Gully evolution and geomorphic adjustments of badlands to reforestation

PubMed Central

Ballesteros Cánovas, J. A.; Stoffel, M.; Martín-Duque, J. F.; Corona, C.; Lucía, A.; Bodoque, J. M.; Montgomery, D. R.

2017-01-01

Badlands and gullied areas are among those geomorphic environments with the highest erosion rates worldwide. Nevertheless, records of their evolution and their relations with anthropogenic land transformation are scarcer. Here we combine historical data with aerial photographs and tree-ring records to reconstruct the evolution of a badland in a Mediterranean environment of Central Spain. Historical sources suggest an anthropogenic origin of this badland landscape, caused by intense quarrying activities during the 18th century. Aerial photographs allowed detection of dramatic geomorphic changes and the evolution of an emerging vegetation cover since the 1960s, due to widespread reforestation. Finally, tree-ring analyses of exposed roots allowed quantification of recent channel incision of the main gully, and sheet erosion processes. Our results suggest that reforestation practices have influenced the initiation of an episode of incision in the main channel in the 1980s, through the hypothesized creation of disequilibrium in water-sediment balance following decoupling of hillslopes from channel processes. These findings imply an asymmetry in the geomorphic response of badlands to erosion such that in the early evolution stages, vegetation removal results in gullying, but that reforestation alone does not necessarily stabilize the landforms and may even promote renewed incision. PMID:28327591

The topographic signature of anthropogenic geomorphic processes

NASA Astrophysics Data System (ADS)

Tarolli, P.; Sofia, G.

2014-12-01

Within an abiotic-dominated context, geomorphologic patterns and dynamics are single expressions of trade-offs between the physical resistance forces, and the mechanical and chemical forces related to climate and erosion. Recently, however, it has become essential for the geomorphological community to take into account also biota as a fundamental geomorphologic agent acting from local to regional scales. However, while there is a recent flourishing literature about the impacts of vegetation on geomorphic processes, the study of anthropogenic pressure on geomorphology is still at its early stages. Humans are indeed among the most prominent geomorphic agents, redistributing land surface, and causing drastic changes to the geomorphic organization of the landscape (e.g. intensive agriculture, urbanization), with direct consequences on land degradation and watershed response. The reconstruction or identification of artificial or anthropogenic topographies, therefore, provides a mechanism for quantifying anthropogenic changes to the landscape systems in the context of the Anthropocene epoch. High-resolution topographic data derived from the recent remote sensing technologies (e.g. lidar, SAR, SfM), offer now new opportunities to recognize better understand geomorphic processes from topographic signatures, especially in engineered landscapes where the direct anthropic alteration of processes is significant. It is possible indeed to better recognize human-induced geomorphic and anthropogenic features (e.g. road networks, agricultural terraces), and the connected erosion. The study presented here may allow improved understanding and targeted mitigation of the processes driving geomorphic changes during urban development and help guide future research directions for development-based watershed studies. Human society is deeply affecting the environment with consequences on the landscape. It is therefore fundamental to establish greater management control over the Earth

River Sensitivity and Catchment Connectivity: Key Controls on Geomorphic Response and Effectiveness

NASA Astrophysics Data System (ADS)

Lisenby, P.; Fryirs, K.; Croke, J.

2016-12-01

The sensitivity of river channels to adjustment and the dynamics of sediment connectivity along a channel network are key controls on the capacity (ability) for a river system to adjust, i.e. the severity, distribution, and type of geomorphic response to disturbance events. In turn, the cumulative impact of geomorphic responses compared with event magnitude will determine the geomorphic effectiveness of a single disturbance event. River sensitivity and sediment connectivity can change significantly over space and time, and vary with changes in internal factors such as channel type and geomorphic landform and external factors such as event sequencing and lithological controls. Correspondingly, the capacity for a geomorphic system to respond to disturbance events will also vary, so that geomorphic effectiveness is not definitively characterized by a static relationship between event magnitude and geomorphic response, but rather is a dynamic comparison between geomorphic response and an actively changing capacity for geomorphic adjustment. Herein, we use the Lockyer Valley, Queensland as a case study to illustrate the variability of river sensitivity and sediment connectivity. We relate this variability to the potential and capacity for geomorphic channel response. We find that the sensitivity to and capacity for geomorphic adjustment varies significantly with channel morphometry and valley position. Additionally, the nature of bedload sediment connectivity changes with the distribution of geomorphic landforms and channel weirs that can impede sediment transference through the system. This variability of river sensitivity and sediment connectivity will control the nature of geomorphic response to disturbance events within the Lockyer Valley. Ultimately, determinations of geomorphic effectiveness for disturbance events will depend on comparisons of their geomorphic impacts with the capacity of the Lockyer geomorphic system to respond.

The geomorphic effectiveness of a large flood on the Rio Grande in the Big Bend region: insights on geomorphic controls and post-flood geomorphic response

USGS Publications Warehouse

Dean, David J.; Schmidt, John C.

2013-01-01

Since the 1940s, the Rio Grande in the Big Bend region has undergone long periods of channel narrowing, which have been occasionally interrupted by rare, large floods that widen the channel (termed a channel reset). The most recent channel reset occurred in 2008 following a 17-year period of extremely low stream flow and rapid channel narrowing. Flooding was caused by precipitation associated with the remnants of tropical depression Lowell in the Rio Conchos watershed, the largest tributary to the Rio Grande. Floodwaters approached 1500 m3/s (between a 13 and 15 year recurrence interval) and breached levees, inundated communities, and flooded the alluvial valley of the Rio Grande; the wetted width exceeding 2.5 km in some locations. The 2008 flood had the 7th largest magnitude of record, however, conveyed the largest volume of water than any other flood. Because of the narrow pre-flood channel conditions, record flood stages occurred. We used pre- and post-flood aerial photographs, channel and floodplain surveys, and 1-dimensional hydraulic models to quantify the magnitude of channel change, investigate the controls of flood-induced geomorphic changes, and measure the post-flood response of the widened channel. These analyses show that geomorphic changes included channel widening, meander migration, avulsions, extensive bar formation, and vertical floodplain accretion. Reach-averaged channel widening between 26 and 52% occurred, but in some localities exceeded 500%. The degree and style of channel response was related, but not limited to, three factors: 1) bed-load supply and transport, 2) pre-flood channel plan form, and 3) rapid declines in specific stream power downstream of constrictions and areas of high channel bed slope. The post-flood channel response has consisted of channel contraction through the aggradation of the channel bed and the formation of fine-grained benches inset within the widened channel margins. The most significant post-flood geomorphic

Quantitative geomorphologic studies from spaceborne platforms

NASA Technical Reports Server (NTRS)

Williams, R. S., Jr.

1985-01-01

Although LANDSAT images of our planet represent a quantum improvement in the availability of a global image-data set for independent or comparative regional geomorphic studies of landforms, such images have several limitations which restrict their suitability for quantitative geomorphic investigations. The three most serious deficiencies are: (1) photogrammetric inaccuracies, (2) two-dimensional nature of the data, and (3) spatial resolution. These deficiencies are discussed, as well as the use of stereoscopic images and laser altimeter data.

Don't fight the site: three geomorphic considerations in catchment-scale river rehabilitation planning.

PubMed

Brierley, Gary; Fryirs, Kirstie

2009-06-01

Three geomorphic considerations that underpin the design and implementation of realistic and strategic river conservation and rehabilitation programs that work with the nature are outlined. First, the importance of appreciating the inherent diversity of river forms and processes is discussed. Second, river dynamics are appraised, framing the contemporary behavioral regime of a reach in relation to system evolution to explain changes to river character and behavior over time. Third, the trajectory of a reach is framed in relation to downstream patterns of river types, analyzing landscape connectivity at the catchment scale to interpret geomorphic river recovery potential. The application of these principles is demonstrated using extensive catchment-scale analyses of geomorphic river responses to human disturbance in the Bega and Upper Hunter catchments in southeastern Australia. Differing implications for reach- and catchment-scale rehabilitation planning prompt the imperative that management practices work with nature rather than strive to 'fight the site.'

Geomorphic Controls on Floodplain Soil Organic Carbon in the Yukon Flats, Interior Alaska, From Reach to River Basin Scales

NASA Astrophysics Data System (ADS)

Lininger, K. B.; Wohl, E.; Rose, J. R.

2018-03-01

Floodplains accumulate and store organic carbon (OC) and release OC to rivers, but studies of floodplain soil OC come from small rivers or small spatial extents on larger rivers in temperate latitudes. Warming climate is causing substantial change in geomorphic process and OC fluxes in high latitude rivers. We investigate geomorphic controls on floodplain soil OC concentrations in active-layer mineral sediment in the Yukon Flats, interior Alaska. We characterize OC along the Yukon River and four tributaries in relation to geomorphic controls at the river basin, segment, and reach scales. Average OC concentration within floodplain soil is 2.8% (median = 2.2%). Statistical analyses indicate that OC varies among river basins, among planform types along a river depending on the geomorphic unit, and among geomorphic units. OC decreases with sample depth, suggesting that most OC accumulates via autochthonous inputs from floodplain vegetation. Floodplain and river characteristics, such as grain size, soil moisture, planform, migration rate, and riverine DOC concentrations, likely influence differences among rivers. Grain size, soil moisture, and age of surface likely influence differences among geomorphic units. Mean OC concentrations vary more among geomorphic units (wetlands = 5.1% versus bars = 2.0%) than among study rivers (Dall River = 3.8% versus Teedrinjik River = 2.3%), suggesting that reach-scale geomorphic processes more strongly control the spatial distribution of OC than basin-scale processes. Investigating differences at the basin and reach scale is necessary to accurately assess the amount and distribution of floodplain soil OC, as well as the geomorphic controls on OC.

Near-census Delineation of Laterally Organized Geomorphic Zones and Associated Sub-width Fluvial Landforms

NASA Astrophysics Data System (ADS)

Pasternack, G. B.; Hopkins, C.

2017-12-01

A river channel and its associated riparian corridor exhibit a pattern of nested, geomorphically imprinted, lateral inundation zones (IZs). Each zone plays a key role in fluvial geomorphic processes and ecological functions. Within each zone, distinct landforms (aka geomorphic or morphological units, MUs) reside at the 0.1-10 channel width scale. These features are basic units linking river corridor morphology with local ecosystem services. Objective, automated delineation of nested inundation zones and morphological units remains a significant scientific challenge. This study describes and demonstrates new, objective methods for solving this problem, using the 35-km alluvial lower Yuba River as a testbed. A detrended, high-resolution digital elevation model constructed from near-census topographic and bathymetric data was produced and used in a hypsograph analysis, a commonly used method in oceanographic studies capable of identifying slope breaks at IZ transitions. Geomorphic interpretation mindful of the river's setting was required to properly describe each IZ identified by the hypsograph analysis. Then, a 2D hydrodynamic model was used to determine what flow yields the wetted area that most closely matches each IZ domain. The model also provided meter-scale rasters of depth and velocity useful for MU mapping. Even though MUs are discharge-independent landforms, they can be revealed by analyzing their overlying hydraulics at low flows. Baseflow depth and velocity rasters are used along with a hydraulic landform classification system to quantitatively delineate in-channel bed MU types. In-channel bar and off-channel flood and valley MUs are delineated using a combination of hydraulic and geomorphic indicators, such as depth and velocity rasters for different discharges, topographic contours, NAIP imagery, and a raster of vegetation. The ability to objectively delineate inundation zones and morphological units in tandem allows for better informed river management

Geomorphic analyses from space imagery

NASA Technical Reports Server (NTRS)

Morisawa, M.

1985-01-01

One of the most obvious applications of space imagery to geomorphological analyses is in the study of drainage patterns and channel networks. LANDSAT, high altitude photography and other types of remote sensing imagery are excellent for depicting stream networks on a regional scale because of their broad coverage in a single image. They offer a valuable tool for comparing and analyzing drainage patterns and channel networks all over the world. Three aspects considered in this geomorphological study are: (1) the origin, evolution and rates of development of drainage systems; (2) the topological studies of network and channel arrangements; and (3) the adjustment of streams to tectonic events and geologic structure (i.e., the mode and rate of adjustment).

The geomorphic evolution of the lunar surface.

NASA Technical Reports Server (NTRS)

Ronca, L. B.

1972-01-01

The solution of the function relating craters of the continuous degradation sequence with degree of erosion was defined as the geomorphic index of the area. Studies of the geomorphic index of stratigraphic surfaces show that areas covered by considerable ballistic sediments have a geomorphic index which is not a monotonic function of time. On the other hand, areas covered almost exclusively by mare flooding show an index which is a monotonic function of the age of the flooding. As each mare surface shows a considerable range in indices, it is concluded that maria are covered by surfaces formed through a considerable length of time. By using Apollo 11 and 12 radiometric ages it is suggested that the time of mare flooding lasted on the order of one billion years. The geomorphic index of highland surfaces shows a remarkable degree of order - i.e., the farther an area is inland from the mare shores, the higher will be the index. No explanation is given for this phenomenon, but it is suggested that lunar erosion is not just a localized phenomenon centered on the locus of an impact, but has lateral trends of regional dimensions.

Geomorphic reclmation of a coal refuse pile

NASA Astrophysics Data System (ADS)

Hopkinson, L. C.; Quaranta, J.

2017-12-01

Geomorphic reclamation is a technique that may offer opportunities to improve mine reclamation in Central Appalachia. The design approach is based on constructing a steady-state, mature landform condition and takes into account the long-term climatic conditions, soil types, terrain grade, and vegetation. Geomorphic reclamation has been applied successfully in semi-arid regions but has not yet been applied in Central Appalachia. This work describes a demonstration study where geomorphic landforming techniques are being applied to a coarse coal refuse pile in southern West Virginia, USA. The reclamation design includes four geomorphic watersheds that radially drain runoff from the pile. Each watershed has one central draining channel and incorporates compound slope profiles similarly to naturally eroded slopes. Planar slopes were also included to maintain the impacted area. The intent is to alter the hydrology to decrease water quality treatment costs. The excavation cut and fill volumes are comparable to those of more conventional refuse pile reclamation designs. If proven successful then this technique can be part of a cost-effective solution to improve water quality at active and future refuse facilities, abandoned mine lands, bond forfeiture sites, landfills, and major earthmoving activities within the region.

Human-induced shifts in geomorphic process rates: An example of landslide activity following forest cover change.

NASA Astrophysics Data System (ADS)

Guns, Marie; Balthazar, Vincent; Vanacker, Veerle

2013-04-01

Mountain regions present unique challenges and opportunities to land use change research. Very few, if any, mountain ecosystems remain unaffected by human impact. Based on the exemplary evidence from local case studies, it is not yet possible to have an overall assessment of the extent and impact of human activities on mountain erosion as mountain regions are typically characterized by rapid changes in geomorphic, cryospheric, climatic, hydrologic, ecological and socio-economic conditions over relatively short distances. Here, we present a conceptual model that allows evaluating human-induced shifts in geomorphic process rates. The basic idea behind this model is that the magnitude-frequency distribution of geomorphic processes is dependent on the intensity of human disturbance. The conceptual model is here applied for characterising landslide activity following forest cover change. We selected a tropical Andean catchment with a deforestation rate of 1.4% over the last 45 years. Landslide inventories were established based on historical aerial photographs (1963, 1977, and 1989) and very high-resolution satellite images (2010). Statistical analyses show that the total number of landslides is rising, and that they are increasingly associated with human disturbances (deforestation, road construction). This is particularly the case for shallow landslides that become more frequent after clearcutting. As the human-induced shifts in landslide activity are significant for the low-magnitude events only, the total impact on geomorphic process rates is rather limited in this particular area. This work shows that including information on the magnitude-frequency of geomorphic events before, during and after human disturbances offers new possibilities to quantify the complex response of geomorphic processes to human disturbances.

The Promise for Geomorphic Discovery in the South.

ERIC Educational Resources Information Center

Mossa, Joann

1998-01-01

Presents an overview of current geomorphic research in the southern United States. Conveys that the limited historical effort offers both challenges and opportunities for conducting geomorphic work in the region; much is unknown about these unique landscapes. States applied and theoretical geomorphology will benefit the society and future of the…

Characterizing the geomorphic setting of precariously balanced rocks using terrestrial laser scanning technology

NASA Astrophysics Data System (ADS)

Haddad, D. E.; Arrowsmith, R.

2009-12-01

Terrestrial laser scanning (TLS) technology is rapidly becoming an effective three-dimensional imaging tool. Precariously balanced rocks are a subset of spheroidally weathered boulders. They are balanced on bedrock pedestals and are formed in upland drainage basins and pediments of exhumed plutons. Precarious rocks are used as negative evidence of earthquake-driven extreme ground motions. Field surveys of PBRs are coupled with cosmogenic radionuclide (CRN) surface exposure dating techniques to determine their exhumation rates. These rates are used in statistical simulations to estimate the magnitudes and recurrences of earthquake-generated extreme ground shaking as a means to physically validate seismic hazard analyses. However, the geomorphic setting of PBRs in the landscape is poorly constrained when interpreting their exhumation rates from CRN surface exposure dates. Are PBRs located on steep or gentle hillslopes? Are they located near drainages or hillslope crests? What geomorphic processes control the spatial distribution of PBRs in a landscape, and where do these processes dominate? Because the fundamental hillslope transport laws are largely controlled by local hillslope gradient and contributing area, the location of a PBR is controlled by the geomorphic agents and their rates acting on it. Our latest efforts involve using a combination of TLS and airborne laser swath mapping (ALSM) to characterize the geomorphic situation of PBRs. We used a Riegl LPM 800i (LPM 321) terrestrial laser scanner to scan a ~1.5 m tall by ~1 m wide precariously balanced rock in the Granite Dells, central Arizona. The PBR was scanned from six positions, and the scans were aligned to a point cloud totaling 3.4M points. We also scanned a ~50 m by ~150 m area covering PBR hillslopes from five scan positions. The resulting 5.5M points were used to create a digital terrain model of precarious rocks and their hillslopes. Our TLS- and ALSM-generated surface models and DEMs provide a

The efficacy of stream power and flow duration on geomorphic responses to catastrophic flooding

NASA Astrophysics Data System (ADS)

Magilligan, F. J.; Buraas, E. M.; Renshaw, C. E.

2015-01-01

River, channel widening was spatially infrequent and limited in magnitude; however, other geomorphic effects were profound (1) the entrainment, transport, and deposition of extremely coarse material; (2) stripping of floodplain surfaces; (3) channel avulsions and incision into Pleistocene-aged material; and (4) deposition of coarse material across floodplains. Based on our extensive field data and hydrologic/hydraulic analyses, we contend that short duration, high energy flows can have profound sedimentological effects but have limited erosive, channel widening impacts. Gravel entrainment and deposition of a catastrophic nature can certainly occur under these flow regimes, but the impacts of these extreme flows on channel geometry may have limited expression.

Multivariate geomorphic analysis of forest streams: Implications for assessment of land use impacts on channel condition

Treesearch

Richard. D. Wood-Smith; John M. Buffington

1996-01-01

Multivariate statistical analyses of geomorphic variables from 23 forest stream reaches in southeast Alaska result in successful discrimination between pristine streams and those disturbed by land management, specifically timber harvesting and associated road building. Results of discriminant function analysis indicate that a three-variable model discriminates 10...

Quantifying the Geomorphic Dynamics of the Extensively Impacted Lower Yuba River

NASA Astrophysics Data System (ADS)

Wyrick, J. R.; Pasternack, G. B.; Carley, J. K.; Barker, R.; Massa, D.; Bratovich, P.; Reedy, G.; Johnson, T.

2010-12-01

Traditionally it is has been thought that rivers possess the capability of adjusting their attributes to accommodate varying flow and sediment transport regimes so that sediment in- and out-fluxes are balanced and landform conditions are “stable”. In reality, however, geomorphic drivers and boundary conditions are much more independently dynamic than classically envisioned, such that landforms may always be in a state of adjustment that is normal and appropriate. Rather than thinking of landforms as stable, it is more appropriate to think of them, and the ecosystem services with which they are associated, as resilient in response to change. Knowledge of historic, pre-human baseline conditions or regional reference conditions is limited and may not be as applicable in understanding natural geomorphic and ecosystem services as once envisioned. In light of this natural complexity, a geomorphic assessment of conditions after a large dam or other facility is built and operated may not be as simple as documenting geomorphic instability and attributing that to human impacts relative to the presumed stable baseline conditions. Rather than compare anthropogenically-impacted conditions to theoretical baseline or reference conditions, a more effective approach is to deduce the geomorphic processes in a system under different regimes and evaluate the implications for resiliency of ecosystem services. Through a mechanistic understanding of environmental systems, it may be possible to rationally rehabilitate an ecosystem to achieve resiliency in cases where it has been lost or is desirable to instill, even if it was not historically present. This analytic paradigm is being used to assess the history and on-going geomorphic dynamism of the lower Yuba River (LYR) in northern California. Despite a legacy of massive hydraulic mining waste deposition, dredger re-working of the river valley, dam construction, and flow regulation, the river has been described as lacking the

Geomorphic Complexity of Sequential Fire and Floods in Mountain Watersheds

NASA Astrophysics Data System (ADS)

Brogan, D. J.; Nelson, P. A.; MacDonald, L. H.; Morgan, J. A.

2017-12-01

Fires and floods are important drivers of fluvial geomorphic changes. While each has been studied independently, there have been almost no situations where the hydrologic and geomorphic effects of fires and extreme floods could be compared at the watershed scale. Following the 2012 High Park fire in montane northcentral Colorado we began intensively monitoring channel changes in two 15 km2 watersheds (Skin Gulch and Hill Gulch) burned primarily at moderate to high severity. Summer thunderstorms resulted in extensive hillslope erosion and deposition in the valley bottoms, and subsequent incision through these deposits occurred due to spring snowmelt and elevated baseflows. The complex response associated with this state change from unburned to burned can be completely disrupted and overwhelmed by the larger changes resulting from extreme floods. Fifteen months after burning, both watersheds experienced an extreme flood resulting from a long-duration rainstorm; however, the geomorphic changes resulting from this flood differed markedly between the two watersheds. In Skin Gulch, sustained high flows from the September 2013 flood excavated nearly all of the accumulated sediment, expanded the active channel, and either scoured to bedrock or armored the bed with coarser substrate. Geomorphic changes in Hill Gulch due to the September 2013 flood, however, were small. The disparity between watersheds is likely the legacy of the catastrophic 1976 Big Thompson flood, which scoured out much of the previously accumulated sediment in Hill Gulch but did not appreciably impact Skin Gulch. These different sequences of disturbances indicate that fires in the Rocky Mountains often generate significant and dynamic geomorphic changes over sub-decadal timescales, while extreme floods can result in much longer lasting geomorphic changes. Our results allow us to compare the geomorphic sensitivity for different sequences of fire and floods, and propose a new conceptual model to explain

Global seafloor geomorphic features map: applications for ocean conservation and management

NASA Astrophysics Data System (ADS)

Harris, P. T.; Macmillan-Lawler, M.; Rupp, J.; Baker, E.

2013-12-01

Seafloor geomorphology, mapped and measured by marine scientists, has proven to be a very useful physical attribute for ocean management because different geomorphic features (eg. submarine canyons, seamounts, spreading ridges, escarpments, plateaus, trenches etc.) are commonly associated with particular suites of habitats and biological communities. Although we now have better bathymetric datasets than ever before, there has been little effort to integrate these data to create an updated map of seabed geomorphic features or habitats. Currently the best available global seafloor geomorphic features map is over 30 years old. A new global seafloor geomorphic features map (GSGM) has been created based on the analysis and interpretation of the SRTM (Shuttle Radar Topography Mission) 30 arc-second (~1 km) global bathymetry grid. The new map includes global spatial data layers for 29 categories of geomorphic features, defined by the International Hydrographic Organisation. The new geomorphic features map will allow: 1) Characterization of bioregions in terms of their geomorphic content (eg. GOODS bioregions, Large Marine Ecosystems (LMEs), ecologically or biologically significant areas (EBSA)); 2) Prediction of the potential spatial distribution of vulnerable marine ecosystems (VME) and marine genetic resources (MGR; eg. associated with hydrothermal vent communities, shelf-incising submarine canyons and seamounts rising to a specified depth); and 3) Characterization of national marine jurisdictions in terms of their inventory of geomorphic features and their global representativeness of features. To demonstrate the utility of the GSGM, we have conducted an analysis of the geomorphic feature content of the current global inventory of marine protected areas (MPAs) to assess the extent to which features are currently represented. The analysis shows that many features have very low representation, for example fans and rises have less than 1 per cent of their total area

Stream power framework for predicting geomorphic change: The 2013 Colorado Front Range flood

NASA Astrophysics Data System (ADS)

Yochum, Steven E.; Sholtes, Joel S.; Scott, Julian A.; Bledsoe, Brian P.

2017-09-01

The Colorado Front Range flood of September 2013 induced a diverse range of geomorphic changes along numerous stream corridors, providing an opportunity to assess responses to a large flood in a semiarid landscape. We defined six classes of geomorphic change related to peak unit stream power and valley confinement for 531 stream reaches over 226 km, spanning a gradient of channel scales and slope. Geomorphic change was generally driven by erosion of channel margins in confined reaches and by a combination of deposition and erosion in unconfined reaches. The magnitude of geomorphic change typically increased with unit stream power (ω), with greater responses observed in unconfined channels. Cumulative logit modeling indicated that total stream power or unit stream power, unit stream power gradient, and valley confinement are significant predictors of geomorphic response for this flood event. Based on this dataset, thresholds for geomorphic adjustment were defined. For channel slopes < 3%, we noted a credible potential for substantial channel widening with ω > 230 W/m2 (16 lb/ft-s; at least 10% of the investigated sites experienced substantial channel widening) and a credible potential for avulsions, braiding, and loss of adjacent road embankments associated with ω > 480 W/m2 (33 lb/ft-s; at least 10% of the investigated sites experienced such geomorphic change). Infrequent to numerous eroded banks were very likely with ω > 700 W/m2 (48 lb/ft-s), with substantial channel widening or major geomorphic change shifting from credible to likely. Importantly, in reaches where there were large reductions in ω as the valley form shifted from confined to relatively unconfined, large amounts of deposition-induced, reach-scale geomorphic change occurred in some locations at relatively low ω. Additionally, alluvial channels with slopes > 3% had greater resistance to geomorphic change, likely caused by armoring by larger bed material and increased flow resistance from

Geomorphic effectiveness of long profile shape and role of inherent geological controls, Ganga River Basin, India

NASA Astrophysics Data System (ADS)

Sonam, Sonam; Jain, Vikrant

2017-04-01

River long profile is one of the fundamental geomorphic parameters which provides a platform to study interaction of geological and geomorphic processes at different time scales. Long profile shape is governed by geological processes at 10 ^ 5 - 10 ^ 6 years' time scale and it controls the modern day (10 ^ 0 - 10 ^ 1 years' time scale) fluvial processes by controlling the spatial variability of channel slope. Identification of an appropriate model for river long profile may provide a tool to analyse the quantitative relationship between basin geology, profile shape and its geomorphic effectiveness. A systematic analysis of long profiles has been carried for the Himalayan tributaries of the Ganga River basin. Long profile shape and stream power distribution pattern is derived using SRTM DEM data (90 m spatial resolution). Peak discharge data from 34 stations is used for hydrological analysis. Lithological variability and major thrusts are marked along the river long profile. The best fit of long profile is analysed for power, logarithmic and exponential function. Second order exponential function provides the best representation of long profiles. The second order exponential equation is Z = K1*exp(-β1*L) + K2*exp(-β2*L), where Z is elevation of channel long profile, L is the length, K and β are coefficients of the exponential function. K1 and K2 are the proportion of elevation change of the long profile represented by β1 (fast) and β2 (slow) decay coefficients of the river long profile. Different values of coefficients express the variability in long profile shapes and is related with the litho-tectonic variability of the study area. Channel slope of long profile is estimated taking the derivative of exponential function. Stream power distribution pattern along long profile is estimated by superimposing the discharge and long profile slope. Sensitivity analysis of stream power distribution with decay coefficients of the second order exponential equation is

Geomorphic constraints on the evolution of the Kern Gorge, southern Sierra Nevada, California.

