lee, K.; Lee, K. K.

2016-12-01

A study finding evidence of remediation represented on monitoring data before and after in site intensive remedial action was performed with various quantitative evaluation methods such as mass discharge analysis, tracer data, statistical trend analysis, and analytical solutions at DNAPL contaminated site, Wonju, Korea. Remediation technologies such as soil vapor extraction, soil flushing, biostimulation, and pump-and-treat have been applied to eliminate the contaminant sources of trichloroethylene (TCE) and to prevent the migration of TCE plume from remediation target zones. Prior to the remediation action, the concentration and mass discharges of TCE at all transects were affected by seasonal recharge variation and residual DNAPLs sources. After the remediation, the effect of remediation took place clearly at the main source zone and industrial complex. By tracing a time-series of plume evolution, a greater variation in the TCE concentrations was detected at the plumes near the source zones compared to the relatively stable plumes in the downstream. The removal amount of the residual source mass during the intensive remedial action was estimated to evaluate the efficiency of the intensive remedial action using analytical solution. From results of quantitative evaluation using analytical solution, it is assessed that the intensive remedial action had effectively performed with removal efficiency of 70% for the residual source mass during the remediation period. Analytical solution which can consider and quantify the impacts of partial mass reduction have been proven to be useful tools for quantifying unknown contaminant source mass and verifying dissolved concentration at the DNAPL contaminated site and evaluating the efficiency of remediation using long-term monitoring data. Acknowledgement : This subject was supported by the Korea Ministry of Environment under "GAIA project (173-092-009) and (201400540010)", R&D Project on Enviornmental Management of Geologic CO2 storage" from the KEITI (Project number:2014001810003).

Changes in arm tissue composition with slowly progressive weight-lifting among women with breast cancer-related lymphedema.

PubMed

Zhang, Xiaochen; Brown, Justin C; Paskett, Electra D; Zemel, Babette S; Cheville, Andrea L; Schmitz, Kathryn H

2017-07-01

Studies in breast cancer-related lymphedema (BRCL) have exclusively examined total arm volume, but not the specific tissue composition that contributes to total volume. We evaluated baseline differences in arm tissue composition [fat mass, lean mass, bone mineral content (BMC), and bone mineral density (BMD)] between the affected and unaffected arms in women with BRCL. We compared changes in arm tissue composition and self-reported lymphedema symptoms after 1 year of weight-lifting versus control. We utilized data from physical activity and lymphedema trial that included 141 women with BRCL. Arm tissue composition was quantified using dual-energy X-ray absorptiometry. The severity of lymphedema was quantified using self-report survey. Weight-lifting was performed at community fitness facilities. At baseline, the affected arm had more fat (∆ = 89.7 g; P < 0.001) and lean mass (∆ = 149.1 g; P < 0.001), but less BMC (∆ = -3.2 g; P < 0.001) and less BMD (∆ = -5.5 mg/cm 2 ; P = 0.04) than the unaffected arm. After 12 months of weight-lifting, composition of the affected arm was improved: lean mass (71.2 g; P = 0.01) and BMD (14.0 mg/cm 2 ; P = 0.02) increased, arm fat percentage decreased (-1.5%; P = 0.003). Composition of the unaffected arm was only improved in lean mass (65.2 g; P = 0·04). Increases in lean mass were associated with less severe BCRL symptoms. Among women with BRCL, slowly progressive weight-lifting could improve arm tissue composition. Changes in arm tissue composition predict changes in symptom burden. Investigating the combined effects of exercise and weight loss on arm tissue composition and BCRL symptoms may provide additional insight into the benefits of lifestyle modification on lymphedema biology.

Raspberry Pi-powered imaging for plant phenotyping.

PubMed

Tovar, Jose C; Hoyer, J Steen; Lin, Andy; Tielking, Allison; Callen, Steven T; Elizabeth Castillo, S; Miller, Michael; Tessman, Monica; Fahlgren, Noah; Carrington, James C; Nusinow, Dmitri A; Gehan, Malia A

2018-03-01

Image-based phenomics is a powerful approach to capture and quantify plant diversity. However, commercial platforms that make consistent image acquisition easy are often cost-prohibitive. To make high-throughput phenotyping methods more accessible, low-cost microcomputers and cameras can be used to acquire plant image data. We used low-cost Raspberry Pi computers and cameras to manage and capture plant image data. Detailed here are three different applications of Raspberry Pi-controlled imaging platforms for seed and shoot imaging. Images obtained from each platform were suitable for extracting quantifiable plant traits (e.g., shape, area, height, color) en masse using open-source image processing software such as PlantCV. This protocol describes three low-cost platforms for image acquisition that are useful for quantifying plant diversity. When coupled with open-source image processing tools, these imaging platforms provide viable low-cost solutions for incorporating high-throughput phenomics into a wide range of research programs.

Transit Time and Normal Orientation of ICME-driven Shocks

NASA Astrophysics Data System (ADS)

Case, A. W.; Spence, H.; Owens, M.; Riley, P.; Linker, J.; Odstrcil, D.

2006-12-01

Interplanetary Coronal Mass Ejections (ICMEs) can drive shocks that accelerate particles to great energies. It is important to understand the acceleration, transport, and spectra of these particles in order to quantify this fundamental physical process operating throughout the cosmos. This understanding also helps to better protect astronauts and spacecraft in upcoming missions. We show that the ambient solar wind is crucial in determining characteristics of ICME-driven shocks, which in turn affect energetic particle production. We use a coupled 3-D MHD code of the corona and heliosphere to simulate ICME propagation from 30 solar radii to 1AU. ICMEs of different velocities are injected into a realistic solar wind to determine how the initial speed affects the shape and deceleration of the ICME-driven shock. We use shock transit time and shock normal orientation to quantify these dependencies. We also inject identical ICMEs into different ambient solar winds to quantify the effective drag force on an ICME.

The selective determination of sulfates, sulfonates, and phosphates in urine by capillary electrophoresis/mass spectrometry.

PubMed

Bunz, Svenja-Catharina; Neusüß, Christian

2013-01-01

Metabolite identification and metabolite profiling are of major importance in the pharmaceutical and clinical context. However, anions of biological relevance such as sulfates, sulfonates, and phosphates are rarely included in common techniques for metabolite studies. In this protocol, we demonstrate a unique method to selectively determine these anions. The method comprises a capillary electrophoresis separation using an acidic background electrolyte (pH ≤ 2) and anodic detection by mass spectrometry via negative electrospray ionization. In this way, only anions of strong acids like sulfates are determined. The selectivity for sulfur-containing species is proved based on the specific isotopic ratios. In conjunction with the accurate mass from the time-of-flight mass spectrometer, the presented method is well suited for clinical and pharmaceutical applications to identify possible metabolites and to quantify known metabolites.

An analysis of the loads applied to a heavy Space Station rack during translation and rotation tasks

NASA Technical Reports Server (NTRS)

Stoycos, Lara E.; Klute, Glenn K.

1994-01-01

To prepare for Space Station Alpha's on-orbit assembly, maintenance, and resupply, NASA requires information about the crew members' ability to move heavy masses on orbit. Ease of movement in microgravity and orbiter stay time constraints may change the Space Station equipment and outfitting design requirements. Therefore, the time and effort required to perform a particular task and how and where the forces and torque should be applied become critical in evaluating the design effort. Thus, the three main objectives of this investigation were to: (1) quantify variables such as force and torque as they relate to heavy mass handling techniques; (2) predict the time required to perform heavy mass handling tasks; and (3) note any differences between males and females in their ability to manipulate a heavy mass.

VALIDITY OF HYDROSTATIC EQUILIBRIUM IN GALAXY CLUSTERS FROM COSMOLOGICAL HYDRODYNAMICAL SIMULATIONS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Suto, Daichi; Suto, Yasushi; Kawahara, Hajime

2013-04-10

We examine the validity of the hydrostatic equilibrium (HSE) assumption for galaxy clusters using one of the highest-resolution cosmological hydrodynamical simulations. We define and evaluate several effective mass terms corresponding to the Euler equations of gas dynamics, and quantify the degree of the validity of HSE in terms of the mass estimate. We find that the mass estimated under the HSE assumption (the HSE mass) deviates from the true mass by up to {approx}30%. This level of departure from HSE is consistent with the previous claims, but our physical interpretation is rather different. We demonstrate that the inertial term inmore » the Euler equations makes a negligible contribution to the total mass, and the overall gravity of the cluster is balanced by the thermal gas pressure gradient and the gas acceleration term. Indeed, the deviation from the HSE mass is well explained by the acceleration term at almost all radii. We also clarify the confusion of previous work due to the inappropriate application of the Jeans equations in considering the validity of HSE from the gas dynamics extracted from cosmological hydrodynamical simulations.« less

Extraction and analysis of silver and gold nanoparticles from biological tissues using single particle inductively coupled plasma mass spectrometry.

PubMed

Gray, Evan P; Coleman, Jessica G; Bednar, Anthony J; Kennedy, Alan J; Ranville, James F; Higgins, Christopher P

2013-12-17

Expanded use of engineered nanoparticles (ENPs) in consumer products increases the potential for environmental release and unintended biological exposures. As a result, measurement techniques are needed to accurately quantify ENP size, mass, and particle number distributions in biological matrices. This work combines single particle inductively coupled plasma mass spectrometry (spICPMS) with tissue extraction to quantify and characterize metallic ENPs in environmentally relevant biological tissues for the first time. ENPs were extracted from tissues via alkaline digestion using tetramethylammonium hydroxide (TMAH). Method development was performed using ground beef and was verified in Daphnia magna and Lumbriculus variegatus . ENPs investigated include 100 and 60 nm Au and Ag stabilized by polyvynylpyrrolidone (PVP). Mass- and number-based recovery of spiked Au and Ag ENPs was high (83-121%) from all tissues tested. Additional experiments suggested ENP mixtures (60 and 100 nm Ag ENPs) could be extracted and quantitatively analyzed. Biological exposures were also conducted to verify the applicability of the method for aquatic organisms. Size distributions and particle number concentrations were determined for ENPs extracted from D. magna exposed to 98 μg/L 100 nm Au and 4.8 μg/L 100 nm Ag ENPs. The D. magna nanoparticulate body burden for Au ENP uptake was 613 ± 230 μg/kgww, while the measured nanoparticulate body burden for D. magna exposed to Ag ENPs was 59 ± 52 μg/kgww. Notably, the particle size distributions determined from D. magna tissues suggested minimal shifts in the size distributions of ENPs accumulated, as compared to the exposure media.

