Quantifying stream thermal regimes at management-pertinent scales: combining thermal infrared and stationary stream temperature data in a novel modeling framework.

USGS Publications Warehouse

Vatland, Shane J.; Gresswell, Robert E.; Poole, Geoffrey C.

2015-01-01

Accurately quantifying stream thermal regimes can be challenging because stream temperatures are often spatially and temporally heterogeneous. In this study, we present a novel modeling framework that combines stream temperature data sets that are continuous in either space or time. Specifically, we merged the fine spatial resolution of thermal infrared (TIR) imagery with hourly data from 10 stationary temperature loggers in a 100 km portion of the Big Hole River, MT, USA. This combination allowed us to estimate summer thermal conditions at a relatively fine spatial resolution (every 100 m of stream length) over a large extent of stream (100 km of stream) during during the warmest part of the summer. Rigorous evaluation, including internal validation, external validation with spatially continuous instream temperature measurements collected from a Langrangian frame of reference, and sensitivity analyses, suggests the model was capable of accurately estimating longitudinal patterns in summer stream temperatures for this system Results revealed considerable spatial and temporal heterogeneity in summer stream temperatures and highlighted the value of assessing thermal regimes at relatively fine spatial and temporal scales. Preserving spatial and temporal variability and structure in abiotic stream data provides a critical foundation for understanding the dynamic, multiscale habitat needs of mobile stream organisms. Similarly, enhanced understanding of spatial and temporal variation in dynamic water quality attributes, including temporal sequence and spatial arrangement, can guide strategic placement of monitoring equipment that will subsequently capture variation in environmental conditions directly pertinent to research and management objectives.

Quantifying stream nutrient uptake from ambient to saturation with instantaneous tracer additions

NASA Astrophysics Data System (ADS)

Covino, T. P.; McGlynn, B. L.; McNamara, R.

2009-12-01

Stream nutrient tracer additions and spiraling metrics are frequently used to quantify stream ecosystem behavior. However, standard approaches limit our understanding of aquatic biogeochemistry. Specifically, the relationship between in-stream nutrient concentration and stream nutrient spiraling has not been characterized. The standard constant rate (steady-state) approach to stream spiraling parameter estimation, either through elevating nutrient concentration or adding isotopically labeled tracers (e.g. 15N), provides little information regarding the stream kinetic curve that represents the uptake-concentration relationship analogous to the Michaelis-Menten curve. These standard approaches provide single or a few data points and often focus on estimating ambient uptake under the conditions at the time of the experiment. Here we outline and demonstrate a new method using instantaneous nutrient additions and dynamic analyses of breakthrough curve (BTC) data to characterize the full relationship between spiraling metrics and nutrient concentration. We compare the results from these dynamic analyses to BTC-integrated, and standard steady-state approaches. Our results indicate good agreement between these three approaches but we highlight the advantages of our dynamic method. Specifically, our new dynamic method provides a cost-effective and efficient approach to: 1) characterize full concentration-spiraling metric curves; 2) estimate ambient spiraling metrics; 3) estimate Michaelis-Menten parameters maximum uptake (Umax) and the half-saturation constant (Km) from developed uptake-concentration kinetic curves, and; 4) measure dynamic nutrient spiraling in larger rivers where steady-state approaches are impractical.

A numerical algorithm of tooth profile of non-circular cylindrical gear

NASA Astrophysics Data System (ADS)

Wang, Xuan

2017-08-01

Non-circular cylindrical gear (NCCG) is a common form of non-circular gear. Different from the circular gear, the tooth profile equation of NCCG cannot be obtained. So it is necessary to use a numerical algorithm to calculate the tooth profile of NCCG. For this reason, this paper presents a simple and highly efficient numerical algorithm to obtain the tooth profile of NCCG. Firstly, the mathematical model of tooth profile envelope of NCCG is established based on the principle of gear shaping, and the tooth profile envelope of NCCG is obtained. Secondly, the polar radius and polar angle of shaper cutter tooth profile are chosen as the criterions, by which the points of NCCG tooth cogging can be screened out. Finally, the boundary of tooth cogging points is extracted by a distance criterion and correspondingly the tooth profile of NCCG is obtained.

EFFECTS OF NON-CIRCULAR MOTIONS ON AZIMUTHAL COLOR GRADIENTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martinez-Garcia, Eric E.; Gonzalez-Lopezlira, Rosa A.; Gomez, Gilberto C., E-mail: emartinez@cida.v, E-mail: r.gonzalez@crya.unam.m, E-mail: g.gomez@crya.unam.m

2009-12-20

Assuming that density waves trigger star formation, and that young stars preserve the velocity components of the molecular gas where they are born, we analyze the effects that non-circular gas orbits have on color gradients across spiral arms. We try two approaches, one involving semianalytical solutions for spiral shocks, and another with magnetohydrodynamic (MHD) numerical simulation data. We find that, if non-circular motions are ignored, the comparison between observed color gradients and stellar population synthesis models would in principle yield pattern speed values that are systematically too high for regions inside corotation, with the difference between the real and themore » measured pattern speeds increasing with decreasing radius. On the other hand, image processing and pixel averaging result in systematically lower measured spiral pattern speed values, regardless of the kinematics of stellar orbits. The net effect is that roughly the correct pattern speeds are recovered, although the trend of higher measured OMEGA{sub p} at lower radii (as expected when non-circular motions exist but are neglected) should still be observed. We examine the MartInez-GarcIa et al. photometric data and confirm that this is indeed the case. The comparison of the size of the systematic pattern speed offset in the data with the predictions of the semianalytical and MHD models corroborates that spirals are more likely to end at outer Lindblad resonance, as these authors had already found.« less

Pattern detection in stream networks: Quantifying spatialvariability in fish distribution

USGS Publications Warehouse

Torgersen, Christian E.; Gresswell, Robert E.; Bateman, Douglas S.

2004-01-01

Biological and physical properties of rivers and streams are inherently difficult to sample and visualize at the resolution and extent necessary to detect fine-scale distributional patterns over large areas. Satellite imagery and broad-scale fish survey methods are effective for quantifying spatial variability in biological and physical variables over a range of scales in marine environments but are often too coarse in resolution to address conservation needs in inland fisheries management. We present methods for sampling and analyzing multiscale, spatially continuous patterns of stream fishes and physical habitat in small- to medium-size watersheds (500–1000 hectares). Geospatial tools, including geographic information system (GIS) software such as ArcInfo dynamic segmentation and ArcScene 3D analyst modules, were used to display complex biological and physical datasets. These tools also provided spatial referencing information (e.g. Cartesian and route-measure coordinates) necessary for conducting geostatistical analyses of spatial patterns (empirical semivariograms and wavelet analysis) in linear stream networks. Graphical depiction of fish distribution along a one-dimensional longitudinal profile and throughout the stream network (superimposed on a 10-metre digital elevation model) provided the spatial context necessary for describing and interpreting the relationship between landscape pattern and the distribution of coastal cutthroat trout (Oncorhynchus clarki clarki) in western Oregon, U.S.A. The distribution of coastal cutthroat trout was highly autocorrelated and exhibited a spherical semivariogram with a defined nugget, sill, and range. Wavelet analysis of the main-stem longitudinal profile revealed periodicity in trout distribution at three nested spatial scales corresponding ostensibly to landscape disturbances and the spacing of tributary junctions.

Checking for Circular Dependencies in Distributed Stream Programs

DTIC Science & Technology

2011-08-29

extensions to express new complexities more conve- nient. Teleport messaging ( TMG ) in the StreamIt language [30] is an example. 1.1 StreamIt Language...dynamicities to an FIR computation Thies et al. in [30] give a TMG model for distributed stream pro- grams. TMG is a mechanism that implements control...messages for stream graphs. The TMG mechanism is designed not to interfere with original dataflow graphs’ structures and scheduling, therefore a key

Quantifying the production of dissolved organic nitrogen in headwater streams using 15N tracer additions

Treesearch

Laura T. Johnson; Jennifer L. Tank; Robert O. Hall; Patrick J. Mullholland; Stephen K. Hamilton; H. Maurice Valett; Jackson R. Webster; Melody J. Bernot; William H. McDowell; Bruce J. Peterson; Suzanne M. Thomas

2013-01-01

Most nitrogen (N) assimilation in lake and marine ecosystems is often subsequently released via autochthonous dissolved organic nitrogen (DON) production, but autochthonous DON production has yet to be quantified in flowing waters. We measured in-stream DON production following 24 h 15N-nitrate (NO3-...

Natural circular dichroism in non-resonant x-ray emission

NASA Astrophysics Data System (ADS)

Vahtras, Olav; Ågren, Hans; Carravetta, Vincenzo

1997-03-01

The possibility of observing natural circular dichroism in non-resonant x-ray emission spectroscopy is investigated by means of simulations of the chiral molecules twisted ethylene, propylene oxide and trans-1, 2-dimethylcyclopropane, in a two-step model and at the SCF level, with or without relaxation of the core-hole states. We observe both a chemical and an element dependence of the phenomenon and also an effect of electron relaxation. However, the latter is much less crucial than for circular dichroism in x-ray absorption. The calculations indicate that, at least for the decay of the carbon core-hole states, the effect could be detectable with the present or soon to be available experimental equipment.

Two-Phase Flow in Microchannels with Non-Circular Cross Section

NASA Astrophysics Data System (ADS)

Eckett, Chris A.; Strumpf, Hal J.

2002-11-01

Two-phase flow in microchannels is of practical importance in several microgravity space technology applications. These include evaporative and condensing heat exchangers for thermal management systems and vapor cycle systems, phase separators, and bioreactors. The flow passages in these devices typically have a rectangular cross-section or some other non-circular cross-section; may include complex flow paths with branches, merges and bends; and may involve channel walls of different wettability. However, previous experimental and analytical investigations of two-phase flow in reduced gravity have focussed on straight, circular tubes. This study is an effort to determine two-phase flow behavior, both with and without heat transfer, in microchannel configurations other than straight, circular tubes. The goals are to investigate the geometrical effects on flow pattern, pressure drop and liquid holdup, as well as to determine the relative importance of capillary, surface tension, inertial, and gravitational forces in such geometries. An evaporative heat exchanger for microgravity thermal management systems has been selected as the target technology in this investigation. Although such a heat exchanger has never been developed at Honeywell, a preliminary sizing has been performed based on knowledge of such devices in normal gravity environments. Fin shapes considered include plain rectangular, offset rectangular, and wavy fin configurations. Each of these fin passages represents a microchannel of non-circular cross section. The pans at the inlet and outlet of the heat exchanger are flow branches and merges, with up to 90-deg bends. R-134a has been used as the refrigerant fluid, although ammonia may well be used in the eventual application.

Direct Position Determination of Multiple Non-Circular Sources with a Moving Coprime Array.

PubMed

Zhang, Yankui; Ba, Bin; Wang, Daming; Geng, Wei; Xu, Haiyun

2018-05-08

Direct position determination (DPD) is currently a hot topic in wireless localization research as it is more accurate than traditional two-step positioning. However, current DPD algorithms are all based on uniform arrays, which have an insufficient degree of freedom and limited estimation accuracy. To improve the DPD accuracy, this paper introduces a coprime array to the position model of multiple non-circular sources with a moving array. To maximize the advantages of this coprime array, we reconstruct the covariance matrix by vectorization, apply a spatial smoothing technique, and converge the subspace data from each measuring position to establish the cost function. Finally, we obtain the position coordinates of the multiple non-circular sources. The complexity of the proposed method is computed and compared with that of other methods, and the Cramer⁻Rao lower bound of DPD for multiple sources with a moving coprime array, is derived. Theoretical analysis and simulation results show that the proposed algorithm is not only applicable to circular sources, but can also improve the positioning accuracy of non-circular sources. Compared with existing two-step positioning algorithms and DPD algorithms based on uniform linear arrays, the proposed technique offers a significant improvement in positioning accuracy with a slight increase in complexity.

Stream temperature medelling and fibre optic distributed temperature sensing to quantify groundwater discharge in the Ngongotaha Stream, New Zealand

NASA Astrophysics Data System (ADS)

Moridnejad, Maryam; Cameron, Stewart; Shamseldin, Asaad; Ward, Nick Dudley; Verhagen, Floris

2015-04-01

To characterize stream/groundwater interaction, fibre optic distributed temperature sensing (FODTS) was deployed over a 1 km reach in the Ngongotaha Stream, Rotorua, New Zealand in January 2013. The cable was deployed at the streambed near the left and right banks as the groundwater fed springs discharge laterally at both banks. Temperature profiles measured by FODTS were used to identify the location of springs using a constant temperature method (20 min averaged temperature data) (Lowry et al., 2007; Matheswaran et al., 2014; Selker et al., 2006a) and a standard deviation of diurnal temperature method (Lowry et al., 2007; Matheswaran et al., 2014). Both methods identified 13 individual springs at the right and left banks in an approximately 115 m reach. The left and right bank temperature profiles showed that full mixing of the spring and stream water does not occur between most of the springs due to their close spacing. Groundwater discharge quantification based on FODTS data is typically made using a simple steady state thermal mixing model (Briggs et al., 2012a; Selker et al.,2006a; Westhoff et al., 2007). This formula is not applicable in streams like the Ngongotaha where springs are closely spaced and groundwater and surface water are not well mixed between springs. To address this issue, a new approach was developed in this study in which a one dimensional heat transport model was fitted to the FODTS measurements, where the main calibration parameters of interest were the unknown spring discharges. Datasets of measured temperatures at the left and right bank were transformed to a new single dataset using a weighted average where the weights reflect the degree of mixing downstream of a spring. Model calibration helped to find the optimum value of the weights in the springs section. For a spring on the left bank the weighted average was skewed towards the left bank data, and vice-versa for a right bank spring. Upstream of the spring section, a non

Monitoring stream temperatures—A guide for non-specialists

USGS Publications Warehouse

Heck, Michael P.; Schultz, Luke D.; Hockman-Wert, David; Dinger, Eric C.; Dunham, Jason B.

2018-04-19

Executive SummaryWater temperature influences most physical and biological processes in streams, and along with streamflows is a major driver of ecosystem processes. Collecting data to measure water temperature is therefore imperative, and relatively straightforward. Several protocols exist for collecting stream temperature data, but these are frequently directed towards specialists. This document was developed to address the need for a protocol intended for non-specialists (non-aquatic) staff. It provides specific step-by-step procedures on (1) how to launch data loggers, (2) check the factory calibration of data loggers prior to field use, (3) how to install data loggers in streams for year-round monitoring, (4) how to download and retrieve data loggers from the field, and (5) how to input project data into organizational databases.

Non-Markovianity quantifier of an arbitrary quantum process

NASA Astrophysics Data System (ADS)

Debarba, Tiago; Fanchini, Felipe F.

2017-12-01

Calculating the degree of non-Markovianity of a quantum process, for a high-dimensional system, is a difficult task given complex maximization problems. Focusing on the entanglement-based measure of non-Markovianity we propose a numerically feasible quantifier for finite-dimensional systems. We define the non-Markovianity measure in terms of a class of entanglement quantifiers named witnessed entanglement which allow us to write several entanglement based measures of non-Markovianity in a unique formalism. In this formalism, we show that the non-Markovianity, in a given time interval, can be witnessed by calculating the expectation value of an observable, making it attractive for experimental investigations. Following this property we introduce a quantifier base on the entanglement witness in an interval of time; we show that measure is a bonafide measure of non-Markovianity. In our example, we use the generalized robustness of entanglement, an entanglement measure that can be readily calculated by a semidefinite programming method, to study impurity atoms coupled to a Bose-Einstein condensate.

Quantifying stream channel sediment contributions for the Paradise Creek Watershed in northern Idaho

NASA Astrophysics Data System (ADS)

Rittenburg, R.; Squires, A.; Boll, J.; Brooks, E. S.

2012-12-01

Excess sediment from agricultural areas has been a major source of impairment for water bodies around the world, resulting in the implementation of mitigation measures across landscapes. Watershed scale reductions often target upland erosion as key non-point sources for sediment loading. Stream channel dynamics, however, also play a contributing role in sediment loading in the form of legacy sediments, channel erosion and deposition, and buffering during storm events. Little is known about in-stream contributions, a potentially important consideration for Total Maximum Daily Loads (TMDLs). The objective of this study is to identify where and when sediment is delivered to the stream and the spatial and temporal stream channel contributions to the overall watershed scale sediment load. The study area is the Paradise Creek Watershed in northern Idaho. We modeled sediment yield to the channel system using the Water Erosion Prediction Project (WEPP) model, and subsequent channel erosion and deposition using CONCEPTs. Field observations of cross-sections along the channel system over a 5-year period were collected to verify model simulations and to test the hypothesis that the watershed load was made up predominantly of legacy sediments. Our modeling study shows that stream channels contributed to 50% of the total annual sediment load for the basin, with a 19 year time lag between sediments entering the stream to leaving the watershed outlet. Observations from long-term data in the watershed will be presented to indicate if the main source of the sediment is from either rural and urban non-point sources or the channel system.

Convergence and non-convergence in ecological, phenotypic, and genetic divergence across replicate population pairs of lake and stream stickleback

PubMed Central

Kaeuffer, Renaud; Peichel, Catherine L.; Bolnick, Daniel I.; Hendry, Andrew P.

2015-01-01

Convergent (or parallel) evolution provides strong evidence for a deterministic role of natural selection: similar phenotypes evolve when independent populations colonize similar environments. In reality, however, independent populations in similar environments always show some differences: some non-convergent evolution is present. It is therefore important to explicitly quantify the convergent and non-convergent aspects of trait variation, and to investigate the ecological and genetic explanations for each. We performed such an analysis for threespine stickleback (Gasterosteus aculeatus) populations inhabiting lake and stream habitats in independent watersheds. Morphological traits differed in the degree to which lake-stream divergence was convergent across watersheds. Some aspects of this variation were correlated with ecological variables related to diet, presumably reflecting the strength and specifics of divergent selection. Furthermore, a genetic scan revealed some markers that diverged between lakes and streams in many of the watersheds and some that diverged in only a few watersheds. Moreover, some of the lake-stream divergence in genetic markers was associated within some of the lake-stream divergence in morphological traits. Our results suggest that convergent evolution, and deviations from it, are primarily the result of natural selection, which corresponds in only some respect to the dichotomous habitat classifications frequently used in such studies. PMID:22276537

Quantifying geomorphic change at ephemeral stream restoration sites using a coupled-model approach

USGS Publications Warehouse

Norman, Laura M.; Sankey, Joel B.; Dean, David; Caster, Joshua J.; DeLong, Stephen B.; Henderson-DeLong, Whitney; Pelletier, Jon D.

2017-01-01

Rock-detention structures are used as restoration treatments to engineer ephemeral stream channels of southeast Arizona, USA, to reduce streamflow velocity, limit erosion, retain sediment, and promote surface-water infiltration. Structures are intended to aggrade incised stream channels, yet little quantified evidence of efficacy is available. The goal of this 3-year study was to characterize the geomorphic impacts of rock-detention structures used as a restoration strategy and develop a methodology to predict the associated changes. We studied reaches of two ephemeral streams with different watershed management histories: one where thousands of loose-rock check dams were installed 30 years prior to our study, and one with structures constructed at the beginning of our study. The methods used included runoff, sediment transport, and geomorphic modelling and repeat terrestrial laser scanner (TLS) surveys to map landscape change. Where discharge data were not available, event-based runoff was estimated using KINEROS2, a one-dimensional kinematic-wave runoff and erosion model. Discharge measurements and estimates were used as input to a two-dimensional unsteady flow-and-sedimentation model (Nays2DH) that combined a gridded flow, transport, and bed and bank simulation with geomorphic change. Through comparison of consecutive DEMs, the potential to substitute uncalibrated models to analyze stream restoration is introduced. We demonstrate a new approach to assess hydraulics and associated patterns of aggradation and degradation resulting from the construction of check-dams and other transverse structures. Notably, we find that stream restoration using rock-detention structures is effective across vastly different timescales.

Pitot pressure measurements in flow fields behind circular-arc nozzles with exhaust jets at subsonic free-stream Mach numbers. [langley 16 foot transonic tunnel

NASA Technical Reports Server (NTRS)

Mason, M. L.; Putnam, L. E.

1979-01-01

The flow field behind a circular arc nozzle with exhaust jet was studied at subsonic free stream Mach numbers. A conical probe was used to measure the pitot pressure in the jet and free stream regions. Pressure data were recorded for two nozzle configurations at nozzle pressure ratios of 2.0, 2.9, and 5.0. At each set of test conditions, the probe was traversed from the jet center line into the free stream region at seven data acquisition stations. The survey began at the nozzle exit and extended downstream at intervals. The pitot pressure data may be applied to the evaluation of computational flow field models, as illustrated by a comparison of the flow field data with results of inviscid jet plume theory.

75 FR 20342 - Certain Circular Welded Non-Alloy Steel Pipe From Mexico: Final Results of Antidumping Duty...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-04-19

...-Alloy Steel Pipe From Mexico: Final Results of Antidumping Duty Administrative Review and Rescission of...- alloy steel pipe from Mexico. See Certain Circular Welded Non-Alloy Steel Pipe From Mexico; Preliminary... remaining three respondents. See Certain Circular Welded Non-Alloy Steel Pipe from Mexico: Notice of Partial...

Effectiveness of backpack electrofishing for removal of non-native fishes from a small warm-water stream

USGS Publications Warehouse

Ward, David L.; O'neill, Matthew W.; Ka'apu-Lyons, Cassie

2015-01-01

Electrofishing is commonly used when renovating small streams to remove nuisance fishes but the likelihood of complete eradication of unwanted species, particularly warm-water fishes, is unknown. In October of 2008, we electrofished Bonita Creek, a small stream with base flows (<0.56 m3/s) in southern Arizona, and then treated the stream with rotenone to kill all of the remaining fish and quantify the effectiveness of single and multiple-pass electro fishing. Six, 100-m transects were electro fished on three consecutive days followed by a single treatment with rotenone. Fish caught using electrofishing were identified, counted and removed from each transect daily and then compared to numbers of dead fish collected during the subsequent rotenone application. Electrofishing effectiveness was highly variable among transects. Single-pass electrofishing caught an average of 23% (95% CI=5 to 40%) of the fish present, and three-pass electrofishing on consecutive days caught on average 55% (95% CI=28 to 83%) of the fish in each transect. Native Arizona fishes were more susceptible to electrofishing (77 % captured) than non-native species (54% captured), though native fish were rare. Transects in Bonita Creek averaged 3.6±1.5 m wide and 0.25±0.20 m deep (max depth 1.2 m). Bonita Creek is a small first-order stream which exhibits ideal conditions for backpack electrofishing, yet we captured a relatively small percentage of the fish present. This suggests that complete removal of non-native warm-water fishes using backpack electrofishing is not likely to be successful, especially in larger more complex streams.

76 FR 31940 - Circular Welded Non-Alloy Steel Pipe From Taiwan: Notice of Rescission of Antidumping Duty...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-06-02

... Steel Pipe From Taiwan: Notice of Rescission of Antidumping Duty Administrative Review AGENCY: Import... review of the antidumping duty order on circular welded non-alloy steel pipe from Taiwan. The period of... review of the antidumping duty order on circular welded non-alloy steel pipe from Taiwan. See Antidumping...

Circular non-coding RNA ANRIL modulates ribosomal RNA maturation and atherosclerosis in humans

PubMed Central

Holdt, Lesca M.; Stahringer, Anika; Sass, Kristina; Pichler, Garwin; Kulak, Nils A.; Wilfert, Wolfgang; Kohlmaier, Alexander; Herbst, Andreas; Northoff, Bernd H.; Nicolaou, Alexandros; Gäbel, Gabor; Beutner, Frank; Scholz, Markus; Thiery, Joachim; Musunuru, Kiran; Krohn, Knut; Mann, Matthias; Teupser, Daniel

2016-01-01

Circular RNAs (circRNAs) are broadly expressed in eukaryotic cells, but their molecular mechanism in human disease remains obscure. Here we show that circular antisense non-coding RNA in the INK4 locus (circANRIL), which is transcribed at a locus of atherosclerotic cardiovascular disease on chromosome 9p21, confers atheroprotection by controlling ribosomal RNA (rRNA) maturation and modulating pathways of atherogenesis. CircANRIL binds to pescadillo homologue 1 (PES1), an essential 60S-preribosomal assembly factor, thereby impairing exonuclease-mediated pre-rRNA processing and ribosome biogenesis in vascular smooth muscle cells and macrophages. As a consequence, circANRIL induces nucleolar stress and p53 activation, resulting in the induction of apoptosis and inhibition of proliferation, which are key cell functions in atherosclerosis. Collectively, these findings identify circANRIL as a prototype of a circRNA regulating ribosome biogenesis and conferring atheroprotection, thereby showing that circularization of long non-coding RNAs may alter RNA function and protect from human disease. PMID:27539542

The effect of heat generation on mixed convection flow in nano fluids over a horizontal circular cylinder

NASA Astrophysics Data System (ADS)

Juliyanto, Bagus; Widodo, Basuki; Imron, Chairul

2018-04-01

The purpose of this research is to study the effect of heat generation on mixed convection flow on Nano fluids over a horizontal circular cylinder of a heated in two dimension form. A stream of fluids are steady and incompressible, a stream flowing vertically upwards for circular cylinder and the boundary layer at the stagnation point. Three different types of nanoparticles considered are Cu, Al2O3, and TiO2. Mixed convection flow in Nano fluids on the surface of a circular cylinder will cause the boundary layer. The governing boundary layer equations are transformed into a non-dimensional form, and then the non-dimensional forms are transformed into a similar boundary equations by using stream function. Furthermore, an implicit finite-difference scheme known as the Keller-box method is applied to solve numerically the resulting similar boundary layer equations. The result of the research by varying the non-dimensional parameters are mixed convection, Prandtl number, nanoparticle volume fraction, heat generation, and radius of a cylinder are as follows. First, the velocity profile increase and temperature profile decrease when mixed convection parameter increase. Second, the velocity and temperature profiles decrease when Prandtl number parameter increase. Third, the velocity profile with the variation of nanoparticle volume fraction (χ) is increased when the value of χ is 0,1 ≤ χ ≤ 0,15 and the velocity profile decreases when the value of χ is 0,19 ≤ χ ≤ 0,5 while the temperature profile is increasing when the value of χ is 0,1 ≤ χ ≤ 0,5. Fourth, the velocity and temperature profiles increase when heat generation and the radius of the cylinder increase. The last, Cu, Al 2 O 3, and TiO 2 nanoparticles produce the same velocity and temperature profiles, but the three types of nanoparticles are different at the velocity and temperature values.

Quantifying Nitrogen Transport from Riparian Groundwater Seeps to a Headwater Stream in an Agricultural Watershed

NASA Astrophysics Data System (ADS)

Redder, B.; Buda, A. R.; Kennedy, C. D.; Folmar, G.; DeWalle, D. R.; Boyer, E. W.

2017-12-01

Headwater streams in the Northeast region of the United States typically receive more than 50% of their base flow from groundwater, either by diffuse discharge through the streambed or by localized discharge through riparian seeps. It is very difficult to separate the individual contributions of these two groundwater fluxes to streamflow. Furthermore, riparian seeps show significant variability in discharge and nutrient concentration, adding uncertainty to estimates of groundwater-based nitrogen inputs to streams. In this study, we combined stream measurements at two different scales to quantify groundwater discharge by matrix flow through the streambed and by macropore flow through the riparian zone. The study site was a 175-m stream reach located in a heavily cultivated 45-hectare watershed in east-central Pennsylvania. Differential streamflow gauging and streambed measurements of hydraulic head gradient, hydraulic conductivity, and groundwater chemistry were used to solve for the riparian groundwater flux in a reach mass balance equation. Adopting a mass balance approach, riparian groundwater fluxes ranged from 115-205 m3 d-1, transporting 2-4 kg N d-1 of nitrate from the fractured bedrock aquifer to the stream. Air-water manometer readings from short-screened piezometers installed in the shallow streambed (30 cm) indicated slightly losing head gradients between the stream and groundwater, despite substantial (36-66%) increases in stream flow along the stream reach. Preliminary chemical data for the stream, streambed, and shallow ground water suggest that the stream is partially disconnected from the underlying aquifer and that riparian groundwater seeps supply essentially all water and nitrogen to the system. These results, along with the comparison of shallow and deep aquifer water with seep chemistry, provide insight into sources of water to riparian groundwater seeps and allow us to determine the transport and fate of nitrogen in a fractured aquifer system

Drag characteristics of circular cylinders in a laminar boundary layer at supersonic free-stream velocities

NASA Technical Reports Server (NTRS)

Stallings, R. L., Jr.; Lamb, M.; Howell, D. T.

1973-01-01

Drag measurements were obtained with circular cylinders attached to a flat-plate surface with their longitudinal axes perpendicular to the plate surface. When more than one cylinder was tested, they were alined in a spanwise row perpendicular to the free-stream velocity vector. The drag measurements were obtained through a range of Mach numbers from 2.3 to 4.6, cylinder heights ranging from approximately 0.4 to 3 times the undisturbed laminar boundary-layer thickness, and cylinder height-to-diameter ratios of 1.0 and approximately 2. Included in the paper is a complete presentation in figure form of the experimental results and a discussion of the more significant findings. An attempt is made to select the most appropriate parameters for correlating the experimental results and, where possible, these results are compared with theoretical calculations.

Quantifying watershed-scale groundwater loading and in-stream fate of nitrate using high-frequency water quality data

USGS Publications Warehouse

Miller, Matthew P.; Tesoriero, Anthony J.; Capel, Paul D.; Pellerin, Brian A.; Hyer, Kenneth E.; Burns, Douglas A.

2016-01-01

We describe a new approach that couples hydrograph separation with high-frequency nitrate data to quantify time-variable groundwater and runoff loading of nitrate to streams, and the net in-stream fate of nitrate at the watershed-scale. The approach was applied at three sites spanning gradients in watershed size and land use in the Chesapeake Bay watershed. Results indicate that 58-73% of the annual nitrate load to the streams was groundwater-discharged nitrate. Average annual first order nitrate loss rate constants (k) were similar to those reported in both modelling and in-stream process-based studies, and were greater at the small streams (0.06 and 0.22 d-1) than at the large river (0.05 d-1), but 11% of the annual loads were retained/lost in the small streams, compared with 23% in the large river. Larger streambed area to water volume ratios in small streams result in greater loss rates, but shorter residence times in small streams result in a smaller fraction of nitrate loads being removed than in larger streams. A seasonal evaluation of k values suggests that nitrate was retained/lost at varying rates during the growing season. Consistent with previous studies, streamflow and nitrate concentration were inversely related to k. This new approach for interpreting high-frequency nitrate data and the associated findings furthers our ability to understand, predict, and mitigate nitrate impacts on streams and receiving waters by providing insights into temporal nitrate dynamics that would be difficult to obtain using traditional field-based studies.

Quantifying tidal stream disruption in a simulated Milky Way

NASA Astrophysics Data System (ADS)

Sandford, Emily; Küpper, Andreas H. W.; Johnston, Kathryn V.; Diemand, Jürg

2017-09-01

Simulations of tidal streams show that close encounters with dark matter subhaloes induce density gaps and distortions in on-sky path along the streams. Accordingly, observing disrupted streams in the Galactic halo would substantiate the hypothesis that dark matter substructure exists there, while in contrast, observing collimated streams with smoothly varying density profiles would place strong upper limits on the number density and mass spectrum of subhaloes. Here, we examine several measures of stellar stream 'disruption' and their power to distinguish between halo potentials with and without substructure and with different global shapes. We create and evolve a population of 1280 streams on a range of orbits in the Via Lactea II simulation of a Milky Way-like halo, replete with a full mass range of Λcold dark matter subhaloes, and compare it to two control stream populations evolved in smooth spherical and smooth triaxial potentials, respectively. We find that the number of gaps observed in a stellar stream is a poor indicator of the halo potential, but that (I) the thinness of the stream on-sky, (II) the symmetry of the leading and trailing tails and (III) the deviation of the tails from a low-order polynomial path on-sky ('path regularity') distinguish between the three potentials more effectively. We furthermore find that globular cluster streams on low-eccentricity orbits far from the galactic centre (apocentric radius ˜30-80 kpc) are most powerful in distinguishing between the three potentials. If they exist, such streams will shortly be discoverable and mapped in high dimensions with near-future photometric and spectroscopic surveys.

Where does boreal stream DOC come from? - Quantifying the contribution from different landscape compartments using stable C isotope ratios.

NASA Astrophysics Data System (ADS)

Brink Bylund, J.; Bastviken, D.; Morth, C.; Laudon, H.; Giesler, R.; Buffam, I.

2007-12-01

Stable carbon isotope (δ13C) ratios are frequently used as a source tracer of e.g. organic matter (OM) produced in terrestrial versus aquatic environments. To our knowledge there has been no previous attempt to quantify the relative contribution of dissolved organic carbon (DOC) from various landscape compartments in catchments of different sizes. Here, we test to what extent δ13C values can be used also to quantify the relative contribution of DOC from wetlands/riparian zones along streams, and off stream forest habitats, respectively. We present data on spatial and temporal variability of DOC concentrations and δ13C-DOC values, during the year of 2005 in Krycklan catchment, a boreal stream network in northern Sweden. Ten stream sites, ranging from order 1 to 4, were monitored in sub catchments with different wetland coverage. Spatial variation of DOC concentration showed a weak but statistically significant relationship with wetland area, with higher concentration with increasing percent of wetland in the drainage area. During base flow the difference in δ13C-DOC values was significantly different between forest (-27.5‰) and wetland (-28.1‰). This spatial pattern disappears during spring peak flow when higher discharge flushing upper soil layer and the riparian zone on DOC in the catchments. A simple mixing model using DOC and δ13C-DOC showed that stream water DOC could be describe as a mixture of DOC coming from forest (deep) groundwater and wetland/riparian zone water. The result indicates that during spring peak flow almost all stream DOC (84-100%) is derived from wetlands and riparian zones. The wetland/riparian water dominates the stream DOC flux at all hydrological events, except for two sites, one forest dominated and one mixed catchment, where the forest groundwater dominated the DOC transport during base flow. Although the total wetland area in Krycklan catchment only represent 8.3%, it contributed, together with riparian zones, to as much as 83

A probabilistic approach to quantifying hydrologic thresholds regulating migration of adult Atlantic salmon into spawning streams

NASA Astrophysics Data System (ADS)

Lazzaro, G.; Soulsby, C.; Tetzlaff, D.; Botter, G.

2017-03-01

Atlantic salmon is an economically and ecologically important fish species, whose survival is dependent on successful spawning in headwater rivers. Streamflow dynamics often have a strong control on spawning because fish require sufficiently high discharges to move upriver and enter spawning streams. However, these streamflow effects are modulated by biological factors such as the number and the timing of returning fish in relation to the annual spawning window in the fall/winter. In this paper, we develop and apply a novel probabilistic approach to quantify these interactions using a parsimonious outflux-influx model linking the number of female salmon emigrating (i.e., outflux) and returning (i.e., influx) to a spawning stream in Scotland. The model explicitly accounts for the interannual variability of the hydrologic regime and the hydrological connectivity of spawning streams to main rivers. Model results are evaluated against a detailed long-term (40 years) hydroecological data set that includes annual fluxes of salmon, allowing us to explicitly assess the role of discharge variability. The satisfactory model results show quantitatively that hydrologic variability contributes to the observed dynamics of salmon returns, with a good correlation between the positive (negative) peaks in the immigration data set and the exceedance (nonexceedance) probability of a threshold flow (0.3 m3/s). Importantly, model performance deteriorates when the interannual variability of flow regime is disregarded. The analysis suggests that flow thresholds and hydrological connectivity for spawning return represent a quantifiable and predictable feature of salmon rivers, which may be helpful in decision making where flow regimes are altered by water abstractions.

A Statistical Model-Based Decision Support System for Managing Summer Stream Temperatures with Quantified Confidence Analysis

NASA Astrophysics Data System (ADS)

Neumann, D. W.; Zagona, E. A.; Rajagopalan, B.

2005-12-01

Warm summer stream temperatures due to low flows and high air temperatures are a critical water quality problem in many western U.S. river basins because they impact threatened fish species' habitat. Releases from storage reservoirs and river diversions are typically driven by human demands such as irrigation, municipal and industrial uses and hydropower production. Historically, fish needs have not been formally incorporated in the operating procedures, which do not supply adequate flows for fish in the warmest, driest periods. One way to address this problem is for local and federal organizations to purchase water rights to be used to increase flows, hence decrease temperatures. A statistical model-predictive technique for efficient and effective use of a limited supply of fish water has been developed and incorporated in a Decision Support System (DSS) that can be used in an operations mode to effectively use water acquired to mitigate warm stream temperatures. The DSS is a rule-based system that uses the empirical, statistical predictive model to predict maximum daily stream temperatures based on flows that meet the non-fish operating criteria, and to compute reservoir releases of allocated fish water when predicted temperatures exceed fish habitat temperature targets with a user specified confidence of the temperature predictions. The empirical model is developed using a step-wise linear regression procedure to select significant predictors, and includes the computation of a prediction confidence interval to quantify the uncertainty of the prediction. The DSS also includes a strategy for managing a limited amount of water throughout the season based on degree-days in which temperatures are allowed to exceed the preferred targets for a limited number of days that can be tolerated by the fish. The DSS is demonstrated by an example application to the Truckee River near Reno, Nevada using historical flows from 1988 through 1994. In this case, the statistical model

Quantifying the sensitivity of ephemeral streams to land disturbance activities in arid ecosystems at the watershed scale.

PubMed

O'Connor, Ben L; Hamada, Yuki; Bowen, Esther E; Grippo, Mark A; Hartmann, Heidi M; Patton, Terri L; Van Lonkhuyzen, Robert A; Carr, Adrianne E

2014-11-01

Large areas of public lands administered by the Bureau of Land Management and located in arid regions of the southwestern United States are being considered for the development of utility-scale solar energy facilities. Land-disturbing activities in these desert, alluvium-filled valleys have the potential to adversely affect the hydrologic and ecologic functions of ephemeral streams. Regulation and management of ephemeral streams typically falls under a spectrum of federal, state, and local programs, but scientifically based guidelines for protecting ephemeral streams with respect to land-development activities are largely nonexistent. This study developed an assessment approach for quantifying the sensitivity to land disturbance of ephemeral stream reaches located in proposed solar energy zones (SEZs). The ephemeral stream assessment approach used publicly-available geospatial data on hydrology, topography, surficial geology, and soil characteristics, as well as high-resolution aerial imagery. These datasets were used to inform a professional judgment-based score index of potential land disturbance impacts on selected critical functions of ephemeral streams, including flow and sediment conveyance, ecological habitat value, and groundwater recharge. The total sensitivity scores (sum of scores for the critical stream functions of flow and sediment conveyance, ecological habitats, and groundwater recharge) were used to identify highly sensitive stream reaches to inform decisions on developable areas in SEZs. Total sensitivity scores typically reflected the scores of the individual stream functions; some exceptions pertain to groundwater recharge and ecological habitats. The primary limitations of this assessment approach were the lack of high-resolution identification of ephemeral stream channels in the existing National Hydrography Dataset, and the lack of mechanistic processes describing potential impacts on ephemeral stream functions at the watershed scale. The

Quantifying the sensitivity of ephemeral streams to land disturbance activities in arid ecosystems at the watershed scale

DOE Office of Scientific and Technical Information (OSTI.GOV)

O’Connor, Ben L.; Hamada, Yuki; Bowen, Esther E.

2014-08-17

Large areas of public lands administered by the Bureau of Land Management and located in arid regions of the southwestern United States are being considered for the development of utility-scale solar energy facilities. Land-disturbing activities in these desert, alluvium-filled valleys have the potential to adversely affect the hydrologic and ecologic functions of ephemeral streams. Regulation and management of ephemeral streams typically falls under a spectrum of federal, state, and local programs, but scientifically based guidelines for protecting ephemeral streams with respect to land-development activities are largely nonexistent. This study developed an assessment approach for quantifying the sensitivity to land disturbancemore » of ephemeral stream reaches located in proposed solar energy zones (SEZs). The ephemeral stream assessment approach used publicly-available geospatial data on hydrology, topography, surficial geology, and soil characteristics, as well as highresolution aerial imagery. These datasets were used to inform a professional judgment-based score index of potential land disturbance impacts on selected critical functions of ephemeral streams, including flow and sediment conveyance, ecological habitat value, and groundwater recharge. The total sensitivity scores (sum of scores for the critical stream functions of flow and sediment conveyance, ecological habitats, and groundwater recharge) were used to identify highly sensitive stream reaches to inform decisions on developable areas in SEZs. Total sensitivity scores typically reflected the scores of the individual stream functions; some exceptions pertain to groundwater recharge and ecological habitats. The primary limitations of this assessment approach were the lack of high-resolution identification of ephemeral stream channels in the existing National Hydrography Dataset, and the lack of mechanistic processes describing potential impacts on ephemeral stream functions at the watershed scale

Identification of Circular RNAs from the Parental Genes Involved in Multiple Aspects of Cellular Metabolism in Barley

PubMed Central

Darbani, Behrooz; Noeparvar, Shahin; Borg, Søren

2016-01-01

RNA circularization made by head-to-tail back-splicing events is involved in the regulation of gene expression from transcriptional to post-translational levels. By exploiting RNA-Seq data and down-stream analysis, we shed light on the importance of circular RNAs in plants. The results introduce circular RNAs as novel interactors in the regulation of gene expression in plants and imply the comprehensiveness of this regulatory pathway by identifying circular RNAs for a diverse set of genes. These genes are involved in several aspects of cellular metabolism as hormonal signaling, intracellular protein sorting, carbohydrate metabolism and cell-wall biogenesis, respiration, amino acid biosynthesis, transcription and translation, and protein ubiquitination. Additionally, these parental loci of circular RNAs, from both nuclear and mitochondrial genomes, encode for different transcript classes including protein coding transcripts, microRNA, rRNA, and long non-coding/microprotein coding RNAs. The results shed light on the mitochondrial exonic circular RNAs and imply the importance of circular RNAs for regulation of mitochondrial genes. Importantly, we introduce circular RNAs in barley and elucidate their cellular-level alterations across tissues and in response to micronutrients iron and zinc. In further support of circular RNAs' functional roles in plants, we report several cases where fluctuations of circRNAs do not correlate with the levels of their parental-loci encoded linear transcripts. PMID:27375638

Justification of the Shape of a Non-Circular Cross-Section for Drilling With a Roller Cutter

NASA Astrophysics Data System (ADS)

Buyalich, Gennady; Husnutdinov, Mikhail

2017-11-01

The parameters of the shape of non-circular cross-section affect not only the process of blasting, but also the design of the tool and the process of drilling as well. In the conditions of open-pit mining, it is reasonable to use a roller cutter to produce a non-circular cross-section of blasting holes. With regard to the roller cutter, the impact of the cross-section shape on the oscillations of the axial force arising upon its rotation is determined. It is determined that a polygonal shape with rounded comers of the borehole walls connections and their convex shape, which ensures a smaller range of the total axial force and the torque deflecting the bit from the axis of its rotation is the rational form of the non-circular cross-section of the borehole in terms of bit design. It has been shown that the ratio of the number of cutters to the number of borehole corners must be taken into account when justifying the shape of the cross-section, both from the point of view of the effectiveness of the explosion action and from the point of view of the rational design of the bit.

Ion Streaming Instabilities in Pair Ion Plasma and Localized Structure with Non-Thermal Electrons

NASA Astrophysics Data System (ADS)

Nasir Khattak, M.; Mushtaq, A.; Qamar, A.

2015-12-01

Pair ion plasma with a fraction of non-thermal electrons is considered. We investigate the effects of the streaming motion of ions on linear and nonlinear properties of unmagnetized, collisionless plasma by using the fluid model. A dispersion relation is derived, and the growth rate of streaming instabilities with effect of streaming motion of ions and non-thermal electrons is calculated. A qausi-potential approach is adopted to study the characteristics of ion acoustic solitons. An energy integral equation involving Sagdeev potential is derived during this process. The presence of the streaming term in the energy integral equation affects the structure of the solitary waves significantly along with non-thermal electrons. Possible application of the work to the space and laboratory plasmas are highlighted.

Kurtosis-Based Blind Source Extraction of Complex Non-Circular Signals with Application in EEG Artifact Removal in Real-Time

PubMed Central

Javidi, Soroush; Mandic, Danilo P.; Took, Clive Cheong; Cichocki, Andrzej

2011-01-01

A new class of complex domain blind source extraction algorithms suitable for the extraction of both circular and non-circular complex signals is proposed. This is achieved through sequential extraction based on the degree of kurtosis and in the presence of non-circular measurement noise. The existence and uniqueness analysis of the solution is followed by a study of fast converging variants of the algorithm. The performance is first assessed through simulations on well understood benchmark signals, followed by a case study on real-time artifact removal from EEG signals, verified using both qualitative and quantitative metrics. The results illustrate the power of the proposed approach in real-time blind extraction of general complex-valued sources. PMID:22319461

On feathers, bifurcations and shells: the dynamics of tidal streams across the mass scale

NASA Astrophysics Data System (ADS)

Amorisco, N. C.

2015-06-01

I present an organic description of the spectrum of regimes of collisionless tidal streams and define the orderings between the relevant physical quantities that shape their morphology. Three fundamental dichotomies are identified and described in the form of dimensionless inequalities. These govern (i) the speed of the stream's growth, (ii) the internal coherence of the stream and (iii) its thickness or opening angle, within and outside the orbital plane. The mechanisms through which such main qualitative properties are regulated and the relevant limiting cases are analysed. For example, the slope of the host's density profile strongly influences the speed of the stream's growth, in both length and width, as steeper density profiles enhance differential streaming. Internal coherence is the natural requirement for the appearance of substructure and overdensities in tidal debris, and I concentrate on the characteristic `feathering' typical of streams of star clusters. Overdensities and substructures are associated with minima in the relative streaming velocity of the stream members. For streams with high circularity, these are caused by the epicyclic oscillations of stars; however, for highly non-circular progenitor's orbits, internal substructure is caused by the oscillating differences in energy and actions with which material is shed at different orbital phases of the progenitor. This modulation results in different streaming speeds along the tidal arm: the streakline of material shed between two successive apocentric passages is folded along its length, pulled at its centre by the faster differential streaming of particles released near pericentre, which are therefore more widely scattered. When the stream is coherent enough, the same mechanism is potentially capable of generating a bimodal profile in the density distributions of the longer wraps of more massive progenitors, which I dub `bifurcations'. The conditions that allow streams to be internally coherent

Using Snorkeling to Quantify Fish Assemblage Structure in Arkansas Streams

Treesearch

David G. Lonzarich; Mary E. Lonzarich; Melvin L. Warren

2004-01-01

Abstract - As a technique for surveying fish populations in low diversity, clear streams of the Pacific Northwest, snorkeling is a commonly used alternative to electrofishing. While the method is becoming more widely used in the high diversity streams of eastern North America, its efficacy as a tool for surveying fish assemblages in these streams is...

Free vibrations of a multilayered non-circular cylindrical shell

NASA Astrophysics Data System (ADS)

Zelinskaya, Anna V.

2018-05-01

Free vibrations of an elastic non-circular cylindrical shell of intermediate length are considered. The shell is assumed heterogeneous in the thickness direction, in its part it may be multilayered. In order to derive the equations of stability, we use the Timoshenko-Reissner model. According to it, a shell that is heterogeneous can be replaced by a homogeneous shell with the equivalent bending and transversal shear stiffness. We obtain the approximate asymptotic formula for a frequency that takes into account an influence of a transversal shear and a variability of a directrix curvature. As an example, a three-layer elliptical shell with hinged edges and a soft middle layer is analyzed.

Nitrate transport and supply limitations quantified using high-frequency stream monitoring and turning point analysis

NASA Astrophysics Data System (ADS)

Jones, Christopher S.; Wang, Bo; Schilling, Keith E.; Chan, Kung-sik

2017-06-01

Agricultural landscapes often leak inorganic nitrogen to the stream network, usually in the form of nitrate-nitrite (NOx-N), degrading downstream water quality on both the local and regional scales. While the spatial distribution of nitrate sources has been delineated in many watersheds, less is known about the complicated temporal dynamics that drive stream NOx-N because traditional methods of stream grab sampling are often conducted at a low frequency. Deployment of accurate real-time, continuous measurement devices that have been developed in recent years enables high-frequency sampling that provides detailed information on the concentration-discharge relation and the timing of NOx-N delivery to streams. We aggregated 15-min interval NOx-N and discharge data over a nine-year period into daily averages and then used robust statistical methods to identify how the discharge regime within an artificially-drained agricultural watershed reflected catchment hydrology and NOx-N delivery pathways. We then quantified how transport and supply limitations varied from year-to-year and how dependence of these limitations varied with climate, especially drought. Our results show NOx-N concentrations increased linearly with discharge up to an average "turning point" of 1.42 mm of area-normalized discharge, after which concentrations decline with increasing discharge. We estimate transport and supply limitations to govern 57 and 43 percent, respectively, of the NOx-N flux over the nine-year period. Drought effects on the NOx-N flux linger for multiple years and this is reflected in a greater tendency toward supply limitations in the three years following drought. How the turning point varies with climate may aid in prediction of NOx-N loading in future climate regimes.

Experiments in dilution jet mixing effects of multiple rows and non-circular orifices

NASA Technical Reports Server (NTRS)

Holdeman, J. D.; Srinivasan, R.; Coleman, E. B.; Meyers, G. D.; White, C. D.

1985-01-01

Experimental and empirical model results are presented that extend previous studies of the mixing of single-sided and opposed rows of jets in a confined duct flow to include effects of non-circular orifices and double rows of jets. Analysis of the mean temperature data obtained in this investigation showed that the effects of orifice shape and double rows are significant only in the region close to the injection plane, provided that the orifices are symmetric with respect to the main flow direction. The penetration and mixing of jets from 45-degree slanted slots is slightly less than that from equivalent-area symmetric orifices. The penetration from 2-dimensional slots is similar to that from equivalent-area closely-spaced rows of holes, but the mixing is slower for the 2-D slots. Calculated mean temperature profiles downstream of jets from non-circular and double rows of orifices, made using an extension developed for a previous empirical model, are shown to be in good agreement with the measured distributions.

Experiments in dilution jet mixing - Effects of multiple rows and non-circular orifices

NASA Technical Reports Server (NTRS)

Holdeman, J. D.; Srinivasan, R.; Coleman, E. B.; Meyers, G. D.; White, C. D.

1985-01-01

Experimental and empirical model results are presented that extend previous studies of the mixing of single-sided and opposed rows of jets in a confined duct flow to include effects of non-circular orifices and double rows of jets. Analysis of the mean temperature data obtained in this investigation showed that the effects of orifice shape and double rows are significant only in the region close to the injection plane, provided that the orifices are symmetric with respect to the main flow direction. The penetration and mixing of jets from 45-degree slanted slots is slightly less than that from equivalent-area symmetric orifices. The penetration from two-dimensional slots is similar to that from equivalent-area closely-spaced rows of holes, but the mixing is slower for the 2-D slots. Calculated mean temperature profiles downstream of jets from non-circular and double rows of orifices, made using an extension developed for a previous empirical model, are shown to be in good agreement with the measured distributions.

WE-G-BRF-07: Non-Circular Scanning Trajectories with Varian Developer Mode

DOE Office of Scientific and Technical Information (OSTI.GOV)

Davis, A; Pearson, E; Pan, X

2014-06-15

Purpose: Cone-beam CT (CBCT) in image-guide radiation therapy (IGRT) typicallyacquires scan data via the circular trajectory of the linearaccelerator's (linac) gantry rotation. Though this lends itself toanalytic reconstruction algorithms like FDK, iterative reconstructionalgorithms allow for a broader range of scanning trajectories. Weimplemented a non-circular scanning trajectory with Varian's TrueBeamDeveloper Mode and performed some preliminary reconstructions toverify the geometry. Methods: We used TrueBeam Developer Mode to program a new scanning trajectorythat increases the field of view (FOV) along the gantry rotation axiswithout moving the patient. This trajectory consisted of moving thegantry in a circle, then translating the source and detector alongmore » theaxial direction before acquiring another circular scan 19 cm away fromthe first. The linear portion of the trajectory includes an additional4.5 cm above and below the axial planes of the source's circularrotation. We scanned a calibration phantom consisting of a lucite tubewith a spiral pattern of CT spots and used the maximum-likelihoodalgorithm to iteratively reconstruct the CBCT volume. Results: With the TrueBeam trajectory definition, we acquired projection dataof the calibration phantom using the previously described trajectory.We obtained a scan of the treatment couch for log normalization byscanning with the same trajectory but without the phantom present.Using the nominal geometric parameters reported in the projectionheaders with our iterative reconstruction algorithm, we obtained acorrect reconstruction of the calibration phantom. Conclusion: The ability to implement new scanning trajectories with the TrueBeamDeveloper Mode enables us access to a new parameter space for imagingwith CBCT for IGRT. Previous simulations and simple dual circle scanshave shown iterative reconstruction with non-circular trajectories canincrease the axial FOV with CBCT. Use of Developer Mode

Quantifying spatial scaling patterns and their local and regional correlates in headwater streams: Implications for resilience

USGS Publications Warehouse

Gothe, Emma; Sandin, Leonard; Allen, Craig R.; Angeler, David G.

2014-01-01

The distribution of functional traits within and across spatiotemporal scales has been used to quantify and infer the relative resilience across ecosystems. We use explicit spatial modeling to evaluate within- and cross-scale redundancy in headwater streams, an ecosystem type with a hierarchical and dendritic network structure. We assessed the cross-scale distribution of functional feeding groups of benthic invertebrates in Swedish headwater streams during two seasons. We evaluated functional metrics, i.e., Shannon diversity, richness, and evenness, and the degree of redundancy within and across modeled spatial scales for individual feeding groups. We also estimated the correlates of environmental versus spatial factors of both functional composition and the taxonomic composition of functional groups for each spatial scale identified. Measures of functional diversity and within-scale redundancy of functions were similar during both seasons, but both within- and cross-scale redundancy were low. This apparent low redundancy was partly attributable to a few dominant taxa explaining the spatial models. However, rare taxa with stochastic spatial distributions might provide additional information and should therefore be considered explicitly for complementing future resilience assessments. Otherwise, resilience may be underestimated. Finally, both environmental and spatial factors correlated with the scale-specific functional and taxonomic composition. This finding suggests that resilience in stream networks emerges as a function of not only local conditions but also regional factors such as habitat connectivity and invertebrate dispersal.

SURVEY OF THE NATION'S NON-WADEABLE STREAMS AND RIVERS

EPA Science Inventory

The U.S. EPA is engaging states, tribes and other parties in designing a national survey to assess the condition of non-wadeable rivers and streams. The river survey is one of a series of surveys beng implemented as a partnership among states, tribes and U.S. EPA, with the colla...

The GOES-R Rebroadcast (GRB) Data Stream Simulator

NASA Astrophysics Data System (ADS)

Dittberner, G. J.; Gibbons, K.; Czopkiewicz, E.; Miller, C.; Brown-Bergtold, B.; Haman, B.; Marley, S.

2013-12-01

GOES Rebroadcast (GRB) signals in the GOES-R era will replace the current legacy GOES Variable (GVAR) signal and will have substantially different characteristics, including a change in data rate from a single 2.1 Mbps stream to two digital streams of 15.5 Mbps each. Five GRB Simulators were developed as portable systems that output a high-fidelity stream of Consultative Committee for Space Data Systems (CCSDS) formatted GRB packet data equivalent to live GRB data. The data are used for on-site testing of user ingest and data handling systems known as field terminal sites. The GRB Simulator is a fully self-contained system which includes all software and hardware units needed for operation. The operator manages configurations to edit preferences, define individual test scenarios, and manage event logs and reports. Simulations are controlled by test scenarios, which are scripts that specify the test data and provide a series of actions for the GRB Simulator to perform when generating GRB output. Scenarios allow for the insertion of errors or modification of GRB packet headers for testing purposes. The GRB Simulator provides a built-in editor for managing scenarios. The GRB Simulator provides GRB data as either baseband (digital) or Intermediate Frequency (IF) output to the test system. GRB packet data are sent in the same two output streams used in the operational system: one for Left Hand Circular Polarization (LHCP) and one for Right Hand Circular Polarization (RHCP). Use of circular polarization in the operational system allows the transmitting antenna to multiplex the two digital streams into the same signal, thereby doubling the available bandwidth. The GRB Simulator is designed to be used at sites that receive the GRB downlink.

Statistical isotropy violation in WMAP CMB maps resulting from non-circular beams

NASA Astrophysics Data System (ADS)

Das, Santanu; Mitra, Sanjit; Rotti, Aditya; Pant, Nidhi; Souradeep, Tarun

2016-06-01

Statistical isotropy (SI) of cosmic microwave background (CMB) fluctuations is a key observational test to validate the cosmological principle underlying the standard model of cosmology. While a detection of SI violation would have immense cosmological ramification, it is important to recognise their possible origin in systematic effects of observations. The WMAP seven year (WMAP-7) release claimed significant deviation from SI in the bipolar spherical harmonic (BipoSH) coefficients and . Here we present the first explicit reproduction of the measurements reported in WMAP-7, confirming that beam systematics alone can completely account for the measured SI violation. The possibility of such a systematic origin was alluded to in WMAP-7 paper itself and other authors but not as explicitly so as to account for it accurately. We simulate CMB maps using the actual WMAP non-circular beams and scanning strategy. Our estimated BipoSH spectra from these maps match the WMAP-7 results very well. It is also evident that only a very careful and adequately detailed modelling, as carried out here, can conclusively establish that the entire signal arises from non-circular beam effect. This is important since cosmic SI violation signals are expected to be subtle and dismissing a large SI violation signal as observational artefact based on simplistic plausibility arguments run the serious risk of "throwing the baby out with the bathwater".

Quantifying hyporheic exchange in a karst stream using 222Rn

NASA Astrophysics Data System (ADS)

Khadka, M. B.; Martin, J. B.; Kurz, M. J.

2013-12-01

The hyporheic zone is a critical interface between groundwater and river water environments and is characterized by steep biogeochemical gradients. Understanding how this interface affects solute transport, nutrient cycling and contaminant attenuation is essential for better water resource management of streams. However, this understanding is constrained due to difficulty associated with quantification of exchange of water through the hyporheic zone. We tested a radon (222Rn) method to estimate the hyporheic water residence time and exchange rate in the bottom sediment of the spring-fed Ichetucknee River, north-central Florida. The river, which flows over the top of the unconfined karstic Floridan Aquifer, is characterized by a broad bedrock channel partially in-filled with unconsolidated sediments. Radon (222Rn) activity in the pore waters of the channel sediments differs from the amount expected from sediment production and decay. Although most radon in streams originates from sources in bottom sediments, the Ichetucknee River water has 222Rn activities (251×5 PCi/L) that are nearly twice that of the pore water (128×15 PCi/L). The river water 222Rn activity is consistent with that of the source springs, suggesting the source of Rn in the river is from deep within the aquifer rather than bottom sediments and that the excess 222Rn in the pore water results from hyporheic exchange. Profiles of radon concentrations with depth through the sediments show that the mixing of stream water and pore water extends 35-45 cm below the sediment and water interface. Based on a model that integrates the excess radon with depth, we estimate the water exchange rate to be between 1.1 and 1.6 cm/day with an average value of 1.3×0.2 cm/day. Water that exchanges across the sediment-water interface pumps oxygen into the sediments, thereby enhancing organic carbon remineralization, as well as the production of NH4+ and PO43- and their fluxes from sediments to the stream. As opposed to

Electron temperature gradient mode instability and stationary vortices with elliptic and circular boundary conditions in non-Maxwellian plasmas

NASA Astrophysics Data System (ADS)

Haque, Q.; Zakir, U.; Qamar, A.

2015-12-01

Linear and nonlinear dynamics of electron temperature gradient mode along with parallel electron dynamics is investigated by considering hydrodynamic electrons and non-Maxwellian ions. It is noticed that the growth rate of ηe-mode driven linear instability decreases by increasing the value of spectral index and increases by reducing the ion/electron temperature ratio along the magnetic field lines. The eigen mode dispersion relation is also found in the ballooning mode limit. Stationary solutions in the form of dipolar vortices are obtained for both circular and elliptic boundary conditions. It is shown that the dynamics of both circular and elliptic vortices changes with the inclusion of inhomogeneity and non-Maxwellian effects.

Coho salmon dependence on intermittent streams.

Treesearch

P.J. Wigington; J.L. Ebersole; M.E. Colvin; S.G. Leibowitz; B. Miller; B. Hansen; H. Lavigne; D. White; J.P. Baker; M.R. Church; J.R. Brooks; M.A. Cairns; J.E. Compton

2006-01-01

In this paper, we quantify the contributions of intermittent streams to coho salmon production in an Oregon coastal watershed. We provide estimates of (1) proportion of spawning that occurred in intermittent streams, (2) movement of juveniles into intermittent streams, (3) juvenile survival in intermittent and perennial streams during winter, and (4) relative size of...

Response of non-added solutes during nutrient addition experiments in streams

NASA Astrophysics Data System (ADS)

Rodriguez-Cardona, B.; Wymore, A.; Koenig, L.; Coble, A. A.; McDowell, W. H.

2015-12-01

Nutrient addition experiments, such as Tracer Additions for Spiraling Curve Characterization (TASCC), have become widely popular as a means to study nutrient uptake dynamics in stream ecosystems. However, the impact of these additions on ambient concentrations of non-added solutes is often overlooked. TASCC addition experiments are ideal for assessing interactions among solutes because it allows for the characterization of multiple solute concentrations across a broad range of added nutrient concentrations. TASCC additions also require the addition of a conservative tracer (NaCl) to track changes in conductivity during the experimental manipulation. Despite its use as a conservative tracer, chloride (Cl) and its associated sodium (Na) might change the concentrations of other ions and non-added nutrients through ion exchange or other processes. Similarly, additions of biologically active solutes might change the concentrations of other non-added solutes. These methodological issues in nutrient addition experiments have been poorly addressed in the literature. Here we examine the response of non-added solutes to pulse additions (i.e. TASCC) of NaCl plus nitrate (NO3-), ammonium, and phosphate across biomes including temperate and tropical forests, and arctic taiga. Preliminary results demonstrate that non-added solutes respond to changes in the concentration of these added nutrients. For example, concentrations of dissolved organic nitrogen (DON) in suburban headwater streams of New Hampshire both increase and decrease in response to NO3- additions, apparently due to biotic processes. Similarly, cations such as potassium, magnesium, and calcium also increase during TASCC experiments, likely due to cation exchange processes associated with Na addition. The response of non-added solutes to short-term pulses of added nutrients and tracers needs to be carefully assessed to ensure that nutrient uptake metrics are accurate, and to detect biotic interactions that may

Describing spatial pattern in stream networks: A practical approach

USGS Publications Warehouse

Ganio, L.M.; Torgersen, C.E.; Gresswell, R.E.