NASA Astrophysics Data System (ADS)

Foreshee, B. C.; Krugh, W. C.

2016-12-01

The Kern River is uniquely positioned to respond to tectonic activity that occurs within the southern Sierra Nevada and southern San Joaquin Basin, CA. The North and South forks of the upper Kern River (above Lake Isabella) are fed by tributaries that primarily drain the high-elevation low-relief landscape of the Kern Plateau. These south flowing trunk streams switch to a dominantly southwest flow direction at the Lake Isabella Reservoir and South Lake Valley respectively. Downstream from Lake Isabella, the Kern River steepens as it flows through the Kern Gorge and then crosses the Kern Arch region of the San Joaquin Basin. Clark et al., (2005) used low-temperature thermochronometry and trunk and tributary channel profiles from the upper Kern River catchment to identify two periods of rapid incision that occurred from 32.0 to 3.5 Ma and from 3.5 Ma to present. Cecil et al., (2014) used low-temperature thermochronometry from well cores of Oligocene-Miocene sandstones to investigate the time-temperature history of the Kern Arch and identified a period of subsidence and sedimentation between 6.0 and 1.0 Ma that was immediately followed by rapid exhumation. They attributed these results to the northwest migration of a delaminating lithospheric root. In this study we examine the erosional and depositional history within the Kern Gorge to investigate the response of the Kern River to Pliocene-Pleistocene tectonic activity within the Kern Arch and southern Sierra Nevada. Quantitative stream profile analyses and geomorphic mapping within the Kern Gorge are being conducted using USGS 10m DEM data, satellite and aerial imagery, and field based observations and measurements. Reconnaissance mapping efforts have so far identified several strath terraces, alluvial fill terraces, colluvial deposits, and multiple debris flow and landslide deposits that have been incised by the Kern River and are now preserved above the active channel. These geomorphic landforms are currently being

Tracking Geomorphic Signatures of Watershed Suburbanization with Multi-Temporal LiDAR

EPA Science Inventory

Urban development practices redistribute surface materials through filling, grading and terracing, causing drastic changes to the geomorphic organization of the landscape. Many studies document the hydrologic, biologic, or geomorphic consequences of urbanization using space-for-t...

How does landscape structure influence catchment transit time across different geomorphic provinces?

USGS Publications Warehouse

Tetzlaff, D.; Seibert, J.; McGuire, K.J.; Laudon, H.; Burns, Douglas A.; Dunn, S.M.; Soulsby, C.

2009-01-01

Despite an increasing number of empirical investigations of catchment transit times (TTs), virtually all are based on individual catchments and there are few attempts to synthesize understanding across different geographical regions. Uniquely, this paper examines data from 55 catchments in five geomorphic provinces in northern temperate regions (Scotland, United States of America and Sweden). The objective is to understand how the role of catchment topography as a control on the TTs differs in contrasting geographical settings. Catchment inverse transit time proxies (ITTPs) were inferred by a simple metric of isotopic tracer damping, using the ratio of standard deviation of ??18O in streamwater to the standard deviation of ??18O in precipitation. Quantitative landscape analysis was undertaken to characterize the catchments according to hydrologically relevant topographic indices that could be readily determined from a digital terrain model (DTM). The nature of topographic controls on transit times varied markedly in different geomorphic regions. In steeper montane regions, there are stronger gravitational influences on hydraulic gradients and TTs tend to be lower in the steepest catchments. In provinces where terrain is more subdued, direct topographic control weakened; in particular, where flatter areas with less permeable soils give rise to overland flow and lower TTs. The steeper slopes within this flatter terrain appear to have a greater coverage of freely draining soils, which increase sub-surface flow, therefore increasing TTs. Quantitative landscape analysis proved a useful tool for intercatchment comparison. However, the critical influence of sub-surface permeability and connectivity may limit the transferability of predictive tools of hydrological function based on topographic parameters alone. Copyright ?? 2009 John Wiley & Sons, Ltd.

Geomorphic Consequences of Volcanic Eruptions in Alaska: A Review

USGS Publications Warehouse

Waythomas, Christopher F.

2015-01-01

Eruptions of Alaska volcanoes have significant and sometimes profound geomorphic consequences on surrounding landscapes and ecosystems. The effects of eruptions on the landscape can range from complete burial of surface vegetation and preexisting topography to subtle, short-term perturbations of geomorphic and ecological systems. In some cases, an eruption will allow for new landscapes to form in response to the accumulation and erosion of recently deposited volcaniclastic material. In other cases, the geomorphic response to a major eruptive event may set in motion a series of landscape changes that could take centuries to millennia to be realized. The effects of volcanic eruptions on the landscape and how these effects influence surface processes has not been a specific focus of most studies concerned with the physical volcanology of Alaska volcanoes. Thus, what is needed is a review of eruptive activity in Alaska in the context of how this activity influences the geomorphology of affected areas. To illustrate the relationship between geomorphology and volcanic activity in Alaska, several eruptions and their geomorphic impacts will be reviewed. These eruptions include the 1912 Novarupta–Katmai eruption, the 1989–1990 and 2009 eruptions of Redoubt volcano, the 2008 eruption of Kasatochi volcano, and the recent historical eruptions of Pavlof volcano. The geomorphic consequences of eruptive activity associated with these eruptions are described, and where possible, information about surface processes, rates of landscape change, and the temporal and spatial scale of impacts are discussed.A common feature of volcanoes in Alaska is their extensive cover of glacier ice, seasonal snow, or both. As a result, the generation of meltwater and a variety of sediment–water mass flows, including debris-flow lahars, hyperconcentrated-flow lahars, and sediment-laden water floods, are typical outcomes of most types of eruptive activity. Occasionally, such flows can be quite

Geomorphic consequences of volcanic eruptions in Alaska: A review

USGS Publications Warehouse

Waythomas, Christopher F.

2015-01-01

Eruptions of Alaska volcanoes have significant and sometimes profound geomorphic consequences on surrounding landscapes and ecosystems. The effects of eruptions on the landscape can range from complete burial of surface vegetation and preexisting topography to subtle, short-term perturbations of geomorphic and ecological systems. In some cases, an eruption will allow for new landscapes to form in response to the accumulation and erosion of recently deposited volcaniclastic material. In other cases, the geomorphic response to a major eruptive event may set in motion a series of landscape changes that could take centuries to millennia to be realized. The effects of volcanic eruptions on the landscape and how these effects influence surface processes has not been a specific focus of most studies concerned with the physical volcanology of Alaska volcanoes. Thus, what is needed is a review of eruptive activity in Alaska in the context of how this activity influences the geomorphology of affected areas. To illustrate the relationship between geomorphology and volcanic activity in Alaska, several eruptions and their geomorphic impacts will be reviewed. These eruptions include the 1912 Novarupta–Katmai eruption, the 1989–1990 and 2009 eruptions of Redoubt volcano, the 2008 eruption of Kasatochi volcano, and the recent historical eruptions of Pavlof volcano. The geomorphic consequences of eruptive activity associated with these eruptions are described, and where possible, information about surface processes, rates of landscape change, and the temporal and spatial scale of impacts are discussed.A common feature of volcanoes in Alaska is their extensive cover of glacier ice, seasonal snow, or both. As a result, the generation of meltwater and a variety of sediment–water mass flows, including debris-flow lahars, hyperconcentrated-flow lahars, and sediment-laden water floods, are typical outcomes of most types of eruptive activity. Occasionally, such flows can be quite

75 FR 29537 - Draft Transportation Conformity Guidance for Quantitative Hot-spot Analyses in PM2.5

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-26

... Quantitative Hot- spot Analyses in PM 2.5 and PM 10 Nonattainment and Maintenance Areas AGENCY: Environmental... finalized, this guidance would help state and local agencies complete quantitative PM 2.5 and PM 10 hot-spot...), EPA stated that quantitative PM 2.5 and PM 10 hot-spot analyses would not be required until EPA...

Geomorphic considerations for erosion prediction

USGS Publications Warehouse

Osterkamp, W.R.; Toy, T.J.

1997-01-01

Current soil-erosion prediction technology addresses processes of rainsplash, overland-flow sediment transport, and rill erosion in small watersheds. The effects of factors determining sediment yield from larger-scale drainage basins, in which sediment movement is controlled by the combined small-scale processes and a complex set of channel and other basin-scale sediment-delivery processes, such as soil creep, bioturbation, and accelerated erosion due to denudation of vegetation, have been poorly evaluated. General suggestions are provided for the development of erosion-prediction technology at the geomorphic or drainage-basin scale based on the separation of sediment-yield data for channel and geomorphic processes from those of field-scale soil loss. An emerging technology must consider: (1) the effects on sediment yield of climate, geology and soils, topography, biotic interactions with other soil processes, and land-use practices; (2) all processes of sediment delivery to a channel system; and (3) the general tendency in most drainage basins for progressively greater sediment storage in the downstream direction.

Assessing geomorphic sensitivity in relation to river capacity for adjustment

NASA Astrophysics Data System (ADS)

Reid, H. E.; Brierley, G. J.

2015-12-01

River sensitivity describes the nature and rate of channel adjustments. An approach to analysis of geomorphic river sensitivity outlined in this paper relates potential sensitivity based on the expected capacity of adjustment for a river type to the recent history of channel adjustment. This approach was trialled to assess low, moderate and high geomorphic sensitivity for four different types of river (10 reaches in total) along the Lower Tongariro River, North Island, New Zealand. Building upon the River Styles framework, river types were differentiated based upon valley setting (width and confinement), channel planform, geomorphic unit assemblages and bed material size. From this, the behavioural regime and potential for adjustment (type and extent) were determined. Historical maps and aerial photographs were geo-rectified and the channel planform digitised to assess channel adjustments for each reach from 1928 to 2007. Floodplain width controlled by terraces, exerted a strong influence upon reach scale sensitivity for the partly-confined, wandering, cobble-bed river. Although forced boundaries occur infrequently, the width of the active channel zone is constrained. An unconfined braided river reach directly downstream of the terrace-confined section was the most geomorphically sensitive reach. The channel in this reach adjusted recurrently to sediment inputs that were flushed through more confined, better connected upstream reaches. A meandering, sand-bed river in downstream reaches has exhibited negligible rates of channel migration. However, channel narrowing in this reach and the associated delta indicate that the system is approaching a threshold condition, beyond which channel avulsion is likely to occur. As this would trigger more rapid migration, this reach is considered to be more geomorphically sensitive than analysis of its low migration rate alone would indicate. This demonstrates how sensitivity is fashioned both by the behavioural regime of a reach

Coastal wetlands, sea level, and the dimensions of geomorphic resilience

NASA Astrophysics Data System (ADS)

Phillips, Jonathan D.

2018-03-01

Geomorphic system resilience is often perceived as an intrinsic property of system structure and interactions but is also related to idiosyncratic place and history factors. The importance of geographical and historical circumstances makes it difficult to generate categorical statements about geomorphic resilience. However, network-based analyses of system structure can be used to determine the dynamical stability (= resilience) based on generally applicable relationships and to determine scenarios of stability or instability. These provide guidelines for assessing place and history factors to assess resilience. A model of coastal wetlands is analyzed, based on interactions among relative sea level, wetland surface elevation, hydroperiod, vegetation, and sedimentation. The system is generally (but not always) dynamically unstable and non-resilient. Because of gradients of environmental factors and patchy distributions of microtopography and vegetation, a coastal wetland landscape may have extensive local variations in stability/resilience and in the key relationships that trigger instabilities. This is illustrated by a case study where dynamically unstable fragmentation is found in two nearby coastal wetlands in North Carolina's Neuse River estuary-Otter Creek Mouth and Anderson Creek. Neither is keeping pace with relative sea level rise, and both show unstable state transitions within the wetland system; but locally stable relationships exist within the wetland systems.

Geomorphic characteristics and classification of Duluth-area streams, Minnesota

USGS Publications Warehouse

Fitzpatrick, Faith A.; Peppler, Marie C.; DePhilip, Michele M.; Lee, Kathy E.

2006-01-01

In 2003 and 2004, a geomorphic assessment of streams in 20 watersheds in the Duluth, Minn., area was conducted to identify and summarize geomorphic characteristics, processes, disturbance mechanisms, and potential responses to disturbance. Methods used to assess the streams included watershed characterization, descriptions of segment slopes and valley types, historical aerial photograph interpretation, and rapid field assessments and intensive field surveys of stream reaches. Geomorphic conditions were summarized into a segment-scale classification with 15 categories mainly based on drainage-network position and slope, and, secondarily, based on geologic setting, valley type, and dominant geomorphic processes. Main causes of geomorphic disturbance included historical logging and agriculture, and ongoing urban development, human-caused channel alterations, road and storm sewer drainage, ditching, hiking trails, and gravel pits or quarries. Geomorphic responses to these disturbances are dependent on a combination of drainage-network position, slope, and geologic setting. Geologic setting is related to drainage-network position because the geologic deposits parallel the Lake Superior shoreline. Headwater streams in large watersheds flow over glacial deposits above altitudes of about 1,200 feet (ft). Headwater tributaries and upper main stems have ditch-like channels with gentle slopes and no valleys. Urban development and road drainage cause increased runoff and flood peaks in these segments resulting in channel widening. Below about 1,200 ft, main-stem segments generally are affected by bedrock type and structure and have steep slopes and confined or entrenched valleys. Increases in flood peaks do not cause incision or widening in the bedrock-controlled valleys; instead, the flow and scour areas are expanded. Feeder tributaries to these main stems have steep, confined valleys and may be sources for sediment from urban areas, road runoff, or storm sewer outfalls. Main

Geomorphic Flood Area (GFA): a QGIS tool for a cost-effective delineation of the floodplains

NASA Astrophysics Data System (ADS)

Samela, Caterina; Albano, Raffaele; Sole, Aurelia; Manfreda, Salvatore

2017-04-01

The importance of delineating flood hazard and risk areas at a global scale has been highlighted for many years. However, its complete achievement regularly encounters practical difficulties, above all the lack of data and implementation costs. In conditions of scarce data availability (e.g. ungauged basins, large-scale analyses), a fast and cost-effective floodplain delineation can be carried out using geomorphic methods (e.g., Manfreda et al., 2011; 2014). In particular, an automatic DEM-based procedure has been implemented in an open-source QGIS plugin named Geomorphic Flood Area - tool (GFA - tool). This tool performs a linear binary classification based on the recently proposed Geomorphic Flood Index (GFI), which exhibited high classification accuracy and reliability in several test sites located in Europe, United States and Africa (Manfreda et al., 2015; Samela et al., 2016, 2017; Samela, 2016). The GFA - tool is designed to make available to all users the proposed procedure, that includes a number of operations requiring good geomorphic and GIS competences. It allows computing the GFI through terrain analysis, turning it into a binary classifier, and training it on the base of a standard inundation map derived for a portion of the river basin (a minimum of 2% of the river basin's area is suggested) using detailed methods of analysis (e.g. flood hazard maps produced by emergency management agencies or river basin authorities). Finally, GFA - tool allows to extend the classification outside the calibration area to delineate the flood-prone areas across the entire river basin. The full analysis has been implemented in this plugin with a user-friendly interface that should make it easy to all user to apply the approach and produce the desired results. Keywords: flood susceptibility; data scarce environments; geomorphic flood index; linear binary classification; Digital elevation models (DEMs). References Manfreda, S., Di Leo, M., Sole, A., (2011). Detection of

Tracking geomorphic signatures of watershed suburbanization with multi-temporal LiDAR

USGS Publications Warehouse

Jones, Daniel K.; Baker, Matthew E.; Miller, Andrew J.; Jarnagin, S. Taylor; Hogan, Dianna M.

2014-01-01

Urban development practices redistribute surface materials through filling, grading, and terracing, causing drastic changes to the geomorphic organization of the landscape. Many studies document the hydrologic, biologic, or geomorphic consequences of urbanization using space-for-time comparisons of disparate urban and rural landscapes. However, no previous studies have documented geomorphic changes from development using multiple dates of high-resolution topographic data at the watershed scale. This study utilized a time series of five sequential light detection and ranging (LiDAR) derived digital elevation models (DEMs) to track watershed geomorphic changes within two watersheds throughout development (2002–2008) and across multiple spatial scales (0.01–1 km2). Development-induced changes were compared against an undeveloped forested watershed during the same time period. Changes in elevations, slopes, hypsometry, and surface flow pathways were tracked throughout the development process to assess watershed geomorphic alterations. Results suggest that development produced an increase in sharp topographic breaks between relatively flat surfaces and steep slopes, replacing smoothly varying hillslopes and leading to greater variation in slopes. Examinations of flowpath distributions highlight systematic modifications that favor rapid convergence in unchanneled upland areas. Evidence of channel additions in the form of engineered surface conduits is apparent in comparisons of pre- and post-development stream maps. These results suggest that topographic modification, in addition to impervious surfaces, contributes to altered hydrologic dynamics observed in urban systems. This work highlights important considerations for the use of repeat LiDAR flights in analyzing watershed change through time. Novel methods introduced here may allow improved understanding and targeted mitigation of the processes driving geomorphic changes during development and help guide future

A conceptual connectivity framework for understanding geomorphic change in human-impacted fluvial systems

NASA Astrophysics Data System (ADS)

Poeppl, Ronald E.; Keesstra, Saskia D.; Maroulis, Jerry

2017-01-01

Human-induced landscape change is difficult to predict due to the complexity inherent in both geomorphic and social systems as well as due to the coupling relationships between them. To better understand system complexity and system response to changing inputs, "connectivity thinking" has become an important recent paradigm within various disciplines including ecology, hydrology and geomorphology. With the presented conceptual connectivity framework on geomorphic change in human-impacted fluvial systems a cautionary note is flagged regarding the need (i) to include and to systematically conceptualise the role of different types of human agency in altering connectivity relationships in geomorphic systems and (ii) to integrate notions of human-environment interactions to connectivity concepts in geomorphology to better explain causes and trajectories of landscape change. Geomorphic response of fluvial systems to human disturbance is shown to be determined by system-specific boundary conditions (incl. system history, related legacy effects and lag times), vegetation dynamics and human-induced functional relationships (i.e. feedback mechanisms) between the different spatial dimensions of connectivity. It is further demonstrated how changes in social systems can trigger a process-response feedback loop between social and geomorphic systems that further governs the trajectory of landscape change in coupled human-geomorphic systems.

A conceptual connectivity framework for understanding geomorphic change in human-impacted fluvial systems

NASA Astrophysics Data System (ADS)

Pöppl, Ronald; Keesstra, Saskia; Maroulis, Jerry

2017-04-01

Human-induced landscape change is difficult to predict due to the complexity inherent in both geomorphic and social systems as well as due to emerging coupling relationships between them. To better understand system complexity and system response to change, connectivity has become an important research paradigm within various disciplines including geomorphology, hydrology and ecology. With the proposed conceptual connectivity framework on geomorphic change in human-impacted fluvial systems a cautionary note is flagged regarding the need (i) to include and to systematically conceptualise the role of different types of human agency in altering connectivity relationships in geomorphic systems and (ii) to integrate notions of human-environment interactions to connectivity concepts in geomorphology to better explain causes and trajectories of landscape change. Underpinned by case study examples, the presented conceptual framework is able to explain how geomorphic response of fluvial systems to human disturbance is determined by system-specific boundary conditions (incl. system history, related legacy effects and lag times), vegetation dynamics and human-induced functional relationships (i.e. feedback mechanisms) between the different spatial dimensions of connectivity. It is further demonstrated how changes in social systems can trigger a process-response feedback loop between social and geomorphic systems that further governs the trajectory of landscape change in coupled human-geomorphic systems.

Assessing the Ecological and Geomorphic Context of Dam Removals in the United States

NASA Astrophysics Data System (ADS)

Magilligan, F. J.; Foley, M.; Torgersen, C. E.; Major, J. J.; Anderson, C.; Connolly, P. J.; Shafroth, P. B.; Evans, J. E.

2016-12-01

Dams have been a fundamental part of our national agenda over the past two hundred years; recently, however, dam removal has emerged as a significant national strategy and more than 1,100 dams have been removed since ca. 1970. A recent national assessment revealed that only 130 of these removals had any ecological or geomorphic assessments, and only 35 included both. To better assess the current state of dam-removal science, we utilized an extensive data set compiled by American Rivers, which contained geospatial attributes of more than 850 dams removed in the U.S. We used this geospatial information in combination with the National Hydrography Dataset (NHDPlus) and other watershed-scale assessment interfaces that provided data on eco-regions, national land cover attributes, and cumulative watershed disturbance to determine the geographic, ecological, and geomorphic context of removed dams. The highest concentration of removed dams is in the Northeast and Upper Midwest. Nationally, they have been removed mainly from 1st order streams, but more than 40% are on 3rd and 4th order streams. Geomorphically, most removals are in lowland settings with 87% at elevations < 450 m and 12% between 450 and 1000 m elevation. Watershed slopes were predominantly <5%. Ecologically, watersheds above removed dams are predominantly forested, mainly in broadleaf deciduous settings of the Ridge and Valley, Northern Piedmont, NE Highland, and NE Coastal Zone EPA Level III eco-region classes. Watershed scale assessments indicate most (37%) removals are in watersheds with the lowest cumulative disturbance scores, showing removals have made high-quality habitat available. Principal component analyses showed a strong correlation of removals based on low slope, low elevation, large watershed area, and low cumulative disturbance. Many of the studied removals also have these characteristics, suggesting that our understanding of responses to dam removals is based on a limited range of ecological

Social-ecological resilience and geomorphic systems

NASA Astrophysics Data System (ADS)

Chaffin, Brian C.; Scown, Murray

2018-03-01

Governance of coupled social-ecological systems (SESs) and the underlying geomorphic processes that structure and alter Earth's surface is a key challenge for global sustainability amid the increasing uncertainty and change that defines the Anthropocene. Social-ecological resilience as a concept of scientific inquiry has contributed to new understandings of the dynamics of change in SESs, increasing our ability to contextualize and implement governance in these systems. Often, however, the importance of geomorphic change and geomorphological knowledge is somewhat missing from processes employed to inform SES governance. In this contribution, we argue that geomorphology and social-ecological resilience research should be integrated to improve governance toward sustainability. We first provide definitions of engineering, ecological, community, and social-ecological resilience and then explore the use of these concepts within and alongside geomorphology in the literature. While ecological studies often consider geomorphology as an important factor influencing the resilience of ecosystems and geomorphological studies often consider the engineering resilience of geomorphic systems of interest, very few studies define and employ a social-ecological resilience framing and explicitly link the concept to geomorphic systems. We present five key concepts-scale, feedbacks, state or regime, thresholds and regime shifts, and humans as part of the system-which we believe can help explicitly link important aspects of social-ecological resilience inquiry and geomorphological inquiry in order to strengthen the impact of both lines of research. Finally, we discuss how these five concepts might be used to integrate social-ecological resilience and geomorphology to better understand change in, and inform governance of, SESs. To compound these dynamics of resilience, complex systems are nested and cross-scale interactions from smaller and larger scales

Geomorphic Function and Restoration Potential of Spring Creeks in Southeastern Idaho: Analysis and Communication

NASA Astrophysics Data System (ADS)

Hanrahan, T. P.; Hill, Z.; Levell, A.; Maguire, T.; Risso, D.

2014-12-01

A large wetland and floodplain complex adjacent to the Snake River in southeastern Idaho, USA, encompasses numerous spring-fed creeks that originate on the floodplain and discharge at their confluence with the Snake River and American Falls Reservoir. Resource managers are implementing a program to restore these spring creeks for the recovery of Yellowstone cutthroat trout and ecosystem health. Our objectives were to evaluate the physical characteristics of these spring creeks, develop a conceptual model of their geomorphic function, compare the restoration potential of individual reaches, and communicate our findings to a broad audience of resource managers and regional stakeholders in order to foster restoration planning. A geomorphic assessment along 38 km of three spring creeks was completed by collecting data at several transects within distinct geomorphic reaches, and by collecting data continuously throughout all reaches. These data were summarized in a GIS database and used to quantify the overall geomorphic functioning of each reach. The geomorphic functional scores were scaled from 0% (non-functional) to 100% (fully functional). Among all three spring creeks, geomorphic function ranged from 29% to 63%, with bank conditions and riparian vegetation being the primary causes of overall channel degradation. Results from the geomorphic assessment fostered the development of a conceptual model for spring creek function, whereby degraded bank conditions represent the primary controlling factor of decreased geomorphic function and fish habitat quality. The reach-based geomorphic functional scoring provides an indicator of relative restoration potential for each reach, and is one of the factors used in determining site-specific priorities for protecting, enhancing, and restoring spring creeks on the Fort Hall Bottoms. The study results, conceptual model and restoration strategy were communicated to resource managers and regional stakeholders through a graphically

Autogenic geomorphic processes determine the resolution and fidelity of terrestrial paleoclimate records.

PubMed

Foreman, Brady Z; Straub, Kyle M

2017-09-01

Terrestrial paleoclimate records rely on proxies hosted in alluvial strata whose beds are deposited by unsteady and nonlinear geomorphic processes. It is broadly assumed that this renders the resultant time series of terrestrial paleoclimatic variability noisy and incomplete. We evaluate this assumption using a model of oscillating climate and the precise topographic evolution of an experimental alluvial system. We find that geomorphic stochasticity can create aliasing in the time series and spurious climate signals, but these issues are eliminated when the period of climate oscillation is longer than a key time scale of internal dynamics in the geomorphic system. This emergent autogenic geomorphic behavior imparts regularity to deposition and represents a natural discretization interval of the continuous climate signal. We propose that this time scale in nature could be in excess of 10 4 years but would still allow assessments of the rates of climate change at resolutions finer than the existing age model techniques in isolation.

Autogenic geomorphic processes determine the resolution and fidelity of terrestrial paleoclimate records

PubMed Central

Foreman, Brady Z.; Straub, Kyle M.