Physiological condition of bank voles (Myodes glareolus) during the increase and decline phases of the population cycle.

PubMed

Nieminen, Petteri; Huitu, Otso; Henttonen, Heikki; Finnilä, Mikko A J; Voutilainen, Liina; Itämies, Juhani; Kärjä, Vesa; Saarela, Seppo; Halonen, Toivo; Aho, Jari; Mustonen, Anne-Mari

2015-09-01

The dynamics of animal populations are greatly influenced by interactions with their natural enemies and food resources. However, quantifying the relative effects of these factors on demographic rates remains a perpetual challenge for animal population ecology. Food scarcity is assumed to limit the growth and to initiate the decline of cyclic herbivore populations, but this has not been verified with physiological health indices. We hypothesized that individuals in declining populations would exhibit signs of malnutrition-induced deterioration of physiological condition. We evaluated the association of body condition with population cycle phase in bank voles (Myodes glareolus) during the increase and decline phases of a population cycle. The bank voles had lower body masses, condition indices and absolute masses of particular organs during the decline. Simultaneously, they had lower femoral masses, mineral contents and densities. Hemoglobin and hematocrit values and several parameters known to respond to food deprivation were unaffected by the population phase. There were no signs of lymphopenia, eosinophilia, granulocytosis or monocytosis. Erythrocyte counts were higher and plasma total protein levels and tissue proportions of essential polyunsaturated fatty acids lower in the population decline. Ectoparasite load was lower and adrenal gland masses or catecholamine concentrations did not suggest higher stress levels. Food availability seems to limit the size of voles during the decline but they can adapt to the prevailing conditions without clear deleterious health effects. This highlights the importance of quantifying individual health state when evaluating the effects of complex trophic interactions on the dynamics of wild animal populations. Copyright © 2015 Elsevier Inc. All rights reserved.

Quantification of tracer plume transport parameters in 2D saturated porous media by cross-borehole ERT imaging

NASA Astrophysics Data System (ADS)

Lekmine, G.; Auradou, H.; Pessel, M.; Rayner, J. L.

2017-04-01

Cross-borehole ERT imaging was tested to quantify the average velocity and transport parameters of tracer plumes in saturated porous media. Seven tracer tests were performed at different flow rates and monitored by either a vertical or horizontal dipole-dipole ERT sequence. These sequences were tested to reconstruct the shape and temporally follow the spread of the tracer plumes through a background regularization procedure. Data sets were inverted with the same inversion parameters and 2D model sections of resistivity ratios were converted to tracer concentrations. Both array types provided an accurate estimation of the average pore velocity vz. The total mass Mtot recovered was always overestimated by the horizontal dipole-dipole and underestimated by the vertical dipole-dipole. The vertical dipole-dipole was however reliable to quantify the longitudinal dispersivity λz, while the horizontal dipole-dipole returned better estimation for the transverse component λx. λ and Mtot were mainly influenced by the 2D distribution of the cumulated electrical sensitivity and the Shadow Effects induced by the third dimension. The size reduction of the edge of the plume was also related to the inability of the inversion process to reconstruct sharp resistivity contrasts at the interface. Smoothing was counterbalanced by a non-realistic rise of the ERT concentrations around the centre of mass returning overpredicted total masses. A sensitivity analysis on the cementation factor m and the porosity ϕ demonstrated that a change in one of these parameters by 8% involved non negligible variations by 30 and 40% of the dispersion coefficients and mass recovery.

Simultaneous quantification of protein phosphorylation sites using liquid chromatography-tandem mass spectrometry-based targeted proteomics: a linear algebra approach for isobaric phosphopeptides.

PubMed

Xu, Feifei; Yang, Ting; Sheng, Yuan; Zhong, Ting; Yang, Mi; Chen, Yun

2014-12-05

As one of the most studied post-translational modifications (PTM), protein phosphorylation plays an essential role in almost all cellular processes. Current methods are able to predict and determine thousands of phosphorylation sites, whereas stoichiometric quantification of these sites is still challenging. Liquid chromatography coupled with tandem mass spectrometry (LC-MS/MS)-based targeted proteomics is emerging as a promising technique for site-specific quantification of protein phosphorylation using proteolytic peptides as surrogates of proteins. However, several issues may limit its application, one of which relates to the phosphopeptides with different phosphorylation sites and the same mass (i.e., isobaric phosphopeptides). While employment of site-specific product ions allows for these isobaric phosphopeptides to be distinguished and quantified, site-specific product ions are often absent or weak in tandem mass spectra. In this study, linear algebra algorithms were employed as an add-on to targeted proteomics to retrieve information on individual phosphopeptides from their common spectra. To achieve this simultaneous quantification, a LC-MS/MS-based targeted proteomics assay was first developed and validated for each phosphopeptide. Given the slope and intercept of calibration curves of phosphopeptides in each transition, linear algebraic equations were developed. Using a series of mock mixtures prepared with varying concentrations of each phosphopeptide, the reliability of the approach to quantify isobaric phosphopeptides containing multiple phosphorylation sites (≥ 2) was discussed. Finally, we applied this approach to determine the phosphorylation stoichiometry of heat shock protein 27 (HSP27) at Ser78 and Ser82 in breast cancer cells and tissue samples.

Implications for Metabolite Quantification by Mass Spectrometry in the Absence of Authentic Standards.

PubMed

Hatsis, Panos; Waters, Nigel J; Argikar, Upendra A

2017-05-01

Quantification of metabolites by mass spectrometry in the absence of authentic reference standards or without a radiolabel is often called "semiquantitative," which acknowledges that mass spectrometric responses are not truly quantitative. For many researchers, it is tempting to pursue this practice of semiquantification in early drug discovery and even preclinical development, when radiolabeled absorption, distribution, metabolism, and excretion studies are being deferred to later stages of drug development. The caveats of quantifying metabolites based on parent drug response are explored in this investigation. A set of 71 clinically relevant drugs/metabolites encompassing common biotransformation pathways was subjected to flow injection analysis coupled with electrospray ionization (ESI) mass spectrometry. The results revealed a large variation in ESI response even for structurally similar parent drug/metabolite pairs. The ESI response of each metabolite was normalized to that of the parent drug to generate an ESI relative response factor. Overall, relative response factors ranged from 0.014 (>70-fold lower response than parent) to 8.6 (8.6-fold higher response than parent). Various two-dimensional molecular descriptors were calculated that describe physicochemical, topological, and structural properties for each drug/metabolite. The molecular descriptors, along with the ESI response factors, were used in univariate analyses as well as a principal components analysis to ascertain which molecular descriptors best account for the observed discrepancies in drug/metabolite ESI response. This investigation has shown that the practice of using parent drug response to quantify metabolites should be used with caution. Copyright © 2017 by The American Society for Pharmacology and Experimental Therapeutics.

Very Massive Stars in the local Universe

NASA Astrophysics Data System (ADS)

Vink, Jorick S.; Heger, Alexander; Krumholz, Mark R.; Puls, Joachim; Banerjee, S.; Castro, N.; Chen, K.-J.; Chenè, A.-N.; Crowther, P. A.; Daminelli, A.; Gräfener, G.; Groh, J. H.; Hamann, W.-R.; Heap, S.; Herrero, A.; Kaper, L.; Najarro, F.; Oskinova, L. M.; Roman-Lopes, A.; Rosen, A.; Sander, A.; Shirazi, M.; Sugawara, Y.; Tramper, F.; Vanbeveren, D.; Voss, R.; Wofford, A.; Zhang, Y.

2015-03-01

Recent studies have claimed the existence of very massive stars (VMS) up to 300 M ⊙ in the local Universe. As this finding may represent a paradigm shift for the canonical stellar upper-mass limit of 150 M ⊙, it is timely to discuss the status of the data, as well as the far-reaching implications of such objects. We held a Joint Discussion at the General Assembly in Beijing to discuss (i) the determination of the current masses of the most massive stars, (ii) the formation of VMS, (iii) their mass loss, and (iv) their evolution and final fate. The prime aim was to reach broad consensus between observers and theorists on how to identify and quantify the dominant physical processes.

Video measurement of the muzzle velocity of a potato gun

NASA Astrophysics Data System (ADS)

Jasperson, Christopher; Pollman, Anthony

2011-09-01

Using first principles, a theoretical equation for the maximum and actual muzzle velocities for a pneumatic cannon was recently derived. For a fixed barrel length, this equation suggests that the muzzle velocity can be enhanced by maximizing the product of the initial pressure and the volume of the propellant gas and decreasing the projectile mass. The present paper describes the results of experiments conducted to verify the validity of this theoretical equation. A high-speed video camera was used to quantify muzzle velocity for potatoes of varying mass exiting a pneumatic cannon for gauge pressures ranging from 310 to 830 kPa. The experiments verified that a friction modified version of the theoretical equation is qualitatively and quantitatively accurate for potato masses above 100 g.

Data worth and prediction uncertainty for pesticide transport and fate models in Nebraska and Maryland, United States

USDA-ARS?s Scientific Manuscript database

Few studies have attempted to quantify mass balances of both pesticides and degradates in multiple agricultural settings of the United States. We used inverse modeling to calibrate the Root Zone Water Quality Model (RZWQM) for predicting the unsaturated-zone transport and fate of metolachlor, metola...

Scale-dependency of LiDAR derived terrain attributes in quantitative soil-landscape modeling: Effects of grid resolution vs. neighborhood extent

EPA Science Inventory

Quantifying the spatial distribution of soil properties is essential for ecological and environmental modeling at the landscape scale. Terrain attributes are one of the primary covariates in soil-landscape models due to their control on energy and mass fluxes, which in turn contr...