2005-01-01

The shape and configuration of branched networks influence ecological patterns and processes. Recent investigations of network influences in riverine ecology stress the need to quantify spatial structure not only in a two-dimensional plane, but also in networks. An initial step in understanding data from stream networks is discerning non-random patterns along the network. On the other hand, data collected in the network may be spatially autocorrelated and thus not suitable for traditional statistical analyses. Here we provide a method that uses commercially available software to construct an empirical variogram to describe spatial pattern in the relative abundance of coastal cutthroat trout in headwater stream networks. We describe the mathematical and practical considerations involved in calculating a variogram using a non-Euclidean distance metric to incorporate the network pathway structure in the analysis of spatial variability, and use a non-parametric technique to ascertain if the pattern in the empirical variogram is non-random.

Quantifying restoration success and recovery in a metal-polluted stream: A 17-year assessment of physicochemical and biological responses

USGS Publications Warehouse

Clements, W.H.; Vieira, N.K.M.; Church, S.E.

2010-01-01

Evaluating the effectiveness of stream restoration is often challenging because of the lack of pre-treatment data, narrow focus on physicochemical measures and insufficient post-restoration monitoring. Even when these fundamental elements are present, quantifying restoration success is difficult because of the challenges associated with distinguishing treatment effects from seasonal variation, episodic events and long-term climatic changes.2. We report results of one of the most comprehensive and continuous records of physical, chemical and biological data available to assess restoration success for a stream ecosystem in North America. Over a 17 year period we measured seasonal and annual changes in metal concentrations, physicochemical characteristics, macroinvertebrate communities, and brown trout Salmo trutta populations in the Arkansas River, a metal-contaminated stream in Colorado, USA.3. Although we observed significant improvements in water quality after treatment, the effectiveness of restoration varied temporally, spatially and among biological response variables. The fastest recovery was observed at stations where restoration eliminated point sources of metal contamination. Recovery of macroinvertebrates was significantly delayed at some stations because of residual sediment contamination and because extreme seasonal and episodic variation in metal concentrations prevented recolonization by sensitive species. Synthesis and applications. Because recovery trajectories after the removal of a stressor are often complex or nonlinear, long-term studies are necessary to assess restoration success within the context of episodic events and changes in regional climate. The observed variation in recovery among chemical and biological endpoints highlights the importance of developing objective criteria to assess restoration success. Although the rapid response of macroinvertebrates to reduced metal concentrations is encouraging, we have previously demonstrated that

Circular chemiresistors for microchemical sensors

DOEpatents

Ho, Clifford K [Albuquerque, NM

2007-03-13

A circular chemiresistor for use in microchemical sensors. A pair of electrodes is fabricated on an electrically insulating substrate. The pattern of electrodes is arranged in a circle-filling geometry, such as a concentric, dual-track spiral design, or a circular interdigitated design. A drop of a chemically sensitive polymer (i.e., chemiresistive ink) is deposited on the insulating substrate on the electrodes, which spreads out into a thin, circular disk contacting the pair of electrodes. This circularly-shaped electrode geometry maximizes the contact area between the pair of electrodes and the polymer deposit, which provides a lower and more stable baseline resistance than with linear-trace designs. The circularly-shaped electrode pattern also serves to minimize batch-to-batch variations in the baseline resistance due to non-uniform distributions of conductive particles in the chemiresistive polymer film.

The tail of two models: Impact of circularity and biomass non-homogeneity on UV disinfection of wastewater flocs.

PubMed

Azimi, Y; Liu, Y; Tan, T C; Allen, D G; Farnood, R R

2017-12-01

The effects of floc structural characteristics, i.e. shape and dense biomass distribution, were evaluated on ultraviolet (UV) disinfection resistance, represented by the tailing level of the UV dose response curve (DRC). Ellipsoid-shaped flocs of similar volume and different projected circularities were constructed in-silico and a mathematical model was developed to compare their UV DRC tailing levels (indicative of UV-resistance). It was found that floc shape can significantly influence tailing level, and rounder flocs (i.e. flocs with higher circularity) were more UV-resistant. This result was confirmed experimentally by obtaining UV DRCs of two 75-90 μm floc populations with different percentages (20% vs. 30%) of flocs with circularities higher than 0.5. The population enriched in less circular flocs (i.e. 20% flocs with circularities >0.5) had a lower tailing level (at least by 1-log) compared to the other population. The second model was developed to describe variations in UV disinfection kinetics observed in flocs with transverse vs. radial biomass non-homogeneity, indicative of biofilm-originated vs. suspended flocs. The varied-density hemispheres model and shell-core model were developed to simulate transverse and radial non-homogeneity, respectively. The UV DRCs were mathematically constructed and biofilm-originated flocs showed higher UV resistance compared to suspended flocs. The calculated UV DRCs agreed well with the experimental data collected from activated sludge and trickling filter flocs (no fitting parameters were used). These findings provide useful information in terms of designing/modifying upstream processes for reducing UV disinfection energy demand. Copyright © 2017 Elsevier Ltd. All rights reserved.

Transcriptome-wide discovery of circular RNAs in Archaea

PubMed Central

Danan, Miri; Schwartz, Schraga; Edelheit, Sarit; Sorek, Rotem

2012-01-01

Circular RNA forms had been described in all domains of life. Such RNAs were shown to have diverse biological functions, including roles in the life cycle of viral and viroid genomes, and in maturation of permuted tRNA genes. Despite their potentially important biological roles, discovery of circular RNAs has so far been mostly serendipitous. We have developed circRNA-seq, a combined experimental/computational approach that enriches for circular RNAs and allows profiling their prevalence in a whole-genome, unbiased manner. Application of this approach to the archaeon Sulfolobus solfataricus P2 revealed multiple circular transcripts, a subset of which was further validated independently. The identified circular RNAs included expected forms, such as excised tRNA introns and rRNA processing intermediates, but were also enriched with non-coding RNAs, including C/D box RNAs and RNase P, as well as circular RNAs of unknown function. Many of the identified circles were conserved in Sulfolobus acidocaldarius, further supporting their functional significance. Our results suggest that circular RNAs, and particularly circular non-coding RNAs, are more prevalent in archaea than previously recognized, and might have yet unidentified biological roles. Our study establishes a specific and sensitive approach for identification of circular RNAs using RNA-seq, and can readily be applied to other organisms. PMID:22140119

ASSESSMENT OF RADIOACTIVE AND NON-RADIOACTIVE CONTAMINANTS FOUND IN LOW LEVEL RADIOACTIVE WASTE STREAMS

DOE Office of Scientific and Technical Information (OSTI.GOV)

R.H. Little, P.R. Maul, J.S.S. Penfoldag

2003-02-27

This paper describes and presents the findings from two studies undertaken for the European Commission to assess the long-term impact upon the environment and human health of non-radioactive contaminants found in various low level radioactive waste streams. The initial study investigated the application of safety assessment approaches developed for radioactive contaminants to the assessment of nonradioactive contaminants in low level radioactive waste. It demonstrated how disposal limits could be derived for a range of non-radioactive contaminants and generic disposal facilities. The follow-up study used the same approach but undertook more detailed, disposal system specific calculations, assessing the impacts of bothmore » the non-radioactive and radioactive contaminants. The calculations undertaken indicated that it is prudent to consider non-radioactive, as well as radioactive contaminants, when assessing the impacts of low level radioactive waste disposal. For some waste streams with relatively low concentrations of radionuclides, the potential post-closure disposal impacts from non-radioactive contaminants can be comparable with the potential radiological impacts. For such waste streams there is therefore an added incentive to explore options for recycling the materials involved wherever possible.« less

75 FR 44814 - Audits of States, Local Governments, and Non-Profit Organizations; Circular A-133 Compliance...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-07-29

... OFFICE OF MANAGEMENT AND BUDGET Audits of States, Local Governments, and Non-Profit Organizations... Budget. ACTION: Notice of availability of the 2010 Circular A-133 Compliance Supplement. SUMMARY: This... Management, Office of Management and Budget, 725 17th Street, NW., Room 6025, New Executive Office Building...

Estimating discharge and non-point source nitrate loading to streams from three end-member pathways using high-frequency water quality and streamflow data

NASA Astrophysics Data System (ADS)

Miller, M. P.; Tesoriero, A. J.; Hood, K.; Terziotti, S.; Wolock, D.

2017-12-01

The myriad hydrologic and biogeochemical processes taking place in watersheds occurring across space and time are integrated and reflected in the quantity and quality of water in streams and rivers. Collection of high-frequency water quality data with sensors in surface waters provides new opportunities to disentangle these processes and quantify sources and transport of water and solutes in the coupled groundwater-surface water system. A new approach for separating the streamflow hydrograph into three components was developed and coupled with high-frequency specific conductance and nitrate data to estimate time-variable watershed-scale nitrate loading from three end-member pathways - dilute quickflow, concentrated quickflow, and slowflow groundwater - to two streams in central Wisconsin. Time-variable nitrate loads from the three pathways were estimated for periods of up to two years in a groundwater-dominated and a quickflow-dominated stream, using only streamflow and in-stream water quality data. The dilute and concentrated quickflow end-members were distinguished using high-frequency specific conductance data. Results indicate that dilute quickflow contributed less than 5% of the nitrate load at both sites, whereas 89±5% of the nitrate load at the groundwater-dominated stream was from slowflow groundwater, and 84±13% of the nitrate load at the quickflow-dominated stream was from concentrated quickflow. Concentrated quickflow nitrate concentrations varied seasonally at both sites, with peak concentrations in the winter that were 2-3 times greater than minimum concentrations during the growing season. Application of this approach provides an opportunity to assess stream vulnerability to non-point source nitrate loading and expected stream responses to current or changing conditions and practices in watersheds.

An assessment methodology for determining historical changes in mountain streams

Treesearch

Mark G. Smelser; John C. Schmidt

1998-01-01

Successful management of water in mountain streams by the USDA Forest Service requires that the link between resource development and channel change be documented and quantified. The characteristics of that linkage are unclear in mountain streams, and the adjustability of these streams to land-use and hydrologic change has been argued in court. One way to quantify the...

Ion-dust streaming instability with non-Maxwellian ions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kählert, Hanno, E-mail: kaehlert@theo-physik.uni-kiel.de

2015-07-15

The influence of non-Maxwellian ions on the ion-dust streaming instability in a complex plasma is investigated. The ion susceptibility employed for the calculations self-consistently accounts for the acceleration of the ions by a homogeneous background electric field and their collisions with neutral gas particles via a Bhatnagar-Gross-Krook collision term [e.g., A. V. Ivlev et al., Phys. Rev. E 71, 016405 (2005)], leading to significant deviations from a shifted Maxwellian distribution. The dispersion relation and the properties of the most unstable mode are studied in detail and compared with the Maxwellian case. The largest deviations occur at low to intermediate ion-neutralmore » damping. In particular, the growth rate of the instability for ion streaming below the Bohm speed is found to be lower than in the case of Maxwellian ions, yet remains on a significant level even for fast ion flows above the Bohm speed.« less

A geostatistical approach for describing spatial pattern in stream networks

USGS Publications Warehouse

Ganio, L.M.; Torgersen, C.E.; Gresswell, R.E.

2005-01-01

The shape and configuration of branched networks influence ecological patterns and processes. Recent investigations of network influences in riverine ecology stress the need to quantify spatial structure not only in a two-dimensional plane, but also in networks. An initial step in understanding data from stream networks is discerning non-random patterns along the network. On the other hand, data collected in the network may be spatially autocorrelated and thus not suitable for traditional statistical analyses. Here we provide a method that uses commercially available software to construct an empirical variogram to describe spatial pattern in the relative abundance of coastal cutthroat trout in headwater stream networks. We describe the mathematical and practical considerations involved in calculating a variogram using a non-Euclidean distance metric to incorporate the network pathway structure in the analysis of spatial variability, and use a non-parametric technique to ascertain if the pattern in the empirical variogram is non-random.

Quantifying spatial differences in metabolism in headwater streams

Treesearch

Ricardo González-Pinzón; Roy Haggerty; Alba Argerich

2014-01-01

Stream functioning includes simultaneous interaction among solute transport, nutrient processing, and metabolism. Metabolism is measured with methods that have limited spatial representativeness and are highly uncertain. These problems restrict development of methods for up-scaling biological processes that mediate nutrient processing. We used the resazurin–resorufin (...

Evolution of circular and linear polarization in scattering environments

DOE PAGES

van der Laan, John D.; Wright, Jeremy Benjamin; Scrymgeour, David A.; ...

2015-12-02

This study quantifies the polarization persistence and memory of circularly polarized light in forward-scattering and isotropic (Rayleigh regime) environments; and for the first time, details the evolution of both circularly and linearly polarized states through scattering environments. Circularly polarized light persists through a larger number of scattering events longer than linearly polarized light for all forward-scattering environments; but not for scattering in the Rayleigh regime. Circular polarization’s increased persistence occurs for both forward and backscattered light. The simulated environments model polystyrene microspheres in water with particle diameters of 0.1 μm, 2.0 μm, and 3.0 μm. The evolution of the polarizationmore » states as they scatter throughout the various environments are illustrated on the Poincaré sphere after one, two, and ten scattering events.« less

A gas-tracer injection for evaluating the fate of methane in a coastal plain stream: Degassing versus in-stream oxidation

USGS Publications Warehouse

Heilweil, Victor M.; Solomon, D. Kip; Darrah, Thomas H.; Gilmore, Troy E.; Genereux, David P.

2016-01-01

Methane emissions from streams and rivers have recently been recognized as an important component of global greenhouse budgets. Stream methane is lost as evasion to the atmosphere or in-stream methane oxidation. Previous studies have quantified evasion and oxidation with point-scale measurements. In this study, dissolved gases (methane, krypton) were injected into a coastal plain stream in North Carolina to quantify stream CH4 losses at the watershed scale. Stream-reach modeling yielded gas transfer and oxidation rate constants of 3.2 ± 0.5 and 0.5 ± 1.5 d–1, respectively, indicating a ratio of about 6:1. The resulting evasion and oxidation rates of 2.9 mmol m–2 d–1 and 1,140 nmol L–1 d–1, respectively, lie within ranges of published values. Similarly, the gas transfer velocity (K600) of 2.1 m d–1 is consistent with other gas tracer studies. This study illustrates the utility of dissolved-gas tracers for evaluating stream methane fluxes. In contrast to point measurements, this approach provides a larger watershed-scale perspective. Further work is needed to quantify the magnitude of these fluxes under varying conditions (e.g., stream temperature, nutrient load, gradient, flow rate) at regional and global scales before reliable bottom-up estimates of methane evasion can be determined at global scales.

Computational simulations of hydrogen circular migration in protonated acetylene induced by circularly polarized light

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shi, Xuetao; Li, Wen; Schlegel, H. Bernhard, E-mail: hbs@chem.wayne.edu

2016-08-28

The hydrogens in protonated acetylene are very mobile and can easily migrate around the C{sub 2} core by moving between classical and non-classical structures of the cation. The lowest energy structure is the T-shaped, non-classical cation with a hydrogen bridging the two carbons. Conversion to the classical H{sub 2}CCH{sup +} ion requires only 4 kcal/mol. The effect of circularly polarized light on the migration of hydrogens in oriented C{sub 2}H{sub 3}{sup +} has been simulated by Born-Oppenheimer molecular dynamics. Classical trajectory calculations were carried out with the M062X/6-311+G(3df,2pd) level of theory using linearly and circularly polarized 32 cycle 7 μmmore » cosine squared pulses with peak intensity of 5.6 × 10{sup 13} W/cm{sup 2} and 3.15 × 10{sup 13} W/cm{sup 2}, respectively. These linearly and circularly polarized pulses transfer similar amounts of energy and total angular momentum to C{sub 2}H{sub 3}{sup +}. The average angular momentum vectors of the three hydrogens show opposite directions of rotation for right and left circularly polarized light, but no directional preference for linearly polarized light. This difference results in an appreciable amount of angular displacement of the three hydrogens relative to the C{sub 2} core for circularly polarized light, but only an insignificant amount for linearly polarized light. Over the course of the simulation with circularly polarized light, this corresponds to a propeller-like motion of the three hydrogens around the C{sub 2} core of protonated acetylene.« less

Political and Economic Geomorphology: The Effect of Market Forces on Stream Restoration Designs

NASA Astrophysics Data System (ADS)

Singh, J.; Doyle, M. W.; Lave, R.; Robertson, M.

2013-12-01

Stream restoration in the U.S. is increasingly driven by compensatory mitigation; impacts to streams associated with typical land development activities must be offset via restoration of streams elsewhere. This policy application creates conditions in which restored stream ';credits' are traded under market-like conditions, comparable to wetland mitigation, carbon offsets, or endangered species habitat banking. The effect of this relatively new mechanism to finance stream restoration on design and construction is unknown. This research explores whether the introduction of a credit-based mitigation apparatus results in streams designed to maximize credit yields (i.e., ';credit-chasing') rather than focusing on restoring natural systems or functions. In other words, are market-based restored streams different from those designed for non-market purposes? We quantified geomorphic characteristics (e.g. hydraulic geometry, sinuosity, profile, bed sediment, LWD) of three types of streams: (1) a random sample of non-restored reaches, (2) streams restored for compensatory mitigation, and (3) streams restored under alternative funding sources (e.g., government grant programs, non-profit activities). We also compared the location of the types of stream reaches to determine whether there is a spatiality of restored streams. Physical data were complemented with a series of semi-structured interviews with key personnel in the stream restoration industry to solicit information on the influence of policy interpretation and market-driven factors on the design process. Preliminary analysis suggests that restoration is driving a directional shift in stream morphology in North Carolina. As a simple example, in the Piedmont, non-restored and restored channels had mean sinuosity of 1.17 and 1.23, respectively (p < 0.10). In the mountain region, non-restored and restored channels had mean sinuosity of 1.07 and 1.21, respectively (p < 0.01). In addition, restored streams were

Circular polarization of gravitational waves from non-rotating supernova cores: a new probe into the pre-explosion hydrodynamics

NASA Astrophysics Data System (ADS)

Hayama, Kazuhiro; Kuroda, Takami; Kotake, Kei; Takiwaki, Tomoya

2018-04-01

We present an analysis of the circular polarization of gravitational-waves (GWs) using results from three-dimensional (3D), general relativistic (GR) core-collapse simulations of a non-rotating 15M⊙ star. For the signal detection, we perform a coherent network analysis taking into account the four interferometers of LIGO Hanford, LIGO Livingston, VIRGO, and KAGRA. We focus on the Stokes V parameter, which directly characterizes the asymmetry of the GW circular polarization. We find that the amplitude of the GW polarization becomes bigger for our 3D-GR model that exhibits strong activity of the standing accretion shock instability (SASI). Our results suggest that the SASI-induced accretion flows to the proto-neutron star (PNS) lead to a characteristic, low-frequency modulation (100 ˜ 200 Hz) in both the waveform and the GW circular polarization. By estimating the signal-to-noise ratio of the GW polarization, we demonstrate that the detection horizon of the circular polarization extends by more than a factor of several times farther comparing to that of the GW amplitude. Our results suggest that the GW circular polarization, if detected, could provide a new probe into the pre-explosion hydrodynamics such as the SASI activity and the g-mode oscillation of the PNS.

Circular polarization of gravitational waves from non-rotating supernova cores: a new probe into the pre-explosion hydrodynamics

NASA Astrophysics Data System (ADS)

Hayama, Kazuhiro; Kuroda, Takami; Kotake, Kei; Takiwaki, Tomoya

2018-06-01

We present an analysis of the circular polarization of gravitational waves (GWs) using results from three-dimensional (3D), general relativistic (GR) core-collapse simulations of a non-rotating 15 M⊙ star. For the signal detection, we perform a coherent network analysis taking into account the four interferometers of LIGO Hanford, LIGO Livingston, VIRGO, and KAGRA. We focus on the Stokes V parameter, which directly characterizes the asymmetry of the GW circular polarization. We find that the amplitude of the GW polarization becomes bigger for our 3D-GR model that exhibits strong activity of the standing accretion shock instability (SASI). Our results suggest that the SASI-induced accretion flows to the proto-neutron star (PNS) lead to a characteristic, low-frequency modulation (100-200 Hz) in both the waveform and the GW circular polarization. By estimating the signal-to-noise ratio of the GW polarization, we demonstrate that the detection horizon of the circular polarization extends by more than a factor of several times farther comparing to that of the GW amplitude. Our results suggest that the GW circular polarization, if detected, could provide a new probe into the pre-explosion hydrodynamics such as the SASI activity and the g-mode oscillation of the PNS.

Failure of Non-Circular Composite Cylinders

NASA Technical Reports Server (NTRS)

Hyer, M. W.

2004-01-01

In this study, a progressive failure analysis is used to investigate leakage in internally pressurized non-circular composite cylinders. This type of approach accounts for the localized loss of stiffness when material failure occurs at some location in a structure by degrading the local material elastic properties by a certain factor. The manner in which this degradation of material properties takes place depends on the failure modes, which are determined by the application of a failure criterion. The finite-element code STAGS, which has the capability to perform progressive failure analysis using different degradation schemes and failure criteria, is utilized to analyze laboratory scale, graphite-epoxy, elliptical cylinders with quasi-isotropic, circumferentially-stiff, and axially-stiff material orthotropies. The results are divided into two parts. The first part shows that leakage, which is assumed to develop if there is material failure in every layer at some axial and circumferential location within the cylinder, does not occur without failure of fibers. Moreover before fibers begin to fail, only matrix tensile failures, or matrix cracking, takes place, and at least one layer in all three cylinders studied remain uncracked, preventing the formation of a leakage path. That determination is corroborated by the use of different degradation schemes and various failure criteria. Among the degradation schemes investigated are the degradation of different engineering properties, the use of various degradation factors, the recursive or non-recursive degradation of the engineering properties, and the degradation of material properties using different computational approaches. The failure criteria used in the analysis include the noninteractive maximum stress criterion and the interactive Hashin and Tsai-Wu criteria. The second part of the results shows that leakage occurs due to a combination of matrix tensile and compressive, fiber tensile and compressive, and inplane

Shifts in the trophic base of intermittent stream food webs

USGS Publications Warehouse

Dekar, Matthew P.; Magoulick, Daniel D.; Huxel, G.R.

2009-01-01

Understanding spatial and temporal variation in the trophic base of stream food webs is critical for predicting population and community stability, and ecosystem function. We used stable isotope ratios (13C/12C, and 15N/14N) to characterize the trophic base of two streams in the Ozark Mountains of northwest Arkansas, U.S.A. We predicted that autochthonous resources would be more important during the spring and summer and allochthonous resources would be more important in the winter due to increased detritus inputs from the riparian zone during autumn leaf drop. We predicted that stream communities would demonstrate increased reliance on autochthonous resources at sites with larger watersheds and greater canopy openness. The study was conducted at three low-order sites in the Mulberry River Drainage (watershed area range: 81-232 km2) seasonally in 2006 and 2007. We used circular statistics to examine community-wide shifts in isotope space among fish and invertebrate consumers in relation to basal resources, including detritus and periphyton. Mixing models were used to quantify the relative contribution of autochthonous and allochthonous energy sources to individual invertebrate consumers. Significant isotopic shifts occurred but results varied by season and site indicating substantial variation in the trophic base of stream food webs. In terms of temporal variation, consumers shifted toward periphyton in the summer during periods of low discharge, but results varied during the interval between summer and winter. Our results did not demonstrate increased reliance on periphyton with increasing watershed area or canopy openness, and detritus was important at all the sites. In our study, riffle-pool geomorphology likely disrupted the expected spatial pattern and stream drying likely impacted the availability and distribution of basal resources.

FRD and scrambling properties of recent non-circular fibres

NASA Astrophysics Data System (ADS)

Avila, Gerardo

2012-09-01

Optical fibres with octagonal, square and rectangular core shapes have been proposed as alternative to the circular fibres to link the telescopes to spectrographs in order to increase the accuracy of radial velocity measurements. Theoretically they offer better scrambling properties than their circular counterparts. First commercial octagonal fibres provided good near field scrambling gains. Unfortunately the far field scrambling did not show important figures. This article shows test results on new fibres from CeramOptec. The measurements show substantial improvements of the far field scrambling gains. In addition, evaluation of their focal ratio degradation (FRD) shows much better performances than previous fibres.

Quantifying non-recurring delay on New York City's arterial highways.

DOT National Transportation Integrated Search

2008-12-01

This research project was undertaken for NYSDOT to provide a better understanding of the impacts of traffic incidents/accident s on traffic delays on New York Citys Arterial Highways, and to better quantify and predict non-recurring traffic delay ...

78 FR 41424 - Audits of States, Local Governments, and Non-Profit Organizations; OMB Circular A-133 Compliance...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-07-10

... OFFICE OF MANAGEMENT AND BUDGET Audits of States, Local Governments, and Non-Profit Organizations... Management and Budget. ACTION: Notice of availability of the 2013 OMB Circular A-133 Compliance Supplement... may be mailed to Gilbert Tran, Office of Federal Financial Management, Office of Management and Budget...

77 FR 45695 - Audits of States, Local Governments, and Non-Profit Organizations; OMB Circular A-133 Compliance...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-01

... OFFICE OF MANAGEMENT AND BUDGET Audits of States, Local Governments, and Non-Profit Organizations... Management and Budget. ACTION: Notice of availability of the 2012 OMB Circular A-133 Compliance Supplement..., Office of Federal Financial Management, Office of Management and Budget, 725 17th Street NW., Room 6025...

76 FR 32377 - Audits of States, Local Governments, and Non-Profit Organizations; OMB Circular A-133 Compliance...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-06-06

... OFFICE OF MANAGEMENT AND BUDGET Audits of States, Local Governments, and Non-Profit Organizations... Management and Budget. ACTION: Notice of availability of the 2011 OMB Circular A-133 Compliance Supplement... Federal Financial Management, Office of Management and Budget, 725 17th Street, NW., Room 6025, New...

Coupling analysis of non-circular-symmetric modes and design of orientation-insensitive few-mode fiber couplers

NASA Astrophysics Data System (ADS)

Li, Jiaxiong; Du, Jiangbing; Ma, Lin; Li, Ming-Jun; Jiang, Shoulin; Xu, Xiao; He, Zuyuan

2017-01-01

We study the coupling between two identical weakly-coupled few-mode fibers based on coupled-mode theory. The coupling behavior of non-circular-symmetric modes, such as LP11 and LP21, is investigated analytically and numerically. By carefully choosing the fiber core separation and coupler length, we can design orientation-insensitive fiber couplers for non-circular-symmetric modes at arbitrary coupling ratios. Based on the design method, we propose an orientation-insensitive two-mode fiber coupler at 850 nm working as a mode multiplexer/demultiplexer for two-mode transmission using standard single-mode fiber. Within the band from 845 to 855 nm, the insertion losses of LP01 and LP11 modes are less than 0.03 dB and 0.24 dB, respectively. When the two-mode fiber coupler is used as mode demultiplexer, the LP01/LP11 and LP11/LP01 extinction ratios in the separated branches are respectively above 12.6 dB and 21.2 dB. Our design method can be extended to two-mode communication or sensing systems at other wavelengths.

Thermo-aerodynamic efficiency of non-circular ducts with vortex enhancement of heat exchange in different types of compact heat exchangers

NASA Astrophysics Data System (ADS)

Vasilev, V. Ya; Nikiforova, S. A.

2018-03-01

Experimental studies of thermo-aerodynamic characteristics of non-circular ducts with discrete turbulators on walls and interrupted channels have confirmed the rational enhancement of convective heat transfer, in which the growth of heat transfer outstrips or equals the growth of aerodynamic losses. Determining the regularities of rational (energy-saving) enhancement of heat transfer and the proposed method for comparing the characteristics of smooth-channel (without enhancement) heat exchangers with effective analogs provide new results, confirming the high efficiency of vortex enhancement of convective heat transfer in non-circular ducts of plate-finned heat exchange surfaces. This allows creating heat exchangers with much smaller mass and volume for operation in energy-saving modes.

The interactive effects of climate change, riparian management, and a non-native predators on stream-rearing salmon

USGS Publications Warehouse

Lawrence, David J.; Stewart-Koster, Ben; Olden, Julian D.; Ruesch, Aaron S.; Torgersen, Christian E.; Lawler, Joshua J.; Butcher, Don P.; Crown, Julia K.

2014-01-01

Predicting how climate change is likely to interact with myriad other stressors that threaten species of conservation concern is an essential challenge in aquatic ecosystems. This study provides a framework to accomplish this task in salmon-bearing streams of the northwestern United States, where land-use related reductions in riparian shading have caused changes in stream thermal regimes, and additional warming from projected climate change may result in significant losses of coldwater fish habitat over the next century. Predatory non-native smallmouth bass have also been introduced into many northwestern streams and their range is likely to expand as streams warm, presenting an additional challenge to the persistence of threatened Pacific salmon. The goal of this work was to forecast the interactive effects of climate change, riparian management, and non-native species on stream-rearing salmon, and to evaluate the capacity of restoration to mitigate these effects. We intersected downscaled global climate forecasts with a local-scale water temperature model to predict mid- and end-of-century temperatures in streams in the Columbia River basin; we compared one stream that is thermally impaired due to the loss of riparian vegetation and another that is cooler and has a largely intact riparian corridor. Using the forecasted stream temperatures in conjunction with fish-habitat models, we predicted how stream-rearing Chinook salmon and bass distributions would change as each stream warmed. In the highly modified stream, end-of-century warming may cause near total loss of Chinook salmon rearing habitat and a complete invasion of the upper watershed by bass. In the less modified stream, bass were thermally restricted from the upstream-most areas. In both systems, temperature increases resulted in higher predicted spatial overlap between stream-rearing Chinook salmon and potentially predatory bass in the early summer (2-4-fold increase) and greater abundance of bass. We

Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development.

PubMed

Szabo, Linda; Morey, Robert; Palpant, Nathan J; Wang, Peter L; Afari, Nastaran; Jiang, Chuan; Parast, Mana M; Murry, Charles E; Laurent, Louise C; Salzman, Julia

2015-06-16

The pervasive expression of circular RNA is a recently discovered feature of gene expression in highly diverged eukaryotes, but the functions of most circular RNAs are still unknown. Computational methods to discover and quantify circular RNA are essential. Moreover, discovering biological contexts where circular RNAs are regulated will shed light on potential functional roles they may play. We present a new algorithm that increases the sensitivity and specificity of circular RNA detection by discovering and quantifying circular and linear RNA splicing events at both annotated and un-annotated exon boundaries, including intergenic regions of the genome, with high statistical confidence. Unlike approaches that rely on read count and exon homology to determine confidence in prediction of circular RNA expression, our algorithm uses a statistical approach. Using our algorithm, we unveiled striking induction of general and tissue-specific circular RNAs, including in the heart and lung, during human fetal development. We discover regions of the human fetal brain, such as the frontal cortex, with marked enrichment for genes where circular RNA isoforms are dominant. The vast majority of circular RNA production occurs at major spliceosome splice sites; however, we find the first examples of developmentally induced circular RNAs processed by the minor spliceosome, and an enriched propensity of minor spliceosome donors to splice into circular RNA at un-annotated, rather than annotated, exons. Together, these results suggest a potentially significant role for circular RNA in human development.

Shifts in stream hydrochemistry in responses to typhoon and non-typhoon precipitation

NASA Astrophysics Data System (ADS)

Chang, Chung-Te; Huang, -Chuan, Jr.; Wang, Lixin; Shih, Yu-Ting; Lin, Teng-Chiu

2018-04-01

Climate change is projected to increase the intensity and frequency of extreme climatic events such as tropical cyclones. However, few studies have examined the responses of hydrochemical processes to climate extremes. To fill this knowledge gap, we compared the relationship between stream discharge and ion input-output budget during typhoon and non-typhoon periods in four subtropical mountain watersheds with different levels of agricultural land cover in northern Taiwan. The results indicated that the high predictability of ion input-output budgets using stream discharge during the non-typhoon period largely disappeared during the typhoon periods. For ions such as Na+, NH4+, and PO43-, the typhoon period and non-typhoon period exhibited opposite discharge-budget relationships. In other cases, the discharge-budget relationship was driven by the typhoon period, which consisted of only 7 % of the total time period. The striking differences in the discharge-ion budget relationship between the two periods likely resulted from differences in the relative contributions of surface runoff, subsurface runoff and groundwater, which had different chemical compositions, to stream discharge between the two periods. Watersheds with a 17-22 % tea plantation cover showed large increases in NO3- export with increases in stream discharge. In contrast, watersheds with 93-99 % forest cover showed very mild or no increases in NO3- export with increases in discharge and very low levels of NO3- export even during typhoon storms. The results suggest that even mild disruption of the natural vegetation could largely alter hydrochemical processes. Our study clearly illustrates significant shifts in hydrochemical responses between regular and typhoon precipitation. We propose that hydrological models should separate hydrochemical processes into regular and extreme conditions to better capture the whole spectrum of hydrochemical responses to a variety of climate conditions.

A COLLABORATIVE EFFORT TO COLLECT BIOLOGICAL, CHEMICAL AND GEOLOGICAL DATA TO QUANTIFY THE INTERRELATIONSHIPS WHICH INFLUENCE STREAM IMPAIRMENT

EPA Science Inventory

The evaluation of the current condition is critical to the management of streams impaired by sediment and other non-point source stressors, which adversely affect both physical habitat and water quality. Impairment is generally assigned based on biological criteria, which are der...

Comparing modal noise and FRD of circular and non-circular cross-section fibres

NASA Astrophysics Data System (ADS)

Sablowski, D. P.; Plüschke, D.; Weber, M.; Strassmeier, K. G.; Järvinen, A.

2016-03-01

Modal noise is a common source of noise introduced to the measurements by optical fibres and is particularly important for fibre-fed spectroscopic instruments, especially for high-resolution measurements. This noise source can limit the signal-to-noise ratio and jeopardize photon-noise limited data. The subject of the present work is to compare measurements of modal noise and focal-ratio degradation (FRD) for several commonly used fibres. We study the influence of a simple mechanical scrambling method (excenter) on both FRD and modal noise. Measurements are performed with circular and octagonal fibres from Polymicro Technology (FBP-Series) with diameters of 100, 200, and 300 μm and for square and rectangular fibres from CeramOptec, among others. FRD measurements for the same sample of fibres are performed as a function of wavelength. Furthermore, we replaced the circular fibre of the STELLA-échelle-spectrograph (SES) in Tenerife with an octagonal and found a SNR increase by a factor of 1.6 at 678 nm. It is shown in the laboratory that an excenter with a large amplitude and low frequency will not influence the FRD but will reduce modal noise rather effectively by up to 180%.

Vibration due to non-circularity of a rotating ring having discrete radial supports - With application to thin-walled rotor/magnetic bearing systems

NASA Astrophysics Data System (ADS)

Fakkaew, Wichaphon; Cole, Matthew O. T.

2018-06-01

This paper investigates the vibration arising in a thin-walled cylindrical rotor subject to small non-circularity and coupled to discrete space-fixed radial bearing supports. A Fourier series description of rotor non-circularity is incorporated within a mathematical model for vibration of a rotating annulus. This model predicts the multi-harmonic excitation of the rotor wall due to bearing interactions. For each non-circularity harmonic there is a set of distinct critical speeds at which resonance can potentially arise due to flexural mode excitation within the rotor wall. It is shown that whether each potential resonance occurs depends on the multiplicity and symmetry of the bearing supports. Also, a sufficient number of evenly spaced identical supports will eliminate low order resonances. The considered problem is pertinent to the design and operation of thin-walled rotors with active magnetic bearing (AMB) supports, for which small clearances exist between the rotor and bearing and so vibration excitation must be limited to avoid contacts. With this motivation, the mathematical model is further developed for the case of a distributed array of electromagnetic actuators controlled by feedback of measured rotor wall displacements. A case study involving an experimental system with short cylindrical rotor and a single radial AMB support is presented. The results show that flexural mode resonance is largely avoided for the considered design topology. Moreover, numerical predictions based on measured non-circularity show good agreement with measurements of rotor wall vibration, thereby confirming the validity and utility of the theoretical model.

75 FR 82374 - Notice of Final Results of Antidumping Duty Changed Circumstances Review: Certain Circular Welded...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-12-30

... Antidumping Duty Changed Circumstances Review: Certain Circular Welded Non-Alloy Steel Pipe From Mexico AGENCY... circular welded non-alloy steel pipe (circular welded pipe) from Mexico. DATES: Effective Date: December 30... on November 2, 1992. See Notice of Antidumping Duty Orders: Certain Circular Welded Non-Alloy Steel...

Evaluating Changes in Distributions of Summer Stream Temperature following Forest Harvest

NASA Astrophysics Data System (ADS)

Johnson, S. L.; Reiter, M.; Jones, J.

2016-12-01

Stream temperature heat budgets are influenced by numerous processes; changes in incoming radiation have been shown to be a major driver of increased stream temperatures. Maximum daily temperature is a commonly used metric for evaluating stream temperature responses to land use. However, single metrics are not able to fully represent the magnitude and duration of temperatures experienced by instream biota. Analyses that make use of all the data: a) more accurately characterize shifts in summer stream temperature regimes, b) quantify potential exposure to critical and non-critical temperatures, and c) help researchers and managers to better understand stream temperature responses to manipulation of streamside and watershed vegetation. Here we examine the distributions of summer stream temperatures before and after forest harvest in the Trask River Watershed Study, in northwestern Oregon. We studied 15 small streams for 10 years; half of the sites had their catchments clearcut harvested in 2012. Four sites had no buffers, with some leave trees, and three sites had 25 ft buffers on both sides. Temperatures were measured during at 30min intervals. Even though these streams are generally cold, we observed high spatial and temporal variation among sites and years, with some sites having normally distributed temperatures, while others showed skewed distributions and long tails. Forest cover, aspect or elevation were not good predictors of temperature distributions pre-harvest. Preliminary analyses using travel time of the stream water suggest that sites with hyporheic flows had narrower distributions of temperatures. After harvest, sites without buffers showed the greatest shift in distributions of temperatures and widest temperature ranges, while sites with narrow buffers showed little change. We are exploring the implications of shifts in temperature distributions before and after harvest against the known thermal tolerances for the dominant resident species (Ascaphus

Sampling frequency for water quality variables in streams: Systems analysis to quantify minimum monitoring rates.

PubMed

Chappell, Nick A; Jones, Timothy D; Tych, Wlodek

2017-10-15

Insufficient temporal monitoring of water quality in streams or engineered drains alters the apparent shape of storm chemographs, resulting in shifted model parameterisations and changed interpretations of solute sources that have produced episodes of poor water quality. This so-called 'aliasing' phenomenon is poorly recognised in water research. Using advances in in-situ sensor technology it is now possible to monitor sufficiently frequently to avoid the onset of aliasing. A systems modelling procedure is presented allowing objective identification of sampling rates needed to avoid aliasing within strongly rainfall-driven chemical dynamics. In this study aliasing of storm chemograph shapes was quantified by changes in the time constant parameter (TC) of transfer functions. As a proportion of the original TC, the onset of aliasing varied between watersheds, ranging from 3.9-7.7 to 54-79 %TC (or 110-160 to 300-600 min). However, a minimum monitoring rate could be identified for all datasets if the modelling results were presented in the form of a new statistic, ΔTC. For the eight H + , DOC and NO 3 -N datasets examined from a range of watershed settings, an empirically-derived threshold of 1.3(ΔTC) could be used to quantify minimum monitoring rates within sampling protocols to avoid artefacts in subsequent data analysis. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

Groundwater flux estimation in streams: A thermal equilibrium approach

USGS Publications Warehouse

Zhou, Yan; Fox, Garey A.; Miller, Ron B.; Mollenhauer, Robert; Brewer, Shannon K.

2018-01-01

Stream and groundwater interactions play an essential role in regulating flow, temperature, and water quality for stream ecosystems. Temperature gradients have been used to quantify vertical water movement in the streambed since the 1960s, but advancements in thermal methods are still possible. Seepage runs are a method commonly used to quantify exchange rates through a series of streamflow measurements but can be labor and time intensive. The objective of this study was to develop and evaluate a thermal equilibrium method as a technique for quantifying groundwater flux using monitored stream water temperature at a single point and readily available hydrological and atmospheric data. Our primary assumption was that stream water temperature at the monitored point was at thermal equilibrium with the combination of all heat transfer processes, including mixing with groundwater. By expanding the monitored stream point into a hypothetical, horizontal one-dimensional thermal modeling domain, we were able to simulate the thermal equilibrium achieved with known atmospheric variables at the point and quantify unknown groundwater flux by calibrating the model to the resulting temperature signature. Stream water temperatures were monitored at single points at nine streams in the Ozark Highland ecoregion and five reaches of the Kiamichi River to estimate groundwater fluxes using the thermal equilibrium method. When validated by comparison with seepage runs performed at the same time and reach, estimates from the two methods agreed with each other with an R2 of 0.94, a root mean squared error (RMSE) of 0.08 (m/d) and a Nash–Sutcliffe efficiency (NSE) of 0.93. In conclusion, the thermal equilibrium method was a suitable technique for quantifying groundwater flux with minimal cost and simple field installation given that suitable atmospheric and hydrological data were readily available.

Groundwater flux estimation in streams: A thermal equilibrium approach

NASA Astrophysics Data System (ADS)

Zhou, Yan; Fox, Garey A.; Miller, Ron B.; Mollenhauer, Robert; Brewer, Shannon

2018-06-01

Stream and groundwater interactions play an essential role in regulating flow, temperature, and water quality for stream ecosystems. Temperature gradients have been used to quantify vertical water movement in the streambed since the 1960s, but advancements in thermal methods are still possible. Seepage runs are a method commonly used to quantify exchange rates through a series of streamflow measurements but can be labor and time intensive. The objective of this study was to develop and evaluate a thermal equilibrium method as a technique for quantifying groundwater flux using monitored stream water temperature at a single point and readily available hydrological and atmospheric data. Our primary assumption was that stream water temperature at the monitored point was at thermal equilibrium with the combination of all heat transfer processes, including mixing with groundwater. By expanding the monitored stream point into a hypothetical, horizontal one-dimensional thermal modeling domain, we were able to simulate the thermal equilibrium achieved with known atmospheric variables at the point and quantify unknown groundwater flux by calibrating the model to the resulting temperature signature. Stream water temperatures were monitored at single points at nine streams in the Ozark Highland ecoregion and five reaches of the Kiamichi River to estimate groundwater fluxes using the thermal equilibrium method. When validated by comparison with seepage runs performed at the same time and reach, estimates from the two methods agreed with each other with an R2 of 0.94, a root mean squared error (RMSE) of 0.08 (m/d) and a Nash-Sutcliffe efficiency (NSE) of 0.93. In conclusion, the thermal equilibrium method was a suitable technique for quantifying groundwater flux with minimal cost and simple field installation given that suitable atmospheric and hydrological data were readily available.

Application of wave mechanics theory to fluid dynamics problems: Boundary layer on a circular cylinder including turbulence

NASA Technical Reports Server (NTRS)

Krzywoblocki, M. Z. V.

1974-01-01

The application of the elements of quantum (wave) mechanics to some special problems in the field of macroscopic fluid dynamics is discussed. Emphasis is placed on the flow of a viscous, incompressible fluid around a circular cylinder. The following subjects are considered: (1) the flow of a nonviscous fluid around a circular cylinder, (2) the restrictions imposed the stream function by the number of dimensions of space, and (3) the flow past three dimensional bodies in a viscous fluid, particularly past a circular cylinder in the symmetrical case.

Circular polarization in a non-magnetic resonant tunneling device.

PubMed

Dos Santos, Lara F; Gobato, Yara Galvão; Teodoro, Márcio D; Lopez-Richard, Victor; Marques, Gilmar E; Brasil, Maria Jsp; Orlita, Milan; Kunc, Jan; Maude, Duncan K; Henini, Mohamed; Airey, Robert J

2011-01-25

We have investigated the polarization-resolved photoluminescence (PL) in an asymmetric n-type GaAs/AlAs/GaAlAs resonant tunneling diode under magnetic field parallel to the tunnel current. The quantum well (QW) PL presents strong circular polarization (values up to -70% at 19 T). The optical emission from GaAs contact layers shows evidence of highly spin-polarized two-dimensional electron and hole gases which affects the spin polarization of carriers in the QW. However, the circular polarization degree in the QW also depends on various other parameters, including the g-factors of the different layers, the density of carriers along the structure, and the Zeeman and Rashba effects.

Circular polarization in a non-magnetic resonant tunneling device

PubMed Central

2011-01-01

We have investigated the polarization-resolved photoluminescence (PL) in an asymmetric n-type GaAs/AlAs/GaAlAs resonant tunneling diode under magnetic field parallel to the tunnel current. The quantum well (QW) PL presents strong circular polarization (values up to -70% at 19 T). The optical emission from GaAs contact layers shows evidence of highly spin-polarized two-dimensional electron and hole gases which affects the spin polarization of carriers in the QW. However, the circular polarization degree in the QW also depends on various other parameters, including the g-factors of the different layers, the density of carriers along the structure, and the Zeeman and Rashba effects. PMID:21711613

TRACING THE ORPHAN STREAM TO 55 kpc WITH RR LYRAE STARS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sesar, Branimir; Cohen, Judith G.; Bellm, Eric C.

2013-10-10

We report positions, velocities, and metallicities of 50 ab-type RR Lyrae (RRab) stars observed in the vicinity of the Orphan stellar stream. Using about 30 RRab stars classified as being likely members of the Orphan stream, we study the metallicity and the spatial extent of the stream. We find that RRab stars in the Orphan stream have a wide range of metallicities, from –1.5 dex to –2.7 dex. The average metallicity of the stream is –2.1 dex, identical to the value obtained by Newberg et al. using blue horizontal branch stars. We find that the most distant parts of themore » stream (40-50 kpc from the Sun) are about 0.3 dex more metal-poor than the closer parts (within ∼30 kpc), suggesting a possible metallicity gradient along the stream's length. We have extended the previous studies and have mapped the stream up to 55 kpc from the Sun. Even after a careful search, we did not identify any more distant RRab stars that could plausibly be members of the Orphan stream. If confirmed with other tracers, this result would indicate a detection of the end of the leading arm of the stream. We have compared the distances of Orphan stream RRab stars with the best-fit orbits obtained by Newberg et al. We find that model 6 of Newberg et al. cannot explain the distances of the most remote Orphan stream RRab stars, and conclude that the best fit to distances of Orphan stream RRab stars and to the local circular velocity is provided by potentials where the total mass of the Galaxy within 60 kpc is M{sub 60} ∼ 2.7 × 10{sup 11} M{sub ☉}, or about 60% of the mass found by previous studies. More extensive modeling that would consider non-spherical potentials and the possibility of misalignment between the stream and the orbit is highly encouraged.« less

ASI aurora search: an attempt of intelligent image processing for circular fisheye lens.

PubMed

Yang, Xi; Gao, Xinbo; Song, Bin; Wang, Nannan; Yang, Dong

2018-04-02

The circular fisheye lens exhibits an approximately 180° angular field-of-view (FOV), which is much larger than that of an ordinary lens. Thus, images captured with a circular fisheye lens are distributed non-uniformly with spherical deformation. Along with the fast development of deep neural networks for normal images, how to apply it to achieve intelligent image processing for a circular fisheye lens is a new task of significant importance. In this paper, we take the aurora images captured with all-sky-imagers (ASI) as a typical example. By analyzing the imaging principle of ASI and the magnetic characteristics of the aurora, a deformed region division (DRD) scheme is proposed to replace the region proposals network (RPN) in the advanced mask regional convolutional neural network (Mask R-CNN) framework. Thus, each image can be regarded as a "bag" of deformed regions represented with CNN features. After clustering all CNN features to generate a vocabulary, each deformed region is quantified to its nearest center for indexing. On the stage of an online search, a similarity score is computed by measuring the distances between regions in the query image and all regions in the data set, and the image with the highest value is outputted as the top rank search result. Experimental results show that the proposed method greatly improves the search accuracy and efficiency, demonstrating that it is a valuable attempt of intelligent image processing for circular fisheye lenses.

Microarray profiles reveal that circular RNA hsa_circ_0007385 functions as an oncogene in non-small cell lung cancer tumorigenesis.

PubMed

Jiang, Ming-Ming; Mai, Zhi-Tao; Wan, Shan-Zhi; Chi, Yu-Min; Zhang, Xin; Sun, Bao-Hua; Di, Qing-Guo

2018-04-01

Circular RNAs (circRNAs) are a novel class of non-protein-coding RNA. Emerging evidence indicates that circRNAs participate in the regulation of many pathophysiological processes. This study aims to explore the expression profiles and pathological effects of circRNAs in non-small cell lung cancer (NSCLC). Human circRNAs microarray analysis was performed to screen the expression profile of circRNAs in NSCLC tissue. Expressions of circRNA and miRNA in NSCLC tissues and cells were quantified by qRTPCR. Functional experiments were performed to investigate the biological functions of circRNA, including CCK-8 assay, colony formation assay, transwell assay and xenograft in vivo assay. Human circRNAs microarray revealed a total 957 abnormally expressed circRNAs (> twofold, P < 0.05) in NSCLC tissue compared with adjacent normal tissue. In further studies, hsa_circ_0007385 was significantly up regulated in NSCLC tissue and cells. In vitro experiments with hsa_circ_0007385 knockdown resulted in significant suppression of the proliferation, migration and invasion of NSCLC cells. In vivo xenograft assay using hsa_circ_0007385 knockdown, significantly reduced tumor growth. Bioinformatics analysis and luciferase reporter assay verified the potential target miR-181, suggesting a possible regulatory pathway for hsa_circ_0007385. In summary, results suggest hsa_circ_0007385 plays a role in NSCLC tumorigenesis, providing a potential therapeutic target for NSCLC.

Risk management of hazardous substances in a circular economy.

PubMed

Bodar, Charles; Spijker, Job; Lijzen, Johannes; Waaijers-van der Loop, Susanne; Luit, Richard; Heugens, Evelyn; Janssen, Martien; Wassenaar, Pim; Traas, Theo

2018-04-15

The ambitions for a circular economy are high and unambiguous, but day-to-day experience shows that the transition still has many difficulties to overcome. One of the current hurdles is the presence of hazardous substances in waste streams that enter or re-enter into the environment or the technosphere. The key question is: do we have the appropriate risk management tools to control any risks that might arise from the re-using and recycling of materials? We present some recent cases that illustrate current practice and complexity in the risk management of newly-formed circular economy chains. We also highlight how separate legal frameworks are still disconnected from each other in these cases, and how circular economy initiatives interlink with the European REACH regulation. Furthermore, we introduce a novel scheme describing how to decide whether a(n)(additional) risk assessment is necessary with regard to the re-use of materials containing hazardous substances. Finally, we present our initial views on new concepts for the fundamental integration of sustainability and safety aspects. These concepts should be the building blocks for the near future shifts in both policy frameworks and voluntary initiatives that support a sound circular economy transition. Copyright © 2018 Elsevier Ltd. All rights reserved.

75 FR 44763 - Certain Circular Welded Non-Alloy Steel Pipe From Mexico; Extension of Time Limit for Preliminary...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-07-29

...-Alloy Steel Pipe From Mexico; Extension of Time Limit for Preliminary Results of Antidumping Duty... review of the antidumping duty order on certain circular welded non- alloy steel pipe from Mexico. We... preliminary results of this review within the original time frame because we require additional time with...

Quantifying fish habitat associated with stream simulation design culverts in northern Wisconsin

Treesearch

A. Timm; D. Higgins; J. Stanovick; R. Kolka; S. Eggert

2017-01-01

This study investigated the effects of culvert replacement design on fish habitat and fish weight by comparing substrate diversity and weight at three stream simulation (SS)-design and three bankfull and backwater (BB)-design sites on the Chequamegon-Nicolet National Forest, Wisconsin. Stream channel cross-sections, Wolman substrate particle counts, and single-pass...

Quantifying the Contribution of Regional Aquifers to Stream Flow in the Upper Colorado River Basin

NASA Astrophysics Data System (ADS)

Masbruch, M.; Dickinson, J.

2017-12-01

The growing population of the arid and semiarid southwestern U.S. relies on over-allocated surface water resources and poorly quantified groundwater resources. In the Upper Colorado River Basin, recent studies have found that about 50 percent of the surface water at U.S. Geological Survey (USGS) stream gages is derived from groundwater contributions as base flow. Prior USGS and other studies for the Colorado Plateau region have mainly examined groundwater and surface water as separate systems, and there has yet to be regional synthesis of groundwater availability in aquifers that contribute to surface water. A more physically based representation of groundwater flow could improve simulations of surface-water capture by groundwater pumping, and changes of groundwater discharge to surface water caused by possible shifts in the distribution, magnitude, and timing of recharge in the future. We seek to improve conceptual and numerical models of groundwater and surface-water interactions in the Colorado Plateau region as part of a USGS regional groundwater availability assessment. Numerical modeling is used to simulate and quantify the base flow from groundwater to the Colorado River and its major tributaries. Groundwater/surface-water interactions will be simulated using the USGS code GSFLOW, which couples the Precipitation Runoff Modeling System (PRMS) to the groundwater flow model MODFLOW. Initial results suggest that interactions between groundwater and surface water are important for projecting long-term changes in surface water budgets.

A linear shock cell model for non-circular jets using conformal mapping with a pseudo-spectral hybrid scheme

NASA Technical Reports Server (NTRS)

Bhat, Thonse R. S.; Baty, Roy S.; Morris, Philip J.

1990-01-01

The shock structure in non-circular supersonic jets is predicted using a linear model. This model includes the effects of the finite thickness of the mixing layer and the turbulence in the jet shear layer. A numerical solution is obtained using a conformal mapping grid generation scheme with a hybrid pseudo-spectral discretization method. The uniform pressure perturbation at the jet exit is approximated by a Fourier-Mathieu series. The pressure at downstream locations is obtained from an eigenfunction expansion that is matched to the pressure perturbation at the jet exit. Results are presented for a circular jet and for an elliptic jet of aspect ratio 2.0. Comparisons are made with experimental data.

Stream salamanders as indicators of stream quality in Maryland, USA

USGS Publications Warehouse

Southerland, M.T.; Jung, R.E.; Baxter, D.P.; Chellman, I.C.; Mercurio, G.; Volstad, J.H.

2004-01-01

Biological indicators are critical to the protection of small, headwater streams and the ecological values they provide. Maryland and other state monitoring programs have determined that fish indicators are ineffective in small streams, where stream salamanders may replace fish as top predators. Because of their life history, physiology, abundance, and ubiquity, stream salamanders are likely representative of biological integrity in these streams. The goal of this study was to determine whether stream salamanders are effective indicators of ecological conditions across biogeographic regions and gradients of human disturbance. During the summers of 2001 and 2002, we intensively surveyed for stream salamanders at 76 stream sites located west of the Maryland Coastal Plain, sites also monitored by the Maryland Biological Stream Survey (MBSS) and City of Gaithersburg. We found 1,584 stream salamanders, including all eight species known in Maryland, using two 15 ? 2 m transects and two 4 m2 quadrats that spanned both stream bank and channel. We performed removal sampling on transects to estimate salamander species detection probabilities, which ranged from 0.67-0.85. Stepwise regressions identified 15 of 52 non-salamander variables, representing water quality, physical habitat, land use, and biological conditions, which best predicted salamander metrics. Indicator development involved (1) identifying reference (non-degraded) and degraded sites (using percent forest, shading, riparian buffer width, aesthetic rating, and benthic macroinvertebrate and fish indices of biotic integrity); (2) testing 12 candidate salamander metrics (representing species richness and composition, abundance, species tolerance, and reproductive function) for their ability to distinguish reference from degraded sites; and (3) combining metrics into an index that effectively discriminated sites according to known stream conditions. Final indices for Highlands, Piedmont, and Non-Coastal Plain

EFFECTS OF HYDROLOGY ON NITROGEN PROCESSING IN A RESTORED URBAN STREAM

EPA Science Inventory

In 2001, EPA undertook an intensive research effort to evaluate the impact of stream restoration on water quality at a degraded stream in an urban watershed. An essential piece of this comprehensive study was to characterize, measure and quantify stream ground water/ stream wate...

Main-streaming NFP into the Department of Health of the Philippines: opportunities and challenges.

PubMed

Infantado, R B

1997-01-01

In 1994, the Department of Health (DOH) of the Philippines issued a circular which reaffirmed natural family planning (NFP) as one of the basic services to be offered in all government family planning service sites and urged family planning workers to develop competence in teaching NFP methods. Although the circular represented a major policy breakthrough for the main-streaming of NFP it found the department without the capability or experience to directly provide NFP services. The two approaches the department is taking to respond to this new policy initiative are described in this paper. The selection of these approaches was influenced by the devolution of central government authority to local government units. The approaches include developing department capability in NFP training, service provision and service installation and creating a supportive program and policy environment. DOH partnership with an NFP non-government organization (NGO) has been critical in developing NFP capability within the government sector, particularly in NFP training and service installation.

CircularLogo: A lightweight web application to visualize intra-motif dependencies.

PubMed

Ye, Zhenqing; Ma, Tao; Kalmbach, Michael T; Dasari, Surendra; Kocher, Jean-Pierre A; Wang, Liguo

2017-05-22

The sequence logo has been widely used to represent DNA or RNA motifs for more than three decades. Despite its intelligibility and intuitiveness, the traditional sequence logo is unable to display the intra-motif dependencies and therefore is insufficient to fully characterize nucleotide motifs. Many methods have been developed to quantify the intra-motif dependencies, but fewer tools are available for visualization. We developed CircularLogo, a web-based interactive application, which is able to not only visualize the position-specific nucleotide consensus and diversity but also display the intra-motif dependencies. Applying CircularLogo to HNF6 binding sites and tRNA sequences demonstrated its ability to show intra-motif dependencies and intuitively reveal biomolecular structure. CircularLogo is implemented in JavaScript and Python based on the Django web framework. The program's source code and user's manual are freely available at http://circularlogo.sourceforge.net . CircularLogo web server can be accessed from http://bioinformaticstools.mayo.edu/circularlogo/index.html . CircularLogo is an innovative web application that is specifically designed to visualize and interactively explore intra-motif dependencies.

U.S. EPA'S SURVEY OF THE NATION'S NON-WADEABLE STREAMS AND RIVERS

EPA Science Inventory

The U.S. EPA is engaging states, tribes and other parties in designing a national survey to assess the condition of non-wadeable rivers and streams. The rivers survey is one of a series of surveys being implemented as a partnership among states, tribes and U.S. EPA, with the coll...

Influence of a non-uniform free stream velocity distribution on performance/acoustics of counterrotating propeller configurations

NASA Astrophysics Data System (ADS)

Allen, C. S.; Korkan, K. D.

1991-01-01

A methodology for predicting the performance and acoustics of counterrotating propeller configurations was modified to take into account the effects of a non-uniform free stream velocity distribution entering the disk plane. The method utilizes the analytical techniques of Lock and Theodorson as described by Davidson to determine the influence of the non-uniform free stream velocity distribution in the prediction of the steady aerodynamic loads. The unsteady load contribution is determined according to the procedure of Leseture with rigid helical tip vortices simulating the previous rotations of each propeller. The steady and unsteady loads are combined to obtain the total blade loading required for acoustic prediction employing the Ffowcs Williams-Hawking equation as simplified by Succi with the assumption of compact sources. The numerical method is used to redesign the previous commuter class counterrotating propeller configuration of Denner. The specifications, performance, and acoustics of the new design are compared with the results of Denner thereby determining the influence of the non-uniform free stream velocity distribution on these metrics.

Detecting and characterizing circular RNAs

PubMed Central

Jeck, William R.; Sharpless, Norman E.

2014-01-01

Circular RNA transcripts were first identified in the early 1990s but knowledge of these species has remained limited, as their study has been difficult through traditional methods of RNA analysis. Now, novel bioinformatic approaches coupled with biochemical enrichment strategies and deep sequencing have allowed comprehensive studies of circular RNA species. Recent studies have revealed thousands of endogenous circular RNAs (circRNAs) in mammalian cells, some of which are highly abundant and evolutionarily conserved. Evidence is emerging that some circRNAs might regulate microRNA (miRNA) function, and roles in transcriptional control have also been suggested. Therefore, study of this class of non-coding RNAs has potential implications for therapeutic and research applications. We believe the key future challenge to the field will be to understand the regulation and function of these unusual molecules. PMID:24811520

Distribution and abundance of stream fishes in relation to barriers: implications for monitoring stream recovery after barrier removal

USGS Publications Warehouse

Zydlewski, Joseph D.; Coghlan, Stephen M.; Gardner, C.; Saunders, R.

2011-01-01

Dams are ubiquitous in coastal regions and have altered stream habitats and the distribution and abundance of stream fishes in those habitats by disrupting hydrology, temperature regime and habitat connectivity. Dam removal is a common restoration tool, but often the response of the fish assemblage is not monitored rigorously. Sedgeunkedunk Stream, a small tributary to the Penobscot River (Maine, USA), has been the focus of a restoration effort that includes the removal of two low-head dams. In this study, we quantified fish assemblage metrics along a longitudinal gradient in Sedgeunkedunk Stream and also in a nearby reference stream. By establishing pre-removal baseline conditions and associated variability and the conditions and variability immediately following removal, we can characterize future changes in the system associated with dam removal. Over 2 years prior to dam removal, species richness and abundance in Sedgeunkedunk Stream were highest downstream of the lowest dam, lowest immediately upstream of that dam and intermediate farther upstream; patterns were similar in the reference stream. Although seasonal and annual variation in metrics within each site was substantial, the overall upstream-to-downstream pattern along the stream gradient was remarkably consistent prior to dam removal. Immediately after dam removal, we saw significant decreases in richness and abundance downstream of the former dam site and a corresponding increase in fish abundance upstream of the former dam site. No such changes occurred in reference sites. Our results show that by quantifying baseline conditions in a small stream before restoration, the effects of stream restoration efforts on fish assemblages can be monitored successfully. These data set the stage for the long-term assessment of Sedgeunkedunk Stream and provide a simple methodology for assessment in other restoration projects.