2017-01-01

Terrestrial paleoclimate records rely on proxies hosted in alluvial strata whose beds are deposited by unsteady and nonlinear geomorphic processes. It is broadly assumed that this renders the resultant time series of terrestrial paleoclimatic variability noisy and incomplete. We evaluate this assumption using a model of oscillating climate and the precise topographic evolution of an experimental alluvial system. We find that geomorphic stochasticity can create aliasing in the time series and spurious climate signals, but these issues are eliminated when the period of climate oscillation is longer than a key time scale of internal dynamics in the geomorphic system. This emergent autogenic geomorphic behavior imparts regularity to deposition and represents a natural discretization interval of the continuous climate signal. We propose that this time scale in nature could be in excess of 104 years but would still allow assessments of the rates of climate change at resolutions finer than the existing age model techniques in isolation. PMID:28924607

A Photographic Atlas of Rock Breakdown Features in Geomorphic Environments

NASA Technical Reports Server (NTRS)

Bourke, Mary C. (Editor); Brearley, J. Alexander; Haas, Randall; Viles, Heather A.

2007-01-01

A primary goal of geomorphological enquiry is to make genetic associations between process and form. In rock breakdown studies, the links between process, inheritance and lithology are not well constrained. In particular, there is a need to establish an understanding of feature persistence. That is, to determine the extent to which in situ rock breakdown (e.g., aeolian abrasion or salt weathering) masks signatures of earlier geomorphic transport processes (e.g., fluvial transport or crater ejecta). Equally important is the extent to which breakdown during geomorphic transport masks the imprint of past weathering. The use of rock features in this way raises the important question: Can features on the surface of a rock reliably indicate its geomorphic history? This has not been determined for rock surfaces on Earth or other planets. A first step towards constraining the links between process, inheritance, and morphology is to identify pristine features produced by different process regimes. The purpose of this atlas is to provide a comprehensive image collection of breakdown features commonly observed on boulders in different geomorphic environments. The atlas is intended as a tool for planetary geoscientists and their students to assist in identifying features found on rocks on planetary surfaces. In compiling this atlas, we have attempted to include features that have formed 'recently' and where the potential for modification by another geomorphic process is low. However, we acknowledge that this is, in fact, difficult to achieve when selecting rocks in their natural environment. We group breakdown features according to their formative environment and process. In selecting images for inclusion in the atlas we were mindful to cover a wide range of climatic zones. For example, in the weathering chapter, clast features are shown from locations such as the hyper-arid polar desert of Antarctica and the semi-arid canyons of central Australia. This is important as some

Interdependence of geomorphic and ecologic resilience properties in a geographic context

NASA Astrophysics Data System (ADS)

Anthony Stallins, J.; Corenblit, Dov

2018-03-01

Ecology and geomorphology recognize the dynamic aspects of resistance and resilience. However, formal resilience theory in ecology has tended to deemphasize the geomorphic habitat template. Conversely, landscape sensitivity and state-and-transition models in geomorphology downweight mechanisms of biotic adaptation operative in fluctuating, spatially explicit environments. Adding to the interdisciplinary challenge of understanding complex biogeomorphic systems is that environmental heterogeneity and overlapping gradients of disturbance complicate inference of the geographic patterns of resistance and resilience. We develop a conceptual model for comparing the resilience properties among barrier dunes. The model illustrates how adaptive cycles and panarchies, the formal building blocks of resilience recognized in ecology, can be expressed as a set of hierarchically nested geomorphic and ecological metrics. The variance structure of these data is proposed as a means to delineate different kinds and levels of resilience. Specifically, it is the dimensionality of these data and how geomorphic and ecological variables load on the first and succeeding axes that facilitates the delineation of resistance and resilience. The construction of dune topographic state space from observations among different barrier islands is proposed as a way to measure the interdependence of geomorphic and ecological resilience properties.

Quantitative analyses of bifunctional molecules.

PubMed

Braun, Patrick D; Wandless, Thomas J

2004-05-11

Small molecules can be discovered or engineered to bind tightly to biologically relevant proteins, and these molecules have proven to be powerful tools for both basic research and therapeutic applications. In many cases, detailed biophysical analyses of the intermolecular binding events are essential for improving the activity of the small molecules. These interactions can often be characterized as straightforward bimolecular binding events, and a variety of experimental and analytical techniques have been developed and refined to facilitate these analyses. Several investigators have recently synthesized heterodimeric molecules that are designed to bind simultaneously with two different proteins to form ternary complexes. These heterodimeric molecules often display compelling biological activity; however, they are difficult to characterize. The bimolecular interaction between one protein and the heterodimeric ligand (primary dissociation constant) can be determined by a number of methods. However, the interaction between that protein-ligand complex and the second protein (secondary dissociation constant) is more difficult to measure due to the noncovalent nature of the original protein-ligand complex. Consequently, these heterodimeric compounds are often characterized in terms of their activity, which is an experimentally dependent metric. We have developed a general quantitative mathematical model that can be used to measure both the primary (protein + ligand) and secondary (protein-ligand + protein) dissociation constants for heterodimeric small molecules. These values are largely independent of the experimental technique used and furthermore provide a direct measure of the thermodynamic stability of the ternary complexes that are formed. Fluorescence polarization and this model were used to characterize the heterodimeric molecule, SLFpYEEI, which binds to both FKBP12 and the Fyn SH2 domain, demonstrating that the model is useful for both predictive as well as ex

Geomorphic control of radionuclide diffusion in desert soils

USGS Publications Warehouse

Pelletier, J.D.; Harrington, C.D.; Whitney, J.W.; Cline, M.; DeLong, S.B.; Keating, G.; Ebert, T.K.

2005-01-01

Diffusion is a standard model for the vertical migration of radionuclides in soil profiles. Here we show that diffusivity values inferred from fallout 137CS profiles in soils on the Fortymile Wash alluvial fan, Nye County, Nevada, have a strong inverse correlation with the age of the geomorphic surface. This result suggests that radionuclide-bound particles are predominantly transported by infiltration rather than by bulk-mixing processes such as wetting/ drying, freeze/thaw, and bioturbation. Our results provide a preliminary basis for using soil-geomorphic mapping, point-based calibration data, and the diffusion model to predict radionuclide trans desert soils within a pedotransfer-function approach. Copyright 2005 by the American Geophysical Union.

Relating geomorphic change and grazing to avian communities in riparian forests

USGS Publications Warehouse

Scott, M.L.; Skagen, S.K.; Merligliano, M.F.

2003-01-01

Avian conservation in riparian or bottomland forests requires an understanding of the physical and biotic factors that sustain the structural complexity of riparian vegetation. Riparian forests of western North America are dependent upon flow-related geomorphic processes necessary for establishment of new cottonwood and willow patches. In June 1995, we examined how fluvial geomorphic processes and long-term grazing influence the structural complexity of riparian vegetation and the abundance and diversity of breeding birds along the upper Missouri River in central Montana, a large, flow-regulated, and geomorphically constrained reach. Use by breeding birds was linked to fluvial geomorphic processes that influence the structure of these patches. Species richness and bird diversity increased with increasing structural complexity of vegetation (F1,32 = 75.49, p < 0.0001; F1,32 = 79.76, p < 0.0001, respectively). Bird species composition was significantly correlated with vegetation strata diversity (rs,33 = 0.98, p < 0.0001). Bird abundance in canopy and tall-shrub foraging guilds increased significantly with increasing tree cover and tall-shrub cover (F1,22 = 34.68, p < 0.0001; F1,20 = 22.22, p < 0.0001, respectively). Seventeen bird species, including five species of concern (e.g., Red-eyed Vireo [Vireo olivaceus]), were significantly associated (p < 0.10) with structurally complex forest patches, whereas only six bird species were significantly associated with structurally simple forest patches. We related the structural complexity of 34 riparian vegetation patches to geomorphic change, woody vegetation establishment, and grazing history over a 35-year post-dam period (1953–1988). The structural complexity of habitat patches was positively related to recent sediment accretion (t33 = 3.31, p = 0.002) and vegetation establishment (t20.7 = −3.63, p = 0.002) and negatively related to grazing activity (t19.6 = 3.75, p = 0.001). Avian conservation along rivers like the

Constraints on the topographic evolution of Corsica and Sardinia from geological and geomorphic analyses

NASA Astrophysics Data System (ADS)

Quye-Sawyer, Jennifer; Whittaker, Alexander; Roberts, Gareth; Rood, Dylan

2017-04-01

The western Mediterranean Sea and its surroundings form part of a well-studied region whose geodynamic history is broadly known. However, how the topography of this area has responded to its tectonic and geodynamic influences is not fully understood. In particular, the relative importance of convergent, extensional and dynamic process is not known. Here we focus on the islands of Corsica, France, and Sardinia, Italy, which have played an important role in Alpine-Apennine system. They experienced a similar kinematic history during the Cenozoic, however their different positions on the Tethyan margin allow the relative effects of Alpine collision and rates of back-arc stretching to be compared. In particular, the two stages of back-arc extension (Liguro-Provençal basin to the west and Tyrrhenian Sea on the east) can provide information about how rollback-induced extension developed with time from the late Oligocene to the present. The two islands are historically tectonically quiescent, however they still preserve evidence of collision and subsequent extension from slab roll-back. In this study we have used a combination of geological and geomorphic techniques to provide new constraints into the vertical motions of Corsica and Sardinia. To quantify the spatial and temporal landscape evolution we have integrated stratigraphic, structural and thermochronological data and re-evaluated these alongside present-day geomorphic and geophysical observations. In addition, we have used digital elevation models to acquire 2030 fluvial longitudinal profiles for both islands. Knickpoints identified on these longitudinal profiles have been compared to geological maps to test the influence of rock strength on erosion. Our analysis reveals the presence of non-lithologically controlled knickpoints which we interpret to have been created by Miocene to Recent changes in uplift rate of the landscape. The longitudinal profiles were subsequently used in drainage inversion modelling, whose

Preserving geomorphic data records of flood disturbances

USGS Publications Warehouse

Moody, John A.; Martin, Deborah; Meade, Robert H.

2015-01-01

No central database or repository is currently available in the USA to preserve long-term, spatially extensive records of fluvial geomorphic data or to provide future accessibility. Yet, because of their length and continuity these data are valuable for future research. Therefore, we built a public accessible website to preserve data records of two examples of long-term monitoring (40 and 18 years) of the fluvial geomorphic response to natural disturbances. One disturbance was ∼50-year flood on Powder River in Montana in 1978, and the second disturbance was a catastrophic flood on Spring Creek following a ∼100-year rainstorm after a wildfire in Colorado in 1996.Two critical issues arise relative to preserving fluvial geomorphic data. The first is preserving the data themselves, but the second, and just as important, is preserving information about the location of the field research sites where the data were collected so the sites can be re-located and re-surveyed in the future. The latter allows long-term datasets to be extended into the future and to provide critical background data for interpreting future landscape changes. Data were preserved on a website to allow world-wide accessibility and to upload new data to the website as they become available. We describe the architecture of the website, lessons learned in developing the website, future improvements, and recommendations on how also to preserve information about the location of field research sites.

Qualitative and Quantitative Analyses of Glycogen in Human Milk.

PubMed

Matsui-Yatsuhashi, Hiroko; Furuyashiki, Takashi; Takata, Hiroki; Ishida, Miyuki; Takumi, Hiroko; Kakutani, Ryo; Kamasaka, Hiroshi; Nagao, Saeko; Hirose, Junko; Kuriki, Takashi

2017-02-22

Identification as well as a detailed analysis of glycogen in human milk has not been shown yet. The present study confirmed that glycogen is contained in human milk by qualitative and quantitative analyses. High-performance anion exchange chromatography (HPAEC) and high-performance size exclusion chromatography with a multiangle laser light scattering detector (HPSEC-MALLS) were used for qualitative analysis of glycogen in human milk. Quantitative analysis was carried out by using samples obtained from the individual milks. The result revealed that the concentration of human milk glycogen varied depending on the mother's condition-such as the period postpartum and inflammation. The amounts of glycogen in human milk collected at 0 and 1-2 months postpartum were higher than in milk collected at 3-14 months postpartum. In the milk from mothers with severe mastitis, the concentration of glycogen was about 40 times higher than that in normal milk.

Geomorphic and hydraulic Analyses of In-stream Step-pool Structures (I)

NASA Astrophysics Data System (ADS)

Kuo, W. C.; Hu, Y. L.; Wang, H. W.

2016-12-01

Longitudinal stair-like structures, such as alternating steps and pools, are found commonly in steep mountain streams. In a way to mimic the natural characteristics, many implementations of constructing artificial step structures have long been found in field practice to stabilize streambeds and enhance aquatic systems. To better understand how constructed step-pool systems form and function, this paper discusses the hydraulic and geomorphic factors based on flume experiments, and further compare to our field observations in Chijiawan Creek in Taiwan. We constructed a 2.9-m-long, 0.15-wide, and 0.3-m-high acrylic walled recirculating channel and conducted experiments to understand the formation, hydraulic features, and channel stability of step-pools of scenarios considering different channel slopes, discharges, feeding sediments. The results indicated that the keystones played a crucial role in stabilizing step-pool structures. The grain sizes of keystones from the experiments ranged approximately from one-third to one-tenth of channel width, while those from the field observations were about one-ninth to two-ninths. While the experimental discharge increased from 0.0012 cms to 0.006 cms, the flow transformed from nappe flow to skimming flow and the difference of average velocity between steps and pools reduced 30%. Besides, experiments showed that the step-pool structures failed immediately after keystones destroyed at a sediment transportation rate about 1.5 times of sediment feeding rate. It highlights the step-pools and channel stability is highly related to keystones. We further found the step-pools were buried at the experimental cases with coarse sediment fed upstream, similar to our field observations in Chijiawan Creek, with an approximately 1 3m deposition after Typhoon Soudelor, a 5-year event. The results obtained in this study would serve as a basis for ongoing discussions on how constructed step-pool structures would function and fail. More efforts

Geomorphic Flood Area (GFA): a DEM-based tool for flood susceptibility mapping at large scales

NASA Astrophysics Data System (ADS)

Manfreda, S.; Samela, C.; Albano, R.; Sole, A.

2017-12-01

Flood hazard and risk mapping over large areas is a critical issue. Recently, many researchers are trying to achieve a global scale mapping encountering several difficulties, above all the lack of data and implementation costs. In data scarce environments, a preliminary and cost-effective floodplain delineation can be performed using geomorphic methods (e.g., Manfreda et al., 2014). We carried out several years of research on this topic, proposing a morphologic descriptor named Geomorphic Flood Index (GFI) (Samela et al., 2017) and developing a Digital Elevation Model (DEM)-based procedure able to identify flood susceptible areas. The procedure exhibited high accuracy in several test sites in Europe, United States and Africa (Manfreda et al., 2015; Samela et al., 2016, 2017) and has been recently implemented in a QGIS plugin named Geomorphic Flood Area (GFA) - tool. The tool allows to automatically compute the GFI, and turn it into a linear binary classifier capable of detecting flood-prone areas. To train this classifier, an inundation map derived using hydraulic models for a small portion of the basin is required (the minimum is 2% of the river basin's area). In this way, the GFA-tool allows to extend the classification of the flood-prone areas across the entire basin. We are also defining a simplified procedure for the estimation of the river depth, which may be helpful for large-scale analyses to approximatively evaluate the expected flood damages in the surrounding areas. ReferencesManfreda, S., Nardi, F., Samela, C., Grimaldi, S., Taramasso, A. C., Roth, G., & Sole, A. (2014). Investigation on the use of geomorphic approaches for the delineation of flood prone areas. J. Hydrol., 517, 863-876. Manfreda, S., Samela, C., Gioia, A., Consoli, G., Iacobellis, V., Giuzio, L., & Sole, A. (2016). Flood-prone areas assessment using linear binary classifiers based on flood maps obtained from 1D and 2D hydraulic models. Nat. Hazards, Vol. 79 (2), pp 735-754. Samela, C

What do you mean, 'resilient geomorphic systems'?

NASA Astrophysics Data System (ADS)

Thoms, M. C.; Piégay, H.; Parsons, M.

2018-03-01

Resilience thinking has many parallels in the study of geomorphology. Similarities and intersections exist between the scientific discipline of geomorphology and the scientific concept of resilience. Many of the core themes fundamental to geomorphology are closely related to the key themes of resilience. Applications of resilience thinking in the study of natural and human systems have expanded, based on the fundamental premise that ecosystems, economies, and societies must be managed as linked social-ecological systems. Despite geomorphology and resilience sharing core themes, appreciation is limited of the history and development of geomorphology as a field of scientific endeavor by many in the field of resilience, as well as a limited awareness of the foundations of the former in the more recent emergence of resilience. This potentially limits applications of resilience concepts to the study of geomorphology. In this manuscript we provide a collective examination of geomorphology and resilience as a means to conceptually advance both areas of study, as well as to further cement the relevance and importance of not only understanding the complexities of geomorphic systems in an emerging world of interdisciplinary challenges but also the importance of viewing humans as an intrinsic component of geomorphic systems rather than just an external driver. The application of the concepts of hierarchy and scale, fundamental tenets of the study of geomorphic systems, provide a means to overcome contemporary scale-limited approaches within resilience studies. Resilience offers a framework for geomorphology to expand its application into the broader social-ecological domain.

Seasat radar geomorphic applications in coastal and wetland environments, southeastern U.S

NASA Technical Reports Server (NTRS)

Macdonald, H. C.

1981-01-01

The application of Seasat Synthetic Aperture Radar (SAR) to the assessment of terrain conditions in coastal environments is considered. Drainage patterns and plant community spatial relationships can be adequately mapped as is shown by Seasat L-band imagery of the southeastern Gulf Coast and Atlantic Coastal Plain. Anomalously bright radar signatures are identified as characteristic of mangrove and cypress swamps. Marshes have a low radar return, less than that from non-marsh areas and open water in tidal channels. Drainage patterns for coastal plain transition zones can also be determined. Spaceborne imaging radar provides information which complements geomorphic analyses presently obtained with optical sensors.

Modelling geomorphic responses to human perturbations: Application to the Kander river, Switzerland

NASA Astrophysics Data System (ADS)

Ramirez, Jorge; Zischg, Andreas; Schürmann, Stefan; Zimmermann, Markus; Weingartner, Rolf; Coulthard, Tom; Keiler, Margreth

2017-04-01

Before 1714 the Kander river (Switzerland) flowed into the Aare river causing massive flooding and for this reason the Kander river was deviated (Kander correction) to lake Thun. The Kander correction was a pioneering hydrological project and induced a major human change to the landscape, but had unintended hydrological and geomorphic impacts that cascaded upstream and downstream. For example doubling the catchment area of Lake Thun, which gave rise to major flood problems, cessation of direct sediment delivery to the Aare, and sediment flux to lake Thun forming the Kander delta. More importantly the Kander correction shortened the Kander river and substantially increased the slope and bed shear of the Kander upstream from the correction. Consequently impacts of the correction cascaded upstream as a migrating knickpoint and eroded the river channel at unprecedented rates. Today we may have at our disposal the theoretical and empirical foundations to foresee the consequences of human intervention into natural systems. One method to investigate such geomorphic changes are numerical models that estimate the evolution of rivers by simulating the movement of water and sediment. Although much progress has been made in the development of these geomorphic models, few models have been tested in circumstances with rare perturbations and extreme forcings. As such, it remains uncertain if geomorphic models are useful and stable in extreme situations that include large movements of sediment and water. Here, in this study, we use historic maps and documents to develop a detailed geomorphic model of the Kander river starting in the year 1714. We use this model to simulate the extreme geomorphic events that preceded the deviation of the Kander river into Lake Thun and simulate changes to the river until conditions become relatively stable. We test our model by replicating long term impacts to the river that include 1) rates of incision within the correction, 2) knickpoint

Geomorphic Responses to Stream Channel Restoration at Minebank Run, Baltimore County, Maryland, 2002--2008

EPA Science Inventory

Data collected from 2002 through 2008 were used to assess geomorphic characteristics and geomorphic changes over time in a selected reach of Minebank Run, a small urban watershed near Towson, Maryland, prior to and after its physical restoration in 2004 and 2005. Data collected ...

Comparison between flood prone areas' geomorphic features in the Abruzzo region

NASA Astrophysics Data System (ADS)

Orlando, D.; Giglioni, M.; Magnaldi, S.

2017-07-01

Flood risk maps are one of the main non-structural measures for risk mitigation, but, as the risk knowledge degree is directly proportional to the community interest and financial capability, many sites are devoid of flood inundation areas studies. Recently many authors have investigated the capability of flood prone areas individuation with geomorphological DIGITAL ELEVATION MODEL(DEM) based approaches. These approaches highlight the role of geomorphic features derived from DEM, in this case slope, curvature, elevation, and topographic wetness index, to preliminary inundated areas' identification, without using hydraulic simulations. The present studies aim to analyze the geomorphic features of different hazard levels that lie under the identified inundated areas that have been carried out by the Abruzzo Region Basin Authority. The Aterno-Pescara and Foro river basins have been investigated. The results show that the characteristics of the flooded areas can be clearly distinguished from those of the entire basin,however, the difficultly of geomorphic features in individuatingthe areas of different hazard classifications is obvious.

Altered hydrologic and geomorphic processes and bottomland hardwood plant communities of the lower White River Basin

USGS Publications Warehouse

King, Sammy L.; Keim, Richard F.; Hupp, Cliff R.; Edwards, Brandon L.; Kroschel, Whitney A.; Johnson, Erin L.; Cochran, J. Wesley

2016-09-12

Determine stand establishment patterns of bottomland hardwoods within selected plant communities along three sections of the floodplain. This study provides baseline information on the current geomorphic and hydrologic conditions of the river and can assist in the interpretation of forest responses to past hydrologic and geomorphic processes. Understanding the implications for floodplain forests of geomorphic adjustment in the Lower Mississippi Alluvial Valley is key to managing the region’s valuable resources for a sustainable future.

Intercontinental convergence of stream fish community traits along geomorphic and hydraulic gradients

USGS Publications Warehouse

Lamouroux, N.; Poff, N.L.; Angermeier, P.L.

2002-01-01

Community convergence across biogeographically distinct regions suggests the existence of key, repeated, evolutionary mechanisms relating community characteristics to the environment. However, convergence studies at the community level often involve only qualitative comparisons of the environment and may fail to identify which environmental variables drive community structure. We tested the hypothesis that the biological traits of fish communities on two continents (Europe and North America) are similarly related to environmental conditions. Specifically, from observations of individual fish made at the microhabitat scale (a few square meters) within French streams, we generated habitat preference models linking traits of fish species to local scale hydraulic conditions (Froude number), Using this information, we then predicted how hydraulics and geomorphology at the larger scale of stream reaches (several pool-riffle sequences) should quantitatively influence the trait composition of fish communities. Trait composition for fishes in stream reaches with low Froude number at low flow or high proportion of pools was predicted as nonbenthic, large, fecund, long-lived, nonstreamlined, and weak swimmers. We tested our predictions in contrasting stream reaches in France (n = 11) and Virginia, USA (n = 76), using analyses of covariance to quantify the relative influence of continent vs. physical habitat variables on fish traits. The reach-scale convergence analysis indicated that trait proportions in the communities differed between continents (up to 55% of the variance in each trait was explained by "continent"), partly due to distinct evolutionary histories. However, within continents, trait proportions were comparably related to the hydraulic and geomorphic variables (up to 54% of the variance within continents explained). In particular, a synthetic measure of fish traits in reaches was well explained (50% of its variance) by the Froude number independently of the

Long-term channel adjustment and geomorphic feature creation by vegetation in a lowland, low energy river

NASA Astrophysics Data System (ADS)

Grabowski, Robert; Gurnell, Angela

2016-04-01

Physical habitat restoration is increasingly being used to improve the ecological status of rivers. This is particularly true for lowland streams which are perceived to lack sufficient energy to create new features or to flush out fine sediment derived from agricultural and urban sources. However, this study has found that even in low-energy, base-flow dominated chalk streams, physical habitat improvement can happen naturally without direct human intervention. Furthermore this positive change is achieved by components of the river that are often regarded as management problems: in-stream macrophytes (i.e. weed), riparian trees, woody debris, and most importantly fine sediment. This project investigated the long-term changes in channel planform for the River Frome (Dorset, UK) over the last 120 years and the role of aquatic and riparian vegetation in driving this change. Agricultural census data, historical maps, recent aerial images and field observations were analysed within a process-based, hierarchical framework for hydromorphological assessment, developed in the EU FP7 REFORM project, to investigate the source and timing of fine sediment production in the catchment, to quantify the reach-scale geomorphic response, and to identify vegetation-related bedforms that could be responsible for the adjustment. The analysis reveals that the channel has narrowed and become more sinuous in the last 50-60 years. The timing of this planform adjustment correlates with substantial changes in land use and agricultural practices (post-World War II) that are known to increase soil erosion and sediment connectivity. The field observations and recent aerial images suggest that the increased delivery of fine sediment to the channel has been translated into geomorphic adjustment and diversification though the interactions between vegetation, water flow and sediment. Emergent aquatic macrophytes are retaining fine sediment, leading to the development of submerged shelves that aggrade

Gully evolution and geomorphic adjustments of badlands to recent afforestation

NASA Astrophysics Data System (ADS)

Ballesteros-Cánovas, Juan Antonio; Stoffel, Markus; Francisco Martín-Duque, Jose; Corona, Christophe; Lucia, Ana; María Bodoque, Jose

2016-04-01

Badlands and gullied areas are among the geomorphic environments with the highest erosion rates worldwide, however records on their evolution are very scarce and often limited to presumed initial conditions and the known present state. In this communication, we present a unique and very dense and annual record and outstanding example of erosion processes in a Mediterranean environment in Central Spain, where badland and gullying processes on sandy slopes of a set of mesas have been presumably triggered by quarrying activities since Medieval times. The gully channel evolution here analyzed provides an exceptional example of a larger setting of geomorphic. Besides the analysis of geomorphic adjustments to historical land-use changes induced by historical quarrying and gullying dynamics, we also quantified the impact of current geomorphic adjustments to 20th century afforestation by combining multiproxy such as aerial photography, historical archives, and large dataset of exposed roots to date, quantify, and reconstruct the morphology of a rapidly evolving channel in a gullied catchment. In this analysis, more than 150 exposed roots were analyzed to quantify and report channel incision; widening and gully retreatment rates during the last decades, as well as to quantify sheet erosion on different soil units. Our results suggest that, rather than stabilizing gully evolution, the afforestation carried out during 1960s has played an important role in water-sediment balance and connectivity and would have triggered the initiation of channel incision processes in the 1980s. Therefore, we observe that the channel incision match with a significant increase of the vegetation cover, which leads a significant decrease in sheet erosion rates. Based on our long-term annual gully reconstruction, we observed that sediment delivery does not correlate with the estimated intensity of precipitation (Fourier index). Instead, we observe abrupt morphological changes in the gully are

New England salt marsh pools: A quantitative analysis of geomorphic and geographic features

USGS Publications Warehouse

Adamowicz, S.C.; Roman, C.T.

2005-01-01

New England salt marsh pools provide important wildlife habitat and are the object of on-going salt marsh restoration projects; however, they have not been quantified in terms of their basic geomorphic and geographic traits. An examination of 32 ditched and unditched salt marshes from the Connecticut shore of Long Island Sound to southern Maine, USA, revealed that pools from ditched and unditched marshes had similar average sizes of about 200 m2, averaged 29 cm in depth, and were located about 11 m from the nearest tidal flow. Unditched marshes had 3 times the density (13 pools/ha), 2.5 times the pool coverage (83 m pool/km transect), and 4 times the total pool surface area per hectare (913 m2 pool/ha salt marsh) of ditched sites. Linear regression analysis demonstrated that an increasing density of ditches (m ditch/ha salt marsh) was negatively correlated with pool density and total pool surface area per hectare. Creek density was positively correlated with these variables. Thus, it was not the mere presence of drainage channels that were associated with low numbers of pools, but their type (ditch versus creek) and abundance. Tidal range was not correlated with pool density or total pool surface area, while marsh latitude had only a weak relationship to total pool surface area per hectare. Pools should be incorporated into salt marsh restoration planning, and the parameters quantified here may be used as initial design targets.