Measurement of Trace Elements During the Development and Immune Response of Heliothis virescens Larvae

USDA-ARS?s Scientific Manuscript database

While many studies have examined the effect of microbial infections on the status of trace elements in mammalian tissues, similar studies have not been performed in insects. We used inductively coupled plasma-mass spectrometry (ICP-MS) to quantify changes in trace elements of Mg, Mn, Fe, Cu, Zn and ...

Quantification and source apportionment of the methane emission flux from the city of Indianapolis

USDA-ARS?s Scientific Manuscript database

We report the CH4 emission flux from the city of Indianapolis, IN, the site of the Indianapolis Flux Experiment (INFLUX) project for developing, assessing, and improving top-down and bottom-up approaches for quantifying urban greenhouse gas emissions. Using an aircraft-based mass balance approach, w...

Quantification of the molecular species of diacylglycerols,triacylglycerols and tetraacylglycerols in lesquerella (Physaria fendleri) oil by HPLC and MS

USDA-ARS?s Scientific Manuscript database

Ten diacylglycerols (DAG), 74 triacylglycerols (TAG) and 13 tetraacylglycerols in the seed oil of Physaria fendleri were recently identified by HPLC and MS. These acylglycerols (AG) were quantified by HPLC with evaporative light scattering detector and electrospray ionization mass spectrometry of th...

A portable system for characterizing wildland fire behavior

Treesearch

Bret Butler; D. Jimenez; J. Forthofer; K. Shannon; Paul Sopko

2010-01-01

A field deployable system for quantifying energy and mass transport in wildland fires is described. The system consists of two enclosures: The first is a sensor/data logger combination package that allows characterization of convective/radiant energy transport in fires. This package contains batteries, a programmable data logger, sensors, and other electronics. The...

Source sampling of particulate matter emissions from cotton harvesting - System field testing and emission factor development

USDA-ARS?s Scientific Manuscript database

Emission factors are used in the air pollution regulatory process to quantify the mass of pollutants emitted from a source. Accurate emission factors must be used in the air pollution regulatory process to ensure fair and appropriate regulation for all sources. Agricultural sources, including cotton...

Calibration and performance of synchronous SIM/scan mode for simultaneous targeted and discovery (non-targeted) analysis of exhaled breath samples from firefighters

EPA Science Inventory

Traditionally, gas chromatography – mass spectrometry (GC-MS) analysis has used a targeted approach called selected ion monitoring (SIM) to quantify specific compounds that may have adverse health effects. Due to method limitations and the constraints of preparing duplicat...

Modeling of highway stormwater runoff.

PubMed

Kim, Lee-Hyung; Kayhanian, Masoud; Zoh, Kyung-Duk; Stenstrom, Michael K

2005-09-15

Highways are stormwater intensive landuses since they are impervious and have high pollutant mass emissions from vehicular activity. Vehicle emissions include different pollutants such as heavy metals, oil and grease, particulates from sources such as fuels, brake pad wear and tire wear, and litter. To understand the magnitude and nature of the stormwater emissions, a 3-year study was conducted to quantify stormwater pollutant concentrations, mass emission rates, and the first flush of pollutants. Eight highway sites were monitored over 3 years for a large suite of pollutants. The monitoring protocol emphasized detecting the first flush and quantifying the event mean concentration. Grab and flow-weighted composite samples, rainfall, and runoff data were collected. A new runoff model with four parameters was developed that to describe the first flush of pollutants for a variety of rainfall and runoff conditions. The model was applied to more than 40 events for 8 pollutants, and the parameters were correlated to storm and site conditions, such as total runoff, antecedent dry days, and runoff coefficient. Improved definitions of first flush criteria are also presented.

Volatile aroma compounds in various brewed green teas.

PubMed

Lee, Jeehyun; Chambers, Delores H; Chambers, Edgar; Adhikari, Koushik; Yoon, Youngmo

2013-08-20

This study identifies and semi-quantifies aroma volatiles in brewed green tea samples. The objectives of this study were to identify using a gas chromatograph-mass spectrometer (GC-MS) paired with a headspace solid-phase micro-extraction (HS-SPME) the common volatile compounds that may be responsible for aroma/flavor of the brewed liquor of a range of green tea samples from various countries as consumed and to determine if green teas from the same region have similarities in volatile composition when green tea samples are prepared for consumption. Twenty-four green tea samples from eight different countries were brewed as recommended for consumer brewing. The aroma volatiles were extracted by HS-SPME, separated on a gas chromatograph and identified using a mass spectrometer. Thirty-eight compounds were identified and the concentrations were semi-quantified. The concentrations were lower than those reported by other researchers, probably because this research examined headspace volatiles from brewed tea rather than solvent extraction of leaves. No relationship to country of origin was found, which indicates that other factors have a greater influence than country of origin on aroma.

Extreme methane emissions from a Swiss hydropower reservoir: contribution from bubbling sediments.

PubMed

Delsontro, Tonya; McGinnis, Daniel F; Sobek, Sebastian; Ostrovsky, Ilia; Wehrli, Bernhard

2010-04-01

Methane emission pathways and their importance were quantified during a yearlong survey of a temperate hydropower reservoir. Measurements using gas traps indicated very high ebullition rates, but due to the stochastic nature of ebullition a mass balance approach was crucial to deduce system-wide methane sources and losses. Methane diffusion from the sediment was generally low and seasonally stable and did not account for the high concentration of dissolved methane measured in the reservoir discharge. A strong positive correlation between water temperature and the observed dissolved methane concentration enabled us to quantify the dissolved methane addition from bubble dissolution using a system-wide mass balance. Finally, knowing the contribution due to bubble dissolution, we used a bubble model to estimate bubble emission directly to the atmosphere. Our results indicated that the total methane emission from Lake Wohlen was on average >150 mg CH(4) m(-2) d(-1), which is the highest ever documented for a midlatitude reservoir. The substantial temperature-dependent methane emissions discovered in this 90-year-old reservoir indicate that temperate water bodies can be an important but overlooked methane source.

Effect of Voltage Level on Power System Design for Solar Electric Propulsion Missions

NASA Technical Reports Server (NTRS)

Kerslake, Thomas W.

2003-01-01

This paper presents study results quantifying the benefits of higher voltage, electric power system designs for a typical solar electric propulsion spacecraft Earth orbiting mission. A conceptual power system architecture was defined and design points were generated for system voltages of 28-V, 50-V, 120-V, and 300-V using state-of-the-art or advanced technologies. A 300-V 'direct-drive' architecture was also analyzed to assess the benefits of directly powering the electric thruster from the photovoltaic array without up-conversion. Fortran and spreadsheet computational models were exercised to predict the performance and size power system components to meet spacecraft mission requirements. Pertinent space environments, such as electron and proton radiation, were calculated along the spiral trajectory. In addition, a simplified electron current collection model was developed to estimate photovoltaic array losses for the orbital plasma environment and that created by the thruster plume. The secondary benefits of power system mass savings for spacecraft propulsion and attitude control systems were also quantified. Results indicate that considerable spacecraft wet mass savings were achieved by the 300-V and 300-V direct-drive architectures.

Determination of terpenoid content in pine by organic solvent extraction and fast-GC analysis

DOE PAGES

Harman-Ware, Anne E.; Sykes, Robert; Peter, Gary F.; ...

2016-01-25

Terpenoids, naturally occurring compounds derived from isoprene units present in pine oleoresin, are a valuable source of chemicals used in solvents, fragrances, flavors, and have shown potential use as a biofuel. This paper describes a method to extract and analyze the terpenoids present in loblolly pine saplings and pine lighter wood. Various extraction solvents were tested over different times and temperatures. Samples were analyzed by pyrolysis-molecular beam mass spectrometry before and after extractions to monitor the extraction efficiency. The pyrolysis studies indicated that the optimal extraction method used a 1:1 hexane/acetone solvent system at 22°C for 1 h. Extracts frommore » the hexane/acetone experiments were analyzed using a low thermal mass modular accelerated column heater for fast-GC/FID analysis. The most abundant terpenoids from the pine samples were quantified, using standard curves, and included the monoterpenes, α- and β-pinene, camphene, and δ-carene. Sesquiterpenes analyzed included caryophyllene, humulene, and α-bisabolene. In conclusion, diterpenoid resin acids were quantified in derivatized extractions, including pimaric, isopimaric, levopimaric, palustric, dehydroabietic, abietic, and neoabietic acids.« less

Simultaneous quantification of eight bioactive components of Houttuynia cordata and related Saururaceae medicinal plants by on-line high performance liquid chromatography-diode array detector-electrospray mass spectrometry.

PubMed

Meng, Jiang; Leung, Kelvin Sze-Yin; Dong, Xiao-Ping; Zhou, Yi-Sheng; Jiang, Zhi-Hong; Zhao, Zhong-Zhen

2009-12-01

An on-line high performance liquid chromatography (HPLC)-diode array detector (DAD)-electrospray ionization mass spectrometry (ESI-MS) method has been developed to quantify simultaneously eight bioactive chemical components in Houttuynia cordata Thunb and related Saururaceae medicinal plants. Simultaneous separation of these eight compounds was achieved on a C(18) analytical column with gradient elution of acetonitrile and 0.2% acetic acid (v/v) at a flow rate of 0.6 mL/min and being detected at 280 nm. These eight compounds were completely separated within 90 min. Good linear regression relationship (r(2)>0.9978) within test ranges was shown in all calibration curves. Good repeatabilty for the quantification of these eight compounds in H.cordata was also demonstrated in this method, with intra- and inter-day variations less than 3.0%. The method established was successfully applied to quantify eight bioactive compounds in closely related species of H.cordata, which provides a new basis for quality assessment of H.cordata.

Analysis of volatile thiols in alcoholic beverages by simultaneous derivatization/extraction and liquid chromatography-high resolution mass spectrometry.