Circular RNA profiling reveals that circular RNAs from ANXA2 can be used as new biomarkers for multiple sclerosis.

PubMed

Iparraguirre, Leire; Muñoz-Culla, Maider; Prada-Luengo, Iñigo; Castillo-Triviño, Tamara; Olascoaga, Javier; Otaegui, David

2017-09-15

Multiple sclerosis is an autoimmune disease, with higher prevalence in women, in whom the immune system is dysregulated. This dysregulation has been shown to correlate with changes in transcriptome expression as well as in gene-expression regulators, such as non-coding RNAs (e.g. microRNAs). Indeed, some of these have been suggested as biomarkers for multiple sclerosis even though few biomarkers have reached the clinical practice. Recently, a novel family of non-coding RNAs, circular RNAs, has emerged as a new player in the complex network of gene-expression regulation. MicroRNA regulation function through a 'sponge system' and a RNA splicing regulation function have been proposed for the circular RNAs. This regulating role together with their high stability in biofluids makes them seemingly good candidates as biomarkers. Given the dysregulation of both protein-coding and non-coding transcriptome that have been reported in multiple sclerosis patients, we hypothesised that circular RNA expression may also be altered. Therefore, we carried out expression profiling of 13.617 circular RNAs in peripheral blood leucocytes from multiple sclerosis patients and healthy controls finding 406 differentially expressed (P-value < 0.05, Fold change > 1.5) and demonstrate after validation that, circ_0005402 and circ_0035560 are underexpressed in multiple sclerosis patients and could be used as biomarkers of the disease. © The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Circular Coinduction

NASA Technical Reports Server (NTRS)

Rosu, Grigore; Goguen, Joseph; Norvig, Peter (Technical Monitor)

2001-01-01

Circular coinduction is a technique for behavioral reasoning that extends cobasis coinduction to specifications with circularities. Because behavioral satisfaction is not recursively enumerable, no algorithm can work for every behavioral statement. However. algorithms using circular coinduction can prove every practical behavioral result that we know. This paper proves the correctness of circular coinduction and some consequences.

Circular RNAs: Unexpected outputs of many protein-coding genes

PubMed Central

Wilusz, Jeremy E.

2017-01-01

ABSTRACT Pre-mRNAs from thousands of eukaryotic genes can be non-canonically spliced to generate circular RNAs, some of which accumulate to higher levels than their associated linear mRNA. Recent work has revealed widespread mechanisms that dictate whether the spliceosome generates a linear or circular RNA. For most genes, circular RNA biogenesis via backsplicing is far less efficient than canonical splicing, but circular RNAs can accumulate due to their long half-lives. Backsplicing is often initiated when complementary sequences from different introns base pair and bring the intervening splice sites close together. This process is further regulated by the combinatorial action of RNA binding proteins, which allow circular RNAs to be expressed in unique patterns. Some genes do not require complementary sequences to generate RNA circles and instead take advantage of exon skipping events. It is still unclear what most mature circular RNAs do, but future investigations into their functions will be facilitated by recently described methods to modulate circular RNA levels. PMID:27571848

Efficacy of environmental DNA to detect and quantify Brook Trout populations in headwater streams of the Adirondack Mountains, New York

USGS Publications Warehouse

Baldigo, Barry P.; Sporn, Lee Ann; George, Scott D.; Ball, Jacob

2016-01-01

Environmental DNA (eDNA) analysis is rapidly evolving as a tool for monitoring the distributions of aquatic species. Detection of species’ populations in streams may be challenging because the persistence time for intact DNA fragments is unknown and because eDNA is diluted and dispersed by dynamic hydrological processes. During 2015, the DNA of Brook Trout Salvelinus fontinalis was analyzed from water samples collected at 40 streams across the Adirondack region of upstate New York, where Brook Trout populations were recently quantified. Study objectives were to evaluate different sampling methods and the ability of eDNA to accurately predict the presence and abundance of resident Brook Trout populations. Results from three-pass electrofishing surveys indicated that Brook Trout were absent from 10 sites and were present in low (<100 fish/0.1 ha), moderate (100–300 fish/0.1 ha), and high (>300 fish/0.1 ha) densities at 9, 11, and 10 sites, respectively. The eDNA results correctly predicted the presence and confirmed the absence of Brook Trout at 85.0–92.5% of the study sites; eDNA also explained 44% of the variability in Brook Trout population density and 24% of the variability in biomass. These findings indicate that eDNA surveys will enable researchers to effectively characterize the presence and abundance of Brook Trout and other species’ populations in headwater streams across the Adirondack region and elsewhere.

Accuracy and repeatability positioning of high-performancel athe for non-circular turning

NASA Astrophysics Data System (ADS)

Majda, Paweł; Powałka, Bartosz

2017-11-01

This paper presents research on the accuracy and repeatability of CNC axis positioning in an innovative lathe with an additional Xs axis. This axis is used to perform movements synchronized with the angular position of the main drive, i.e. the spindle, and with the axial feed along the Z axis. This enables the one-pass turning of non-circular surfaces, rope and trapezoidal threads, as well as the surfaces of rotary tools such as a gear cutting hob, etc. The paper presents and discusses the interpretation of results and the calibration effects of positioning errors in the lathe's numerical control system. Finally, it shows the geometric characteristics of the rope thread turned at various spindle speeds, including before and after-correction of the positioning error of the Xs axis.

NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing and circular RNA) with a good balance between sensitivity and precision.

PubMed

Chuang, Trees-Juen; Wu, Chan-Shuo; Chen, Chia-Ying; Hung, Li-Yuan; Chiang, Tai-Wei; Yang, Min-Yu

2016-02-18

Analysis of RNA-seq data often detects numerous 'non-co-linear' (NCL) transcripts, which comprised sequence segments that are topologically inconsistent with their corresponding DNA sequences in the reference genome. However, detection of NCL transcripts involves two major challenges: removal of false positives arising from alignment artifacts and discrimination between different types of NCL transcripts (trans-spliced, circular or fusion transcripts). Here, we developed a new NCL-transcript-detecting method ('NCLscan'), which utilized a stepwise alignment strategy to almost completely eliminate false calls (>98% precision) without sacrificing true positives, enabling NCLscan outperform 18 other publicly-available tools (including fusion- and circular-RNA-detecting tools) in terms of sensitivity and precision, regardless of the generation strategy of simulated dataset, type of intragenic or intergenic NCL event, read depth of coverage, read length or expression level of NCL transcript. With the high accuracy, NCLscan was applied to distinguishing between trans-spliced, circular and fusion transcripts on the basis of poly(A)- and nonpoly(A)-selected RNA-seq data. We showed that circular RNAs were expressed more ubiquitously, more abundantly and less cell type-specifically than trans-spliced and fusion transcripts. Our study thus describes a robust pipeline for the discovery of NCL transcripts, and sheds light on the fundamental biology of these non-canonical RNA events in human transcriptome. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

Turbulent flow computation in a circular U-Bend

NASA Astrophysics Data System (ADS)

Miloud, Abdelkrim; Aounallah, Mohammed; Belkadi, Mustapha; Adjlout, Lahouari; Imine, Omar; Imine, Bachir

2014-03-01

Turbulent flows through a circular 180° curved bend with a curvature ratio of 3.375, defined as the the bend mean radius to pipe diameter is investigated numerically for a Reynolds number of 4.45×104. The computation is performed for a U-Bend with full long pipes at the entrance and at the exit. The commercial ANSYS FLUENT is used to solve the steady Reynolds-Averaged Navier-Stokes (RANS) equations. The performances of standard k-ɛ and the second moment closure RSM models are evaluated by comparing their numerical results against experimental data and testing their capabilities to capture the formation and extend this turbulence driven vortex. It is found that the secondary flows occur in the cross-stream half-plane of such configurations and primarily induced by high anisotropy of the cross-stream turbulent normal stresses near the outer bend.

The National Stream Quality Accounting Network (NASQAN) - Some questions and answers

USGS Publications Warehouse

Ficke, John F.; Hawkinson, Richard O.

1975-01-01

One of the major new efforts of the U.S. Geological Survey is the National Stream Quality Accounting Network (NASQAN). This circular is intended to answer some of the frequently asked questions concerning concepts used in establishing NASQAN, its purposes, design, value, and future plans.

Instream Attenuation of Nitrogen and Phosphorus in Non-Point Source Dominated Streams: Hydrologic and Biogeochemical Controls

NASA Astrophysics Data System (ADS)

Bray, E. N.; Chen, X.; Keller, A. A.

2010-12-01

Non-point source inputs of total nitrogen (TN) and total phosphorus (TP) in rivers are the leading causes of water quality degradation in the United States (Turner and Rabalais, 2003; Broussard and Turner, 2009). Yet it remains a challenge to adequately quantify the relative role and influence of physical hydrological processes versus biogeochemical processes on the attenuation of TN and TP for individual river reaches. A watershed-scale study of instream dynamics and attenuation of TN and TP in northeastern U.S. headwater streams demonstrates that physical and hydrological processes exert greater control over nutrient removal than biogeochemical processes. To explore these interactions under various attenuation scenarios, we developed the watershed-scale model (WARMF) for 97 catchments to simulate watershed processes, hydrology, and diffuse source loads of nutrients. We simulated a hypothetical nutrient release at a rate of 1 kg/d of TN (50% as ammonium and 50% as nitrate) and TP (100% as phosphate) to predict response lengths of downstream catchments. Resulting attenuation factors are presented as the change in mean load at a given location, normalized to the change in the catchment in which the load is applied. Results indicate that for most catchments, the TN and TP load increase is attenuated from the stream within a few tens of kilometers. Fifty percent attenuation occurs across length scales ranging from a few hundreds of meters to kilometers if the load is introduced in the headwaters, indicating the most rapid nutrient removal occurs in the smallest headwater streams but generally decreases with distance downstream. There are some differences in the attenuation factors for TN and TP, although the pattern of attenuation is the same. Sensitivity analyses highlight five hydrological parameters of paramount importance to concentrations of N and P, namely precipitation, evaporation coefficients (magnitude and skewness), soil layer thickness, soil saturated

QUANTIFYING STREAM STRUCTURAL PHYSICAL HABITAT ATTRIBUTES USING LIDAR AND HYPERSPECTRAL IMAGERY

EPA Science Inventory

Structural physical habitat attributes include indices of stream size, channel gradient, substrate size, habitat complexity and cover, riparian vegetation cover and structure, anthropogenic disturbances and channel-riparian interaction.

A Simplified Design with a Toothed Belt and Non-Circular Pulleys to Separate Parts from a Magazine File

NASA Astrophysics Data System (ADS)

Hanke, U.; Modler, K.-H.; Neumann, R.; Fischer, C.

The objective of this paper is to simplify a very complex guidance mechanism, currently used for lid separating issues in a packaging-machine. The task of this machine is to pick up a lid from a magazine file, rotate it around 180° and place it on tins. The developed mechanism works successfully but with a very complex construction. It consists of a planetary cam mechanism, combined with a toothed gear (with a constant transmission ratio) and a guiding mechanism with a toothed belt and circular pulleys. Such complex constructions are very common in industrial solutions. The idea of the authors is to show a much simpler design in solving the same problem. They developed a guidance mechanism realizing the same function, consisting only of a toothed belt with non-circular pulleys. The used parts are common trade articles.

Spiral Plating Method To Quantify the Six Major Non-O157 Escherichia coli Serogroups in Cattle Feces.

PubMed

Shridhar, Pragathi B; Noll, Lance W; Cull, Charley A; Shi, Xiaorong; Cernicchiaro, Natalia; Renter, David G; Bai, Jianfa; Nagaraja, T G

2017-04-17

Cattle are a major reservoir of the six major Shiga toxin-producing non-O157 Escherichia coli (STEC) serogroups (O26, O45, O103, O111, O121, and O145) responsible for foodborne illnesses in humans. Besides prevalence in feces, the concentrations of STEC in cattle feces play a major role in their transmission dynamics. A subset of cattle, referred to as super shedders, shed E. coli O157 at high concentrations (≥4 log CFU/g of feces). It is not known whether a similar pattern of fecal shedding exists for non-O157. Our objectives were to initially validate the spiral plating method to quantify the six non-O157 E. coli serogroups with pure cultures and culture-spiked fecal samples and then determine the applicability of the method and compare it with multiplex quantitative PCR (mqPCR) assays for the quantification of the six non-O157 E. coli serogroups in cattle fecal samples collected from commercial feedlots. Quantification limits of the spiral plating method were 3 log, 3 to 4 log, and 3 to 5 log CFU/mL or CFU/g for individual cultures, pooled pure cultures, and cattle fecal samples spiked with pooled pure cultures, respectively. Of the 1,152 cattle fecal samples tested from eight commercial feedlots, 122 (10.6%) and 320 (27.8%) harbored concentrations ≥4 log CFU/g of one or more of the six serogroups of non-O157 by spiral plating and mqPCR methods, respectively. A majority of quantifiable samples, detected by either spiral plating (135 of 137, 98.5%) or mqPCR (239 of 320, 74.7%), were shedding only one serogroup. Only one of the quantifiable samples was positive for a serogroup carrying Shiga toxin (stx 1 ) and intimin (eae) genes; 38 samples were positive for serogroups carrying the intimin gene. In conclusion, the spiral plating method can be used to quantify non-O157 serogroups in cattle feces, and our study identified a subset of cattle that was super shedders of non-O157 E. coli . The method has the advantage of quantifying non-O157 STEC, unlike mqPCR that

Groundtruthing and potential for predicting acid deposition impacts in headwater streams using bedrock geology, GIS, angling, and stream chemistry.

PubMed

Kirby, C S; McInerney, B; Turner, M D

2008-04-15

Atmospheric acid deposition is of environmental concern worldwide, and the determination of impacts in remote areas can be problematic. Rainwater in central Pennsylvania, USA, has a mean pH of approximately 4.4. Bedrock varies dramatically in its ability to neutralize acidity. A GIS database simplified reconnaissance of non-carbonate bedrock streams in the Valley and Ridge Province and identified potentially chronically impacted headwater streams, which were sampled for chemistry and brook trout. Stream sites (n=26) that originate in and flow through the Tuscarora had a median pH of 5.0 that was significantly different from other formations. Shawangunk streams (n=6) and non-Tuscarora streams (n=20) had a median pH of 6.0 and 6.3, respectively. Mean alkalinity for non-Tuscarora streams (2.6 mg/L CaCO(3)) was higher than the mean for Tuscarora streams (0.5 mg/L). Lower pH and alkalinity suggest that the buffering capability of the Tuscarora is inferior to that of adjacent sandstones. Dissolved aluminum concentrations were much higher for Tuscarora streams (0.2 mg/L; approximately the lethal limit for brook trout) than for non-Tuscarora streams (0.03 mg/L) or Shawangunk streams (0.02 mg/L). Hook-and-line methods determined the presence/absence of brook trout in 47 stream reaches with suitable habitat. Brook trout were observed in 21 of 22 non-Tuscarora streams, all 6 Shawangunk streams, and only 9 of 28 Tuscarora stream sites. Carefully-designed hook-and-line sampling can determine the presence or absence of brook trout and help confirm biological impacts of acid deposition. 15% of 334 km of Tuscarora stream lengths are listed as "impaired" due to atmospheric deposition by the Pennsylvania Department of Environmental Protection. 65% of the 101 km of Tuscarora stream lengths examined in this study were impaired.

Quantifying non-Markovianity of continuous-variable Gaussian dynamical maps

DOE Office of Scientific and Technical Information (OSTI.GOV)

Vasile, Ruggero; Maniscalco, Sabrina; Paris, Matteo G. A.

2011-11-15

We introduce a non-Markovianity measure for continuous-variable open quantum systems based on the idea put forward in H.-P. Breuer et al.[Phys. Rev. Lett. 103, 210401 (2009);], that is, by quantifying the flow of information from the environment back to the open system. Instead of the trace distance we use here the fidelity to assess distinguishability of quantum states. We employ our measure to evaluate non-Markovianity of two paradigmatic Gaussian channels: the purely damping channel and the quantum Brownian motion channel with Ohmic environment. We consider different classes of Gaussian states and look for pairs of states maximizing the backflow ofmore » information. For coherent states we find simple analytical solutions, whereas for squeezed states we provide both exact numerical and approximate analytical solutions in the weak coupling limit.« less

A novel environmental DNA approach to quantify the cryptic invasion of non-native genotypes.

PubMed

Uchii, Kimiko; Doi, Hideyuki; Minamoto, Toshifumi

2016-03-01

The invasion of non-native species that are closely related to native species can lead to competitive elimination of the native species and/or genomic extinction through hybridization. Such invasions often become serious before they are detected, posing unprecedented threats to biodiversity. A Japanese native strain of common carp (Cyprinus carpio) has become endangered owing to the invasion of non-native strains introduced from the Eurasian continent. Here, we propose a rapid environmental DNA-based approach to quantitatively monitor the invasion of non-native genotypes. Using this system, we developed a method to quantify the relative proportion of native and non-native DNA based on a single-nucleotide polymorphism using cycling probe technology in real-time PCR. The efficiency of this method was confirmed in aquarium experiments, where the quantified proportion of native and non-native DNA in the water was well correlated to the biomass ratio of native and non-native genotypes. This method provided quantitative estimates for the proportion of native and non-native DNA in natural rivers and reservoirs, which allowed us to estimate the degree of invasion of non-native genotypes without catching and analysing individual fish. Our approach would dramatically facilitate the process of quantitatively monitoring the invasion of non-native conspecifics in aquatic ecosystems, thus revealing a promising method for risk assessment and management in biodiversity conservation. © 2015 John Wiley & Sons Ltd.

76 FR 62148 - Title VI; Proposed Circular, Environmental Justice; Proposed Circular

Federal Register 2010, 2011, 2012, 2013, 2014

2011-10-06

...-0055] Title VI; Proposed Circular, Environmental Justice; Proposed Circular AGENCY: Federal Transit... the September 29, 2011, Federal Register Notices titled ``Title VI; Proposed Circular'' and... September 29, 2011, Federal Register Notices titled ``Title VI; Proposed Circular'' (76 FR 60593) and...

Using isotopes to quantify evaporation and non-stationary transit times distributions in lake water budgets

NASA Astrophysics Data System (ADS)

Smith, A. A.; Tetzlaff, D.; Soulsby, C.

2017-12-01

Evaporative fluxes from northern lakes are essential components of catchment water balances, providing large supplies of water to the atmosphere, and affecting downstream water availability. However, measurement of lake evaporation is difficult in many catchments due to remoteness and inaccessibility. Evaporative flux may also influence mean transit times of lakes and catchments, identified through water- and tracer mass-balance. We combined stable water isotopes (δ2H and δ18O), transit, and residence time distributions in a non-stationary transit time model to estimate the evaporative flux from two lakes in the Scottish Highlands. The lakes were in close proximity to each other ( 2km), shallow (mean depth, 1.5 m) with one large (0.88km2) and one small (0.4km2). Model calibration used measurements of precipitation, air temperature, water level, and isotopic stream compositions of lake inflow and outflows. Evaporation flux was identified using lake fractionation of δ2H and δ18O. Mixing patterns of the lakes and their respective outlet isotopic compositions were accounted for by comparing three probability distributions for discharge and evaporation. We found that the evaporation flux was strongly influenced by these discharge and evaporation distributions. Decreased mixing within the lake resulted in greater evaporation fluxes. One of the three distributions yielded similar mean daily evaporation and uncertainty for both lakes (max 5mm/day), while evaporation using the other two distributions was inconsistent between the lakes. Importantly, our approach also estimated distributions of evaporation age, which were significantly different between the lakes, reflecting a combination of inflow stream magnitude and the mixing regimes. The mean evaporation flux age of the large lake was 160 days, and 14 days for the small lake. Our integrated approach of stable isotopes, time variant transit time distributions has shown to be a useful tool for quantifying evaporative

Genome-wide Discovery of Circular RNAs in the Leaf and Seedling Tissues of Arabidopsis Thaliana

PubMed Central

Dou, Yongchao; Li, Shengjun; Yang, Weilong; Liu, Kan; Du, Qian; Ren, Guodong; Yu, Bin; Zhang, Chi

2017-01-01

Background: Recently, identification and functional studies of circular RNAs, a type of non-coding RNAs arising from a ligation of 3’ and 5’ ends of a linear RNA molecule, were conducted in mammalian cells with the development of RNA-seq technology. Method: Since compared with animals, studies on circular RNAs in plants are less thorough, a genome-wide identification of circular RNA candidates in Arabidopsis was conducted with our own developed bioinformatics tool to several existing RNA-seq datasets specifically for non-coding RNAs. Results: A total of 164 circular RNA candidates were identified from RNA-seq data, and 4 circular RNA transcripts, including both exonic and intronic circular RNAs, were experimentally validated. Interestingly, our results show that circular RNA transcripts are enriched in the photosynthesis system for the leaf tissue and correlated to the higher expression levels of their parent genes. Sixteen out of all 40 genes that have circular RNA candidates are related to the photosynthesis system, and out of the total 146 exonic circular RNA candidates, 63 are found in chloroplast. PMID:29081691

Integrated assessment of sources, chemical stressors and stream quality along a groundwater fed stream system

NASA Astrophysics Data System (ADS)

Løgstrup Bjerg, Poul; Sonne, Anne T.; Rønde, Vinni; McKnight, Ursula S.

2016-04-01

Streams are impacted by significant contamination at the catchment scale, as they are often locations of multiple chemical stressor inputs. The European Water Framework Directive requires EU member states to ensure good chemical and ecological status of surface water bodies by 2027. This requires monitoring of stream water quality, comparison with environmental quality standards (EQS) and assessment of ecological status. However, the achievement of good status of stream water also requires a strong focus on contaminant sources, pathways and links to stream water impacts, so source management and remedial measures can be implemented. Fate and impacts of different contaminant groups are governed by different processes and are dependent on the origin (geogenic, anthropogenic), source type (point or diffuse) and pathway of the contaminant. To address this issue, we identified contaminant sources and chemical stressors on a groundwater-fed stream to quantify the contaminant discharges, link the chemical impact and stream water quality and assess the main chemical risk drivers in the stream system potentially driving ecological impact. The study was conducted in the 8 m wide Grindsted stream (Denmark) along a 16 km stream stretch that is potentially impacted by two contaminated sites (Grindsted Factory site, Grindsted Landfill), fish farms, waste water discharges, and diffuse sources from agriculture and urban areas. Water samples from the stream and the hyporheic zone as well as bed sediment samples were collected during three campaigns in 2012 and 2014. Data for xenobiotic organic groundwater contaminants, pesticides, heavy metals, general water chemistry, physical conditions and stream flow were collected. The measured chemical concentrations were converted to toxic units (TU) based on the 48h acute toxicity tests with D. magna. The results show a substantial impact of the Grindsted Factory site at a specific stretch of the stream. The groundwater plume caused

Circularly polarized luminescence of syndiotactic polystyrene

NASA Astrophysics Data System (ADS)

Rizzo, Paola; Abbate, Sergio; Longhi, Giovanna; Guerra, Gaetano

2017-11-01

Syndiotactic polystyrene (s-PS) films, when crystallized from the amorphous state by temporary sorption of non-racemic guest molecules (like carvone) not only exhibit unusually high optical activity, both in the UV-Visible and Infrared ranges, but also present circularly polarized luminescence (CPL) with high dissymmetry ratios (g = ΔI/I values in the range 0.02-0.03). Experimental evidences provide support, rather than to the usual molecular circular dichroism, to a supramolecular chiral optical response being extrinsic to the site of photon absorption and emission, possibly associated with a helical morphology of s-PS crystallites.

Regional Curves of Bankfull Channel Geometry for Non-Urban Streams in the Piedmont Physiographic Province, Virginia

USGS Publications Warehouse

Lotspeich, R. Russell

2009-01-01

Natural-channel design involves constructing a stream channel with the dimensions, slope, and plan-view pattern that would be expected to transport water and sediment and yet maintain habitat and aesthetics consistent with unimpaired stream segments, or reaches. Regression relations for bankfull stream characteristics based on drainage area, referred to as 'regional curves,' are used in natural stream channel design to verify field determinations of bankfull discharge and stream channel characteristics. One-variable, ordinary least-squares regressions relating bankfull discharge, bankfull cross-sectional area, bankfull width, bankfull mean depth, and bankfull slope to drainage area were developed on the basis of data collected at 17 streamflow-gaging stations in rural areas with less than 20 percent urban land cover within the basin area (non-urban areas) of the Piedmont Physiographic Province in Virginia. These regional curves can be used to estimate the bankfull discharge and bankfull channel geometry when the drainage area of a watershed is known. Data collected included bankfull cross-sectional geometry, flood-plain geometry, and longitudinal profile data. In addition, particle-size distributions of streambed material were determined, and data on basin characteristics were compiled for each reach. Field data were analyzed to determine bankfull cross-sectional area, bankfull width, bankfull mean depth, bankfull discharge, bankfull channel slope, and D50 and D84 particle sizes at each site. The bankfull geometry from the 17 sites surveyed during this study represents the average of two riffle cross sections for each site. Regional curves developed for the 17 sites had coefficient of determination (R2) values of 0.950 for bankfull cross-sectional area, 0.913 for bankfull width, 0.915 for bankfull mean depth, 0.949 for bankfull discharge, and 0.497 for bankfull channel slope. The regional curves represent conditions for streams with defined channels and bankfull

Circular RNA biogenesis can proceed through an exon-containing lariat precursor.

PubMed

Barrett, Steven P; Wang, Peter L; Salzman, Julia

2015-06-09

Pervasive expression of circular RNA is a recently discovered feature of eukaryotic gene expression programs, yet its function remains largely unknown. The presumed biogenesis of these RNAs involves a non-canonical 'backsplicing' event. Recent studies in mammalian cell culture posit that backsplicing is facilitated by inverted repeats flanking the circularized exon(s). Although such sequence elements are common in mammals, they are rare in lower eukaryotes, making current models insufficient to describe circularization. Through systematic splice site mutagenesis and the identification of splicing intermediates, we show that circular RNA in Schizosaccharomyces pombe is generated through an exon-containing lariat precursor. Furthermore, we have performed high-throughput and comprehensive mutagenesis of a circle-forming exon, which enabled us to discover a systematic effect of exon length on RNA circularization. Our results uncover a mechanism for circular RNA biogenesis that may account for circularization in genes that lack noticeable flanking intronic secondary structure.

Validation of a stream and riparian habitat assessment protocol using stream salamanders in the southwest Virginia coalfields

USGS Publications Warehouse

Sweeten, Sara E.; Ford, W. Mark

2016-01-01

Within the central Appalachia Coalfields, the aquatic impacts of large-scale land uses, such as surface mining, are of particular ecological concern. Identification and quantification of land use impacts to aquatic ecosystems are a necessary first step to aid in mitigation of negative consequences to biota. However, quantifying physical environmental quality such as stream and riparian habitat often can be quite difficult, particularly when there is time or fiscal limitations. As such, standard protocols such as the U.S. EPA’s Stream Habitat Rapid Bioassessment Protocol have been established to be cost- and time-effective. This protocol estimates ten different stream and riparian conditions on a scale of 0 to 20. Unfortunately, using estimations can be problematic because of large potential variation in the scoring depending on differences in training, experience, and opinion of the personnel doing the estimations. In order to help negate these biases and provide a simplified process, the U.S. Army Corps of Engineers (USACE) developed a functional assessment for streams that measures 11 stream and riparian variables along with watershed land use to calculate three different scores, a hydrology score, biogeochemical score, and habitat score. In our study, we examined the correlation of stream salamander presence and abundance to the three USACE scores. In the summer of 2013, we visited 70 sites in the southwest Virginia Coalfields multiple times to collect salamanders and quantify stream and riparian microhabitat parameters. Using occupancy and abundance analyses, we found strong relationships among three Desmognathus spp. and the USACE Habitat FCI score. Accordingly, the Habitat FCI score provides a reasonable assessment of physical instream and riparian conditions that may serve as a surrogate for understanding the community composition and integrity of aquatic salamander in the region.

Quantifying Stream-Aquifer Exchanges Over Scales: the Concept of Nested Interfaces

NASA Astrophysics Data System (ADS)

Flipo, N.; Mouhri, A.; Labarthe, B.; Saleh, F. S.

2013-12-01

Recent developments in hydrological modelling are based on a view of the interface being a single continuum through which water flows. These coupled hydrological-hydrogeological models, emphasizing the importance of the stream-aquifer interface (SAI), are more and more used in hydrological sciences for pluri-disciplinary studies aiming at questioning environmental issues. This notion of a single continuum comes from the historical modelling of hydrosystems based on the hypothesis of a homogeneous media that led to the Darcy law. Nowadays, there is a need to first bridge the gap between hydrological and eco-hydrological views of the SAIs, and, second, to rationalize the modelling of SAI within a consistent framework that fully takes into account the multi-dimensionality of the SAIs. We first define the concept of nested SAIs as a key transitional component of continental hydrosystem. We then demonstrate the usefulness of the concept for the multi-dimensional study of the SAI, with a special emphasis on the stream network which is identified as the key component for scaling hydrological processes occurring at the interface. Finally we focus on SAI modelling at various scales with up-to-date methodologies and give some guidance for the multi-dimensional modelling of the interface using the innovative methodology MIM (Measurements-Interpolation-Modelling), which is graphically developed. MIM scales in space three pools of methods needed to fully understand SAIs. The outcome of MIM is the localization in space of the type of SAI that can be studied by a given approach. The efficiency of the method is illustrated from the local (approx. 1m) to the regional scale (> 10 000 km2) with two examples from the Paris basin (France). The first one consists in the implementation of a sampling system of stream-aquifer exchanges, which is coupled with local 2D thermo-hydro models and a pseudo 3D hydro(geo)logical model at the watershed scale (40 km2). The quantification of monthly

LED downlights with non-circular spots

NASA Astrophysics Data System (ADS)

Parkyn, William A.; Pelka, David G.

2005-09-01

The ubiquitous downlight inhabits our ceilings by the millions. Hot, inefficient, and electrically wasteful, it is next in line for replacement by the latest high-brightness, high-efficacy white LEDs. The conventional downlight configuration of a large incandescent spotlight in a low-cost, ceiling-recessed metal can, represents the culmination of old technology, fated never to improve significantly. Incandescent downlights add greatly both to direct and indirect electrical consumption, with the lamps requiring relatively frequent replacement. The small size of LED emitters means small optical elements can produce much higher-quality beams than incandescent spotlight-lamps can produce. Herein we introduce compact high-luminosity LED downlights with lenses that deliver uniform illumination to delimited targets such as tables. One version utilizes circular lenses and micro-diffuser films to deliver square outputs. The other uses lenses cut to the target shape. In particular, one of these lenses is the first to offer a semicircular spot suitable for gambling tables.

2. Northwest circular bastion, seen from edge of southwest circular ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

2. Northwest circular bastion, seen from edge of southwest circular bastion wall. Metal roof beams extend up to form peak. World War II gun installation at right. - Fort Hamilton, Northwest Circular Bastion, Rose Island, Newport, Newport County, RI

Prevention of Bridge Scour with Non-uniform Circular Piers Plane under Steady Flows

NASA Astrophysics Data System (ADS)

Chen, Hsing-Ting; Wang, Chuan-Yi

2017-04-01

River bed scour and deposit variation extremely severe because of most of rivers are steep and rapid flows, and river discharge extremely unstable and highly unsteady during different seasons in Taiwan. In addition to the obstruction of piers foundation, it causes local scour and threatens the safety of bridges. In the past, riprap, wire gabion or wrap pier works were adopted as the protections of piers foundation, but there were no effectual outcomes. The events of break off piers still happen sometimes. For example, typhoon Kalmaegi (2008) and Morakot (2009) caused heavy damages on Ho-Fon bridge in the Da-jia river and Shuang-Yuan bridge in the Kao-Ping river, respectively. Accordingly, to understand the piers scour system and propose an appropriate protection of piers foundation becomes an important topic for this study currently. This research improves the protection works of the existing uniform bridge pier (diameter D) to ensure the safety of the bridge. The non-uniform plane of circular piers (diameter D*) are placed on the top of a bridge pier foundation to reduce the down flow impacting energy and scour by its' surface roughness characteristics. This study utilize hydraulic models to simulate local scour depth and scour depth change with time for non-uniform pier diameter ratio D/D* of 0.3,0.4,0.5,0.6,0.7 and 0.8, and different type pier and initial bed level (Y) relative under the foundation top elevation under steady flows of V/Vc=0.95,0.80 and 0.65. The research results show that the scour depth increases with an increase of flow intensity (V/Vc) under different types of steady flow hydrographs. The scour depth decreases with increase of initial bed level (Y=+0.2D*,0D*and -0.2D*) relative under the foundation top elevation of the different type pier. The maximum scour depth occurred in the front of the pier for all conditions. Because of the scouring retardation by the non-uniform plane of foundation, the scour depth is reduced for the un-exposed bridge

Forestry best management practices and sediment control at skidder stream crossings

Treesearch

Laura R. Wear; W. Michael Aust; M. Chad Bolding; Brian D. Strahm; Andrew C. Dolloff

2015-01-01

Stream crossings for skid trails have high sediment delivery ratios. Forestry Best Management Practices (BMPs) have proven to be effective for erosion control, but few studies have quantified the impact of various levels of BMPs on sedimentation. In this study, three skid-trail stream-crossing BMP treatments were installed on nine operational stream crossings (three...

Stabilization of benthic algal biomass in a temperate stream draining agroecosystems.

PubMed

Ford, William I; Fox, James F

2017-01-01

Results of the present study quantified carbon sequestration due to algal stabilization in low order streams, which has not been considered previously in carbon stream ecosystem studies. The authors used empirical mode decomposition of an 8-year carbon elemental and isotope dataset to quantify carbon accrual and fingerprint carbon derived from algal stabilization. The authors then applied a calibrated, process-based stream carbon model (ISOFLOC) that elicits further evidence of algal stabilization. Data and modeling results suggested that processes of shielding and burial during an extreme hydrologic event enhance algal stabilization. Given that previous studies assumed stream algae are turned over or sloughed downstream, the authors performed scenario simulations of the calibrated model in order to assess how changing environmental conditions might impact algae stabilization within the stream. Results from modeling scenarios showed an increase in algal stabilization as mean annual water temperature increases ranging from 0 to 0.04 tC km -2  °C -1 for the study watershed. The dependence of algal stabilization on temperature highlighted the importance of accounting for benthic fate of carbon in streams under projected warming scenarios. This finding contradicts the evolving paradigm that net efflux of CO 2 from streams increases with increasing temperatures. Results also quantified sloughed algae that is transported and potentially stabilized downstream and showed that benthos-derived sloughed algae was on the same order of magnitude, and at times greater, than phytoplankton within downstream water bodies. Copyright © 2016 Elsevier Ltd. All rights reserved.

Heat as a tool for studying the movement of ground water near streams

USGS Publications Warehouse

Stonestrom, David A.; Constantz, Jim

2003-01-01

and practical constraints. As an alternative, naturally occurring variations in temperature can be used to track (or trace) the heat carried by flowing water. The hydraulic transport of heat enables its use as a tracer. Differences between temperatures in the stream and surrounding sediments are now being analyzed to trace the movement of ground water to and from streams. As shown in the subsequent chapters of this circular, tracing the transport of heat leads to a better understanding of the magnitudes and mechanisms of stream/ground-water exchanges, and helps quantify the resulting effects on stream and streambed temperatures. Chapter 1 describes the general principals and procedures by which the natural transport of heat can be utilized to infer the movement of subsurface water near streams. This information sets the foundation for understanding the advanced applications in chapters 2 through 8. Each of these chapters provides a case study, using heat tracing as a tool, of interactions between surface water and ground water for a different location in the western United States. Technical details of the use of heat as an environmental tracer appear in appendices.

A Watershed-Scale Survey for Stream-Foraging Birds in Northern California

Treesearch

Sherri L. Miller; C. John Ralph

2005-01-01

Our objective was to develop a survey technique and watershed-scale design to monitor trends of population size and habitat associations in stream-foraging birds. The resulting methods and design will be used to examine the efficacy of quantifying the association of stream and watershed quality with bird abundance. We surveyed 60 randomly selected 2-km stream reaches...

Comprehensive circular RNA profiling reveals that circular RNA100783 is involved in chronic CD28-associated CD8(+)T cell ageing.

PubMed

Wang, Yu-Hong; Yu, Xu-Hui; Luo, Shan-Shun; Han, Hui

2015-01-01

Ageing brings about the gradual deterioration of the immune system, also known as immunosenescence. The role of non-coding circular RNA in immunosenescence is under studied. Using circular RNA microarray data, we assembled Comparison groups (C1, C2, C3 and C4) that allowed us to compare the circular RNA expression profiles between CD28(+)CD8(+) T cells and CD28(-)CD8(+) T cells isolated from healthy elderly or adult control subjects. Using a step-wise biomathematical strategy, the differentially-expressed circRNAs were identified in C1 (CD28(+)CD8(+) vs CD28(-)CD8(+)T cells in the elderly) and C4 (CD28(-)CD8(+)T cells in the elderly vs in the adult), and the commonly-expressed circRNA species from these profiles were optimized as immunosenescence biomarkers. Four overlapping upregulated circular RNAs (100550, 100783, 101328 and 102592) expressed in cross-comparison between C1 and C4 were validated using quantitative polymerase chain reaction. Of these, only circular RNA100783 exhibited significant validation. None of the down-regulated circular RNAs were expressed in the C1 and the C4 cross-comparisons. Therefore, we further predicted circular RNA100783-targeted miRNA-gene interactions using online DAVID annotation. The analysis revealed that a circular RNA100783-targeted miRNA-mRNA network may be involved in alternative splicing, the production of splice variants, and in the regulation of phosphoprotein expression. Considering the hypothesis of splicing-related biogenesis of circRNAs, we propose that circular RNA100783 may play a role in phosphoprotein-associated functions duringCD28-related CD8(+) T cell ageing. This study is the first to employ circular RNA profiling to investigate circular RNA-micro RNA interactions in ageing human CD8(+)T cell populations and the accompanying loss of CD28 expression. The overlapping expression of circular RNA100783 may represent a novel biomarker for the longitudinal tracking ofCD28-related CD8(+) T cell ageing and global

Circular RNA biogenesis can proceed through an exon-containing lariat precursor

PubMed Central

Barrett, Steven P; Wang, Peter L; Salzman, Julia

2015-01-01

Pervasive expression of circular RNA is a recently discovered feature of eukaryotic gene expression programs, yet its function remains largely unknown. The presumed biogenesis of these RNAs involves a non-canonical ‘backsplicing’ event. Recent studies in mammalian cell culture posit that backsplicing is facilitated by inverted repeats flanking the circularized exon(s). Although such sequence elements are common in mammals, they are rare in lower eukaryotes, making current models insufficient to describe circularization. Through systematic splice site mutagenesis and the identification of splicing intermediates, we show that circular RNA in Schizosaccharomyces pombe is generated through an exon-containing lariat precursor. Furthermore, we have performed high-throughput and comprehensive mutagenesis of a circle-forming exon, which enabled us to discover a systematic effect of exon length on RNA circularization. Our results uncover a mechanism for circular RNA biogenesis that may account for circularization in genes that lack noticeable flanking intronic secondary structure. DOI: http://dx.doi.org/10.7554/eLife.07540.001 PMID:26057830

NON-NAVIGABLE STREAMS AND ADJACENT WETLANDS: ADDRESSING SCIENCE NEEDS FOLLOWING THE SUPREME COURT'S RAPANOS DECISION

EPA Science Inventory

In June of 2006, the US Supreme Court ruled in two cases concerning jurisdiction under the Clean Water Act (CWA). The decisions suggest that hydrological permanence of non-navigable streams and adjacent wetlands (NNSAWs) and their effects on the chemical, physical, and biological...

OpenCFU, a new free and open-source software to count cell colonies and other circular objects.

PubMed

Geissmann, Quentin

2013-01-01

Counting circular objects such as cell colonies is an important source of information for biologists. Although this task is often time-consuming and subjective, it is still predominantly performed manually. The aim of the present work is to provide a new tool to enumerate circular objects from digital pictures and video streams. Here, I demonstrate that the created program, OpenCFU, is very robust, accurate and fast. In addition, it provides control over the processing parameters and is implemented in an intuitive and modern interface. OpenCFU is a cross-platform and open-source software freely available at http://opencfu.sourceforge.net.

Variability of pesticide exposure in a stream mesocosm system: macrophyte-dominated vs. non-vegetated sections.

PubMed

Beketov, Mikhail A; Liess, Matthias

2008-12-01

For flowing water bodies no information is available about patterns of contaminant distribution in flowing water compared to macrophyte-dominated structures. The aim of the study was to examine temporal dynamic and spatial cross-channel variability of pulse exposure of the insecticide thiacloprid in outdoor stream mesocosms. Two distinct cross-channel sections have been considered: macrophyte-dominated littoral and non-vegetated midstream. Median disappearance time ranged from 17 to 43 h (water phase, midstream). We showed that during the exposure pulse (10h) thiacloprid concentrations in the macrophyte-dominated section were 20-60% lower than those in the non-vegetated section. This suggests that spatial variability in contaminant concentrations, particularly in streams containing macrophytes, should be taken into account to enable a more realistic assessment of (i) exposure and associated effects and (ii) mass transport of pesticides and other chemicals into river systems (e.g. losses with surface runoff).

A Review of Major Non-Power-Related Carbon Dioxide Stream Compositions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Last, George V.; Schmick, Mary T.

A critical component in the assessment of long-term risk from geologic sequestration of carbon dioxide (CO2) is the ability to predict mineralogical and geochemical changes within storage reservoirs as a result of rock-brine-CO2 reactions. Impurities and/or other constituents in CO2 source streams selected for sequestration can affect both the chemical and physical (e.g., density, viscosity, interfacial tension) properties of CO2 in the deep subsurface. The nature and concentrations of these impurities are a function of both the industrial source(s) of CO2, as well as the carbon capture technology used to extract the CO2 and produce a concentrated stream for subsurfacemore » injection and geologic sequestration. This article reviews the relative concentrations of CO2 and other constituents in exhaust gases from major non-energy-related industrial sources of CO2. Assuming that carbon capture technology would remove most of the incondensable gases N2, O2, and Ar, leaving SO2 and NOx as the main impurities, the authors then summarize the relative proportions of the remaining impurities assumed to be present in CO2 source streams that could be targeted for geologic sequestration. The summary is presented relative to five potential sources of CO2: 1) Flue Gas with Flue Gas Desulfurization, 2) Combustion Stack from Coke Production, 3) Portland Cement Kilns, 4) Natural Gas Combustion, and 5) Lime Production.« less

Circular economy and waste to energy

NASA Astrophysics Data System (ADS)

Rada, E. C.; Ragazzi, M.; Torretta, V.; Castagna, G.; Adami, L.; Cioca, L. I.

2018-05-01

Waste management in European Union has long being regulated by the 4Rs principle, i.e. reduction, reuse, recycling, recovery, with landfill disposal as the last option. This vision recently led the European Union (especially since 2015) to the introduction of virtuous goals based on the rejection of linear economy in favour of circular economy strongly founded on materials recovery. In this scenario, landfill disposal option will disappear, while energy recovery may appear controversial when not applied to biogas production from anaerobic digestion. The present work aims to analyse the effects that circular economy principles introduced in the European Union context will have on the thermochemical waste treatment plants design. Results demonstrate that indirect combustion (gasification + combustion) along with integrated vitrification of the non-combustible fraction of treated waste will have a more relevant role in the field of waste treatment than in the past, thanks to the compliance of this option with the principles of circular economy.

The SAMI Galaxy Survey: gas streaming and dynamical M/L in rotationally supported systems

NASA Astrophysics Data System (ADS)

Cecil, G.; Fogarty, L. M. R.; Richards, S.; Bland-Hawthorn, J.; Lange, R.; Moffett, A.; Catinella, B.; Cortese, L.; Ho, I.-T.; Taylor, E. N.; Bryant, J. J.; Allen, J. T.; Sweet, S. M.; Croom, S. M.; Driver, S. P.; Goodwin, M.; Kelvin, L.; Green, A. W.; Konstantopoulos, I. S.; Owers, M. S.; Lawrence, J. S.; Lorente, N. P. F.

2016-02-01

Line-of-sight velocities of gas and stars can constrain dark matter (DM) within rotationally supported galaxies if they trace circular orbits extensively. Photometric asymmetries may signify non-circular motions, requiring spectra with dense spatial coverage. Our integral-field spectroscopy of 178 galaxies spanned the mass range of the Sydney-AAO Multi-object integral field spectrograph (SAMI) Galaxy Survey. We derived circular speed curves (CSCs) of gas and stars from non-parametric fits out to r ˜ 2re. For 12/14 with measured H I profiles, ionized gas and H I maximum velocities agreed. We fitted mass-follows-light models to 163 galaxies by approximating the radial light profile as nested, very flattened mass homeoids viewed as a Sérsic form. Fitting broad-band spectral energy distributions to Sloan Digital Sky Survey images gave median stellar mass/light 1.7 assuming a Kroupa initial mass function (IMF) versus 2.6 dynamically. Two-thirds of the dynamical mass/light measures were consistent with star+remnant IMFs. One-fifth required upscaled starlight to fit, hence comparable mass of unobserved baryons and/or DM distributed like starlight across the SAMI aperture that came to dominate motions as the starlight CSCs declined rapidly. The rest had mass distributed differently from light. Subtracting fits of Sérsic radial profiles to 13 VIKING Z-band images revealed residual weak bars. Near the bar major axis, we assessed m = 2 streaming velocities, and found deviations usually <30 km s-1 from the CSC; three showed no deviation. Thus, asymmetries rarely influenced the CSC despite colocated shock-indicating, emission-line flux ratios in more than 2/3 of our sample.

Circular free-electron laser

DOEpatents

Brau, Charles A.; Kurnit, Norman A.; Cooper, Richard K.

1984-01-01

A high efficiency, free electron laser utilizing a circular relativistic electron beam accelerator and a circular whispering mode optical waveguide for guiding optical energy in a circular path in the circular relativistic electron beam accelerator such that the circular relativistic electron beam and the optical energy are spatially contiguous in a resonant condition for free electron laser operation. Both a betatron and synchrotron are disclosed for use in the present invention. A free electron laser wiggler is disposed around the circular relativistic electron beam accelerator for generating a periodic magnetic field to transform energy from the circular relativistic electron beam to optical energy.

Non-intrusive investigation of flow and heat transfer characteristics of a channel with a built-in circular cylinder

NASA Astrophysics Data System (ADS)

Vyas, Apoorv; Mishra, Biswajit; Agrawal, Atul; Srivastava, Atul

2018-03-01

Interferometry-based experimental investigation of heat transfer phenomena associated with a channel fitted with a circular cylinder has been reported. Experiments have been performed with water as the working fluid, and the range of Reynolds number considered is 75 ≤ Re ≤ 165. The circular cylinder, placed at the inlet section of the channel, provides a blockage ratio of 0.5. The experimental methodology has been benchmarked against the results of transient numerical simulations. In order to assess the performance of the channel fitted with a circular cylinder for possible heat transfer enhancement from the channel wall(s), experiments have also been performed on a plane channel (without a cylinder). The interferometry-based experiments clearly highlighted the influence of the built-in cylinder in generating the flow instabilities and alterations in the thermal boundary layer profile along the heated wall of the channel. The phenomenon of vortex shedding behind the cylinder was successfully captured. A gradual increase in the vortex shedding frequency was observed with increasing Reynolds number. Quantitative data in the form of two-dimensional temperature distributions revealed an increase in the strength of wall thermal gradients in the wake region of the cylinder due to the periodic shedding of the vortices. In turn, a clear enhancement in the wall heat transfer rates was observed for the case of the channel fitted with a cylinder vis-à-vis the plane channel. To the best of the knowledge of the authors, the work reported is one of the first attempts to provide the planar field experimental data for a channel configuration with a built-in circular cylinder using non-intrusive imaging techniques and has the potential to serve as one of the benchmark studies for validating the existing as well as future numerical studies in the related area.

Agricultural land use alters the seasonality and magnitude of stream metabolism

EPA Science Inventory

Streams are active processors of organic carbon; however, spatial and temporal variation in the rates and controls on metabolism are not well quantified in streams draining intensively-farmed landscapes. We present a comprehensive dataset of gross primary production (GPP) and ec...

Analyzing indicators of stream health for Minnesota streams

USGS Publications Warehouse

Singh, U.; Kocian, M.; Wilson, B.; Bolton, A.; Nieber, J.; Vondracek, B.; Perry, J.; Magner, J.

2005-01-01

Recent research has emphasized the importance of using physical, chemical, and biological indicators of stream health for diagnosing impaired watersheds and their receiving water bodies. A multidisciplinary team at the University of Minnesota is carrying out research to develop a stream classification system for Total Maximum Daily Load (TMDL) assessment. Funding for this research is provided by the United States Environmental Protection Agency and the Minnesota Pollution Control Agency. One objective of the research study involves investigating the relationships between indicators of stream health and localized stream characteristics. Measured data from Minnesota streams collected by various government and non-government agencies and research institutions have been obtained for the research study. Innovative Geographic Information Systems tools developed by the Environmental Science Research Institute and the University of Texas are being utilized to combine and organize the data. Simple linear relationships between index of biological integrity (IBI) and channel slope, two-year stream flow, and drainage area are presented for the Redwood River and the Snake River Basins. Results suggest that more rigorous techniques are needed to successfully capture trends in IBI scores. Additional analyses will be done using multiple regression, principal component analysis, and clustering techniques. Uncovering key independent variables and understanding how they fit together to influence stream health are critical in the development of a stream classification for TMDL assessment.

Effectiveness of best management practices for sediment reduction at operation forest stream crossings

Treesearch

Laura R. Wear; Michael W. Aust; M. Chad Bolding; Brian D. Strahm; C. Andrew Dolloff

2013-01-01

Temporary skid trail stream crossings have repeatedly been identified as having considerable potential to introduce sediment to streams. Forestry Best Management Practices (BMPs) have proven to be effective for controlling erosion and subsequent sedimentation, yet few studies have quantified sedimentation associated with various levels of BMPs for skidder stream...

Circular dichroism measurements at an x-ray free-electron laser with polarization control

NASA Astrophysics Data System (ADS)

Hartmann, G.; Lindahl, A. O.; Knie, A.; Hartmann, N.; Lutman, A. A.; MacArthur, J. P.; Shevchuk, I.; Buck, J.; Galler, A.; Glownia, J. M.; Helml, W.; Huang, Z.; Kabachnik, N. M.; Kazansky, A. K.; Liu, J.; Marinelli, A.; Mazza, T.; Nuhn, H.-D.; Walter, P.; Viefhaus, J.; Meyer, M.; Moeller, S.; Coffee, R. N.; Ilchen, M.

2016-08-01

A non-destructive diagnostic method for the characterization of circularly polarized, ultraintense, short wavelength free-electron laser (FEL) light is presented. The recently installed Delta undulator at the LCLS (Linac Coherent Light Source) at SLAC National Accelerator Laboratory (USA) was used as showcase for this diagnostic scheme. By applying a combined two-color, multi-photon experiment with polarization control, the degree of circular polarization of the Delta undulator has been determined. Towards this goal, an oriented electronic state in the continuum was created by non-resonant ionization of the O2 1s core shell with circularly polarized FEL pulses at hν ≃ 700 eV. An also circularly polarized, highly intense UV laser pulse with hν ≃ 3.1 eV was temporally and spatially overlapped, causing the photoelectrons to redistribute into so-called sidebands that are energetically separated by the photon energy of the UV laser. By determining the circular dichroism of these redistributed electrons using angle resolving electron spectroscopy and modeling the results with the strong-field approximation, this scheme allows to unambiguously determine the absolute degree of circular polarization of any pulsed, ultraintense XUV or X-ray laser source.

Water Chemistry of Ephemeral Streams

Treesearch

J.L. Michael; W.P. Fowler; H.L. Gibbs; J.B. Fischer

1994-01-01

Four individual, but related, studies are currently being conducted to determine the effects of clearcut and seed tree reproduction cutting methods on stream chemistry, sedimentation, and bedload movement by monitoring herbicide and nutrient movement in stemflow, overland flow, streamflow, and zonal subsurface flow. Sediment movement is being quantified for...

Evaluation of simplified stream-aquifer depletion models for water rights administration

USGS Publications Warehouse

Sophocleous, Marios; Koussis, Antonis; Martin, J.L.; Perkins, S.P.

1995-01-01

We assess the predictive accuracy of Glover's (1974) stream-aquifer analytical solutions, which are commonly used in administering water rights, and evaluate the impact of the assumed idealizations on administrative and management decisions. To achieve these objectives, we evaluate the predictive capabilities of the Glover stream-aquifer depletion model against the MODFLOW numerical standard, which, unlike the analytical model, can handle increasing hydrogeologic complexity. We rank-order and quantify the relative importance of the various assumptions on which the analytical model is based, the three most important being: (1) streambed clogging as quantified by streambed-aquifer hydraulic conductivity contrast; (2) degree of stream partial penetration; and (3) aquifer heterogeneity. These three factors relate directly to the multidimensional nature of the aquifer flow conditions. From these considerations, future efforts to reduce the uncertainty in stream depletion-related administrative decisions should primarily address these three factors in characterizing the stream-aquifer process. We also investigate the impact of progressively coarser model grid size on numerically estimating stream leakage and conclude that grid size effects are relatively minor. Therefore, when modeling is required, coarser model grids could be used thus minimizing the input data requirements.

Probe systems for static pressure and cross-stream turbulence intensity

NASA Technical Reports Server (NTRS)

Rossow, Vernon, J.

1991-01-01

A recent study of total-pressure probes for use in highly turbulent streams is extended herein by developing probe systems that measure time-averaged static or ambient pressure and turbulence intensity. Arrangements of tubular probes of circular and elliptical cross section are described that measure the pressure at orifices on the sides of the probes to obtain different responses to the cross-stream velocity fluctuations. When the measured data are combined to remove the effect of the presence of the probes on the local pressure, the time-averaged static pressure and the cross-stream components of turbulence intensity can be determined. If a system of total pressure tubes, as described in an accompanying paper, is added to the static pressure group to form a single cluster, redundant measurements are obtained that permit accuracy and consistency checks.

A statistical method to predict flow permanence in dryland streams from time series of stream temperature

USGS Publications Warehouse

Arismendi, Ivan; Dunham, Jason B.; Heck, Michael; Schultz, Luke; Hockman-Wert, David

2017-01-01

Intermittent and ephemeral streams represent more than half of the length of the global river network. Dryland freshwater ecosystems are especially vulnerable to changes in human-related water uses as well as shifts in terrestrial climates. Yet, the description and quantification of patterns of flow permanence in these systems is challenging mostly due to difficulties in instrumentation. Here, we took advantage of existing stream temperature datasets in dryland streams in the northwest Great Basin desert, USA, to extract critical information on climate-sensitive patterns of flow permanence. We used a signal detection technique, Hidden Markov Models (HMMs), to extract information from daily time series of stream temperature to diagnose patterns of stream drying. Specifically, we applied HMMs to time series of daily standard deviation (SD) of stream temperature (i.e., dry stream channels typically display highly variable daily temperature records compared to wet stream channels) between April and August (2015–2016). We used information from paired stream and air temperature data loggers as well as co-located stream temperature data loggers with electrical resistors as confirmatory sources of the timing of stream drying. We expanded our approach to an entire stream network to illustrate the utility of the method to detect patterns of flow permanence over a broader spatial extent. We successfully identified and separated signals characteristic of wet and dry stream conditions and their shifts over time. Most of our study sites within the entire stream network exhibited a single state over the entire season (80%), but a portion of them showed one or more shifts among states (17%). We provide recommendations to use this approach based on a series of simple steps. Our findings illustrate a successful method that can be used to rigorously quantify flow permanence regimes in streams using existing records of stream temperature.

Evaluating the Effects of Culvert Designs on Ecosystem Processes in Northern Wisconsin Streams

Treesearch

J. C. Olson; A. M. Marcarelli; A.L. Timm; S.L. Eggert; R.K. Kolka

2017-01-01

Culvert replacements are commonly undertaken to restore aquatic organism passage and stream hydrologic and geomorphic conditions, but their effects on ecosystem processes are rarely quantified. The objective of this study was to investigate the effects of two culvert replacement designs on stream ecosystem processes. The stream simulation design, where culverts...

FIELD OPERATIONS AND METHODS FOR MEASURING THE ECOLOGICAL CONDITION OF NON-WADEABLE RIVERS AND STREAMS

EPA Science Inventory

The methods and instructions for field operations presented in this manual for surveys of non-wadeable streams and rivers were developed and tested based on 55 sample sites in the Mid-Atlantic region and 53 sites in an Oregon study during two years of pilot and demonstration proj...

Importance of terrestrial arthropods as subsidies in lowland Neotropical rain forest stream ecosystems

USGS Publications Warehouse

Small, Gaston E.; Torres, Pedro J.; Schwizer, Lauren M.; Duff, John H.; Pringle, Catherine M.

2013-01-01

The importance of terrestrial arthropods has been documented in temperate stream ecosystems, but little is known about the magnitude of these inputs in tropical streams. Terrestrial arthropods falling from the canopy of tropical forests may be an important subsidy to tropical stream food webs and could also represent an important flux of nitrogen (N) and phosphorus (P) in nutrient-poor headwater streams. We quantified input rates of terrestrial insects in eight streams draining lowland tropical wet forest in Costa Rica. In two focal headwater streams, we also measured capture efficiency by the fish assemblage and quantified terrestrially derived N- and P-excretion relative to stream nutrient uptake rates. Average input rates of terrestrial insects ranged from 5 to 41 mg dry mass/m2/d, exceeding previous measurements of aquatic invertebrate secondary production in these study streams, and were relatively consistent year-round, in contrast to values reported in temperate streams. Terrestrial insects accounted for half of the diet of the dominant fish species, Priapicthys annectens. Although terrestrially derived fish excretion was found to be a small flux relative to measured nutrient uptake rates in the focal streams, the efficient capture and processing of terrestrial arthropods by fish made these nutrients available to the local stream ecosystem. This aquatic-terrestrial linkage is likely being decoupled by deforestation in many tropical regions, with largely unknown but potentially important ecological consequences.

Simple measures of channel habitat complexity predict transient hydraulic storage in streams

EPA Science Inventory

Stream thalweg depth profiles (along path of greatest channel depth) and woody debris tallies have recently become components of routine field procedures for quantifying physical habitat in national stream monitoring efforts. Mean residual depth, standard deviation of thalweg dep...

Estimating statistical isotropy violation in CMB due to non-circular beam and complex scan in minutes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pant, Nidhi; Das, Santanu; Mitra, Sanjit

Mild, unavoidable deviations from circular-symmetry of instrumental beams along with scan strategy can give rise to measurable Statistical Isotropy (SI) violation in Cosmic Microwave Background (CMB) experiments. If not accounted properly, this spurious signal can complicate the extraction of other SI violation signals (if any) in the data. However, estimation of this effect through exact numerical simulation is computationally intensive and time consuming. A generalized analytical formalism not only provides a quick way of estimating this signal, but also gives a detailed understanding connecting the leading beam anisotropy components to a measurable BipoSH characterisation of SI violation. In this paper,more » we provide an approximate generic analytical method for estimating the SI violation generated due to a non-circular (NC) beam and arbitrary scan strategy, in terms of the Bipolar Spherical Harmonic (BipoSH) spectra. Our analytical method can predict almost all the features introduced by a NC beam in a complex scan and thus reduces the need for extensive numerical simulation worth tens of thousands of CPU hours into minutes long calculations. As an illustrative example, we use WMAP beams and scanning strategy to demonstrate the easability, usability and efficiency of our method. We test all our analytical results against that from exact numerical simulations.« less

OpenCFU, a New Free and Open-Source Software to Count Cell Colonies and Other Circular Objects

PubMed Central

Geissmann, Quentin

2013-01-01

Counting circular objects such as cell colonies is an important source of information for biologists. Although this task is often time-consuming and subjective, it is still predominantly performed manually. The aim of the present work is to provide a new tool to enumerate circular objects from digital pictures and video streams. Here, I demonstrate that the created program, OpenCFU, is very robust, accurate and fast. In addition, it provides control over the processing parameters and is implemented in an intuitive and modern interface. OpenCFU is a cross-platform and open-source software freely available at http://opencfu.sourceforge.net. PMID:23457446

Sediment deposition from forest roads at stream crossings as influenced by road characteristics

Treesearch

A.J. Lang; W.M. Aust; M.C. Bolding; K.J. McGuire

2015-01-01

Recent controversies associated with ditched forest roads and stream crossings in the Pacific Northwest have focused national attention on sediment production and best management practices (BMPs) at stream crossings. Few studies have quantified soil erosion rates at stream crossings as influenced by road characteristics and compared them to modeled rates. Soil erosion...

Quantifying ratios of suspended sediment sources in forested headwater streams following timber-harvesting operations

NASA Astrophysics Data System (ADS)

Rachels, A. A.; Bladon, K. D.; Bywater-Reyes, S.