Eco-geomorphic controls on slope stability

NASA Astrophysics Data System (ADS)

Hales, T.; Ford, C.; Hwang, T.; Vose, J.; Band, L.

2009-04-01

Vegetation controls soil-mantled landscape evolution primarily through growth of roots into soil and rock. Root-soil interactions affect the spatial distribution and rate of shallow landsliding and other hillslope processes. Yet the distribution and tensile strength of roots depends on a number of geomorphically-influenced parameters, including soil moisture. Our field-based study investigated the effects of topography on root distributions, tensile strengths, and cohesion. Systematic differences in plant species distribution and soil properties are found in the hollow-nose topography of soil-mantled landscapes; with hollows containing thick colluvial soils and mesic tree species and noses containing thinner, more differentiated soils and more xeric species. We investigated whether these topographic variations in geomorphic and ecologic properties affected the spatial distribution of root cohesion by measuring the distribution and tensile strength of roots from soil pits dug downslope of fifteen individual trees in the Coweeta Hydrologic Laboratory, North Carolina. Our soil pits were located to capture variance in plant species (10 species total), topographic positions (nose, hollow), and sizes (a range of DBH between 5 cm and 60 cm). Root tensile strengths showed little variance with different species, but showed strong differences as a function of topography, with nose roots stronger than hollow roots. Similarly, within species, root cellulose content was systematically greater in trees on nose positions compared to those in hollows. For all species, roots were concentrated close to the soil surface (at least 70% of biomass occurred within 50 cm of the surface) and variations in this pattern were primarily a function of topographic position. Hollow roots were more evenly distributed in the soil column than those on noses, yet trees located on noses had higher mean root cohesion than those in hollows because of a higher root tensile force. These data provide an

GEOMORPHIC THRESHOLDS AND CHANNEL MORPHOLOGY IN LARGE RIVERS

EPA Science Inventory

Systematic changes in channel morphology occur as channel gradient, streamflow, and sediment character change and interact. Geomorphic thresholds of various kinds are useful metrics to define these changes along the river network, as they are based on in-channel processes that d...

Relation of urbanization to stream habitat and geomorphic characteristics in nine metropolitan areas of the United States

USGS Publications Warehouse

Fitzpatrick, Faith A.; Peppler, Marie C.

2010-01-01

The relation of urbanization to stream habitat and geomorphic characteristics was examined collectively and individually for nine metropolitan areas of the United States?Portland, Oregon; Salt Lake City, Utah; Denver, Colorado; Dallas?Forth Worth, Texas; Milwaukee?Green Bay, Wisconsin; Birmingham, Alabama; Atlanta, Georgia; Raleigh, North Carolina; and Boston, Massachusetts. The study was part of a larger study conducted by the U.S. Geological Survey from 1999 to 2004 to examine the effects of urbanization on the physical, chemical, and biological components of stream ecosystems. The objectives of the current study were to determine how stream habitat and geomorphic characteristics relate to different aspects of urbanization across a variety of diverse environmental settings and spatial scales. A space-for-time rural-to-urban land-cover gradient approach was used. Reach-scale habitat data and geomorphic characteristic data were collected once during low flow and included indicators of potential habitat degradation such as measures of channel geometry and hydraulics, streambed substrate, low-flow reach volume (an estimate of base-flow conditions), habitat complexity, and riparian/bank conditions. Hydrologic metrics included in the analyses were those expected to be altered by increases in impervious surfaces, such as high-flow frequency and duration, flashiness, and low-flow duration. Other natural and human features, such as reach-scale channel engineering, geologic setting, and slope, were quantified to identify their possible confounding influences on habitat relations with watershed-scale urbanization indicators. Habitat and geomorphic characteristics were compared to several watershed-scale indicators of urbanization, natural landscape characteristics, and hydrologic metrics by use of correlation analyses and stepwise linear regression. Habitat and geomorphic characteristics were related to percentages of impervious surfaces only in some metropolitan areas and

Geomorphic Classification and Assessment of Channel Dynamics in the Missouri National Recreational River, South Dakota and Nebraska

USGS Publications Warehouse

Elliott, Caroline M.; Jacobson, Robert B.

2006-01-01

A multiscale geomorphic classification was established for the 39-mile, 59-mile, and adjacent segments of the Missouri National Recreational River administered by the National Park Service in South Dakota and Nebraska. The objective of the classification was to define naturally occurring clusters of geomorphic characteristics that would be indicative of discrete sets of geomorphic processes, with the intent that such a classification would be useful in river-management and rehabilitation decisions. The statistical classification was based on geomorphic characteristics of the river collected from 1999 orthophotography and the persistence of classified units was evaluated by comparison with similar datasets for 2003 and 2004 and by evaluating variation of bank erosion rates by geomorphic class. Changes in channel location and form were also explored using imagery and maps from 1993-2004, 1941 and 1894. The multivariate classification identified a hierarchy of naturally occurring clusters of reach-scale geomorphic characteristics. The simplest level of the hierarchy divides the river from segments into discrete reaches characterized by single and multithread channels and additional hierarchical levels established 4-part and 10-part classifications. The classification system presents a physical framework that can be applied to prioritization and design of bank stabilization projects, design of habitat rehabilitation projects, and stratification of monitoring and assessment sampling programs.

Geomorphic processes affecting meadow ecosystems [chapter 3

Treesearch

Jerry R. Miller; Dru Germanoski; Mark L. Lord

2011-01-01

Three geomorphic processes are of primary concern with respect to the current and future state of wet meadow ecosystems: channel incision, avulsion (the abrupt movement of the channel to a new location on the valley floor), and gully formation. Gully formation often is accompanied by upvalley headcut migration and a phenomenon referred to as "groundwater sapping...

Natural and human forcing in recent geomorphic change; case studies in the Rio de la Plata basin.

PubMed

Bonachea, Jaime; Bruschi, Viola M; Hurtado, Martín A; Forte, Luis M; da Silva, Mario; Etcheverry, Ricardo; Cavallotto, José L; Dantas, Marcilene F; Pejon, Osni J; Zuquette, Lázaro V; Bezerra, Maria Angélica de O; Remondo, Juan; Rivas, Victoria; Gómez-Arozamena, José; Fernández, Gema; Cendrero, Antonio

2010-06-01

An analysis of geomorphic system's response to change in human and natural drivers in some areas within the Río de la Plata basin is presented. The aim is to determine whether an acceleration of geomorphic processes has taken place in recent years and, if so, to what extent it is due to natural (climate) or human (land-use) drivers. Study areas of different size, socio-economic and geomorphic conditions have been selected: the Río de la Plata estuary and three sub-basins within its watershed. Sediment cores were extracted and dated ((210)Pb) to determine sedimentation rates since the end of the 19th century. Rates were compared with time series on rainfall as well as human drivers such as population, GDP, livestock load, crop area, energy consumption or cement consumption, all of them related to human capacity to disturb land surface. Data on river discharge were also gathered. Results obtained indicate that sedimentation rates during the last century have remained essentially constant in a remote Andean basin, whereas they show important increases in the other two, particularly one located by the São Paulo metropolitan area. Rates in the estuary are somewhere in between. It appears that there is an intensification of denudation/sedimentation processes within the basin. Rainfall remained stable or varied very slightly during the period analysed and does not seem to explain increases of sedimentation rates observed. Human drivers, particularly those more directly related to capacity to disturb land surface (GDP, energy or cement consumption) show variations that suggest human forcing is a more likely explanation for the observed change in geomorphic processes. It appears that a marked increase in denudation, of a "technological" nature, is taking place in this basin and leading to an acceleration of sediment supply. This is coherent with similar increases observed in other regions. Copyright (c) 2010 Elsevier B.V. All rights reserved.

Extreme Changes in Stream Geomorphic Conditions induced by Fluvial Scour in Bridges

NASA Astrophysics Data System (ADS)

Özcan, O.; Ozcan, O.

2016-12-01

The numerous complexities associated with bridge scour have caused scour to be one of the most active topics of stream geomorphic research. The assessment of local scouring mechanism around bridge piers provides information for decision-making regarding the pile footing design, predicting the safety of bridges under critical scoured conditions, and as a result, may help prevent unnecessary loses. In the study, bridge design plans and HEC-RAS modeling were used for the assessment of changes in stream geomorphic conditions. The derived fluvial scour depths were compared with the field measurements and the empirical formula which is based on stream flow discharge rate, streambed condition and shape of river. Preliminary results revealed that bridge damage resulting from the flood event in 2003 induced substantial scour around bridge piles. Afterwards, significant stream bed change was observed under the influence of fluvial scour in another flood occurred in 2009. Consequently, geomorphic conditions of the stream bed should be considered in the structural design of the bridges.

Active tectonic deformation along rejuvenated faults in tropical Borneo: Inferences obtained from tectono-geomorphic evaluation

NASA Astrophysics Data System (ADS)

Mathew, Manoj Joseph; Menier, David; Siddiqui, Numair; Kumar, Shashi Gaurav; Authemayou, Christine

2016-08-01

The island of Borneo is enveloped by tropical rainforests and hostile terrain characterized by high denudation rates. Owing to such conditions, studies pertaining to neotectonics and consequent geomorphic expressions with regard to surface processes and landscape evolution are inadequately constrained. Here we demonstrate the first systematic tectono-geomorphic evaluation of north Borneo through quantitative and qualitative morphotectonic analysis at sub-catchment scale, for two large drainage basins located in Sarawak: the Rajang and Baram basins. The extraction of morphometric parameters utilizing digital elevation models arranged within a GIS environment focuses on hypsometric curve analysis, distribution of hypsometric integrals through spatial autocorrelation statistics, relative uplift values, the asymmetry factor and the normalized channel steepness index. Hypsometric analysis suggests a young topography adjusting to changes in tectonic boundary conditions. Autocorrelation statistics show clusters of high values of hypsometric integrals as prominent hotspots that are associated with less eroded, young topography situated in the fold and thrust belts of the Interior Highlands of Borneo. High channel steepness and gradients (> 200 m0.9) are observed in zones corresponding to the hotspots. Relative uplift values reveal the presence of tectonically uplifted blocks together with relatively subsided or lesser uplifted zones along known faults. Sub-catchments of both basins display asymmetry indicating tectonic tilting. Stream longitudinal profiles demonstrate the presence of anomalies in the form of knickzones without apparent lithological controls along their channel reaches. Surfaces represented by cold spots of low HI values and low channel gradients observed in the high elevation headwaters of both basins are linked to isolated erosional planation surfaces that could be remnants of piracy processes. The implication of our results is that Borneo experiences

Comparing long-term geomorphic model outcomes with sediment archives highlights the need for high-resolution Holocene land cover reconstructions

NASA Astrophysics Data System (ADS)

De Brue, Hanne; Verstraeten, Gert

2013-04-01

During the last decade, several global land cover reconstructions have been produced that enable to quantify human impact on the landscape since the introduction of agriculture. Application of these land cover maps in geomorphic models potentially allows to estimate the anthropogenic impact on sediment fluxes and thus to reconstruct changes in landscape morphology through time. However, current land cover reconstructions face some drawbacks. First of all, their low spatial resolution (i.e. 5 arc-minutes at best) questions their use in geomorphic models, as sub-catchment vegetation patterns play an important role in sediment dynamics. Existing global land cover reconstructions also do not differentiate the typology of human impact (cropland, grazing land, disturbed forests), although the susceptibility of different anthropogenic land uses towards erosion varies greatly. Finally, the various land cover reconstructions differ significantly regarding the estimated intensity of human impact for the preindustrial period. In this study, we assessed the performance of a spatially distributed erosion and sediment redistribution model that operates at high resolution (100 m) to the quality and spatial resolution of input land cover maps. This was done through a comparison of two sets of model runs. Firstly, low-resolution land cover (expressed as percentage of non-natural vegetation) maps were resampled to a spatial resolution of 100 m without differentiation of non-natural vegetation types. For the second set of model runs, estimated non-natural vegetation was differentiated in areas of cropland and grassland, and spatially allocated to a high-resolution grid (100 m) using a logistic model that relates contemporary land cover classes to slope, soil characteristics, landforms and distance to rivers. For both land cover maps, different scenarios for the ratio between cropland and grassland were simulated. Analyses were performed for several time periods throughout the

Challenges in Higher Education Research: The Use of Quantitative Tools in Comparative Analyses

ERIC Educational Resources Information Center

Reale, Emanuela

2014-01-01

Despite the value of the comparative perspective for the study of higher education is widely recognised, there is little consensus about the specific methodological approaches. Quantitative tools outlined their relevance for addressing comparative analyses since they are supposed to reducing the complexity, finding out and graduating similarities…

SOC in Different Land Use Types: does Geomorphic Position Matter?

NASA Astrophysics Data System (ADS)

Hu, Y.; Sun, Q.; Wang, R.; Wang, Z.; Guo, S.

2016-12-01

Substantial research has been devoted to land use conversion induced changes of soil organic carbon (SOC) and total nitrogen (TN). However, most of the studies were based on local field plots, featuring single predominant landform (ex. rolling topography in Denmark, or Great Plain in the US). For regions integrated from complex landforms such as the Chinese Loess Plateau where tableland, sloping land and gullies are closely networked and each collectively covers a third of the area, the effects of land use changes to SOC and TN could spatially differ among geomorphic positions. So far, local farming management and policies on the Loess Plateau have often been guided by reports from single landform. To fully understand the potential effects of land use conversions to regional C and N cycling, a systematic investigation is highly in need to identify the relative contributions from different geomorphic positions. In this study on the Chinese Loess Plateau, soil profiles deep to 200 cm on three geomorphic positions (tableland, sloping land and gullies) were investigated, each having four types of land use (cropland, orchard, grassland, and woodland). The SOC and total N were measured and compared every layer of 20 cm. Our results show that: 1) the SOC stocks and TN in the surface soil (0-20 cm) was most enriched in downslope gullies and least stored in the summit tableland, demonstrating the erosional redistribution of SOC and TN along hillslopes. 2) After converting from cropland to grassland or woodland, the SOC stocks and TN in soil layer < 60 cm were significantly increased by 17-57% and 40-49%, demonstrating the benefits of land use conversion on SOC sequestration and N cycling. 3) More specifically, such positive increase of SOC stocks was more pronounced in the gullies than on the sloping land. 4) While the SOC stocks and TN in deep layers > 60 cm were more enriched on the tableland, the effects of land use conversions did not differ among the three geomorphic

Geomorphic mapping to support river restoration on the Trinity River downstream from Lewiston Dam, California, 1980-2011

USGS Publications Warehouse

Curtis, Jennifer A.; Guerrero, Timothy M.

2015-01-01

Historic land use, dam construction, water storage, and flow diversions in the Trinity River watershed have resulted in downstream geomorphic change, loss of salmonid habitat, and declines in salmonid populations. The USGS in cooperation with the Trinity River Restoration Program, a multi-agency partnership tasked with implementing federally mandated restoration, completed a geomorphic change assessment to inform the planning process for future restoration work. This report documents an ARCMAP geodatabase (v.10.0) containing geomorphic features digitized from a series of rectified orthophotographs (http://dx.doi.org/10.5066/F7TT4P04). Upland, riparian, and channel features were digitized from six available base images (1980, 1997, 2001, 2006, 2009, and 2011). This report describes the structure of the geodatabase and the methods used to delineate individual geomorphic features.

Scale-dependent geomorphic responses to active restoration and implications for cutthroat trout

NASA Astrophysics Data System (ADS)

Salant, N.; Miller, S. W.

2009-12-01

The predominant goal of instream habitat restoration is to increase the diversity, density and/or biomass of aquatic organisms through enhanced physical heterogeneity and increased food availability. In physically homogenized systems, habitat restoration is most commonly achieved at the reach-scale through the addition of structures or channel reconfiguration. Despite the completion of over 6,000 restoration projects in the United States, studies of fish responses to habitat restoration have largely produced equivocal results. Paradoxically, restoration monitoring overwhelmingly focuses on fish response without understanding how these responses link to the physical variables being altered and the scale at which geomorphic changes occur. Our study investigates whether instream habitat restoration affects geomorphic conditions at spatial scales relevant to the organism of interest (i.e. the spatial scale of the variables limiting to that organism). We measure the effects of active restoration on geomorphic metrics at three spatial scales (local, unit, and reach) using a before-after-control-impact design in a historically disturbed and heavily managed cutthroat trout stream. Observed trout habitat preferences (for spawning and juvenile/adult residence) are used to identify the limiting physical variables and are compared to the scale of spatially explicit geomorphic responses. Four reaches representing three different stages of restoration (before, one month and one year after) are surveyed for local-scale physical conditions, unit- and reach-scale morphology, resident fish use, and redd locations. Local-scale physical metrics include depth, nearbed and average velocity, overhead cover, particle size, and water quality metrics. Point measurements stratified by morphological unit are used to determine physical variability among unit types. Habitat complexity and availability are assessed at the reach-scale from topographic surveys and unit maps. Our multi

Recycling and Ambivalence: Quantitative and Qualitative Analyses of Household Recycling among Young Adults

ERIC Educational Resources Information Center

Ojala, Maria

2008-01-01

Theories about ambivalence, as well as quantitative and qualitative empirical approaches, are applied to obtain an understanding of recycling among young adults. A questionnaire was mailed to 422 Swedish young people. Regression analyses showed that a mix of negative emotions (worry) and positive emotions (hope and joy) about the environmental…

Diatom-inferred hydrological changes and Holocene geomorphic transitioning of Africa's largest estuarine system, Lake St Lucia

NASA Astrophysics Data System (ADS)

Gomes, M.; Humphries, M. S.; Kirsten, K. L.; Green, A. N.; Finch, J. M.; de Lecea, A. M.

2017-06-01

The diverse lagoons and coastal lakes along the east coast of South Africa occupy incised valleys that were flooded during the rise and subsequent stabilisation of relative sea-level during the Holocene. Sedimentary deposits contained within these waterbodies provide an opportunity to investigate complex hydrological and sedimentological processes, and examine sea-level controls governing system geomorphic evolution. In this paper, we combine diatom and sulfur isotope analyses from two sediment cores extracted from the northern sub-basins of Lake St Lucia, a large shallow estuarine lake that is today largely isolated from direct ocean influence behind a Holocene-Pleistocene barrier complex. Analyses allow the reconstruction of hydrological changes associated with the geomorphic development of the system over the mid-to late Holocene. The sedimentary sequences indicate that St Lucia was a shallow, partially enclosed estuary/embayment dominated by strong tidal flows prior to ∼6200 cal. BP. Infilling was initiated when sea-level rise slowed and stabilised around present day levels, resulting in the accumulation of fine-grained sediment behind an emergent proto-barrier. Diatom assemblages, dominated by marine benthic and epiphytic species, reveal a system structured by marine water influx and characterised by marsh and tidal flat habitats until ∼4550 cal. BP. A shift in the biological community at ∼4550 cal. BP is linked to the development of a back-barrier water body that supported a brackish community. Marine planktonics and enrichments in δ34S suggest recurrent, large-scale barrier inundation events during this time, coincident with a mid-Holocene sea-level highstand. Periodic marine incursions associated with episodes of enhanced storminess and overwash remained prevalent until ∼1200 cal. BP, when further barrier construction ultimately isolated the northern basins from the ocean. This study provides the first reconstruction of the palaeohydrological

Human impact on the geomorphic evolution of the HOAL catchment, Lower Austria

NASA Astrophysics Data System (ADS)

Pöppl, Ronald; Kraushaar, Sabine; Strauss, Peter; Fuchs, Markus

2016-04-01

Since the beginning of human settlement extensive land cover and land use changes have induced significant geomorphic landscape changes as water and sediment dynamics have been transformed. The presented project focuses on the reconstruction of Holocene geomorphic landscape evolution and the assessment of recent geomorphic processes in the Northern foothills of the Eastern Alps in Austria - an area intensively agriculturally used since the middle ages and often overlooked in its geomorphic evolution. The study area is a small catchment (ca. 66 ha) which is located in the western part of Lower Austria comprising a land use history as well as environmental settings typical for wide regions across the Northern foothills of the Eastern Alps in Austria. The catchment elevation ranges from 268 to 323 m a.s.l. and has a mean slope angle of 8%. The climate in this region can be characterized as humid. The lithology mainly consists of Tertiary marly to sandy deposits which are superimposed by Quaternary sediments (e.g. loesses). Dominant soil types are Cambisols, Luvisols, and Planosols. Furthermore, the catchment is used as a Hydrological Open Air Laboratory (HOAL) implemented for the long-term research of water-related flow and transport processes in the landscape (http://hoal.hydrology.at). The main objective of this research project is to reconstruct Holocene landscape evolution by analyzing physical parameters of sediment cores taken from colluvial and alluvial sediment archives with additional 14C and OSL dating as well as by the measurement of truncated and covered standardized Luvisol profiles. First results will be presented at the EGU General Assembly 2016.

Warming-induced upslope advance of subalpine forest is severely limited by geomorphic processes

PubMed Central

Macias-Fauria, Marc; Johnson, Edward A.

2013-01-01

Forests are expected to expand into alpine areas because of climate warming, causing land-cover change and fragmentation of alpine habitats. However, this expansion will only occur if the present upper treeline is limited by low-growing season temperatures that reduce plant growth. This temperature limitation has not been quantified at a landscape scale. Here, we show that temperature alone cannot realistically explain high-elevation tree cover over a >100-km2 area in the Canadian Rockies and that geologic/geomorphic processes are fundamental to understanding the heterogeneous landscape distribution of trees. Furthermore, upslope tree advance in a warmer scenario will be severely limited by availability of sites with adequate geomorphic/topographic characteristics. Our results imply that landscape-to-regional scale projections of warming-induced, high-elevation forest advance into alpine areas should not be based solely on temperature-sensitive, site-specific upper-treeline studies but also on geomorphic processes that control tree occurrence at long (centuries/millennia) timescales. PMID:23569221

Legacy effects in linked ecological-soil-geomorphic systems of drylands

USGS Publications Warehouse

Monger, Curtis; Sala, Osvaldo E.; Duniway, Michael C.; Goldfus, Haim; Meir, Isaac A.; Poch, Rosa M.; Throop, Heather L.; Vivoni, Enrique R.

2015-01-01

A legacy effect refers to the impacts that previous conditions have on current processes or properties. Legacies have been recognized by many disciplines, from physiology and ecology to anthropology and geology. Within the context of climatic change, ecological legacies in drylands (eg vegetative patterns) result from feedbacks between biotic, soil, and geomorphic processes that operate at multiple spatial and temporal scales. Legacy effects depend on (1) the magnitude of the original phenomenon, (2) the time since the occurrence of the phenomenon, and (3) the sensitivity of the ecological–soil–geomorphic system to change. Here we present a conceptual framework for legacy effects at short-term (days to months), medium-term (years to decades), and long-term (centuries to millennia) timescales, which reveals the ubiquity of such effects in drylands across research disciplines.

Global earthquake casualties due to secondary effects: A quantitative analysis for improving rapid loss analyses

USGS Publications Warehouse

Marano, K.D.; Wald, D.J.; Allen, T.I.

2010-01-01

This study presents a quantitative and geospatial description of global losses due to earthquake-induced secondary effects, including landslide, liquefaction, tsunami, and fire for events during the past 40 years. These processes are of great importance to the US Geological Survey's (USGS) Prompt Assessment of Global Earthquakes for Response (PAGER) system, which is currently being developed to deliver rapid earthquake impact and loss assessments following large/significant global earthquakes. An important question is how dominant are losses due to secondary effects (and under what conditions, and in which regions)? Thus, which of these effects should receive higher priority research efforts in order to enhance PAGER's overall assessment of earthquakes losses and alerting for the likelihood of secondary impacts? We find that while 21.5% of fatal earthquakes have deaths due to secondary (non-shaking) causes, only rarely are secondary effects the main cause of fatalities. The recent 2004 Great Sumatra-Andaman Islands earthquake is a notable exception, with extraordinary losses due to tsunami. The potential for secondary hazards varies greatly, and systematically, due to regional geologic and geomorphic conditions. Based on our findings, we have built country-specific disclaimers for PAGER that address potential for each hazard (Earle et al., Proceedings of the 14th World Conference of the Earthquake Engineering, Beijing, China, 2008). We will now focus on ways to model casualties from secondary effects based on their relative importance as well as their general predictability. ?? Springer Science+Business Media B.V. 2009.

Geomorphic evidence for ancient seas on Mars

NASA Technical Reports Server (NTRS)

Parker, Timothy J.; Schneeberger, Dale M.; Pieri, David C.; Saunders, R. Stephen

1987-01-01

Geomorphic evidence is presented for ancient seas on Mars. Several features, similar to terrestrial lacustrine and coastal features, were identified along the northern plains periphery from Viking images. The nature of these features argues for formation in a predominantly liquid, shallow body of standing water. Such a shallow sea would require either relatively rapid development of shoreline morphologies or a warmer than present climate at the time of outflow channel formation.

Wildfire in the Critical Zone: Pyro-Geomorphic Feedbacks in Upland Forests

NASA Astrophysics Data System (ADS)

Sheridan, G. J.; Inbar, A.; Metzen, D.; Van der Sant, R.; Lane, P. N. J.; Nyman, P.

2017-12-01

Wildfire often triggers a dramatic geomorphic response, with erosion rates several orders of magnitude greater than background rates. The fact that wildfire is linked to increased soil erosion is well established, but could it also work the other way around? Is it possible that, over time, soil erosion could lead to an increase in wildfire? The proposed mechanism for this is a potential positive feedback between post-fire soil erosion, soil depth, and forest flammability. More fire-related erosion may, over time, lead to less soil water holding capacity, more open vegetation with drier fuels, more fire, and in turn more fire related erosion. These pyro-geomorphic feedbacks may help explain the co-evolved soil-vegetation-fire systems that are observed in the landscape. More broadly, the concept of "wildfire in the critical zone", with a greater emphasis on the interactions between fire, vegetation, hydrology, and geomorphology, may help us understand and predict the trajectory of change as the vegetation-soil-fire system responds and adjusts to the new climate forcing. This presentation will combine an extensive soil, vegetation, and post fire erosion experimental dataset, with conceptual and numerical modelling, to evaluate the significance of the potential pyro-geomorphic feedbacks described above.

Geomorphic predictors of riparian vegetation in small mountain watersheds

Treesearch

Blake M. Engelhardt; Jeanne C. Chambers; Peter J. Weisberg

2015-01-01

Hydrogeomorphic processes operating at watershed, process zone and site scales influence the distribution of riparian vegetation. However, most studies examining the relationships between hydrogeomorphic processes and riparian vegetation are conducted at site scales. We quantified the relative importance of watershed, process zone and site geomorphic characteristics...