PubMed

Vichi, Stefania; Cortés-Francisco, Nuria; Caixach, Josep

2015-05-15

A simultaneous derivatization/extraction method followed by liquid chromatography-electrospray-high resolution mass spectrometry for the determination of volatile thiols in hydroalcoholic matrixes was optimized and used to identify and quantify volatile thiols in wine and beer samples. The method was evaluated in terms of sensitivity, precision, accuracy and selectivity. The experimental LOQs of eleven thiols tested ranged between 0.01 ng/L and 10 ng/L. Intra-day relative standard deviation (RSD) was in general lower than 10% and inter-day RSD ranged between 10% and 30%. Recovery in the model and real matrixes ranged from 45% to 129%. The method was then applied for the analysis of four white wines and six beers. Five out of the eleven reference thiols were identified and quantified in the samples analyzed. The non-target approach, carried out by monitoring the diagnostic ion at m/z 275.9922 [C13H10ONSe](+) in the fragmentation spectrum, allowed detecting, in the same samples, fourteen non-target thiols. Copyright © 2014 Elsevier Ltd. All rights reserved.

An MRM-based workflow for quantifying cardiac mitochondrial protein phosphorylation in murine and human tissue.

PubMed

Lam, Maggie P Y; Scruggs, Sarah B; Kim, Tae-Young; Zong, Chenggong; Lau, Edward; Wang, Ding; Ryan, Christopher M; Faull, Kym F; Ping, Peipei

2012-08-03

The regulation of mitochondrial function is essential for cardiomyocyte adaptation to cellular stress. While it has long been understood that phosphorylation regulates flux through metabolic pathways, novel phosphorylation sites are continually being discovered in all functionally distinct areas of the mitochondrial proteome. Extracting biologically meaningful information from these phosphorylation sites requires an adaptable, sensitive, specific and robust method for their quantification. Here we report a multiple reaction monitoring-based mass spectrometric workflow for quantifying site-specific phosphorylation of mitochondrial proteins. Specifically, chromatographic and mass spectrometric conditions for 68 transitions derived from 23 murine and human phosphopeptides, and their corresponding unmodified peptides, were optimized. These methods enabled the quantification of endogenous phosphopeptides from the outer mitochondrial membrane protein VDAC, and the inner membrane proteins ANT and ETC complexes I, III and V. The development of this quantitative workflow is a pivotal step for advancing our knowledge and understanding of the regulatory effects of mitochondrial protein phosphorylation in cardiac physiology and pathophysiology. This article is part of a Special Issue entitled: Translational Proteomics. Copyright © 2012 Elsevier B.V. All rights reserved.

Aroma Volatile Compounds from Two Fresh Pineapple Varieties in China

PubMed Central

Zheng, Liang-Yong; Sun, Guang-Ming; Liu, Yu-Ge; Lv, Ling-Ling; Yang, Wen-Xiu; Zhao, Wei-Feng; Wei, Chang-Bin

2012-01-01

Volatile compounds from two pineapples varieties (Tainong No.4 and No.6) were isolated by headspace solid phase microextraction (HS-SPME) and identified and quantified by gas chromatography-mass spectrometry (GC/MS). In the Tainong No. 4 and No. 6 pineapples, a total of 11 and 28 volatile compounds were identified according to their retention time on capillary columns and their mass spectra, and quantified with total concentrations of 1080.44 μg·kg−1 and 380.66 μg·kg−1 in the Tainong No.4 and No. 6 pineapples, respectively. The odor active values (OAVs) of volatile compounds from pineapples were also calculated. According to the OAVs, four compounds were defined as the characteristic aroma compounds for the Tainong No. 4 pineapple, including furaneol, 3-(methylthio)propanoic acid methyl ester, 3-(methylthio)propanoic acid ethyl ester and δ-octalactone. The OAVs of five compounds including ethyl-2-methylbutyrate, methyl-2-methylbutyrate, 3-(methylthio)propanoic acid ethyl ester, ethyl hexanoate and decanal were considered to be the characteristic aroma compounds for the Tainong No. 6 pineapple. PMID:22837701

Effect of temperature and cultivar on polyphenol retention and mass transfer during osmotic dehydration of apples.

PubMed

Devic, Emilie; Guyot, Sylvain; Daudin, Jean-Dominique; Bonazzi, Catherine

2010-01-13

Several cultivars of apples (Malus domestica) were chosen for their variable concentrations and compositions in phenolic compounds. Cubed samples (1 cm3) were subjected to osmotic dehydration, and the effect of temperature was studied at 45 and 60 degrees C. Water loss, sucrose impregnation, and the evolution of some natural components of the product were followed to quantify mass transfer. Ascorbic acid and polyphenols were quantified by HPLC for several osmotic dehydration times and regardless of the quantity of impregnated sugar. Changes in antioxidant components differed as a function of the nature of molecules. Their concentrations decreased in line with temperature, and few differences were observed between cultivars. Processing at a lower temperature (45 degrees C) caused a total loss in ascorbic acid but allowed the retention of between 74 and 85% of initial polyphenols, depending on the cultivar. Cultivars containing highly polymerized procyanidins (such as Guillevic) experienced less loss. Hydroxycinnamic acids and monomeric catechins displayed the most marked changes. Leaching with water into the soaking solution was the principal mechanism retained to explain these losses.

Characterization of Sugar and Polyphenolic Diversity in Floral Nectar of Different 'Oblačinska' Sour Cherry Clones.

PubMed

Guffa, Basem; Nedić, Nebojša M; Dabić Zagorac, Dragana Č; Tosti, Tomislav B; Gašić, Uroš M; Natić, Maja M; Fotirić Akšić, Milica M

2017-09-01

'Oblačinska' sour cherry, an autochthonous cultivar, is the most planted cultivar in Serbian orchards. Since fruit trees in temperate zone reward insects by producing nectar which 'quality' affects the efficiency of insect pollination, the aim of this study was analyzing of sugars and polyphenolics in floral nectar of 16 'Oblačinska' sour cherry clones with different yielding potential. The contents of sugars and sugar alcohols were analyzed by ion chromatography, while polyphenolic profile was established using liquid chromatography/mass spectrometry technique. Fourteen sugars and six sugar alcohols were detected in nectar samples and the most abundant were fructose, glucose, and sucrose. Eleven polyphenols were quantified using available standards, while another 17 were identified according to their exact masses and characteristic fragmentations. Among quantified polyphenols, rutin, naringenin, and chrysin were the most abundant in nectar. Principal component analysis showed that some polyphenol components (naringin, naringenin, and rutin) together with sugars had high impact of spatial distribution of nectar samples on score plot. © 2017 Wiley-VHCA AG, Zurich, Switzerland.

Development and Validation of a Multiplexed Protein Quantitation Assay for the Determination of Three Recombinant Proteins in Soybean Tissues by Liquid Chromatography with Tandem Mass Spectrometry.

PubMed

Hill, Ryan C; Oman, Trent J; Shan, Guomin; Schafer, Barry; Eble, Julie; Chen, Cynthia

2015-08-26

Currently, traditional immunochemistry technologies such as enzyme-linked immunosorbent assays (ELISA) are the predominant analytical tool used to measure levels of recombinant proteins expressed in genetically engineered (GE) plants. Recent advances in agricultural biotechnology have created a need to develop methods capable of selectively detecting and quantifying multiple proteins in complex matrices because of increasing numbers of transgenic proteins being coexpressed or "stacked" to achieve tolerance to multiple herbicides or to provide multiple modes of action for insect control. A multiplexing analytical method utilizing liquid chromatography with tandem mass spectrometry (LC-MS/MS) has been developed and validated to quantify three herbicide-tolerant proteins in soybean tissues: aryloxyalkanoate dioxygenase (AAD-12), 5-enol-pyruvylshikimate-3-phosphate synthase (2mEPSPS), and phosphinothricin acetyltransferase (PAT). Results from the validation showed high recovery and precision over multiple analysts and laboratories. Results from this method were comparable to those obtained with ELISA with respect to protein quantitation, and the described method was demonstrated to be suitable for multiplex quantitation of transgenic proteins in GE crops.

Simultaneous quantification of 25 active constituents in the total flavonoids extract from Herba Desmodii Styracifolii by high-performance liquid chromatography with electrospray ionization tandem mass spectrometry.

PubMed

Guo, Panpan; Yan, Wenying; Han, Qingjie; Wang, Chunying; Zhang, Zijian

2015-04-01

A sensitive and selective high-performance liquid chromatography coupled with electrospray ionization tandem mass spectrometry method has been developed and validated for the simultaneous determination of 25 active constituents, including 21 flavonoids and four phenolic acids in the total flavonoids extract from Herba Desmodii Styracifolii for the first time. Among the 25 compounds, seven compounds including caffeic acid, acacetin, genistein, genistin, diosmetin, diosmin and hesperidin were identified and quantified for the first time in Herba Desmodii Styracifolii. Chromatographic separation was accomplished on a ZORBAX SB-C18 (250 mm×4.6 mm, 5.0 μm) column using gradient elution of methanol and 0.1‰ acetic acid v/v at a flow rate of 1.0 mL/min. The identification and quantification of the analytes were achieved using negative electrospray ionization mass spectrometry in multiple-reaction monitoring mode. The method was fully validated in terms of limits of detection and quantification, linearity, precision and accuracy. The results indicated that the developed method is simple, rapid, specific and reliable. Furthermore, the developed method was successfully applied to quantify the 25 active components in six batches of total flavonoids extract from Herba Desmodii Styracifolii. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Correlation between y-type ions observed in ion trap and triple quadrupole mass spectrometers.

PubMed

Sherwood, Carly A; Eastham, Ashley; Lee, Lik Wee; Risler, Jenni; Vitek, Olga; Martin, Daniel B

2009-09-01

Multiple reaction monitoring mass spectrometry (MRM-MS) is a technique for high-sensitivity targeted analysis. In proteomics, MRM-MS can be used to monitor and quantify a peptide based on the production of expected fragment peaks from the selected peptide precursor ion. The choice of which fragment ions to monitor in order to achieve maximum sensitivity in MRM-MS can potentially be guided by existing MS/MS spectra. However, because the majority of discovery experiments are performed on ion trap platforms, there is concern in the field regarding the generalizability of these spectra to MRM-MS on a triple quadrupole instrument. In light of this concern, many operators perform an optimization step to determine the most intense fragments for a target peptide on a triple quadrupole mass spectrometer. We have addressed this issue by targeting, on a triple quadrupole, the top six y-ion peaks from ion trap-derived consensus library spectra for 258 doubly charged peptides from three different sample sets and quantifying the observed elution curves. This analysis revealed a strong correlation between the y-ion peak rank order and relative intensity across platforms. This suggests that y-type ions obtained from ion trap-based library spectra are well-suited for generating MRM-MS assays for triple quadrupoles and that optimization is not required for each target peptide.