2017-12-01

Historically, timber-harvesting has increased fine sediment inputs to streams due to increased hillslope and streambank erosion and mass wasting along roads. However, under modern best management practices, the relative importance and variability of these sources is poorly understood. We present preliminary results from an ongoing study investigating the primary sources of suspended sediment in Oregon Coast Range streams influenced by timber harvesting. We instrumented two catchments, Enos Creek (harvested 2016) and Scheele Creek (reference) in fall 2016. Phillips samplers (5-6 per catchment) have been deployed longitudinally down the streams to enable robust characterization of suspended sediments—the collected samples integrate the chemical signatures of upstream sediment exports. We will collect samples monthly over 2 wet seasons and return to the laboratory to analyze the sediment using source fingerprinting approaches. The fingerprinting technique compares the chemical properties of stream sediment samples with the chemical properties of potential source areas, including 1) roads, 2) stream banks, and 3) hillslopes. To design a robust model for sediment-source identification, different types of chemical data are required—we will analyze sediment samples using a combination of: a) stable isotopes and C/N ratios (i.e., δ15N, δ13C, and C/N), b) geochemistry (Fe, K, and Ca), and c) radiogenic isotopes (137Cs and 210Pb). At the harvested site, the C/N ratios of the streambanks (17.9 ± 3.8) and the hillslopes (26.4 ± 4.8) are significantly different from one another (p = .016). C/N ratios of the suspended sediment (20.5 ± 2.0) are intermediate values between potential endmembers and behave conservatively with transport. The C/N ratios of the suspended sediment appear unaffected by roads (18.9 ± 8.7) along specific sections of the stream, suggesting that roads are not a primary sediment contributor. Under this assumption, the suspended sediment is, on

A field comparison of multiple techniques to quantify groundwater - surface-water interactions

USGS Publications Warehouse

González-Pinzón, Ricardo; Ward, Adam S; Hatch, Christine E; Wlostowski, Adam N; Singha, Kamini; Gooseff, Michael N.; Haggerty, Roy; Harvey, Judson; Cirpka, Olaf A; Brock, James T

2015-01-01

Groundwater–surface-water (GW-SW) interactions in streams are difficult to quantify because of heterogeneity in hydraulic and reactive processes across a range of spatial and temporal scales. The challenge of quantifying these interactions has led to the development of several techniques, from centimeter-scale probes to whole-system tracers, including chemical, thermal, and electrical methods. We co-applied conservative and smart reactive solute-tracer tests, measurement of hydraulic heads, distributed temperature sensing, vertical profiles of solute tracer and temperature in the stream bed, and electrical resistivity imaging in a 450-m reach of a 3rd-order stream. GW-SW interactions were not spatially expansive, but were high in flux through a shallow hyporheic zone surrounding the reach. NaCl and resazurin tracers suggested different surface–subsurface exchange patterns in the upper ⅔ and lower ⅓ of the reach. Subsurface sampling of tracers and vertical thermal profiles quantified relatively high fluxes through a 10- to 20-cm deep hyporheic zone with chemical reactivity of the resazurin tracer indicated at 3-, 6-, and 9-cm sampling depths. Monitoring of hydraulic gradients along transects with MINIPOINT streambed samplers starting ∼40 m from the stream indicated that groundwater discharge prevented development of a larger hyporheic zone, which progressively decreased from the stream thalweg toward the banks. Distributed temperature sensing did not detect extensive inflow of ground water to the stream, and electrical resistivity imaging showed limited large-scale hyporheic exchange. We recommend choosing technique(s) based on: 1) clear definition of the questions to be addressed (physical, biological, or chemical processes), 2) explicit identification of the spatial and temporal scales to be covered and those required to provide an appropriate context for interpretation, and 3) maximizing generation of mechanistic understanding and reducing costs of

Quantifying the effects of stream channels on storm water quality in a semi-arid urban environment

NASA Astrophysics Data System (ADS)

Gallo, Erika L.; Lohse, Kathleen A.; Brooks, Paul D.; McIntosh, Jennifer C.; Meixner, Thomas; McLain, Jean E. T.

2012-11-01

SummaryStormwater drainage systems can have a large effect on urban runoff quality, but it is unclear how ephemeral urban streams alter runoff hydrochemistry. This problem is particularly relevant in semi-arid regions, where urban storm runoff is considered a renewable water resource. Here we address the question: how do stream channels alter urban runoff hydrochemistry? We collected synoptic stormwater samples during three rainfall-runoff events from nine ephemeral streams reaches (three concrete or metal, three grass, three gravel) in Tucson, Arizona. We identified patterns of temporal and spatial (longitudinal) variability in concentrations of conservative (chloride and isotopes of water) and reactive solutes (inorganic-N, soluble reactive phosphorous, sulfate-S, dissolved organic carbon (DOC) and nitrogen, and fecal indicator bacteria). Water isotopes and chloride (Cl) concentrations indicate that solute flushing and evapoconcentration alter temporal patterns in runoff hydrochemistry, but not spatial hydrochemical responses. Solute concentrations and stream channel solute sourcing and retention during runoff were significantly more variable at the grass reaches (CV = 2.3 - 144%) than at the concrete or metal (CV = 1.6 - 107%) or gravel reaches (CV = 1.9 - 60%), which functioned like flow-through systems. Stream channel soil Cl and DOC decreased following a runoff event (Cl: 12.1-7.3 μg g-1 soil; DOC: 87.7-30.1 μg g-1 soil), while soil fecal indicator bacteria counts increased (55-215 CFU g-1 soil). Finding from this study suggest that the characteristics of the ephemeral stream channel substrate control biogeochemical reactions between runoff events, which alter stream channel soil solute stores and the hydrochemistry of subsequent runoff events.

A protocol for the creation of useful geometric shape metrics illustrated with a newly derived geometric measure of leaf circularity.

PubMed

Krieger, Jonathan D

2014-08-01

I present a protocol for creating geometric leaf shape metrics to facilitate widespread application of geometric morphometric methods to leaf shape measurement. • To quantify circularity, I created a novel shape metric in the form of the vector between a circle and a line, termed geometric circularity. Using leaves from 17 fern taxa, I performed a coordinate-point eigenshape analysis to empirically identify patterns of shape covariation. I then compared the geometric circularity metric to the empirically derived shape space and the standard metric, circularity shape factor. • The geometric circularity metric was consistent with empirical patterns of shape covariation and appeared more biologically meaningful than the standard approach, the circularity shape factor. The protocol described here has the potential to make geometric morphometrics more accessible to plant biologists by generalizing the approach to developing synthetic shape metrics based on classic, qualitative shape descriptors.

Supermarkets and unhealthy food marketing: An international comparison of the content of supermarket catalogues/circulars.

PubMed

Charlton, Emma L; Kähkönen, Laila A; Sacks, Gary; Cameron, Adrian J

2015-12-01

Supermarket marketing activities have a major influence on consumer food purchases. This study aimed to assess and compare the contents of supermarket marketing circulars from a range of countries worldwide from an obesity prevention perspective. The contents of supermarket circulars from major supermarket chains in 12 non-random countries were collected and analysed over an eight week period from July to September 2014 (n=89 circulars with 12,563 food products). Circulars were largely English language and from countries representing most continents. Food products in 25 sub-categories were categorised as discretionary or non-discretionary (core) food or drinks based on the Australian Guide to Healthy Eating. The total number of products in each subcategory in the whole circular, and on front covers only, was calculated. Circulars from most countries advertised a high proportion of discretionary foods. The only exceptions were circulars from the Philippines (no discretionary foods) and India (11% discretionary food). Circulars from six countries advertised more discretionary foods than core foods. Front covers tended to include a much greater proportion of healthy products than the circulars overall. Supermarket circulars in most of the countries examined include a high percentage of discretionary foods, and therefore promote unhealthy eating behaviours that contribute to the global obesity epidemic. A clear opportunity exists for supermarket circulars to promote rather than undermine healthy eating behaviours of populations. Governments need to ensure that supermarket marketing is included as part of broader efforts to restrict unhealthy food marketing. Copyright © 2015 Elsevier Inc. All rights reserved.

Absorbed Power Minimization in Cellular Users with Circular Antenna Arrays

NASA Astrophysics Data System (ADS)

Christofilakis, Vasilis; Votis, Constantinos; Tatsis, Giorgos; Raptis, Vasilis; Kostarakis, Panos

2010-01-01

Nowadays electromagnetic pollution of non ionizing radiation generated by cellular phones concerns millions of people. In this paper the use of circular antenna array as a means of minimizing the absorbed power by cellular phone users is introduced. In particular, the different characteristics of radiation patterns produced by a helical conventional antenna used in mobile phones operating at 900 MHz and those produced by a circular antenna array, hypothetically used in the same mobile phones, are in detail examined. Furthermore, the percentage of decrement of the power absorbed in the head as a function of direction of arrival is estimated for the circular antenna array.

Stream Nitrate Concentrations Diverge at Baseflow and Converge During Storms in Watersheds with Contrasting Urbanization

NASA Astrophysics Data System (ADS)

Carey, R. O.; Wollheim, W. M.; Mulukutla, G. K.; Cook, C. S.

2013-12-01

Management of non-point sources is challenging because it requires adequate quantification of non-point fluxes that are highly dynamic over time. Most fluxes occur during storms and are difficult to characterize with grab samples alone in flashy, urban watersheds. Accurate and relatively precise measurements using in situ sensor technology can quantify fluxes continuously, avoiding the uncertainties in extrapolation of infrequently collected grab samples. In situ nitrate (NO3-N) sensors were deployed simultaneously from April to December 2013 in two streams with contrasting urban land uses in an urbanizing New Hampshire watershed (80 km2). Nitrogen non-point fluxes and temporal patterns were evaluated in Beards Creek (forested: 50%; residential: 24%; commercial/institutional/transportation: 7%; agricultural: 6%) and College Brook (forested: 35%; residential: 11%; commercial/institutional/transportation: 20%; agricultural: 17%). Preliminary data indicated NO3-N concentrations in Beards Creek (mean: 0.37 mg/L) were lower than College Brook (mean: 0.60 mg/L), but both streams exhibited rapid increases in NO3-N during the beginning of storms followed by overall dilution. While baseflow NO3-N was greater in College Brook than Beards Creek, NO3-N at the two sites consistently converged during storms. This suggests that standard grab sampling may overestimate fluxes in urban streams, since short-term dilution occurred during periods of highest flow. Analyzing NO3-N flux patterns in smaller urban streams that are directly impacted by watershed activities could help to inform management decisions regarding N source controls, ultimately allowing an assessment of the interactions of climate variability and management actions.

Microhabitat use by brook trout inhabiting small tributaries and a large river main stem: Implications for stream habitat restoration in the central Appalachians

USGS Publications Warehouse

Hansbarger, Jeff L.; Petty, J. Todd; Mazik, Patricia M.

2008-01-01

Brook trout (Salvelinus fontinalis) habitat restoration is needed across a range of stream sizes; however, studies quantifying brook trout habitat preferences in streams of differing sizes are rare. We used radio-telemetry to quantify adult brook trout microhabitat use in a central Appalachian watershed, the upper Shavers Fork of the Cheat River in eastern West Virginia. Our objectives were to: 1) quantify non-random microhabitat use by adult brook trout in the Shavers Fork main stem (drainage area = 32 km2) and an adjacent tributary, Rocky Run (drainage area = 7 km2); and 2) construct stream-specific habitat suitability curves (HSCs) for four important microhabitat variables (depth, average current velocity, maximum current velocity within one meter, and distance to cover). Brook trout used a subset of available microhabitats in both the main stem and Rocky Run: trout tended to occupy microhabitats that were deeper, higher velocity, and closer to cover than expected by chance alone. Although specific microhabitat values differed between the main stem and tributary populations, the overall patterns in brook trout microhabitat use were consistent regardless of stream size. Habitat suitability curves were constructed based on brook trout microhabitat use and will be used to design and monitor the effectiveness of future habitat restoration efforts in the Shavers Fork watershed. Our results suggest that habitat enhancement projects that increase the availability of deep, high velocity microhabitats adjacent to cover would benefit brook trout in both small tributaries and larger river main stems.

Spatial and temporal patterns of stream burial and its effect on habitat connectivity across headwater stream communities of the Potomac River Basin, USA

NASA Astrophysics Data System (ADS)

Weitzell, R.; Guinn, S. M.; Elmore, A. J.

2012-12-01

The process of directing streams into culverts, pipes, or concrete-lined ditches during urbanization, known as stream burial, alters the primary physical, chemical, and biological processes of streams. Knowledge of the cumulative impacts of reduced structure and ecological function within buried stream networks is crucial for informing management of stream ecosystems, in light of continued growth in urban areas, and the uncertain response of freshwater ecosystems to the stresses of global climate change. To address this need, we utilized recently improved stream maps for the Potomac River Basin (PRB) to describe the extent and severity of stream burial across the basin. Observations of stream burial made from high resolution aerial photographs (>1% of total basin area) and a decision tree using spatial statistics from impervious cover data were used to predict stream burial at 4 time-steps (1975, 1990, 2001, 2006). Of the roughly 95,500 kilometers (km) of stream in the PRB, approximately 4551 km (4.76%) were buried by urban development as of 2001. Analysis of county-level burial trends shows differential patterns in the timing and rates of headwater stream burial, which may be due to local development policies, topographical constraints, and/or time since development. Consistently higher rates of stream burial were observed for small streams, decreasing with stream order. Headwater streams (1st-2nd order) are disproportionately affected, with burial rates continuing to increase over time in relation to larger stream orders. Beyond simple habitat loss, headwater burial decreases connectivity among headwater populations and habitats, with potential to affect a wide range of important ecological processes. To quantify changes to regional headwater connectivity we applied a connectivity model based on electrical circuit theory. Circuit-theoretical models function by treating the landscape as a resistance surface, representing hypothesized relationships between

Small stream ecosystem variability in the Sierra Nevada of California

Treesearch

C.T. Hunsaker; S.M. Eagan

2003-01-01

The quality of aquatic and riparian ecosystems is a function of their condition and the integrity of adjacent uplands in their watersheds. While small streams make up a large proportion of the overall stream network, our knowledge of how they function is still limited. The Kings River Experimental Watershed (KREW) was initiated in 2000 to quantify the variability in...

Trophic Interactions Between Insects and Stream-Associated Amphibians in Steep, Cobble-Bottom Streams of the Pacific Coast of North America

PubMed Central

Atwood, Trisha; Richardson, John S.

2012-01-01

Two native, stream-associated amphibians are found in coastal streams of the west coast of North America, the tailed frog and the coastal giant salamander, and each interacts with stream insects in contrasting ways. For tailed frogs, their tadpoles are the primary life stage found in steep streams and they consume biofilm from rock surfaces, which can have trophic and non-trophic effects on stream insects. By virtue of their size the tadpoles are relatively insensitive to stream insect larvae, and tadpoles are capable of depleting biofilm levels directly (exploitative competition), and may also “bulldoze” insect larvae from the surfaces of stones (interference competition). Coastal giant salamander larvae, and sometimes adults, are found in small streams where they prey primarily on stream insects, as well as other small prey. This predator-prey interaction with stream insects does not appear to result in differences in the stream invertebrate community between streams with and without salamander larvae. These two examples illustrate the potential for trophic and non-trophic interactions between stream-associated amphibians and stream insects, and also highlights the need for further research in these systems. PMID:26466536

Dendritic network models: Improving isoscapes and quantifying influence of landscape and in-stream processes on strontium isotopes in rivers

USGS Publications Warehouse

Brennan, Sean R.; Torgersen, Christian E.; Hollenbeck, Jeff P.; Fernandez, Diego P.; Jensen, Carrie K; Schindler, Daniel E.

2016-01-01

A critical challenge for the Earth sciences is to trace the transport and flux of matter within and among aquatic, terrestrial, and atmospheric systems. Robust descriptions of isotopic patterns across space and time, called “isoscapes,” form the basis of a rapidly growing and wide-ranging body of research aimed at quantifying connectivity within and among Earth's systems. However, isoscapes of rivers have been limited by conventional Euclidean approaches in geostatistics and the lack of a quantitative framework to apportion the influence of processes driven by landscape features versus in-stream phenomena. Here we demonstrate how dendritic network models substantially improve the accuracy of isoscapes of strontium isotopes and partition the influence of hydrologic transport versus local geologic features on strontium isotope ratios in a large Alaska river. This work illustrates the analytical power of dendritic network models for the field of isotope biogeochemistry, particularly for provenance studies of modern and ancient animals.

Quantized circular photogalvanic effect in Weyl semimetals

NASA Astrophysics Data System (ADS)

de Juan, Fernando; Grushin, Adolfo G.; Morimoto, Takahiro; Moore, Joel E.

The circular photogalvanic effect (CPGE) is the part of a photocurrent that switches depending on the sense of circular polarization of the incident light. It has been consistently observed in systems without inversion symmetry and depends on non-universal material details. We find that in a class of Weyl semimetals (e.g. SrSi2) and three-dimensional Rashba materials (e.g. doped Te) without inversion and mirror symmetries, the CPGE trace is effectively Quantized in terms of the combination of fundamental constants e3/h2 cɛ0 with no material-dependent parameters. This is so because the CPGE directly measures the topological charge of Weyl points near the Fermi surface, and non-quantized corrections from disorder and additional bands can be small over a significant range of incident frequencies. Moreover, the magnitude of the CPGE induced by a Weyl node is relatively large, which enables the direct detection of the monopole charge with current techniques.

Quantized circular photogalvanic effect in Weyl semimetals

NASA Astrophysics Data System (ADS)

de Juan, Fernando; Grushin, Adolfo G.; Morimoto, Takahiro; Moore, Joel E.

2017-07-01

The circular photogalvanic effect (CPGE) is the part of a photocurrent that switches depending on the sense of circular polarization of the incident light. It has been consistently observed in systems without inversion symmetry and depends on non-universal material details. Here we find that in a class of Weyl semimetals (for example, SrSi2) and three-dimensional Rashba materials (for example, doped Te) without inversion and mirror symmetries, the injection contribution to the CPGE trace is effectively quantized in terms of the fundamental constants e, h, c and with no material-dependent parameters. This is so because the CPGE directly measures the topological charge of Weyl points, and non-quantized corrections from disorder and additional bands can be small over a significant range of incident frequencies. Moreover, the magnitude of the CPGE induced by a Weyl node is relatively large, which enables the direct detection of the monopole charge with current techniques.

Effects of urbanization and climate change on stream health in north-central Texas

USDA-ARS?s Scientific Manuscript database

Estimation of stream health involves the analysis of changes in aquatic species, riparian vegetation, micro-invertebrates, and channel degradation due to hydrologic changes occurring from anthropogenic activities. In this study, we quantified stream health changes arising from urbanization and clim...

Identification of differentially expressed circular RNAs in human colorectal cancer.

PubMed

Zhang, Peili; Zuo, Zhigui; Shang, Wenjing; Wu, Aihua; Bi, Ruichun; Wu, Jianbo; Li, Shaotang; Sun, Xuecheng; Jiang, Lei

2017-03-01

Circular RNA, a class of non-coding RNA, is a new group of RNAs and is related to tumorigenesis. Circular RNAs are suggested to be ideal candidate biomarkers with potential diagnostic and therapeutic implications. However, little is known about their expression in human colorectal cancer. In our study, differentially expressed circular RNAs were detected using circular RNA array in paired tumor and adjacent non-tumorous tissues from six colorectal cancer patients. Expression levels of selected circular RNAs (hsa_circRNA_103809 and hsa_circRNA_104700) were measured by real-time polymerase chain reaction in 170 paired colorectal cancer samples for validation. Statistical analyses were conducted to investigate the association between hsa_circRNA_103809 and hsa_circRNA_104700 expression levels and respective patient clinicopathological features. Receiver operating characteristic curve was constructed to evaluate the diagnostic values. Our results indicated that there were 125 downregulated and 76 upregulated circular RNAs in colorectal cancer tissues compared with normal tissues. We also first demonstrated that the expression levels of hsa_circRNA_103809 ( p < 0.0001) and hsa_circRNA_104700 ( p = 0.0003) were significantly lower in colorectal cancer than in normal tissues. The expression level of hsa_circRNA_103809 was significantly correlated with lymph node metastasis ( p = 0.021) and tumor-node-metastasis stage ( p = 0.011), and the expression level of hsa_circRNA_104700 was significantly correlated with distal metastasis ( p = 0.036). The area under receiver operating characteristic curves of hsa_circRNA_103809 and hsa_circRNA_104700 were 0.699 ( p < 0.0001) and 0.616 ( p < 0.0001), respectively. In conclusion, these results suggest that hsa_circRNA_103809 and hsa_circRNA_104700 may be potentially involved in the development of colorectal cancer and serve as potential biomarkers for the diagnosis of colorectal cancer.

Stream-groundwater exchange and hydrologic turnover at the network scale

NASA Astrophysics Data System (ADS)

Covino, Tim; McGlynn, Brian; Mallard, John

2011-12-01

The exchange of water between streams and groundwater can influence stream water quality, hydrologic mass balances, and attenuate solute export from watersheds. We used conservative tracer injections (chloride, Cl-) across 10 stream reaches to investigate stream water gains and losses from and to groundwater at larger spatial and temporal scales than typically associated with hyporheic exchanges. We found strong relationships between reach discharge, median tracer velocity, and gross hydrologic loss across a range of stream morphologies and sizes in the 11.4 km2 Bull Trout Watershed of central ID. We implemented these empirical relationships in a numerical network model and simulated stream water gains and losses and subsequent fractional hydrologic turnover across the stream network. We found that stream gains and losses from and to groundwater can influence source water contributions and stream water compositions across stream networks. Quantifying proportional influences of source water contributions from runoff generation locations across the network on stream water composition can provide insight into the internal mechanisms that partially control the hydrologic and biogeochemical signatures observed along networks and at watershed outlets.

Effects of pressure distribution on parallel circular porous plates with combined effect of piezo-viscous dependency and non-Newtonian couple stress fluid

NASA Astrophysics Data System (ADS)

Vijayakumar, B.; Kesavan, Sundarammal

2018-04-01

Piezo-viscous effect i.e., Viscosity-pressure dependency has an important part in the applications of fluid flows like fluid lubrication, micro fluidics and geophysics. In this paper, the joint effects of piezo-viscous dependency and non-Newtonian couple stresses on the performance of circular porous plate’s squeeze film bearing have been studied. The results for pressure with various values of viscosity-pressure parameters are numerically calculated and compared with iso-viscous couple stress and Newtonian lubricants. Due to piezo-viscous effect, the pressure with piezo-viscous Non-Newtonian is significantly higher than the pressure with iso-viscous Newtonian and iso-viscous Non-Newtonian fluid.

Circular Migration by Mexican Female Sex Workers Who are Injection Drug Users: Implications for HIV in Mexican Sending Communities

PubMed Central

Ojeda, Victoria D.; Burgos, José Luis; Hiller, Sarah P.; Lozada, Remedios; Rangel, Gudelia; Vera, Alicia; Artamonova, Irina; Rodriguez, Carlos Magis

2013-01-01

Background Circular migration and injection drug use increase the risk of HIV transmission in sending communities. We describe female sex workers who are injection drug users’ (FSW-IDUs) circular migration and drug use behaviors. Methods Between 2008-2010, 258 migrant FSW-IDUs residing in Tijuana and Ciudad Juarez, Mexico responded to questionnaires. Results 24% of FSW-IDUs were circular migrants. HIV prevalence was 3.3% in circular migrants and 6.1% in non-circular migrants; 50% of circular and 82% of non-circular migrants were unaware of their HIV infection. Among circular migrants, 44% (n=27) consumed illicit drugs in their birthplace; 70% of these (n=20) injected drugs and one-half of injectors shared injection equipment in their birthplace. Women reporting active social relationships were significantly more likely to return home. Discussion Circular migrant FSW-IDUs exhibit multiple HIV risks and opportunities for bridging populations. Regular HIV testing and treatment and access to substance use services is critical for FSW-IDUs and their sexual/drug-using contacts. PMID:21833727

Interpolation of Water Quality Along Stream Networks from Synoptic Data

NASA Astrophysics Data System (ADS)

Lyon, S. W.; Seibert, J.; Lembo, A. J.; Walter, M. T.; Gburek, W. J.; Thongs, D.; Schneiderman, E.; Steenhuis, T. S.

2005-12-01

Effective catchment management requires water quality monitoring that identifies major pollutant sources and transport and transformation processes. While traditional monitoring schemes involve regular sampling at fixed locations in the stream, there is an interest synoptic or `snapshot' sampling to quantify water quality throughout a catchment. This type of sampling enables insights to biogeochemical behavior throughout a stream network at low flow conditions. Since baseflow concentrations are temporally persistence, they are indicative of the health of the ecosystems. A major problem with snapshot sampling is the lack of analytical techniques to represent the spatially distributed data in a manner that is 1) easily understood, 2) representative of the stream network, and 3) capable of being used to develop land management scenarios. This study presents a kriging application using the landscape composition of the contributing area along a stream network to define a new distance metric. This allows for locations that are more `similar' to stay spatially close together while less similar locations `move' further apart. We analyze a snapshot sampling campaign consisting of 125 manually collected grab samples during a summer recession flow period in the Townbrook Research Watershed. The watershed is located in the Catskill region of New York State and represents the mixed forest-agriculture land uses of the region. Our initial analysis indicated that stream nutrients (nitrogen and phosphorus) and chemical (major cations and anions) concentrations are controlled by the composition of landscape characteristics (landuse classes and soil types) surrounding the stream. Based on these relationships, an intuitively defined distance metric is developed by combining the traditional distance between observations and the relative difference in composition of contributing area. This metric is used to interpolate between the sampling locations with traditional geostatistic

Comparison of glacial and non-glacial-fed streams to evaluate the loading of persistent organic pollutants through seasonal snow/ice melt.

PubMed

Bizzotto, E C; Villa, S; Vaj, C; Vighi, M

2009-02-01

The release of persistent organic pollutants (PCBs, HCB, HCHs and DDTs) accumulated in Alpine glaciers, was studied during spring-summer 2006 on the Frodolfo glacial-fed stream (Italian Alps). Samples were also taken on a non-glacial stream in the same valley, to compare POP contribution from different water sources (glacier ice, recent snow and spring). In late spring and early summer (May, June) recent snow melting is the most important process. POP contamination is more affected by local emissions and transport, and comparable levels have been measured in both streams for all studied compounds. In late summer and autumn (July-October), the contribution of ice melting strongly increases. In the glacial-fed stream the concentration of chlorinated pesticides (HCHs and DDTs) is about one order of magnitude higher than in the non-glacial-fed. A different behaviour was observed for PCBs, characterised by a peak in June showing, in both streams, concentrations three orders of magnitude higher than the background levels measured in May and in October. This result should be attributed to local emissions rather than long range atmospheric transport (LRAT). This hypothesis is supported by the PCB congener profile in June strictly comparable to the most commonly used Aroclor technical mixtures. The different seasonal behaviour observed for the different groups of chemicals indicates the POP loading in glacial streams is a combined role of long range atmospheric transport and local emission.

Circularly Polarized Luminescence from Simple Organic Molecules.

PubMed

Sánchez-Carnerero, Esther M; Agarrabeitia, Antonia R; Moreno, Florencio; Maroto, Beatriz L; Muller, Gilles; Ortiz, María J; de la Moya, Santiago

2015-09-21

This article aims to show the identity of "circularly polarized luminescent active simple organic molecules" as a new concept in organic chemistry due to the potential interest of these molecules, as availed by the exponentially growing number of research articles related to them. In particular, it describes and highlights the interest and difficulty in developing chiral simple (small and non-aggregated) organic molecules able to emit left- or right-circularly polarized light efficiently, the efforts realized up to now to reach this challenging objective, and the most significant milestones achieved to date. General guidelines for the preparation of these interesting molecules are also presented. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Quantifying Sources and Fluxes of Aquatic Carbon in U.S. Streams and Reservoirs Using Spatially Referenced Regression Models

NASA Astrophysics Data System (ADS)

Boyer, E. W.; Smith, R. A.; Alexander, R. B.; Schwarz, G. E.

2004-12-01

Organic carbon (OC) is a critical water quality characteristic in riverine systems that is an important component of the aquatic carbon cycle and energy balance. Examples of processes controlled by OC interactions are complexation of trace metals; enhancement of the solubility of hydrophobic organic contaminants; formation of trihalomethanes in drinking water; and absorption of visible and UV radiation. Organic carbon also can have indirect effects on water quality by influencing internal processes of aquatic ecosystems (e.g. photosynthesis and autotrophic and heterotrophic activity). The importance of organic matter dynamics on water quality has been recognized, but challenges remain in quantitatively addressing OC processes over broad spatial scales in a hydrological context. In this study, we apply spatially referenced watershed models (SPARROW) to statistically estimate long-term mean-annual rates of dissolved- and total- organic carbon export in streams and reservoirs across the conterminous United States. We make use of a GIS framework for the analysis, describing sources, transport, and transformations of organic matter from spatial databases providing characterizations of climate, land use, primary productivity, topography, soils, and geology. This approach is useful because it illustrates spatial patterns of organic carbon fluxes in streamflow, highlighting hot spots (e.g., organic-rich environments in the southeastern coastal plain). Further, our simulations provide estimates of the relative contributions to streams from allochthonous and autochthonous sources. We quantify surface water fluxes of OC with estimates of uncertainty in relation to the overall US carbon budget; our simulations highlight that aquatic sources and sinks of OC may be a more significant component of regional carbon cycling than was previously thought. Further, we are using our simulations to explore the potential role of climate and other changes in the terrestrial environment on

Circular RNAs are abundant, conserved, and associated with ALU repeats

PubMed Central

Jeck, William R.; Sorrentino, Jessica A.; Wang, Kai; Slevin, Michael K.; Burd, Christin E.; Liu, Jinze; Marzluff, William F.; Sharpless, Norman E.

2013-01-01

Circular RNAs composed of exonic sequence have been described in a small number of genes. Thought to result from splicing errors, circular RNA species possess no known function. To delineate the universe of endogenous circular RNAs, we performed high-throughput sequencing (RNA-seq) of libraries prepared from ribosome-depleted RNA with or without digestion with the RNA exonuclease, RNase R. We identified >25,000 distinct RNA species in human fibroblasts that contained non-colinear exons (a “backsplice”) and were reproducibly enriched by exonuclease degradation of linear RNA. These RNAs were validated as circular RNA (ecircRNA), rather than linear RNA, and were more stable than associated linear mRNAs in vivo. In some cases, the abundance of circular molecules exceeded that of associated linear mRNA by >10-fold. By conservative estimate, we identified ecircRNAs from 14.4% of actively transcribed genes in human fibroblasts. Application of this method to murine testis RNA identified 69 ecircRNAs in precisely orthologous locations to human circular RNAs. Of note, paralogous kinases HIPK2 and HIPK3 produce abundant ecircRNA from their second exon in both humans and mice. Though HIPK3 circular RNAs contain an AUG translation start, it and other ecircRNAs were not bound to ribosomes. Circular RNAs could be degraded by siRNAs and, therefore, may act as competing endogenous RNAs. Bioinformatic analysis revealed shared features of circularized exons, including long bordering introns that contained complementary ALU repeats. These data show that ecircRNAs are abundant, stable, conserved and nonrandom products of RNA splicing that could be involved in control of gene expression. PMID:23249747

Propelling plastics into the circular economy - weeding out the toxics first.

PubMed

Leslie, H A; Leonards, P E G; Brandsma, S H; de Boer, J; Jonkers, N

2016-09-01

The Stockholm Convention bans toxic chemicals on its persistent organic pollutants (POPs) list in order to promote cleaner production and prevent POPs accumulation in the global environment. The original 'dirty dozen' set of POPs has been expanded to include some of the brominated diphenyl ether flame retardants (POP-BDEs). In addition to cleaner production, there is an urgent need for increased resource efficiency to address the finite amount of raw materials on Earth. Recycling plastic enhances resource efficiency and is part of the circular economy approach, but how clean are the materials we are recycling? With the help of a new screening method and detailed analyses, we set out to investigate where these largely obsolete BDEs were showing up in Dutch automotive and electronics waste streams, calculate mass flows and determine to what extent they are entering the new product chains. Our study revealed that banned BDEs and other toxic flame retardants are found at high concentrations in certain plastic materials destined for recycling markets. They were also found in a variety of new consumer products, including children's toys. A mass flow analysis showed that 22% of all the POP-BDE in waste electrical and electronic equipment (WEEE) is expected to end up in recycled plastics because these toxic, bioaccumulative and persistent substances are currently not effectively separated out of plastic waste streams. In the automotive sector, this is 14%, while an additional 19% is expected to end up in second-hand parts (reuse). These results raise the issue of delicate trade-offs between consumer safety/cleaner production and resource efficiency. As petroleum intensive materials, plastic products ought to be repaired, reused, remanufactured and recycled, making good use of the 'inner circles' of the circular economy. Keeping hazardous substances - whether they are well known POPs or emerging contaminants - out of products and plastic waste streams could make these

77 FR 41967 - Certain Circular Welded Carbon Steel Pipes and Tubes From India, Thailand, and Turkey; Certain...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-07-17

... Pipes and Tubes From India, Thailand, and Turkey; Certain Circular Welded Non-Alloy Steel Pipe From... on (1) certain circular welded carbon steel pipes and tubes from India, Thailand, and Turkey; (2... circular welded carbon steel pipes and tubes from Turkey would likely lead to continuation or recurrence of...

On the damping of right hand circularly polarized waves in spin quantum plasmas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Iqbal, Z.; Hussain, A., E-mail: ah-gcu@yahoo.com; Department of Physics, Quaid-i-Azam University Islamabad, Islamabad 45320

2014-12-15

General dispersion relation for the right hand circularly polarized waves has been derived using non-relativistic spin quantum kinetic theory. Employing the derived dispersion relation, temporal and spatial damping of the right hand circularly polarized waves are studied for both the degenerate and non-degenerate plasma regimes for two different frequency domains: (i) k{sub ∥}v≫(ω+ω{sub ce}),(ω+ω{sub cg}) and (ii) k{sub ∥}v≪(ω+ω{sub ce}),(ω+ω{sub cg}). Comparison of the cold and hot plasma regimes shows that the right hand circularly polarized wave with spin-effects exists for larger k-values as compared to the spinless case, before it damps completely. It is also found that the spin-effectsmore » can significantly influence the phase and group velocities of the whistler waves in both the degenerate and non-degenerate regimes. The results obtained are also analyzed graphically for some laboratory parameters to demonstrate the physical significance of the present work.« less

Nitrogen Uptake and Denitrification in Restored and Unrestored Streams in Urban Maryland, USA

EPA Science Inventory

There is growing interest in rates of nitrate uptake and denitrification in restored streams to better understand the effects of restoration on nitrogen processing. This study quantified nitrate uptake in 2 restored and 2 unrestored streams in Baltimore, Maryland, U.S.A. using n...

Non-indigenous bamboo along headwater streams of the Luquillo Mountains, Puerto Rico: leaf fall, aquatic leaf decay and patterns of invasion

Treesearch

PAUL J. O' CONNOR; ALAN P. COVICH; F. N. SCATENA; LLOYD L. LOOPE

2000-01-01

The introduction of bamboo to montane rain forests of the Luquillo Mountains, Puerto Rico in the 1930s and 1940s has led to present-day bamboo monocultures in numerous riparian areas. When a non-native species invades a riparian ecosystem, in-stream detritivores can be affected. Bamboo dynamics expected to in¯uence stream communities in the Luquillo Experimental Forest...

A New Limit on CMB Circular Polarization from SPIDER

DOE PAGES

Nagy, J. M.; Ade, P. A. R.; Amiri, M.; ...

2017-08-01

We present a new upper limit on CMB circular polarization from the 2015 flight of SPIDER, a balloon-borne telescope designed to search formore » $B$-mode linear polarization from cosmic inflation. Although the level of circular polarization in the CMB is predicted to be very small, experimental limits provide a valuable test of the underlying models. By exploiting the non-zero circular-to-linear polarization coupling of the HWP polarization modulators, data from SPIDER's 2015 Antarctic flight provides a constraint on Stokes $V$ at 95 and 150 GHz from $$33<\\ell<307$$. No other limits exist over this full range of angular scales, and SPIDER improves upon the previous limit by several orders of magnitude, providing 95% C.L. constraints on $$\\ell (\\ell+1)C_{\\ell}^{VV}/(2\\pi)$$ ranging from 141 $$\\mu K ^2$$ to 203 $$\\mu K ^2$$ at 150 GHz for a thermal CMB spectrum. As linear CMB polarization experiments become increasingly sensitive, the techniques described in this paper can be applied to obtain stronger constraints on circular polarization.« less

A New Limit on CMB Circular Polarization from SPIDER

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nagy, J. M.; Ade, P. A. R.; Amiri, M.

We present a new upper limit on CMB circular polarization from the 2015 flight of SPIDER, a balloon-borne telescope designed to search formore » $B$-mode linear polarization from cosmic inflation. Although the level of circular polarization in the CMB is predicted to be very small, experimental limits provide a valuable test of the underlying models. By exploiting the non-zero circular-to-linear polarization coupling of the HWP polarization modulators, data from SPIDER's 2015 Antarctic flight provides a constraint on Stokes $V$ at 95 and 150 GHz from $$33<\\ell<307$$. No other limits exist over this full range of angular scales, and SPIDER improves upon the previous limit by several orders of magnitude, providing 95% C.L. constraints on $$\\ell (\\ell+1)C_{\\ell}^{VV}/(2\\pi)$$ ranging from 141 $$\\mu K ^2$$ to 203 $$\\mu K ^2$$ at 150 GHz for a thermal CMB spectrum. As linear CMB polarization experiments become increasingly sensitive, the techniques described in this paper can be applied to obtain stronger constraints on circular polarization.« less

Experimental and numerical investigation on heat transfer augmentation in a circular tube under forced convection with annular differential blockages/inserts

NASA Astrophysics Data System (ADS)

Waghole, D. R.

2018-06-01

Investigation on heat transfer by generating turbulence in the fluid stream inside the circular tube is an innovative area of research for researchers. Hence, many techniques are been investigated and adopted for enhancement of heat transfer rate to reduce the size and the cost of the heat exchanger/circular tube. In the present study the effect of differential solid ring inserts /turbulators on heat transfer, friction factor of heat exchanger/circular tube was evaluated through experimentally and numerically. The experiments were conducted in range of 3000 ≤Re≤ 6500 and annular blockages 0 ≤ɸ≤50 %. The heat transfer rate was higher for differential combination of inserts as compared to tube fitted with uniform inserts. The maximum heat transfer was obtained by the use of differential metal circular ring inserts/blockages. From this study, Nusselt number, friction factor and enhancement factor are found as 2.5-3.5 times, 12% - 50.5% and 155% - 195%, respectively with water. Finally new possible correlations for predicting heat transfer and friction factor in the flow of water through the circular tube with differential blockages/inserts are proposed.

Are macroinvertebrate functional traits useful in differentiating hydrologically variable small piedmont streams and their recovery from drought?

EPA Science Inventory

We quantified benthic macroinvertebrates in six small (1st order) Alabama piedmont streams from 1994-1998. Streams spanned a gradient of hydrologic permanence from typically intermittent to perennial, the degree of permanence for a given stream depending on water year. Initial sa...

Quantifying the intelligibility of speech in noise for non-native listeners.

PubMed

van Wijngaarden, Sander J; Steeneken, Herman J M; Houtgast, Tammo

2002-04-01

When listening to languages learned at a later age, speech intelligibility is generally lower than when listening to one's native language. The main purpose of this study is to quantify speech intelligibility in noise for specific populations of non-native listeners, only broadly addressing the underlying perceptual and linguistic processing. An easy method is sought to extend these quantitative findings to other listener populations. Dutch subjects listening to Germans and English speech, ranging from reasonable to excellent proficiency in these languages, were found to require a 1-7 dB better speech-to-noise ratio to obtain 50% sentence intelligibility than native listeners. Also, the psychometric function for sentence recognition in noise was found to be shallower for non-native than for native listeners (worst-case slope around the 50% point of 7.5%/dB, compared to 12.6%/dB for native listeners). Differences between native and non-native speech intelligibility are largely predicted by linguistic entropy estimates as derived from a letter guessing task. Less effective use of context effects (especially semantic redundancy) explains the reduced speech intelligibility for non-native listeners. While measuring speech intelligibility for many different populations of listeners (languages, linguistic experience) may be prohibitively time consuming, obtaining predictions of non-native intelligibility from linguistic entropy may help to extend the results of this study to other listener populations.

Quantifying the intelligibility of speech in noise for non-native listeners

NASA Astrophysics Data System (ADS)

van Wijngaarden, Sander J.; Steeneken, Herman J. M.; Houtgast, Tammo

2002-04-01

When listening to languages learned at a later age, speech intelligibility is generally lower than when listening to one's native language. The main purpose of this study is to quantify speech intelligibility in noise for specific populations of non-native listeners, only broadly addressing the underlying perceptual and linguistic processing. An easy method is sought to extend these quantitative findings to other listener populations. Dutch subjects listening to Germans and English speech, ranging from reasonable to excellent proficiency in these languages, were found to require a 1-7 dB better speech-to-noise ratio to obtain 50% sentence intelligibility than native listeners. Also, the psychometric function for sentence recognition in noise was found to be shallower for non-native than for native listeners (worst-case slope around the 50% point of 7.5%/dB, compared to 12.6%/dB for native listeners). Differences between native and non-native speech intelligibility are largely predicted by linguistic entropy estimates as derived from a letter guessing task. Less effective use of context effects (especially semantic redundancy) explains the reduced speech intelligibility for non-native listeners. While measuring speech intelligibility for many different populations of listeners (languages, linguistic experience) may be prohibitively time consuming, obtaining predictions of non-native intelligibility from linguistic entropy may help to extend the results of this study to other listener populations.

Sub-Auroral Polarization Stream (SAPS) Events Under Non-storm Conditions

NASA Astrophysics Data System (ADS)

Sazykin, S. Y.; Coster, A. J.; Huba, J.; Spiro, R. W.; Baker, J. B.; Kunduri, B.; Ruohoniemi, J. M.; Erickson, P. J.; Wolf, R.

2017-12-01

The occurrence of Sub-Auroral Polarization Stream, or SAPS, structures, defined here as latitudinally narrow channels of enhanced westward plasma convection in the evening ionosphere equatorward of the auroral electron precipitation boundary, is most dramatic during geomagnetic storms. However, SAPS-like structures known as Polarization Jets or SAIDs (Sub-Auroral Ion Drift events) are also frequently observed during non-storm conditions, typically during periods of isolated substorm activity or during bursts of enhanced convection associated with southward IMF Bz component. This paper presents results from data analysis and numerical simulations of several SAPS/SAID events observed during non-storm conditions. We use convection velocity measurements from the mid-latitude chain of SuperDARN radars and cross-track drift meter data from DMSP spacecraft to identify SAPS/SAID and to characterize their structure and temporal evolution. DMSP topside ion density data and high-resolution ground-based GPS total electron content (TEC) maps are used to determine the ionospheric and plasmaspheric morphology of SAPS regions. DMSP electron precipitation data are used to determine auroral boundaries. We also present simulation results of the chosen event intervals obtained with the SAMI3-RCM ionosphere-magnetosphere coupled model. Observational results are analyzed to identify systematic differences between non-storm SAPS/SAID and the picture that has emerged based on previous storm time studies. Simulation results are used to provide physical interpretation of these differences.

Use of aerial photograph, channel-type interpretations to predict habitat availability in small streams. Restoration project 95505b. Exxon Valdez oil spill restoration project final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Olson, R.A.

1995-05-01

In-stream habitats were quantified and qualified for nine stream channel-types. The channel types were identified using interpretations from stereo pairs of color and infrared aerial photographs. A total of 70 sites were sampled for streams located on the northwest portion of the Kenai Peninsula, in south-central Alaska. Channel-types were a significant predictor (P < 0.05) of the area (sq m) for 9 of 13 habitat types. Channel-types that had similar habitat composition, differed in size and depth of those habitats. Spawning habitat also appeared to be correlated to channel-type, however the within channel-type variability caused the differences to test non-significantmore » P < 0.05.« less

Long-term Patterns of Microhabitat Use by Fish in a Southern Appalachian Stream from 1983 to 1992: Effects of Hydrologic Period, Season and Fish Length

Treesearch

Gary D. Grossman; Robert E. Ratajczak

1998-01-01

We quantified microhabitat use by members of a southern Appalachian stream fish assemblage over a ten-year period that included both floods and droughts. Our study site (37 m in length) encompassed riffle, run and pool habitats. Previous research indicated that species belonged to either benthic or water-column microhabitat guilds. Most species exhibited non-random...

Dynamic ASXL1 Exon Skipping and Alternative Circular Splicing in Single Human Cells

PubMed Central

Natarajan, Sivaraman; Carter, Robert; Brown, Patrick O.

2016-01-01

Circular RNAs comprise a poorly understood new class of noncoding RNA. In this study, we used a combination of targeted deletion, high-resolution splicing detection, and single-cell sequencing to deeply probe ASXL1 circular splicing. We found that efficient circular splicing required the canonical transcriptional start site and inverted AluSx elements. Sequencing-based interrogation of isoforms after ASXL1 overexpression identified promiscuous linear splicing between all exons, with the two most abundant non-canonical linear products skipping the exons that produced the circular isoforms. Single-cell sequencing revealed a strong preference for either the linear or circular ASXL1 isoforms in each cell, and found the predominant exon skipping product is frequently co-expressed with its reciprocal circular isoform. Finally, absolute quantification of ASXL1 isoforms confirmed our findings and suggests that standard methods overestimate circRNA abundance. Taken together, these data reveal a dynamic new view of circRNA genesis, providing additional framework for studying their roles in cellular biology. PMID:27736885

Terrestrial laser scanning for delineating in-stream boulders and quantifying habitat complexity measures

USDA-ARS?s Scientific Manuscript database

Accurate stream topography measurement is important for many ecological applications such as hydraulic modeling and habitat characterization. Habitat complexity measures are often made using total station surveying or visual approximation, which can be subjective and have spatial resolution limitati...

Pesticide load dynamics during stormwater flow events in Mediterranean coastal streams: Alexander stream case study.

PubMed

Topaz, Tom; Egozi, Roey; Eshel, Gil; Chefetz, Benny

2018-06-01

Cultivated land is a major source of pesticides, which are transported with the runoff water and eroded soil during rainfall events and pollute riverine and estuarine environments. Common ecotoxicological assessments of riverine systems are mainly based on water sampling and analysis of only the dissolved phase, and address a single pesticide's toxicological impact under laboratory conditions. A clear overview of mixtures of pesticides in the adsorbed and dissolved phases is missing, and therefore the full ecotoxicological impact is not fully addressed. The aim of this study was to characterize and quantify pesticide concentrations in both suspended sediment and dissolved phases, to provide a better understanding of pesticide-load dynamics during storm events in coastal streams in a Mediterranean climate. High-resolution sampling campaigns of seven flood events were conducted during two rainy seasons in Alexander stream, Israel. Samples of suspended sediments were separated from the solution and both media were analyzed separately for 250 pesticides. A total of 63 pesticides were detected; 18 and 16 pesticides were found solely in the suspended sediments and solution, respectively. Significant differences were observed among the pesticide groups: only 7% of herbicide, 20% of fungicide and 42% of insecticide load was transported with the suspended sediments. However, in both dissolved and adsorbed phases, a mix of pesticides was found which were graded from "mobile" to "non-mobile" with varied distribution coefficients. Diuron, and tebuconazole were frequently found in large quantities in both phases. Whereas insecticide and fungicide transport is likely governed by application time and method, the governing factor for herbicide load was the magnitude of the stream discharge. The results show a complex dynamic of pesticide load affected by excessive use of pesticides, which should be taken into consideration when designing projects to monitor riverine and estuarine

Connectivity of streams and wetlands to downstream waters: An integrated systems framework

USGS Publications Warehouse

Leibowitz, Scott G.; Wigington, Parker J.; Schoefield, Kate A.; Alexander, Laurie C.; Vanderhoof, Melanie; Golden, Heather E.

2018-01-01

Interest in connectivity has increased in the aquatic sciences, partly because of its relevance to the Clean Water Act. This paper has two objectives: (1) provide a framework to understand hydrological, chemical, and biological connectivity, focusing on how headwater streams and wetlands connect to and contribute to rivers; and (2) briefly review methods to quantify hydrological and chemical connectivity. Streams and wetlands affect river structure and function by altering material and biological fluxes to the river; this depends on two factors: (1) functions within streams and wetlands that affect material fluxes; and (2) connectivity (or isolation) from streams and wetlands to rivers that allows (or prevents) material transport between systems. Connectivity can be described in terms of frequency, magnitude, duration, timing, and rate of change. It results from physical characteristics of a system, e.g., climate, soils, geology, topography, and the spatial distribution of aquatic components. Biological connectivity is also affected by traits and behavior of the biota. Connectivity can be altered by human impacts, often in complex ways. Because of variability in these factors, connectivity is not constant but varies over time and space. Connectivity can be quantified with field‐based methods, modeling, and remote sensing. Further studies using these methods are needed to classify and quantify connectivity of aquatic ecosystems and to understand how impacts affect connectivity.

Circular RNA: New Regulatory Molecules.

PubMed

Belousova, E A; Filipenko, M L; Kushlinskii, N E

2018-04-01

Circular RNA are a family of covalently closed circular RNA molecules, formed from pre-mRNA of coding genes by means of splicing (canonical and alternative noncanonical splicing). Maturation of circular RNA is regulated by cis- and trans-elements. Complete list of biological functions of these RNA is not yet compiled; however, their capacity to interact with specific microRNA and play a role of a depot attracts the greatest interest. This property makes circular RNA active regulatory transcription factors. Circular RNA have many advantages over their linear analogs: synthesis of these molecules is conservative, they are universal, characterized by clearly determined specificity, and are resistant to exonucleases. In addition, the level of their expression is often higher than that of their linear forms. It should be noted that expression of circular RNA is tissue-specific. Moreover, some correlations between changes in the repertoire and intensity of expression of circular RNA and the development of some pathologies have been detected. Circular RNA have certain advantages and can serve as new biomarkers for the diagnosis, prognosis, and evaluation of response to therapy.

Nutrients in the Nation?s streams and groundwater: National Findings and Implications

USGS Publications Warehouse

Dubrovsky, Neil M.; Hamilton, Pixie A.

2010-01-01

A comprehensive national analysis of the distribution and trends of nutrient concentrations in streams and groundwater from 1992 through 2004 is provided by the National Water-Quality Assessment (NAWQA) Program of the United States Geological Survey (USGS). Findings describe the distribution and causes of varying nutrient concentrations in streams and groundwater throughout the Nation and examine the primary sources that contribute to elevated concentrations. Results show that excessive nutrient enrichment is a widespread cause of ecological degradation in streams and that nitrate contamination of groundwater used for drinking water, particularly shallow domestic wells in agricultural areas, is a continuing human-health concern. Finally, despite major Federal, State and local nonpoint-source nutrient control efforts for streams and watersheds across the Nation, USGS trend analyses for 1993?2003 suggest limited national progress to reduce the impacts of nonpoint sources of nutrients during this period. Instead, concentrations have remained the same or increased in many streams and aquifers across the Nation, and continue to pose risks to aquatic life and human health. This Fact Sheet highlights selected national findings and their implications, and serves as a companion product to the complete analysis reported in the USGS Circular titled ?The Quality of Our Nation?s Waters?Nutrients in the Nation?s Streams and Groundwater, 1992?2004.?

Modeling radio circular polarization in the Crab nebula

NASA Astrophysics Data System (ADS)

Bucciantini, N.; Olmi, B.

2018-03-01

In this paper, we present, for the first time, simulated maps of the circularly polarized synchrotron emission from the Crab nebula, using multidimensional state of the art models for the magnetic field geometry. Synchrotron emission is the signature of non-thermal emitting particles, typical of many high-energy astrophysical sources, both Galactic and extragalactic ones. Its spectral and polarization properties allow us to infer key information on the particles distribution function and magnetic field geometry. In recent years, our understanding of pulsar wind nebulae has improved substantially thanks to a combination of observations and numerical models. A robust detection or non-detection of circular polarization will enable us to discriminate between an electron-proton plasma and a pair plasma, clarifying once for all the origin of the radio emitting particles, setting strong constraints on the pair production in pulsar magnetosphere, and the role of turbulence in the nebula. Previous attempts at measuring the circular polarization have only provided upper limits, but the lack of accurate estimates, based on reliable models, makes their interpretation ambiguous. We show here that those results are above the expected values, and that current polarimetric techniques are not robust enough for conclusive result, suggesting that improvements in construction and calibration of next generation radio facilities are necessary to achieve the desired sensitivity.

miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA

PubMed Central

Hansen, Thomas B; Wiklund, Erik D; Bramsen, Jesper B; Villadsen, Sune B; Statham, Aaron L; Clark, Susan J; Kjems, Jørgen

2011-01-01

MicroRNAs (miRNAs) are ∼22 nt non-coding RNAs that typically bind to the 3′ UTR of target mRNAs in the cytoplasm, resulting in mRNA destabilization and translational repression. Here, we report that miRNAs can also regulate gene expression by targeting non-coding antisense transcripts in human cells. Specifically, we show that miR-671 directs cleavage of a circular antisense transcript of the Cerebellar Degeneration-Related protein 1 (CDR1) locus in an Ago2-slicer-dependent manner. The resulting downregulation of circular antisense has a concomitant decrease in CDR1 mRNA levels, independently of heterochromatin formation. This study provides the first evidence for non-coding antisense transcripts as functional miRNA targets, and a novel regulatory mechanism involving a positive correlation between mRNA and antisense circular RNA levels. PMID:21964070

[Integrated evaluation of circular agriculture system: a life cycle perspective].

PubMed

Liang, Long; Chen, Yuan-Quan; Gao, Wang-Sheng

2010-11-01

For the point of view that recycling economy system is one of ways to achieve the low-carbon economy, we have made an evaluation on a typical circular agriculture duck industry in Hunan Province, China, through improving the framework of life cycle assessment (LCA). The analysis indicated that the consumption of non-renewable resources, land and water were 48.629 MJ, 2.36 m2 and 1 321.41 kg, while the potential greenhouse gas (GHGs), acidification, eutrophication, human toxicity, freshwater ecotoxicity and terrestrial ecotoxicity were 11 543.26 g (CO2 eq), 52.36g (SO2eq), 25.83g (PO4eq), 1.26, 60.74 and 24.65 g (1,4-DCBeq), respectively. The potential damage of aquatic eutrophication, freshwater ecotoxicity and terrestrial ecotoxicity was more serious than that of GHGs. Main results were following: i. the circular agricultural chain promoted the principle of "moderate circulation", which based on the traditional production methods; ii. circular agriculture could not blindly pursue low carbon development. Instead, soil and biological carbon sequestration should be considered, in addition to reducing carbon emissions; iii. circular economy and circular agriculture should take other potential environmental impacts into account such as acidification, eutrophication and ecotoxicity,with the exception to carbon emissions,to developed integrated system assessment; iv. LCA could provide a comprehensive assessment of circular agriculture, and it was worth of further study.

Instream wood recruitment, channel complexity, and their relationship to stream ecology in forested headwater streams under alternative stable states

NASA Astrophysics Data System (ADS)

Livers, B.; Wohl, E.

2015-12-01

Human alteration to forests has had lasting effects on stream channels worldwide. Such land use changes affect how wood enters and is stored in streams as individual pieces and as logjams. Changes in wood recruitment affect the complexity and benefits wood can provide to the stream environment, such as zones of flow separation that store fine sediment and organic matter, increased nutrient processing, and greater habitat potential, which can enhance biota and cascade through stream-riparian ecosystems. Previous research in our study area shows that modern headwater streams flowing through old-growth, unmanaged forests have more wood than streams in young, managed forests, but does not explicitly evaluate how wood affects channel complexity or local ecology. 'Managed' refers to forests previously or currently exposed to human alteration. Alteration has long since ceased in some areas, but reduced wood loads in managed streams persist. Our primary objective was to quantify stream complexity metrics, with instream wood as a mediator, on streams across a gradient of management and disturbance histories in order to examine legacy effects of human alteration to forests. Data collected in the Southern Rocky Mountains include 24 2nd to 3rd order subalpine streams categorized into: old-growth unmanaged; younger, naturally disturbed unmanaged; and younger managed. We assessed instream wood loads and logjams and evaluated how they relate to channel complexity using a number of metrics, such as standard deviation of bed and banks, volume of pools, ratios of stream to valley lengths and stream to valley area, and diversity of substrate, gradient, and morphology. Preliminary results show that channel complexity is directly related to instream wood loads and is greatest in streams in old-growth. Related research in the field area indicates that streams with greater wood loads also have increased nutrient processing and greater abundance and diversity of aquatic insect predators.

Assessment of myoblast circular RNA dynamics and its correlation with miRNA during myogenic differentiation.

PubMed

Zhang, Pengpeng; Xu, Haixia; Li, Rui; Wu, Wei; Chao, Zhe; Li, Cencen; Xia, Wei; Wang, Lei; Yang, Jinzeng; Xu, Yongjie

2018-06-01

Myoblast differentiation is a highly complex process that is regulated by proteins as well as by non-coding RNAs. Circular RNAs have been identified as an emerging new class of non-coding RNA in the modulation of skeletal muscle development, whereas their expression profiles and functional regulation in myoblast differentiation remain unknown. In the present study, we performed deep RNA-sequencing of C2C12 myoblasts during cell differentiation and uncovered 37,751 unique circular RNAs derived from 6943 hosting genes. The ensuing qRT-PCR and RNA fluorescence in situ hybridization verification were carried out to confirm the RNA-sequencing results. An unbiased analysis demonstrated dynamic circular RNA expression changes in the process of myoblast differentiation, and the circular RNA abundances were independent from their cognate linear RNAs. Gene ontology analysis showed that many down-regulated circular RNAs were exclusive to cell division and the cell cycle, whereas up-regulated circular RNAs were related to the cell development process. Furthermore, interaction networks of circular RNA-microRNA were constructed. Several microRNAs well-known for myoblast regulation, such as miR-133, miR-24 and miR-23a, were in this network. In summary, this study showed that circular RNA expression dynamics changed during myoblast differentiation. Circular RNAs play a role in regulating the myoblast cell cycle and development by acting as microRNA binding sites to facilitate their regulation of gene expression during myoblast differentiation. These findings open a new avenue for future investigation of this emerging RNA class in skeletal muscle growth and development. Copyright © 2018 Elsevier Ltd. All rights reserved.

Bright circularly polarized soft X-ray high harmonics for X-ray magnetic circular dichroism.

PubMed

Fan, Tingting; Grychtol, Patrik; Knut, Ronny; Hernández-García, Carlos; Hickstein, Daniel D; Zusin, Dmitriy; Gentry, Christian; Dollar, Franklin J; Mancuso, Christopher A; Hogle, Craig W; Kfir, Ofer; Legut, Dominik; Carva, Karel; Ellis, Jennifer L; Dorney, Kevin M; Chen, Cong; Shpyrko, Oleg G; Fullerton, Eric E; Cohen, Oren; Oppeneer, Peter M; Milošević, Dejan B; Becker, Andreas; Jaroń-Becker, Agnieszka A; Popmintchev, Tenio; Murnane, Margaret M; Kapteyn, Henry C

2015-11-17

We demonstrate, to our knowledge, the first bright circularly polarized high-harmonic beams in the soft X-ray region of the electromagnetic spectrum, and use them to implement X-ray magnetic circular dichroism measurements in a tabletop-scale setup. Using counterrotating circularly polarized laser fields at 1.3 and 0.79 µm, we generate circularly polarized harmonics with photon energies exceeding 160 eV. The harmonic spectra emerge as a sequence of closely spaced pairs of left and right circularly polarized peaks, with energies determined by conservation of energy and spin angular momentum. We explain the single-atom and macroscopic physics by identifying the dominant electron quantum trajectories and optimal phase-matching conditions. The first advanced phase-matched propagation simulations for circularly polarized harmonics reveal the influence of the finite phase-matching temporal window on the spectrum, as well as the unique polarization-shaped attosecond pulse train. Finally, we use, to our knowledge, the first tabletop X-ray magnetic circular dichroism measurements at the N4,5 absorption edges of Gd to validate the high degree of circularity, brightness, and stability of this light source. These results demonstrate the feasibility of manipulating the polarization, spectrum, and temporal shape of high harmonics in the soft X-ray region by manipulating the driving laser waveform.

Bright circularly polarized soft X-ray high harmonics for X-ray magnetic circular dichroism

PubMed Central

Fan, Tingting; Grychtol, Patrik; Knut, Ronny; Hernández-García, Carlos; Hickstein, Daniel D.; Zusin, Dmitriy; Gentry, Christian; Dollar, Franklin J.; Mancuso, Christopher A.; Hogle, Craig W.; Kfir, Ofer; Legut, Dominik; Carva, Karel; Ellis, Jennifer L.; Dorney, Kevin M.; Chen, Cong; Shpyrko, Oleg G.; Fullerton, Eric E.; Cohen, Oren; Oppeneer, Peter M.; Milošević, Dejan B.; Becker, Andreas; Jaroń-Becker, Agnieszka A.; Popmintchev, Tenio; Murnane, Margaret M.; Kapteyn, Henry C.

2015-01-01

We demonstrate, to our knowledge, the first bright circularly polarized high-harmonic beams in the soft X-ray region of the electromagnetic spectrum, and use them to implement X-ray magnetic circular dichroism measurements in a tabletop-scale setup. Using counterrotating circularly polarized laser fields at 1.3 and 0.79 µm, we generate circularly polarized harmonics with photon energies exceeding 160 eV. The harmonic spectra emerge as a sequence of closely spaced pairs of left and right circularly polarized peaks, with energies determined by conservation of energy and spin angular momentum. We explain the single-atom and macroscopic physics by identifying the dominant electron quantum trajectories and optimal phase-matching conditions. The first advanced phase-matched propagation simulations for circularly polarized harmonics reveal the influence of the finite phase-matching temporal window on the spectrum, as well as the unique polarization-shaped attosecond pulse train. Finally, we use, to our knowledge, the first tabletop X-ray magnetic circular dichroism measurements at the N4,5 absorption edges of Gd to validate the high degree of circularity, brightness, and stability of this light source. These results demonstrate the feasibility of manipulating the polarization, spectrum, and temporal shape of high harmonics in the soft X-ray region by manipulating the driving laser waveform. PMID:26534992

Structure Damage Simulations Accounting for Inertial Effects and Impact and Optimization of Grid-Stiffened Non-Circular Shells

NASA Technical Reports Server (NTRS)

Mei, Chuh; Jaunky, Navin

1999-01-01

The goal of this research project is to develop modelling and analysis strategy for the penetration of aluminium plates impacted by titanium impactors. Finite element analysis is used to study the penetration of aluminium plates impacted by titanium impactors in order to study the effect of such uncontained engine debris impacts on aircraft-like skin panels. LS-DYNA3D) is used in the simulations to model the impactor, test fixture frame and target barrier plate. The effects of mesh refinement, contact modeling, and impactor initial velocity and orientation were studied. The research project also includes development of a design tool for optimum design of grid-stiffened non-circular shells or panels subjected to buckling.