The “unreasonable effectiveness” of stratigraphic and geomorphic experiments

NASA Astrophysics Data System (ADS)

Paola, Chris; Straub, Kyle; Mohrig, David; Reinhardt, Liam

2009-12-01

-biotic interactions, cohesive effects, stochastic processes, the interplay of structural and geomorphic self-organization, extraction of quantitative process information from landscape and stratigraphic records, and closer interaction between experimentation and theory.

Riparian vegetation recovery patterns following stream channelization: a geomorphic perspective

USGS Publications Warehouse

Hupp, C.R.

1992-01-01

Hundreds of kilometres of West Tennessee streams have been channelized since the turn of the century. After a stream is straightened, dredged, or cleared, basin-wide ecologic, hydrologic, and geomorphic processes bring about an integrated, characteristic recovery sequence. The rapid pace of channel responses to channelization provides an opportunity to document and interpret vegetation recovery patterns relative to otherwise long-term, concomitant evolution of river geomorphology. The linkage of channel bed aggradation, woody vegetation establishment, and bank accretion all lead to recovery of the channel. Pioneer species are hardy and fast growing, and can tolerate moderate amounts of slope instability and sediment deposition; these species include river birch (Betula nigra), black willow (Salix nigra), boxelder (Acer negundo), and silver maple (Acer saccharinum). High stem densities and root-mass development appear to enhance bank stability. Tree-ring analyses suggest that on average 65 yr may be required for recovery after channelization. -from Author

Effects of dams and geomorphic context on riparian forests of the Elwha River, Washington

USGS Publications Warehouse

Shafroth, Patrick B.; Perry, Laura G; Rose, Chanoane A; Braatne, Jeffrey H

2016-01-01

Understanding how dams affect the shifting habitat mosaic of river bottomlands is key for protecting the many ecological functions and related goods and services that riparian forests provide and for informing approaches to riparian ecosystem restoration. We examined the downstream effects of two large dams on patterns of forest composition, structure, and dynamics within different geomorphic contexts and compared them to upstream reference conditions along the Elwha River, Washington, USA. Patterns of riparian vegetation in river segments downstream of the dams were driven largely by channel and bottomland geomorphic responses to a dramatically reduced sediment supply. The river segment upstream of both dams was the most geomorphically dynamic, whereas the segment between the dams was the least dynamic due to substantial channel armoring, and the segment downstream of both dams was intermediate due to some local sediment supply. These geomorphic differences were linked to altered characteristics of the shifting habitat mosaic, including older forest age structure and fewer young Populus balsamifera subsp. trichocarpa stands in the relatively static segment between the dams compared to more extensive early-successional forests (dominated by Alnus rubra and Salix spp.) and pioneer seedling recruitment upstream of the dams. Species composition of later-successional forest communities varied among river segments as well, with greater Pseudotsuga menziesii and Tsuga heterophylla abundance upstream of both dams, Acer spp. abundance between the dams, and P. balsamifera subsp. trichocarpa and Thuja plicata abundance below both dams. Riparian forest responses to the recent removal of the two dams on the Elwha River will depend largely on channel and geomorphic adjustments to the release, transport, and deposition of the large volume of sediment formerly stored in the reservoirs, together with changes in large wood dynamics.

Cold rock coast geomorphology: A quantitative analysis of rock coast processes in Hornsund.

NASA Astrophysics Data System (ADS)

Lim, Michael; Strzelecki, Matt; Kasprzak, Marek; Jaskolski, Marek; Pawlowski, Lukasz; Swirad, Zuzanna; Bell, Heather; Migon, Piotr

2017-04-01

Many arctic coastal systems are experiencing altered thermal and hydrological regimes. Of particular note within the High Arctic is Svalbard, a region undergoing a distinct and sustained rise in mean annual temperatures. Hornsund, at the southern tip of the Svalbard archipelago, is situated at the northern extreme of the North Atlantic current and as such provides a site of unique climate sensitivity with a concentration of geomorphic processes. There is a paucity of studies achieving sufficient resolution to account for geomorphic behaviour and over timescales that allow climatic conditioning to be considered. This research utilises high resolution multiscale surface monitoring and characterisation to quantify and model both contemporary and relic cliff responses in order to revisit one of the first quantitative studies, undertaken almost sixty years ago, on the rates and intensities of rock coast change. The fragmentation and failure in contemporary coastal cliff responses reflects a decrease in the overall rates of change relative to historic rates during a period that has seen the loss of an icefoot that regularly lasted until late summer and a transition to open water coastal dynamics. To investigate the drivers of rock degradation and failure, thermal analyses that characterise both spatial and temporal patterns across and within the rock coast have been used to indicate a potential shift in process activity zones. The significance of localised influences such as storm influences, iceberg influxes and topographic shading highlights some considerations for the development of broader scale models of rock coast evolution.

Transpressional tectonics in the Marrakech High Atlas: Insight by the geomorphic evolution of drainage basins

NASA Astrophysics Data System (ADS)

Delcaillau, Bernard; Amrhar, Mostafa; Namous, Mustapha; Laville, Edgard; Pedoja, Kevin; Dugué, Olivier

2011-11-01

The Ouzzelarh Massif extends across the Marrakech High Atlas (MHA) and forms the highest elevated mountain belt. To better understand the evolution of collision-related topography, we present the results of a geomorphological study in which elevation changes generated by reactivated pre-Alpine (Variscan and Triassic-Jurassic) faults drive a landscape evolution model. We aim to evaluate the relationship between the geometry of the drainage network and the main fault systems in this region. New insight into geomorphological changes in drainage patterns and related landforms is based on geological fieldwork combined with DEM analysis. To quantitatively measure landscape features we used several classical geomorphic indices (spacing ratio, hypsometric curves and integral, stream frequency drainage, stream length-gradient). The Ouzzelarh Massif is bounded to the north by the Tizi N'Test Fault Zone (TTFZ) and to the south by the Sour Fault Zone (SFZ). These faults delimit a pop-up structure. By using the above geomorphic parameters, we ascertained that the Ouzzelarh Massif is affected by a high spatial variability of uplift. The actual landscape of the Ouzzelarh Massif reveals remnants of an uplifted ancient erosional surface and the heterogeneity of exposed rocks in the range explaining the possibility that the topographic asymmetry between north and south flanks is due to differences in lithology-controlled resistance to erosion. Drainage, topography and fault pattern all concur to show uplifted rhomboidal-shaped blocks. It exhibits high stream frequency drainage and uplift in separate tectonically-uplifted blocks such as Jebel Toubkal which is characterized by asymmetric drainage basins.

Geomorphic process from topographic form: automating the interpretation of repeat survey data in river valleys

USGS Publications Warehouse

Kasprak, Alan; Caster, Joshua J.; Bangen, Sara G.; Sankey, Joel B.

2017-01-01

The ability to quantify the processes driving geomorphic change in river valley margins is vital to geomorphologists seeking to understand the relative role of transport mechanisms (e.g. fluvial, aeolian, and hillslope processes) in landscape dynamics. High-resolution, repeat topographic data are becoming readily available to geomorphologists. By contrasting digital elevation models derived from repeat surveys, the transport processes driving topographic changes can be inferred, a method termed ‘mechanistic segregation.’ Unfortunately, mechanistic segregation largely relies on subjective and time consuming manual classification, which has implications both for its reproducibility and the practical scale of its application. Here we present a novel computational workflow for the mechanistic segregation of geomorphic transport processes in geospatial datasets. We apply the workflow to seven sites along the Colorado River in the Grand Canyon, where geomorphic transport is driven by a diverse suite of mechanisms. The workflow performs well when compared to field observations, with an overall predictive accuracy of 84% across 113 validation points. The approach most accurately predicts changes due to fluvial processes (100% accuracy) and aeolian processes (96%), with reduced accuracy in predictions of alluvial and colluvial processes (64% and 73%, respectively). Our workflow is designed to be applicable to a diversity of river systems and will likely provide a rapid and objective understanding of the processes driving geomorphic change at the reach and network scales. We anticipate that such an understanding will allow insight into the response of geomorphic transport processes to external forcings, such as shifts in climate, land use, or river regulation, with implications for process-based river management and restoration.

Quantitative analyses of cell behaviors underlying notochord formation and extension in mouse embryos.

PubMed

Sausedo, R A; Schoenwolf, G C

1994-05-01

Formation and extension of the notochord (i.e., notogenesis) is one of the earliest and most obvious events of axis development in vertebrate embryos. In birds and mammals, prospective notochord cells arise from Hensen's node and come to lie beneath the midline of the neural plate. Throughout the period of neurulation, the notochord retains its close spatial relationship with the developing neural tube and undergoes rapid extension in concert with the overlying neuroepithelium. In the present study, we examined notochord development quantitatively in mouse embryos. C57BL/6 mouse embryos were collected at 8, 8.5, 9, 9.5, and 10 days of gestation. They were then embedded in paraffin and sectioned transversely. Serial sections from 21 embryos were stained with Schiff's reagent according to the Feulgen-Rossenbeck procedure and used for quantitative analyses of notochord extension. Quantitative analyses revealed that extension of the notochord involves cell division within the notochord proper and cell rearrangement within the notochordal plate (the immediate precursor of the notochord). In addition, extension of the notochord involves cell accretion, that is, the addition of cells to the notochord's caudal end, a process that involves considerable cell rearrangement at the notochordal plate-node interface. Extension of the mouse notochord occurs similarly to that described previously for birds (Sausedo and Schoenwolf, 1993 Anat. Rec. 237:58-70). That is, in both birds (i.e., quail and chick) and mouse embryos, notochord extension involves cell division, cell rearrangement, and cell accretion. Thus higher vertebrates utilize similar morphogenetic movements to effect notogenesis.

Meteorological Trigger Conditions for Different Geomorphic Processes in Steep Mountain Channels in the Austrian Alps

NASA Astrophysics Data System (ADS)

Kaitna, R.; Braun, M.

2016-12-01

Steep mountain channels episodically can experience very different geomorphic processes, ranging from flash floods, intensive bedload transport, debris floods, and debris flows. Rainfall-related trigger conditions and geomorphic disposition for each of these processes to occur, as well as conditions leading to one process and not to the other, are not well understood. In this contribution, we analyze triggering rainfalls for all documented events in the Eastern (Austrian) Alps on a daily and sub-daily basis. The analysis with daily rainfall data covers more than 6640 events between 1901 and 2014 and the analysis based on sub-daily (10 min interval) rainfall data includes around 950 events between 1992 and 2014. Of the four investigated event types, we find that debris flows are typically associated with the least cumulative rainfall, while intensive bedload transport as well as torrential floods occur when there is a substantial amount of cumulative rainfall. Debris floods are occurring on average with cumulative rainfall in a range between the aforementioned processes. Comparison of historical data shows, that about 90% of events are triggered with a combination of extreme rainfall and temperature. Bayesian analysis reveals that a high degree of geomorphic events is associated with very short rainfall durations that cannot be resolved with daily rainfall data. A comparison of both datasets shows that subdaily data gives more accurate results. Additionally, we find a high degree of regional differences, e.g. between regions north and south of the Alpine chain or high or low Alpine regions. There is indication that especially debris flows need less total rainfall amount when occurring in regions with a high relief energy than in less steep environments. The limitation of our analysis is mainly due to the distance between the locations of event triggering and rainfall measurement and the definition of rainfall events for the Bayesian analysis. In a next step, we will

Quantitative analyses for elucidating mechanisms of cell fate commitment in the mouse blastocyst

NASA Astrophysics Data System (ADS)

Saiz, Néstor; Kang, Minjung; Puliafito, Alberto; Schrode, Nadine; Xenopoulos, Panagiotis; Lou, Xinghua; Di Talia, Stefano; Hadjantonakis, Anna-Katerina

2015-03-01

In recent years we have witnessed a shift from qualitative image analysis towards higher resolution, quantitative analyses of imaging data in developmental biology. This shift has been fueled by technological advances in both imaging and analysis software. We have recently developed a tool for accurate, semi-automated nuclear segmentation of imaging data from early mouse embryos and embryonic stem cells. We have applied this software to the study of the first lineage decisions that take place during mouse development and established analysis pipelines for both static and time-lapse imaging experiments. In this paper we summarize the conclusions from these studies to illustrate how quantitative, single-cell level analysis of imaging data can unveil biological processes that cannot be revealed by traditional qualitative studies.

EFFECTS OF GEOMORPHIC PROCESSES AND HYDROLOGIC REGIMES ON RIPARIAN VEGETATION

EPA Science Inventory

In this chapter, the relationships among riparian vegetation and geomorphic and hydrologic processes in central Great Basin watersheds are evaluated over a range of scales. These relationships are examined through a series of case studies that have been conducted by the Great Ba...

Scaling Considerations Related to Interactions of Hydrologics, Pedologic and Geomorphic Processes

EPA Science Inventory

Hydrologic, pedologic, and geomorphic processes are strongly interrelated and affected by scale. These interactions exert important controls on runoff generation, preferential flow, contaminant transport, surface erosion, and mass wasting. Measurement of hydraulic conductivity (K...

Log Distribution, Persistence, and Geomorphic Function in Streams and Rivers, in the Northeastern U.S.

NASA Astrophysics Data System (ADS)

St Pierre, L.; Burchsted, D.; Warren, D.

2015-12-01

Large wood provides critical ecosystem services such as fish habitat, temperature regulation and bank stabilization. In the northeastern U.S., the distribution of large wood is documented; however, there is little understanding of the movement, longevity and geomorphic function. This research examines the hypothesis that tree species control the persistence and geomorphic function of instream wood in the Appalachian region of the northeastern U.S. To do this, we assessed size, location, and species of logs in New Hampshire rivers, including locations in the White Mountain National Forest (WMNF) where these data were collected ten years ago. We expanded the previous dataset to include assessment of geomorphic function, including creation of diversion channels, pool formation, and sediment storage, among others. We also added new sites in the WMNF and sites on a large rural river in southwestern NH to increase the range of geomorphic variables to now include: confined and unconfined channels; 1st to 4th order streams; low to high gradient; meandering, multithreaded, and straight channels; and land use such as historic logging, modern agriculture, and post-agricultural abandonment. At each study site, we located all large logs (>10cm diameter, > 1m length) and log jams (>3 accumulated logs that provide a geomorphic function) along 100m-700m reaches. We marked each identified log with a numbered tag and recorded species, diameter, length, orientation, GPS location, tag number, and photographs. We assessed function and accumulation, decay, stability, and source classes for each log. Along each reach we measured riparian forest composition and structure and channel width. Preliminary analysis suggests that tree species significantly affects the function of logs: yellow birch and American sycamore are highly represented. Additionally, geomorphic setting also plays a primary role, where unconfined reaches have large logs that provide important functions; those functions

Geomorphic controls on floodplain organic carbon storage in sediment along five rivers in interior Alaska

NASA Astrophysics Data System (ADS)

Lininger, K.; Wohl, E.; Rose, J. R.

2016-12-01

High latitude permafrost regions contain large amounts of organic carbon (OC) in the subsurface, but little work has quantified OC storage in floodplain sediment in the high latitudes. Floodplains influence the export of OC to the ocean by temporarily storing OC at timescales of 101 to 103 years. To fully understand terrestrial carbon cycling, the storage and residence time of OC in floodplains, and the geomorphic controls on OC storage, must be taken into account. Small-scale spatial variations in OC storage within floodplains likely reflect geomorphic processes of deposition and floodplain development. We present results of floodplain OC storage and residence time in sediment along 5 rivers in the Yukon Flats National Wildlife Refuge in interior Alaska, a region with discontinuous permafrost. We collected sediment samples within the active layer along tributaries to the Yukon River and the mainstem Yukon River and analyzed the sediment samples for OC content. We classified sample locations by geomorphic type (filled secondary channels, levees, point bars) and vegetation type (herbaceous, deciduous/shrub, white spruce, and black spruce wetlands), and found that both geomorphology and vegetation influence OC concentration and OC mass per area. Preliminary results suggest that filled secondary channels contain more OC per area compared to other geomorphic types. We present results of radiocarbon dates from river cutbanks associated with our sampling sites, which give a maximum age for residence times of OC in sediment before erosion and transport. The radiocarbon dates also provide estimates of long-term OC accretion within the Yukon Flats floodplains. Small-scale variations within floodplains as a result of floodplain depositional processes and vegetation communities shed light on the geomorphic controls on OC storage. This work will help constrain the spatial variation in OC storage and OC residence time across the landscape in a region experiencing rapid climate

Integrating Geomorphic and Social Dynamics in the Analysis of Anthropogenic Landforms: Examining Landscape Evolution of Terrain Modified by Agricultural Terracing

NASA Astrophysics Data System (ADS)

Glaubius, J.; Maerker, M.

2016-12-01

Anthropogenic landforms, such as mines and agricultural terraces, are impacted by both geomorphic and social processes at varying intensities through time. In the case of agricultural terraces, decisions regarding terrace maintenance are intertwined with land use, such as when terraced fields are abandoned. Furthermore, terrace maintenance and land use decisions, either jointly or separately, may be in response to geomorphic processes, as well as geomorphic feedbacks. Previous studies of these complex geomorphic systems considered agricultural terraces as static features or analyzed only the geomorphic response to landowner decisions. Such research is appropriate for short-term or binary landscape scenarios (e.g. the impact of maintained vs. abandoned terraces), but the complexities inherent in these socio-natural systems requires an approach that includes both social and geomorphic processes. This project analyzes feedbacks and emergent properties in terraced systems by implementing a coupled landscape evolution model (LEM) and agent-based model (ABM) using the Landlab and Mesa modeling libraries. In the ABM portion of the model, agricultural terraces are conceptualized using a life-cycle stages schema and implemented using Markov Decision Processes to simulate the changing geomorphic impact of terracing based on human decisions. This paper examines the applicability of this approach by comparing results from a LEM-only model against the coupled LEM-ABM model for a terraced region. Model results are compared by quantify and spatial patterning of sediment transport. This approach fully captures long-term landscape evolution of terraced terrain that is otherwise lost when the life-cycle of terraces is not considered. The coupled LEM-ABM approach balances both environmental and social processes so that the socio-natural feedbacks in such anthropogenic systems can be disentangled.

Calibration of an estuarine sediment transport model to sediment fluxes as an intermediate step for simulation of geomorphic evolution

USGS Publications Warehouse

Ganju, N.K.; Schoellhamer, D.H.

2009-01-01

Modeling geomorphic evolution in estuaries is necessary to model the fate of legacy contaminants in the bed sediment and the effect of climate change, watershed alterations, sea level rise, construction projects, and restoration efforts. Coupled hydrodynamic and sediment transport models used for this purpose typically are calibrated to water level, currents, and/or suspended-sediment concentrations. However, small errors in these tidal-timescale models can accumulate to cause major errors in geomorphic evolution, which may not be obvious. Here we present an intermediate step towards simulating decadal-timescale geomorphic change: calibration to estimated sediment fluxes (mass/time) at two cross-sections within an estuary. Accurate representation of sediment fluxes gives confidence in representation of sediment supply to and from the estuary during those periods. Several years of sediment flux data are available for the landward and seaward boundaries of Suisun Bay, California, the landward-most embayment of San Francisco Bay. Sediment flux observations suggest that episodic freshwater flows export sediment from Suisun Bay, while gravitational circulation during the dry season imports sediment from seaward sources. The Regional Oceanic Modeling System (ROMS), a three-dimensional coupled hydrodynamic/sediment transport model, was adapted for Suisun Bay, for the purposes of hindcasting 19th and 20th century bathymetric change, and simulating geomorphic response to sea level rise and climatic variability in the 21st century. The sediment transport parameters were calibrated using the sediment flux data from 1997 (a relatively wet year) and 2004 (a relatively dry year). The remaining years of data (1998, 2002, 2003) were used for validation. The model represents the inter-annual and annual sediment flux variability, while net sediment import/export is accurately modeled for three of the five years. The use of sediment flux data for calibrating an estuarine geomorphic

Geomorphic and Ecological Disturbance and Recovery from Two Small Dams and Their Removal

PubMed Central

Tullos, Desirée D.; Finn, Debra S.; Walter, Cara

2014-01-01

Dams are known to impact river channels and ecosystems, both during their lifetime and in their decommissioning. In this study, we applied a before-after-control-impact design associated with two small dam removals to investigate abiotic and biotic recovery trajectories from both the elimination of the press disturbance associated with the presence of dams and the introduction of a pulse disturbance associated with removal of dams. The two case studies represent different geomorphic and ecological conditions that we expected to represent low and high sensitivities to the pulse disturbance of dam removal: the 4 m tall, gravel-filled Brownsville Dam on the wadeable Calapooia River and the 12.5 m tall, sand and gravel-filled Savage Rapids Dam on the largely non-wadeable Rogue River. We evaluated both geomorphic and ecological responses annually for two years post removal, and asked if functional traits of the macroinvertebrate assemblages provided more persistent signals of ecological disturbance than taxonomically defined assemblages over the period of study. Results indicate that: 1) the presence of the dams constituted a strong ecological press disturbance to the near-downstream reaches on both rivers, despite the fact that both rivers passed unregulated flow and sediment during the high flow season; 2) ecological recovery from this press disturbance occurred within the year following the restoration action of dam removal, whereas signals of geomorphic disturbance from the pulse of released sediment persisted two years post-removal, and 3) the strength of the press disturbance and the rapid ecological recovery were detected regardless of whether recovery was assessed by taxonomic or functional assemblages and for both case studies, in spite of their different geomorphic settings. PMID:25233231

Redd Site Selection and Spawning Habitat Use by Fall Chinook Salmon: The Importance of Geomorphic Features in Large Rivers

PubMed

Geist; Dauble

1998-09-01

/ Knowledge of the three-dimensional connectivity between rivers and groundwater within the hyporheic zone can be used to improve the definition of fall chinook salmon (Oncorhynchus tshawytscha) spawning habitat. Information exists on the microhabitat characteristics that define suitable salmon spawning habitat. However, traditional spawning habitat models that use these characteristics to predict available spawning habitat are restricted because they can not account for the heterogeneous nature of rivers. We present a conceptual spawning habitat model for fall chinook salmon that describes how geomorphic features of river channels create hydraulic processes, including hyporheic flows, that influence where salmon spawn in unconstrained reaches of large mainstem alluvial rivers. Two case studies based on empirical data from fall chinook salmon spawning areas in the Hanford Reach of the Columbia River are presented to illustrate important aspects of our conceptual model. We suggest that traditional habitat models and our conceptual model be combined to predict the limits of suitable fall chinook salmon spawning habitat. This approach can incorporate quantitative measures of river channel morphology, including general descriptors of geomorphic features at different spatial scales, in order to understand the processes influencing redd site selection and spawning habitat use. This information is needed in order to protect existing salmon spawning habitat in large rivers, as well as to recover habitat already lost.KEY WORDS: Hyporheic zone; Geomorphology; Spawning habitat; Large rivers; Fall chinook salmon; Habitat management

Quantitative methods for analysing cumulative effects on fish migration success: a review.

PubMed

Johnson, J E; Patterson, D A; Martins, E G; Cooke, S J; Hinch, S G

2012-07-01

It is often recognized, but seldom addressed, that a quantitative assessment of the cumulative effects, both additive and non-additive, of multiple stressors on fish survival would provide a more realistic representation of the factors that influence fish migration. This review presents a compilation of analytical methods applied to a well-studied fish migration, a more general review of quantitative multivariable methods, and a synthesis on how to apply new analytical techniques in fish migration studies. A compilation of adult migration papers from Fraser River sockeye salmon Oncorhynchus nerka revealed a limited number of multivariable methods being applied and the sub-optimal reliance on univariable methods for multivariable problems. The literature review of fisheries science, general biology and medicine identified a large number of alternative methods for dealing with cumulative effects, with a limited number of techniques being used in fish migration studies. An evaluation of the different methods revealed that certain classes of multivariable analyses will probably prove useful in future assessments of cumulative effects on fish migration. This overview and evaluation of quantitative methods gathered from the disparate fields should serve as a primer for anyone seeking to quantify cumulative effects on fish migration survival. © 2012 The Authors. Journal of Fish Biology © 2012 The Fisheries Society of the British Isles.

Geomorphic Investigation of Bakers Bayou Near Lonoke, Arkansas

DTIC Science & Technology

2005-05-01

low-relief hills are known as pimple mounds , prairie mounds , or incorrectly as mima mounds . The geomorphic mystery surrounding these mounds involves...their origin. There is no widely accepted explanation for their origin. Saucier (1994) suggests that pimple mounds are the result of either ant or... termite colonies. More than 20 different theories of origin have been proposed. Noteworthy to this study from a chronological perspective is that

Characterization of geomorphic units in the alluvial valleys and channels of Gulf Coastal Plain rivers in Texas, with examples from the Brazos, Sabine, and Trinity Rivers, 2010

USGS Publications Warehouse

Coffman, David K.; Malstaff, Greg; Heitmuller, Franklin T.

2011-01-01

The U.S. Geological Survey, in cooperation with the Texas Water Development Board, described and characterized examples of geomorphic units within the channels and alluvial valleys of Texas Gulf Coastal Plain rivers using a geomorphic unit classification scale that differentiates geomorphic units on the basis of their location either outside or inside the river channel. The geomorphic properties of a river system determine the distribution and type of potential habitat both within and adjacent to the channel. This report characterizes the geomorphic units contained in the river channels and alluvial valleys of Texas Gulf Coastal Plain rivers in the context of the River Styles framework. This report is intended to help Texas Instream Flow Program practitioners, river managers, ecologists and biologists, and others interested in the geomorphology and the physical processes of the rivers of the Texas Gulf Coastal Plain (1) gain insights into how geomorphic units develop and adjust spatially and temporally, and (2) be able to recognize common geomorphic units from the examples cataloged in this report. Recent aerial imagery (high-resolution digital orthoimagery) collected in 2008 and 2009 were inspected by using geographic information system software to identify representative examples of the types of geomorphic units that occurred in the study area. Geomorphic units outside the channels of Texas Gulf Coastal Plain rivers are called \\"valley geomorphic units\\" in this report. Valley geomorphic units for the Texas Gulf Coastal Plain rivers described in this report are terraces, flood plains, crevasses and crevasse splays, flood-plain depressions, tie channels, tributaries, paleochannels, anabranches, distributaries, natural levees, neck cutoffs, oxbow lakes, and constructed channels. Channel geomorphic units occur in the river channel and are subject to frequent stresses associated with flowing water and sediment transport; they adjust (change) relatively quickly in

Integrating channel form and processes in the Gangetic plains rivers: Implications for geomorphic diversity

NASA Astrophysics Data System (ADS)

Roy, N. G.; Sinha, R.

2018-02-01

Geomorphic diversity at a variety of spatial and temporal scales has been studied in the western Ganga plains (WGP), India, to isolate the dominating factors at each scale that have the potential to cause major geomorphic change. The Ganga River and its major tributaries draining the WGP have been investigated in terms of longitudinal, cross-sectional, and planform morphology to assess the influence of potential controls such as climate, geology, topography, land use, hydrology, and sediment transport. These data were then compared with those from the rivers draining the eastern Ganga plains (EGP) to understand the geomorphic diversity across the Ganga plains and the causal factors. Our investigations suggest that in-channel geomorphic diversity over decadal scale in rivers with low width-to-depth (W/D) ratio is caused by periodic incision/aggradation, but it is driven by channel avulsion in rivers characterized by high W/D ratio. Similarly, planform (reach-scale) parameters such as sinuosity and braid-channel-ratio are influenced by intrinsic factors such as changes in hydrological conditions and morphodynamics (cutoffs, small-scale avulsion) that are in turn impacted by natural and human-induced factors. Finally, we have isolated the climatic and hydrologic effects on the longitudinal profile concavity of alluvial trunk channels in tectonically stable and unstable landscapes. We demonstrate that the rivers flowing through a tectonically stable landscape are graded in nature where higher discharge tends to create more concave longitudinal profiles compared to those in tectonically unstable landscape at 103-year scale.