Quantification of the IgG2/4 kappa Monoclonal Therapeutic Eculizumab from Serum Using Isotype Specific Affinity Purification and Microflow LC-ESI-Q-TOF Mass Spectrometry.

PubMed

Ladwig, Paula M; Barnidge, David R; Willrich, Maria A V

2017-05-01

As therapeutic monoclonal antibodies (mAbs) become more humanized, traditional tryptic peptide approaches used to measure biologics in serum become more challenging since unique clonotypic peptides used for quantifying the mAb may also be found in the normal serum polyclonal background. An alternative approach is to monitor the unique molecular mass of the intact light chain portion of the mAbs using liquid chromatography-mass spectrometry (LC-MS). Distinguishing a therapeutic mAb from a patient's normal polyclonal immunoglobulin (Ig) repertoire is the primary limiting factor when determining the limit of quantitation (LOQ) in serum. The ability to selectively extract subclass specific Igs from serum reduces the polyclonal background in a sample. We present here the development of an LC-MS method to quantify eculizumab in serum. Eculizumab is a complement component 5 (C5) binding mAb that is fully humanized and contains portions of both IgG2 and IgG4 subclasses. Our group developed a method that uses Life Technologies CaptureSelect IgG4 (Hu) affinity matrix. We show here the ability to quantitate eculizumab with a LOQ of 5 mcg/mL by removing the higher abundance IgG1, IgG2, and IgG3 from the polyclonal background, making this approach a simple and efficient procedure. Graphical Abstract ᅟ.

Quantification of volatile compounds released by roasted coffee by selected ion flow tube mass spectrometry.

PubMed

Dryahina, Kseniya; Smith, David; Španěl, Patrik

2018-05-15

The major objective of this exploratory study was to implement selected ion flow tube mass spectrometry, SIFT-MS, as a method for the on-line quantification of the volatile organic compounds, VOCs, in the headspace of the ground roasted coffee. The optimal precursor ions and characteristic analyte ions were selected for real-time SIFT-MS quantification of those VOCs that are the most abundant in the headspace or known to contribute to aroma. NO + reagent ion reactions were exploited for most of the VOC analyses. VOC identifications were confirmed using gas chromatography/mass spectrometry, GC/MS, coupled with solid-phase microextraction, SPME. Thirty-one VOCs were quantified, including several alcohols, aldehydes, ketones, carboxylic acids, esters and some heterocyclic compounds. Variations in the concentrations of each VOC in the seven regional coffees were typically less than a factor of 2, yet concentrations patterns characteristic of the different regional coffees were revealed by heat map and principal component analyses. The coefficient of variation in the concentrations across the seven coffees was typically below 24% except for furfural, furan, methylfuran and guaiacol. The SIFT-MS analytical method can be used to quantify in real time the most important odoriferous VOCs in ground coffee headspace to sufficient precision to reveal some differences in concentration patterns for coffee produced in different countries. Copyright © 2018 John Wiley & Sons, Ltd.

In situ redox manipulation of subsurface sediments from Fort Lewis, Washington: Iron reduction and TCE dechlorination mechanisms

DOE Office of Scientific and Technical Information (OSTI.GOV)

JE Szecsody; JS Fruchter; DS Sklarew

2000-03-21

Pacific Northwest National Laboratory (PNNL) conducted a bench-scale study to determine how effective chemically treated Ft. Lewis sediments can degrade trichloroethylene (TCE). The objectives of this experimental study were to quantify: (1) sediment reduction and oxidation reactions, (2) TCE degradation reactions, and (3) other significant geochemical changes that occurred. Sediment reduction and oxidation were investigated to determine the mass of reducible iron in the Ft. Lewis sediments and the rate of this reduction and subsequent oxidation at different temperatures. The temperature dependence was needed to be able to predict field-scale reduction in the relatively cold ({approximately}11 C) Ft. Lewis aquifer.more » Results of these experiments were used in conjunction with other geochemical and hydraulic characterization to design the field-scale injection experiment and predict barrier longevity. For example, the sediment reduction rate controls the amount of time required for the dithionite solution to fully react with sediments. Sediment oxidation experiments were additionally conducted to determine the oxidation rate and provide a separate measure of the mass of reduced iron. Laboratory experiments that were used to meet these objectives included: (1) sediment reduction in batch (static) systems, (2) sediment reduction in 1-D columns, and (3) sediment oxidation in 1-D columns. Multiple reaction modeling was conducted to quantify the reactant masses and reaction rates.« less

Quantification of the IgG2/4 kappa Monoclonal Therapeutic Eculizumab from Serum Using Isotype Specific Affinity Purification and Microflow LC-ESI-Q-TOF Mass Spectrometry

NASA Astrophysics Data System (ADS)

Ladwig, Paula M.; Barnidge, David R.; Willrich, Maria A. V.

2017-05-01

As therapeutic monoclonal antibodies (mAbs) become more humanized, traditional tryptic peptide approaches used to measure biologics in serum become more challenging since unique clonotypic peptides used for quantifying the mAb may also be found in the normal serum polyclonal background. An alternative approach is to monitor the unique molecular mass of the intact light chain portion of the mAbs using liquid chromatography-mass spectrometry (LC-MS). Distinguishing a therapeutic mAb from a patient's normal polyclonal immunoglobulin (Ig) repertoire is the primary limiting factor when determining the limit of quantitation (LOQ) in serum. The ability to selectively extract subclass specific Igs from serum reduces the polyclonal background in a sample. We present here the development of an LC-MS method to quantify eculizumab in serum. Eculizumab is a complement component 5 (C5) binding mAb that is fully humanized and contains portions of both IgG2 and IgG4 subclasses. Our group developed a method that uses Life Technologies CaptureSelect IgG4 (Hu) affinity matrix. We show here the ability to quantitate eculizumab with a LOQ of 5 mcg/mL by removing the higher abundance IgG1, IgG2, and IgG3 from the polyclonal background, making this approach a simple and efficient procedure.

Quantifying black carbon light absorption enhancement with a novel statistical approach

NASA Astrophysics Data System (ADS)

Wu, Cheng; Wu, Dui; Zhen Yu, Jian

2018-01-01

Black carbon (BC) particles in the atmosphere can absorb more light when coated by non-absorbing or weakly absorbing materials during atmospheric aging, due to the lensing effect. In this study, the light absorption enhancement factor, Eabs, was quantified using a 1-year measurement of mass absorption efficiency (MAE) in the Pearl River Delta region (PRD). A new approach for calculating primary MAE (MAEp), the key for Eabs estimation, is demonstrated using the minimum R squared (MRS) method, exploring the inherent source independency between BC and its coating materials. A unique feature of Eabs estimation with the MRS approach is its insensitivity to systematic biases in elemental carbon (EC) and σabs measurements. The annual average Eabs550 is found to be 1.50 ± 0.48 (±1 SD) in the PRD region, exhibiting a clear seasonal pattern with higher values in summer and lower in winter. Elevated Eabs in the summertime is likely associated with aged air masses, predominantly of marine origin, along with long-range transport of biomass-burning-influenced air masses from Southeast Asia. Core-shell Mie simulations along with measured Eabs and absorption Ångström exponent (AAE) constraints suggest that in the PRD, the coating materials are unlikely to be dominated by brown carbon and the coating thickness is higher in the rainy season than in the dry season.

Quantification of flavonol glycosides in Camellia sinensis by MRM mode of UPLC-QQQ-MS/MS.

PubMed

Wu, Yahui; Jiang, Xiaolan; Zhang, Shuxiang; Dai, Xinlong; Liu, Yajun; Tan, Huarong; Gao, Liping; Xia, Tao

2016-04-01

Phenolic compounds are major components of tea flavour, in which catechins and flavonol glycosides play important roles in the astringent taste of tea infusion. However, the flavonol glycosides are difficult to quantify because of the large variety, as well as the inefficient seperation on chromatography. In this paper, a total of 15 flavonol glycosides in the tea plant (Camellia sinensis) were identified by the high performance liquid chromatography (HPLC) coupled to a time-of-flight mass spectrometer (TOF-MS), and a quantitative method was established based on multiple reaction monitoring (MRM) mode of ultra-high performance liquid chromatography (UPLC) coupled to a triple quadrupole mass spectrometer (QQQ-MS/MS). It provided the limit of detection and quantification to the order of picogram, which was more sensitive than the HPLC detection of the order of nanogram. The relative standard deviations of the intra- and inter-day variations in retention time and signal intensity (peak area) of six analytes were less than 0.26% and 4%, respectively. The flavonol glycosides of four tea cultivars were relatively quantified using the signal intensity (peak area) of product ion, in which six flavonol glycosides were quantified by the authentic standards. The results showed that the flavonol mono-, di- and tri-glycoside mostly accumulated in young leaves of the four tea cultivars. Notably, the myricetin 3-O-galactoside was the major component among the six flavonol glycosides detected. Copyright © 2016 Elsevier B.V. All rights reserved.

The reliability and validity of ultrasound to quantify muscles in older adults: a systematic review

PubMed Central

Scafoglieri, Aldo; Jager‐Wittenaar, Harriët; Hobbelen, Johannes S.M.; van der Schans, Cees P.

2017-01-01

Abstract This review evaluates the reliability and validity of ultrasound to quantify muscles in older adults. The databases PubMed, Cochrane, and Cumulative Index to Nursing and Allied Health Literature were systematically searched for studies. In 17 studies, the reliability (n = 13) and validity (n = 8) of ultrasound to quantify muscles in community‐dwelling older adults (≥60 years) or a clinical population were evaluated. Four out of 13 reliability studies investigated both intra‐rater and inter‐rater reliability. Intraclass correlation coefficient (ICC) scores for reliability ranged from −0.26 to 1.00. The highest ICC scores were found for the vastus lateralis, rectus femoris, upper arm anterior, and the trunk (ICC = 0.72 to 1.000). All included validity studies found ICC scores ranging from 0.92 to 0.999. Two studies describing the validity of ultrasound to predict lean body mass showed good validity as compared with dual‐energy X‐ray absorptiometry (r 2 = 0.92 to 0.96). This systematic review shows that ultrasound is a reliable and valid tool for the assessment of muscle size in older adults. More high‐quality research is required to confirm these findings in both clinical and healthy populations. Furthermore, ultrasound assessment of small muscles needs further evaluation. Ultrasound to predict lean body mass is feasible; however, future research is required to validate prediction equations in older adults with varying function and health. PMID:28703496

A dilute-and-shoot flow-injection tandem mass spectrometry method for quantification of phenobarbital in urine.