Morphometric analysis of Martian valley network basins using a circularity function

NASA Astrophysics Data System (ADS)

Luo, Wei; Howard, Alan D.

2005-12-01

This paper employs a circularity function to quantify the internal morphology of Martian watershed basins in Margaritifer Sinus region and to infer the primary erosional processes that led to their current geomorphologic characteristics and possible climatic conditions under which these processes operated. The circularity function describes the elongation of a watershed basin at different elevations. We have used the circularity functions of terrestrial basins that were interpreted as having been modified by (1) erosion related to primarily groundwater sapping and (2) erosion related to primarily rainfall and surface run-off, as well as the circularity functions of cratering basins on the Moon, in order to formulate discriminant functions that are able to separate the three types of landforms. The spatial pattern of the classification of Martian basins based on discriminant functions shows that basins that look morphologically similar to terrestrial fluvial basins are mostly clustered near the mainstream at low elevation, while those that look morphologically similar to terrestrial basins interpreted as groundwater sapping origin are located near the tributaries and at higher elevation. There are more of the latter than the former. This spatial distribution is inconsistent with a continuous Earth-like warm and wet climate for early Mars. Instead, it is more aligned with an overall early dry climate punctuated with episodic wet periods. Alternatively, the concentrated erosion in the mainstream could also be caused by a change of water source from rainfall to snowfall or erosion cut through a duricrust layer.

Ecoregion and land-use influence invertebrate and detritus transport from headwater streams

Treesearch

Christopher A. Binckley; Mark S. Wipfli; R. Bruce Medhurst; Karl Polivka; Paul Hessburg; R. Brion Salter; Joshua Y. Kill

2010-01-01

We quantified the downstream transport of invertebrates, organic matter and inorganic sediment from 60 fishless headwater streams in the Wenatchee River Basin located on the eastern slope of the Cascade Range in Washington, U.S.A. Streams were classified into four groups (each n = 15) based on their position within two ecological subregions (wet and dry) and the extent...

Combined use of thermal methods and seepage meters to efficiently locate, quantify, and monitor focused groundwater discharge to a sand-bed stream

USGS Publications Warehouse

Rosenberry, Donald O.; Briggs, Martin A.; Delin, Geoffrey N.; Hare, Danielle K.

2016-01-01

Quantifying flow of groundwater through streambeds often is difficult due to the complexity of aquifer-scale heterogeneity combined with local-scale hyporheic exchange. We used fiber-optic distributed temperature sensing (FO-DTS), seepage meters, and vertical temperature profiling to locate, quantify, and monitor areas of focused groundwater discharge in a geomorphically simple sand-bed stream. This combined approach allowed us to rapidly focus efforts at locations where prodigious amounts of groundwater discharged to the Quashnet River on Cape Cod, Massachusetts, northeastern USA. FO-DTS detected numerous anomalously cold reaches one to several m long that persisted over two summers. Seepage meters positioned upstream, within, and downstream of 7 anomalously cold reaches indicated that rapid groundwater discharge occurred precisely where the bed was cold; median upward seepage was nearly 5 times faster than seepage measured in streambed areas not identified as cold. Vertical temperature profilers deployed next to 8 seepage meters provided diurnal-signal-based seepage estimates that compared remarkably well with seepage-meter values. Regression slope and R2 values both were near 1 for seepage ranging from 0.05 to 3.0 m d−1. Temperature-based seepage model accuracy was improved with thermal diffusivity determined locally from diurnal signals. Similar calculations provided values for streambed sediment scour and deposition at subdaily resolution. Seepage was strongly heterogeneous even along a sand-bed river that flows over a relatively uniform sand and fine-gravel aquifer. FO-DTS was an efficient method for detecting areas of rapid groundwater discharge, even in a strongly gaining river, that can then be quantified over time with inexpensive streambed thermal methods.

Evaluation of Side Stream Filtration Technology at Oak Ridge National Laboratory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Boyd, Brian K.

2014-08-01

This technology evaluation was performed by Pacific Northwest National Laboratory and Oak Ridge National Laboratory on behalf of the Federal Energy Management Program. The objective was to quantify the benefits side stream filtration provides to a cooling tower system. The evaluation assessed the performance of an existing side stream filtration system at a cooling tower system at Oak Ridge National Laboratory’s Spallation Neutron Source research facility. This location was selected because it offered the opportunity for a side-by-side comparison of a system featuring side stream filtration and an unfiltered system.

Variation of linear and circular polarization persistence for changing field of view and collection area in a forward scattering environment

NASA Astrophysics Data System (ADS)

van der Laan, John D.; Wright, Jeremy B.; Scrymgeour, David A.; Kemme, Shanalyn A.; Dereniak, Eustace L.

2016-05-01

We present experimental and simulation results for a laboratory-based forward-scattering environment, where 1 μm diameter polystyrene spheres are suspended in water to model the optical scattering properties of fog. Circular polarization maintains its degree of polarization better than linear polarization as the optical thickness of the scattering environment increases. Both simulation and experiment quantify circular polarization's superior persistence, compared to that of linear polarization, and show that it is much less affected by variations in the field of view and collection area of the optical system. Our experimental environment's lateral extent was physically finite, causing a significant difference between measured and simulated degree of polarization values for incident linearly polarized light, but not for circularly polarized light. Through simulation we demonstrate that circular polarization is less susceptible to the finite environmental extent as well as the collection optic's limiting configuration.

Bright circularly polarized soft X-ray high harmonics for X-ray magnetic circular dichroism

DOE PAGES

Fan, Tingting; Grychtol, Patrik; Knut, Ronny; ...

2015-11-03

Here, we demonstrate, to our knowledge, the first bright circularly polarized high-harmonic beams in the soft X-ray region of the electromagnetic spectrum, and use them to implement X-ray magnetic circular dichroism measurements in a tabletop-scale setup. Using counterrotating circularly polarized laser fields at 1.3 and 0.79 µm, we generate circularly polarized harmonics with photon energies exceeding 160 eV. The harmonic spectra emerge as a sequence of closely spaced pairs of left and right circularly polarized peaks, with energies determined by conservation of energy and spin angular momentum. We explain the single-atom and macroscopic physics by identifying the dominant electron quantummore » trajectories and optimal phase-matching conditions. The first advanced phase-matched propagation simulations for circularly polarized harmonics reveal the influence of the finite phase-matching temporal window on the spectrum, as well as the unique polarization-shaped attosecond pulse train. Finally, we use, to our knowledge, the first tabletop X-ray magnetic circular dichroism measurements at the N 4,5 absorption edges of Gd to validate the high degree of circularity, brightness, and stability of this light source. These results demonstrate the feasibility of manipulating the polarization, spectrum, and temporal shape of high harmonics in the soft X-ray region by manipulating the driving laser waveform.« less

Identification of Novel Long Non-coding and Circular RNAs in Human Papillomavirus-Mediated Cervical Cancer

PubMed Central

Wang, Hongbo; Zhao, Yingchao; Chen, Mingyue; Cui, Jie

2017-01-01

Cervical cancer is the third most common cancer worldwide and the fourth leading cause of cancer-associated mortality in women. Accumulating evidence indicates that long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) may play key roles in the carcinogenesis of different cancers; however, little is known about the mechanisms of lncRNAs and circRNAs in the progression and metastasis of cervical cancer. In this study, we explored the expression profiles of lncRNAs, circRNAs, miRNAs, and mRNAs in HPV16 (human papillomavirus genotype 16) mediated cervical squamous cell carcinoma and matched adjacent non-tumor (ATN) tissues from three patients with high-throughput RNA sequencing (RNA-seq). In total, we identified 19 lncRNAs, 99 circRNAs, 28 miRNAs, and 304 mRNAs that were commonly differentially expressed (DE) in different patients. Among the non-coding RNAs, 3 lncRNAs and 44 circRNAs are novel to our knowledge. Functional enrichment analysis showed that DE lncRNAs, miRNAs, and mRNAs were enriched in pathways crucial to cancer as well as other gene ontology (GO) terms. Furthermore, the co-expression network and function prediction suggested that all 19 DE lncRNAs could play different roles in the carcinogenesis and development of cervical cancer. The competing endogenous RNA (ceRNA) network based on DE coding and non-coding RNAs showed that each miRNA targeted a number of lncRNAs and circRNAs. The link between part of the miRNAs in the network and cervical cancer has been validated in previous studies, and these miRNAs targeted the majority of the novel non-coding RNAs, thus suggesting that these novel non-coding RNAs may be involved in cervical cancer. Taken together, our study shows that DE non-coding RNAs could be further developed as diagnostic and therapeutic biomarkers of cervical cancer. The complex ceRNA network also lays the foundation for future research of the roles of coding and non-coding RNAs in cervical cancer. PMID:28970820

Circular epidemiology.

PubMed

Kuller, L H

1999-11-01

Circular epidemiology can be defined as the continuation of specific types of epidemiologic studies beyond the point of reasonable doubt of the true existence of an important association or the absence of such an association. Circular epidemiology is an extreme example of studies of the consistency of associations. A basic problem for epidemiology is the lack of a systematic approach to acquiring new knowledge to reach a goal of improving public health and preventive medicine. For epidemiologists, research support unfortunately is biased toward the continued study of already proven hypotheses. Circular epidemiology, however, freezes at one point in the evolution of epidemiologic studies, failing to move from descriptive to analytical case-control and longitudinal studies, for example, to experimental, clinical trials. Good epidemiology journals are filled with very well-conducted epidemiologic studies that primarily repeat the obvious or are variations on the theme.

The Maximal C³ Self-Complementary Trinucleotide Circular Code X in Genes of Bacteria, Archaea, Eukaryotes, Plasmids and Viruses.

PubMed

Michel, Christian J

2017-04-18

In 1996, a set X of 20 trinucleotides was identified in genes of both prokaryotes and eukaryotes which has on average the highest occurrence in reading frame compared to its two shifted frames. Furthermore, this set X has an interesting mathematical property as X is a maximal C 3 self-complementary trinucleotide circular code. In 2015, by quantifying the inspection approach used in 1996, the circular code X was confirmed in the genes of bacteria and eukaryotes and was also identified in the genes of plasmids and viruses. The method was based on the preferential occurrence of trinucleotides among the three frames at the gene population level. We extend here this definition at the gene level. This new statistical approach considers all the genes, i.e., of large and small lengths, with the same weight for searching the circular code X . As a consequence, the concept of circular code, in particular the reading frame retrieval, is directly associated to each gene. At the gene level, the circular code X is strengthened in the genes of bacteria, eukaryotes, plasmids, and viruses, and is now also identified in the genes of archaea. The genes of mitochondria and chloroplasts contain a subset of the circular code X . Finally, by studying viral genes, the circular code X was found in DNA genomes, RNA genomes, double-stranded genomes, and single-stranded genomes.

Tables for Supersonic Flow of Helium Around Right Circular Cones at Zero Angle of Attack

NASA Technical Reports Server (NTRS)

Sims, J. L.

1973-01-01

The results of the calculation of supersonic flow of helium about right circular cones at zero angle of attack are presented in tabular form. The calculations were performed using the Taylor-Maccoll theory. Numerical integrations were performed using a Runge-Kutta method for second-order differential equations. Results were obtained for cone angles from 2.5 to 30 degrees in regular increments of 2.5 degrees. In all calculations the desired free-stream Mach number was obtained to five or more significant figures.

Spatial patterns of water-dispersed seed deposition along stream riparian gradients

PubMed Central

Moinier, Sophie; van Gogh, Iris; Timmers, Robert; van Deelen, Joost J.; Verhoeven, Jos T. A.; Soons, Merel B.

2017-01-01

Riparian ecosystems along streams naturally harbour a high plant diversity with many increasingly endangered species. In our current heavily modified and fragmented catchments, many of these species are sensitive to dispersal limitation. Better understanding of riparian plant dispersal pathways is required to predict species (re-)colonization potential and improve success rates of stream and riparian zone conservation and restoration. Dispersal by water (hydrochory) is an important mechanism for longitudinal and lateral dispersal of riparian species. Crucially for recruitment potential, it also influences the elevation along the riparian hydrological gradient where seeds become deposited. Due to the complex interplay between abiotic and biotic factors, however, it remains unclear how exactly patterns in seed deposition are formed. We compared hydrochorous and non-hydrochorous seed deposition, and quantified patterns of seed deposition along the bare substrate of newly created stream riparian gradients. Water levels were monitored and seed deposition was measured with seed traps along the full range of riparian hydrological conditions (from permanently flooded to never flooded). Average seed numbers and species richness were significantly higher in flooded than in non-flooded seed traps (5.7 and 1.5 times higher, respectively). Community-weighted trait means indicated that typically water-dispersed seeds were more dominant in flooded than in non-flooded seed traps and gradually decreased in concentration from the channel to the upland. Moreover, highly buoyant seeds accumulated at the average water line, and clear elevational sorting of non-buoyant seeds occurred within the floodplain. These results establish a critical role of flooding in shaping patterns of seed deposition along the riparian gradient, delivering many seeds of typical riparian species to riparian zones and depositing them at species-specific elevations as influenced by seed traits, suggesting

Similarity of Stream Width Distributions Across Headwater Systems

NASA Astrophysics Data System (ADS)

Allen, G. H.; Pavelsky, T.; Barefoot, E. A.; Tashie, A.; Butman, D. E.

2016-12-01

The morphology and abundance of streams control the rates of hydraulic and biogeochemical exchange between streams, groundwater, and the atmosphere. In large river systems, studies have used remote sensing to quantify river morphology, and have found that the relationship between river width and abundance is fractal, such that narrow rivers are proportionally more common than wider rivers. However, in headwater systems (stream order 1-3), where many biogeochemical reactions are most rapid, the relationship between stream width and abundance is unknown, reducing the certainty of biogeochemical flux estimates. To constrain this uncertainty, we surveyed two components of stream morphology (wetted stream width and length) in seven physiographically contrasting stream networks in Kings Creek in Konza Prarie, KS; Sagehen Creek in the N. Sierra Nevada Mtns., CA; Elder Creek in Angelo Coast Range Preserve, CA; Caribou Creek in the Caribou Poker Creek Research Watershed, AK; V40 Stream, NZ; Blue Duck Creek, NZ; Stony Creek in Duke Forest, NC. To assess temporal variations, we also surveyed stream geometry in a subcatchment of Stony Creek six times over a range of moderate streamflow conditions (discharge less than 90 percentile of gauge record). Here we show a strikingly consistent gamma statistical distribution of stream width in all surveys and a characteristic most abundant stream width of 32±7 cm independent of flow conditions or basin size. This consistency is remarkable given the substantial physical diversity among the studied catchments. We propose a model that invokes network topology theory and downstream hydraulic geometry to show that, as active drainage networks expand and contract in response to changes in streamflow, the most abundant stream width remains approximately static. This framework can be used to better extrapolate stream size and abundance from large rivers to small headwater streams, with significant impact on understanding of the hydraulic

Compact waveguide circular polarizer

DOEpatents

Tantawi, Sami G.

2016-08-16

A multi-port waveguide is provided having a rectangular waveguide that includes a Y-shape structure with first top arm having a first rectangular waveguide port, a second top arm with second rectangular waveguide port, and a base arm with a third rectangular waveguide port for supporting a TE.sub.10 mode and a TE.sub.20 mode, where the end of the third rectangular waveguide port includes rounded edges that are parallel to a z-axis of the waveguide, a circular waveguide having a circular waveguide port for supporting a left hand and a right hand circular polarization TE.sub.11 mode and is coupled to a base arm broad wall, and a matching feature disposed on the base arm broad wall opposite of the circular waveguide for terminating the third rectangular waveguide port, where the first rectangular waveguide port, the second rectangular waveguide port and the circular waveguide port are capable of supporting 4-modes of operation.

Acoustic streaming induced by two orthogonal ultrasound standing waves in a microfluidic channel.

PubMed

Doinikov, Alexander A; Thibault, Pierre; Marmottant, Philippe

2018-07-01

A mathematical model is derived for acoustic streaming in a microfluidic channel confined between a solid wall and a rigid reflector. Acoustic streaming is produced by two orthogonal ultrasound standing waves of the same frequency that are created by two pairs of counter-propagating leaky surface waves induced in the solid wall. The magnitudes and phases of the standing waves are assumed to be different. Full analytical solutions are found for the equations of acoustic streaming. The obtained solutions are used in numerical simulations to reveal the structure of the acoustic streaming. It is shown that the interaction of two standing waves leads to the appearance of a cross term in the equations of acoustic streaming. If the phase lag between the standing waves is nonzero, the cross term brings about circular vortices with rotation axes perpendicular to the solid wall of the channel. The vortices make fluid particles rotate and move alternately up and down between the solid wall and the reflector. The obtained results are of immediate interest for acoustomicrofluidic applications such as the ultrasonic micromixing of fluids and the manipulation of microparticles. Copyright © 2018 Elsevier B.V. All rights reserved.

[Circular migration in Indonesia].

PubMed

Mantra, I B

1979-12-01

The author examines circular migration in Indonesia, with primary focus on the 1970s. It is found that circular, or repeated return migration, generally occurs over short distances and for short periods and is more frequent than lifetime migration. The relationships between improvements in the national transport system, access to labor force opportunities in both the formal and informal sectors of the economy, and circular migration are discussed.

Foxo3 activity promoted by non-coding effects of circular RNA and Foxo3 pseudogene in the inhibition of tumor growth and angiogenesis.

PubMed

Yang, W; Du, W W; Li, X; Yee, A J; Yang, B B

2016-07-28

It has recently been shown that the upregulation of a pseudogene specific to a protein-coding gene could function as a sponge to bind multiple potential targeting microRNAs (miRNAs), resulting in increased gene expression. Similarly, it was recently demonstrated that circular RNAs can function as sponges for miRNAs, and could upregulate expression of mRNAs containing an identical sequence. Furthermore, some mRNAs are now known to not only translate protein, but also function to sponge miRNA binding, facilitating gene expression. Collectively, these appear to be effective mechanisms to ensure gene expression and protein activity. Here we show that expression of a member of the forkhead family of transcription factors, Foxo3, is regulated by the Foxo3 pseudogene (Foxo3P), and Foxo3 circular RNA, both of which bind to eight miRNAs. We found that the ectopic expression of the Foxo3P, Foxo3 circular RNA and Foxo3 mRNA could all suppress tumor growth and cancer cell proliferation and survival. Our results showed that at least three mechanisms are used to ensure protein translation of Foxo3, which reflects an essential role of Foxo3 and its corresponding non-coding RNAs.

Development of the Hydroecological Integrity Assessment Process for Determining Environmental Flows for New Jersey Streams

USGS Publications Warehouse

Kennen, Jonathan G.; Henriksen, James A.; Nieswand, Steven P.

2007-01-01

The natural flow regime paradigm and parallel stream ecological concepts and theories have established the benefits of maintaining or restoring the full range of natural hydrologic variation for physiochemical processes, biodiversity, and the evolutionary potential of aquatic and riparian communities. A synthesis of recent advances in hydroecological research coupled with stream classification has resulted in a new process to determine environmental flows and assess hydrologic alteration. This process has national and international applicability. It allows classification of streams into hydrologic stream classes and identification of a set of non-redundant and ecologically relevant hydrologic indices for 10 critical sub-components of flow. Three computer programs have been developed for implementing the Hydroecological Integrity Assessment Process (HIP): (1) the Hydrologic Indices Tool (HIT), which calculates 171 ecologically relevant hydrologic indices on the basis of daily-flow and peak-flow stream-gage data; (2) the New Jersey Hydrologic Assessment Tool (NJHAT), which can be used to establish a hydrologic baseline period, provide options for setting baseline environmental-flow standards, and compare past and proposed streamflow alterations; and (3) the New Jersey Stream Classification Tool (NJSCT), designed for placing unclassified streams into pre-defined stream classes. Biological and multivariate response models including principal-component, cluster, and discriminant-function analyses aided in the development of software and implementation of the HIP for New Jersey. A pilot effort is currently underway by the New Jersey Department of Environmental Protection in which the HIP is being used to evaluate the effects of past and proposed surface-water use, ground-water extraction, and land-use changes on stream ecosystems while determining the most effective way to integrate the process into ongoing regulatory programs. Ultimately, this scientifically defensible

Roughness, resistance, and dispersion: Relationships in small streams

NASA Astrophysics Data System (ADS)

Noss, Christian; Lorke, Andreas

2016-04-01

Although relationships between roughness, flow, and transport processes in rivers and streams have been investigated for several decades, the prediction of flow resistance and longitudinal dispersion in small streams is still challenging. Major uncertainties in existing approaches for quantifying flow resistance and longitudinal dispersion at the reach scale arise from limitations in the characterization of riverbed roughness. In this study, we characterized the riverbed roughness in small moderate-gradient streams (0.1-0.5% bed slope) and investigated its effects on flow resistance and dispersion. We analyzed high-resolution transect-based measurements of stream depth and width, which resolved the complete roughness spectrum with scales ranging from the micro to the reach scale. Independently measured flow resistance and dispersion coefficients were mainly affected by roughness at spatial scales between the median grain size and the stream width, i.e., by roughness between the micro- and the mesoscale. We also compared our flow resistance measurements with calculations using various flow resistance equations. Flow resistance in our study streams was well approximated by the equations that were developed for high gradient streams (>1%) and it was overestimated by approaches developed for sand-bed streams with a smooth riverbed or ripple bed. This article was corrected on 10 MAY 2016. See the end of the full text for details.

Endogenous and exogenous control of ecosystem function: N cycling in headwater streams.

PubMed

Valett, H M; Thomas, S A; Mulholland, P J; Webster, J R; Dahm, C N; Fellows, C S; Crenshaw, C L; Peterson, C G

2008-12-01

Allochthonous inputs act as resource subsidies to many ecosystems, where they exert strong influences on metabolism and material cycling. At the same time, metabolic theory proposes endogenous thermal control independent of resource supply. To address the relative importance of exogenous and endogenous influences, we quantified spatial and temporal variation in ecosystem metabolism and nitrogen (N) uptake using seasonal releases of 15N as nitrate in six streams differing in riparian-stream interaction and metabolic character. Nitrate removal was quantified using a nutrient spiraling approach based on measurements of downstream decline in 15N flux. Respiration (R) and gross primary production (GPP) were measured with whole-stream diel oxygen budgets. Uptake and metabolism metrics were addressed as z scores relative to site means to assess temporal variation. In open-canopied streams, areal uptake (U; microg N x m(-2) x s(-1)) was closely related to GPP, metabolic rates increased with temperature, and R was accurately predicted by metabolic scaling relationships. In forested streams, N spiraling was not related to GPP; instead, uptake velocity (v(f); mm/s) was closely related to R. In contrast to open-canopied streams, N uptake and metabolic activity were negatively correlated to temperature and poorly described by scaling laws. We contend that streams differ along a gradient of exogenous and endogenous control that relates to the relative influences of resource subsidies and in-stream energetics as determinants of seasonal patterns of metabolism and N cycling. Our research suggests that temporal variation in the propagation of ecological influence between adjacent systems generates phases when ecosystems are alternatively characterized as endogenously and exogenously controlled.

5 CFR 1310.5 - List of current circulars.

Code of Federal Regulations, 2013 CFR

2013-01-01

... Principles for Non-Profit Organizations” A-123—“Management Accountability and Control” A-125—“Prompt Payment... Organizations” A-134—“Financial Accounting Principles and Standards” A-135—“Management of Federal Advisory... 1310.5 Administrative Personnel OFFICE OF MANAGEMENT AND BUDGET OMB DIRECTIVES OMB CIRCULARS § 1310.5...

5 CFR 1310.5 - List of current circulars.

Code of Federal Regulations, 2012 CFR

2012-01-01

... Principles for Non-Profit Organizations” A-123—“Management Accountability and Control” A-125—“Prompt Payment... Organizations” A-134—“Financial Accounting Principles and Standards” A-135—“Management of Federal Advisory... 1310.5 Administrative Personnel OFFICE OF MANAGEMENT AND BUDGET OMB DIRECTIVES OMB CIRCULARS § 1310.5...

5 CFR 1310.5 - List of current circulars.

Code of Federal Regulations, 2014 CFR

2014-01-01

... Principles for Non-Profit Organizations” A-123—“Management Accountability and Control” A-125—“Prompt Payment... Organizations” A-134—“Financial Accounting Principles and Standards” A-135—“Management of Federal Advisory... 1310.5 Administrative Personnel OFFICE OF MANAGEMENT AND BUDGET OMB DIRECTIVES OMB CIRCULARS § 1310.5...

5 CFR 1310.5 - List of current circulars.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 1310.5 Administrative Personnel OFFICE OF MANAGEMENT AND BUDGET OMB DIRECTIVES OMB CIRCULARS § 1310.5...-11—“Preparation and Submission of Budget Estimates” (Part 1) “Preparation and Submission of Strategic... Principles for Non-Profit Organizations” A-123—“Management Accountability and Control” A-125—“Prompt Payment...

SCIENCE TO INFORM POLICY ON PROTECTION OF HEADWATER STREAMS

EPA Science Inventory

Recent court cases concerning the definition of jurisdictional waters under the Clean Water Act have illuminated a need to better understand characteristics and functions of headwater streams (and associated riparian and wetland habitats). Research is needed to better quantify 1...

Regional bankfull-channel dimensions of non-urban wadeable streams in Indiana

USGS Publications Warehouse

Robinson, Bret A.

2013-01-01

During floods, damage to properties and community infrastructure may result from inundation and the processes of erosion. The damages imparted by erosion are collectively termed the fluvial erosion hazard (FEH), and the Indiana Silver Jackets Multi-agency Hazard Mitigation Taskforce is supporting a program to build tools that will assist Indiana property owners and communities with FEH-mitigation efforts. As part of that program, regional channel-dimension relations are identified for non-urban wadeable streams in Indiana. With a site-selection process that targeted the three largest physiographic regions of the state, field work was completed to measure channel-dimension and channel-geometry characteristics across Indiana. In total, 82 sites were identified for data collection; 25 in the Northern Moraine and Lake region, 31 in the Central Till Plain region, and 26 in the Southern Hills and Lowlands region. Following well established methods, for each data-collection site, effort was applied to identify bankfull stage, determine bankfull-channel dimensions, and document channel-geometry characteristics that allowed for determinations of channel classification. In this report, regional bankfull-channel dimension results are presented as a combination of plots and regression equations that identify the relations between drainage area and the bankfull-channel dimensions of width, mean depth, and cross-sectional area. This investigation found that the channel-dimension data support independent relations for each of the three physiographic regions noted above. Furthermore, these relations show that, for any given drainage area, northern Indiana channels have the smallest predicted dimensions, southern Indiana channels have the largest predicted dimensions, and central Indiana channels are intermediate in their predicted dimensions. When considering the suite of variables that influence bankfull-channel dimensions, it appears that contrasting runoff characteristics

A Theoretical Understanding of Circular Polarization Memory in Random Media

NASA Astrophysics Data System (ADS)

Dark, Julia

Radiative transport theory describes the propagation of light in random media that absorb, scatter, and emit radiation. To describe the propagation of light, the full polarization state is quantified using the Stokes parameters. For the sake of mathematical convenience, the polarization state of light is often neglected leading to the scalar radiative transport equation for the intensity only. For scalar transport theory, there is a well-established body of literature on numerical and analytic approximations to the radiative transport equation. We extend the scalar theory to the vector radiative transport equation (vRTE). In particular, we are interested in the theoretical basis for a phenomena called circular polarization memory. Circular polarization memory is the physical phenomena whereby circular polarization retains its ellipticity and handedness when propagating in random media. This is in contrast to the propagation of linear polarization in random media, which depolarizes at a faster rate, and specular reflection of circular polarization, whereby the circular polarization handedness flips. We investigate two limits that are of known interest in the phenomena of circular polarization memory. The first limit we investigate is that of forward-peaked scattering, i.e. the limit where most scattering events occur in the forward or near-forward directions. The second limit we consider is that of strong scattering and weak absorption. In the forward-peaked scattering limit we approximate the vRTE by a system of partial differential equations motivated by the scalar Fokker-Planck approximation. We call the leading order approximation the vector Fokker-Planck approximation. The vector Fokker Planck approximation predicts that strongly forward-peaked media exhibit circular polarization memory where the strength of the effect can be calculated from the expansion of the scattering matrix in special functions. In addition, we find in this limit that total intensity

Potential population and assemblage influences of non-native trout on native nongame fish in Nebraska headwater streams

USGS Publications Warehouse

Turek, Kelly C.; Pegg, Mark A.; Pope, Kevin L.; Schainost, Steve

2014-01-01

Non-native trout are currently stocked to support recreational fisheries in headwater streams throughout Nebraska. The influence of non-native trout introductions on native fish populations and their role in structuring fish assemblages in these systems is unknown. The objectives of this study were to determine (i) if the size structure or relative abundance of native fish differs in the presence and absence of non-native trout, (ii) if native fish-assemblage structure differs in the presence and absence of non-native trout and (iii) if native fish-assemblage structure differs across a gradient in abundances of non-native trout. Longnose dace Rhinichthys cataractae were larger in the presence of brown trout Salmo trutta and smaller in the presence of rainbow trout Oncorhynchus mykiss compared to sites without trout. There was also a greater proportion of larger white suckers Catostomus commersonii in the presence of brown trout. Creek chub Semotilus atromaculatus and fathead minnow Pimephales promelas size structures were similar in the presence and absence of trout. Relative abundances of longnose dace, white sucker, creek chub and fathead minnow were similar in the presence and absence of trout, but there was greater distinction in native fish-assemblage structure between sites with trout compared to sites without trout as trout abundances increased. These results suggest increased risk to native fish assemblages in sites with high abundances of trout. However, more research is needed to determine the role of non-native trout in structuring native fish assemblages in streams, and the mechanisms through which introduced trout may influence native fish populations.

A Wideband Circularly Polarized Antenna with a Multiple-Circular-Sector Dielectric Resonator.

PubMed

Trinh-Van, Son; Yang, Youngoo; Lee, Kang-Yoon; Hwang, Keum Cheol

2016-11-03

This paper presents the design of a wideband circularly polarized antenna using a multiple-circular-sector dielectric resonator (DR). The DR is composed of twelve circular-sector DRs with identical central angles of 30 ∘ but with different radii. A genetic algorithm is utilized to optimize the radii of the twelve circular-sector DRs to realize wideband circular polarization. The proposed antenna is excited using an aperture-coupled feeding technique through a narrow rectangular slot etched onto the ground plane. An antenna prototype is experimentally verified. The measured -10 dB reflection and 3 dB axial ratio (AR) bandwidths are 31.39% (1.88-2.58 GHz) and 19.30% (2.06-2.50 GHz), respectively, covering the operating bands of the following systems: UMTS-2100 (2.145 GHz), WiMAX (2.3 GHz), and Wi-Fi (2.445 GHz). A measured peak gain of 7.65 dBic at 2.225 GHz and gain variation of less than 2.70 dBic within the measured 3 dB AR bandwidth are achieved. In addition, the radiation patterns of the proposed antenna are presented and discussed.

A Wideband Circularly Polarized Antenna with a Multiple-Circular-Sector Dielectric Resonator

PubMed Central

Trinh-Van, Son; Yang, Youngoo; Lee, Kang-Yoon; Hwang, Keum Cheol

2016-01-01

This paper presents the design of a wideband circularly polarized antenna using a multiple-circular-sector dielectric resonator (DR). The DR is composed of twelve circular-sector DRs with identical central angles of 30∘ but with different radii. A genetic algorithm is utilized to optimize the radii of the twelve circular-sector DRs to realize wideband circular polarization. The proposed antenna is excited using an aperture-coupled feeding technique through a narrow rectangular slot etched onto the ground plane. An antenna prototype is experimentally verified. The measured −10 dB reflection and 3 dB axial ratio (AR) bandwidths are 31.39% (1.88–2.58 GHz) and 19.30% (2.06–2.50 GHz), respectively, covering the operating bands of the following systems: UMTS-2100 (2.145 GHz), WiMAX (2.3 GHz), and Wi-Fi (2.445 GHz). A measured peak gain of 7.65 dBic at 2.225 GHz and gain variation of less than 2.70 dBic within the measured 3 dB AR bandwidth are achieved. In addition, the radiation patterns of the proposed antenna are presented and discussed. PMID:27827881

Tracing Nitrate Contributions to Streams During Varying Flow Regimes at the Sleepers River Research Watershed, Vermont, USA

NASA Astrophysics Data System (ADS)

Sebestyen, S. D.; Shanley, J. B.; Boyer, E. W.; Ohte, N.; Doctor, D. H.; Kendall, C.

2003-12-01

Quantifying sources and transformations of nitrate in headwater catchments is fundamental to understanding the movement of nitrogen to streams. At the Sleepers River Research Watershed in northeastern Vermont (USA), we are using multiple chemical tracer and mixing model approaches to quantify sources and transport of nitrate to streams under varying flow regimes. We sampled streams, lysimeters, and wells at nested locations from the headwaters to the outlet of the 41 ha W-9 watershed under the entire range of flow regimes observed throughout 2002-2003, including baseflow and multiple events (stormflow and snowmelt). Our results suggest that nitrogen sources, and consequently stream nitrate concentrations, are rapidly regenerated during several weeks of baseflow and nitrogen is flushed from the watershed by stormflow events that follow baseflow periods. Both basic chemistry data (anions, cations, & dissolved organic carbon) and isotopic data (nitrate, dissolved organic carbon, and dissolved inorganic carbon) indicate that nitrogen source contributions vary depending upon the extent of saturation in the watershed, the initiation of shallow subsurface water inputs, and other hydrological processes. Stream nitrate concentrations typically peak with discharge and are higher on the falling than the rising limb of the hydrograph. Our data also indicate the importance of terrestrial and aquatic biogeochemical processes, in addition to hydrological connectivity in controlling how nitrate moves from the terrestrial landscape to streams. Our detailed sampling data from multiple flow regimes are helping to identify and quantify the "hot spots" and "hot moments" of biogeochemical and hydrological processes that control nitrogen fluxes in streams.

Quantifiers more or less quantify online: ERP evidence for partial incremental interpretation

PubMed Central

Urbach, Thomas P.; Kutas, Marta

2010-01-01

Event-related brain potentials were recorded during RSVP reading to test the hypothesis that quantifier expressions are incrementally interpreted fully and immediately. In sentences tapping general knowledge (Farmers grow crops/worms as their primary source of income), Experiment 1 found larger N400s for atypical (worms) than typical objects (crops). Experiment 2 crossed object typicality with non-logical subject-noun phrase quantifiers (most, few). Off-line plausibility ratings exhibited the crossover interaction predicted by full quantifier interpretation: Most farmers grow crops and Few farmers grow worms were rated more plausible than Most farmers grow worms and Few farmers grow crops. Object N400s, although modulated in the expected direction, did not reverse. Experiment 3 replicated these findings with adverbial quantifiers (Farmers often/rarely grow crops/worms). Interpretation of quantifier expressions thus is neither fully immediate nor fully delayed. Furthermore, object atypicality was associated with a frontal slow positivity in few-type/rarely quantifier contexts, suggesting systematic processing differences among quantifier types. PMID:20640044

The Maximal C3 Self-Complementary Trinucleotide Circular Code X in Genes of Bacteria, Archaea, Eukaryotes, Plasmids and Viruses

PubMed Central

Michel, Christian J.

2017-01-01

In 1996, a set X of 20 trinucleotides was identified in genes of both prokaryotes and eukaryotes which has on average the highest occurrence in reading frame compared to its two shifted frames. Furthermore, this set X has an interesting mathematical property as X is a maximal C3 self-complementary trinucleotide circular code. In 2015, by quantifying the inspection approach used in 1996, the circular code X was confirmed in the genes of bacteria and eukaryotes and was also identified in the genes of plasmids and viruses. The method was based on the preferential occurrence of trinucleotides among the three frames at the gene population level. We extend here this definition at the gene level. This new statistical approach considers all the genes, i.e., of large and small lengths, with the same weight for searching the circular code X. As a consequence, the concept of circular code, in particular the reading frame retrieval, is directly associated to each gene. At the gene level, the circular code X is strengthened in the genes of bacteria, eukaryotes, plasmids, and viruses, and is now also identified in the genes of archaea. The genes of mitochondria and chloroplasts contain a subset of the circular code X. Finally, by studying viral genes, the circular code X was found in DNA genomes, RNA genomes, double-stranded genomes, and single-stranded genomes. PMID:28420220

Non-coding effects of circular RNA CCDC66 promote colon cancer growth and metastasis

PubMed Central

Hsiao, Kuei-Yang; Lin, Ya-Chi; Gupta, Sachin Kumar; Chang, Ning; Yen, Laising; Sun, H. Sunny; Tsai, Shaw-Jenq

2018-01-01

Circular RNA (circRNA) is a class of non-coding RNA whose functions remain mostly unknown. Recent studies indicate circRNA may be involved in disease pathogenesis, but direct evidence is scarce. Here we characterize the functional role of a novel circRNA, circCCDC66, in colorectal cancer (CRC). RNA-Seq data from matched normal and tumor colon tissue samples identified numerous circRNAs specifically elevated in cancer cells, several of which were verified by quantitative RT-PCR. CircCCDC66 expression was elevated in polyps and colon cancer and was associated with poor prognosis. Gain-of-function and loss-of-function studies in CRC cell-lines demonstrated that circCCDC66 controlled multiple pathological processes, including cell proliferation, migration, invasion, and anchorage-independent growth. In-depth characterization revealed that circCCDC66 exerts its function via regulation of a subset of oncogenes, and knockdown of circCCDC66 inhibited tumor growth and cancer invasion in xenograft and orthotopic mouse models, respectively. Taken together, these findings highlight a novel oncogenic function of circRNA in cancer progression and metastasis. PMID:28249903

Circular array of stable atmospheric pressure microplasmas

NASA Astrophysics Data System (ADS)

Wu, C.; Zhang, Z.-B.; Hoskinson, A.; Hopwood, J.

2010-12-01

A circular array composed of six quarter-wavelength microstripline resonators sustains a stable ring-shaped microplasma in atmospheric pressure argon. A single power source (1 GHz, <5 W) drives all six resonators. The operation of the array is modeled by coupled mode theory (CMT) and confirmed by electromagnetic simulations. Non-uniformities in the plasma ring are attributed to parasitic plasma sheath capacitance and confirmed by CMT.

Imaging linear and circular polarization features in leaves with complete Mueller matrix polarimetry.

PubMed

Patty, C H Lucas; Luo, David A; Snik, Frans; Ariese, Freek; Buma, Wybren Jan; Ten Kate, Inge Loes; van Spanning, Rob J M; Sparks, William B; Germer, Thomas A; Garab, Győző; Kudenov, Michael W

2018-06-01

Spectropolarimetry of intact plant leaves allows to probe the molecular architecture of vegetation photosynthesis in a non-invasive and non-destructive way and, as such, can offer a wealth of physiological information. In addition to the molecular signals due to the photosynthetic machinery, the cell structure and its arrangement within a leaf can create and modify polarization signals. Using Mueller matrix polarimetry with rotating retarder modulation, we have visualized spatial variations in polarization in transmission around the chlorophyll a absorbance band from 650 nm to 710 nm. We show linear and circular polarization measurements of maple leaves and cultivated maize leaves and discuss the corresponding Mueller matrices and the Mueller matrix decompositions, which show distinct features in diattenuation, polarizance, retardance and depolarization. Importantly, while normal leaf tissue shows a typical split signal with both a negative and a positive peak in the induced fractional circular polarization and circular dichroism, the signals close to the veins only display a negative band. The results are similar to the negative band as reported earlier for single macrodomains. We discuss the possible role of the chloroplast orientation around the veins as a cause of this phenomenon. Systematic artefacts are ruled out as three independent measurements by different instruments gave similar results. These results provide better insight into circular polarization measurements on whole leaves and options for vegetation remote sensing using circular polarization. Copyright © 2018 The Author(s). Published by Elsevier B.V. All rights reserved.

Near shot-noise limited time-resolved circular dichroism pump-probe spectrometer

NASA Astrophysics Data System (ADS)

Stadnytskyi, Valentyn; Orf, Gregory S.; Blankenship, Robert E.; Savikhin, Sergei

2018-03-01

We describe an optical near shot-noise limited time-resolved circular dichroism (TRCD) pump-probe spectrometer capable of reliably measuring circular dichroism signals in the order of μdeg with nanosecond time resolution. Such sensitivity is achieved through a modification of existing TRCD designs and introduction of a new data processing protocol that eliminates approximations that have caused substantial nonlinearities in past measurements and allows the measurement of absorption and circular dichroism transients simultaneously with a single pump pulse. The exceptional signal-to-noise ratio of the described setup makes the TRCD technique applicable to a large range of non-biological and biological systems. The spectrometer was used to record, for the first time, weak TRCD kinetics associated with the triplet state energy transfer in the photosynthetic Fenna-Matthews-Olson antenna pigment-protein complex.

Environmental variability, historical contingency, and the structure of regional fish and macroinvertebrate faunas in Ouachita Mountain stream systems

Treesearch

Lance R. Williams; Christopher M. Taylor; Melvin L. Warren; J. Alan Clingenpeel

2003-01-01

In 1990-1992, the United States Forest Service sampled six hydrologically variable streams paired in three different drainage basins in the Ouachita Mountains, Arkansas, U.S.A. Fishes, macroinvertebrates, and stream environmental variables were quantified for each stream. We used these data to examine the relationship between regional faunas (based on taxonomy and...

Experimental and numerical investigation of Acoustic streaming (Eckart streaming)

NASA Astrophysics Data System (ADS)

Dridi, Walid; Botton, Valery; Henry, Daniel; Ben Hadid, Hamda

The application of sound waves in the bulk of a fluid can generate steady or quasi-steady flows reffered to as Acoustic streaming flows. We can distinguish two kind of acoustic streaming: The Rayleigh Streaming is generated when a standing acoustic waves interfere with solid walls to give birth to an acoustic boundary layer. Steady recirculations are then driven out of the boundary layer and can be used in micro-gravity, where the free convection is too weak or absent, to enhance the convective heat or mass transfer and cooling the electronic devises [1]. The second kind is the Eckart streaming, which is a flow generated far from the solid boundaries, it can be used to mix a chemical solutions [2], and to drive a viscous liquids in channels [3-4], in micro-gravity area. Our study focuses on the Eckart streaming configuration, which is investigated both numerical and experimental means. The experimental configuration is restricted to the case of a cylindrical non-heated cavity full of water or of a water+glycerol mixture. At the middle of one side of the cavity, a plane ultrasonic transducer generates a 2MHz wave; an absorber is set at the opposite side of the cavity to avoid any reflections. The velocity field is measured with a standard PIV system. [1] P. Vainshtein, M. Fichman and C. Gutfinger, "Acoustic enhancement of heat transfer between two parallel plates", International Journal of Heat and Mass Transfert, 1995, 38(10), 1893. [2] C. Suri, K. Tekenaka, H. Yanagida, Y. Kojima and K. Koyama, "Chaotic mixing generated by acoustic streaming", Ultrasonics, 2002, 40, 393 [3] O.V. Rudenko and A.A. Sukhorukov, "Nonstationnary Eckart streaming and pumping of liquid in ultrasonic field", Acoustical Physics, 1998, 44, 653. [4] Kenneth D. Frampton, Shawn E. Martin and Keith Minor, "The scaling of acoustic streaming for application in micro-fluidic devices", Applied Acoustics, 2003, 64,681

Modal radiation patterns of baffled circular plates and membranes.

PubMed

Christiansen, Thomas Lehrmann; Hansen, Ole; Thomsen, Erik Vilain; Jensen, Jørgen Arendt

2014-05-01

The far field velocity potential and radiation pattern of baffled circular plates and membranes are found analytically using the full set of modal velocity profiles derived from the corresponding equation of motion. The derivation is valid for a plate or membrane subjected to an external excitation force, which is used as a sound receiver in any medium or as a sound transmitter in a gaseous medium. A general, concise expression is given for the radiation pattern of any mode of the membrane and the plate with arbitrary boundary conditions. Specific solutions are given for the four special cases of a plate with clamped, simply supported, and free edge boundary conditions as well as for the membrane. For all non-axisymmetric modes, the velocity potential along the axis of the radiator is found to be strictly zero. In the long wavelength limit, the radiation pattern of all axisymmetric modes approaches that of a monopole, while the non-axisymmetric modes exhibit multipole behavior. Numerical results are also given, demonstrating the implications of having non-axisymmetric excitation using both a point excitation with varying eccentricity and a homogeneous excitation acting on half of the circular radiator.

Testing the magnetar scenario for superluminous supernovae with circular polarimetry

NASA Astrophysics Data System (ADS)

Cikota, Aleksandar; Leloudas, Giorgos; Bulla, Mattia; Inserra, Cosimo; Chen, Ting-Wan; Spyromilio, Jason; Patat, Ferdinando; Cano, Zach; Cikota, Stefan; Coughlin, Michael W.; Kankare, Erkki; Lowe, Thomas B.; Maund, Justyn R.; Rest, Armin; Smartt, Stephen J.; Smith, Ken W.; Wainscoat, Richard J.; Young, David R.

2018-05-01

Superluminous supernovae (SLSNe) are at least ˜5 times more luminous than common supernovae (SNe). Especially hydrogen-poor SLSN-I are difficult to explain with conventional powering mechanisms. One possible scenario that might explain such luminosities is that SLSNe-I are powered by an internal engine, such as a magnetar or an accreting black hole. Strong magnetic fields or collimated jets can circularly polarize light. In this work, we measured circular polarization of two SLSNe-I with the FOcal Reducer and low dispersion Spectrograph (FORS2) mounted at the ESO's Very Large Telescope (VLT). PS17bek, a fast evolving SLSN-I, was observed around peak, while OGLE16dmu, a slowly evolving SLSN-I, was observed 100 days after maximum. Neither SLSN shows evidence of circularly polarized light, however, these non-detections do not rule out the magnetar scenario as the powering engine for SLSNe-I. We calculate the strength of the magnetic field and the expected circular polarization as a function of distance from the magnetar, which decreases very fast. Additionally, we observed no significant linear polarization for PS17bek at four epochs, suggesting that the photosphere near peak is close to spherical symmetry.

A CIRCULAR-RIBBON SOLAR FLARE FOLLOWING AN ASYMMETRIC FILAMENT ERUPTION

DOE Office of Scientific and Technical Information (OSTI.GOV)

Liu, Chang; Deng, Na; Lee, Jeongwoo

The dynamic properties of flare ribbons and the often associated filament eruptions can provide crucial information on the flaring coronal magnetic field. This Letter analyzes the GOES-class X1.0 flare on 2014 March 29 (SOL2014-03-29T17:48), in which we found an asymmetric eruption of a sigmoidal filament and an ensuing circular flare ribbon. Initially both EUV images and a preflare nonlinear force-free field model show that the filament is embedded in magnetic fields with a fan-spine-like structure. In the first phase, which is defined by a weak but still increasing X-ray emission, the western portion of the sigmoidal filament arches upward andmore » then remains quasi-static for about five minutes. The western fan-like and the outer spine-like fields display an ascending motion, and several associated ribbons begin to brighten. Also found is a bright EUV flow that streams down along the eastern fan-like field. In the second phase that includes the main peak of hard X-ray (HXR) emission, the filament erupts, leaving behind two major HXR sources formed around its central dip portion and a circular ribbon brightened sequentially. The expanding western fan-like field interacts intensively with the outer spine-like field, as clearly seen in running difference EUV images. We discuss these observations in favor of a scenario where the asymmetric eruption of the sigmoidal filament is initiated due to an MHD instability and further facilitated by reconnection at a quasi-null in corona; the latter is in turn enhanced by the filament eruption and subsequently produces the circular flare ribbon.« less

Ambient groundwater flow diminishes nitrogen cycling in streams

NASA Astrophysics Data System (ADS)

Azizian, M.; Grant, S. B.; Rippy, M.; Detwiler, R. L.; Boano, F.; Cook, P. L. M.

2017-12-01

Modeling and experimental studies demonstrate that ambient groundwater reduces hyporheic exchange, but the implications of this observation for stream N-cycling is not yet clear. We utilized a simple process-based model (the Pumping and Streamline Segregation or PASS model) to evaluate N- cycling over two scales of hyporheic exchange (fluvial ripples and riffle-pool sequences), ten ambient groundwater and stream flow scenarios (five gaining and losing conditions and two stream discharges), and three biogeochemical settings (identified based on a principal component analysis of previously published measurements in streams throughout the United States). Model-data comparisons indicate that our model provides realistic estimates for direct denitrification of stream nitrate, but overpredicts nitrification and coupled nitrification-denitrification. Riffle-pool sequences are responsible for most of the N-processing, despite the fact that fluvial ripples generate 3-11 times more hyporheic exchange flux. Across all scenarios, hyporheic exchange flux and the Damkohler Number emerge as primary controls on stream N-cycling; the former regulates trafficking of nutrients and oxygen across the sediment-water interface, while the latter quantifies the relative rates of organic carbon mineralization and advective transport in streambed sediments. Vertical groundwater flux modulates both of these master variables in ways that tend to diminish stream N-cycling. Thus, anthropogenic perturbations of ambient groundwater flows (e.g., by urbanization, agricultural activities, groundwater mining, and/or climate change) may compromise some of the key ecosystem services provided by streams.

Mathematical Model of Stress-Strain State of Curved Tube of Non-Circular Cross-Section with Account of Technological Wall Thickness Variation

NASA Astrophysics Data System (ADS)

Pirogov, S. P.; Ustinov, N. N.; Smolin, N. I.

2018-05-01

A mathematical model of the stress-strain state of a curved tube of a non-circular cross-section is presented, taking into account the technological wall thickness variation. On the basis of the semi-membrane shell theory, a system of linear differential equations describing the deformation of a tube under the effect of pressure is obtained. To solve the boundary value problem, the method of shooting is applied. The adequacy of the proposed mathematical model is verified by comparison with the experimental data and the results of the calculation of tubes by the energy method.

Correlation of circular RNA abundance with proliferation--exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues.

PubMed

Bachmayr-Heyda, Anna; Reiner, Agnes T; Auer, Katharina; Sukhbaatar, Nyamdelger; Aust, Stefanie; Bachleitner-Hofmann, Thomas; Mesteri, Ildiko; Grunt, Thomas W; Zeillinger, Robert; Pils, Dietmar

2015-01-27

Circular RNAs are a recently (re-)discovered abundant RNA species with presumed function as miRNA sponges, thus part of the competing endogenous RNA network. We analysed the expression of circular and linear RNAs and proliferation in matched normal colon mucosa and tumour tissues. We predicted >1,800 circular RNAs and proved the existence of five randomly chosen examples using RT-qPCR. Interestingly, the ratio of circular to linear RNA isoforms was always lower in tumour compared to normal colon samples and even lower in colorectal cancer cell lines. Furthermore, this ratio correlated negatively with the proliferation index. The correlation of global circular RNA abundance (the circRNA index) and proliferation was validated in a non-cancerous proliferative disease, idiopathic pulmonary fibrosis, ovarian cancer cells compared to cultured normal ovarian epithelial cells, and 13 normal human tissues. We are the first to report a global reduction of circular RNA abundance in colorectal cancer cell lines and cancer compared to normal tissues and discovered a negative correlation of global circular RNA abundance and proliferation. This negative correlation seems to be a general principle in human tissues as validated with three different settings. Finally, we present a simple model how circular RNAs could accumulate in non-proliferating cells.

Investigation of air stream from combustor-liner air entry holes, 3

NASA Technical Reports Server (NTRS)

Aiba, T.; Nakano, T.

1979-01-01

Jets flowing from air entry holes of the combustor liner of a gas turbine were investigated. Cold air was supplied through the air entry holes into the primary hot gas flows. The mass flow of the primary hot gas and issuing jets was measured, and the behavior of the air jets was studied by the measurement of the temperature distribution of the gas mixture. The air jets flowing from three circular air entry holes, single streamwise long holes, and two opposing circular holes, parallel to the primary flow were studied along with the effects of jet and gas stream velocities, and of gas temperature. The discharge coefficient, the maximum penetration of the jets, the jet flow path, the mixing of the jets, and temperature distribution across the jets were investigated. Empirical expressions which describe the characteristics of the jets under the conditions of the experiments were formulated.

Extended generalized recurrence plot quantification of complex circular patterns

NASA Astrophysics Data System (ADS)

Riedl, Maik; Marwan, Norbert; Kurths, Jürgen

2017-03-01

The generalized recurrence plot is a modern tool for quantification of complex spatial patterns. Its application spans the analysis of trabecular bone structures, Turing patterns, turbulent spatial plankton patterns, and fractals. Determinism is a central measure in this framework quantifying the level of regularity of spatial structures. We show by basic examples of fully regular patterns of different symmetries that this measure underestimates the orderliness of circular patterns resulting from rotational symmetries. We overcome this crucial problem by checking additional structural elements of the generalized recurrence plot which is demonstrated with the examples. Furthermore, we show the potential of the extended quantity of determinism applying it to more irregular circular patterns which are generated by the complex Ginzburg-Landau-equation and which can be often observed in real spatially extended dynamical systems. So, we are able to reconstruct the main separations of the system's parameter space analyzing single snapshots of the real part only, in contrast to the use of the original quantity. This ability of the proposed method promises also an improved description of other systems with complicated spatio-temporal dynamics typically occurring in fluid dynamics, climatology, biology, ecology, social sciences, etc.

Circular states of atomic hydrogen

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lutwak, R.; Holley, J.; Chang, P.P.

1997-08-01

We describe the creation of circular states of hydrogen by adiabatic transfer of a Rydberg state in crossed electric and magnetic fields, and also by adiabatic passage in a rotating microwave field. The latter method permits rapid switching between the two circular states of a given n manifold. The two methods are demonstrated experimentally, and results are presented of an analysis of the field ionization properties of the circular states. An application for the circular states is illustrated by millimeter-wave resonance in hydrogen of the n=29{r_arrow}n=30 transition. {copyright} {ital 1997} {ital The American Physical Society}

Secondary Instability of Stationary Crossflow Vortices in Mach 6 Boundary Layer Over a Circular Cone

NASA Technical Reports Server (NTRS)

Li, Fei; Choudhari, Meelan M.; Paredes-Gonzalez, Pedro; Duan, Lian

2015-01-01

Hypersonic boundary layer flows over a circular cone at moderate incidence can support strong crossflow instability. Due to more efficient excitation of stationary crossflow vortices by surface roughness, such boundary layer flows may transition to turbulence via rapid amplification of the high-frequency secondary instabilities of finite amplitude stationary crossflow vortices. The amplification characteristics of these secondary instabilities are investigated for crossflow vortices generated by an azimuthally periodic array of roughness elements over a 7-degree half-angle circular cone in a Mach 6 free stream. Depending on the local amplitude of the stationary crossflow mode, the most unstable secondary disturbances either originate from the second (i.e., Mack) mode instabilities of the unperturbed boundary layer or correspond to genuine secondary instabilities that reduce to stable disturbances at sufficiently small amplitudes of the stationary crossflow vortex. The predicted frequencies of dominant secondary disturbances are similar to those measured during wind tunnel experiments at Purdue University and the Technical University of Braunschweig, Germany.

Large Carbon Dioxide Fluxes from Headwater Boreal and Sub-Boreal Streams

PubMed Central

Venkiteswaran, Jason J.; Schiff, Sherry L.; Wallin, Marcus B.

2014-01-01

Half of the world's forest is in boreal and sub-boreal ecozones, containing large carbon stores and fluxes. Carbon lost from headwater streams in these forests is underestimated. We apply a simple stable carbon isotope idea for quantifying the CO2 loss from these small streams; it is based only on in-stream samples and integrates over a significant distance upstream. We demonstrate that conventional methods of determining CO2 loss from streams necessarily underestimate the CO2 loss with results from two catchments. Dissolved carbon export from headwater catchments is similar to CO2 loss from stream surfaces. Most of the CO2 originating in high CO2 groundwaters has been lost before typical in-stream sampling occurs. In the Harp Lake catchment in Canada, headwater streams account for 10% of catchment net CO2 uptake. In the Krycklan catchment in Sweden, this more than doubles the CO2 loss from the catchment. Thus, even when corrected for aquatic CO2 loss measured by conventional methods, boreal and sub-boreal forest carbon budgets currently overestimate carbon sequestration on the landscape. PMID:25058488

Large carbon dioxide fluxes from headwater boreal and sub-boreal streams.

PubMed

Venkiteswaran, Jason J; Schiff, Sherry L; Wallin, Marcus B

2014-01-01

Half of the world's forest is in boreal and sub-boreal ecozones, containing large carbon stores and fluxes. Carbon lost from headwater streams in these forests is underestimated. We apply a simple stable carbon isotope idea for quantifying the CO2 loss from these small streams; it is based only on in-stream samples and integrates over a significant distance upstream. We demonstrate that conventional methods of determining CO2 loss from streams necessarily underestimate the CO2 loss with results from two catchments. Dissolved carbon export from headwater catchments is similar to CO2 loss from stream surfaces. Most of the CO2 originating in high CO2 groundwaters has been lost before typical in-stream sampling occurs. In the Harp Lake catchment in Canada, headwater streams account for 10% of catchment net CO2 uptake. In the Krycklan catchment in Sweden, this more than doubles the CO2 loss from the catchment. Thus, even when corrected for aquatic CO2 loss measured by conventional methods, boreal and sub-boreal forest carbon budgets currently overestimate carbon sequestration on the landscape.

Circular polarization of twilight.

NASA Technical Reports Server (NTRS)

Angel, J. R. P.; Illing, R.; Martin, P. G.

1972-01-01

Review of observations of circular polarization of twilight performed with a polarimeter which uses an electronically switched Pockels cell operated as a reversible quarter-wave plate to convert circular into linear polarization. The latter was then analyzed by a Wollaston prism followed by two gallium-arsenide photomultipliers. The discovery of a definite natural circular polarization at twilight does suggest that, with increased observation precision, measurements of the small daylight component are possible. These could give useful information about particles in the atmosphere and be valuable in studies of meteorology and air pollution.

Nonlinear and Synchronous Dissolved Organic Matter Dynamics in Streams Across an Agriculture Land Use and Climate Setting

NASA Astrophysics Data System (ADS)

Xenopoulos, M. A.; Vogt, R. J.

2014-12-01

There is now increasing evidence that non-linearity is a common response in ecological systems to pressures caused by human activities. There is also increasing evidence that exogenous environmental drivers, such as climate, induce spatial and temporal synchrony in a wide range of ecological variables. Using Moran's I and Pearson's correlation, we quantified the synchrony of dissolved organic carbon concentration (DOC) and quality (DOM; e.g., specific UV absorbance, Fluorescence Index, PARAFAC), nutrients, discharge and temperature in 40 streams that span an agriculture gradient (0 to >70% cropland), over 10 years. We then used breakpoint regression, 2D-Kolmogorov-Smirnov test and significant zero crossings (SiZer) analyses to quantify the prevalence of nonlinearity and ecological thresholds (breakpoints) where applicable. There was a high degree of synchrony in DOM quality (r > 0.7) but not DOC (r < 0.4). The degree of synchrony was driven in part by the catchment's land use. With respect to the nonlinear analyses we found non-linearity in ~50% of bivariate datasets analyzed. Non-linearity was also driven in part by the catchment's land use. Breakpoints defined different DOM properties. Nonlinearity and synchronous behaviour in DOM are intimately linked to land use.

An experimental trace gas investigation of fluid transport and mixing in a circular-to-rectangular transition duct

NASA Technical Reports Server (NTRS)

Reichert, B. A.; Hingst, W. R.; Okiishi, T. H.

1991-01-01

An ethylene trace gas technique was used to map out fluid transport and mixing within a circular to rectangular transition duct. Ethylene gas was injected at several points in a cross stream plane upstream of the transition duct. Ethylene concentration contours were determined at several cross stream measurement planes spaced axially within the duct. The flow involved a uniform inlet flow at a Mach number level of 0.5. Statistical analyses were used to quantitatively interpret the trace gas results. Also, trace gas data were considered along with aerodynamic and surface flow visualization results to ascertain transition duct flow phenomena. Convection of wall boundary layer fluid by vortices produced regions of high total pressure loss in the duct. The physical extent of these high loss regions is governed by turbulent diffusion.

Corotating pressure waves without streams in the solar wind

NASA Technical Reports Server (NTRS)

Burlaga, L. F.

1983-01-01

Voyager 1 and 2 magnetic field and plasma data are presented which demonstrate the existence of large scale, corotating, non-linear pressure waves between 2 AU and 4 AU that are not accompanied by fast streams. The pressure waves are presumed to be generated by corotating streams near the Sun. For two of the three pressure waves that are discussed, the absence of a stream is probably a real, physical effect, viz., a consequence of deceleration of the stream by the associated compression wave. For the third pressure wave, the apparent absence of a stream may be a geometrical effect; it is likely that the stream was at latitudes just above those of the spacecraft, while the associated shocks and compression wave extended over a broader range of latitudes so that they could be observed by the spacecraft. It is suggested that the development of large-scale non-linear pressure waves at the expense of the kinetic energy of streams produces a qualitative change in the solar wind in the outer heliosphere. Within a few AU the quasi-stationary solar wind structure is determined by corotating streams whose structure is determined by the boundary conditions near the Sun.