Geomorphically based predictive mapping of soil thickness in upland watersheds

NASA Astrophysics Data System (ADS)

Pelletier, Jon D.; Rasmussen, Craig

2009-09-01

The hydrologic response of upland watersheds is strongly controlled by soil (regolith) thickness. Despite the need to quantify soil thickness for input into hydrologic models, there is currently no widely used, geomorphically based method for doing so. In this paper we describe and illustrate a new method for predictive mapping of soil thicknesses using high-resolution topographic data, numerical modeling, and field-based calibration. The model framework works directly with input digital elevation model data to predict soil thicknesses assuming a long-term balance between soil production and erosion. Erosion rates in the model are quantified using one of three geomorphically based sediment transport models: nonlinear slope-dependent transport, nonlinear area- and slope-dependent transport, and nonlinear depth- and slope-dependent transport. The model balances soil production and erosion locally to predict a family of solutions corresponding to a range of values of two unconstrained model parameters. A small number of field-based soil thickness measurements can then be used to calibrate the local value of those unconstrained parameters, thereby constraining which solution is applicable at a particular study site. As an illustration, the model is used to predictively map soil thicknesses in two small, ˜0.1 km2, drainage basins in the Marshall Gulch watershed, a semiarid drainage basin in the Santa Catalina Mountains of Pima County, Arizona. Field observations and calibration data indicate that the nonlinear depth- and slope-dependent sediment transport model is the most appropriate transport model for this site. The resulting framework provides a generally applicable, geomorphically based tool for predictive mapping of soil thickness using high-resolution topographic data sets.

Reconstruction of paleo-inlet dynamics using sedimentologic analyses, geomorphic features, and benthic foraminiferal assemblages: former ephemeral inlets of Cedar Island, Virginia, USA

NASA Astrophysics Data System (ADS)

McBride, R.; Wood, E. T.

2017-12-01

Cedar Island, VA is a low-profile, washover-dominated barrier island that has breached at least three times in the past sixty years. Cedar Island Inlet, a former wave-dominated tidal inlet, was open for the following time periods: 1) 1956-1962, 2) 1992-1997, and 3) 1998-2007. Air photos, satellite imagery, and geomorphic features (i.e., relict flood tidal deltas, recurved-spit ridges) record the spatial and temporal extent of the three ephemeral inlets. Based on three sediment vibracores, benthic foraminiferal and sedimentologic analyses offer high resolution insights of inlet dynamics and lifecycle evolution. Four foraminiferal biofacies are completely dominated by Elphidium excavatum (54-100%) and contain unique assemblages of accessory species based on cluster analyses: tidal inlet floor (low abundance estuarine and shelf species; 23% Haynesina germanica); flood tidal delta/inlet fill (high abundance estuarine and shelf species; 2% Buccella frigida, 2% Ammonia parkinsoniana, and 2% Haynesina germanica); high-energy inlet fill (low abundance, low diversity shelf species; 9% Elphidium gunteri); and washover/beach/aeolian (low abundance, predominantly shelf species; 3% Buccella frigida and 3% Ammonia parkinsoniana). The estuarine biofacies is barren of all foraminifera. Grain size trends indicate a first order coarsening-upward succession with second order coarsening- and fining-upwards packages in inlet throat deposits, while a first order fining-upward succession is observed in flood tidal delta deposits with two second order coarsening-upward packages in the proximal flood tidal delta. Contrary to typical wave-dominated tidal inlets that open, migrate laterally in the direction of net longshore transport, and close, the 1998-2007 tidal inlet, and possibly the 1956-1962 inlet, migrated laterally and rotated, whereas the 1992-1997 inlet remained stationary and did not rotate. In the vicinity of the vibracores, preserved deposits are attributed to the 1956-1962 and

Geomorphic tipping points: convenient metaphor or fundamental landscape property?

NASA Astrophysics Data System (ADS)

Lane, Stuart

2016-04-01

In 2000 Malcolm Gladwell published as book that has done much to publicise Tipping Points in society but also in academia. His arguments, re-expressed in a geomorphic sense, have three core elements: (1) a "Law of the Few", where rapid change results from the effects of a relatively restricted number of critical elements, ones that are able to rapidly connect systems together, that are particularly sensitive to an external force, of that are spatially organised in a particular way; (2) a "Stickiness" where an element of the landscape is able to assimilate characteristics which make it progressively more applicable to the "Law of the Few"; and (3), given (1) and (2) a history and a geography that means that the same force can have dramatically different effects, according to where and when it occurs. Expressed in this way, it is not clear that Tipping Points bring much to our understanding in geomorphology that existing concepts (e.g. landscape sensitivity and recovery; cusp-catastrophe theory; non-linear dynamics systems) do not already provide. It may also be all too easy to describe change in geomorphology as involving a Tipping Point: we know that geomorphic processes often involve a non-linear response above a certain critical threshold; we know that landscapes can, after Denys Brunsden, be though of as involving long periods of boredom ("stability") interspersed with brief moments of terror ("change"); but these are not, after Gladwell, sufficient for the term Tipping Point to apply. Following from these issues, this talk will address three themes. First, it will question, through reference to specific examples, notably in high Alpine systems, the extent to which the Tipping Point analogy is truly a property of the world in which we live. Second, it will explore how 'tipping points' become assigned metaphorically, sometimes evolving to the point that they themselves gain agency, that is, shaping the way we interpret landscape rather than vice versa. Third, I

Decadal-timescale estuarine geomorphic change under future scenarios of climate and sediment supply

USGS Publications Warehouse

Ganju, N.K.; Schoellhamer, D.H.

2010-01-01

Future estuarine geomorphic change, in response to climate change, sea-level rise, and watershed sediment supply, may govern ecological function, navigation, and water quality. We estimated geomorphic changes in Suisun Bay, CA, under four scenarios using a tidal-timescale hydrodynamic/sediment transport model. Computational expense and data needs were reduced using the morphological hydrograph concept and the morphological acceleration factor. The four scenarios included (1) present-day conditions; (2) sea-level rise and freshwater flow changes of 2030; (3) sea-level rise and decreased watershed sediment supply of 2030; and (4) sea-level rise, freshwater flow changes, and decreased watershed sediment supply of 2030. Sea-level rise increased water levels thereby reducing wave-induced bottom shear stress and sediment redistribution during the wind-wave season. Decreased watershed sediment supply reduced net deposition within the estuary, while minor changes in freshwater flow timing and magnitude induced the smallest overall effect. In all future scenarios, net deposition in the entire estuary and in the shallowest areas did not keep pace with sea-level rise, suggesting that intertidal and wetland areas may struggle to maintain elevation. Tidal-timescale simulations using future conditions were also used to infer changes in optical depth: though sea-level rise acts to decrease mean light irradiance, decreased suspended-sediment concentrations increase irradiance, yielding small changes in optical depth. The modeling results also assisted with the development of a dimensionless estuarine geomorphic number representing the ratio of potential sediment import forces to sediment export forces; we found the number to be linearly related to relative geomorphic change in Suisun Bay. The methods implemented here are widely applicable to evaluating future scenarios of estuarine change over decadal timescales. ?? The Author(s) 2009.

Modeling In-Stream Hydro-Geomorphic Processes After 2012 Waldo Canyon Fire, Colorado

NASA Astrophysics Data System (ADS)

Nourbakhshbeidokhti, S.; Kinoshita, A. M.; Chin, A.

2016-12-01

Wildfires can have significant impacts on hydrologic and geomorphic processes. Post-fire sediment transport and runoff generation vary by burn severity, precipitation, and vegetation. A need exists to understand these variable relationships and improve parameterization of post-fire hydro-geomorphic models. This research aims to model pre-fire geomorphic and hydrologic processes in Williams Canyon, a watershed burned by the 2012 Waldo Canyon Fire in Colorado. We develop the KINematic Runoff and EROSion (KINEROS) model with Geographical Information System (GIS)-based information, including a Digital Elevation Model, land cover, soil classification, precipitation, and soil burn severity for a local reference watershed that is unburned. We transfer these parameters to a channel reach in Williams Canyon (Williams Downstream) and adjust them toward post-fire conditions. We model runoff and sediment yield for several storms following the fire. Three post-fire terrestrial Light Detection and Ranging (LiDAR) images (21 April 2013, 14 September 2013, and 16 September 2014) are used to estimate total erosion and deposition at the reach scale. We use the LiDAR-based information to calibrate the post-fire model. Preliminary modeling results indicate 3870-125 kg/ha of sediment in the Williams Downstream reach. The uncalibrated model overestimated (410% in the first year) and underestimated (87.2% in the second year) the erosion. Model calibration reduced the Root Mean Square Error (RMSE) of sediment to 0.016% for the first year and 0.09% for the second year. The parameters calibrated for the Williams Downstream channel reach will be used to develop models for seven other channel reaches within the area burned by the Waldo Canyon Fire, where the performance can be evaluated with LiDAR estimates. Results of this research will enhance our understanding of wildfire disturbance on coupled hydrologic and geomorphic processes. Findings will also improve model parameterization that can

Combining Mechanistic Approaches for Studying Eco-Hydro-Geomorphic Coupling

NASA Astrophysics Data System (ADS)

Francipane, A.; Ivanov, V.; Akutina, Y.; Noto, V.; Istanbullouglu, E.

2008-12-01

Vegetation interacts with hydrology and geomorphic form and processes of a river basin in profound ways. Despite recent advances in hydrological modeling, the dynamic coupling between these processes is yet to be adequately captured at the basin scale to elucidate key features of process interaction and their role in the organization of vegetation and landscape morphology. In this study, we present a blueprint for integrating a geomorphic component into the physically-based, spatially distributed ecohydrological model, tRIBS- VEGGIE, which reproduces essential water and energy processes over the complex topography of a river basin and links them to the basic plant life regulatory processes. We present a preliminary design of the integrated modeling framework in which hillslope and channel erosion processes at the catchment scale, will be coupled with vegetation-hydrology dynamics. We evaluate the developed framework by applying the integrated model to Lucky Hills basin, a sub-catchment of the Walnut Gulch Experimental Watershed (Arizona). The evaluation is carried out by comparing sediment yields at the basin outlet, that follows a detailed verification of simulated land-surface energy partition, biomass dynamics, and soil moisture states.

Geomorphic evidence for recent uplift of the Fitzcarrald Arch (Peru): A response to the Nazca Ridge subduction

NASA Astrophysics Data System (ADS)

Regard, V.; Lagnous, R.; Espurt, N.; Darrozes, J.; Baby, P.; Roddaz, M.; Calderon, Y.; Hermoza, W.

2009-06-01

The 400 000 km 2-wide Fitzcarrald Arch constitutes a wide topographic high of the Amazon Basin against the central Andes. In order to constrain its formation mechanisms and in particular to test its relationships to the Nazca ridge subduction, a quantitative geomorphology analysis of the Arch is performed using hypsometric integrals, elongation and azimuths of 7th- and 5th-order catchments. They all express a trend from high maturity to low maturity from NW towards SE. This maturity gradient coupled with the local drainage direction demonstrate that the Fitzcarrald Arch is not a 'classical' alluvial fan, since its apex is located 100 km east to the Subandean Thrust Front and the corresponding sedimentary pile is lacking. Nor is the Arch the superficial expression of an inherited transfer zone, because its geomorphic shape is radial and it does not diverge from a symmetry axis; moreover, such a reactivated structure is not found at depth on seismic profiles. In addition, our data show that underlying geomorphic control on catchment initiation and development has progressed from NW to SE, which in combination with the observation of crustal doming by Espurt et al. [Espurt, N., Baby, P., Brusset, S., Roddaz, M., Hermoza, W., Regard, V., Antoine, P.O., Salas-Gismondi, R., Bolaños, R., 2007. How does the Nazca Ridge subduction influence the modern Amazonian foreland basin? Geology 35, 515-518.] suggests that this relief is caused by the eastward sliding of the buoyant Nazca ridge beneath the South American lithosphere.

Impact of 1985 hurricanes on Isles Dernieres, Louisiana: Temporal and spatial analysis of coastal geomorphic changes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Debusshere, K.; Westphal, K.; Penland, S.

1989-09-01

Catastrophic geomorphic changes occurred in the Isles Dernieres barrier island arc as a result of the direct impact of three hurricanes in 1985. The severity of the impact of hurricanes Danny, Elena, and Juan had not been equaled since the landfall of hurricanes Betsy and Camille in the late 1960s. The Isles Dernieres had not been subjected to a direct hurricane landfall since hurricane Bob in 1979. The recent hurricane impacts provided the USGS/LGS Louisiana Cooperative Barrier Island and Land Loss Study the opportunity to examine the process-response characteristics of this low-profile transgressive barrier island arc to multiple hurricane impactsmore » in a single hurricane season. The geomorphic changes along the Isles Dernieres were determined using four sequential airborne videotape surveys acquired in July 1984, July 1985 (pre-storm), August 1985 (post-Danny) and November 1985 (post-Juan) and mapped on 1:24,000 base maps produced from concurrent vertical aerial photography. A coastal geomorphic classification was developed to describe, quantify, and map the alongshore geomorphic, sedimentologic , and vegetative character of this barrier shoreline. The classification consists of three levels of descriptors: (1) primary morphology to define the predominant longshore morphology, (2) modifiers to depict the small-scale longshore features, and (3) variants to locate and quantify important coastal features, not mappable at the scale used.« less

Examples of geomorphic reclamation on mined lands in Spain by using the GeoFluv method

NASA Astrophysics Data System (ADS)

Martín Duque, José F.; Bugosh, Nicholas; de Francisco, Cristina; Hernando, Néstor; Martín, Cristina; Nicolau, José M.; Nyssen, Sara; Tejedor, María; Zapico, Ignacio

2015-04-01

This paper describes seven examples of geomorphic reclamation on mined lands of Spain, as solutions for complex environmental problems, by using the GeoFluv method through the Natural Regrade software (Carlson). Of these seven examples, four of them have been partially or totally constructed. Each of them has its own particularities and contributions, becoming innovative geomorphic solutions to existing environmental (ecological, social and economic) problems. The Quebraderos de la Serrana example (Toledo province) allowed a local company to get permission for slate quarrying in a highly ecologically vulnerable area; before that, the permission for extracting rocks had been rejected with a conventional reclamation approach. The Somolinos case is, to this date, the most complete geomorphic reclamation in Spain, and the first one in Europe to have been built by using the GeoFluv method. This restoration has healed a degraded area of about six hectares at the outskirts of the Somolinos hamlet, in a valuable rural landscape of the Guadalajara province. The Arlanza example (Leon province) shows a design which proposes to restore the hydrological connectivity of a coal mine dump which blocked a valley. The Machorro and María Jose examples (Guadalajara province) are allowing kaolin mining to be compatible with the preservation of protected areas at the edge of the Upper Tagus Natural Park (UTNP), in highly vulnerable conditions for water erosion. The Campredó case (Tarragona province) shows an agreement between a mining company, the academia, and the Catalonian Agency of Water, to combine a high standard of geomorphic reclamation with solving problems caused by flooding downstream of a clay mining area. Finally, the Nuria example is also located at the UTNP area; the goals here are to stabilize a large landslide in a waste dump and to minimize the risk of occurrence of flash floods from mining ponds. Additional information on these examples and about the state of art of

Novel Autism Subtype-Dependent Genetic Variants Are Revealed by Quantitative Trait and Subphenotype Association Analyses of Published GWAS Data

PubMed Central

Hu, Valerie W.; Addington, Anjene; Hyman, Alexander

2011-01-01

The heterogeneity of symptoms associated with autism spectrum disorders (ASDs) has presented a significant challenge to genetic analyses. Even when associations with genetic variants have been identified, it has been difficult to associate them with a specific trait or characteristic of autism. Here, we report that quantitative trait analyses of ASD symptoms combined with case-control association analyses using distinct ASD subphenotypes identified on the basis of symptomatic profiles result in the identification of highly significant associations with 18 novel single nucleotide polymorphisms (SNPs). The symptom categories included deficits in language usage, non-verbal communication, social development, and play skills, as well as insistence on sameness or ritualistic behaviors. Ten of the trait-associated SNPs, or quantitative trait loci (QTL), were associated with more than one subtype, providing partial replication of the identified QTL. Notably, none of the novel SNPs is located within an exonic region, suggesting that these hereditary components of ASDs are more likely related to gene regulatory processes (or gene expression) than to structural or functional changes in gene products. Seven of the QTL reside within intergenic chromosomal regions associated with rare copy number variants that have been previously reported in autistic samples. Pathway analyses of the genes associated with the QTL identified in this study implicate neurological functions and disorders associated with autism pathophysiology. This study underscores the advantage of incorporating both quantitative traits as well as subphenotypes into large-scale genome-wide analyses of complex disorders. PMID:21556359

Modelling the impact of dam removal on geomorphic channel response and sediment delivery: an Austrian case study

NASA Astrophysics Data System (ADS)

Pöppl, Ronald; Coulthard, Tom; Keesstra, Saskia; Keiler, Margreth

2015-04-01

Dams are often considered to have the most significant impact on rivers as dam construction generally reduces downstream sediment fluxes which further involves geomorphic changes in the affected river reaches. Since many dams no longer fulfill their intended purpose (e.g. due to siltation), are dangerous (e.g. catastrophic dam failures) and/or are ecologically damaging (e.g. habitat destruction), within the last two decades several dams have been removed and many more are already proposed for removal. Unfortunately, there is still only little empirical knowledge about the geomorphic consequences of dam removals and the related sediment release which represents a big challenge for river management. Modelling is one way to approach this problem. In the presented study we modelled the impacts of dam removal on geomorphic channel processes, channel morphology and sediment delivery further considering the role of channel engineering measures and reservoir excavation within a river reach impacted by a series of dams using the landscape evolution model CAESAR-Lisflood. The model was run with data from a small catchment located in Lower Austria. Modelled geomorphic channel changes and sediment fluxes were spatio-temporally analyzed, related to real-world data and are discussed in the context of river management issues.

Neotectonics and geomorphic evolution of the northwestern arm of the Yellowstone Tectonic Parabola: Controls on intra-cratonic extensional regimes, southwest Montana

USGS Publications Warehouse

Ruleman, Chester A.; Larsen, Mort; Stickney, Michael C.

2014-01-01

The catastrophic Hebgen Lake earthquake of 18 August 1959 (MW 7.3) led many geoscientists to develop new methods to better understand active tectonics in extensional tectonic regimes that address seismic hazards. The Madison Range fault system and adjacent Hebgen Lake–Red Canyon fault system provide an intermountain active tectonic analog for regional analyses of extensional crustal deformation. The Madison Range fault system comprises fault zones (~100 km in length) that have multiple salients and embayments marked by preexisting structures exposed in the footwall. Quaternary tectonic activity rates differ along the length of the fault system, with less displacement to the north. Within the Hebgen Lake basin, the 1959 earthquake is the latest slip event in the Hebgen Lake–Red Canyon fault system and southern Madison Range fault system. Geomorphic and paleoseismic investigations indicate previous faulting events on both fault systems. Surficial geologic mapping and historic seismicity support a coseismic structural linkage between the Madison Range and Hebgen Lake–Red Canyon fault systems. On this trip, we will look at Quaternary surface ruptures that characterize prehistoric earthquake magnitudes. The one-day field trip begins and ends in Bozeman, and includes an overview of the active tectonics within the Madison Valley and Hebgen Lake basin, southwestern Montana. We will also review geologic evidence, which includes new geologic maps and geomorphic analyses that demonstrate preexisting structural controls on surface rupture patterns along the Madison Range and Hebgen Lake–Red Canyon fault systems.

Is there a geomorphic expression of interbasin groundwater flow in watersheds? Interactions between interbasin groundwater flow, springs, streams, and geomorphology.

DOE PAGES

Frisbee, Marty D.; Tysor, Elizabeth H.; Stewart-Maddox, Noah; ...

2016-02-13

Interbasin groundwater flow (IGF) can play a significant role in the generation and geochemical evolution of streamflow. However, it is exceedingly difficult to identify IGF, and to determine the location and quantity of water that is exchanged between watersheds. How does IGF affect landscape/watershed geomorphic evolution? Can geomorphic metrics be used to identify the presence of IGF? We examine these questions in two adjacent sedimentary watersheds in northern New Mexico using a combination of geomorphic/landscape metrics, springflow residence times, and spatial geochemical patterns. IGF is expressed geomorphically in the landscape placement of springs, and flow direction and shape of streammore » channels. Springs emerge preferentially on one side of stream valleys where landscape incision has intercepted IGF flowpaths. Stream channels grow toward the IGF source and show little bifurcation. In addition, radiocarbon residence times of springs decrease and the geochemical composition of springs changes as the connection to IGF is lost.« less

Is there a geomorphic expression of interbasin groundwater flow in watersheds? Interactions between interbasin groundwater flow, springs, streams, and geomorphology

NASA Astrophysics Data System (ADS)

Frisbee, Marty D.; Tysor, Elizabeth H.; Stewart-Maddox, Noah S.; Tsinnajinnie, Lani M.; Wilson, John L.; Granger, Darryl E.; Newman, Brent D.

2016-02-01

Interbasin groundwater flow (IGF) can play a significant role in the generation and geochemical evolution of streamflow. However, it is exceedingly difficult to identify IGF and to determine the location and quantity of water that is exchanged between watersheds. How does IGF affect landscape/watershed geomorphic evolution? Can geomorphic metrics be used to identify the presence of IGF? We examine these questions in two adjacent sedimentary watersheds in northern New Mexico using a combination of geomorphic/landscape metrics, springflow residence times, and spatial geochemical patterns. IGF is expressed geomorphically in the landscape placement of springs and flow direction and shape of stream channels. Springs emerge preferentially on one side of stream valleys where landscape incision has intercepted IGF flow paths. Stream channels grow toward the IGF source and show little bifurcation. In addition, radiocarbon residence times of springs decrease and the geochemical composition of springs changes as the connection to IGF is lost.

Geomorphic and Hydrological challenges in Africa: implications for soil and water conservation

NASA Astrophysics Data System (ADS)

Vanmaercke, Matthias; Poesen, Jean

2017-04-01

Expected scenarios of climate change and population growth confront Africa with various important challenges related to food, water and energy security. Many of these challenges are closely linked to the impacts of soil erosion and other geomorphic processes, such as reduced crop yields, sedimentation of reservoirs and reduced freshwater quality. Despite the urgency and extent of many of these challenges, the causes and dynamics of these processes and their impacts remain severely understudied. This becomes apparent when the availability of e.g. soil erosion and catchment sediment export measurements for Africa is compared to that of other continents. Nonetheless, a substantial amount of geomorphic research has been conducted in Africa. Many of this work dates back from several decades ago, and were often only reported in 'gray literature' (e.g. internal reports). Here we present an overview of our current state of knowledge on soil erosion and its implications in Africa. We discuss which geomorphic process rate measurements are currently available and what can be learned from these with respect to the challenged raised above. We especially focus on our current understanding about the effectiveness of soil and water conservation techniques at various spatial and temporal scales. Based on specific case-studies (e.g. in Ethiopia and Uganda) and a meta-analysis of previous work, we highlight some research gaps, research needs and research opportunities when aiming to use Africa's soil and water resources sustainably and efficiently.

Soil-geomorphic significance of land surface characteristics in an arid mountain range, Mojave Desert, USA

USGS Publications Warehouse

Hirmas, D.R.; Graham, R.C.; Kendrick, K.J.

2011-01-01

Mountains comprise an extensive and visually prominent portion of the landscape in the Mojave Desert, California. Landform surface properties influence the role these mountains have in geomorphic processes such as dust flux and surface hydrology across the region. The primary goal of this study was to describe and quantify land surface properties of arid-mountain landforms as a step toward unraveling the role these properties have in soil-geomorphic processes. As part of a larger soil-geomorphic study, four major landform types were identified within the southern Fry Mountains in the southwestern Mojave Desert on the basis of topography and landscape position: mountaintop, mountainflank, mountainflat (intra-range low-relief surface), and mountainbase. A suite of rock, vegetation, and morphometric land surface characteristic variables was measured at each of 65 locations across the study area, which included an associated piedmont and playa. Our findings show that despite the variation within types, landforms have distinct land surface properties that likely control soil-geomorphic processes. We hypothesize that surface expression influences a feedback process at this site where water transports sediment to low lying areas on the landscape and wind carries dust and soluble salts to the mountains where they are washed between rocks, incorporated into the soil, and retained as relatively long-term storage. Recent land-based video and satellite photographs of the dust cloud emanating from the Sierra Cucapá Mountains in response to the 7.2-magnitude earthquake near Mexicali, Mexico, support the hypothesis that these landforms are massive repositories of dust.

Ecologically relevant geomorphic attributes of streams are impaired by even low levels of watershed effective imperviousness

NASA Astrophysics Data System (ADS)

Vietz, Geoff J.; Sammonds, Michael J.; Walsh, Christopher J.; Fletcher, Tim D.; Rutherfurd, Ian D.; Stewardson, Michael J.

2014-02-01

Urbanization almost inevitably results in changes to stream morphology. Understanding the mechanisms for such impacts is a prerequisite to minimizing stream degradation and achieving restoration goals. However, investigations of urban-induced changes to stream morphology typically use indicators of watershed urbanization that may not adequately represent degrading mechanisms and commonly focus on geomorphic attributes such as channel dimensions that may be of little significance to the ecological goals for restoration. We address these shortcomings by testing if a measure characterizing urban stormwater drainage system connections to streams (effective imperviousness, EI) is a better predictor of change to ecologically relevant geomorphic attributes than a more general measure of urban density (total imperviousness, TI). We test this for 17 sites in independent watersheds across a gradient of urbanization. We found that EI was a better predictor of all geomorphic variables tested than was TI. Bank instability was positively correlated with EI, while width/depth (a measure of channel incision), bedload sediment depth, and frequency of bars, benches, and large wood were negatively correlated. Large changes in all geomorphic variables were detected at very low levels of EI (< 2-3%). Excess urban stormwater runoff, as represented by EI, drives geomorphic change in urban streams, highlighting the dominant role of the stormwater drainage system in efficiently transferring stormwater runoff from impervious surfaces to the stream, as found for ecological indicators. It is likely that geomorphic condition of streams in urbanizing watersheds, particularly those attributes of ecological relevance, can only be maintained if excess urban stormwater flows are kept out of streams through retention and harvesting. The extent to which EI can be reduced within urban and urbanizing watersheds, through techniques such as distributed stormwater harvesting and infiltration, and the

Geomorphic Proxies to Test Strain Accommodation in Southwestern Puerto Rico from Digital Elevation Models

NASA Astrophysics Data System (ADS)

Barrios Galindez, I. M.; Xue, L.; Laó-Dávila, D. A.