PubMed

Alagandula, Ravali; Zhou, Xiang; Guo, Baochuan

2017-01-15

Liquid chromatography/tandem mass spectrometry (LC/MS/MS) is the gold standard of urine drug testing. However, current LC-based methods are time consuming, limiting the throughput of MS-based testing and increasing the cost. This is particularly problematic for quantification of drugs such as phenobarbital, which is often analyzed in a separate run because they must be negatively ionized. This study examined the feasibility of using a dilute-and-shoot flow-injection method without LC separation to quantify drugs with phenobarbital as a model system. Briefly, a urine sample containing phenobarbital was first diluted by 10 times, followed by flow injection of the diluted sample to mass spectrometer. Quantification and detection of phenobarbital were achieved by an electrospray negative ionization MS/MS system operated in the multiple reaction monitoring (MRM) mode with the stable-isotope-labeled drug as internal standard. The dilute-and-shoot flow-injection method developed was linear with a dynamic range of 50-2000 ng/mL of phenobarbital and correlation coefficient > 0.9996. The coefficients of variation and relative errors for intra- and inter-assays at four quality control (QC) levels (50, 125, 445 and 1600 ng/mL) were 3.0% and 5.0%, respectively. The total run time to quantify one sample was 2 min, and the sensitivity and specificity of the method did not deteriorate even after 1200 consecutive injections. Our method can accurately and robustly quantify phenobarbital in urine without LC separation. Because of its 2 min run time, the method can process 720 samples per day. This feasibility study shows that the dilute-and-shoot flow-injection method can be a general way for fast analysis of drugs in urine. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

Multiscale quantification of tissue spiculation and distortion for detection of architectural distortion and spiculated mass in mammography

NASA Astrophysics Data System (ADS)

Lao, Zhiqiang; Zheng, Xin

2011-03-01

This paper proposes a multiscale method to quantify tissue spiculation and distortion in mammography CAD systems that aims at improving the sensitivity in detecting architectural distortion and spiculated mass. This approach addresses the difficulty of predetermining the neighborhood size for feature extraction in characterizing lesions demonstrating spiculated mass/architectural distortion that may appear in different sizes. The quantification is based on the recognition of tissue spiculation and distortion pattern using multiscale first-order phase portrait model in texture orientation field generated by Gabor filter bank. A feature map is generated based on the multiscale quantification for each mammogram and two features are then extracted from the feature map. These two features will be combined with other mass features to provide enhanced discriminate ability in detecting lesions demonstrating spiculated mass and architectural distortion. The efficiency and efficacy of the proposed method are demonstrated with results obtained by applying the method to over 500 cancer cases and over 1000 normal cases.

Measurement of rock mass deformation with grouted coaxial antenna cables

NASA Astrophysics Data System (ADS)

Dowding, C. H.; Su, M. B.; O'Connor, K.

1989-01-01

Techniques presented herein show how reflected voltage pulses from coaxial antenna cable grouted in rock masses can be employed to quantify the type and magnitude of rock mass deformation. This measurement is similar to that obtained from a combined full profile extensometer (to measure local extension) and inclinometer (to measure local shearing). Rock mass movements deform the grouted cable, which locally changes cable capacitance and thereby the reflected wave form of the voltage pulse. Thus, by monitoring changes in these reflection signatures, it is possible to monitor rock mass deformation. This paper presents laboratory measurements necessary to quantitatively interpret the reflected voltage signatures. Cables were sheared and extended to correlate measured cable deformation with reflected voltage signals. Laboratory testing included development of grout mixtures with optimum properties for field installation and performance of a TDR (Time Domain Reflectometry) monitoring system. Finally, the interpretive techniques developed through laboratory measurements were applied to previously collected field data to extract hitherto unrealized information.

Comparison of ocean mass content change from direct and inversion based approaches

NASA Astrophysics Data System (ADS)

Uebbing, Bernd; Kusche, Jürgen; Rietbroek, Roelof

2017-04-01

The GRACE satellite mission provides an indispensable tool for measuring oceanic mass variations. Such time series are essential to separate global mean sea level rise in thermosteric and mass driven contributions, and thus to constrain ocean heat content and (deep) ocean warming when viewed together with altimetry and Argo data. However, published estimates over the GRACE era differ, not only depending on the time window considered. Here, we will look into sources of such differences with direct and inverse approaches. Deriving ocean mass time series requires several processing steps; choosing a GRACE (and altimetry and Argo) product, data coverage, masks and filters to be applied in either spatial or spectral domain, corrections related to spatial leakage, GIA and geocenter motion need to be accounted for. In this study, we quantify the effects of individual processing choices and assumptions of the direct and inversion based approaches to derive ocean mass content change. Furthermore, we compile the different estimates from existing literature and sources, to highlight the differences.

Quantification of free convection effects on 1 kg mass standards

NASA Astrophysics Data System (ADS)

Schreiber, M.; Emran, M. S.; Fröhlich, T.; Schumacher, J.; Thess, A.

2015-12-01

We determine the free-convection effects and the resulting mass differences in a high-precision mass comparator for cylindrical and spherical 1 kg mass standards at different air pressures. The temperature differences are chosen in the millikelvin range and lead to microgram updrafts. Our studies reveal a good agreement between the measurements and direct numerical simulations of the Boussinesq equations of free thermal convection. A higher sensitivity to the free convection effects is found for the spherical case compared to the cylindrical one. We also translate our results on the free convection effects into a form which is used in fluid mechanics: a dimensionless updraft coefficient as a function of the dimensionless Grashof number Gr that quantifies the thermal driving due to temperature differences. This relation displays a unique scaling behavior over nearly four decades in Gr and levels off into geometry-specific constants for the very small Grashof numbers. The obtained results provide a rational framework for estimating systematic errors in mass metrology due to the effects of free convection.

The Colorado Ultraviolet Transit Experiment (CUTE): Observing Mass Loss on Short-Period Exoplanets

NASA Astrophysics Data System (ADS)

Egan, Arika; Fleming, Brian; France, Kevin

2018-06-01

The Colorado Ultraviolet Transit Experiment (CUTE) is an NUV spectrograph packaged into a 6U CubeSat, designed to characterize the interaction between exoplanetary atmospheres and their host stars. CUTE will conduct a transit spectroscopy survey, gathering data over multiple transits on more than 12 short-period exoplanets with a range of masses and radii. The instrument will characterize the spectral properties of the transit light curves to < 1% depth sensitivity. The NUV is host to several high oscillator strength atomic and molecular absorption features predicted to exist in the upper atmospheres of these planets, including Mg I, Mg II, Fe II, and OH. The shape and evolution of these spectral light curves will be used to quantify mass loss rates, the stellar drives of that mass loss, and the possible existence of exoplanetary magnetic fiends. This poster presents the science motivation for CUTE, planned observation and data analysis methods, and expected results.

Mass production of chemicals from biomass-derived oil by directly atmospheric distillation coupled with co-pyrolysis

NASA Astrophysics Data System (ADS)

Zhang, Xue-Song; Yang, Guang-Xi; Jiang, Hong; Liu, Wu-Jun; Ding, Hong-Sheng

2013-01-01

Production of renewable commodity chemicals from bio-oil derived from fast pyrolysis of biomass has received considerable interests, but hindered by the presence of innumerable components in bio-oil. In present work, we proposed and experimentally demonstrated an innovative approach combining atmospheric distillation of bio-oil with co-pyrolysis for mass production of renewable chemicals from biomass, in which no waste was produced. It was estimated that 51.86 wt.% of distillate just containing dozens of separable organic components could be recovered using this approach. Ten protogenetic and three epigenetic compounds in distillate were qualitatively identified by gas chromatography/mass spectrometry and quantified by gas chromatography. Among them, the recovery efficiencies of acetic acid, propanoic acid, and furfural were all higher than 80 wt.%. Formation pathways of the distillate components in this process were explored. This work opens up a fascinating prospect for mass production of chemical feedstock from waste biomass.

Identification and characterization of complex bioactive oligosaccharides in white and red wine by a combination of mass spectrometry and gas chromatography.

PubMed

Bordiga, Matteo; Travaglia, Fabiano; Meyrand, Mickael; German, J Bruce; Lebrilla, Carlito B; Coïsson, Jean Daniel; Arlorio, Marco; Barile, Daniela

2012-04-11

Over forty-five complex free oligosaccharides (of which several are novel) have been isolated and chemically characterized by gas chromatography and high resolution and high mass accuracy matrix-assisted laser desorption/ionization mass spectrometry (MALDI-FTICR MS) in red and white wines, Grignolino and Chardonnay, respectively. Oligosaccharides with a degree of polymerization between 3 and 14 were separated from simple monosaccharides and disaccharides by solid-phase extraction. The concentrations of free oligosaccharides were over 100 mg/L in both red and white wines. The free oligosaccharides-characterized for the first time in the present study-include hexose-oligosaccharides, xyloglucans, and arabinogalactans and may be the natural byproduct of the degradation of cell wall polysaccharides. The coupled gas chromatography and accurate mass spectrometry approach revealed an effective method to characterize and quantify complex functional oligosaccharides in both red and white wine.

Anthropic selection and the habitability of planets orbiting M and K dwarfs

NASA Astrophysics Data System (ADS)

Waltham, Dave

2011-10-01

The Earth may have untypical characteristics which were necessary preconditions for the emergence of life and, ultimately, intelligent observers. This paper presents a rigorous procedure for quantifying such "anthropic selection" effects by comparing Earth's properties to those of exoplanets. The hypothesis that there is anthropic selection for stellar mass (i.e. planets orbiting stars with masses within a particular range are more favourable for the emergence of observers) is then tested. The results rule out the expected strong selection for low mass stars which would result, all else being equal, if the typical timescale for the emergence of intelligent observers is very long. This indicates that the habitable zone of small stars may be less hospitable for intelligent life than the habitable zone of solar-mass stars. Additional planetary properties can also be analyzed, using the approach introduced here, once relatively complete and unbiased statistics are made available by current and planned exoplanet characterization projects.