Symmetry and Circularization in the Damped Kepler Problem

NASA Astrophysics Data System (ADS)

Crescimanno, Michael; Hamilton, Brian

2007-05-01

Generically, a Hamiltonian system to which damping (non-Hamiltonian) forces are added loses its symmetry. It is a non-trivial fact that the eccentricity vector of lightly damped Kepler orbits is a constant for linear damping only. We describe the group theoretic background necessary to understand this fact and to relate it to that analogue of the Landau criterion for superfluidity associated with the general problem of orbit circularization. To cite this abstract, use the following reference: http://meetings.aps.org/link/BAPS.2007.OSS07.C2.4

THE SEGUE K GIANT SURVEY. III. QUANTIFYING GALACTIC HALO SUBSTRUCTURE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Janesh, William; Morrison, Heather L.; Ma, Zhibo

2016-01-10

We statistically quantify the amount of substructure in the Milky Way stellar halo using a sample of 4568 halo K giant stars at Galactocentric distances ranging over 5–125 kpc. These stars have been selected photometrically and confirmed spectroscopically as K giants from the Sloan Digital Sky Survey’s Sloan Extension for Galactic Understanding and Exploration project. Using a position–velocity clustering estimator (the 4distance) and a model of a smooth stellar halo, we quantify the amount of substructure in the halo, divided by distance and metallicity. Overall, we find that the halo as a whole is highly structured. We also confirm earliermore » work using blue horizontal branch (BHB) stars which showed that there is an increasing amount of substructure with increasing Galactocentric radius, and additionally find that the amount of substructure in the halo increases with increasing metallicity. Comparing to resampled BHB stars, we find that K giants and BHBs have similar amounts of substructure over equivalent ranges of Galactocentric radius. Using a friends-of-friends algorithm to identify members of individual groups, we find that a large fraction (∼33%) of grouped stars are associated with Sgr, and identify stars belonging to other halo star streams: the Orphan Stream, the Cetus Polar Stream, and others, including previously unknown substructures. A large fraction of sample K giants (more than 50%) are not grouped into any substructure. We find also that the Sgr stream strongly dominates groups in the outer halo for all except the most metal-poor stars, and suggest that this is the source of the increase of substructure with Galactocentric radius and metallicity.« less

Variable exchange between a stream and an aquifer in the Rio Grande Project Area

NASA Astrophysics Data System (ADS)

Sheng, Z.; Abudu, S.; Michelsen, A.; King, P.

2016-12-01

Both surface water and groundwater in the Rio Grande Project area in southern New Mexico and Far West Texas have been stressed by natural conditions such as droughts and human activities, including urban development and agricultural irrigation. In some area pumping stress in the aquifer becomes so great that it depletes the river flow especially during the irrigation season, typically from March through October. Therefore understanding such relationship between surface water and groundwater becomes more important in regional water resources planning and management. In this area, stream flows are highly regulated by the upstream reservoirs during the irrigation season and greatly influenced by return flows during non-irrigation season. During a drought additional groundwater pumping to supplement surface water shortage further complicates the surface water and groundwater interaction. In this paper the authors will use observation data and results of numerical models (MODFLOW) to characterize and quantify hydrological exchange fluxes between groundwater in the aquifers and surface water as well as impacts of groundwater pumping. The interaction shows a very interesting seasonal variation (irrigation vs. non-irrigation) as well as impact of a drought. Groundwater has been pumped for both municipal supplies and agricultural irrigation, which has imposed stresses toward both stream flows and aquifer storage. The results clearly show that historic groundwater pumping has caused some reaches of the river change from gaining stream to losing stream. Beyond the exchange between surface water and groundwater in the shallow aquifer, groundwater pumping in a deep aquifer could also enhance the exchanges between different aquifers through leaky confining layers. In the earlier history of pumping, pumping from the shallow aquifer is compensated by simple depletion of surface water, while deep aquifer tends to use the aquifer storage. With continued pumping, the cumulative

StreamVOC - A deterministic source-apportionment model to estimate volatile organic compound concentrations in rivers and streams

USGS Publications Warehouse

Asher, William E.; Bender, David A.; Zogorski, John S.; Bartholomay, Roy C.

2006-01-01

This report documents the construction and verification of the model, StreamVOC, that estimates (1) the time- and position-dependent concentrations of volatile organic compounds (VOCs) in rivers and streams as well as (2) the source apportionment (SA) of those concentrations. The model considers how different types of sources and loss processes can act together to yield a given observed VOC concentration. Reasons for interest in the relative and absolute contributions of different sources to contaminant concentrations include the need to apportion: (1) the origins for an observed contamination, and (2) the associated human and ecosystem risks. For VOCs, sources of interest include the atmosphere (by absorption), as well as point and nonpoint inflows of VOC-containing water. Loss processes of interest include volatilization to the atmosphere, degradation, and outflows of VOC-containing water from the stream to local ground water. This report presents the details of StreamVOC and compares model output with measured concentrations for eight VOCs found in the Aberjona River at Winchester, Massachusetts. Input data for the model were obtained during a synoptic study of the stream system conducted July 11-13, 2001, as part of the National Water-Quality Assessment (NAWQA) Program of the U.S. Geological Survey. The input data included a variety of basic stream characteristics (for example, flows, temperature, and VOC concentrations). The StreamVOC concentration results agreed moderately well with the measured concentration data for several VOCs and provided compound-dependent SA estimates as a function of longitudinal distance down the river. For many VOCs, the quality of the agreement between the model-simulated and measured concentrations could be improved by simple adjustments of the model input parameters. In general, this study illustrated: (1) the considerable difficulty of quantifying correctly the locations and magnitudes of ground-water-related sources of

Impact of stream restoration on flood waves

NASA Astrophysics Data System (ADS)

Sholtes, J.; Doyle, M.

2008-12-01

Restoration of channelized or incised streams has the potential to reduce downstream flooding via storing and dissipating the energy of flood waves. Restoration design elements such as restoring meanders, reducing slope, restoring floodplain connectivity, re-introducing in-channel woody debris, and re-vegetating banks and the floodplain have the capacity to attenuate flood waves via energy dissipation and channel and floodplain storage. Flood discharge hydrographs measured up and downstream of several restored reaches of varying stream order and located in both urban and rural catchments are coupled with direct measurements of stream roughness at various stages to directly measure changes to peak discharge, flood wave celerity, and dispersion. A one-dimensional unsteady flow routing model, HEC-RAS, is calibrated and used to compare attenuation characteristics between pre and post restoration conditions. Modeled sensitivity results indicate that a restoration project placed on a smaller order stream demonstrates the highest relative reduction in peak discharge of routed flood waves compared to one of equal length on a higher order stream. Reductions in bed slope, extensions in channel length, and increases in channel and floodplain roughness follow restoration placement with the watershed in relative importance. By better understanding how design, scale, and location of restored reaches within a catchment hydraulically impact flood flows, this study contributes both to restoration design and site decision making. It also quantifies the effect of reach scale stream restoration on flood wave attenuation.

Streaming motions and kinematic distances to molecular clouds

NASA Astrophysics Data System (ADS)

Ramón-Fox, F. G.; Bonnell, Ian A.

2018-02-01

We present high-resolution smoothed particle hydrodynamics simulations of a region of gas flowing in a spiral arm and identify dense gas clouds to investigate their kinematics with respect to a Milky Way model. We find that, on average, the gas in the arms can have a net radial streaming motion of vR ≈ -9 km s-1 and rotate ≈ 6 km s-1 slower than the circular velocity. This translates to average peculiar motions towards the Galaxy centre and opposite to Galactic rotation. These results may be sensitive to the assumed spiral arm perturbation, which is ≈ 3 per cent of the disc potential in our model. We compare the actual distance and the kinematic estimate and we find that streaming motions introduce systematic offsets of ≈1 kpc. We find that the distance error can be as large as ±2 kpc, and the recovered cloud positions have distributions that can extend significantly into the inter-arm regions. We conclude that this poses a difficulty in tracing spiral arm structure in molecular cloud surveys.

Numerical Calculation and Experiment of Coupled Dynamics of the Differential Velocity Vane Pump Driven by the Hybrid Higher-order Fourier Non-circular Gears

NASA Astrophysics Data System (ADS)

Xu, Gaohuan; Chen, Jianneng; Zhao, Huacheng

2018-06-01

The transmission systems of the differential velocity vane pumps (DVVP) have periodic vibrations under loads. And it is not easy to find the reason. In order to optimize the performance of the pump, the authors proposed DVVP driven by the hybrid Higher-order Fourier non-circular gears and tested it. There were also similar periodic vibrations and noises under loads. Taking into account this phenomenon, the paper proposes fluid mechanics and solid mechanics simulation methodology to analyze the coupling dynamics between fluid and transmission system and reveals the reason. The results show that the pump has the reverse drive phenomenon, which is that the blades drive the non-circular gears when the suction and discharge is alternating. The reverse drive phenomenon leads the sign of the shaft torque to be changed in positive and negative way. So the transmission system produces torsional vibrations. In order to confirm the simulation results, micro strains of the input shaft of the pump impeller are measured by the Wheatstone bridge and wireless sensor technology. The relationships between strain and torque are obtained by experimental calibration, and then the true torque of input shaft is calculated indirectly. The experimental results are consistent to the simulation results. It is proven that the periodic vibrations are mainly caused by fluid solid coupling, which leads to periodic torsional vibration of the transmission system.

Experimental Acoustic Velocity Measurements in a Tidally Affected Stream

USGS Publications Warehouse

Storm, J.B.; ,

2002-01-01

The U.S. Geological Survey (USGS) constructed a continuous steamgaging station on the tidally affected Escatawpa River at Interstate 10 near Orange Grove, Mississippi, in August 2001. The gage collects water quantity parameters of stage and stream velocity, and water quality parameters of water temperature, specific conductance, and salinity. Data are transmitted to the local USGS office via the GOES satellite and are presented on a near real-time web page. Due to tidal effects, the stream has multiple flow regimes which include downstream, bi-directional, and reverse flows. Advances in acoustic technology have made it possible to gage streams of this nature where conventional methods have been unsuccessful. An experimental mount was designed in an attempt to recognize, describe, and quantify these flow regimes by using acoustic Doppler equipment.

Correlation of circular RNA abundance with proliferation – exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues

PubMed Central

Bachmayr-Heyda, Anna; Reiner, Agnes T.; Auer, Katharina; Sukhbaatar, Nyamdelger; Aust, Stefanie; Bachleitner-Hofmann, Thomas; Mesteri, Ildiko; Grunt, Thomas W.; Zeillinger, Robert; Pils, Dietmar

2015-01-01

Circular RNAs are a recently (re-)discovered abundant RNA species with presumed function as miRNA sponges, thus part of the competing endogenous RNA network. We analysed the expression of circular and linear RNAs and proliferation in matched normal colon mucosa and tumour tissues. We predicted >1,800 circular RNAs and proved the existence of five randomly chosen examples using RT-qPCR. Interestingly, the ratio of circular to linear RNA isoforms was always lower in tumour compared to normal colon samples and even lower in colorectal cancer cell lines. Furthermore, this ratio correlated negatively with the proliferation index. The correlation of global circular RNA abundance (the circRNA index) and proliferation was validated in a non-cancerous proliferative disease, idiopathic pulmonary fibrosis, ovarian cancer cells compared to cultured normal ovarian epithelial cells, and 13 normal human tissues. We are the first to report a global reduction of circular RNA abundance in colorectal cancer cell lines and cancer compared to normal tissues and discovered a negative correlation of global circular RNA abundance and proliferation. This negative correlation seems to be a general principle in human tissues as validated with three different settings. Finally, we present a simple model how circular RNAs could accumulate in non-proliferating cells. PMID:25624062

Simulating stream response to floodplain connectivity, reforestation and wetland restoration from reach to catchment scales

NASA Astrophysics Data System (ADS)

Singh, N.; Bomblies, A.; Wemple, B. C.; Ricketts, T.

2017-12-01

Natural infrastructure (e.g., floodplains, forests) can offer multiple ecosystem services (ES), including flood resilience and water quality improvement. In order to maintain these ES, state, federal and non-profit organizations may consider various interventions, such as increased floodplain connectivity, reforestation, and wetland restoration to minimize flood peaks and erosion during events. However, the effect of these interventions on hydro-geomorphic responses of streams from reach to catchment scales (>100 km2) are rarely quantified. We used stream geomorphic assessment datasets with a hydraulic model to investigate the influence of above mentioned interventions on stream power (SP), water depth (WD) and channel velocity (VEL) during floods of 2yr and 100yr return periods for three catchments in the Lake Champlain basin, Vermont. To simulate the effect of forests and wetlands, we changed the Manning's coefficient in the model, and to simulate the increased connectivity of the floodplain, we edited the LIDAR data to lower bank elevations. We find that the wetland scenario resulted in the greatest decline in WD and SP, whereas forested scenario exhibited maximum reduction in VEL. The connectivity scenario showed a decline in almost all stream responses, but the magnitude of change was relatively smaller. On average, 35% (2yr) and 50% (100yr) of altered reaches demonstrated improvement over baseline, and 39% (2yr) and 31% (100yr) of altered reaches showed degradation over baseline, across all interventions. We also noted changes in stream response along unaltered reaches (>30%), where we did not make interventions. Overall, these results point to the complexity related to stream interventions and suggest careful evaluation of spatially explicit tradeoffs of these interventions on river-floodplain ecosystem. The proposed approach of simulating and understanding stream's response to interventions, prior to the implementation of restoration activities, may lead to

Quantifying spatial and temporal patterns of flow intermittency using spatially contiguous runoff data

NASA Astrophysics Data System (ADS)

Yu (于松延), Songyan; Bond, Nick R.; Bunn, Stuart E.; Xu, Zongxue; Kennard, Mark J.

2018-04-01

River channel drying caused by intermittent stream flow is a widely-recognized factor shaping stream ecosystems. There is a strong need to quantify the distribution of intermittent streams across catchments to inform management. However, observational gauge networks provide only point estimates of streamflow variation. Increasingly, this limitation is being overcome through the use of spatially contiguous estimates of the terrestrial water-balance, which can also assist in estimating runoff and streamflow at large-spatial scales. Here we proposed an approach to quantifying spatial and temporal variation in monthly flow intermittency throughout river networks in eastern Australia. We aggregated gridded (5 × 5 km) monthly water-balance data with a hierarchically nested catchment dataset to simulate catchment runoff accumulation throughout river networks from 1900 to 2016. We also predicted zero flow duration for the entire river network by developing a robust predictive model relating measured zero flow duration (% months) to environmental predictor variables (based on 43 stream gauges). We then combined these datasets by using the predicted zero flow duration from the regression model to determine appropriate 'zero' flow thresholds for the modelled discharge data, which varied spatially across the catchments examined. Finally, based on modelled discharge data and identified actual zero flow thresholds, we derived summary metrics describing flow intermittency across the catchment (mean flow duration and coefficient-of-variation in flow permanence from 1900 to 2016). We also classified the relative degree of flow intermittency annually to characterise temporal variation in flow intermittency. Results showed that the degree of flow intermittency varied substantially across streams in eastern Australia, ranging from perennial streams flowing permanently (11-12 months) to strongly intermittent streams flowing 4 months or less of year. Results also showed that the

Forensics of subhalo-stream encounters: the three phases of gap growth

NASA Astrophysics Data System (ADS)

Erkal, Denis; Belokurov, Vasily

2015-06-01

There is hope to discover dark matter subhaloes free of stars (predicted by the current theory of structure formation) by observing gaps they produce in tidal streams. In fact, this is the most promising technique for dark substructure detection and characterization as such gaps grow with time, magnifying small perturbations into clear signatures observable by ongoing and planned Galaxy surveys. To facilitate such future inference, we develop a comprehensive framework for studies of the growth of the stream density perturbations. Starting with simple assumptions and restricting to streams on circular orbits, we derive analytic formulae that describe the evolution of all gap properties (size, density contrast, etc.) at all times. We uncover complex, previously unnoticed behaviour, with the stream initially forming a density enhancement near the subhalo impact point. Shortly after, a gap forms due to the relative change in period induced by the subhalo's passage. There is an intermediate regime where the gap grows linearly in time. At late times, the particles in the stream overtake each other, forming caustics, and the gap grows like √{t}. In addition to the secular growth, we find that the gap oscillates as it grows due to epicyclic motion. We compare this analytic model to N-body simulations and find an impressive level of agreement. Importantly, when analysing the observation of a single gap we find a large degeneracy between the subhalo mass, the impact geometry and kinematics, the host potential, and the time since flyby.

Caged circular antisense oligonucleotides for photomodulation of RNA digestion and gene expression in cells

PubMed Central

Wu, Li; Wang, Yuan; Wu, Junzhou; Lv, Cong; Wang, Jie; Tang, Xinjing

2013-01-01

We synthesized three 20mer caged circular antisense oligodeoxynucleotides (R20, R20B2 and R20B4) with a photocleavable linker and an amide bond linker between two 10mer oligodeoxynucleotides. With these caged circular antisense oligodeoxynucleotides, RNA-binding affinity and its digestion by ribonuclease H were readily photomodulated. RNA cleavage rates were upregulated ∼43-, 25- and 15-fold for R20, R20B2 and R20B4, respectively, upon light activation in vitro. R20B2 and R20B4 with 2- or 4-nt gaps in the target RNA lost their ability to bind the target RNA even though a small amount of RNA digestion was still observed. The loss of binding ability indicated promising gene photoregulation through a non-enzymatic strategy. To test this strategy, three caged circular antisense oligonucleotides (PS1, PS2 and PS3) with 2′-OMe RNA and phosphorothioate modifications were synthesized to target GFP expression. Upon light activation, photomodulation of target hybridization and GFP expression in cells was successfully achieved with PS1, PS2 and PS3. These caged circular antisense oligonucleotides show promising applications of photomodulating gene expression through both ribonuclease H and non-enzyme involved antisense strategies. PMID:23104375

The velocity and vorticity fields of the turbulent near wake of a circular cylinder

NASA Technical Reports Server (NTRS)

Wallace, James; Ong, Lawrence; Moin, Parviz

1995-01-01

The purpose of this research is to provide a detailed experimental database of velocity and vorticity statistics in the very near wake (x/d less than 10) of a circular cylinder at Reynolds number of 3900. This study has determined that estimations of the streamwise velocity component in flow fields with large nonzero cross-stream components are not accurate. Similarly, X-wire measurements of the u and v velocity components in flows containing large w are also subject to the errors due to binormal cooling. Using the look-up table (LUT) technique, and by calibrating the X-wire probe used here to include the range of expected angles of attack (+/- 40 deg), accurate X-wire measurements of instantaneous u and v velocity components in the very near wake region of a circular cylinder has been accomplished. The approximate two-dimensionality of the present flow field was verified with four-wire probe measurements, and to some extent the spanwise correlation measurements with the multisensor rake. Hence, binormal cooling errors in the present X-wire measurements are small.

5 CFR 1310.3 - Availability of circulars.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 5 Administrative Personnel 3 2010-01-01 2010-01-01 false Availability of circulars. 1310.3 Section 1310.3 Administrative Personnel OFFICE OF MANAGEMENT AND BUDGET OMB DIRECTIVES OMB CIRCULARS § 1310.3 Availability of circulars. Copies of individual circulars are available at OMB's Internet home page; you may...

Circular spectropolarimetric sensing of chiral photosystems in decaying leaves

NASA Astrophysics Data System (ADS)

Patty, C. H. Lucas; Visser, Luuk J. J.; Ariese, Freek; Buma, Wybren Jan; Sparks, William B.; van Spanning, Rob J. M.; Röling, Wilfred F. M.; Snik, Frans

2017-03-01

Circular polarization spectroscopy has proven to be an indispensable tool in photosynthesis research and (bio)molecular research in general. Oxygenic photosystems typically display an asymmetric Cotton effect around the chlorophyll absorbance maximum with a signal ≤ 1 % . In vegetation, these signals are the direct result of the chirality of the supramolecular aggregates. The circular polarization is thus directly influenced by the composition and architecture of the photosynthetic macrodomains, and is thereby linked to photosynthetic functioning. Although ordinarily measured only on a molecular level, we have developed a new spectropolarimetric instrument, TreePol, that allows for both laboratory and in-the-field measurements. Through spectral multiplexing, TreePol is capable of fast measurements with a sensitivity of ∼ 1 *10-4 and is therefore suitable of non-destructively probing the molecular architecture of whole plant leaves. We have measured the chiroptical evolution of Hedera helix leaves for a period of 22 days. Spectrally resolved circular polarization measurements (450-900 nm) on whole leaves in transmission exhibit a strong decrease in the polarization signal over time after plucking, which we accredit to the deterioration of chiral macro-aggregates. Chlorophyll a levels measured over the same period by means of UV-vis absorption and fluorescence spectroscopy showed a much smaller decrease. With these results we are able to distinguish healthy from deteriorating leaves. Hereby we indicate the potency of circular polarization spectroscopy on whole and intact leaves as a nondestructive tool for structural and plant stress assessment. Additionally, we underline the establishment of circular polarization signals as remotely accessible means of detecting the presence of extraterrestrial life.

Experimental demonstration of the microscopic origin of circular dichroism in two-dimensional metamaterials

PubMed Central

Khanikaev, A. B.; Arju, N.; Fan, Z.; Purtseladze, D.; Lu, F.; Lee, J.; Sarriugarte, P.; Schnell, M.; Hillenbrand, R.; Belkin, M. A.; Shvets, G.

2016-01-01

Optical activity and circular dichroism are fascinating physical phenomena originating from the interaction of light with chiral molecules or other nano objects lacking mirror symmetries in three-dimensional (3D) space. While chiral optical properties are weak in most of naturally occurring materials, they can be engineered and significantly enhanced in synthetic optical media known as chiral metamaterials, where the spatial symmetry of their building blocks is broken on a nanoscale. Although originally discovered in 3D structures, circular dichroism can also emerge in a two-dimensional (2D) metasurface. The origin of the resulting circular dichroism is rather subtle, and is related to non-radiative (Ohmic) dissipation of the constituent metamolecules. Because such dissipation occurs on a nanoscale, this effect has never been experimentally probed and visualized. Using a suite of recently developed nanoscale-measurement tools, we establish that the circular dichroism in a nanostructured metasurface occurs due to handedness-dependent Ohmic heating. PMID:27329108

21 CFR 606.122 - Instruction circular.

Code of Federal Regulations, 2010 CFR

2010-04-01

... instruction circular shall contain: (1) Instructions to administer a suitable plasma volume expander if Red... circular shall contain: (1) The approximate volume of plasma from which a sample unit of Platelets is... entering the container. (m) For Plasma, the instruction circular shall contain: (1) A warning against...

21 CFR 606.122 - Instruction circular.

Code of Federal Regulations, 2011 CFR

2011-04-01

... instruction circular shall contain: (1) Instructions to administer a suitable plasma volume expander if Red... circular shall contain: (1) The approximate volume of plasma from which a sample unit of Platelets is... entering the container. (m) For Plasma, the instruction circular shall contain: (1) A warning against...

Effects of Concrete Channels on Stream Biogeochemistry, Maryland Coastal Plain

NASA Astrophysics Data System (ADS)

Prestegaard, K. L.; Gilbert, L.; Phemister, K.

2005-05-01

In the 1950's and 60's, extensive networks of cement-lined channels were built in suburban watersheds near Washington, D.C. to convey storm water to downstream locations. These cement-lined stream channels limit interactions between surface and groundwater and they provide sources of alkalinity in Maryland Coastal Plain watersheds that normally have low alkalinity. This project was designed to 1) compare base flow water chemistry in headwater reaches of urban and non-urban streams, and 2) to evaluate downstream changes in water chemistry in channelized urban streams in comparison with non-urban reference streams. During a drought year, headwater streams in both urban and non-urban sites had significant concentrations of Fe(II) that were discharged from groundwater sources and rapidly oxidized by iron-oxidizing bacteria. During a wet year, the concentrations of Fe(II) were higher in headwater urban streams than in the non-urban streams. This suggests that impervious surfaces in headwater urban watersheds prevent the recharge of oxygen-rich waters during storm events, which maintains iron-rich groundwater discharge to the stream. Downstream changes in water chemistry are prominent in cement-lined urban channels because they are associated with distinctive microbial communities. The headwater zones of channelized streams are dominated by iron-ozidizing bacteria, that are replaced downstream by manganese-oxidizing zones, and replaced further downstream by biofilms dominated by photosynthesizing cyanobacteria. The reaches dominated by cyanobacteria exhibit diurnal changes in pH due to uptake of CO2 for photosynthesis. Diurnal changes range from 7.5 to 8.8 in the summer months to 7.0 to 7.5 in the cooler months, indicating both the impact of photosynthesis and the additional source of alkalinity provided by concrete. The dissolved oxygen, pH, and other characteristics of tributaries dominated by cyanobacteria are similar to the water chemistry characteristics observed in

Investigating organic matter in Fanno Creek, Oregon, Part 3 of 3: identifying and quantifying sources of organic matter to an urban stream

USGS Publications Warehouse

Goldman, Jami H.; Rounds, Stewart A.; Keith, Mackenzie K.; Sobieszczyk, Steven

2014-01-01

The sources, transport, and characteristics of organic matter (OM) in Fanno Creek, an urban stream in northwest Oregon, were assessed and quantified using: (1) optical instruments to calculate transported loads of dissolved, particulate, and total organic carbon, (2) fluorescence spectroscopy and stable isotope ratios (δ13C, δ15N) to elucidate sources and chemical properties of OM throughout the basin, and (3) synoptic sampling to investigate seasonal and hydrologic variations in the characteristics and quantity of OM. Results from this study indicate that of the roughly 324 (±2.9%) metric tons (tonnes, t) of organic carbon exported from the basin during March 2012 to March 2013, most of the OM in Fanno Creek was dissolved (72%) and was present year-round at concentrations exceeding 3–4 milligrams of carbon per liter, whereas particulate carbon typically was mobilized and transported only by higher-flow conditions. The isotopic and fluorescence characteristics of Fanno Creek OM indicate that the carbon originates primarily from terrestrial inputs, most likely riparian vegetative biomass that enters the stream via litterfall and overland transport and then travels through the system episodically as a result of hydrologic processes. The amount of OM exported from the Fanno Creek drainage over the course of a year in this study is consistent with previous estimates of annual riparian litterfall in or near the creek. Although the creek channel is actively eroding, most bank material has too little OM for that to be a dominant source of OM to the stream. Fluorescence data revealed that the OM contains primarily humic and fulvic-like components that become less aromatic as the OM moves downstream. The most significant seasonal variation was associated with OM transported in the first storms of the autumn season (fall flush). That material was characteristically different, with a larger fraction of microbially derived OM that probably resulted from an accumulation of

Quantifying nutrient sources in an upland catchment using multiple chemical and isotopic tracers

NASA Astrophysics Data System (ADS)

Sebestyen, S. D.; Boyer, E. W.; Shanley, J. B.; Doctor, D. H.; Kendall, C.; Aiken, G. R.

2006-12-01

To explore processes that control the temporal variation of nutrients in surface waters, we measured multiple environmental tracers at the Sleepers River Research Watershed, an upland catchment in northeastern Vermont, USA. Using a set of high-frequency stream water samples, we quantified the variation of nutrients over a range of stream flow conditions with chemical and isotopic tracers of water, nitrate, and dissolved organic carbon (DOC). Stream water concentrations of nitrogen (predominantly in the forms of nitrate and dissolved organic nitrogen) and DOC reflected mixing of water contributed from distinct sources in the forested landscape. Water isotopic signatures and end-member mixing analysis revealed when solutes entered the stream from these sources and that the sources were linked to the stream by preferential shallow subsurface and overland flow paths. Results from the tracers indicated that freshly-leached, terrestrial organic matter was the overwhelming source of high DOC concentrations in stream water. In contrast, in this region where atmospheric nitrogen deposition is chronically elevated, the highest concentrations of stream nitrate were attributable to atmospheric sources that were transported via melting snow and rain fall. These findings are consistent with a conceptual model of the landscape in which coupled hydrological and biogeochemical processes interact to control stream solute variability over time.

Concentric circular focusing reflector realized using high index contrast gratings

NASA Astrophysics Data System (ADS)

Fang, Wenjing; Huang, Yongqing; Fei, Jiarui; Duan, Xiaofeng; Liu, Kai; Ren, Xiaomin

2017-11-01

A non-periodic concentric circular high index contrast grating (CC-HCG) focusing reflector on 500 nm silicon-on-insulator (SOI) platform is fabricated and experimentally demonstrated. The proposed mirror is realized with phase modulation of wave front in a high reflectivity region. The circular structure based HCG focusing reflector has a spot of high concentration at the 10.87 mm with normal incidence for radially polarization, along with the center wavelength set at 1550 nm. The FWHM spot size of the focusing beam decreases to 260 μm, and the intensity increases to 1.26 compared with the incident beam. The focusing efficiency of about 80% is observed at 1550 nm in the experimental measurement.

Use of computer programs STLK1 and STWT1 for analysis of stream-aquifer hydraulic interaction

USGS Publications Warehouse

Desimone, Leslie A.; Barlow, Paul M.

1999-01-01

Quantifying the hydraulic interaction of aquifers and streams is important in the analysis of stream base fow, flood-wave effects, and contaminant transport between surface- and ground-water systems. This report describes the use of two computer programs, STLK1 and STWT1, to analyze the hydraulic interaction of streams with confined, leaky, and water-table aquifers during periods of stream-stage fuctuations and uniform, areal recharge. The computer programs are based on analytical solutions to the ground-water-flow equation in stream-aquifer settings and calculate ground-water levels, seepage rates across the stream-aquifer boundary, and bank storage that result from arbitrarily varying stream stage or recharge. Analysis of idealized, hypothetical stream-aquifer systems is used to show how aquifer type, aquifer boundaries, and aquifer and streambank hydraulic properties affect aquifer response to stresses. Published data from alluvial and stratifed-drift aquifers in Kentucky, Massachusetts, and Iowa are used to demonstrate application of the programs to field settings. Analytical models of these three stream-aquifer systems are developed on the basis of available hydrogeologic information. Stream-stage fluctuations and recharge are applied to the systems as hydraulic stresses. The models are calibrated by matching ground-water levels calculated with computer program STLK1 or STWT1 to measured ground-water levels. The analytical models are used to estimate hydraulic properties of the aquifer, aquitard, and streambank; to evaluate hydrologic conditions in the aquifer; and to estimate seepage rates and bank-storage volumes resulting from flood waves and recharge. Analysis of field examples demonstrates the accuracy and limitations of the analytical solutions and programs when applied to actual ground-water systems and the potential uses of the analytical methods as alternatives to numerical modeling for quantifying stream-aquifer interactions.

Cell-type specific features of circular RNA expression.

PubMed

Salzman, Julia; Chen, Raymond E; Olsen, Mari N; Wang, Peter L; Brown, Patrick O

2013-01-01

Thousands of loci in the human and mouse genomes give rise to circular RNA transcripts; at many of these loci, the predominant RNA isoform is a circle. Using an improved computational approach for circular RNA identification, we found widespread circular RNA expression in Drosophila melanogaster and estimate that in humans, circular RNA may account for 1% as many molecules as poly(A) RNA. Analysis of data from the ENCODE consortium revealed that the repertoire of genes expressing circular RNA, the ratio of circular to linear transcripts for each gene, and even the pattern of splice isoforms of circular RNAs from each gene were cell-type specific. These results suggest that biogenesis of circular RNA is an integral, conserved, and regulated feature of the gene expression program.

Quantifying biomineralization of zinc in the Rio Naracauli (Sardinia, Italy), using a tracer injection and synoptic sampling

USGS Publications Warehouse

De Giudici, Giovanni; Wanty, Richard B.; Podda, F.; Kimball, Briant A.; Verplanck, Philip L.; Lattanzi, P.; Cidu, R.; Medas, D.

2014-01-01

Streams draining mined areas throughout the world commonly have high concentrations of Zn. Because Zn is not easily removed from stream water and because it can be toxic to aquatic organisms, its presence is a persistent problem. The discovery of biomineralization of Zn-bearing solids in the mine drainage of Rio Naracauli, in Sardinia, Italy, provides insights into strategies for removing Zn and improving water quality in streams affected by mine drainage. Until now, the transport and attenuation of Zn has not been quantified in this stream setting. A continuous tracer injection experiment was conducted to quantify the biomineralization process and to identify the loading of constituents that causes a change from precipitation of hydrozincite [Zn5(CO3)2(OH)6] in the upstream reach to precipitation of a Zn-silicate phase downstream. Based on the mass-load calculations derived from the tracer experiment, about 1.2 kg/day of Zn is sequestered in hydrozincite. This biomineralization represents nearly 90% removal of Zn. Other elements such as Pb and Cd also are sequestered, either in the hydrozincite, or in a separate phase that forms simultaneously. In the lower 600 m of the stream, where the Zn-silicate forms, as much as 0.7 kg/day Zn are sequestered in this solid, but additions of Zn to the stream from groundwater discharge lead to an overall increase in load in that portion of the Rio Naracauli.

Application of turbulence modeling to predict surface heat transfer in stagnation flow region of circular cylinder

NASA Technical Reports Server (NTRS)

Wang, Chi R.; Yeh, Frederick C.

1987-01-01

A theoretical analysis and numerical calculations for the turbulent flow field and for the effect of free-stream turbulence on the surface heat transfer rate of a stagnation flow are presented. The emphasis is on the modeling of turbulence and its augmentation of surface heat transfer rate. The flow field considered is the region near the forward stagnation point of a circular cylinder in a uniform turbulent mean flow. The free stream is steady and incompressible with a Reynolds number of the order of 10 to the 5th power and turbulence intensity of less than 5 percent. For this analysis, the flow field is divided into three regions: (1) a uniform free-stream region where the turbulence is homogeneous and isotropic; (2) an external viscid flow region where the turbulence is distorted by the variation of the mean flow velocity; and, (3) an anisotropic turbulent boundary layer region over the cylinder surface. The turbulence modeling techniques used are the kappa-epsilon two-equation model in the external flow region and the time-averaged turbulence transport equation in the boundary layer region. The turbulence double correlations, the mean velocity, and the mean temperature within the boundary layer are solved numerically from the transport equations. The surface heat transfer rate is calculated as functions of the free-stream turbulence longitudinal microlength scale, the turbulence intensity, and the Reynolds number.

Quantifying Urban Watershed Stressor Gradients and Evaluating How Different Land Cover Datasets Affect Stream Management

EPA Science Inventory

We used a gradient (divided into impervious cover categories), spatially-balanced, random design (1) to sample streams along an impervious cover gradient in a large coastal watershed, (2) to characterize relationships between water chemistry and land cover, and (3) to document di...

Large wood and in-stream habitat for juvenile coho salmon and larval lampreys in a Pacific Northwest stream

USGS Publications Warehouse

Gonzalez, Rosalinda; Dunham, Jason B.; Lightcap, Scott W.; McEnroe, Jeffery R.

2017-01-01

The influences of large wood on Pacific salmon are well-studied, but studies of nonsalmonid species such as lampreys are uncommon. To address this need, we evaluated the potential effects of large wood on larval lampreys (Pacific Lamprey, Entosphenus tridentatus; and potentially Western Brook Lamprey Lampetra richardsoni), as well as juvenile Coho Salmon Oncorhynchus kisutch, in a small coastal Oregon stream. Our objectives were to 1) identify in-stream habitat characteristics associated with the presence of larval lampreys and abundance of juvenile Coho Salmon; and 2) evaluate how these characteristics were associated with in-stream wood. To address habitat use, we quantified presence of larval lampreys in 92 pools and abundance of juvenile Coho Salmon in 44 pools during summer low flows. We focused on a study reach where large wood was introduced into the stream between 2008 and 2009. Results indicated that presence of larval lampreys was significantly associated with availability of fine sediment and deeper substrate. The abundance of juvenile Coho Salmon (fish/pool) was strongly associated with pool surface area and to a weaker extent with the proportion of cobble and boulder substrates in pools. Pools with wood, regardless of whether they were formed by wood, had significantly greater coverage of fine sediment, deeper substrate, and greater pool surface area. Taken together, these results suggest that in-stream wood can provide habitat associated with presence of larval lampreys and greater abundance of juvenile Coho Salmon.

Impact of storm events on the structure of a stream microbiome

EPA Science Inventory

The microbial structural and/or functional state in a stream community is assumed to be in relative stasis until a perturbation (e.g., runoff event with entrained pollutants) affects the community structure and its functional state. Quantifying these changes and resolving the spe...

Predictive modeling of transient storage and nutrient uptake: Implications for stream restoration

USGS Publications Warehouse

O'Connor, Ben L.; Hondzo, Miki; Harvey, Judson W.

2010-01-01

This study examined two key aspects of reactive transport modeling for stream restoration purposes: the accuracy of the nutrient spiraling and transient storage models for quantifying reach-scale nutrient uptake, and the ability to quantify transport parameters using measurements and scaling techniques in order to improve upon traditional conservative tracer fitting methods. Nitrate (NO3–) uptake rates inferred using the nutrient spiraling model underestimated the total NO3– mass loss by 82%, which was attributed to the exclusion of dispersion and transient storage. The transient storage model was more accurate with respect to the NO3– mass loss (±20%) and also demonstrated that uptake in the main channel was more significant than in storage zones. Conservative tracer fitting was unable to produce transport parameter estimates for a riffle-pool transition of the study reach, while forward modeling of solute transport using measured/scaled transport parameters matched conservative tracer breakthrough curves for all reaches. Additionally, solute exchange between the main channel and embayment surface storage zones was quantified using first-order theory. These results demonstrate that it is vital to account for transient storage in quantifying nutrient uptake, and the continued development of measurement/scaling techniques is needed for reactive transport modeling of streams with complex hydraulic and geomorphic conditions.

Cell-Type Specific Features of Circular RNA Expression

PubMed Central

Salzman, Julia; Chen, Raymond E.; Olsen, Mari N.; Wang, Peter L.; Brown, Patrick O.

2013-01-01

Thousands of loci in the human and mouse genomes give rise to circular RNA transcripts; at many of these loci, the predominant RNA isoform is a circle. Using an improved computational approach for circular RNA identification, we found widespread circular RNA expression in Drosophila melanogaster and estimate that in humans, circular RNA may account for 1% as many molecules as poly(A) RNA. Analysis of data from the ENCODE consortium revealed that the repertoire of genes expressing circular RNA, the ratio of circular to linear transcripts for each gene, and even the pattern of splice isoforms of circular RNAs from each gene were cell-type specific. These results suggest that biogenesis of circular RNA is an integral, conserved, and regulated feature of the gene expression program. PMID:24039610

Quantifying the non-Gaussianity in the EoR 21-cm signal through bispectrum

NASA Astrophysics Data System (ADS)

Majumdar, Suman; Pritchard, Jonathan R.; Mondal, Rajesh; Watkinson, Catherine A.; Bharadwaj, Somnath; Mellema, Garrelt

2018-05-01

The epoch of reionization (EoR) 21-cm signal is expected to be highly non-Gaussian in nature and this non-Gaussianity is also expected to evolve with the progressing state of reionization. Therefore the signal will be correlated between different Fourier modes (k). The power spectrum will not be able capture this correlation in the signal. We use a higher order estimator - the bispectrum - to quantify this evolving non-Gaussianity. We study the bispectrum using an ensemble of simulated 21-cm signal and with a large variety of k triangles. We observe two competing sources driving the non-Gaussianity in the signal: fluctuations in the neutral fraction (x_{H I}) field and fluctuations in the matter density field. We find that the non-Gaussian contribution from these two sources varies, depending on the stage of reionization and on which k modes are being studied. We show that the sign of the bispectrum works as a unique marker to identify which among these two components is driving the non-Gaussianity. We propose that the sign change in the bispectrum, when plotted as a function of triangle configuration cos θ and at a certain stage of the EoR can be used as a confirmative test for the detection of the 21-cm signal. We also propose a new consolidated way to visualize the signal evolution (with evolving \\bar{x}_{H I} or redshift), through the trajectories of the signal in a power spectrum and equilateral bispectrum i.e. P(k) - B(k, k, k) space.

Asymptotic theory of circular polarization memory.

PubMed

Dark, Julia P; Kim, Arnold D

2017-09-01

We establish a quantitative theory of circular polarization memory, which is the unexpected persistence of the incident circular polarization state in a strongly scattering medium. Using an asymptotic analysis of the three-dimensional vector radiative transfer equation (VRTE) in the limit of strong scattering, we find that circular polarization memory must occur in a boundary layer near the portion of the boundary on which polarized light is incident. The boundary layer solution satisfies a one-dimensional conservative scattering VRTE. Through a spectral analysis of this boundary layer problem, we introduce the dominant mode, which is the slowest-decaying mode in the boundary layer. To observe circular polarization memory for a particular set of optical parameters, we find that this dominant mode must pass three tests: (1) this dominant mode is given by the largest, discrete eigenvalue of a reduced problem that corresponds to Fourier mode k=0 in the azimuthal angle, and depends only on Stokes parameters U and V; (2) the polarization state of this dominant mode is largely circular polarized so that |V|≫|U|; and (3) the circular polarization of this dominant mode is maintained for all directions so that V is sign-definite. By applying these three tests to numerical calculations for monodisperse distributions of Mie scatterers, we determine the values of the size and relative refractive index when circular polarization memory occurs. In addition, we identify a reduced, scalar-like problem that provides an accurate approximation for the dominant mode when circular polarization memory occurs.

A framework to assess the impacts of climate change on stream health indicators in Michigan watersheds

NASA Astrophysics Data System (ADS)

Woznicki, S. A.; Nejadhashemi, A. P.; Tang, Y.; Wang, L.

2016-12-01

Climate change is projected to alter watershed hydrology and potentially amplify nonpoint source pollution transport. These changes have implications for fish and macroinvertebrates, which are often used as measures of aquatic ecosystem health. By quantifying the risk of adverse impacts to aquatic ecosystem health at the reach-scale, watershed climate change adaptation strategies can be developed and prioritized. The objective of this research was to quantify the impacts of climate change on stream health in seven Michigan watersheds. A process-based watershed model, the Soil and Water Assessment Tool (SWAT), was linked to adaptive neuro-fuzzy inferenced (ANFIS) stream health models. SWAT models were used to simulate reach-scale flow regime (magnitude, frequency, timing, duration, and rate of change) and water quality variables. The ANFIS models were developed based on relationships between the in-stream variables and sampling points of four stream health indicators: the fish index of biotic integrity (IBI), macroinvertebrate family index of biotic integrity (FIBI), Hilsenhoff biotic index (HBI), and number of Ephemeroptera, Plecoptera, and Trichoptera (EPT) taxa. The combined SWAT-ANFIS models extended stream health predictions to all watershed reaches. A climate model ensemble from the Coupled Model Intercomparison Project Phase 5 (CMIP5) was used to develop projections of changes to flow regime (using SWAT) and stream health indicators (using ANFIS) from a baseline of 1980-2000 to 2020-2040. Flow regime variables representing variability, duration of extreme events, and timing of low and high flow events were sensitive to changes in climate. The stream health indicators were relatively insensitive to changing climate at the watershed scale. However, there were many instances of individual reaches that were projected to experience declines in stream health. Using the probability of stream health decline coupled with the magnitude of the decline, maps of

Imaging photoelectron circular dichroism of chiral molecules by femtosecond multiphoton coincidence detection.

PubMed

Lehmann, C Stefan; Ram, N Bhargava; Powis, Ivan; Janssen, Maurice H M

2013-12-21

Here, we provide a detailed account of novel experiments employing electron-ion coincidence imaging to discriminate chiral molecules. The full three-dimensional angular scattering distribution of electrons is measured after photoexcitation with either left or right circular polarized light. The experiment is performed using a simplified photoelectron-photoion coincidence imaging setup employing only a single particle imaging detector. Results are reported applying this technique to enantiomers of the chiral molecule camphor after three-photon ionization by circularly polarized femtosecond laser pulses at 400 nm and 380 nm. The electron-ion coincidence imaging provides the photoelectron spectrum of mass-selected ions that are observed in the time-of-flight mass spectra. The coincident photoelectron spectra of the parent camphor ion and the various fragment ions are the same, so it can be concluded that fragmentation of camphor happens after ionization. We discuss the forward-backward asymmetry in the photoelectron angular distribution which is expressed in Legendre polynomials with moments up to order six. Furthermore, we present a method, similar to one-photon electron circular dichroism, to quantify the strength of the chiral electron asymmetry in a single parameter. The circular dichroism in the photoelectron angular distribution of camphor is measured to be 8% at 400 nm. The electron circular dichroism using femtosecond multiphoton excitation is of opposite sign and about 60% larger than the electron dichroism observed before in near-threshold one-photon ionization with synchrotron excitation. We interpret our multiphoton ionization as being resonant at the two-photon level with the 3s and 3p Rydberg states of camphor. Theoretical calculations are presented that model the photoelectron angular distribution from a prealigned camphor molecule using density functional theory and continuum multiple scattering X alpha photoelectron scattering calculations

Imaging photoelectron circular dichroism of chiral molecules by femtosecond multiphoton coincidence detection

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lehmann, C. Stefan; Ram, N. Bhargava; Janssen, Maurice H. M., E-mail: m.h.m.janssen@vu.nl

2013-12-21

Here, we provide a detailed account of novel experiments employing electron-ion coincidence imaging to discriminate chiral molecules. The full three-dimensional angular scattering distribution of electrons is measured after photoexcitation with either left or right circular polarized light. The experiment is performed using a simplified photoelectron-photoion coincidence imaging setup employing only a single particle imaging detector. Results are reported applying this technique to enantiomers of the chiral molecule camphor after three-photon ionization by circularly polarized femtosecond laser pulses at 400 nm and 380 nm. The electron-ion coincidence imaging provides the photoelectron spectrum of mass-selected ions that are observed in the time-of-flightmore » mass spectra. The coincident photoelectron spectra of the parent camphor ion and the various fragment ions are the same, so it can be concluded that fragmentation of camphor happens after ionization. We discuss the forward-backward asymmetry in the photoelectron angular distribution which is expressed in Legendre polynomials with moments up to order six. Furthermore, we present a method, similar to one-photon electron circular dichroism, to quantify the strength of the chiral electron asymmetry in a single parameter. The circular dichroism in the photoelectron angular distribution of camphor is measured to be 8% at 400 nm. The electron circular dichroism using femtosecond multiphoton excitation is of opposite sign and about 60% larger than the electron dichroism observed before in near-threshold one-photon ionization with synchrotron excitation. We interpret our multiphoton ionization as being resonant at the two-photon level with the 3s and 3p Rydberg states of camphor. Theoretical calculations are presented that model the photoelectron angular distribution from a prealigned camphor molecule using density functional theory and continuum multiple scattering X alpha photoelectron scattering calculations

Circular economy of plastic packaging: Current practice and perspectives in Austria.

PubMed

Van Eygen, Emile; Laner, David; Fellner, Johann

2018-02-01

Plastics, especially from packaging, have gained increasing attention in waste management, driving many policy initiatives to improve the circularity of these materials in the economy to increase resource efficiency. In this context, the EU has proposed increasing targets to encourage the recycling of (plastic) packaging. To accurately calculate the recycling rates, detailed information on the flows of plastic packaging is needed. Therefore, the aim of this paper is to quantitatively and qualitatively investigate the waste management system for plastic packaging in Austria in 2013 using material flow analysis, taking into account the used product types and the polymer composition. The results show that 300,000 ± 3% t/a (35 kg/cap·a) of waste plastic packaging were produced, mainly composed of large and small films and small hollow bodies, including PET bottles. Correspondingly, the polymer composition of the waste stream was dominated by LDPE (46% ± 6%), PET (19% ± 4%) and PP (14% ± 6%). 58% ± 3% was collected separately, and regarding the final treatment, 26% ± 7% of the total waste stream was recovered as re-granulates, whereas the rest was thermally recovered in waste-to-energy plants (40% ± 3%) and the cement industry (33% ± 6%). The targets set by the EU and Austria were reached comfortably, although to reach the proposed future target major technological steps regarding collection and sorting will be needed. However, the current calculation point of the targets, i.e. on the input side of the recycling plant, is not deemed to be fully in line with the overall objective of the circular economy, namely to keep materials in the economy and prevent losses. It is therefore recommended that the targets be calculated with respect to the actual output of the recycling process, provided that the quality of the output products is maintained, to accurately assess the performance of the waste management system. Copyright © 2017

Ecological Realism of US EPA Experimental Stream Facility ...

EPA Pesticide Factsheets

The USEPA’s Experimental Stream Facility (ESF) conducts meso-scale ecotoxicology studies that account for both structural and functional responses of whole stream communities to contaminants or other stressors. The 16 mesocosms of ESF are indoors and consist of a tiled run section (0.152 m W x 4.268 m L x 0.105 m D) that widens to a gravel riffle section (0.305 m W x 4.268 m L x 0.19 m D). They are intermediate size among studies reporting stream mesocosm results. Their set-up is unique for their size, with a high degree of engineering controls for continuous flow-through dose-response designs, yet fixed, chronic exposures to contaminants under conditions that quantifiably mimic real stream riffle/run habitat with consistent upstream renewal. With fifty standard operating procedures serving ESF studies, the background and boundary condition information is collected to determine the realism critical to the field relevance of the results. Parallel ex situ and in situ single species exposure formats including fish survival and fecundity metrics are also included. With this framework studies at ESF provide scientifically defensible evaluation of proposed aquatic life criteria. This presentation discusses the relevance and realism of USEPA's mesocosms studies conducted using the Experimental Stream Facility in Milford, OH within the context of understanding the role meso-scale results can play in validating aquatic life criteria for streams and, more generally, man

No evidence for behavioral responses to circularly polarized light in four scarab beetle species with circularly polarizing exocuticle.

PubMed

Blahó, Miklós; Egri, Adám; Hegedüs, Ramón; Jósvai, Júlia; Tóth, Miklós; Kertész, Krisztián; Biró, László Péter; Kriska, György; Horváth, Gábor

2012-02-28

The strongest known circular polarization of biotic origin is the left-circularly polarized (LCP) light reflected from the metallic shiny exocuticle of certain beetles of the family Scarabaeidae. This phenomenon has been discovered by Michelson in 1911. Although since 1955 it has been known that the human eye perceives a visual illusion when stimulated by circularly polarized (CP) light, it was discovered only recently that a stomatopod shrimp is able to perceive circular polarization. It is pertinent to suppose that scarab beetles reflecting LCP light in an optical environment (vegetation) being deficient in CP signals may also perceive circular polarization and use it to find each other (mate/conspecifics) as until now it has been believed. We tested this hypothesis in six choice experiments with several hundred individuals of four scarab species: Anomala dubia, Anomala vitis (Coleoptera, Scarabaeidae, Rutelinae), and Cetonia aurata, Potosia cuprea (Coleoptera, Scarabaeidae, Cetoniinae), all possessing left-circularly polarizing exocuticle. From the results of our experiments we conclude that the studied four scarab species are not attracted to CP light when feeding or looking for mate or conspecifics. We demonstrated that the light reflected by host plants of the investigated scarabs is circularly unpolarized. Our results finally solve a puzzle raised over one hundred years ago, when Michaelson discovered that scarab beetles reflect circularly polarized light. Copyright © 2011 Elsevier Inc. All rights reserved.

A Review on Data Stream Classification

NASA Astrophysics Data System (ADS)

Haneen, A. A.; Noraziah, A.; Wahab, Mohd Helmy Abd

2018-05-01

At this present time, the significance of data streams cannot be denied as many researchers have placed their focus on the research areas of databases, statistics, and computer science. In fact, data streams refer to some data points sequences that are found in order with the potential to be non-binding, which is generated from the process of generating information in a manner that is not stationary. As such the typical tasks of searching data have been linked to streams of data that are inclusive of clustering, classification, and repeated mining of pattern. This paper presents several data stream clustering approaches, which are based on density, besides attempting to comprehend the function of the related algorithms; both semi-supervised and active learning, along with reviews of a number of recent studies.

Effects of predators on fish and crayfish survival in intermittent streams

USGS Publications Warehouse

Dekar, Matthew P.; Magoulick, Daniel D.

2013-01-01

Predation from aquatic and terrestrial predators arc important factors structuring the size and depth distribution of aquatic prey. We conducted mesocosm and tethering experiments on Little Mulberry Creek in northwest Arkansas during low flows to examine the effects of predators on fish and crayfish survival in intermittent streams Using shallow artificial pools (10 cm deep) and predator exclusions, we tested the hypothesis that large-bodied fish are at greater risk from terrestrial predators in shallow habitats compared to small-bodied individuals. Twenty-four circular pools (12 open top. 12 closed top) were stocked with two size classes of Campostoma anomalum (Central Stonerller) and deployed systematically in a single stream pool. In addition, we used a crayfish tethering experiment to test the hypothesis that the survival of small and large crayfish is greater in shallow and deep habitats, respectively. We tethered two size classes of Orconectes meeki meeki (Meek's Crayfish) along shallow and deep transects in two adjacent stream pools and measured survival for 15 days. During both experiments, we monitored the presence or absence of predators by visual observation and from scat surveys. We demonstrated a negative effect of terrestrial predators on Central Stonerller survival in the artificial pools, and larger individuals were more susceptible to predation. In contrast, small crayfish experienced low survival at all depths and large crayfish were preyed upon much less intensively during the tethering study, particularly in the pool with larger substrate. More studies are needed to understand how stream drying and environmental heterogeneity influence the complex interactions between predator and prey populations in intermittent streams.

Tropical small streams are a consistent source of methane

NASA Astrophysics Data System (ADS)

Vihermaa, Leena; Waldron, Susan

2013-04-01

To date only a few studies have quantified diffusive methane emissions from headwater streams therefore the magnitude and seasonal variation of these emissions remain poorly understood. Here we present results from two Western Amazonian small streams (first and second order) in Tambopata National Reserve, Peru. Towards the end of wet season, April-May 2012, the streams were sampled using a static floating chamber to accumulate methane. Samples were drawn from the headspace twice daily over period of four days on three separate occasions. The methane concentrations were analysed using a gas chromatograph and the linear part of concentration increase used to calculate the flux rates. The streams were consistently outgassing methane. The seasonally active first order stream outgassed 6 ±2.4 nmol CH4-C m-2 s-1 and the second order stream 20 ±4.0 nmol CH4-C m-2 s-1. The latter flux rate is comparable to fluxes measured from seasonally flooded Amazonian forest in previous studies. The range measured in our streams is comparable to previous results in temperate streams and the lower end of fluxes observed in some peatland streams. The only other study on Amazonian small streams detected methane fluxes that were 100 times greater than those measured here. Depending on the density of small streams in Amazonian basin and the prevalent flux rate, the fluvial methane fluxes may constitute a significant global warming potential. Upscaling to the Amazon basin, assuming small stream density of 0.2 %, as was found at our field site, and the flux rates detected, yields an annual global warming potential equal to approximately 1.5 Mt of CO2 which is of minor importance compared to aquatic CO2-C flux of 500 Mt yr-1 from the basin. However, if the higher fluxes detected in the previous study were prevalent, the basin wide methane flux could become significant. Further studies are needed to establish the stream density in the Amazon basin and typical methane flux rates.

Engineering of the institutionalization of the circular economy at the level of casting production

NASA Astrophysics Data System (ADS)

Vescan, M. M.; Soporan, V. F.; Crișan, D. M.; Lehene, T. R.; Pădurețu, S.; Samuila, V.

2017-06-01

This paper is motivated by the necessity of introducing the principles of circular economy at the level of different social - economic activities, and from this point of view one of the fields with a special potential is that of the manufacture of castings. Objective: to connect to the organizing and application of the methodology of the circular economy principles. The proposed method is an innovating one, being connected to the use of institutionalization engineering. Formulating the subject: The subject formulated to be solved aims at the introduction of new approaches, defined through institutionalization engineering, which proposes to set the correlation of actions between the specifics of the circular economy and the specific elements of the manufacture of castings. Research method: An institutional structuring operation was imposed for the optimization of the research method, in which different versions interact at the following levels: the level of public policies, the level of the regulatory framework, the level of technical solutions and the level of financing solutions and financial instruments. The determination of the optimal solution established in a dynamic context, favorable for the requirements of the different actors present within the process, appeals to the elements of critical thinking, specific for the engineer’s actions. Achievement of the research activity: The research activity structures a methodology of quantifying the contributions of each stage of the manufacturing process for castings at the fulfilling of the specific conditions of the circular economy, indicating the critical areas of action for more efficient actions of the circular economy, according to the market economy requirements, where there is a potential of implementing the technical solutions by quantizing the financial solutions and the opportunity of using the financial instruments. The major contribution of the research: The proposed methodology, with examples at the

WIYN Open Cluster Study: Binary Orbits and Tidal Circularization in NGC 6819

NASA Astrophysics Data System (ADS)

Morscher, Meagan B.; Mathieu, R. D.; Kaeppler, S.; Hole, K. T.; Meibom, S.

2006-12-01

We are conducting a comprehensive stellar radial-velocity survey in NGC 6819, a rich, intermediate age ( 2.4 Gyr) open cluster with [Fe/H] -0.05. As of October 2006, we have obtained 7065 radial-velocity measurements of 1409 stars using the WIYN Hydra Multi-Object Spectrograph, with typical velocity measurement precisions of 0.4 km/s. Using an E/I criterion of 3, we have identified 282 velocity variables. In the past year we have expanded the number of final orbital solutions by 45 to a total of more than 80 solutions. In coeval stellar populations, circular binaries tend to have the shortest orbital periods, while longer period binaries show a distribution of non-zero eccentricities. The circularization of the shortest period orbits is the result of an exchange of stellar and orbital angular momentum due to tidal interactions. We defined a population’s tidal circularization period as the longest orbital period at which a binary of typical initial eccentricity has become circularized (e.g., has evolved to an eccentricity e = 0.01) over the lifetime of the cluster (Meibom & Mathieu, 2005, ApJ, 620, 970). We are studying the trend of increasing tidal circularization periods with population age. Preliminary results in NGC 6819 indicate a tidal circularization period of 7.5 days, which is consistent with this overall trend. We will recalculate the tidal circularization period in order to include the latest sample of orbital solutions. This comprehensive survey also allows us to investigate the relative spatial distributions of spectroscopic binaries and other constant-velocity cluster members of similar mass. We find the spectroscopic binaries to be more centrally concentrated at a statistically significant level, which we attribute to energy equipartition processes. MM was supported by REU NSF grant AST-0453442. RDM, SK, KTH, and SM were supported by NSF grant AST-0406615.

Twitter and Non-Elites: Interpreting Power Dynamics in the Life Story of the (#)BRCA Twitter Stream.

PubMed

Vicari, Stefania

2017-09-01

In May 2013 and March 2015, actress Angelina Jolie wrote in the New York Times about her choice to undergo preventive surgery. In her two op-eds, she explained that - as a carrier of the BRCA1 gene mutation - preventive surgery was the best way to lower her heightened risk of developing breast and ovarian cancer. By applying a digital methods approach to BRCA-related tweets from 2013 and 2015, before, during, and after the exposure of Jolie's story, this study maps and interprets Twitter discursive dynamics at two time points of the BRCA Twitter stream. Findings show an evolution in curation and framing dynamics occurring between 2013 and 2015, with individual patient advocates replacing advocacy organizations as top curators of BRCA content and coming to prominence as providers of specialist illness narratives. These results suggest that between 2013 and 2015, Twitter went from functioning primarily as an organization-centered news reporting mechanism, to working as a crowdsourced specialist awareness system. This article advances a twofold contribution. First, it points at Twitter's fluid functionality for an issue public and suggests that by looking at the life story-rather than at a single time point-of an issue-based Twitter stream, we can track the evolution of power roles underlying discursive practices and better interpret the emergence of non-elite actors in the public arena. Second, the study provides evidence of the rise of activist cultures that rely on fluid, non-elite, collective, and individual social media engagement.

Circular permutant GFP insertion folding reporters

DOEpatents

Waldo, Geoffrey S [Santa Fe, NM; Cabantous, Stephanie [Los Alamos, NM

2008-06-24

Provided are methods of assaying and improving protein folding using circular permutants of fluorescent proteins, including circular permutants of GFP variants and combinations thereof. The invention further provides various nucleic acid molecules and vectors incorporating such nucleic acid molecules, comprising polynucleotides encoding fluorescent protein circular permutants derived from superfolder GFP, which polynucleotides include an internal cloning site into which a heterologous polynucleotide may be inserted in-frame with the circular permutant coding sequence, and which when expressed are capable of reporting on the degree to which a polypeptide encoded by such an inserted heterologous polynucleotide is correctly folded by correlation with the degree of fluorescence exhibited.

Circular permutant GFP insertion folding reporters

DOEpatents

Waldo, Geoffrey S; Cabantous, Stephanie

2013-02-12

Provided are methods of assaying and improving protein folding using circular permutants of fluorescent proteins, including circular permutants of GFP variants and combinations thereof. The invention further provides various nucleic acid molecules and vectors incorporating such nucleic acid molecules, comprising polynucleotides encoding fluorescent protein circular permutants derived from superfolder GFP, which polynucleotides include an internal cloning site into which a heterologous polynucleotide may be inserted in-frame with the circular permutant coding sequence, and which when expressed are capable of reporting on the degree to which a polypeptide encoded by such an inserted heterologous polynucleotide is correctly folded by correlation with the degree of fluorescence exhibited.

Circular permutant GFP insertion folding reporters

DOEpatents

Waldo, Geoffrey S [Santa Fe, NM; Cabantous, Stephanie [Los Alamos, NM

2011-06-14

Provided are methods of assaying and improving protein folding using circular permutants of fluorescent proteins, including circular permutants of GFP variants and combinations thereof. The invention further provides various nucleic acid molecules and vectors incorporating such nucleic acid molecules, comprising polynucleotides encoding fluorescent protein circular permutants derived from superfolder GFP, which polynucleotides include an internal cloning site into which a heterologous polynucleotide may be inserted in-frame with the circular permutant coding sequence, and which when expressed are capable of reporting on the degree to which a polypeptide encoded by such an inserted heterologous polynucleotide is correctly folded by correlation with the degree of fluorescence exhibited.

Circular permutant GFP insertion folding reporters

DOEpatents

Waldo, Geoffrey S.; Cabantous, Stephanie

2013-04-16

Provided are methods of assaying and improving protein folding using circular permutants of fluorescent proteins, including circular permutants of GFP variants and combinations thereof. The invention further provides various nucleic acid molecules and vectors incorporating such nucleic acid molecules, comprising polynucleotides encoding fluorescent protein circular permutants derived from superfolder GFP, which polynucleotides include an internal cloning site into which a heterologous polynucleotide may be inserted in-frame with the circular permutant coding sequence, and which when expressed are capable of reporting on the degree to which a polypeptide encoded by such an inserted heterologous polynucleotide is correctly folded by correlation with the degree of fluorescence exhibited.

Removing sulphur oxides from a fluid stream

DOEpatents

Katz, Torsten; Riemann, Christian; Bartling, Karsten; Rigby, Sean Taylor; Coleman, Luke James Ivor; Lail, Marty Alan

2014-04-08

A process for removing sulphur oxides from a fluid stream, such as flue gas, comprising: providing a non-aqueous absorption liquid containing at least one hydrophobic amine, the liquid being incompletely miscible with water; treating the fluid stream in an absorption zone with the non-aqueous absorption liquid to transfer at least part of the sulphur oxides into the non-aqueous absorption liquid and to form a sulphur oxide-hydrophobic amine-complex; causing the non-aqueous absorption liquid to be in liquid-liquid contact with an aqueous liquid whereby at least part of the sulphur oxide-hydrophobic amine-complex is hydrolyzed to release the hydrophobic amine and sulphurous hydrolysis products, and at least part of the sulphurous hydrolysis products is transferred into the aqueous liquid; separating the aqueous liquid from the non-aqueous absorption liquid. The process mitigates absorbent degradation problems caused by sulphur dioxide and oxygen in flue gas.