2017-12-01

The Puerto Rico and the Virgin Island microplate is located in at the northeastern corner of the Caribbean plate boundary with North America is placed within an oblique subduction zone in which strain patterns remain unresolved. Seismic hazard is a major concern in the region as seen from the seismic history of the Caribbean-North America plate boundary zone. Most of the tectonic models of the microplate show the accommodation of strain occurring offshore, despite evidence from seismic activity, trench studies, and geodetic studies suggesting the existence of strain accomodation in southwest Puerto Rico. These studies also suggest active faulting specially in the western part of the island, but limited work has been done regarding their mechanism. Therefore, this work aims to define and map these active faults in western Puerto Rico by integrating data from analysis of fluvial terrains, and detailed mapping using digital elevation model (DEM) extracted from Shuttle Radar Topography Mission (SRTM) and LIDAR data. The goal is to (1) identify structural features such as surface lineaments and fault scarps for the Cerro Goden fault, South Lajas fault, and other active faults in the western of Puerto Rico, (2) correlate these information with the distribution pattern and values of the geomorphic proxies, including Chi integral (χ), normalized steepness (ksn) and Asymmetric factor (AF). Our preliminary results from geomorphic proxies and Lidar data provide some insight of the displacement and stage of activities of these faults (e.g. Boqueron-Punta Malva Fault and Cerro Goden fault). Also, the anomaly of the geomorphic proxies generally correlate with the locations of the landslides in the southwestern Puerto Rico. The geomorphic model of this work include new information of active faulting fundamental to produce better seismic hazards maps. Additionally, active tectonics studies are vital to issue and adjust construction buildings codes and zonification codes.

Hydro-geomorphic connectivity and landslide features extraction to identifying potential threats and hazardous areas

NASA Astrophysics Data System (ADS)

Tarolli, Paolo; Fuller, Ian C.; Basso, Federica; Cavalli, Marco; Sofia, Giulia

2017-04-01

Hydro-geomorphic connectivity has significantly emerged as a new concept to understand the transfer of surface water and sediment through landscapes. A further scientific challenge is determining how the concept can be used to enable sustainable land and water management. This research proposes an interesting approach to integrating remote sensing techniques, connectivity theory, and geomorphometry based on high-resolution digital terrain model (HR-DTMs) to automatically extract landslides crowns and gully erosion, to determine the different rate of connectivity among the main extracted features and the river network, and thus determine a possible categorization of hazardous areas. The study takes place in two mountainous regions in the Wellington Region (New Zealand). The methodology is a three step approach. Firstly, we performed an automatic detection of the likely landslides crowns through the use of thresholds obtained by the statistical analysis of the variability of landform curvature. After that, the research considered the Connectivity Index to analyse how a complex and rugged topography induces large variations in erosion and sediment delivery in the two catchments. Lastly, the two methods have been integrated to create a unique procedure able to classify the different rate of connectivity among the main features and the river network and thus identifying potential threats and hazardous areas. The methodology is fast, and it can produce a detailed and updated inventory map that could be a key tool for erosional and sediment delivery hazard mitigation. This fast and simple method can be a useful tool to manage emergencies giving priorities to more failure-prone zones. Furthermore, it could be considered to do a preliminary interpretations of geomorphological phenomena and more in general, it could be the base to develop inventory maps. References Cavalli M, Trevisani S, Comiti F, Marchi L. 2013. Geomorphometric assessment of spatial sediment connectivity

Ecohydro-geomorphic implications of orographic precipitation on landform evolution using a landscape evolution model

NASA Astrophysics Data System (ADS)

Yetemen, O.; Saco, P. M.

2016-12-01

Orography induced precipitation and its implications on vegetation dynamics and landscape morphology have long been documented in the literature. However a numerical framework that integrates a range of ecohydrologic and geomorphic processes to explore the coupled ecohydro-geomorphic landscape response of catchments where pronounced orographic precipitation prevails has been missing. In this study, our aim is to realistically represent orographic-precipitation-driven ecohydrologic dynamics in a landscape evolution model (LEM). The model is used to investigate how ecohydro-geomorphic differences caused by differential precipitation patterns on the leeward and windward sides of low-relief landscapes lead to differences in the organization of modelled topography, soil moisture and plant biomass. We use the CHILD LEM equipped with a vegetation dynamics component that explicitly tracks above- and below-ground biomass, and a precipitation forcing component that simulates rainfall as a function of elevation and orientation. The preliminary results of the model show how the competition between an increased shear stress through runoff production and an enhanced resistance force due to denser canopy cover shape the landscape. Moreover, orographic precipitation leads to not only the migration of the divide between leeward and windward slopes but also a change in the concavity of streams. These results clearly demonstrate the strong coupling between landform evolution and climate processes.

Differentiating the relative importance of land cover change and geomorphic processes on fine sediment sequestration in a logged watershed

NASA Astrophysics Data System (ADS)

Kasprak, Alan; Magilligan, Francis J.; Nislow, Keith H.; Renshaw, Carl E.; Snyder, Noah P.; Dade, W. Brian

2013-03-01

Timber harvest often results in accelerated soil erosion and subsequent elevated fine (< 2 mm) sediment delivery to channels causing deleterious effects to numerous aquatic species, particularly salmonid fishes. Here we determine, through sediment physical analyses (pebble counts, embeddedness surveys, and interstitial shelter space counts) and geochemical analyses (7Be and 210Pbex activities), the amount and timing of delivery of fine sediment currently found on streambeds of the Narraguagus River watershed in coastal Maine. The role of recent timber harvest, documented via aerial photo spatial analysis, on fine sediment delivery is contrasted with the ability of the glacially influenced topography and surficial geology to deliver fine sediment to streams and to influence channel substrate. Results show that of the land use and geomorphic variables examined, only 210Pbex activities were significantly correlated with the amount of upstream harvest (r2 = 0.49). Concurrently, we find that unit stream power (particularly the slope component) explains much of the variability in channel substrate and that slope and stream power are largely influenced by the legacy of Pleistocene glaciation on channel form. Results suggest a conceptual model whereby fine sediment delivery as a result of late twentieth century timber harvest is likely dampened because of the low gradient landscape of coastal Maine. While geochemical tracers indicate recent fine sediment delivery in harvested areas, channels are likely capable of quickly winnowing these fines from the channel bed. These results further suggest that under contemporary land use conditions, the geomorphic and geologic setting represents a first-order control on channel substrate and habitat suitability for salmonid fishes, including federally endangered Atlantic salmon (Salmo salar), in coastal drainages of northeastern Maine.

Effects of simultaneous climate change and geomorphic evolution on thermal characteristics of a shallow Alaskan lake

USGS Publications Warehouse

Griffiths, Jennifer R.; Schindler, Daniel E.; Balistrieri, Laurie S.; Ruggerone, Gregory T.

2011-01-01

We used a hydrodynamics model to assess the consequences of climate warming and contemporary geomorphic evolution for thermal conditions in a large, shallow Alaskan lake. We evaluated the effects of both known climate and landscape change, including rapid outlet erosion and migration of the principal inlet stream, over the past 50 yr as well as future scenarios of geomorphic restoration. Compared to effects of air temperature during the past 50 yr, lake thermal properties showed little sensitivity to substantial (~60%) loss of lake volume, as the lake maximum depth declined from 6 m to 4 m driven by outlet erosion. The direction and magnitude of future lake thermal responses will be driven largely by the extent of inlet stream migration when it occurs simultaneously with outlet erosion. Maintaining connectivity with inlet streams had substantial effects on buffering lake thermal responses to warming climate. Failing to account for changing rates and types of geomorphic processes under continuing climate change may misidentify the primary drivers of lake thermal responses and reduce our ability to understand the consequences for aquatic organisms.

Geomorphic degradations on the surface of venus: an analysis of venera 9 and venera 10 data.

PubMed

Florensky, C P; Ronca, L B; Basilevsky, A T

1977-05-20

On the basis of the physical and chemical measurements made on the surface of Venus and transmitted back to Earth by the Soviet automatic landers Venera 9 and Venera 10, a geomorphically inactive environment should be expected. An analysis of the television photographs reveals, however, that at least two processes of degradation occur. One operates on a scale of decimeters to meters and is responsible for the fracturing of a layered source rock and the subsequent downslope movement of the fragments. Mass-wasting, perhaps activated by venusian quakes or by unknown geological processes, is likely to be the agent. Another geomorphic degradation process occurs on the scale of a centimeter or less and is responsible for the rounding of edges and the pitting of rock surfaces. The agents of this process are not known, but atmospheric action, perhaps in connection with volcanic episodes, may be the cause. From a geomorphic point of view, the landscape of the Venera 9 landing site can be considered young and that of the Venera 10 landing site, mature.

Study Quality in SLA: An Assessment of Designs, Analyses, and Reporting Practices in Quantitative L2 Research

ERIC Educational Resources Information Center

Plonsky, Luke

2013-01-01

This study assesses research and reporting practices in quantitative second language (L2) research. A sample of 606 primary studies, published from 1990 to 2010 in "Language Learning and Studies in Second Language Acquisition," was collected and coded for designs, statistical analyses, reporting practices, and outcomes (i.e., effect…

Human-induced geomorphic change across environmental gradients

NASA Astrophysics Data System (ADS)

Vanacker, V.; Molina, A.; Bellin, N.; Christl, M.

2016-12-01

Human-induced land cover changes are causing important adverse effects on the ecological services rendered by mountain ecosystems, and the number of case-studies of the impact of humans on soil erosion and sediment yield has mounted rapidly. Anthropogenic disturbance of natural vegetation can profoundly alter the physical, chemical and biological processes within soils. Rapid removal of topsoil during intense farming can result in an imbalance between soil production through chemical weathering and physical soil erosion, with direct implications on nutrient cycling, soil fertility and agricultural production. In this study, we present a conceptual model for assessing human-induced erosion for a wide variety of environmental settings and pose that human-induced geomorphic change cannot be assessed solely based on modern erosion rates as natural or baseline erosion rates can be important in e.g. mountainous terrain. As such, we assess the vulnerability of a given ecosystem to human-induced land cover change by quantifying the change in catchment-wide erosion rates resulting from anthropogenic changes in vegetation cover. Human-induced erosion is here approximated by the ratio of the total specific sediment yield to the natural erosional mass flux, and is dimensionless. The conceptual model is applied to three contrasting environmental settings where data on soil production, physical soil erosion and long-term denudation are available: the tropical Andes, subtropical southern Brazil, and semi-arid Spanish Cordillera. The magnitude of human-induced geomorphic change strongly differs between the three regions. The data suggest that the sensitivity to human-induced erosion is ecosystem dependent, and related to soil erosivity and potential vegetation cover disturbances as a result of human impact. It may therefore be expected that the potential for erosion regulation is larger in well-vegetated ecosystem where strong differences may exist in vegetation cover between

Scaling considerations related to interactions of hydrologic, pedologic and geomorphic processes (Invited)

NASA Astrophysics Data System (ADS)

Sidle, R. C.

2013-12-01

Hydrologic, pedologic, and geomorphic processes are strongly interrelated and affected by scale. These interactions exert important controls on runoff generation, preferential flow, contaminant transport, surface erosion, and mass wasting. Measurement of hydraulic conductivity (K) and infiltration capacity at small scales generally underestimates these values for application at larger field, hillslope, or catchment scales. Both vertical and slope-parallel saturated flow and related contaminant transport are often influenced by interconnected networks of preferential flow paths, which are not captured in K measurements derived from soil cores. Using such K values in models may underestimate water and contaminant fluxes and runoff peaks. As shown in small-scale runoff plot studies, infiltration rates are typically lower than integrated infiltration across a hillslope or in headwater catchments. The resultant greater infiltration-excess overland flow in small plots compared to larger landscapes is attributed to the lack of preferential flow continuity; plot border effects; greater homogeneity of rainfall inputs, topography and soil physical properties; and magnified effects of hydrophobicity in small plots. At the hillslope scale, isolated areas with high infiltration capacity can greatly reduce surface runoff and surface erosion at the hillslope scale. These hydropedologic and hydrogeomorphic processes are also relevant to both occurrence and timing of landslides. The focus of many landslide studies has typically been either on small-scale vadose zone process and how these affect soil mechanical properties or on larger scale, more descriptive geomorphic studies. One of the issues in translating laboratory-based investigations on geotechnical behavior of soils to field scales where landslides occur is the characterization of large-scale hydrological processes and flow paths that occur in heterogeneous and anisotropic porous media. These processes are not only affected

Predicting geomorphic stability in low-order streams of the western Lake Superior basin

EPA Science Inventory

Width:depth ratios, entrenchment ratios, gradients, and median substrate particle sizes (D50s) were measured in 32 second and third order stream reaches in the western Lake Superior basin, and stream reaches were assigned a Rosgen geomorphic classification. Over 700 measurements ...

Effects of Land-Cover Change, Floods, and Stream Position on Geomorphic Processes - Implications for Restoration Activities

USGS Publications Warehouse

Fitzpatrick, F.A.; ,

2001-01-01

A geomorphic study for North Fish Creek, a northern Wisconsin tributary to Lake Superior was analyzed to determine the hydrologic and geomorphic changes caused by clear-cut logging and agricultural activity. Discharge magnitude estimated with HEC-2 for full-channel capacities indicate that modern full-channel discharges are about twice as large as pre-1946 full-channel discharges. Flood-plain deposition rates were high along the transitional main stem after European settlement. Restoration and protection activities would be most effective if focused on watershed practices to reduce runoff and on channel restoration that reduce buff and bank erosion in the upper and transitional main stems.

Influences of Geomorphic Complexity and Rehabilitation on Nutrient Uptake in an Urban Stream

NASA Astrophysics Data System (ADS)

Mueller, J. S.; Baker, D. W.; Bledsoe, B. P.

2006-12-01

Headwater streams, which are highly vulnerable to anthropogenic impacts associated with land use change, have large surface-to-volume ratios that favor retention and removal of nitrogen. We describe a study focused on how geomorphic complexity is related to nutrient retention in impacted and restored headwater streams along a gradient of human land use. A key element of the study is a detailed protocol for characterizing the spatial distribution of physical habitat units composed of relatively distinct combinations of flow hydraulics and textural facies. We are using the detailed physical characterization and nutrient injections in paired segments of a Colorado Front Range urban stream to examine associations among geomorphic complexity, nitrogen uptake, and the degree and style of channel rehabilitation. The results of the study have implications for the viability of stream rehabilitation as a tool for reducing N delivery to downstream aquatic systems that are vulnerable to eutrophication.

Vegetation as a tool in the interpretation of fluvial geomorphic processes and landforms

USGS Publications Warehouse

Hupp, Cliff R.; Dufour, S; Bornette, G

2016-01-01

This chapter exemplifies that vegetation can be used as a tool for geomorphic interpretation in several major ways. It presents a general overview: through dendrogeomorphic analysis (tree rings) to estimate the timing of important geomorphic events including floods and mass wasting and to estimate rates of erosion and sedimentation; through the documentation and interpretation of species distributional patterns that are established in response to prevailing hydrogeomorphic conditions; and through the role that it plays, depending on size, shape and growth form, in flow rates and subsequent erosion and deposition processes. Floods, from prolonged inundation characteristic of relatively large, low-gradient basins to high-gradient and short-period destructive events, are the most important extrinsic factor in bottomland systems. Vegetation organization, composition and plant community dynamics on river floodplains are controlled by disturbance type and scale, and biological characteristics of plants linked to resistance to disturbance, resilience and competitive ability.

Part 1: The geomorphic evolution of Eastern Margaritifer Sinus, Mars

NASA Technical Reports Server (NTRS)

Grant, John A., III

1987-01-01

Geomorphic mapping, crater counts on selected surfaces, and a detailed study of drainage basins, were used to trace the geologic evolution of Margaritifer Sinus Quandrangle. The oldest dated surface covering these basins evolved during the period of intense bombardment. Since that time four resurfacing events have occurred. The first three were all of regional extent, while the fourth, occurred locally, filling basins. Valley networks, incised in the third event unit, are always buried by the fourth event unit when present. A peak in geomorphic activity occurred from 10,000 to 5000. Events during this period included the formation of Uzboi/Ladon Valles with deposition in Ladon Basin, and the formation of Samara and Parana/Loire Valles in MC19SE. Flow out of Ladon Basin and to a lesser extent Samara and Parana/Loire Valles created etched terrain at their confluence that was synchronous with initiation of Margaritifer and Iani Chaos. The range of dates for the chaos may be due to periodic collapse. The extensive, well integrted nature of Samara and Parana/Loire Valles requires the existence of a long period of favorable climatic conditions to allow their formation. Development of these two systems was probably through sapping processes.

Quantifying geomorphic change at ephemeral stream restoration sites using a coupled-model approach

USGS Publications Warehouse

Norman, Laura M.; Sankey, Joel B.; Dean, David; Caster, Joshua J.; DeLong, Stephen B.; Henderson-DeLong, Whitney; Pelletier, Jon D.

2017-01-01

Rock-detention structures are used as restoration treatments to engineer ephemeral stream channels of southeast Arizona, USA, to reduce streamflow velocity, limit erosion, retain sediment, and promote surface-water infiltration. Structures are intended to aggrade incised stream channels, yet little quantified evidence of efficacy is available. The goal of this 3-year study was to characterize the geomorphic impacts of rock-detention structures used as a restoration strategy and develop a methodology to predict the associated changes. We studied reaches of two ephemeral streams with different watershed management histories: one where thousands of loose-rock check dams were installed 30 years prior to our study, and one with structures constructed at the beginning of our study. The methods used included runoff, sediment transport, and geomorphic modelling and repeat terrestrial laser scanner (TLS) surveys to map landscape change. Where discharge data were not available, event-based runoff was estimated using KINEROS2, a one-dimensional kinematic-wave runoff and erosion model. Discharge measurements and estimates were used as input to a two-dimensional unsteady flow-and-sedimentation model (Nays2DH) that combined a gridded flow, transport, and bed and bank simulation with geomorphic change. Through comparison of consecutive DEMs, the potential to substitute uncalibrated models to analyze stream restoration is introduced. We demonstrate a new approach to assess hydraulics and associated patterns of aggradation and degradation resulting from the construction of check-dams and other transverse structures. Notably, we find that stream restoration using rock-detention structures is effective across vastly different timescales.

Broad timescale forcing and geomorphic mediation of tidal marsh flow and temperature dynamics

USGS Publications Warehouse

Enwright, Christopher; Culberson, Steven; Burau, Jon R.

2013-01-01

Tidal marsh functions are driven by interactions between tides, landscape morphology, and emergent vegetation. Less often considered are the diurnal pattern of tide extremes and seasonal variation of solar insolation in the mix of tidal marsh driver interactions. This work demonstrates how high-frequency hydroperiod and water temperature variability emerges from disparate timescale interactions between tidal marsh morphology, tidal harmonics, and meteorology in the San Francisco Estuary. We compare the tidal and residual flow and temperature response of neighboring tidal sloughs, one possessing natural tidal marsh morphology, and one that is modified for water control. We show that the natural tidal marsh is tuned to lunar phase and produces tidal and fortnight water temperature variability through interacting tide, meteorology, and geomorphic linkages. In contrast, temperature variability is dampened in the modified slough where overbank marsh plain connection is severed by levees. Despite geomorphic differences, a key finding is that both sloughs are heat sinks in summer by latent heat flux-driven residual upstream water advection and sensible and long-wave heat transfer. The precession of a 335-year tidal harmonic assures that these dynamics will shift in the future. Water temperature regulation appears to be a key function of natural tidal sloughs that depends critically on geomorphic mediation. We investigate approaches to untangling the relative influence of sun versus tide on residual water and temperature transport as a function of system morphology. The findings of this study likely have ecological consequences and suggest physical process metrics for tidal marsh restoration performance.

Geomorphic and vegetation changes in a meandering dryland river regulated by a large dam, Sauce Grande River, Argentina

NASA Astrophysics Data System (ADS)

Casado, Ana; Peiry, Jean-Luc; Campo, Alicia M.

2016-09-01

This paper investigates post-dam geomorphic and vegetation changes in the Sauce Grande River, a meandering dryland river impounded by a large water-conservation dam. As the dam impounds a river section with scarce influence of tributaries, sources for fresh water and sediment downstream are limited. Changes were inspected based on (i) analysis of historical photographs/imagery spanning pre- (1961) and post-dam (1981, 2004) channel conditions for two river segments located above and below the dam, and (ii) field survey of present channel conditions for a set of eight reference reaches along the river segments. Whilst the unregulated river exhibited active lateral migration with consequent adjustments of the channel shape and size, the river section below the dam was characterized by (i) marked planform stability (93 to 97%), and by (ii) vegetation encroachment leading to alternating yet localized contraction of the channel width (up to 30%). The present river displays a moribund, stable channel where (i) redistribution of sediment along the river course no longer occurs and (ii) channel forms constitute a remnant of a fluvial environment created before closing the dam, under conditions of higher energy. In addition to providing new information on the complex geomorphic response of dryland rivers to impoundment, this paper represents the very first geomorphic assessment of the regulated Sauce Grande and therefore provides an important platform to underpin further research assessing the geomorphic state of this highly regulated dryland river.

Tectono-geomorphic indices of the Erin basin, NE Kashmir valley, India

NASA Astrophysics Data System (ADS)

Ahmad, Shabir; Alam, Akhtar; Ahmad, Bashir; Afzal, Ahsan; Bhat, M. I.; Sultan Bhat, M.; Farooq Ahmad, Hakim; Tectonics; Natural Hazards Research Group

2018-01-01

The present study aims to assess the tectonic activity in the Erin basin (NE Kashmir) on the basis of several relevant geomorphic indices and field observations. We use Digital Elevation Model (SRTM) and Survey of India (SoI) topographic maps in GIS environment to compute the geomorphic indices. The indices i.e., convex hypsometric curve, high hypsometric integral value (Hi > 0.5), low basin elongation ratio (Eb = 0.17), low mountain front sinuosity values (Smf = 1.08 average), low valley floor width ratios (Vf < 1), topographic assymetric character (T < 1), uneven basin asymmetry factor (AF < 50), elongated shape (Bs > 4) suggest that the area is tectonically active. Moreover, prominent irregularities (knickpoints/knickzones) along longitudinal profile of the Erin River even in homogenous resistant lithology (Panjal trap) and anomalous stream gradient index (SL) values reflect that the Erin basin is dissected by two faults (EF-1 and EF-2) with NNW-SSE and SSW-NNE trends respectively. The results of this preliminary study further substantiate the recent GPS studies, which argue that the maximum strain is accumulating in the NE part of the Kashmir Himalaya.

Geomorphic evidence of deformation in the northern part of the New Madrid seismic zone

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fischer, K.J.; Schumm, S.A.

1993-03-01

A geomorphic evaluation of the northern portion of the New Madrid seismic zone between Hickman, KY and Osceola, AR has identified several locations where anomalous geomorphic conditions indicate possible surface deformation. For example, the slope, course, sinuosity and dimensions of the Mississippi River have been affected by the Lake County uplift and Tertiary-age sediments are exposed in its channel. Also, anomalous channel behavior near Caruthersville, MO and Barfield, AR suggests that these two reaches of the Mississippi River are structurally controlled. The Black River northeast of Pocahontas follows a peculiar angular course that suggests fracture control, and course changes ofmore » the Black, St. Francis, and Little Rivers may be related to subsurface faulting, uplift, or downwarping, as well as to differential compaction or the effects of groundwater withdrawal. The topography of Crowley's Ridge suggests that, between Jonesboro and Castor River, it is composed of at least three structural blocks, that are bounded by northeast-southwest trending faults. Near Jonesboro, river patterns appear to be affected by the Jonesboro, AR pluton. The geomorphic evaluation has identified anomalous surface features in the New Madrid seismic zone. Some can be directly linked to mapped structures in the region, whereas others may result from previously unidentified areas of surface deformation. The identification of these anomalies should provide direction for scientists who are employing subsurface techniques in order to locate tectonic deformation in the area.« less

Geomorphic and human influence on large-scale coastal change

USGS Publications Warehouse

Hapke, Cheryl J.; Kratzmann, Meredith G.; Himmelstoss, Emily A.

2013-01-01

An increasing need exists for regional-scale measurements of shoreline change to aid in management and planning decisions over a broad portion of the coast and to inform assessments of coastal vulnerabilities and hazards. A recent dataset of regional shoreline change, covering a large portion of the U.S. East coast (New England and Mid-Atlantic), provides rates of shoreline change over historical (~ 150 years) and recent (25–30 years) time periods making it ideal for a broad assessment of the regional variation of shoreline change, and the natural and human-induced influences on coastal behavior. The variable coastal landforms of the region provide an opportunity to investigate how specific geomorphic landforms relate to the spatial variability of shoreline change. In addition to natural influences on the rates of change, we examine the effects that development and human modifications to the coastline have on the measurements of regional shoreline change.Regional variation in the rates of shoreline change is a function of the dominant type and distribution of coastal landform as well as the relative amount of human development. Our results indicate that geomorphology has measurable influence on shoreline change rates. Anthropogenic impacts are found to be greater along the more densely developed and modified portion of the coast where jetties at engineered inlets impound large volumes of sediment resulting in extreme but discrete progradation updrift of jetties. This produces a shift in averaged values of rates that may mask the natural long-term record. Additionally, a strong correlation is found to exist between rates of shoreline change and relative level of human development. Using a geomorphic characterization of the types of coastal landform as a guide for expected relative rates of change, we found that the shoreline appears to be changing naturally only along sparsely developed coasts. Even modest amounts of development influence the rates of change

The geomorphic response of gravel-bed rivers to dams: perspectives and prospects

Treesearch

Gordon E. Grant

2012-01-01

The paper summarizes over 40 years of research on the downstream geomorphic responses of rivers to dams, with a particular emphasis on gravel-bed rivers, and evaluates the state if the science with respect to predicting channel adjustments: channel incision, lateral adjustments, and bed textural changes. Effects of vegetation and implications for management are also...

Geomorphic and vegetative recovery processes along modified stream channels of West Tennessee

USGS Publications Warehouse

Simon, Andrew; Hupp, C.R. Tennessee

1992-01-01

Hundreds of miles of streams in West Tennessee have been channelized or otherwise modt@ed since the turn of century. After all or parts of a stream are straightened, dredged, or cleared, systematic hydrologic, geomorphic, and ecologic processes collectively begin to reduce energy conditions towards the premodified state. One hundred and five sites along 15 streams were studied in the Obion, Forked Deer, Hatchie, and Wolf River basins. All studied streams, except the Hatchie River, have had major channel modi@cation along all or parts of their courses. Bank material shear-strength properties were determined through drained borehole-shear testing (168 tests) and used to interpret present critical bank conditions and factors of safety, and to estimate future channel-bank stability. Mean values of cohesive strength and angle of internal friction were 1.26 pounds per square inch and 30.1 degrees, respectively. Dendrogeomorphic analyses were made using botanical evidence of channel-bank failures to determine rates of channel widening; buried riparian stems were analyzed to determine rates of bank accretion. Channel bed-level changes through time and space were represented by a power equation. Plant ecological analyses were ma& to infer relative bank stability, to identify indicator species of the stage of bank recovery, and to determine patterns of vegetation development through the course of channel evolution. Quantitative data on morphologic changes were used with previously developed six-stage models of channel evolution and bank-slope development to estimate trends of geomorphic and ecologic processes and forms through time. Immediately after channel modr@cations, a 10- to 1%yearperiod of channel-bed degradation ensues at and upstream from the most recent modifications (area of maximum disturbance). Channel-bed lowering by &gradation was as much as 20 feet along some stream reaches. Downstream from the area of maximum disturbance, the bed was aggraded by the

Assessing geomorphic change along the Trinity River downstream from Lewiston Dam, California, 1980-2011

USGS Publications Warehouse

Curtis, Jennifer A.; Wright, Scott A.; Minear, Justin T.; Flint, Lorraine E.