Identification and Characterization of Complex Bioactive Oligosaccharides in White and Red Wine by a Combination of Mass Spectrometry and Gas Chromatography

PubMed Central

Bordiga, Matteo; Travaglia, Fabiano; Meyrand, Mickael; German, J. Bruce; Lebrilla, Carlito B.; Coïsson, Jean Daniel; Arlorio, Marco; Barile, Daniela

2012-01-01

Over forty-five complex free oligosaccharides (of which several are novel) have been isolated and chemically characterized by gas chromatography and high resolution and high mass accuracy matrix-assisted laser desorption/ionization mass spectrometry (MALDI-FTICR MS) in red and white wines, Grignolino and Chardonnay, respectively. Oligosaccharides with a degree of polymerization between 3 and 14 were separated from simple monosaccharides and disaccharides by solid-phase extraction. The concentrations free oligosaccharides were over 100 mg/L in both red and white wines. The free oligosaccharides—characterized for the first time in the present study include hexose-oligosaccharides, xyloglucans and arabinogalactans, and may be the natural by-products of the degradation of cell wall polysaccharides. The coupled gas chromatography and accurate mass spectrometry approach revealed an effective method to characterize and quantify complex functional oligosaccharides in both red and white wine. PMID:22429017

The Milky Way's Mass Inferered by Satellite Kinematics from the Illustris Simulation

NASA Astrophysics Data System (ADS)

Lazar, Alexander; Boylan-Kolchin, Michael

2017-06-01

A precise interpretion of the Milky Way’s dark matter halo mass has limited our ability to depict the Milky Way in cosmological context. One of the noteworthy issues is that only a handful of tracers — satellite galaxies — probe the gravitational potential at large radii, and converting observed velocities into a constraint on the mass profile requires significant assumptions. High resolution cosmological simulations provide a powerful tool for interpreting data, but most results to date rely on dark-matter-only simulations that neglect the effects of galaxy formation physics. We compare the orbital kinematics of satellite galaxies in the Illustris simulation with its dark-matter-only counterpart, which allows us to compare, on an object-by-object basis, the differences influenced in orbits from baryonic physics. We quantify the effects of galaxy formation physics on orbital distributions of satellites and describe how these differences affect inferences for the mass of the Milky Way.

Using PSEA-Quant for Protein Set Enrichment Analysis of Quantitative Mass Spectrometry-Based Proteomics

PubMed Central

Lavallée-Adam, Mathieu

2017-01-01

PSEA-Quant analyzes quantitative mass spectrometry-based proteomics datasets to identify enrichments of annotations contained in repositories such as the Gene Ontology and Molecular Signature databases. It allows users to identify the annotations that are significantly enriched for reproducibly quantified high abundance proteins. PSEA-Quant is available on the web and as a command-line tool. It is compatible with all label-free and isotopic labeling-based quantitative proteomics methods. This protocol describes how to use PSEA-Quant and interpret its output. The importance of each parameter as well as troubleshooting approaches are also discussed. PMID:27010334

Plasma volume methodology: Evans blue, hemoglobin-hematocrit, and mass density transformations

NASA Technical Reports Server (NTRS)

Greenleaf, J. E.; Hinghofer-Szalkay, H.

1985-01-01

Methods for measuring absolute levels and changes in plasma volume are presented along with derivations of pertinent equations. Reduction in variability of the Evans blue dye dilution technique using chromatographic column purification suggests that the day-to-day variability in the plasma volume in humans is less than + or - 20 m1. Mass density determination using the mechanical-oscillator technique provides a method for measuring vascular fluid shifts continuously for assessing the density of the filtrate, and for quantifying movements of protein across microvascular walls. Equations for the calculation of volume and density of shifted fluid are presented.

Body composition in athletes: assessment and estimated fatness.

PubMed

Malina, Robert M

2007-01-01

The study of body composition attempts to partition and quantify body weight or mass into its basic components. Body weight is a gross measure of the mass of the body, which can be studied at several levels from basic chemical elements and specific tissues to the entire body. Body composition is a factor that can influence athletic performance and as such is of considerable interest to athletes and coaches. This article provides an overview of models and methods used for studying body composition, changes in body composition during adolescence and the transition into adulthood, and applications to adolescent and young adult athletes.

Comb-push ultrasound shear elastography of breast masses: initial results show promise.

PubMed

Denis, Max; Mehrmohammadi, Mohammad; Song, Pengfei; Meixner, Duane D; Fazzio, Robert T; Pruthi, Sandhya; Whaley, Dana H; Chen, Shigao; Fatemi, Mostafa; Alizad, Azra

2015-01-01

To evaluate the performance of Comb-push Ultrasound Shear Elastography (CUSE) for classification of breast masses. CUSE is an ultrasound-based quantitative two-dimensional shear wave elasticity imaging technique, which utilizes multiple laterally distributed acoustic radiation force (ARF) beams to simultaneously excite the tissue and induce shear waves. Female patients who were categorized as having suspicious breast masses underwent CUSE evaluations prior to biopsy. An elasticity estimate within the breast mass was obtained from the CUSE shear wave speed map. Elasticity estimates of various types of benign and malignant masses were compared with biopsy results. Fifty-four female patients with suspicious breast masses from our ongoing study are presented. Our cohort included 31 malignant and 23 benign breast masses. Our results indicate that the mean shear wave speed was significantly higher in malignant masses (6 ± 1.58 m/s) in comparison to benign masses (3.65 ± 1.36 m/s). Therefore, the stiffness of the mass quantified by the Young's modulus is significantly higher in malignant masses. According to the receiver operating characteristic curve (ROC), the optimal cut-off value of 83 kPa yields 87.10% sensitivity, 82.61% specificity, and 0.88 for the area under the curve (AUC). CUSE has the potential for clinical utility as a quantitative diagnostic imaging tool adjunct to B-mode ultrasound for differentiation of malignant and benign breast masses.

Presence of Trifolium repens Promotes Complementarity of Water Use and N Facilitation in Diverse Grass Mixtures.

PubMed

Hernandez, Pauline; Picon-Cochard, Catherine

2016-01-01

Legume species promote productivity and increase the digestibility of herbage in grasslands. Considerable experimental data also indicate that communities with legumes produce more above-ground biomass than is expected from monocultures. While it has been attributed to N facilitation, evidence to identify the mechanisms involved is still lacking and the role of complementarity in soil water acquisition by vertical root differentiation remains unclear. We used a 20-months mesocosm experiment to investigate the effects of species richness (single species, two- and five-species mixtures) and functional diversity (presence of the legume Trifolium repens) on a set of traits related to light, N and water use and measured at community level. We found a positive effect of Trifolium presence and abundance on biomass production and complementarity effects in the two-species mixtures from the second year. In addition the community traits related to water and N acquisition and use (leaf area, N, water-use efficiency, and deep root growth) were higher in the presence of Trifolium. With a multiple regression approach, we showed that the traits related to water acquisition and use were with N the main determinants of biomass production and complementarity effects in diverse mixtures. At shallow soil layers, lower root mass of Trifolium and higher soil moisture should increase soil water availability for the associated grass species. Conversely at deep soil layer, higher root growth and lower soil moisture mirror soil resource use increase of mixtures. Altogether, these results highlight N facilitation but almost soil vertical differentiation and thus complementarity for water acquisition and use in mixtures with Trifolium. Contrary to grass-Trifolium mixtures, no significant over-yielding was measured for grass mixtures even those having complementary traits (short and shallow vs. tall and deep). Thus, vertical complementarity for soil resources uptake in mixtures was not only dependant on the inherent root system architecture but also on root plasticity. We also observed a time-dependence for positive complementarity effects due to the slow development of Trifolium in mixtures, possibly induced by competition with grasses. Overall, our data underlined that soil water resource was an important driver of over-yielding and complementarity effects in Trifolium-grass mixtures.

Real time in situ detection of organic nitrates in atmospheric aerosols

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rollins, Andrew W.; Smith, Jared D.; Wilson, Kevin R.

2010-06-11

A new field instrument is described that quantifies total particle phase organic nitrates. The instrument is based on the thermal dissociation laser induced fluorescence (TD-LIF) method that thermally converts nitrates to NO2 which is then detected by LIF. This instrument is unique in its ability to provide fast sensitive measurements of particle phase organic nitrates, without interference from inorganic nitrate. Here we use it to quantify organic nitrates in SOA generated from high-NOx photooxidation of limonene, a-pinene, D-3-carene, and tridecane. In these experiments the organic nitrate moiety is observed to be 6-15percent of the total SOA mass, depending on themore » organic precursor.« less

NecroQuant: quantitative assessment of radiological necrosis

NASA Astrophysics Data System (ADS)

Hwang, Darryl H.; Mohamed, Passant; Varghese, Bino A.; Cen, Steven Y.; Duddalwar, Vinay

2017-11-01

Clinicians can now objectively quantify tumor necrosis by Hounsfield units and enhancement characteristics from multiphase contrast enhanced CT imaging. NecroQuant has been designed to work as part of a radiomics pipelines. The software is a departure from the conventional qualitative assessment of tumor necrosis, as it provides the user (radiologists and researchers) a simple interface to precisely and interactively define and measure necrosis in contrast-enhanced CT images. Although, the software is tested here on renal masses, it can be re-configured to assess tumor necrosis across variety of tumors from different body sites, providing a generalized, open, portable, and extensible quantitative analysis platform that is widely applicable across cancer types to quantify tumor necrosis.

Quantifying the resolution level where the GRACE satellites can separate Greenland's glacial mass balance from surface mass balance

NASA Astrophysics Data System (ADS)

Bonin, J. A.; Chambers, D. P.