In‐stream sorption of fulvic acid in an acidic stream: A stream‐scale transport experiment

USGS Publications Warehouse

McKnight, Diane M.; Hornberger, George M.; Bencala, Kenneth E.; Boyer, Elizabeth W.

2002-01-01

The variation of concentration and composition of dissolved organic carbon (DOC) in stream waters cannot be explained solely on the basis of soil processes in contributing subcatchments. To investigate in‐stream processes that control DOC, we injected DOC‐enriched water into a reach of the Snake River (Summit County, Colorado) that has abundant iron oxyhydroxides coating the streambed. The injected water was obtained from the Suwannee River (Georgia), which is highly enriched in fulvic acid. The fulvic acid from this water is the standard reference for aquatic fulvic acid for the International Humic Substances Society and has been well characterized. During the experimental injection, significant removal of sorbable fulvic acid occurred within the first 141 m of stream reach. We coinjected a conservative tracer (lithium chloride) and analyzed the results with the one‐dimensional transport with inflow and storage (OTIS) stream solute transport model to quantify the physical transport mechanisms. The downstream transport of fulvic acid as indicated by absorbance was then simulated using OTIS with a first‐order kinetic sorption rate constant applied to the sorbable fulvic acid. The “sorbable” fraction of injected fulvic acid was irreversibly sorbed by streambed sediments at rates (kinetic rate constants) of the order of 10−4–10−3 s−1. In the injected Suwannee River water, sorbable and nonsorbable fulvic acid had distinct chemical characteristics identified in 13C‐NMR spectra. The 13C‐NMR spectra indicate that during the experiment, the sorbable “signal” of greater aromaticity and carboxyl content decreased downstream; that is, these components were preferentially removed. This study illustrates that interactions between the water and the reactive surfaces will modify significantly the concentration and composition of DOC observed in streams with abundant chemically reactive surfaces on the streambed and in the hyporheic zone.

Cylindrical acoustic levitator/concentrator having non-circular cross-section

DOEpatents

Kaduchak, Gregory; Sinha, Dipen N.

2003-11-11

A low-power, inexpensive acoustic apparatus for levitation and/or concentration of aerosols and small liquid/solid samples having particulates up to several millimeters in diameter in air or other fluids is described. It is constructed from a commercially available, hollow piezoelectric crystal which has been formed with a cylindrical cross-section to tune the resonance frequency of the breathing mode resonance of the crystal to that of the interior cavity of the cylinder. When the resonance frequency of the interior cylindrical cavity is matched to the breathing mode resonance of the cylindrical piezoelectric transducer, the acoustic efficiency for establishing a standing wave pattern in the cavity is high. By deforming the circular cross-section of the transducer, the acoustic force is concentrated along axial regions parallel to the axis of the transducer. The cylinder does not require accurate alignment of a resonant cavity. The concentrated regions of acoustic force cause particles in the fluid to concentrate within the regions of acoustic force for separation from the fluid.

Factors related to the joint probability of flooding on paired streams

USGS Publications Warehouse

Koltun, G.F.; Sherwood, J.M.

1998-01-01

The factors related to the joint probabilty of flooding on paired streams were investigated and quantified to provide information to aid in the design of hydraulic structures where the joint probabilty of flooding is an element of the design criteria. Stream pairs were considered to have flooded jointly at the design-year flood threshold (corresponding to the 2-, 10-, 25-, or 50-year instantaneous peak streamflow) if peak streamflows at both streams in the pair were observed or predicted to have equaled or exceeded the threshold on a given calendar day. Daily mean streamflow data were used as a substitute for instantaneous peak streamflow data to determine which flood thresholds were equaled or exceeded on any given day. Instantaneous peak streamflow data, when available, were used preferentially to assess flood-threshold exceedance. Daily mean streamflow data for each stream were paired with concurrent daily mean streamflow data at the other streams. Observed probabilities of joint flooding, determined for the 2-, 10-, 25-, and 50-year flood thresholds, were computed as the ratios of the total number of days when streamflows at both streams concurrently equaled or exceeded their flood thresholds (events) to the total number of days where streamflows at either stream equaled or exceeded its flood threshold (trials). A combination of correlation analyses, graphical analyses, and logistic-regression analyses were used to identify and quantify factors associated with the observed probabilities of joint flooding (event-trial ratios). The analyses indicated that the distance between drainage area centroids, the ratio of the smaller to larger drainage area, the mean drainage area, and the centroid angle adjusted 30 degrees were the basin characteristics most closely associated with the joint probabilty of flooding on paired streams in Ohio. In general, the analyses indicated that the joint probabilty of flooding decreases with an increase in centroid distance and

Quantifying the Urban and Rural Nutrient Fluxes to Lake Erie Using a Paired Watershed Approach

NASA Astrophysics Data System (ADS)

Hopkins, M.; Beck, M.; Rossi, E.; Luh, N.; Allen-King, R. M.; Lowry, C.

2016-12-01

Excess nutrients have a detrimental impact on the water quality of Lake Erie, specifically nitrate and phosphate, which can lead to toxic algae blooms. Algae blooms have negatively impacted Lake Erie, which is the main source of drinking water for many coastal Great Lake communities. In 2014 the city of Toledo, Ohio was forced to shut down its water treatment plant due to these toxic algae blooms. The objective of this research is to quantify surface water nutrient fluxes to the eastern basin of Lake Erie using a paired watershed approach. Three different western New York watersheds that feed Lake Erie were chosen based on land use and areal extent: one small urban, one small rural, and one large rural. These paired watersheds were chosen to represent a range of sources of potential nutrient loading to the lake. Biweekly water samples were taken from the streams during the 2015-2016 winter to summer seasonal transition to quantify springtime snow melt effects on nutrient fluxes. These results were compared to the previous year samples, collected over the summer of 2015, which represented wetter conditions. Phosphorous levels were assessed using the ascorbic acid colorimetric assay, while nitrate was analyzed by anion-exchange chromatography. Stream gaging was used to obtain flow measurements and establish a rating curve, which was incorporated to quantify seasonal nutrient fluxes entering the lake. Patterns in the nutrient levels show higher level of nutrients in the rural watersheds with a decrease in concentration over the winter to spring transition. However, nutrient patterns in the urban stream show relatively constant patters of nutrient flux, which is independent of seasonal transition or stream discharge. A comparison of wet and dry seasons shows higher nutrient concentrations during summers with greater rainfall. By identifying the largest contributors of each nutrient, we can better allocate limited attenuation resources.

Quantifying the fate of agricultural nitrogen in an unconfined aquifer: Stream-based observations at three measurement scales

NASA Astrophysics Data System (ADS)

Gilmore, Troy E.; Genereux, David P.; Solomon, D. Kip; Solder, John E.; Kimball, Briant A.; Mitasova, Helena; Birgand, François

2016-03-01

We compared three stream-based sampling methods to study the fate of nitrate in groundwater in a coastal plain watershed: point measurements beneath the streambed, seepage blankets (novel seepage-meter design), and reach mass-balance. The methods gave similar mean groundwater seepage rates into the stream (0.3-0.6 m/d) during two 3-4 day field campaigns despite an order of magnitude difference in stream discharge between the campaigns. At low flow, estimates of flow-weighted mean nitrate concentrations in groundwater discharge ([NO3-]FWM) and nitrate flux from groundwater to the stream decreased with increasing degree of channel influence and measurement scale, i.e., [NO3-]FWM was 654, 561, and 451 µM for point, blanket, and reach mass-balance sampling, respectively. At high flow the trend was reversed, likely because reach mass-balance captured inputs from shallow transient high-nitrate flow paths while point and blanket measurements did not. Point sampling may be better suited to estimating aquifer discharge of nitrate, while reach mass-balance reflects full nitrate inputs into the channel (which at high flow may be more than aquifer discharge due to transient flow paths, and at low flow may be less than aquifer discharge due to channel-based nitrate removal). Modeling dissolved N2 from streambed samples suggested (1) about half of groundwater nitrate was denitrified prior to discharge from the aquifer, and (2) both extent of denitrification and initial nitrate concentration in groundwater (700-1300 µM) were related to land use, suggesting these forms of streambed sampling for groundwater can reveal watershed spatial relations relevant to nitrate contamination and fate in the aquifer.

The GALAH Survey: Stellar streams and how stellar velocity distributions vary with Galactic longitude, hemisphere and metallicity

NASA Astrophysics Data System (ADS)

Quillen, Alice C.; De Silva, Gayandhi; Sharma, Sanjib; Hayden, Michael; Freeman, Ken; Bland-Hawthorn, Joss; Žerjal, Maruša; Asplund, Martin; Buder, Sven; D'Orazi, Valentina; Duong, Ly; Kos, Janez; Lin, Jane; Lind, Karin; Martell, Sarah; Schlesinger, Katharine; Simpson, Jeffrey D.; Zucker, Daniel B.; Zwitter, Tomaz; Anguiano, Borja; Carollo, Daniela; Casagrande, Luca; Cotar, Klemen; Cottrell, Peter L.; Ireland, Michael; Kafle, Prajwal R.; Horner, Jonathan; Lewis, Geraint F.; Nataf, David M.; Ting, Yuan-Sen; Watson, Fred; Wittenmyer, Rob; Wyse, Rosemary

2018-04-01

Using GALAH survey data of nearby stars, we look at how structure in the planar (u, v) velocity distribution depends on metallicity and on viewing direction within the Galaxy. In nearby stars with distance d ≲ 1 kpc, the Hercules stream is most strongly seen in higher metallicity stars [Fe/H]>0.2. The Hercules stream peak v value depends on viewed galactic longitude, which we interpret as due to the gap between the stellar stream and more circular orbits being associated with a specific angular momentum value of about 1640 km s-1 kpc. The association of the gap with a particular angular momentum value supports a bar resonant model for the Hercules stream. Moving groups previously identified in Hipparcos observations are easiest to see in stars nearer than 250 pc, and their visibility and peak velocities in the velocity distributions depends on both viewing direction (galactic longitude and hemisphere) and metallicity. We infer that there is fine structure in local velocity distributions that varies over distances of a few hundred pc in the Galaxy.

Energy levels of a quantum particle on a cylindrical surface with non-circular cross-section in electric and magnetic fields

NASA Astrophysics Data System (ADS)

Cruz, Philip Christopher S.; Bernardo, Reginald Christian S.; Esguerra, Jose Perico H.

2017-04-01

We calculate the energy levels of a quantum particle on a cylindrical surface with non-circular cross-section in uniform electric and magnetic fields. Using separation of variables method and a change of independent variable, we show that the problem can be reduced to a one-dimensional Schrödinger equation for a periodic potential. The effects of varying the shape of the cross-section while keeping the same perimeter and the strengths of the electric and magnetic fields are investigated for elliptical, corrugated, and nearly-rectangular tubes with radial dimensions of the order of a nanometer. The geometric potential has minima at the angular positions where there is a significant amount of curvature. For the elliptical and corrugated tubes, it is shown that as the tube departs from the circular shape of cross-section the double-degeneracy between the energy levels is lifted. For the nearly-rectangular tube, it is shown that energy level crossings occur as the horizontal dimension of the tube is varied while keeping the same perimeter and radius of circular corners. The interplay between the curvature and the strength of the electric and magnetic fields determines the overall behavior of the energy levels. As the strength of the electric field increases, the overall potential gets skewed creating a potential well on the side corresponding to the more negative electric potential. The energy levels of the first few excited states approach more positive values while the ground state energy level approaches a more negative value. For large electric fields, all bound state energy levels tend to more negative values. The contribution of weak magnetic fields to the overall potential behaves in the same way as the electric field contribution but with its sign depending on the direction of the component of the momentum parallel to the cylindrical axis. Large magnetic fields lead to pairing of energy levels reminiscent of 2D Landau levels for the elliptical and nearly

Energy levels of a quantum particle on a cylindrical surface with non-circular cross-section in electric and magnetic fields

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cruz, Philip Christopher S., E-mail: pscruz1@up.edu.ph; Bernardo, Reginald Christian S., E-mail: rcbernardo@nip.upd.edu.ph; Esguerra, Jose Perico H., E-mail: jesguerra@nip.upd.edu.ph

We calculate the energy levels of a quantum particle on a cylindrical surface with non-circular cross-section in uniform electric and magnetic fields. Using separation of variables method and a change of independent variable, we show that the problem can be reduced to a one-dimensional Schrödinger equation for a periodic potential. The effects of varying the shape of the cross-section while keeping the same perimeter and the strengths of the electric and magnetic fields are investigated for elliptical, corrugated, and nearly-rectangular tubes with radial dimensions of the order of a nanometer. The geometric potential has minima at the angular positions wheremore » there is a significant amount of curvature. For the elliptical and corrugated tubes, it is shown that as the tube departs from the circular shape of cross-section the double-degeneracy between the energy levels is lifted. For the nearly-rectangular tube, it is shown that energy level crossings occur as the horizontal dimension of the tube is varied while keeping the same perimeter and radius of circular corners. The interplay between the curvature and the strength of the electric and magnetic fields determines the overall behavior of the energy levels. As the strength of the electric field increases, the overall potential gets skewed creating a potential well on the side corresponding to the more negative electric potential. The energy levels of the first few excited states approach more positive values while the ground state energy level approaches a more negative value. For large electric fields, all bound state energy levels tend to more negative values. The contribution of weak magnetic fields to the overall potential behaves in the same way as the electric field contribution but with its sign depending on the direction of the component of the momentum parallel to the cylindrical axis. Large magnetic fields lead to pairing of energy levels reminiscent of 2D Landau levels for the elliptical and

Disease on nursery stock as affected by environmental factors and seasonal inoculum levels of Phytophthora ramorum in stream water used for irrigation

Treesearch

S.A. Tjosvold; D.L. Chambers; S.T. Koike; S.R. Mori

2008-01-01

A pear bait monitoring system was used to detect and quantify Phytophthora ramorum propagules in streams that flow through woodland areas with sudden oak death in Santa Cruz County, CA from 2001 to 2007. Stream propagules were detected most frequently or occurred in highest concentrations in winter and spring. The stream propagule concentration was...

Comparison of mercury mass loading in streams to atmospheric deposition in watersheds of Western North America: Evidence for non-atmospheric mercury sources.

PubMed

Domagalski, Joseph; Majewski, Michael S; Alpers, Charles N; Eckley, Chris S; Eagles-Smith, Collin A; Schenk, Liam; Wherry, Susan

2016-10-15

Annual stream loads of mercury (Hg) and inputs of wet and dry atmospheric Hg deposition to the landscape were investigated in watersheds of the Western United States and the Canadian-Alaskan Arctic. Mercury concentration and discharge data from flow gauging stations were used to compute annual mass loads with regression models. Measured wet and modeled dry deposition were compared to annual stream loads to compute ratios of Hg stream load to total Hg atmospheric deposition. Watershed land uses or cover included mining, undeveloped, urbanized, and mixed. Of 27 watersheds that were investigated, 15 had some degree of mining, either of Hg or precious metals (gold or silver), where Hg was used in the amalgamation process. Stream loads in excess of annual Hg atmospheric deposition (ratio>1) were observed in watersheds containing Hg mines and in relatively small and medium-sized watersheds with gold or silver mines, however, larger watersheds containing gold or silver mines, some of which also contain large dams that trap sediment, were sometimes associated with lower load ratios (<0.2). In the non-Arctic regions, watersheds with natural vegetation tended to have low ratios of stream load to Hg deposition (<0.1), whereas urbanized areas had higher ratios (0.34-1.0) because of impervious surfaces. This indicated that, in ecosystems with natural vegetation, Hg is retained in the soil and may be transported subsequently to streams as a result of erosion or in association with dissolved organic carbon. Arctic watersheds (Mackenzie and Yukon Rivers) had a relatively elevated ratio of stream load to atmospheric deposition (0.27 and 0.74), possibly because of melting glaciers or permafrost releasing previously stored Hg to the streams. Overall, our research highlights the important role of watershed characteristics in determining whether a landscape is a net source of Hg or a net sink of atmospheric Hg. Published by Elsevier B.V.

Comparison of mercury mass loading in streams to atmospheric deposition in watersheds of Western North America: Evidence for non-atmospheric mercury sources

USGS Publications Warehouse

Domagalski, Joseph L.; Majewski, Michael S.; Alpers, Charles N.; Eckley, Chris S.; Eagles-Smith, Collin A.; Schenk, Liam N.; Wherry, Susan

2016-01-01

Annual stream loads of mercury (Hg) and inputs of wet and dry atmospheric Hg deposition to the landscape were investigated in watersheds of the Western United States and the Canadian-Alaskan Arctic. Mercury concentration and discharge data from flow gauging stations were used to compute annual mass loads with regression models. Measured wet and modeled dry deposition were compared to annual stream loads to compute ratios of Hg stream load to total Hg atmospheric deposition. Watershed land uses or cover included mining, undeveloped, urbanized, and mixed. Of 27 watersheds that were investigated, 15 had some degree of mining, either of Hg or precious metals (gold or silver), where Hg was used in the amalgamation process. Stream loads in excess of annual Hg atmospheric deposition (ratio > 1) were observed in watersheds containing Hg mines and in relatively small and medium-sized watersheds with gold or silver mines, however, larger watersheds containing gold or silver mines, some of which also contain large dams that trap sediment, were sometimes associated with lower load ratios (< 0.2). In the non-Arctic regions, watersheds with natural vegetation tended to have low ratios of stream load to Hg deposition (< 0.1), whereas urbanized areas had higher ratios (0.34–1.0) because of impervious surfaces. This indicated that, in ecosystems with natural vegetation, Hg is retained in the soil and may be transported subsequently to streams as a result of erosion or in association with dissolved organic carbon. Arctic watersheds (Mackenzie and Yukon Rivers) had a relatively elevated ratio of stream load to atmospheric deposition (0.27 and 0.74), possibly because of melting glaciers or permafrost releasing previously stored Hg to the streams. Overall, our research highlights the important role of watershed characteristics in determining whether a landscape is a net source of Hg or a net sink of atmospheric Hg.

Groundwater declines are linked to changes in Great Plains stream fish assemblages

USGS Publications Warehouse

Prekins, Joshuah S.; Gido, Keith B.; Falke, Jeffrey A.; Fausch, Kurt D.; Crockett, Harry; Johnson, Eric R.; Sanderson, John

2017-01-01

Groundwater pumping for agriculture is a major driver causing declines of global freshwater ecosystems, yet the ecological consequences for stream fish assemblages are rarely quantified. We combined retrospective (1950–2010) and prospective (2011–2060) modeling approaches within a multiscale framework to predict change in Great Plains stream fish assemblages associated with groundwater pumping from the United States High Plains Aquifer. We modeled the relationship between the length of stream receiving water from the High Plains Aquifer and the occurrence of fishes characteristic of small and large streams in the western Great Plains at a regional scale and for six subwatersheds nested within the region. Water development at the regional scale was associated with construction of 154 barriers that fragment stream habitats, increased depth to groundwater and loss of 558 km of stream, and transformation of fish assemblage structure from dominance by large-stream to small-stream fishes. Scaling down to subwatersheds revealed consistent transformations in fish assemblage structure among western subwatersheds with increasing depths to groundwater. Although transformations occurred in the absence of barriers, barriers along mainstem rivers isolate depauperate western fish assemblages from relatively intact eastern fish assemblages. Projections to 2060 indicate loss of an additional 286 km of stream across the region, as well as continued replacement of large-stream fishes by small-stream fishes where groundwater pumping has increased depth to groundwater. Our work illustrates the shrinking of streams and homogenization of Great Plains stream fish assemblages related to groundwater pumping, and we predict similar transformations worldwide where local and regional aquifer depletions occur.

Groundwater declines are linked to changes in Great Plains stream fish assemblages.

PubMed

Perkin, Joshuah S; Gido, Keith B; Falke, Jeffrey A; Fausch, Kurt D; Crockett, Harry; Johnson, Eric R; Sanderson, John

2017-07-11

Groundwater pumping for agriculture is a major driver causing declines of global freshwater ecosystems, yet the ecological consequences for stream fish assemblages are rarely quantified. We combined retrospective (1950-2010) and prospective (2011-2060) modeling approaches within a multiscale framework to predict change in Great Plains stream fish assemblages associated with groundwater pumping from the United States High Plains Aquifer. We modeled the relationship between the length of stream receiving water from the High Plains Aquifer and the occurrence of fishes characteristic of small and large streams in the western Great Plains at a regional scale and for six subwatersheds nested within the region. Water development at the regional scale was associated with construction of 154 barriers that fragment stream habitats, increased depth to groundwater and loss of 558 km of stream, and transformation of fish assemblage structure from dominance by large-stream to small-stream fishes. Scaling down to subwatersheds revealed consistent transformations in fish assemblage structure among western subwatersheds with increasing depths to groundwater. Although transformations occurred in the absence of barriers, barriers along mainstem rivers isolate depauperate western fish assemblages from relatively intact eastern fish assemblages. Projections to 2060 indicate loss of an additional 286 km of stream across the region, as well as continued replacement of large-stream fishes by small-stream fishes where groundwater pumping has increased depth to groundwater. Our work illustrates the shrinking of streams and homogenization of Great Plains stream fish assemblages related to groundwater pumping, and we predict similar transformations worldwide where local and regional aquifer depletions occur.

Groundwater declines are linked to changes in Great Plains stream fish assemblages

PubMed Central

Perkin, Joshuah S.; Gido, Keith B.; Falke, Jeffrey A.; Fausch, Kurt D.; Crockett, Harry; Johnson, Eric R.; Sanderson, John

2017-01-01

Groundwater pumping for agriculture is a major driver causing declines of global freshwater ecosystems, yet the ecological consequences for stream fish assemblages are rarely quantified. We combined retrospective (1950–2010) and prospective (2011–2060) modeling approaches within a multiscale framework to predict change in Great Plains stream fish assemblages associated with groundwater pumping from the United States High Plains Aquifer. We modeled the relationship between the length of stream receiving water from the High Plains Aquifer and the occurrence of fishes characteristic of small and large streams in the western Great Plains at a regional scale and for six subwatersheds nested within the region. Water development at the regional scale was associated with construction of 154 barriers that fragment stream habitats, increased depth to groundwater and loss of 558 km of stream, and transformation of fish assemblage structure from dominance by large-stream to small-stream fishes. Scaling down to subwatersheds revealed consistent transformations in fish assemblage structure among western subwatersheds with increasing depths to groundwater. Although transformations occurred in the absence of barriers, barriers along mainstem rivers isolate depauperate western fish assemblages from relatively intact eastern fish assemblages. Projections to 2060 indicate loss of an additional 286 km of stream across the region, as well as continued replacement of large-stream fishes by small-stream fishes where groundwater pumping has increased depth to groundwater. Our work illustrates the shrinking of streams and homogenization of Great Plains stream fish assemblages related to groundwater pumping, and we predict similar transformations worldwide where local and regional aquifer depletions occur. PMID:28652354

Primer-optimized results and trends for circular phasing and other circle-to-circle impulsive coplanar rendezvous

NASA Astrophysics Data System (ADS)

Sandrik, Suzannah

Optimal solutions to the impulsive circular phasing problem, a special class of orbital maneuver in which impulsive thrusts shift a vehicle's orbital position by a specified angle, are found using primer vector theory. The complexities of optimal circular phasing are identified and illustrated using specifically designed Matlab software tools. Information from these new visualizations is applied to explain discrepancies in locally optimal solutions found by previous researchers. Two non-phasing circle-to-circle impulsive rendezvous problems are also examined to show the applicability of the tools developed here to a broader class of problems and to show how optimizing these rendezvous problems differs from the circular phasing case.

Broadband Circularly Polarized Slot Antenna Loaded by a Multiple-Circular-Sector Patch.

PubMed

Trinh-Van, Son; Yang, Youngoo; Lee, Kang-Yoon; Hwang, Keum Cheol

2018-05-15

In this paper, a microstrip-fed broadband circularly polarized (CP) slot antenna is presented. CP operation can be attained simply by embedding an S-shaped strip. By loading with a multiple-circular-sector patch, which consists of 12 circular-sector patches with identical central angles of 30° and different radii, the 3 dB axial ratio (AR) bandwidth is significantly broadened. To validate the performance of the proposed antenna, an antenna prototype is fabricated and tested. The fabricated antenna is 54 mm × 54 mm × 0.8 mm in size. The measured -10 dB reflection and 3 dB AR bandwidths are 81.06% (1.68⁻3.97 GHz) and 70.55% (1.89⁻3.95 GHz), respectively. Within the 3 dB AR bandwidth, the measured peak gain is 3.81 dBic. Reasonable agreement is also obtained between the measured and simulated results.

Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types

PubMed Central

Wang, Peter Lincoln; Lacayo, Norman; Brown, Patrick O.

2012-01-01

Most human pre-mRNAs are spliced into linear molecules that retain the exon order defined by the genomic sequence. By deep sequencing of RNA from a variety of normal and malignant human cells, we found RNA transcripts from many human genes in which the exons were arranged in a non-canonical order. Statistical estimates and biochemical assays provided strong evidence that a substantial fraction of the spliced transcripts from hundreds of genes are circular RNAs. Our results suggest that a non-canonical mode of RNA splicing, resulting in a circular RNA isoform, is a general feature of the gene expression program in human cells. PMID:22319583

The risk of West Nile Virus infection is associated with combined sewer overflow streams in urban Atlanta, Georgia, USA.

PubMed

Vazquez-Prokopec, Gonzalo M; Vanden Eng, Jodi L; Kelly, Rosmarie; Mead, Daniel G; Kolhe, Priti; Howgate, James; Kitron, Uriel; Burkot, Thomas R

2010-10-01

At present, the factors favoring transmission and amplification of West Nile Virus (WNV) within urban environments are poorly understood. In urban Atlanta, Georgia, the highly polluted waters of streams affected by combined sewer overflow (CSO) represent significant habitats for the WNV mosquito vector Culex quinquefasciatus. However, their contribution to the risk of WNV infection in humans and birds remains unclear. Our goals were to describe and quantify the spatial distribution of WNV infection in mosquitoes, humans, and corvids, such as blue jays and American crows that are particularly susceptible to WNV infection, and to assess the relationship between WNV infection and proximity to CSO-affected streams in the city of Atlanta, Georgia. We applied spatial statistics to human, corvid, and mosquito WNV surveillance data from 2001 through 2007. Multimodel analysis was used to estimate associations of WNV infection in Cx. quinquefasciatus, humans, and dead corvids with selected risk factors including distance to CSO streams and catch basins, land cover, median household income, and housing characteristics. We found that WNV infection in mosquitoes, corvids, and humans was spatially clustered and statistically associated with CSO-affected streams. WNV infection in Cx. quinquefasciatus was significantly higher in CSO compared with non-CSO streams, and WNV infection rates among humans and corvids were significantly associated with proximity to CSO-affected streams, the extent of tree cover, and median household income. Our study strongly suggests that CSO-affected streams are significant sources of Cx. quinquefasciatus mosquitoes that may facilitate WNV transmission to humans within urban environments. Our findings may have direct implications for the surveillance and control of WNV in other urban centers that continue to use CSO systems as a waste management practice.

Evaluation of Deposited Sediment and Macroinvertebrate Metrics Used to Quantify Biological Response to Excessive Sedimentation in Agricultural Streams

NASA Astrophysics Data System (ADS)

Sutherland, Andrew B.; Culp, Joseph M.; Benoy, Glenn A.

2012-07-01

The objective of this study was to evaluate which macroinvertebrate and deposited sediment metrics are best for determining effects of excessive sedimentation on stream integrity. Fifteen instream sediment metrics, with the strongest relationship to land cover, were compared to riffle macroinvertebrate metrics in streams ranging across a gradient of land disturbance. Six deposited sediment metrics were strongly related to the relative abundance of Ephemeroptera, Plecoptera and Trichoptera and six were strongly related to the modified family biotic index (MFBI). Few functional feeding groups and habit groups were significantly related to deposited sediment, and this may be related to the focus on riffle, rather than reach-wide macroinvertebrates, as reach-wide sediment metrics were more closely related to human land use. Our results suggest that the coarse-level deposited sediment metric, visual estimate of fines, and the coarse-level biological index, MFBI, may be useful in biomonitoring efforts aimed at determining the impact of anthropogenic sedimentation on stream biotic integrity.

Evaluation of deposited sediment and macroinvertebrate metrics used to quantify biological response to excessive sedimentation in agricultural streams.

PubMed

Sutherland, Andrew B; Culp, Joseph M; Benoy, Glenn A

2012-07-01

The objective of this study was to evaluate which macroinvertebrate and deposited sediment metrics are best for determining effects of excessive sedimentation on stream integrity. Fifteen instream sediment metrics, with the strongest relationship to land cover, were compared to riffle macroinvertebrate metrics in streams ranging across a gradient of land disturbance. Six deposited sediment metrics were strongly related to the relative abundance of Ephemeroptera, Plecoptera and Trichoptera and six were strongly related to the modified family biotic index (MFBI). Few functional feeding groups and habit groups were significantly related to deposited sediment, and this may be related to the focus on riffle, rather than reach-wide macroinvertebrates, as reach-wide sediment metrics were more closely related to human land use. Our results suggest that the coarse-level deposited sediment metric, visual estimate of fines, and the coarse-level biological index, MFBI, may be useful in biomonitoring efforts aimed at determining the impact of anthropogenic sedimentation on stream biotic integrity.

The morphology of streams restored for market and nonmarket purposes: Insights from a mixed natural-social science approach

NASA Astrophysics Data System (ADS)

Doyle, Martin W.; Singh, Jai; Lave, Rebecca; Robertson, Morgan M.

2015-07-01

We use geomorphic surveys to quantify the differences between restored and nonrestored streams, and the difference between streams restored for market purposes (compensatory mitigation) from those restored for nonmarket programs. We also analyze the social and political-economic drivers of the stream restoration and mitigation industry using analysis of policy documents and interviews with key personnel including regulators, mitigation bankers, stream designers, and scientists. Restored streams are typically wider and geomorphically more homogenous than nonrestored streams. Streams restored for the mitigation market are typically headwater streams and part of a large, complex of long restored main channels, and many restored tributaries; streams restored for nonmarket purposes are typically shorter and consist of the main channel only. Interviews reveal that designers integrate many influences including economic and regulatory constraints, but traditions of practice have a large influence as well. Thus, social forces shape the morphology of restored streams.

Evidence for fish dispersal from spatial analysis of stream network topology

USGS Publications Warehouse

Hitt, N.P.; Angermeier, P.L.

2008-01-01

Developing spatially explicit conservation strategies for stream fishes requires an understanding of the spatial structure of dispersal within stream networks. We explored spatial patterns of stream fish dispersal by evaluating how the size and proximity of connected streams (i.e., stream network topology) explained variation in fish assemblage structure and how this relationship varied with local stream size. We used data from the US Environmental Protection Agency's Environmental Monitoring and Assessment Program in wadeable streams of the Mid-Atlantic Highlands region (n = 308 sites). We quantified stream network topology with a continuous analysis based on the rate of downstream flow accumulation from sites and with a discrete analysis based on the presence of mainstem river confluences (i.e., basin area >250 km2) within 20 fluvial km (fkm) from sites. Continuous variation in stream network topology was related to local species richness within a distance of ???10 fkm, suggesting an influence of fish dispersal within this spatial grain. This effect was explained largely by catostomid species, cyprinid species, and riverine species, but was not explained by zoogeographic regions, ecoregions, sampling period, or spatial autocorrelation. Sites near mainstem river confluences supported greater species richness and abundance of catostomid, cyprinid, and ictalurid fishes than did sites >20 fkm from such confluences. Assemblages at sites on the smallest streams were not related to stream network topology, consistent with the hypothesis that local stream size regulates the influence of regional dispersal. These results demonstrate that the size and proximity of connected streams influence the spatial distribution of fish and suggest that these influences can be incorporated into the designs of stream bioassessments and reserves to enhance management efficacy. ?? 2008 by The North American Benthological Society.

Riparian influences on stream fish assemblage structure in urbanizing streams

USGS Publications Warehouse

Roy, A.H.; Freeman, B.J.; Freeman, Mary C.

2007-01-01

We assessed the influence of land cover at multiple spatial extents on fish assemblage integrity, and the degree to which riparian forests can mitigate the negative effects of catchment urbanization on stream fish assemblages. Riparian cover (urban, forest, and agriculture) was determined within 30 m buffers at longitudinal distances of 200 m, 1 km, and the entire network upstream of 59 non-nested fish sampling locations. Catchment and riparian land cover within the upstream network were highly correlated, so we were unable to distinguish between those variables. Most fish assemblage variables were related to % forest and % urban land cover, with the strongest relations at the largest spatial extent of land cover (catchment), followed by riparian land cover in the 1-km and 200-m reach, respectively. For fish variables related to urban land cover in the catchment, we asked whether the influence of riparian land cover on fish assemblages was dependent on the amount of urban development in the catchment. Several fish assemblage metrics (endemic richness, endemic:cosmopolitan abundance, insectivorous cyprinid richness and abundance, and fluvial specialist richness) were all best predicted by single variable models with % urban land cover. However, endemic:cosmopolitan richness, cosmopolitan abundance, and lentic tolerant abundance were related to % forest cover in the 1-km stream reach, but only in streams that had <15% catchment urban land cover. In these cases, catchment urbanization overwhelmed the potential mitigating effects of riparian forests on stream fishes. Together, these results suggest that catchment land cover is an important driver of fish assemblages in urbanizing catchments, and riparian forests are important but not sufficient for protecting stream ecosystems from the impacts of high levels of urbanization.

Possible microplate generation at RRR triple junctions due to the non-circular finite motion of plates relative to each other

NASA Astrophysics Data System (ADS)

Cronin, V. S.

2012-12-01

First generation ideas of the kinematic stability of triple junctions lead to the common belief that the geometry of ridge-ridge-ridge (RRR) triple junctions remains constant over time under conditions of symmetric spreading. Given constant relative motion between each plate pair -- that is, the pole of plate relative motion is fixed to both plates in each pair during finite motion, as assumed in many accounts of plate kinematics -- there would be no boundary mismatch at the triple junction and no apparent kinematic reason why a microplate might develop there. But if, in a given RRR triple junction, the finite motion of one plate as observed from the other plate is not circular (as is generally the case, given the three-plate problem of plate kinematics), the geometry of the ridges and the triple junction will vary with time (Cronin, 1992, Tectonophys 207, 287-301). To explore the possible consequences of non-circular finite motion between plates at an RRR triple junction, a simple model was coded based on the cycloid finite-motion model (e.g., Cronin, 1987, Geology 15, 1006-1009) using NNR-MORVEL56 velocities for individual plates (Argus et al., 2011, G3 12, doi: 10.1029/2011GC003751). Initial assumptions include a spherical Earth, symmetric spreading, and constant angular velocities during the modeled finite time interval. The assumed-constant angular velocity vectors constitute a reference frame for observing finite plate motion. Typical results are [1] that the triple junction migrates relative to a coordinate system fixed to the angular-velocity vectors, [2] ridge axes rotates relative to each other, and [3] a boundary mismatch develops at the synthetic triple junction that might result in microplate nucleation. In a model simulating the Galapagos triple junction between the Cocos, Nazca and Pacific plates whose initial state did not include the Galapagos microplate, the mismatch gap was as much as ~3.4 km during 3 Myr of model displacement (see figure). The

Hyporheic zone denitrification: controls on effective reaction depth and contribution to whole-stream mass balance

USGS Publications Warehouse

Harvey, Judson W.; Böhlke, John Karl; Voytek, Mary A.; Scott, Durelle; Tobias, Craig R.

2013-01-01

Stream denitrification is thought to be enhanced by hyporheic transport but there is little direct evidence from the field. To demonstrate at a field site, we injected 15NO3−, Br (conservative tracer), and SF6 (gas exchange tracer) and compared measured whole-stream denitrification with in situ hyporheic denitrification in shallow and deeper flow paths of contrasting geomorphic units. Hyporheic denitrification accounted for between 1 and 200% of whole-stream denitrification. The reaction rate constant was positively related to hyporheic exchange rate (greater substrate delivery), concentrations of substrates DOC and nitrate, microbial denitrifier abundance (nirS), and measures of granular surface area and presence of anoxic microzones. The dimensionless product of the reaction rate constant and hyporheic residence time, λhzτhz define a Damköhler number, Daden-hz that was optimal in the subset of hyporheic flow paths where Daden-hz ≈ 1. Optimal conditions exclude inefficient deep pathways transport where substrates are used up and also exclude inefficient shallow pathways that require repeated hyporheic entries and exits to complete the reaction. The whole-stream reaction significance, Rs (dimensionless), was quantified by multiplying Daden-hz by the proportion of stream discharge passing through the hyporheic zone. Together these two dimensionless metrics, one flow-path scale and the other reach-scale, quantify the whole-stream significance of hyporheic denitrification. One consequence is that the effective zone of significant denitrification often differs from the full depth of the hyporheic zone, which is one reason why whole-stream denitrification rates have not previously been explained based on total hyporheic-zone metrics such as hyporheic-zone size or residence time.

Circular Data Images for Directional Data

NASA Technical Reports Server (NTRS)

Morpet, William J.

2004-01-01

Directional data includes vectors, points on a unit sphere, axis orientation, angular direction, and circular or periodic data. The theoretical statistics for circular data (random points on a unit circle) or spherical data (random points on a unit sphere) are a recent development. An overview of existing graphical methods for the display of directional data is given. Cross-over occurs when periodic data are measured on a scale for the measurement of linear variables. For example, if angle is represented by a linear color gradient changing uniformly from dark blue at -180 degrees to bright red at +180 degrees, the color image will be discontinuous at +180 degrees and -180 degrees, which are the same location. The resultant color would depend on the direction of approach to the cross-over point. A new graphical method for imaging directional data is described, which affords high resolution without color discontinuity from "cross-over". It is called the circular data image. The circular data image uses a circular color scale in which colors repeat periodically. Some examples of the circular data image include direction of earth winds on a global scale, rocket motor internal flow, earth global magnetic field direction, and rocket motor nozzle vector direction vs. time.

Probe-fed semi circular microstrip antenna vis-à-vis circular microstrip antenna: a necessary revisit

NASA Astrophysics Data System (ADS)

Ghosh, S. K.; Varshney, S. K.; Chakraborty, S.; Singh, L. L. K.; Chattopadhyay, S.

2018-03-01

Microstrip patch antenna of semicircular geometry has been investigated in view of miniaturization of conventional circular geometry. The precise operating frequency of the semicircular microstrip patch antenna is the most significant parameter to be determined in order to design such antenna system to achieve the optimum performance. In the present investigation an improved formulation is presented for accurate determination of the resonant frequency of semicircular patch. Also, the radiation property of such patch is thoroughly investigated. Through comparisons are documented amongst the circular and semicircular patches. It is revealed that, the semicircular patch offers more better radiation performance compared to circular.

2 CFR 215.26 - Non-Federal audits.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 2 Grants and Agreements 1 2010-01-01 2010-01-01 false Non-Federal audits. 215.26 Section 215.26 Grants and Agreements OFFICE OF MANAGEMENT AND BUDGET CIRCULARS AND GUIDANCE Reserved UNIFORM ADMINISTRATIVE REQUIREMENTS FOR GRANTS AND AGREEMENTS WITH INSTITUTIONS OF HIGHER EDUCATION, HOSPITALS, AND OTHER NON-PROFIT ORGANIZATIONS (OMB CIRCULAR A-11...

Circular motion of bodies of revolution

NASA Technical Reports Server (NTRS)

Kaplan, Carl

1936-01-01

The circular motion for airship-like bodies has thus far been calculated only for a prolate ellipsoid of revolution (reference 1, p.133 and reference 2). In this paper, however, the circular motion of elongated bodies of revolution more nearly resembling airships will be investigated. The results will give the effect of rotation on the pressure distribution and thus yield some information as to the stresses set up in an airship in circular flight.

Toward a transport-based analysis of nutrient spiraling and uptake in streams

USGS Publications Warehouse

Runkel, Robert L.

2007-01-01

Nutrient addition experiments are designed to study the cycling of nutrients in stream ecosystems where hydrologic and nonhydrologic processes determine nutrient fate. Because of the importance of hydrologic processes in stream ecosystems, a conceptual model known as nutrient spiraling is frequently employed. A central part of the nutrient spiraling approach is the determination of uptake length (SW), the average distance traveled by dissolved nutrients in the water column before uptake. Although the nutrient spiraling concept has been an invaluable tool in stream ecology, the current practice of estimating uptake length from steady-state nutrient data using linear regression (called here the "SW approach") presents a number of limitations. These limitations are identified by comparing the exponential SW equation with analytical solutions of a stream solute transport model. This comparison indicates that (1) SW, is an aggregate measure of uptake that does not distinguish between main channel and storage zone processes, (2) SW, is an integrated measure of numerous hydrologie and nonhydrologic processes-this process integration may lead to difficulties in interpretation when comparing estimates of SW, and (3) estimates of uptake velocity and areal uptake rate (Vf and U) based on S W, are not independent of system hydrology. Given these findings, a transport-based approach to nutrient spiraling is presented for steady-state and time-series data sets. The transport-based approach for time-series data sets is suggested for future research on nutrient uptake as it provides a number of benefits, including the ability to (1) separately quantify main channel and storage zone uptake, (2) quantify specific hydrologic and nonhydrologic processes using various model parameters (process separation), (3) estimate uptake velocities and areal uptake rates that are independent of hydrologic effects, and (4) use short-term, non-plateau nutrient additions such that the effects of

Quantifying tolerance indicator values for common stream fish species of the United States

USGS Publications Warehouse

Meador, M.R.; Carlisle, D.M.

2007-01-01

The classification of fish species tolerance to environmental disturbance is often used as a means to assess ecosystem conditions. Its use, however, may be problematic because the approach to tolerance classification is based on subjective judgment. We analyzed fish and physicochemical data from 773 stream sites collected as part of the U.S. Geological Survey's National Water-Quality Assessment Program to calculate tolerance indicator values for 10 physicochemical variables using weighted averaging. Tolerance indicator values (TIVs) for ammonia, chloride, dissolved oxygen, nitrite plus nitrate, pH, phosphorus, specific conductance, sulfate, suspended sediment, and water temperature were calculated for 105 common fish species of the United States. Tolerance indicator values for specific conductance and sulfate were correlated (rho = 0.87), and thus, fish species may be co-tolerant to these water-quality variables. We integrated TIVs for each species into an overall tolerance classification for comparisons with judgment-based tolerance classifications. Principal components analysis indicated that the distinction between tolerant and intolerant classifications was determined largely by tolerance to suspended sediment, specific conductance, chloride, and total phosphorus. Factors such as water temperature, dissolved oxygen, and pH may not be as important in distinguishing between tolerant and intolerant classifications, but may help to segregate species classified as moderate. Empirically derived tolerance classifications were 58.8% in agreement with judgment-derived tolerance classifications. Canonical discriminant analysis revealed that few TIVs, primarily chloride, could discriminate among judgment-derived tolerance classifications of tolerant, moderate, and intolerant. To our knowledge, this is the first empirically based understanding of fish species tolerance for stream fishes in the United States.

Increasing Base Cations in Streams: Another Legacy of Deicing Salts?

NASA Astrophysics Data System (ADS)

Helton, A. M.; Barclay, J. R.; Bellucci, C.; Rittenhouse, C.

2017-12-01

Elevated use of deicing salts directly increases sodium chloride inputs to watersheds. Sodium can accumulate in soils over time and has the potential to leach other cations (e.g., calcium, magnesium, and potassium) from the soil through cation exchange. We hypothesize that increased use of deicing salts results in a legacy of soils depleted in non-sodium base cations with loss of cations to receiving waters. The goal of this project is to quantify temporal trends in base cations and chloride in streams and rivers across the United States. We used Weighted Regressions on Time, Discharge, and Season (WRTDS) to analyze trends in base cations. Our preliminary analysis of 10 rivers in Connecticut with chemical periods of record ranging from 24 - 64 years (median = 55 years), shows that the flux of base cations is increasing in all sites (25 - 366 103 meq ha-1 yr-1 yr-1), driven largely by increases in sodium (23 - 222 103 meq ha-1 yr-1 yr-1), the dominant cation in 7 of the sites. Chloride is also increasing at all sites (26 - 261 103 meq ha-1 yr-1 yr-1), which, in combination with salt use trends, suggests a road salt source for the increased sodium. Non-sodium cations are also increasing in 9 of the sites (8 - 54 103 meq ha-1 yr-1 yr-1), though they are not directly added with most deicing salts. We will compare these trends to other long-term sites across the United States, and quantify relationships between cation trends and land cover, road density, and snowfall.

Fire severity in intermittent stream drainages, Western Cascade Range, Oregon.

Treesearch

Jennifer E. Tollefson; Frederick J. Swanson; John H. Cissel

2004-01-01

We quantified fire severity patterns within intermittent stream drainages in a recently burned area of the central western Cascades, Oregon. Aerial photographs were used to estimate post fire live canopy cover within streamside and upland zones on the southeast and southwest-facing slopes of 33 watersheds. Live canopy cover did not differ significantly between...

Nearly bound states in the radiation continuum in a circular array of dielectric rods

NASA Astrophysics Data System (ADS)

Bulgakov, Evgeny N.; Sadreev, Almas F.

2018-03-01

We consider E -polarized bound states in the radiation continuum (BICs) in circular periodical arrays of N infinitely long dielectric rods. We find that each true BIC which occurs in an infinite linear array has its counterpart in the circular array as a near-BIC with extremely large quality factor. We argue analytically as well as numerically that the quality factor of the symmetry-protected near-BICs diverges as eλ N, where λ is a material parameter dependent on the radius and the refraction index of the rods. By tuning of the radius of rods, we also find numerically non-symmetry-protected near-BICs. These near-BICs are localized with exponential accuracy outside the circular array, but fill the whole inner space of the array carrying orbital angular momentum.

A simple circular-polarized antenna: Circular waveguide horn coated with lossy magnetic material

NASA Technical Reports Server (NTRS)

Lee, C. S.; Lee, S. W.; Justice, D. W.

1986-01-01

A circular waveguide horn coated with a lossy material in its interior wall can be used as an alternative to a corrugated waveguide for radiating a circularly polarized (CP) field. To achieve good CP radiation, the diameter of the structure must be larger than the free-space wavelength, and the coating material must be sufficiently lossy and magnetic. This device is cheaper and lighter in weight than the corrugated one.

Broadband Circularly Polarized Slot Antenna Loaded by a Multiple-Circular-Sector Patch

PubMed Central

Trinh-Van, Son; Yang, Youngoo; Lee, Kang-Yoon

2018-01-01

In this paper, a microstrip-fed broadband circularly polarized (CP) slot antenna is presented. CP operation can be attained simply by embedding an S-shaped strip. By loading with a multiple-circular-sector patch, which consists of 12 circular-sector patches with identical central angles of 30° and different radii, the 3 dB axial ratio (AR) bandwidth is significantly broadened. To validate the performance of the proposed antenna, an antenna prototype is fabricated and tested. The fabricated antenna is 54 mm × 54 mm × 0.8 mm in size. The measured −10 dB reflection and 3 dB AR bandwidths are 81.06% (1.68–3.97 GHz) and 70.55% (1.89–3.95 GHz), respectively. Within the 3 dB AR bandwidth, the measured peak gain is 3.81 dBic. Reasonable agreement is also obtained between the measured and simulated results. PMID:29762530

Complications encountered with circular ring fixation in persons with diabetes mellitus.

PubMed

Wukich, Dane K; Belczyk, Ronald J; Burns, Patrick R; Frykberg, Robert G

2008-10-01

The purpose of this study was to identify and report the complications associated with the use of circular ring fixation in diabetic patients, and to compare the frequency of complications in patients without diabetes. We hypothesized that complications with circular ring fixation occurred more frequently in patients with diabetes than patients without diabetes. Institutional Review Board approval was obtained and patient charts were retrospectively reviewed from June 2004 and February 2007. Fifty six consecutive patients undergoing midfoot, hindfoot and/or ankle surgery were treated with circular ring fixation which included 33 diabetic patients in the study group and 23 non-diabetic patients in the control group. Patient demographics, the duration of treatment with the external fixator, and complications were recorded. Males had a greater number of complications compared to females (p = 0.0014). The total number of complications was statistically greater in diabetic patients (study group) versus non-diabetic patients (control group) (p = 0.003). In multivariate logistic regression, diabetes and male sex were the only significant variables associated with wire complications (OR 7.35, 95% CI 1.93-28.04 and OR 0.22, 95% CI 0.05-8584111, respectively). Women are protected from wire complications with a risk reduction of 78% compared to males. Diabetics have a 7-fold risk for any wire complication compared to patients without diabetes. We found no adverse effects of BMI, obesity, age, smoking, neuropathy, or Charcot neuroarthropathy on a satisfactory recovery.

Use of BasinTemp to model summer stream temperatures in the south fork of Ten Mile River, CA

Treesearch

Rafael Real de Asua; Ethan Bell; Bruce Orr; Peter Baker; Kevin Faucher

2012-01-01

We used BasinTemp to predict summer stream temperatures in South Fork Ten Mile River (SFTMR), Mendocino County. BasinTemp is a temperature model that attempts to quantify the basin-wide effects of high summer stream temperatures in basins where the data inputs are scarce. It assumes that direct solar radiation is the chief...

A boxplot for circular data.

PubMed

Buttarazzi, Davide; Pandolfo, Giuseppe; Porzio, Giovanni C

2018-05-21

The box-and-whiskers plot is an extraordinary graphical tool that provides a quick visual summary of an observed distribution. In spite of its many extensions, a really suitable boxplot to display circular data is not yet available. Thanks to its simplicity and strong visual impact, such a tool would be especially useful in all fields where circular measures arise: biometrics, astronomy, environmetrics, Earth sciences, to cite just a few. For this reason, in line with Tukey's original idea, a Tukey-like circular boxplot is introduced. Several simulated and real datasets arising in biology are used to illustrate the proposed graphical tool. © 2018, The International Biometric Society.

17 CFR 230.253 - Offering circular.

Code of Federal Regulations, 2011 CFR

2011-04-01

... permitted. (2) Where an offering circular is distributed through an electronic medium, issuers may satisfy... COMPLETENESS OF ANY OFFERING CIRCULAR OR OTHER SELLING LITERATURE. THESE SECURITIES ARE OFFERED PURSUANT TO AN...

17 CFR 230.253 - Offering circular.

Code of Federal Regulations, 2010 CFR

2010-04-01

... permitted. (2) Where an offering circular is distributed through an electronic medium, issuers may satisfy... COMPLETENESS OF ANY OFFERING CIRCULAR OR OTHER SELLING LITERATURE. THESE SECURITIES ARE OFFERED PURSUANT TO AN...

SU-E-I-02: Characterizing Low-Contrast Resolution for Non-Circular CBCT Trajectories

DOE Office of Scientific and Technical Information (OSTI.GOV)

Davis, A; Pan, X; Pelizzari, C

Purpose: The use of non-circular scanning trajectories with optimization-basedreconstruction algorithms can be used in conjunction with non-planaracquisition geometries for axial field-of-view (FOV) extension incone-beam CT (CBCT). To evaluate the utility of these trajectories,quantitative image quality metrics should be evaluated. Low-contrastresolution (LCR) and CT number accuracy are significant challenges forCBCT. With unprecedented axial coverage provided by thesetrajectories, measuring such metrics throughout the axial range iscritical. There are currently no phantoms designed to measurelow-contrast resolution over such an extended volume. Methods: The CATPHAN (The Phantom Laboratory, Salem NY) is the current standardfor image quality evaluation. While providing several useful modulesfor different evaluationmore » metrics, each module was designed to beevaluated in a single slice and not for comparison across axialpositions. To characterize the LCR and HU accuracy over an extendedaxial length, we have designed and built a phantom with evaluationmodules at multiple and adjustable axial positions. Results: The modules were made from a cast polyurethane resin. Holes rangingfrom 1/8 to 5/8 inch were added at a constant radius from the modulecenter into which rods of two different plastic materials were pressedto provide two nominal levels of contrast (1.0% and 0.5%). Largerholes were bored to accept various RMI plugs with known electrondensities for HU accuracy evaluation. The modules can be inserted intoan acrylic tube long enough to cover the entire axial FOV and theirpositions adjusted to desired evaluation points. Conclusion: This phantom allows us to measure the LCR and HU accuracy across theaxial coverage within a single acquisition. These metrics can be usedto characterize the impact different trajectories and reconstructionparameters have on clinically relevant image quality performancemetrics. Funding was provided in part by Varian Medical Systems and

Flux rope, hyperbolic flux tube, and late extreme ultraviolet phases in a non-eruptive circular-ribbon flare

NASA Astrophysics Data System (ADS)

Masson, Sophie; Pariat, Étienne; Valori, Gherardo; Deng, Na; Liu, Chang; Wang, Haimin; Reid, Hamish

2017-08-01

Context. The dynamics of ultraviolet (UV) emissions during solar flares provides constraints on the physical mechanisms involved in the trigger and the evolution of flares. In particular it provides some information on the location of the reconnection sites and the associated magnetic fluxes. In this respect, confined flares are far less understood than eruptive flares generating coronal mass ejections. Aims: We present a detailed study of a confined circular flare dynamics associated with three UV late phases in order to understand more precisely which topological elements are present and how they constrain the dynamics of the flare. Methods: We perform a non-linear force-free field extrapolation of the confined flare observed with the Helioseismic and Magnetic Imager (HMI) and Atmospheric Imaging Assembly (AIA) instruments on board Solar Dynamics Observatory (SDO). From the 3D magnetic field we compute the squashing factor and we analyse its distribution. Conjointly, we analyse the AIA extreme ultraviolet (EUV) light curves and images in order to identify the post-flare loops, and their temporal and thermal evolution. By combining the two analyses we are able to propose a detailed scenario that explains the dynamics of the flare. Results: Our topological analysis shows that in addition to a null-point topology with the fan separatrix, the spine lines and its surrounding quasi-separatix layer (QSL) halo (typical for a circular flare), a flux rope and its hyperbolic flux tube (HFT) are enclosed below the null. By comparing the magnetic field topology and the EUV post-flare loops we obtain an almost perfect match between the footpoints of the separatrices and the EUV 1600 Å ribbons and between the HFT field line footpoints and bright spots observed inside the circular ribbons. We show, for the first time in a confined flare, that magnetic reconnection occurred initially at the HFT below the flux rope. Reconnection at the null point between the flux rope and the

Circular motion geometry using minimal data.

PubMed

Jiang, Guang; Quan, Long; Tsui, Hung-Tat

2004-06-01

Circular motion or single axis motion is widely used in computer vision and graphics for 3D model acquisition. This paper describes a new and simple method for recovering the geometry of uncalibrated circular motion from a minimal set of only two points in four images. This problem has been previously solved using nonminimal data either by computing the fundamental matrix and trifocal tensor in three images or by fitting conics to tracked points in five or more images. It is first established that two sets of tracked points in different images under circular motion for two distinct space points are related by a homography. Then, we compute a plane homography from a minimal two points in four images. After that, we show that the unique pair of complex conjugate eigenvectors of this homography are the image of the circular points of the parallel planes of the circular motion. Subsequently, all other motion and structure parameters are computed from this homography in a straighforward manner. The experiments on real image sequences demonstrate the simplicity, accuracy, and robustness of the new method.

Detection and estimation of defects in a circular plate using operational deflection shapes

NASA Astrophysics Data System (ADS)

Pai, Perngjin F.; Oh, Yunje; Kim, Byeong-Seok

2002-06-01

This paper investigates dynamic characteristics (mode shapes and natural frequencies) and defect detection of circular plates using a scanning laser vibrometer. Exact dynamic characteristics of a circular aluminum plate having a clamped inner rim and a free outer rim are obtained using two methods; one uses Bessel functions and the other uses a multiple shooting method. An in-house finite element code GESA is also used to analyze the circular plate using the DKT plate element. Numerical results show that some reports in the literature are incorrect and that high-frequency Operational Deflection Shapes (ODSs) are needed in order to locate small defects. Detection of two defects in the circular aluminum plate is experimentally studied using the distributions of RMS velocities under broadband periodic chirp excitations. RMS velocities of ODSs, symmetry breaking of ODSs, splitting of natural frequencies and ODSs, and a Boundary Effect Detection (BED) method. The BED method is non-destructive and model-independent; it processes experimental ODSs to reveal extra local boundary effects caused by defects to reveal locations of defects. Experimental results show that small defects in circular plates can be pinpointed by these approaches. Moreover, a new concept of using the balance of elastic and kinetic energies within a mode cell for detecting defects in two- dimensional structures of irregular shapes is proposed.

Twitter and Non-Elites: Interpreting Power Dynamics in the Life Story of the (#)BRCA Twitter Stream

PubMed Central

Vicari, Stefania

2017-01-01

In May 2013 and March 2015, actress Angelina Jolie wrote in the New York Times about her choice to undergo preventive surgery. In her two op-eds, she explained that − as a carrier of the BRCA1 gene mutation − preventive surgery was the best way to lower her heightened risk of developing breast and ovarian cancer. By applying a digital methods approach to BRCA-related tweets from 2013 and 2015, before, during, and after the exposure of Jolie’s story, this study maps and interprets Twitter discursive dynamics at two time points of the BRCA Twitter stream. Findings show an evolution in curation and framing dynamics occurring between 2013 and 2015, with individual patient advocates replacing advocacy organizations as top curators of BRCA content and coming to prominence as providers of specialist illness narratives. These results suggest that between 2013 and 2015, Twitter went from functioning primarily as an organization-centered news reporting mechanism, to working as a crowdsourced specialist awareness system. This article advances a twofold contribution. First, it points at Twitter’s fluid functionality for an issue public and suggests that by looking at the life story—rather than at a single time point—of an issue-based Twitter stream, we can track the evolution of power roles underlying discursive practices and better interpret the emergence of non-elite actors in the public arena. Second, the study provides evidence of the rise of activist cultures that rely on fluid, non-elite, collective, and individual social media engagement. PMID:29278246

Quantifying the Impact of Nanoparticle Coatings and Non-uniformities on XPS Analysis: Gold/silver Core-shell Nanoparticles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Yung-Chen Andrew; Engelhard, Mark H.; Baer, Donald R.

2016-03-07

Abstract or short description: Spectral modeling of photoelectrons can serve as a valuable tool when combined with X-ray photoelectron spectroscopy (XPS) analysis. Herein, a new version of the NIST Simulation of Electron Spectra for Surface Analysis (SESSA 2.0) software, capable of directly simulating spherical multilayer NPs, was applied to model citrate stabilized Au/Ag-core/shell nanoparticles (NPs). The NPs were characterized using XPS and scanning transmission electron microscopy (STEM) to determine the composition and morphology of the NPs. The Au/Ag-core/shell NPs were observed to be polydispersed in size, non-circular, and contain off-centered Au-cores. Using the average NP dimensions determined from STEM analysis,more » SESSA spectral modeling indicated that washed Au/Ag-core shell NPs were stabilized with a 0.8 nm l« less

Long term trends of fish after liming of Swedish streams and lakes

NASA Astrophysics Data System (ADS)

Holmgren, Kerstin; Degerman, Erik; Petersson, Erik; Bergquist, Björn

2016-12-01

Thousands of Swedish acidified lakes and streams have been regularly limed for about 30 years. Standard sampling of fish assemblages in lakes and streams was an important part of monitoring the trends after liming, i.e. sampling with multi-mesh gillnets in lakes (EN 14757) and electrofishing in streams (EN 14011). Monitoring data are nationally managed, in the National Register of Survey test-fishing and the Swedish Electrofishing Register. We evaluated long-term data from 1029 electrofishing sites in limed streams and gillnet sampling in 750 limed lakes, along with reference data from 195 stream sites and 101 lakes with no upstream liming in their catchments. The median year of first liming was 1986 for both streams and lakes. The proportion of limed stream sites with no fish clearly decreased with time, mean species richness and proportion of sites with brown trout (Salmo trutta) recruits increased. There were no consistent trends in fish occurrence or species richness at non-limed sites, but occurrence of brown trout recruits also increased in acid as well as neutral reference streams. Abundance of brown trout, perch (Perca fluviatilis) and roach (Rutilus rutilus) increased significantly more at limed sites than at non-limed reference sites sampled before and after 1986. The mean species richness did not change consistently in limed lakes, but decreased in low alkalinity reference lakes, and fish abundance decreased significantly in limed as well as in non-limed lakes.

Characterisation and quantification of groundwater-surface water interactions along an alluvial stream using geophysical, hydraulic and tracer methods

NASA Astrophysics Data System (ADS)

Rumph Frederiksen, R.; Rasmussen, K. R.; Christensen, S.