2015-09-01

Mass change over Greenland can be caused by either changes in the glacial dynamic mass balance (DMB) or the surface mass balance (SMB). The GRACE satellite gravity mission cannot directly separate the two physical causes because it measures the sum of the entire mass column with limited spatial resolution. We demonstrate one theoretical way to indirectly separate cumulative SMB from DMB with GRACE, using a least squares inversion technique with knowledge of the location of the glaciers. However, we find that the limited 60 × 60 spherical harmonic representation of current GRACE data does not provide sufficient resolution to adequately accomplish the task. We determine that at a maximum degree/order of 90 × 90 or above, a noise-free gravity measurement could theoretically separate the SMB from DMB signals. However, current GRACE satellite errors are too large at present to separate the signals. A noise reduction of a factor of 10 at a resolution of 90 × 90 would provide the accuracy needed for the interannual cumulative SMB and DMB to be accurately separated.

Quantifying the resolution level where the GRACE satellites can separate Greenland's glacial mass balance from surface mass balance

NASA Astrophysics Data System (ADS)

Bonin, J. A.; Chambers, D. P.

2015-02-01

Mass change over Greenland can be caused by either changes in the glacial mass balance (GMB) or the precipitation-based surface mass balance (SMB). The GRACE satellite gravity mission cannot directly separate the two physical causes because it measures the sum of the entire mass column with limited spatial resolution. We demonstrate one theoretical way to indirectly separate SMB from GMB with GRACE, using a least squares inversion technique with knowledge of the location of the glacier. However, we find that the limited 60 × 60 spherical harmonic representation of current GRACE data does not provide sufficient resolution to adequately accomplish the task. We determine that at a maximum degree/order of 90 × 90 or above, a noise-free gravity measurement could theoretically separate the SMB from GMB signals. However, current GRACE satellite errors are too large at present to separate the signals. A noise reduction of a factor of 9 at a resolution of 90 × 90 would provide the accuracy needed for the interannual SMB and GMB to be accurately separated.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Diaz-Cruz, J. L.

We discuss several aspects of the flavor problem in the Supersymmetry. First, in order to quantify the SUSY flavor problem, we generate randomly the entries of the sfermion mass matrices and determine which percentage of the points are consistent with current bounds on the flavor violating transitions, for which we take as an illustration the lepton flavor violating (LFV) decays li {yields} lj{gamma}. In the first instance we apply the mass-insertion method, and study how this percentage changes as one varies the parameters of the model. It is found that for 105 points about 10% of points pass current LFVmore » bounds on {mu} {yields} e{gamma} provided the sleptons masses are {approx} 10 TeV. While bounds on {tau} {yields} {mu}{gamma}, e{gamma} are satisfied for almost 100% of points even for sleptons masses as low as 360 GeV. Then, we consider an ansatz for sfermion masses that can be diagonalized exactly, and compare the results obtained previously for {tau} {yields} {mu}{gamma}. Now, we get that 100% of points satisfy the experimental bounds but with sleptons masses larger than 460 GeV.« less

Limited influence of climate change mitigation on short-term glacier mass loss

NASA Astrophysics Data System (ADS)

Marzeion, Ben; Kaser, Georg; Maussion, Fabien; Champollion, Nicolas

2018-04-01

Glacier mass loss is a key contributor to sea-level change1,2, slope instability in high-mountain regions3,4 and the changing seasonality and volume of river flow5-7. Understanding the causes, mechanisms and time scales of glacier change is therefore paramount to identifying successful strategies for mitigation and adaptation. Here, we use temperature and precipitation fields from the Coupled Model Intercomparison Project Phase 5 output to force a glacier evolution model, quantifying mass responses to future climatic change. We find that contemporary glacier mass is in disequilibrium with the current climate, and 36 ± 8% mass loss is already committed in response to past greenhouse gas emissions. Consequently, mitigating future emissions will have only very limited influence on glacier mass change in the twenty-first century. No significant differences between 1.5 and 2 K warming scenarios are detectable in the sea-level contribution of glaciers accumulated within the twenty-first century. In the long-term, however, mitigation will exert strong control, suggesting that ambitious measures are necessary for the long-term preservation of glaciers.

Quantification of microplastic mass and removal rates at wastewater treatment plants applying Focal Plane Array (FPA)-based Fourier Transform Infrared (FT-IR) imaging.

PubMed

Simon, Márta; van Alst, Nikki; Vollertsen, Jes

2018-05-17

This paper presents a method for microplastic (MP) mass quantification using a Focal Plane Array-based Fourier Transform Infrared imaging technique. It discusses the issue that particle number is not a conserved base quantity and hence less suited than mass to compare independent studies on MP in the environment. It concludes that MP mass should be included when quantifying MP pollution in the environment, supplementing the conventional approach of reporting particle numbers. Applying mass as the unit of MP measurement, the paper presents data showing that Danish wastewater treatment plants discharge around 3 t/year of MP in the size range 10-500 μm. This value corresponds to an annual per capita emission from these plants of 0.56 g MP/(capita year). The distribution of polymer types by mass and particle number differed because the size of MP particles of the different material types varied. Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

Modeling and experimental design for metabolic flux analysis of lysine-producing Corynebacteria by mass spectrometry.

PubMed

Wittmann, C; Heinzle, E

2001-04-01

Experimental design of (13)C-tracer studies for metabolic flux analysis with mass spectrometric determination of labeling patterns was performed for the central metabolism of Corynebacterium glutamicum comprising various flux scenarios. Ratio measurement of mass isotopomer pools of Corynebacterium products lysine, alanine, and trehalose is sufficient to quantify the flux partitioning ratios (i) between glycolysis and pentose phosphate pathways (Phi(PPP)), (ii) between the split pathways in the lysine biosynthesis (Phi(DH)), (iii) at the pyruvate node (Phi(PC)), and reversibilities of (iv) glucose 6-phosphate isomerase (zeta(PGI)), (v) at the pyruvate node (zeta(PC/PEPCK)), and (vi) of transaldolase and transketolases in the PPP. Weighted sensitivities for flux parameters were derived from partial derivatives to quantitatively evaluate experimental approaches and predict precision for estimated flux parameters. Deviation of intensity ratios from ideal values of 1 was used as weighting function. Weighted flux sensitivities can be used to identify optimal type and degree of tracer labeling or potential intensity ratios to be measured. Experimental design for lysine-producing strain C. glutamicum MH 20-22B (Marx et al., Biotechnol. Bioeng. 49, 111-129, 1996) and various potential mutants with different alterations in the flux pattern showed that specific tracer labelings are optimal to quantify a certain flux parameter uninfluenced by the overall flux situation. Identified substrates of choice are [1-(13)C]glucose for the estimation of Phi(PPP) and zeta(PGI) and a 1 : 1 mixture of [U-(12)C/U-(13)C]glucose for the determination of zeta(PC/PEPCK). Phi(PC) can be quantified by feeding [4-(13)C]glucose or [U-(12)C/U-(13)C]glucose (1 : 1), whereas Phi(DH) is accessible via [4-(13)C]glucose. The sensitivity for the quantification of a certain flux parameter can be influenced by superposition through other flux parameters in the network, but substrate and measured mass isotopomers of choice remain the same. In special cases, reduced labeling degree of the tracer substrate can increase the precision of flux analysis. Enhanced precision and flux information can be achieved via multiply labeled substrates. The presented approach can be applied for effective experimental design of (13)C tracer studies for metabolic flux analysis. Intensity ratios of other products such as glutamate, valine, phenylalanine, and riboflavin also sensitively reflect flux parameters, which underlines the great potential of mass spectrometry for flux analysis. Copyright 2001 Academic Press.

Parametric Power Spectral Density Analysis of Noise from Instrumentation in MALDI TOF Mass Spectrometry

PubMed Central

Shin, Hyunjin; Mutlu, Miray; Koomen, John M.; Markey, Mia K.

2007-01-01

Noise in mass spectrometry can interfere with identification of the biochemical substances in the sample. For example, the electric motors and circuits inside the mass spectrometer or in nearby equipment generate random noise that may distort the true shape of mass spectra. This paper presents a stochastic signal processing approach to analyzing noise from electrical noise sources (i.e., noise from instrumentation) in MALDI TOF mass spectrometry. Noise from instrumentation was hypothesized to be a mixture of thermal noise, 1/f noise, and electric or magnetic interference in the instrument. Parametric power spectral density estimation was conducted to derive the power distribution of noise from instrumentation with respect to frequencies. As expected, the experimental results show that noise from instrumentation contains 1/f noise and prominent periodic components in addition to thermal noise. These periodic components imply that the mass spectrometers used in this study may not be completely shielded from the internal or external electrical noise sources. However, according to a simulation study of human plasma mass spectra, noise from instrumentation does not seem to affect mass spectra significantly. In conclusion, analysis of noise from instrumentation using stochastic signal processing here provides an intuitive perspective on how to quantify noise in mass spectrometry through spectral modeling. PMID:19455245

Future carbon storage in harvested wood products from Ontario's Crown forests

Treesearch

Jiaxin Chen; Stephen J. Colombo; Michael T. Ter-Mikaelian; Linda S. Heath

2008-01-01

This analysis quantifies projected carbon (C) storage in harvested wood products (HWP) from Ontario's Crown forests. The large-scale forest C budget model, FORCARB-ON, was applied to estimate HWP C stock changes using the production approach defined by the Intergovernmental Panel on Climate Change. Harvested wood volume was converted to C mass and allocated to...

Urinary excretion of the ß-adrenergic feed additives ractopamine and zilpaterol in breast and lung cancer patients

USDA-ARS?s Scientific Manuscript database

Background: ß-agonists have been legally used in the U.S. for almost two decades to increase lean muscle mass in meat animals. Despite a cardiotoxic effect after high-dose exposure, there has been limited research on human ß-agonist exposures related to meat consumption. Objectives: We quantified u...

Chlorine Decay and DBP formation under Different Flow Regions in PVC and Ductile Iron Pipes: Preliminary Results on the Role of flow Velocity and Radial Mass Transfer - Paper

EPA Science Inventory

A systematic experimental study was conducted using a pilot-scale drinking water distribution system simulator to quantify the effect of hydrodynamics, total organic carbon (TOC), initial disinfectant levels, and pipe materials on chlorine decay and disinfection by-product (DBP) ...