2015-12-01

Qualifying and quantifying water, nutrient and contaminant exchange at the groundwater-surface water interface are becoming increasingly important for water resources management. The objectives of this study are to characterise an alluvial stream using geophysics in addition to traditional geological and geomorphological data and quantify the groundwater seepage to the stream on point-to-reach scale using both hydraulic and tracer methods. We mapped the very shallow subsurface along an alluvial stream using a GCM system (DUALEM421S, an electromagnetic system that can be operated behind a boat or towed behind a motorized vehicle) as well as using geological logs from a large number of old wells. Furthermore we made geomorphological observations through digital maps (old topographical maps and aerial photos) and field observations. We measured stream discharge (quasi-) simultaneously at several positions along the stream using both an Ott-C31 propeller instrument and an Acoustic Doppler Current Profiler instrument. The measurements were made during dry summer periods when baseflow is expected to be the dominating contribution to streamflow. Preliminary findings show that the GCM system reveals small-scale structures not seen with other data types. Furthermore, based on the GCM results and stream discharge results we have identified gaining, losing and zero exchange sections of the stream. During late summer 2015 we will collect additional hydrological data in order to support or modify our preliminary findings. To further investigate the spatial and temporal variations of the groundwater-surface water interactions along the stream we will measure groundwater seepage to the stream using: seepage meter (point-scale) DTS (reach-scale) temperature stick measurements (point-in-space-and-time-scale) temperature loggers installed in the streambed (month-scale) The measurement sites are chosen based on our geophysical, geological, and geomorphological mapping as well as our

Numerical investigation of flow-induced rotary oscillation of circular cylinder with rigid splitter plate

NASA Astrophysics Data System (ADS)

Lu, Lin; Guo, Xiao-ling; Tang, Guo-qiang; Liu, Ming-ming; Chen, Chuan-qi; Xie, Zhi-hua

2016-09-01

Numerical results of fluid flow over a rotationally oscillating circular cylinder with splitter plate are presented here. Different from the previous examinations with freely rotatable assembly, the fluid and structure interactions are treated as a coupled dynamic system by fully considering the structural inertia, stiffness, and damping. The hydrodynamic characteristics are examined in terms of reduced velocity Ur at a relatively low Reynolds number Re = 100 for different plate lengths of L/D = 0.5, 1.0, and 1.5, where Ur = U/(Dfn), Re = UD/υ and fn = (κ/J)0.5/2π with U the free stream velocity, D the diameter of the circular cylinder, υ the fluid kinematic viscosity, fn the natural frequency, J the inertial moment, κ the torsional stiffness, and L the plate length. Contrast to the freely rotating cylinder/plate body, that is, in the limit of κ → 0 or Ur →∞, remarkable rotary oscillation is observed at relatively low reduced velocities. For the typical case with L/D = 1.0, the maximum amplitude may reach five times that at the highest reduced velocity of Ur = 15.0 considered in this work. At the critical reduced velocity Ur = 4.2, notable hydrodynamic jumps are identified for the rotation amplitude, response frequency, mean drag coefficient, lift amplitude, and vortex shedding frequency. Moreover, the phase angle between the fluid moment and rotary oscillation abruptly changes from 0 to π at Ur = 6.5. Due to the combined effect of fluid moment, rotation response, and phase difference, the natural frequency of the rotating body varies in flow, leading to a wide regime of lock-in/synchronization (Ur ≥4.2, for L/D = 1.0). The phenomenon of rotation bifurcation, i.e., the equilibrium position of the rotary oscillation deflects to a position which is not parallel to the free stream, is found to only occur at higher reduced velocities. The longer splitter plate has the lower critical reduced velocity. The occurrence of bifurcation is attributed to the

Pressure losses and heat transfer in non-circular channels with hydraulically smooth walls

NASA Technical Reports Server (NTRS)

Malak, J.

1982-01-01

The influence of channel geometry on pressure losses and heat transfer in noncircular channels with hydraulically smooth walls was studied. As a basic assumption for the description of this influence, integral geometrical criteria, selected according to experimental experience, were introduced. Using these geometrical criteria, a large set of experimental data for pressure losses and heat transfer in circular and annular channels with longitudinal fins was evaluated. In this way it as empirically proved that the criteria described channel geometry fairly well.

Stream Management: A Rebirth

ERIC Educational Resources Information Center

Coler, Robert A.; Zatryka, Simon A.

1974-01-01

This article describes a stream management course designed to give non-science majors an in-depth study of water quality. The course includes work in determining and measuring water quality parameters and the discussion of management techniques. Construction of a Hewitt Ramp and wing deflectors are illustrated in the article. (MA)

Erlang circular model motivated by inverse stereographic projection

NASA Astrophysics Data System (ADS)

Pramesti, G.

2018-05-01

The Erlang distribution is a special case of the Gamma distribution with the shape parameter is an integer. This paper proposed a new circular model used inverse stereographic projection. The inverse stereographic projection which is a mapping that projects a random variable from a real line onto a circle can be used in circular statistics to construct a distribution on the circle from real domain. From the circular model, then can be derived the characteristics of the Erlang circular model such as the mean resultant length, mean direction, circular variance and trigonometric moments of the distribution.

Exploring landscapes and ecosystems by studying their streams

NASA Astrophysics Data System (ADS)

Kirchner, J. W.

2016-12-01

Streams integrate fluxes of water, solutes, and sediment from their catchments, and thus they act as mirrors of the surrounding landscape. Patterns of streamflow, chemistry, and sediment flux can therefore shed light on physical, chemical, and biological processes at the scale of whole ecosystems. However, landscapes also exhibit preferential flow and pervasive heterogeneity on all scales, and therefore store waters over a wide spectrum of time scales, complicating efforts to interpret hydrological and geochemical signals in streamwaters. Here I review current and recent research exploring how landscapes store, mix, and release water and solutes to streams. Groundwater levels and stream flows exhibit diurnal cycles in response to snowmelt in springtime and transpiration during the growing season. These cycles vividly illustrate how aquifers and streams mirror ecological processes in their surrounding landscapes. Stream networks extend and retract, both seasonally and in response to individual rainfall events, dynamically mapping out variations in subsurface transmissivity and in the balance between precipitation and transpiration. Water quality time series spanning the periodic table, from H+ to U, exhibit universal fractal scaling on time scales from hours to decades. This scaling behavior is a temporal expression of the spatial heterogeneity that pervades the subsurface, and it confounds efforts to identify water quality trends. Isotope tracers such as 18O, 2H, 3H, and 14C can used to quantify water ages over seven orders of magnitude, from hours to thousands of years. These tracers show that substantial fractions of streamflow are hours, days, and months old, even in streams fed by aquifers with significant proportions of pre-Holocene groundwater. Examples such as these will be presented to illustrate the close coupling between landscapes and the waters that drain them, and to demonstrate how streams can be used as windows into landscape processes.

Dynamic perturbation effects upon the circular dichroism intensity induced in an aggregate of dye chromophores bound to biopolymers

NASA Astrophysics Data System (ADS)

Kamiya, Mamoru

1980-11-01

The dynamic perturbation effects of polarizable monomer perturbers upon the circular dichroism intensity arising from absorption transitions of an arbitrary aggregate of dye chromophores bound to a large host polymer are formulated using the linear response theory in the decorrelation approximation, where the interchromophoric retardation phase factors are eliminated by a first-order Taylor expansion which is compatible with the use of the retarded helix selection rules in the long-wavelength approximation. A space-averaged and closed-form formulation of the non-conservative circular dichroism intensity which is perturbed by intensity with the outside perturber transitions is derived in the limit of the weak dynamic perturbation where perturber—perturber interactions are negligible. The relevant formulation is applied in order to investigate the intercalation model dependence of the non-conservative circular dichroism intensity induced at the visible absorption band of proflavine molecules intercalated in either poly(A—T) or poly(G—C).

Stabilization of RNA hairpins using non-nucleotide linkers and circularization.

PubMed

Kiliszek, Agnieszka; Blaszczyk, Leszek; Kierzek, Ryszard; Rypniewski, Wojciech

2017-06-02

An RNA hairpin is an essential structural element of RNA. Hairpins play crucial roles in gene expression and intermolecular recognition but are also involved in the pathogenesis of some congenital diseases. Structural studies of the hairpin motifs are impeded by their thermodynamic instability, as they tend to unfold to form duplexes, especially at high concentrations required for crystallography or nuclear magnetic resonance spectroscopy. We have elaborated techniques to stabilize the RNA hairpins by linking the free ends of the RNA strand at the base of the hairpin stem. One method involves stilbene diether or hexaethylene glycol linkers and circularization by T4 RNA ligase. Another method uses click chemistry to stitch the RNA ends with a triazole linker. Both techniques are efficient and easy to perform. They should be useful in making stable, biologically relevant RNA constructs for structural studies. © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research.

STREAM CORRIDOR RESTORATION AND ITS POTENTIAL TO IMPROVE WATER QUALITY

EPA Science Inventory

Watershed stream corridors are being degraded by anthropogenic impacts of increased flow from runoff, sediment loading from erosion and contaminants such as nitrate from non-point sources. One solution is to restore stream corridors with bank stabilization and energy dissipation ...

Quantifying the effectiveness of conservation measures to control the spread of anthropogenic hybridization in stream salmonids: a climate adaptation case study

USGS Publications Warehouse

Al-Chokhachy, Robert K.; Muhlfeld, Clint C.; Boyer, Matthew; Jones, Leslie A.; Steed, Amber; Kershner, Jeffrey L.

2014-01-01

Quantifying the effectiveness of management actions to mitigate the effects of changing climatic conditions (i.e., climate adaptation) can be difficult, yet critical for conservation. We used population genetic data from 1984 to 2011 to assess the degree to which ambient climatic conditions and targeted suppression of sources of nonnative Rainbow Trout Oncorhynchus mykiss have influenced the spread of introgressive hybridization in native populations of Westslope Cutthroat Trout O. clarkii lewisi. We found rapid expansion in the spatial distribution and proportion of nonnative genetic admixture in hybridized populations from 1984 to 2004, but minimal change since 2004. The spread of hybridization was negatively correlated with the number of streamflow events in May that exceeded the 75th percentile of historic flows (r = −0.98) and positively correlated with August stream temperatures (r = 0.89). Concomitantly, suppression data showed a 60% decline in catch per unit effort for fish with a high proportion of Rainbow Trout admixture, rendering some uncertainty as to the relative strength of factors controlling the spread of hybridization. Our results illustrate the importance of initiating management actions to mitigate the potential effects of climate change, even where data describing the effectiveness of such actions are initially limited but the risks are severe.

Non-Additive Increases in Sediment Stability Are Generated by Macroinvertebrate Species Interactions in Laboratory Streams

PubMed Central

Albertson, Lindsey K.; Cardinale, Bradley J.; Sklar, Leonard S.

2014-01-01

Previous studies have shown that biological structures such as plant roots can have large impacts on landscape morphodynamics, and that physical models that do not incorporate biology can generate qualitatively incorrect predictions of sediment transport. However, work to date has focused almost entirely on the impacts of single, usually dominant, species. Here we ask whether multiple, coexisting species of hydropsychid caddisfly larvae have different impacts on sediment mobility compared to single-species systems due to competitive interactions and niche differences. We manipulated the presence of two common species of net-spinning caddisfly (Ceratopsyche oslari, Arctopsyche californica) in laboratory mesocosms and measured how their silk filtration nets influence the critical shear stress required to initiate sediment grain motion when they were in monoculture versus polyculture. We found that critical shear stress increases non-additively in polycultures where species were allowed to interact. Critical shear stress was 26% higher in multi-species assemblages compared to the average single-species monoculture, and 21% greater than levels of stability achieved by the species having the largest impact on sediment motion in monoculture. Supplementary behavioral experiments suggest the non-additive increase in critical shear stress may have occurred as competition among species led to shifts in the spatial distribution of the two populations and complementary habitat use. To explore the implications of these results for field conditions, we used results from the laboratory study to parameterize a common model of sediment transport. We then used this model to estimate potential bed movement in a natural stream for which we had measurements of channel geometry, grain size, and daily discharge. Although this extrapolation is speculative, it illustrates that multi-species impacts could be sufficiently large to reduce bedload sediment flux over annual time scales in

Circular codes revisited: a statistical approach.

PubMed

Gonzalez, D L; Giannerini, S; Rosa, R

2011-04-21

In 1996 Arquès and Michel [1996. A complementary circular code in the protein coding genes. J. Theor. Biol. 182, 45-58] discovered the existence of a common circular code in eukaryote and prokaryote genomes. Since then, circular code theory has provoked great interest and underwent a rapid development. In this paper we discuss some theoretical issues related to the synchronization properties of coding sequences and circular codes with particular emphasis on the problem of retrieval and maintenance of the reading frame. Motivated by the theoretical discussion, we adopt a rigorous statistical approach in order to try to answer different questions. First, we investigate the covering capability of the whole class of 216 self-complementary, C(3) maximal codes with respect to a large set of coding sequences. The results indicate that, on average, the code proposed by Arquès and Michel has the best covering capability but, still, there exists a great variability among sequences. Second, we focus on such code and explore the role played by the proportion of the bases by means of a hierarchy of permutation tests. The results show the existence of a sort of optimization mechanism such that coding sequences are tailored as to maximize or minimize the coverage of circular codes on specific reading frames. Such optimization clearly relates the function of circular codes with reading frame synchronization. Copyright © 2011 Elsevier Ltd. All rights reserved.

Circularly polarized Raman study on diamond structure crystals

NASA Astrophysics Data System (ADS)

Lee, Je-Ho; Kim, Sera; Seong, Maeng-Je

2018-01-01

Circularly polarized Raman and/or photoluminescence (PL) analyses have recently been very important in studying physical properties of many layered materials that were either mechanically exfoliated or grown by chemical-vapor-deposition (CVD) on silicon substrates. Since silicon Raman signal is always accompanied by the circularly polarized Raman and/or PL signal from the layered materials, observation of proper circularly polarized Raman selection rules on silicon substrates would be extremely good indicator that the circularly polarized Raman and/or PL measurements on the layered materials were done properly. We have performed circularly polarized Raman measurements on silicon substrates and compared the results with the Raman intensities calculated by using Raman tensors of the diamond crystal structure. Our experimental results were in excellent agreement with the calculation. Similar circularly polarized Raman analysis done on germanium substrate also showed good agreement.

The cluster galaxy circular velocity function

NASA Astrophysics Data System (ADS)

Desai, V.; Dalcanton, J. J.; Mayer, L.; Reed, D.; Quinn, T.; Governato, F.

2004-06-01

We present galaxy circular velocity functions (GCVFs) for 34 low-redshift (z<~ 0.15) clusters identified in the Sloan Digital Sky Survey (SDSS), for 15 clusters drawn from dark matter simulations of hierarchical structure growth in a ΛCDM cosmology, and for ~22 000 SDSS field galaxies. We find that the simulations successfully reproduce the shape, amplitude and scatter in the observed distribution of cluster galaxy circular velocities. The power-law slope of the observed cluster GCVF is ~-2.4, independent of cluster velocity dispersion. The average slope of the simulated GCVFs is somewhat steeper, although formally consistent given the errors. We find that the effects of baryons on galaxy rotation curves is to flatten the simulated cluster GCVF into better agreement with observations. The cumulative GCVFs of the simulated clusters are very similar across a wide range of cluster masses, provided individual subhalo circular velocities are scaled by the circular velocities of the parent cluster. The scatter is consistent with that measured in the cumulative, scaled observed cluster GCVF. Finally, the observed field GCVF deviates significantly from a power law, being flatter than the cluster GCVF at circular velocities less than 200 km s-1.

Circular RNAs: diversity of form and function

PubMed Central

Lasda, Erika

2014-01-01

It is now clear that there is a diversity of circular RNAs in biological systems. Circular RNAs can be produced by the direct ligation of 5′ and 3′ ends of linear RNAs, as intermediates in RNA processing reactions, or by “backsplicing,” wherein a downstream 5′ splice site (splice donor) is joined to an upstream 3′ splice site (splice acceptor). Circular RNAs have unique properties including the potential for rolling circle amplification of RNA, the ability to rearrange the order of genomic information, protection from exonucleases, and constraints on RNA folding. Circular RNAs can function as templates for viroid and viral replication, as intermediates in RNA processing reactions, as regulators of transcription in cis, as snoRNAs, and as miRNA sponges. Herein, we review the breadth of circular RNAs, their biogenesis and metabolism, and their known and anticipated functions. PMID:25404635

Experimental Investigation of Shock-Cell Noise Reduction for Single Stream Nozzles in Simulated Flight

NASA Technical Reports Server (NTRS)

Yamamoto, K.; Brausch, J. F.; Balsa, T. F.; Janardan, B. A.; Knott, P. R.

1984-01-01

Seven single stream model nozzles were tested in the Anechoic Free-Jet Acoustic Test Facility to evaluate the effectiveness of convergent divergent (C-D) flowpaths in the reduction of shock-cell noise under both static and mulated flight conditions. The test nozzles included a baseline convergent circular nozzle, a C-D circular nozzle, a convergent annular plug nozzle, a C-D annular plug nozzle, a convergent multi-element suppressor plug nozzle, and a C-D multi-element suppressor plug nozzle. Diagnostic flow visualization with a shadowgraph and aerodynamic plume measurements with a laser velocimeter were performed with the test nozzles. A theory of shock-cell noise for annular plug nozzles with shock-cells in the vicinity of the plug was developed. The benefit of these C-D nozzles was observed over a broad range of pressure ratiosin the vicinity of their design conditions. At the C-D design condition, the C-D annual nozzle was found to be free of shock-cells on the plug.

Captured streams and springs in combined sewers: a review of the evidence, consequences and opportunities.

PubMed

Broadhead, A T; Horn, R; Lerner, D N

2013-09-01

Captured streams and springs may be flowing in combined sewers, increasing clean baseflow in pipes and wastewater treatment works (WwTWs), reducing pipe capacity and increasing treatment costs. The UK water industry is aware of this in principle, but there has been no explicit discussion of this in the published literature, nor have there been any known attempts to manage it. Instead, the current focus is on the similar intrusion of groundwater infiltration through pipe cracks and joints. We have conducted a thorough review of literature and international case studies to investigate stream and spring capture, finding several examples with convincing evidence that this occurs. We identify three modes of entry: capture by conversion, capture by interception, and direct spring capture. Methods to identify and quantify capture are limited, but the experience in Zurich suggests that it contributed 7-16% of the baseflow reaching WwTWs. There are negative impacts for the water industry in capital and operational expenditure, as well as environmental and social impacts of loss of urban streams. For a typical WwTW (Esholt, Bradford) with 16% of baseflow from captured streams and springs, we conservatively estimate annual costs of £ 2 million to £ 7 million. A detailed case study from Zurich is considered that has successfully separated captured baseflow into daylighted streams through the urban area, with multiple economic, environmental and social benefits. We conclude that there is a strong case for the UK water industry to consider captured streams and springs, quantify them, and assess the merits of managing them. Copyright © 2013 Elsevier Ltd. All rights reserved.

Streaming current magnetic fields in a charged nanopore.

PubMed

Mansouri, Abraham; Taheri, Peyman; Kostiuk, Larry W

2016-11-11

Magnetic fields induced by currents created in pressure driven flows inside a solid-state charged nanopore were modeled by numerically solving a system of steady state continuum partial differential equations, i.e., Poisson, Nernst-Planck, Ampere and Navier-Stokes equations (PNPANS). This analysis was based on non-dimensional transport governing equations that were scaled using Debye length as the characteristic length scale, and applied to a finite length cylindrical nano-channel. The comparison of numerical and analytical studies shows an excellent agreement and verified the magnetic fields density both inside and outside the nanopore. The radially non-uniform currents resulted in highly non-uniform magnetic fields within the nanopore that decay as 1/r outside the nanopore. It is worth noting that for either streaming currents or streaming potential cases, the maximum magnetic field occurred inside the pore in the vicinity of nanopore wall, as opposed to a cylindrical conductor that carries a steady electric current where the maximum magnetic fields occur at the perimeter of conductor. Based on these results, it is suggested and envisaged that non-invasive external magnetic fields readouts generated by streaming/ionic currents may be viewed as secondary electronic signatures of biomolecules to complement and enhance current DNA nanopore sequencing techniques.

Streaming current magnetic fields in a charged nanopore

NASA Astrophysics Data System (ADS)

Mansouri, Abraham; Taheri, Peyman; Kostiuk, Larry W.

2016-11-01

Magnetic fields induced by currents created in pressure driven flows inside a solid-state charged nanopore were modeled by numerically solving a system of steady state continuum partial differential equations, i.e., Poisson, Nernst-Planck, Ampere and Navier-Stokes equations (PNPANS). This analysis was based on non-dimensional transport governing equations that were scaled using Debye length as the characteristic length scale, and applied to a finite length cylindrical nano-channel. The comparison of numerical and analytical studies shows an excellent agreement and verified the magnetic fields density both inside and outside the nanopore. The radially non-uniform currents resulted in highly non-uniform magnetic fields within the nanopore that decay as 1/r outside the nanopore. It is worth noting that for either streaming currents or streaming potential cases, the maximum magnetic field occurred inside the pore in the vicinity of nanopore wall, as opposed to a cylindrical conductor that carries a steady electric current where the maximum magnetic fields occur at the perimeter of conductor. Based on these results, it is suggested and envisaged that non-invasive external magnetic fields readouts generated by streaming/ionic currents may be viewed as secondary electronic signatures of biomolecules to complement and enhance current DNA nanopore sequencing techniques.

Streaming current magnetic fields in a charged nanopore

PubMed Central

Mansouri, Abraham; Taheri, Peyman; Kostiuk, Larry W.

2016-01-01

Magnetic fields induced by currents created in pressure driven flows inside a solid-state charged nanopore were modeled by numerically solving a system of steady state continuum partial differential equations, i.e., Poisson, Nernst-Planck, Ampere and Navier-Stokes equations (PNPANS). This analysis was based on non-dimensional transport governing equations that were scaled using Debye length as the characteristic length scale, and applied to a finite length cylindrical nano-channel. The comparison of numerical and analytical studies shows an excellent agreement and verified the magnetic fields density both inside and outside the nanopore. The radially non-uniform currents resulted in highly non-uniform magnetic fields within the nanopore that decay as 1/r outside the nanopore. It is worth noting that for either streaming currents or streaming potential cases, the maximum magnetic field occurred inside the pore in the vicinity of nanopore wall, as opposed to a cylindrical conductor that carries a steady electric current where the maximum magnetic fields occur at the perimeter of conductor. Based on these results, it is suggested and envisaged that non-invasive external magnetic fields readouts generated by streaming/ionic currents may be viewed as secondary electronic signatures of biomolecules to complement and enhance current DNA nanopore sequencing techniques. PMID:27833119

Localization of CO2 Leakage from a Circular Hole on a Flat-Surface Structure Using a Circular Acoustic Emission Sensor Array

PubMed Central

Cui, Xiwang; Yan, Yong; Guo, Miao; Han, Xiaojuan; Hu, Yonghui

2016-01-01

Leak localization is essential for the safety and maintenance of storage vessels. This study proposes a novel circular acoustic emission sensor array to realize the continuous CO2 leak localization from a circular hole on the surface of a large storage vessel in a carbon capture and storage system. Advantages of the proposed array are analyzed and compared with the common sparse arrays. Experiments were carried out on a laboratory-scale stainless steel plate and leak signals were obtained from a circular hole in the center of this flat-surface structure. In order to reduce the influence of the ambient noise and dispersion of the acoustic wave on the localization accuracy, ensemble empirical mode decomposition is deployed to extract the useful leak signal. The time differences between the signals from the adjacent sensors in the array are calculated through correlation signal processing before estimating the corresponding distance differences between the sensors. A hyperbolic positioning algorithm is used to identify the location of the circular leak hole. Results show that the circular sensor array has very good directivity toward the circular leak hole. Furthermore, an optimized method is proposed by changing the position of the circular sensor array on the flat-surface structure or adding another circular sensor array to identify the direction of the circular leak hole. Experiential results obtained on a 100 cm × 100 cm stainless steel plate demonstrate that the full-scale error in the leak localization is within 0.6%. PMID:27869765

Colloidal InP/ZnS core shell nanocrystals studied by linearly and circularly polarized photoluminescence

NASA Astrophysics Data System (ADS)

Langof, L.; Fradkin, L.; Ehrenfreund, E.; Lifshitz, E.; Micic, O. I.; Nozik, A. J.

2004-02-01

The magneto-optical properties of InP/ZnS core-shell nanocrystals (NCs) were investigated by measuring the degree of linear and circular polarization of photoluminescence (PL) spectra, in the presence of an external magnetic field under resonant or non-resonant excitation. The linearly polarized PL data strongly indicate that InP/ZnS NCs have a prolongated shape. The resonant-excited circularly polarized PL decay curves indicate that the spin relaxation time of the studied samples is shorter than the radiative lifetime of their exciton. Furthermore, the magnetic field-induced circularly polarized PL process reveals an exciton g factor ( gex) of 0.55. Thus, such studies may serve as a tool to directly estimate the NC's shape anisotropy and to determine the g-factor of charge carriers and excitons in those NCs.

Non-streaming high-efficiency perforated semiconductor neutron detectors, methods of making same and measuring wand and detector modules utilizing same

DOEpatents

McGregor, Douglas S.; Shultis, John K.; Rice, Blake B.; McNeil, Walter J.; Solomon, Clell J.; Patterson, Eric L.; Bellinger, Steven L.

2010-12-21

Non-streaming high-efficiency perforated semiconductor neutron detectors, method of making same and measuring wands and detector modules utilizing same are disclosed. The detectors have improved mechanical structure, flattened angular detector responses, and reduced leakage current. A plurality of such detectors can be assembled into imaging arrays, and can be used for neutron radiography, remote neutron sensing, cold neutron imaging, SNM monitoring, and various other applications.

Density-dependent effects of non-native brown trout Salmo trutta on the species-area relationship in stream fish assemblages.

PubMed

Hasegawa, K; Mori, T; Yamazaki, C

2017-01-01

The spatial scale and density-dependent effects of non-native brown trout Salmo trutta on species richness of fish assemblages were examined at 48 study sites in Mamachi Stream, a tributary of Chitose River, Hokkaido, Japan. The density of age ≥1 year S. trutta was high in the upstream side of the main stem of Mamachi Stream. Fish species richness increased with increasing area of study sites (habitat size), but the increasing magnitude of the species richness with area decreased with increasing age of ≥1 year S. trutta density. The relationships between age ≥1 year S. trutta, however, and presence-absence of each species seemed to be different among species. Species richness was also determined by location and physical environmental variables, i.e. it was high on the downstream side and in structurally complex environments. © 2016 The Fisheries Society of the British Isles.

The GALAH survey: stellar streams and how stellar velocity distributions vary with Galactic longitude, hemisphere, and metallicity

NASA Astrophysics Data System (ADS)

Quillen, Alice C.; De Silva, Gayandhi; Sharma, Sanjib; Hayden, Michael; Freeman, Ken; Bland-Hawthorn, Joss; Žerjal, Maruša; Asplund, Martin; Buder, Sven; D'Orazi, Valentina; Duong, Ly; Kos, Janez; Lin, Jane; Lind, Karin; Martell, Sarah; Schlesinger, Katharine; Simpson, Jeffrey D.; Zucker, Daniel B.; Zwitter, Tomaz; Anguiano, Borja; Carollo, Daniela; Casagrande, Luca; Cotar, Klemen; Cottrell, Peter L.; Ireland, Michael; Kafle, Prajwal R.; Horner, Jonathan; Lewis, Geraint F.; Nataf, David M.; Ting, Yuan-Sen; Watson, Fred; Wittenmyer, Rob; Wyse, Rosemary

2018-07-01

Using GALAH (GALactic Archaeology with HERMES) survey data of nearby stars, we look at how structure in the planar (u, v) velocity distribution depends on metallicity and on viewing direction within the Galaxy. In nearby stars with distance d ≲ 1 kpc, the Hercules stream is most strongly seen in higher metallicity stars [Fe/H] > 0.2. The Hercules stream peak v value depends on viewed galactic longitude, which we interpret as due to the gap between the stellar stream and more circular orbits being associated with a specific angular momentum value of about 1640 km s-1 kpc. The association of the gap with a particular angular momentum value supports a bar resonant model for the Hercules stream. Moving groups previously identified in Hipparcos(HIgh Precision Parallax COllecting Satellite) observations are easiest to see in stars nearer than 250 pc, and their visibility and peak velocities in the velocity distributions depends on both viewing direction (galactic longitude and hemisphere) and metallicity. We infer that there is fine structure in local velocity distributions that varies over distances of a few hundred pc in the Galaxy.

Mapping Spatial Distributions of Stream Power and Channel Change along a Gravel-Bed River in Northern Yellowstone

NASA Astrophysics Data System (ADS)

Lea, D. M.; Legleiter, C. J.

2014-12-01

Stream power represents the rate of energy expenditure along a river and can be calculated using topographic data acquired via remote sensing. This study used remotely sensed data and field measurements to quantitatively relate temporal changes in the form of Soda Butte Creek, a gravel-bed river in northeastern Yellowstone National Park, to stream power gradients along an 8 km reach. Aerial photographs from 1994-2012 and cross-section surveys were used to assess lateral channel mobility and develop a morphologic sediment budget for quantifying net sediment flux for a series of budget cells. A drainage area-to-discharge relationship and digital elevation model (DEM) developed from LiDAR data were used to obtain the discharge and slope values, respectively, needed to calculate stream power. Local and lagged relationships between mean stream power gradient at median peak discharge and volumes of erosion, deposition, and net sediment flux were quantified via spatial cross-correlation analyses. Similarly, autocorrelations of locational probabilities and sediment fluxes were used to examine spatial patterns of channel mobility and sediment transfer. Energy expended above critical stream power was calculated for each time period to relate the magnitude and duration of peak flows to the total volume of sediment eroded or deposited during each time increment. Our results indicated a lack of strong correlation between stream power gradients and sediment flux, which we attributed to the geomorphic complexity of the Soda Butte Creek watershed and the inability of our relatively simple statistical approach to link sediment dynamics expressed at a sub-budget cell scale to larger-scale driving forces such as stream power gradients. Future studies should compare the moderate spatial resolution techniques used in this study to very-high resolution data acquired from new fluvial remote sensing technologies to better understand the amount of error associated with stream power

Suggested Courseware for the Non-Calculus Physics Student: Projectile Motion, Circular Motion, Rotational Dynamics, and Statics.

ERIC Educational Resources Information Center

Mahoney, Joyce; And Others

1988-01-01

Evaluates 10 courseware packages covering topics for introductory physics. Discusses the price; sub-topics; program type; interaction; possible hardware; time; calculus required; graphics; and comments on each program. Recommends two packages in projectile and circular motion, and three packages in statics and rotational dynamics. (YP)

Quantifying cardiometabolic risk using modifiable non-self-reported risk factors.

PubMed

Marino, Miguel; Li, Yi; Pencina, Michael J; D'Agostino, Ralph B; Berkman, Lisa F; Buxton, Orfeu M

2014-08-01

Sensitive general cardiometabolic risk assessment tools of modifiable risk factors would be helpful and practical in a range of primary prevention interventions or for preventive health maintenance. To develop and validate a cumulative general cardiometabolic risk score that focuses on non-self-reported modifiable risk factors such as glycosylated hemoglobin (HbA1c) and BMI so as to be sensitive to small changes across a span of major modifiable risk factors, which may not individually cross clinical cut-off points for risk categories. We prospectively followed 2,359 cardiovascular disease (CVD)-free subjects from the Framingham offspring cohort over a 14-year follow-up. Baseline (fifth offspring examination cycle) included HbA1c and cholesterol measurements. Gender-specific Cox proportional hazards models were considered to evaluate the effects of non-self-reported modifiable risk factors (blood pressure, total cholesterol, high-density lipoprotein cholesterol, smoking, BMI, and HbA1c) on general CVD risk. We constructed 10-year general cardiometabolic risk score functions and evaluated its predictive performance in 2012-2013. HbA1c was significantly related to general CVD risk. The proposed cardiometabolic general CVD risk model showed good predictive performance as determined by cross-validated discrimination (male C-index=0.703, 95% CI=0.668, 0.734; female C-index=0.762, 95% CI=0.726, 0.801) and calibration (lack-of-fit chi-square=9.05 [p=0.338] and 12.54 [p=0.128] for men and women, respectively). This study presents a risk factor algorithm that provides a convenient and informative way to quantify cardiometabolic risk on the basis of modifiable risk factors that can motivate an individual's commitment to prevention and intervention. Copyright © 2014 American Journal of Preventive Medicine. Published by Elsevier Inc. All rights reserved.

77 FR 32552 - Circular Welded Carbon-Quality Steel Pipe From the Socialist Republic of Vietnam: Preliminary...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-06-01

... obtain separate-rate status in non-market economy (NME) investigations such as this investigation.\\3\\ \\2... Welded Non-Alloy Steel Pipe from Brazil, Mexico, the Republic of Korea, and Taiwan; and Certain Circular... Steel Pipe from the People's Republic of China, 73 FR 31970 (June 5, 2008), and accompanying Issues and...

Circular RNAs: diversity of form and function.

PubMed

Lasda, Erika; Parker, Roy

2014-12-01

It is now clear that there is a diversity of circular RNAs in biological systems. Circular RNAs can be produced by the direct ligation of 5' and 3' ends of linear RNAs, as intermediates in RNA processing reactions, or by "backsplicing," wherein a downstream 5' splice site (splice donor) is joined to an upstream 3' splice site (splice acceptor). Circular RNAs have unique properties including the potential for rolling circle amplification of RNA, the ability to rearrange the order of genomic information, protection from exonucleases, and constraints on RNA folding. Circular RNAs can function as templates for viroid and viral replication, as intermediates in RNA processing reactions, as regulators of transcription in cis, as snoRNAs, and as miRNA sponges. Herein, we review the breadth of circular RNAs, their biogenesis and metabolism, and their known and anticipated functions. © 2014 Lasda and Parker; Published by Cold Spring Harbor Laboratory Press for the RNA Society.

Biological and physical conditions of macroinvertebrates in reference lowland streams

NASA Astrophysics Data System (ADS)

de Brouwer, Jan; Eekhout, Joris; Verdonschot, Piet

2016-04-01

Channelisation measures taken halfway the 20th century have had destructive consequences for the diversity of the ecology in the majority of the lowland streams in countries such as the Netherlands. Currently, stream restoration measures are being implemented in these degraded lowland streams, where design principles are often based on outdated relationships between biological and physical conditions. Little is known about the reference conditions in these streams. Therefore, the aim of this research is to quantify the relationships between biological and physical conditions of macroinvertebrates in reference lowland streams. The research was conducted in four near-natural lowland streams in Central Poland. Field data were obtained during a field campaign in 2011. The following data were obtained in a 50-m reach in each of the four streams: macroinvertebrate sampling, spatial habitat patterns, bathymetry, and flow-velocity. Furthermore, water level, light sensitivity and temperature sensors were installed to obtain the temporal dynamic of these streams. Macroinvertebrates were sampled in 9 different habitat types, i.e. sand, gravel, fine organic matter, stones, branches, leaves, silt, vegetation, and wood. Macroinvertebrates were determined to the highest taxonomic level possible. Data from the bathymetrical surveys were interpolated on a grid and bathymetrical metrics were determined. Flow velocity measurements were related to habitats and flow velocity metrics were determined. Analysis of the data shows that flow conditions vary among the different habitat, with a gradient from hard substrates towards soft substrates. Furthermore, the data show that stream as a unit best explains species composition, but also specific habitat conditions, such as substrate type and flow velocity, correlate with species composition. More specific, the data shows a strong effect of wood on species composition. These findings may have implications for stream restoration design, which

Self-complementary circular codes in coding theory.

PubMed

Fimmel, Elena; Michel, Christian J; Starman, Martin; Strüngmann, Lutz

2018-04-01

Self-complementary circular codes are involved in pairing genetic processes. A maximal [Formula: see text] self-complementary circular code X of trinucleotides was identified in genes of bacteria, archaea, eukaryotes, plasmids and viruses (Michel in Life 7(20):1-16 2017, J Theor Biol 380:156-177, 2015; Arquès and Michel in J Theor Biol 182:45-58 1996). In this paper, self-complementary circular codes are investigated using the graph theory approach recently formulated in Fimmel et al. (Philos Trans R Soc A 374:20150058, 2016). A directed graph [Formula: see text] associated with any code X mirrors the properties of the code. In the present paper, we demonstrate a necessary condition for the self-complementarity of an arbitrary code X in terms of the graph theory. The same condition has been proven to be sufficient for codes which are circular and of large size [Formula: see text] trinucleotides, in particular for maximal circular codes ([Formula: see text] trinucleotides). For codes of small-size [Formula: see text] trinucleotides, some very rare counterexamples have been constructed. Furthermore, the length and the structure of the longest paths in the graphs associated with the self-complementary circular codes are investigated. It has been proven that the longest paths in such graphs determine the reading frame for the self-complementary circular codes. By applying this result, the reading frame in any arbitrary sequence of trinucleotides is retrieved after at most 15 nucleotides, i.e., 5 consecutive trinucleotides, from the circular code X identified in genes. Thus, an X motif of a length of at least 15 nucleotides in an arbitrary sequence of trinucleotides (not necessarily all of them belonging to X) uniquely defines the reading (correct) frame, an important criterion for analyzing the X motifs in genes in the future.

A sharper view of Pal 5's tails: discovery of stream perturbations with a novel non-parametric technique

NASA Astrophysics Data System (ADS)

Erkal, Denis; Koposov, Sergey E.; Belokurov, Vasily

2017-09-01

Only in the Milky Way is it possible to conduct an experiment that uses stellar streams to detect low-mass dark matter subhaloes. In smooth and static host potentials, tidal tails of disrupting satellites appear highly symmetric. However, perturbations from dark subhaloes, as well as from GMCs and the Milky Way bar, can induce density fluctuations that destroy this symmetry. Motivated by the recent release of unprecedentedly deep and wide imaging data around the Pal 5 stellar stream, we develop a new probabilistic, adaptive and non-parametric technique that allows us to bring the cluster's tidal tails into clear focus. Strikingly, we uncover a stream whose density exhibits visible changes on a variety of angular scales. We detect significant bumps and dips, both narrow and broad: two peaks on either side of the progenitor, each only a fraction of a degree across, and two gaps, ˜2° and ˜9° wide, the latter accompanied by a gargantuan lump of debris. This largest density feature results in a pronounced intertail asymmetry which cannot be made consistent with an unperturbed stream according to a suite of simulations we have produced. We conjecture that the sharp peaks around Pal 5 are epicyclic overdensities, while the two dips are consistent with impacts by subhaloes. Assuming an age of 3.4 Gyr for Pal 5, these two gaps would correspond to the characteristic size of gaps created by subhaloes in the mass range of 106-107 M⊙ and 107-108 M⊙, respectively. In addition to dark substructure, we find that the bar of the Milky Way can plausibly produce the asymmetric density seen in Pal 5 and that GMCs could cause the smaller gap.

Modeling the Gravitational Potential of a Cosmological Dark Matter Halo with Stellar Streams

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sanderson, Robyn E.; Hartke, Johanna; Helmi, Amina, E-mail: robyn@astro.columbia.edu

2017-02-20

Stellar streams result from the tidal disruption of satellites and star clusters as they orbit a host galaxy, and can be very sensitive probes of the gravitational potential of the host system. We select and study narrow stellar streams formed in a Milky-Way-like dark matter halo of the Aquarius suite of cosmological simulations, to determine if these streams can be used to constrain the present day characteristic parameters of the halo’s gravitational potential. We find that orbits integrated in both spherical and triaxial static Navarro–Frenk–White potentials reproduce the locations and kinematics of the various streams reasonably well. To quantify thismore » further, we determine the best-fit potential parameters by maximizing the amount of clustering of the stream stars in the space of their actions. We show that using our set of Aquarius streams, we recover a mass profile that is consistent with the spherically averaged dark matter profile of the host halo, although we ignored both triaxiality and time evolution in the fit. This gives us confidence that such methods can be applied to the many streams that will be discovered by the Gaia mission to determine the gravitational potential of our Galaxy.« less

Stream ecosystem response to limestone treatment in acid impacted watersheds of the allegheny plateau

USGS Publications Warehouse

McClurg, S.E.; Petty, J.T.; Mazik, P.M.; Clayton, J.L.

2007-01-01

Restoration programs are expanding worldwide, but assessments of restoration effectiveness are rare. The objectives of our study were to assess current acid-precipitation remediation programs in streams of the Allegheny Plateau ecoregion of West Virginia (USA), identify specific attributes that could and could not be fully restored, and quantify temporal trends in ecosystem recovery. We sampled water chemistry, physical habitat, periphyton biomass, and benthic macroinvertebrate and fish community structure in three stream types: acidic (four streams), naturally circumneutral (eight streams), and acidic streams treated with limestone sand (eight streams). We observed no temporal trends in ecosystem recovery in treated streams despite sampling streams that ranged from 2 to 20 years since initial treatment. Our results indicated that the application of limestone sand to acidic streams was effective in fully recovering some characteristics, such as pH, alkalinity, Ca2+, Ca:H ratios, trout biomass and density, and trout reproductive success. However, recovery of many other characteristics was strongly dependent upon spatial proximity to treatment, and still others were never fully recovered. For example, limestone treatment did not restore dissolved aluminum concentrations, macroinvertebrate taxon richness, and total fish biomass to circumneutral reference conditions. Full recovery may not be occurring because treated streams continue to drain acidic watersheds and remain isolated in a network of acidic streams. We propose a revised stream restoration plan for the Allegheny Plateau that includes restoring stream ecosystems as connected networks rather than isolated reaches and recognizes that full recovery of acidified watersheds may not be possible. ?? 2007 by the Ecological Society of America.

Electrostatic streaming instability modes in complex viscoelastic quantum plasmas

NASA Astrophysics Data System (ADS)

Karmakar, P. K.; Goutam, H. P.

2016-11-01

A generalized quantum hydrodynamic model is procedurally developed to investigate the electrostatic streaming instability modes in viscoelastic quantum electron-ion-dust plasma. Compositionally, inertialess electrons are anticipated to be degenerate quantum particles owing to their large de Broglie wavelengths. In contrast, inertial ions and dust particulates are treated in the same classical framework of linear viscoelastic fluids (non-Newtonian). It considers a dimensionality-dependent Bohmian quantum correction prefactor, γ = [(D - 2)/3D], in electron quantum dynamics, with D symbolizing the problem dimensionality. Applying a regular Fourier-formulaic plane-wave analysis around the quasi-neutral hydrodynamic equilibrium, two distinct instabilities are explored to exist. They stem in ion-streaming (relative to electrons and dust) and dust-streaming (relative to electrons and ions). Their stability is numerically illustrated in judicious parametric windows in both the hydrodynamic and kinetic regimes. The non-trivial influential roles by the relative streams, viscoelasticities, and correction prefactor are analyzed. It is seen that γ acts as a stabilizer for the ion-stream case only. The findings alongside new entailments, as special cases of realistic interest, corroborate well with the earlier predictions in plasma situations. Applicability of the analysis relevant in cosmic and astronomical environments of compact dwarf stars is concisely indicated.

Ambient groundwater flow diminishes nitrate processing in the hyporheic zone of streams

NASA Astrophysics Data System (ADS)

Azizian, Morvarid; Boano, Fulvio; Cook, Perran L. M.; Detwiler, Russell L.; Rippy, Megan A.; Grant, Stanley B.

2017-05-01

Modeling and experimental studies demonstrate that ambient groundwater reduces hyporheic exchange, but the implications of this observation for stream N-cycling is not yet clear. Here we utilize a simple process-based model (the Pumping and Streamline Segregation or PASS model) to evaluate N-cycling over two scales of hyporheic exchange (fluvial ripples and riffle-pool sequences), ten ambient groundwater and stream flow scenarios (five gaining and losing conditions and two stream discharges), and three biogeochemical settings (identified based on a principal component analysis of previously published measurements in streams throughout the United States). Model-data comparisons indicate that our model provides realistic estimates for direct denitrification of stream nitrate, but overpredicts nitrification and coupled nitrification-denitrification. Riffle-pool sequences are responsible for most of the N-processing, despite the fact that fluvial ripples generate 3-11 times more hyporheic exchange flux. Across all scenarios, hyporheic exchange flux and the Damköhler Number emerge as primary controls on stream N-cycling; the former regulates trafficking of nutrients and oxygen across the sediment-water interface, while the latter quantifies the relative rates of organic carbon mineralization and advective transport in streambed sediments. Vertical groundwater flux modulates both of these master variables in ways that tend to diminish stream N-cycling. Thus, anthropogenic perturbations of ambient groundwater flows (e.g., by urbanization, agricultural activities, groundwater mining, and/or climate change) may compromise some of the key ecosystem services provided by streams.

Measurement of the Circular Dichroism of Electronic Transitions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sutherland, J.C.

2010-08-11

This chapter describes the measurement of circular dichroism (CD) for absorption due to transitions between two distinct electronic states. This is distinguished from absorption of lower energy photons, which are associated with changes of only the vibrational modes of the absorber and from the absorption of higher energy photons, which may result in ionizations. From the instrumental viewpoint, the chapter describes the measurement of CD that can be recorded using a photomultiplier or avalanche photodiode to quantify the intensity of a light beam, a photoelastic modulator to periodically alter the beam's polarization, and a monochromator located between the light sourcemore » and the modulator. Using either criterion, the focus is on the spectral domain spanning about a decade in wavelength (photon energy) from roughly 1.2 {micro}m (1 eV {approx} 160 zJ) in the near infrared to 120 nm (10 eV {approx} 1.6 aJ) in the vacuum ultraviolet (VUV). In the near infrared, there is overlap between the domain of electronic and purely vibrational transitions, the use of photomultipliers or avalanche photodiodes versus solid state detectors and dispersive versus Fourier-transform spectrometers. There is also some overlap in the VUV with synchrotron beamlines that use arrays of magnets called 'insertion devices' to cause the emitted synchrotron radiation to be elliptically polarized. To my knowledge, no single spectrometer spans this entire spectral domain discussed here, and the vast majority of laboratory instruments come nowhere close to either the upper or lower limit. However, similar analytical approaches and types of instrumentation are employed throughout this spectral domain and thus are logically treated together. The focus in this chapter is on the measurement of CD resulting from the inherent chirality of the absorbing system. Several spectroscopic methods that are closely related in terms of science or instrumentation are treated in other chapters. These include

n-Nucleotide circular codes in graph theory.

PubMed

Fimmel, Elena; Michel, Christian J; Strüngmann, Lutz

2016-03-13

The circular code theory proposes that genes are constituted of two trinucleotide codes: the classical genetic code with 61 trinucleotides for coding the 20 amino acids (except the three stop codons {TAA,TAG,TGA}) and a circular code based on 20 trinucleotides for retrieving, maintaining and synchronizing the reading frame. It relies on two main results: the identification of a maximal C(3) self-complementary trinucleotide circular code X in genes of bacteria, eukaryotes, plasmids and viruses (Michel 2015 J. Theor. Biol. 380, 156-177. (doi:10.1016/j.jtbi.2015.04.009); Arquès & Michel 1996 J. Theor. Biol. 182, 45-58. (doi:10.1006/jtbi.1996.0142)) and the finding of X circular code motifs in tRNAs and rRNAs, in particular in the ribosome decoding centre (Michel 2012 Comput. Biol. Chem. 37, 24-37. (doi:10.1016/j.compbiolchem.2011.10.002); El Soufi & Michel 2014 Comput. Biol. Chem. 52, 9-17. (doi:10.1016/j.compbiolchem.2014.08.001)). The univerally conserved nucleotides A1492 and A1493 and the conserved nucleotide G530 are included in X circular code motifs. Recently, dinucleotide circular codes were also investigated (Michel & Pirillo 2013 ISRN Biomath. 2013, 538631. (doi:10.1155/2013/538631); Fimmel et al. 2015 J. Theor. Biol. 386, 159-165. (doi:10.1016/j.jtbi.2015.08.034)). As the genetic motifs of different lengths are ubiquitous in genes and genomes, we introduce a new approach based on graph theory to study in full generality n-nucleotide circular codes X, i.e. of length 2 (dinucleotide), 3 (trinucleotide), 4 (tetranucleotide), etc. Indeed, we prove that an n-nucleotide code X is circular if and only if the corresponding graph [Formula: see text] is acyclic. Moreover, the maximal length of a path in [Formula: see text] corresponds to the window of nucleotides in a sequence for detecting the correct reading frame. Finally, the graph theory of tournaments is applied to the study of dinucleotide circular codes. It has full equivalence between the combinatorics

Outlier detection in a new half-circular distribution

NASA Astrophysics Data System (ADS)

Rambli, Adzhar; Mohamed, Ibrahim Bin; Shimizu, Kunio; Khalidin, Nurliza

2015-10-01

In this paper, we use a discordancy test based on spacing theory to detect outlier in a half-circular data. Up to now, numerous discordancy tests have been proposed to detect outlier in circular distributions which are defined in [0,2π). However, some circular data lie within just half of this range. Therefore, first we introduce a new half-circular distribution developed using the inverse stereographic projection technique on a gamma distributed variable. Then, we develop a new discordancy test to detect single or multiple outliers in the half-circular data based on the spacing theory. We show the practical value of the test by applying it to an eye data set obtained from a glaucoma clinic at the University of Malaya Medical Centre, Malaysia.

The inviscid axisymmetric stability of the supersonic flow along a circular cylinder

NASA Technical Reports Server (NTRS)

Duck, Peter W.

1990-01-01

The supersonic flow past a thin straight circular cylinder is investigated. The associated boundary-layer flow (i.e. the velocity and temperature field) is computed; the asymptotic, far downstream solution is obtained, and compared with the full numerical results. The inviscid, linear, axisymmetric (temporal) stability of this boundary layer is also studied. A so-called 'doubly generalized' inflexion condition is derived, which is a condition for the existence of so-called 'subsonic' neutral modes. The eigenvalue problem (for the complex wavespeed) is computed for two free-stream Mach numbers (2.8 and 3.8), and this reveals that curvature has a profound effect on the stability of the flow. The first unstable inviscid mode is seen to disappear rapidly as curvature is introduced, while the second (and generally the most important) mode suffers a substantially reduced amplification rate.

A failure of conflict to modulate dual-stream processing may underlie the formation and maintenance of delusions.

PubMed

Speechley, W J; Murray, C B; McKay, R M; Munz, M T; Ngan, E T C

2010-03-01

Dual-stream information processing proposes that reasoning is composed of two interacting processes: a fast, intuitive system (Stream 1) and a slower, more logical process (Stream 2). In non-patient controls, divergence of these streams may result in the experience of conflict, modulating decision-making towards Stream 2, and initiating a more thorough examination of the available evidence. In delusional schizophrenia patients, a failure of conflict to modulate decision-making towards Stream 2 may reduce the influence of contradictory evidence, resulting in a failure to correct erroneous beliefs. Delusional schizophrenia patients and non-patient controls completed a deductive reasoning task requiring logical validity judgments of two-part conditional statements. Half of the statements were characterized by a conflict between logical validity (Stream 2) and content believability (Stream 1). Patients were significantly worse than controls in determining the logical validity of both conflict and non-conflict conditional statements. This between groups difference was significantly greater for the conflict condition. The results are consistent with the hypothesis that delusional schizophrenia patients fail to use conflict to modulate towards Stream 2 when the two streams of reasoning arrive at incompatible judgments. This finding provides encouraging preliminary support for the Dual-Stream Modulation Failure model of delusion formation and maintenance. 2009 Elsevier Masson SAS. All rights reserved.

Shallow groundwater mercury supply in a coastal plain stream

USGS Publications Warehouse

Bradley, Paul M.; Journey, Celeste A.; Lowery, Mark A.; Brigham, Mark E.; Burns, Douglas A.; Button, Daniel T.; Chapelle, Francis H.; Lutz, Michelle A.; Marvin-DiPasquale, Mark C.; Riva-Murray, Karen

2012-01-01

Fluvial methylmercury (MeHg) is attributed to methylation in up-gradient wetland areas. This hypothesis depends on efficient wetland-to-stream hydraulic transport under nonflood and flood conditions. Fluxes of water and dissolved (filtered) mercury (Hg) species (FMeHg and total Hg (FTHg)) were quantified in April and July of 2009 in a reach at McTier Creek, South Carolina to determine the relative importance of tributary surface water and shallow groundwater Hg transport from wetland/floodplain areas to the stream under nonflood conditions. The reach represented less than 6% of upstream main-channel distance and 2% of upstream basin area. Surface-water discharge increased within the reach by approximately 10%. Mean FMeHg and FTHg fluxes increased within the reach by 23–27% and 9–15%, respectively. Mass balances indicated that, under nonflood conditions, the primary supply of water, FMeHg, and FTHg within the reach (excluding upstream surface water influx) was groundwater discharge, rather than tributary transport from wetlands, in-stream MeHg production, or atmospheric Hg deposition. These results illustrate the importance of riparian wetland/floodplain areas as sources of fluvial MeHg and of groundwater Hg transport as a fundamental control on Hg supply to Coastal Plain streams.

Shallow Groundwater Mercury Supply in a Coastal Plain Stream

PubMed Central

2012-01-01

Fluvial methylmercury (MeHg) is attributed to methylation in up-gradient wetland areas. This hypothesis depends on efficient wetland-to-stream hydraulic transport under nonflood and flood conditions. Fluxes of water and dissolved (filtered) mercury (Hg) species (FMeHg and total Hg (FTHg)) were quantified in April and July of 2009 in a reach at McTier Creek, South Carolina to determine the relative importance of tributary surface water and shallow groundwater Hg transport from wetland/floodplain areas to the stream under nonflood conditions. The reach represented less than 6% of upstream main-channel distance and 2% of upstream basin area. Surface-water discharge increased within the reach by approximately 10%. Mean FMeHg and FTHg fluxes increased within the reach by 23–27% and 9–15%, respectively. Mass balances indicated that, under nonflood conditions, the primary supply of water, FMeHg, and FTHg within the reach (excluding upstream surface water influx) was groundwater discharge, rather than tributary transport from wetlands, in-stream MeHg production, or atmospheric Hg deposition. These results illustrate the importance of riparian wetland/floodplain areas as sources of fluvial MeHg and of groundwater Hg transport as a fundamental control on Hg supply to Coastal Plain streams. PMID:22734594

Lung Cancer-Specific Circular RNAs as Biomarkers

DTIC Science & Technology

2017-08-01

Award Number: W81XWH-16-1-0239 TITLE: Lung Cancer-Specific Circular RNAs as Biomarkers PRINCIPAL INVESTIGATOR: Yin-Yuan Mo CONTRACTING...Specific Circular RNAs as Biomarkers 5a. CONTRACT NUMBER 5b. GRANT NUMBER W81XWH-16-1-0239 5c. PROGRAM ELEMENT NUMBER 6. AUTHOR(S) Yin-Yuan Mo Betty...14. ABSTRACT The major goal of this application is to determine whether lung cancer cells differentially express circular RNAs such that these

Photoexcitation circular dichroism in chiral molecules

NASA Astrophysics Data System (ADS)

Beaulieu, S.; Comby, A.; Descamps, D.; Fabre, B.; Garcia, G. A.; Géneaux, R.; Harvey, A. G.; Légaré, F.; Mašín, Z.; Nahon, L.; Ordonez, A. F.; Petit, S.; Pons, B.; Mairesse, Y.; Smirnova, O.; Blanchet, V.

2018-05-01

Chiral effects appear in a wide variety of natural phenomena and are of fundamental importance in science, from particle physics to metamaterials. The standard technique of chiral discrimination—photoabsorption circular dichroism—relies on the magnetic properties of a chiral medium and yields an extremely weak chiral response. Here, we propose and demonstrate an orders of magnitude more sensitive type of circular dichroism in neutral molecules: photoexcitation circular dichroism. This technique does not rely on weak magnetic effects, but takes advantage of the coherent helical motion of bound electrons excited by ultrashort circularly polarized light. It results in an ultrafast chiral response and the efficient excitation of a macroscopic chiral density in an initially isotropic ensemble of randomly oriented chiral molecules. We probe this excitation using linearly polarized laser pulses, without the aid of further chiral interactions. Our time-resolved study of vibronic chiral dynamics opens a way to the efficient initiation, control and monitoring of chiral chemical change in neutral molecules at the level of electrons.

All-dielectric metasurface circular dichroism waveplate

PubMed Central

Hu, Jingpei; Zhao, Xiaonan; Lin, Yu; Zhu, Aijiao; Zhu, Xiaojun; Guo, Peiji; Cao, Bing; Wang, Chinhua

2017-01-01

We propose and experimentally demonstrate a high efficient circularly polarizing dichroism waveplate (CPDW) using a Si-based all-dielectric 2Dchiral metasurface. We demonstrate that the CPDW exhibits a unique dichroism in that it functions as a transmissive quarter waveplate for one of either left-or right-handed circularly polarized incident lightand a reflective mirror for the opposite polarization. The circular polarization dichroism (CPD = IRCP − ILCP) in transmission at wavelength ~1.5 μm reaches 97% and the extinction ratio (ER = IRCP/ILCP) is as high as 345:1. Experimental fabrications and measurements of the proposed all-dielectric metasurface are implemented and found to be in excellent agreement with the simulations. The proposed all-dielectric chiral metasurface is of advantages of high-dichroism, easy-fabrication and standard semiconductor fabrication techniques compatible, which could lead to enhanced security in fiber and free-space communications, as well as imaging and sensing applications for circularly polarized light with a highly integrated photonic platform. PMID:28139753

Main-channel slopes of selected streams in Iowa for estimation of flood-frequency discharges

USGS Publications Warehouse

Eash, David A.

2003-01-01

This report describes a statewide study conducted to develop main-channel slope (MCS) curves for 138 selected streams in Iowa with drainage areas greater than 100 square miles. MCS values determined from the curves can be used in regression equations for estimating floodfrequency discharges. Multivariable regression equations previously developed for two of the three hydrologic regions defined for Iowa require the measurement of MCS. Main-channel slope is a difficult measurement to obtain for large streams using 1:24,000-scale topographic maps. The curves developed in this report provide a simplified method for determining MCS values for sites located along large streams in Iowa within hydrologic Regions 2 and 3. The curves were developed using MCS values quantified for 2,058 selected sites along 138 selected streams in Iowa. A geographic information system (GIS) technique and 1:24,000-scale topographic data were used to quantify MCS values for the stream sites. The sites were selected at about 5-mile intervals along the streams. River miles were quantified for each stream site using a GIS program. Data points for river-mile and MCS values were plotted and a best-fit curve was developed for each stream. An adjustment was applied to all 138 curves to compensate for differences in MCS values between manual measurements and GIS quantifications. The multivariable equations for Regions 2 and 3 were developed using manual measurements of MCS. A comparison of manual measurements and GIS quantifications of MCS indicates that manual measurements typically produce greater values of MCS compared to GIS quantifications. Median differences between manual measurements and GIS quantifications of MCS are 14.8 and 17.7 percent for Regions 2 and 3, respectively. Comparisons of percentage differences between flood-frequency discharges calculated using MCS values of manual measurements and GIS quantifications indicate that use of GIS values of MCS for Region 3 substantially

Numerical Studies of Flow Past Two Side-by-Side Circular Cylinders

NASA Astrophysics Data System (ADS)

Shao, J.; Zhang, C.

Multiple circular cylindrical configurations are widely used in engineering applications. The fluid dynamics of the flow around two identical circular cylinders in side-by-side arrangement has been investigated by both experiments and numerical simulations. The center-to-center transverse pitch ratio T/D plays an important role in determining the flow features. It is observed that for 1 < T/D < 1.1 to 1.2, a single vortex street is formed; for 1.2< T/D < 2 to 2.2, bi-stable narrow and wide wakes are formed; for 2.7< T/D < 4 or 5, anti-phase or in-phase vortex streets are formed. In the current study, the vortex structures of turbulent flows past two slightly heated side-by-side circular cylinders are investigated employing the large eddy simulation (LES). Simulations are performed using a commercial CFD software, FLUENT. The Smagorinsky-Lilly subgrid-scale model is employed for the large eddy simulation. The Reynolds number based on free-stream velocity and cylinder diameter is 5 800, which is in the subcritical regime. The transverse pitch ratio T/D = 3 is investigated. Laminar boundary layer, transition in shear layer, flow separation, large vortex structures and flow interference in the wake are all involved in the flow. Such complex flow features make the current study a challenging task. Both flow field and temperature field are investigated. The calculated results are analyzed and compared with experimental data. The simulation results are qualitatively in accordance with experimental observations. Two anti-phase vortex streets are obtained by the large-eddy simulation, which agrees with the experimental observation. At this transverse pitch ratio, these two cylinders behave as independent, isolated single cylinder in cross flow. The time-averaged streamwise velocity and temperature at x/D=10 are in good agreement with the experimental data. Figure1 displays the instantaneous spanwise vorticity at the center plane.

Circular RNA participates in the carcinogenesis and the malignant behavior of cancer.

PubMed

Zhao, Zhen-Jun; Shen, Jun

2017-05-04

Circular RNAs (circRNAs) are long, non-coding RNAs that result from the non-canonical splicing of linear pre-mRNAs. However, the characteristics and the critical role of circRNA in co-/post-transcriptional regulation were not well recognized until the "microRNA sponge" function of circRNA is discovered. Recent studies have mainly been devoted to the function of the circular RNA sponge for miR-7 (ciRS-7) and sex-determining region Y (SRY) by targeting microRNA-7 (miR-7) and microRNA-138 (miR-138), respectively. In this review, we illustrate the specific role of circRNAs in a wide variety of cancers and in regulating the biological behavior of cancers via miR-7 or miR-138 regulation. Furthermore, circRNA, together with its gene silencing ability, also shows its potential in RNA interference (RNAi) therapy by binding to target RNAs, which provides a novel perspective in cancer treatment. Thus, this review concerns the biogenesis, biological function, oncogenesis, progression and possible therapies for cancer involving circRNAs.

Circular RNA participates in the carcinogenesis and the malignant behavior of cancer

PubMed Central

Zhao, Zhen-Jun; Shen, Jun

2017-01-01

Abstract Circular RNAs (circRNAs) are long, non-coding RNAs that result from the non-canonical splicing of linear pre-mRNAs. However, the characteristics and the critical role of circRNA in co-/post-transcriptional regulation were not well recognized until the “microRNA sponge” function of circRNA is discovered. Recent studies have mainly been devoted to the function of the circular RNA sponge for miR-7 (ciRS-7) and sex-determining region Y (SRY) by targeting microRNA-7 (miR-7) and microRNA-138 (miR-138), respectively. In this review, we illustrate the specific role of circRNAs in a wide variety of cancers and in regulating the biological behavior of cancers via miR-7 or miR-138 regulation. Furthermore, circRNA, together with its gene silencing ability, also shows its potential in RNA interference (RNAi) therapy by binding to target RNAs, which provides a novel perspective in cancer treatment. Thus, this review concerns the biogenesis, biological function, oncogenesis, progression and possible therapies for cancer involving circRNAs. PMID:26649774

Are bryophytes useful indicators of hydrologic permanence in forested headwater streams?

EPA Science Inventory

Court cases have recently questioned whether all headwater streams, particularly non-perennial streams, should be protected in the U.S. under the Clean Water Act. Rapid field-based indicators of hydrologic permanence are needed for jurisdictional determinations. The study objecti...

Microstrip Antenna Generates Circularly Polarized Beam