2015-01-01

The highest rates of change in the areal extents of channel and riparian features were observed during the pre‑2001 period, which was longer and relatively wetter than the post-2001 period. A series of tributary floods in 1997, 1998, and 2006 increased channel complexity and floodplain connectivity. During the post-2006 period, managed-flow releases, in the absence of tributary flooding, combined with gravel augmentation and mechanical restoration, caused localized increases in sediment supply and transport capacity that led to smaller, but measurable, increases in channel complexity and floodplain connectivity in the upper river near Lewiston Dam. Extensive pre-2001 channel widening and the muted geomorphic response of channel rehabilitation sites to post-2001 managed flows highlight the need for continued monitoring and assessment of the magnitude, duration, and timing of prescriptive flows and associated geomorphic responses.

Analysis of shoreline and geomorphic change for Breton Island, Louisiana, from 1869 to 2014

USGS Publications Warehouse

Terrano, Joseph F.; Flocks, James G.; Smith, Kathryn E. L.

2016-04-19

Many barrier islands in the United States are eroding and losing elevation substantively because of storm surge, waves, and sea-level changes. This is particularly true for the deltaic barrier system in Louisiana. Breton Island is near the mouth of the Mississippi River at the southern end of the Chandeleur barrier island chain in southeast Louisiana. This report expands on previous geomorphic studies of Breton Island by incorporating additional historic and recent datasets. Multiple analyses focus on longand short-term shoreline change, as well as episodic events and anthropogenic modification. Analyses periods include long term (1869–2014), long-term historic (1869–1950), post-Mississippi River-Gulf Outlet (1950–2014), pre/post-Hurricane Katrina (2004–5), and recent (2005–14). In addition to shoreline change, barrier island geomorphology is evaluated using island area, elevation, and sediment volume change. In the long term (1869–2014), Breton Island was affected by landward transgression, island narrowing, and elevation loss. Major storm events exacerbated the long-term trends. In the recent period (2005–14), Breton Island eroded at a slower rate than in the long-term and gained area and total sediment volume. The recent accretion is likely because of the lack of major storms since Hurricane Katrina in 2005.

Camera system considerations for geomorphic applications of SfM photogrammetry

USGS Publications Warehouse

Mosbrucker, Adam; Major, Jon J.; Spicer, Kurt R.; Pitlick, John

2017-01-01

The availability of high-resolution, multi-temporal, remotely sensed topographic data is revolutionizing geomorphic analysis. Three-dimensional topographic point measurements acquired from structure-from-motion (SfM) photogrammetry have been shown to be highly accurate and cost-effective compared to laser-based alternatives in some environments. Use of consumer-grade digital cameras to generate terrain models and derivatives is becoming prevalent within the geomorphic community despite the details of these instruments being largely overlooked in current SfM literature. This article is protected by copyright. All rights reserved.A practical discussion of camera system selection, configuration, and image acquisition is presented. The hypothesis that optimizing source imagery can increase digital terrain model (DTM) accuracy is tested by evaluating accuracies of four SfM datasets conducted over multiple years of a gravel bed river floodplain using independent ground check points with the purpose of comparing morphological sediment budgets computed from SfM- and lidar-derived DTMs. Case study results are compared to existing SfM validation studies in an attempt to deconstruct the principle components of an SfM error budget. This article is protected by copyright. All rights reserved.Greater information capacity of source imagery was found to increase pixel matching quality, which produced 8 times greater point density and 6 times greater accuracy. When propagated through volumetric change analysis, individual DTM accuracy (6–37 cm) was sufficient to detect moderate geomorphic change (order 100,000 m3) on an unvegetated fluvial surface; change detection determined from repeat lidar and SfM surveys differed by about 10%. Simple camera selection criteria increased accuracy by 64%; configuration settings or image post-processing techniques increased point density by 5–25% and decreased processing time by 10–30%. This article is protected by copyright. All rights

Tectonic Signals Deduced from Quantitative Analysis of Geomorphic Parameters in Bedrock Rivers and Structural Mapping: A case study from the Surai Khola Siwalik Section, Nepalese Himalaya

NASA Astrophysics Data System (ADS)

Bhattarai, I.; Gani, N. D.

2016-12-01

The Nepalese Himalaya is one of the most active regions within the Himalayan Mountain Belt, which is characterized by a thick succession of Siwalik sedimentary rocks deposited at its foreland basin. To date, much of the tectonic geomorphologic study in the Nepalese Siwalik is poorly understood, particularly in the Surai Khola section. Thus, the study of quantitative analysis of bedrock river parameters will provide crucial information regarding tectonic activities in the area. This study investigates geomorphic parameters of longitudinal river profiles from 54 watersheds within the Siwalik section of the Nepalese Himalaya. We extracted a total of 140 bedrock rivers from these watersheds using stream power-law function and 30-meter resolution ASTER DEM. In addition, we used 90-meter resolution SRTM DEM for structural mapping within the Surai Khola section. Our new results show presence of major and minor knickpoints that were classified on the basis of relief of the longitudinal profiles. We identified 180 major knickpoints out of 305 total knickpoints. Normalized steepness index (ksn) and concavity index values vary above and below these knicpoints. The ksn values range from 5.3 to 140.6 while concavity index of the streams in the study area ranges from as low as -12.1 to as high as 31.1. We also identified a total of 133 structural lineations that were mapped for the first time using various sun illumination angles and azimuths, and slope. Most of these structural lineations are likely faults that follow the similar east-west trends of the Main Frontal Thrust (MFT) Fault. The length of these faults ranges from 0.5 km to 8 km. We interpreted that a few measured knickpoints might be associated with our mapped mesoscale faults, while the majority of the knickpoints in the river profiles are locally adjusting to the MFT related uplift.

Wet meadow ecosystems and the longevity of biologically-mediated geomorphic features

NASA Astrophysics Data System (ADS)

Nash, C.; Grant, G.; O'Connor, J. E.

2016-12-01

Upland meadows represent a ubiquitous feature of montane landscapes in the U.S. West and beyond. Characterized by flat valley floors flanked by higher-gradient hillslopes, these meadows are important features, both for the diverse ecosystems they support but also because they represent depositional features in what is primarily an erosional environment. As such, they serve as long-term chronometers of both geological and ecological processes in a portion of the landscape where such records are rare, and provide a useful microcosm for exploring many of the questions motivating critical zone science. Specifically, meadows can offer insights into questions regarding the longevity of theses biologically-mediated landscapes, and the geomorphic thresholds associated with transitions between metastable landscape states. Though categorically depositional, wet meadows have been shown to rapidly shift into erosional landscapes characterized by deep arroyos, declining water tables, and sparse, semi-arid ecosystems. Numerous hypotheses have been proposed explaining this shift: intensive ungulate usage, removal of beaver, climatic shifts, and intrinsic geomorphic evolution. Even less is known about the mechanisms controlling the construction of these meadow features. Evidence seems to suggest these channels oscillate between two metastable conditions: deeply incised, single-threaded channels and sheet-flow dominated valley-spanning wetlands. We present new evidence exploring the subsurface architecture of wet meadows and the bidirectional process cascades potentially responsible for their temporal evolution. Using a combination of near surface geophysical techniques and detailed stratigraphic descriptions of incised and un-incised meadows throughout the Silvies River Basin, OR, we examine mechanisms responsible both for the construction of these features and their apparently rapid transition from depositional to erosional. Our investigation focuses specifically on potential

The role of catastrophic geomorphic events in central Appalachian landscape evolution

USGS Publications Warehouse

Jacobson, R.B.; Miller, A.J.; Smith, J.A.

1989-01-01

Catastrophic geomorphic events are taken as those that are large, sudden, and rare on human timescales. In the nonglaciated, low-seismicity central Appalachians, these are dominantly floods and landslides. Evaluation of the role of catastrophic events in landscape evolution includes assessment of their contributions to denudation and formation of prominent landscape features, and how they vary through space and time. Tropical storm paths and topographic barriers at the Blue Ridge and Allegheny Front create significant climatic variability across the Appalachians. For moderate floods, the influence of basin geology is apparent in modifying severity of flooding, but for the most extreme events, flood discharges relate mainly to rainfall characteristics such as intensity, duration, storm size, and location. Landslide susceptibility relates more directly to geologic controls that determine what intensity and duration of rainfall will trigger slope instability. Large floods and landslides are not necessarily effective in producing prominent geomorphic features. Large historic floods in the Piedmont have been minimally effective in producing prominent and persistent geomorphic features. In contrast, smaller floods in the Valley and Ridge produced erosional and depositional features that probably will require thousands of years to efface. Scars and deposits of debris slide-avalanches triggered on sandstone ridges recover slowly and persist much longer than scars and deposits of smaller landslides triggered on finer-grained regolith, even though the smaller landslides may have eroded greater aggregate volume. The surficial stratigraphic record can be used to extend the spatial and temporal limits of our knowledge of catastrophic events. Many prominent alluvial and colluvial landforms in the central Appalachians are composed of sediments that were deposited by processes similar to those observed in historic catastrophic events. Available stratigraphic evidence shows two

Geomorphic responses of lower Bega River to catchment disturbance, 1851?1926

NASA Astrophysics Data System (ADS)

Brooks, Andrew P.; Brierley, Gary J.

1997-03-01

Prior to significant European settlement of the area in the 1850s, lower Bega River on the South Coast of NSW had a narrow, relatively deep channel lined by river oaks. The river had a suspended or mixed load, with platypus habitat available in pools. Banks were fine-grained and relatively cohesive (silts and clays), as was the floodplain, which graded to a series of valley-marginal swamps and lakes. Extensive evidence from maps and portion plans, archival photographs, bridge surveys, and anecdotal sources, complemented by field analysis of floodplain sedimentology (including radiocarbon-dated samples) and vegetation remnants are used to document the dramatic metamorphosis in the character and behaviour of lower Bega River in the latter half of the nineteenth century. By 1926 the channel had widened extensively (up to 340%) and shallowed in association with bed aggradation by coarse sandy bedload. Floodplain accretion was dominated by fine to medium sands, with some coarse sand splays. In contrast with most other studies of channel metamorphosis in Australia, which have emphasised river responses to climatically-induced flood histories, relegating human impacts to a secondary role, the profound changes to the geomorphic condition and behaviour of Bega River reflect indirect human disturbance of Bega catchment, and direct but non point source disturbance to the channel. Extensive clearance of catchment, floodplain, and channel-marginal vegetation occurred within a few decades of European settlement, altering the hydrologic and sediment regime of the river, and transforming the geomorphic effectiveness of floods. Although this study is situated in a relatively sensitive, granitic catchment, catchment clearance is likely to have induced equally significant responses in many other river systems in eastern Australia. In some instances the diffuse aspects of human disturbance on landscapes induce impacts on river character that are just as profound as major direct

Tapping into the Hexagon spy imagery database: A new automated pipeline for geomorphic change detection

NASA Astrophysics Data System (ADS)

Maurer, Joshua; Rupper, Summer

2015-10-01

Declassified historical imagery from the Hexagon spy satellite database has near-global coverage, yet remains a largely untapped resource for geomorphic change studies. Unavailable satellite ephemeris data make DEM (digital elevation model) extraction difficult in terms of time and accuracy. A new fully-automated pipeline for DEM extraction and image orthorectification is presented which yields accurate results and greatly increases efficiency over traditional photogrammetric methods, making the Hexagon image database much more appealing and accessible. A 1980 Hexagon DEM is extracted and geomorphic change computed for the Thistle Creek Landslide region in the Wasatch Range of North America to demonstrate an application of the new method. Surface elevation changes resulting from the landslide show an average elevation decrease of 14.4 ± 4.3 m in the source area, an increase of 17.6 ± 4.7 m in the deposition area, and a decrease of 30.2 ± 5.1 m resulting from a new roadcut. Two additional applications of the method include volume estimates of material excavated during the Mount St. Helens volcanic eruption and the volume of net ice loss over a 34-year period for glaciers in the Bhutanese Himalayas. These results show the value of Hexagon imagery in detecting and quantifying historical geomorphic change, especially in regions where other data sources are limited.

The Geomorphic Road Analysis and Inventory Package (GRAIP) Volume 2: Office Procedures

Treesearch

Richard M. Cissel; Thomas A. Black; Kimberly A. T. Schreuders; Ajay Prasad; Charles H. Luce; David G. Tarboton; Nathan A. Nelson

2012-01-01

An important first step in managing forest roads for improved water quality and aquatic habitat is the performance of an inventory. The Geomorphic Roads Analysis and Inventory Package (GRAIP) was developed as a tool for making a comprehensive inventory and analysis of the effects of forest roads on watersheds. This manual describes the data analysis and process of a...

REGIONAL RELATIONSHIPS BETWEEN GEOMORPHIC/HYDROLOGIC PARAMETERS AND SURFACE WATER CHEMISTRY RELATIVE TO ACIDIC DEPOSITION

EPA Science Inventory

We determined geomorphic and hydrologic parameters for 144 forested, lake watersheds in the Northeast (NE) of the United States based primarily on measurements from topographic maps. hese parameters were used to test for relationships with selected surface water chemistry relevan...

Geomorphic domains and linear features on Landsat images, Circle Quadrangle, Alaska

USGS Publications Warehouse

Simpson, S.L.

1984-01-01

A remote sensing study using Landsat images was undertaken as part of the Alaska Mineral Resource Assessment Program (AMRAP). Geomorphic domains A and B, identified on enhanced Landsat images, divide Circle quadrangle south of Tintina fault zone into two regional areas having major differences in surface characteristics. Domain A is a roughly rectangular, northeast-trending area of relatively low relief and simple, widely spaced drainages, except where igneous rocks are exposed. In contrast, domain B, which bounds two sides of domain A, is more intricately dissected showing abrupt changes in slope and relatively high relief. The northwestern part of geomorphic domain A includes a previously mapped tectonostratigraphic terrane. The southeastern boundary of domain A occurs entirely within the adjoining tectonostratigraphic terrane. The sharp geomorphic contrast along the southeastern boundary of domain A and the existence of known faults along this boundary suggest that the southeastern part of domain A may be a subdivision of the adjoining terrane. Detailed field studies would be necessary to determine the characteristics of the subdivision. Domain B appears to be divisible into large areas of different geomorphic terrains by east-northeast-trending curvilinear lines drawn on Landsat images. Segments of two of these lines correlate with parts of boundaries of mapped tectonostratigraphic terranes. On Landsat images prominent north-trending lineaments together with the curvilinear lines form a large-scale regional pattern that is transected by mapped north-northeast-trending high-angle faults. The lineaments indicate possible lithlogic variations and/or structural boundaries. A statistical strike-frequency analysis of the linear features data for Circle quadrangle shows that northeast-trending linear features predominate throughout, and that most northwest-trending linear features are found south of Tintina fault zone. A major trend interval of N.64-72E. in the linear

OdorMapComparer: an application for quantitative analyses and comparisons of fMRI brain odor maps.

PubMed

Liu, Nian; Xu, Fuqiang; Miller, Perry L; Shepherd, Gordon M

2007-01-01

Brain odor maps are reconstructed flat images that describe the spatial activity patterns in the glomerular layer of the olfactory bulbs in animals exposed to different odor stimuli. We have developed a software application, OdorMapComparer, to carry out quantitative analyses and comparisons of the fMRI odor maps. This application is an open-source window program that first loads two odor map images being compared. It allows image transformations including scaling, flipping, rotating, and warping so that the two images can be appropriately aligned to each other. It performs simple subtraction, addition, and average of signals in the two images. It also provides comparative statistics including the normalized correlation (NC) and spatial correlation coefficient. Experimental studies showed that the rodent fMRI odor maps for aliphatic aldehydes displayed spatial activity patterns that are similar in gross outlines but somewhat different in specific subregions. Analyses with OdorMapComparer indicate that the similarity between odor maps decreases with increasing difference in the length of carbon chains. For example, the map of butanal is more closely related to that of pentanal (with a NC = 0.617) than to that of octanal (NC = 0.082), which is consistent with animal behavioral studies. The study also indicates that fMRI odor maps are statistically odor-specific and repeatable across both the intra- and intersubject trials. OdorMapComparer thus provides a tool for quantitative, statistical analyses and comparisons of fMRI odor maps in a fashion that is integrated with the overall odor mapping techniques.

Geomorphic and hydraulic assessment of the Bear River in and near Evanston, Wyoming

USGS Publications Warehouse

Smith, M.E.; Maderak, M.L.

1993-01-01

Geomorphic and hydraulic characteristics of the Bear River in and near Evanston, Wyoming, were assessed to assist planners in stabilizing the river channel. Present-day channel instability is the result of both human-made and natural factors. The primary factor is channelization of the river in Evanston, where several meander loops were cut off artificially during early development of the city. Other contributing factors include channel-width constrictions, bank stabilization, isolated bend cutoffs upstream from the city, and flooding in 1983 and 1984. A geomorphic analysis of bankfull-channel pattern, based on four aerial photographs taken during 1946-86, quantified geomorphic properties (reach sinuosity, bend sinuosity, bend radius of curvature, and bed length) that are characteristic of the study reach. The reach sinuosity of reach 2 (the channelized reach in Evanston) was 1.18 in 1986 and remained about the same throughout the period (1946-86). The reach sinuosity of reach 2 prior to channelization was substantially larger, about 2.3 as determined from maps prepared before 1946. Hydraulic analysis of the present-day channel (surveyed 1981-87) using a one-dimensional water-surface-profile computer model identified a bankfull discharge for the study reach of 3,600 cu ft/sec. A comparison of bankfull hydraulic properties for reaches 1, 2, and 3 indicated that the effects in reach 2 of channelization and channel-width constriction--increased slope, faster velocities, and greater hydraulic radii. The present-day channel slope in reach 2 is 0.00518 ft/ft, whereas a more stable slope would be between 0.00431 ft/ft (present-day slope in reach 1) and 0.00486 ft/ft (present-day slope in reach 3).

Improving dust emission characterization in dust models using dynamic high-resolution geomorphic erodibility map

NASA Astrophysics Data System (ADS)

Parajuli, S. P.; Yang, Z.; Kocurek, G.

2013-12-01

Dust is known to affect the earth radiation budget, biogeochemical cycle, precipitation, human health and visibility. Despite the increased research effort, dust emission modeling remains challenging because dust emission is affected by complex geomorphological processes. Existing dust models overestimate dust emission and rely on tuning and a static erodibility factor in order to make simulated results comparable to remote sensing and ground-based observations. In most of current models, dust emission is expressed in terms of threshold friction speed, which ultimately depends mainly upon the percentage clay content and soil moisture. Unfortunately, due to the unavailability of accurate and high resolution input data of the clay content and soil moisture, estimated threshold friction speed commonly does not represent the variability in field condition. In this work, we attempt to improve dust emission characterization by developing a high resolution geomorphic map of the Middle East and North Africa (MENA), which is responsible for more than 50% of global dust emission. We develop this geomorphic map by visually examining high resolution satellite images obtained from Google Earth Pro and ESRI base map. Albeit subjective, our technique is more reliable compared to automatic image classification technique because we incorporate knowledge of geological/geographical setting in identifying dust sources. We hypothesize that the erodibility is unique for different geomorphic landforms and that it can be quantified by the correlation between observed wind speed and satellite retrieved aerosol optical depth (AOD). We classify the study area into several key geomorphological categories with respect to their dust emission potential. Then we quantify their dust emission potential using the correlation between observed wind speed and satellite retrieved AOD. The dynamic, high-resolution geomorphic erodibility map thus prepared will help to reduce the uncertainty in current

Qualitative and quantitative analyses of flavonoids in Spirodela polyrrhiza by high-performance liquid chromatography coupled with mass spectrometry.

PubMed

Qiao, Xue; He, Wen-ni; Xiang, Cheng; Han, Jian; Wu, Li-jun; Guo, De-an; Ye, Min

2011-01-01

Spirodela polyrrhiza (L.) Schleid. is a traditional Chinese herbal medicine for the treatment of influenza. Despite its wide use in Chinese medicine, no report on quality control of this herb is available so far. To establish qualitative and quantitative analytical methods by high-performance liquid chromatography (HPLC) coupled with mass spectrometry (MS) for the quality control of S. polyrrhiza. The methanol extract of S. polyrrhiza was analysed by HPLC/ESI-MS(n). Flavonoids were identified by comparing with reference standards or according to their MS(n) (n = 2-4) fragmentation behaviours. Based on LC/MS data, a standardised HPLC fingerprint was established by analysing 15 batches of commercial herbal samples. Furthermore, quantitative analysis was conducted by determining five major flavonoids, namely luteolin 8-C-glucoside, apigenin 8-C-glucoside, luteolin 7-O-glucoside, apigenin 7-O-glucoside and luteolin. A total of 18 flavonoids were identified by LC/MS, and 14 of them were reported from this herb for the first time. The HPLC fingerprints contained 10 common peaks, and could differentiate good quality batches from counterfeits. The total contents of five major flavonoids in S. polyrrhiza varied significantly from 4.28 to 19.87 mg/g. Qualitative LC/MS and quantitative HPLC analytical methods were established for the comprehensive quality control of S. polyrrhiza. Copyright © 2011 John Wiley & Sons, Ltd.

Using Geomorphic Change Detection to Understand Restoration Project Success Relative to Stream Size

NASA Astrophysics Data System (ADS)

Yeager, A.; Segura, C.

2017-12-01

Large wood (LW) jams have long been utilized as a stream restoration strategy to create fish habitat, with a strong focus on Coho salmon in the Pacific Northwest. These projects continue to be implemented despite limited understanding of their success in streams of different size. In this study, we assessed the changes triggered by LW introductions in 10 alluvial plane bed reaches with varying drainage areas (3.9-22 km²) and bankfull widths (6.4-14.7 m) in one Oregon Coast Range basin. In this basin, LW was added in an effort to improve winter rearing habitat for Coho salmon. We used detailed topographic mapping (0.5 m² resolution) to describe the local stream and floodplain geometry. Pebble counts were used to monitor changes in average substrate size after the LW addition. Field surveys were conducted immediately after the LW were installed, in the summer of 2016, and one year after installation, in the summer of 2017. We used geomorphic change detection analysis to quantify the amount of scour and deposition at each site along with changes in average bankfull width. Then we determined the relative amount of change among all sites to identify which size stream changed the most. We also modeled fluctuations in water surface elevation at each site, correlating frequency and inundation of the LW with geomorphic changes detected from the topographic surveys. Preliminary results show an increase in channel width and floodplain connectivity at all sites, indicating an increase in off-channel habitat for juvenile Coho salmon. Bankfull widths increased up to 75% in small sites and up to 25% in large sites. Median grain size became coarser in large streams (increased up to 20%), while we saw a similar amount of fining at smaller sites. The overall increase in channel width is compensated by an overall decrease in bed elevation at both large and small sites, suggesting the maintenance of overall geomorphic equilibrium. Further work will include quantifying these

Investigation of the geologic setting and geomorphic processes that control the formation and preservation of precarious rock zones

NASA Astrophysics Data System (ADS)

Haddad, D.; Arrowsmith, R.

2008-12-01

Zones of precariously balanced rocks have been used as negative indicators of previous strong ground motion in seismically active regions of Southern California and Nevada (e.g. Brune 1996). Understanding the geologic context and the geomorphic framework that control the formation and preservation of precarious rocks is essential to testing their fidelity for extreme ground motion analyses. In this study we assess the geologic settings and the geomorphic processes nested within them using precarious rock zones (Granite Dells, Texas Canyon, and Granite Pediment) in low-seismicity regions of Arizona and Southern California. The Granite Dells locality is a ~20 km2 Proterozoic granite field that is ~5 km from the Prescott Valley graben faults (<0.2 mm/yr of Quaternary slip). The Texas Canyon locality is a ~132 km2 Mesozoic granite field that is ~23 km from the Little Rincon Mountains fault (<0.2 mm/yr of Quaternary slip). The Granite Pediment locality is a ~12 km2 Mesozoic granite pediment located ~96 km from the eastern section of the Garlock fault (<5 mm/yr of Quaternary slip). Characterization of the geologic context of each site included assembling a digital geologic database for Arizona, Southern California, and southern Nevada. The geologic database was queried for granitic bodies and Quaternary deposits. Active faults were categorized by their Quaternary slip rates, and a 20 km zone of no precarious rocks was created around each active fault based on the field surveys of Brune (1996). Aerial photographs were used to map the spatial distribution and geometry of joint sets within each site. Ground surveys using hand-held GPS units and digital photography were conducted to document the characteristics (lithology, size, fragility, weathering characteristics) and spatial density of precariously balanced rocks. Morphometric analyses of digital elevation data may indicate if there is a slope or relief range which the precarious rocks are optimally produced and

Microbial Biomass and Activity in Geomorphic Features in Forested and Urban Restored and Degraded Streams

EPA Science Inventory

Geomorphic spatial heterogeneity affects sediment denitrification, an anaerobic microbial process that results in the loss of nitrogen (N), and other anaerobic microbial processes such as methanogenesis in urban streams. We measured sediment denitrification potential (DEA), metha...

The geomorphic effect of recent storms - Quantifying meso scale abrasion across a shore platform

NASA Astrophysics Data System (ADS)

Cullen, Niamh; Bourke, Mary; Naylor, Larissa

2017-04-01

Boulder abrasion trails (BATs) are lineations on the surface of rock platforms formed by the movement of traction-load clasts by waves. They have been observed on a variety of platform lithologies, including limestone, granite and basalt. Despite previous reporting of these features, the abrasion styles and geomorphic work done by boulder transport has not been quantified. We present the first quantitative measurement of shore platform erosion by boulder transport during extreme storms that occurred in the winter of 2015-2016. Following two storm events in 2016 we mapped and measured 33 individual BATs on a sandstone platform on the west coast of Ireland. The total (minimum) abraded surface area was 10m2. The total (minimum) volume of material abraded was 0.2m3. In order to test the efficacy of this process during non-storm conditions we conducted field experiments on the same platform. We identified two sites on the platform that were similar, but differed in their intertidal roughness. We installed an RBR solo wave pressure transducer (PT) at 0m OD at both locations to record wave data. We measured platform roughness, determined as the fractal dimension of the platform profiles at both sites. We deployed an array of boulders of known dimensions and mass, parallel to the shoreline at 0.5m intervals from the PTs. The experiments were conducted 1. during relatively calm conditions and 2. during higher energy conditions. Data was collected for one tidal cycle. Any boulder displacement distance and direction was measured and geomorphic effects were documented. We find that BATs are formed under a range of wave energy conditions. Our observations indicate that along the North Atlantic coastline, BATs can occur at a high frequency, only limited by sediment supply. Our data show that abrasion by boulder transport is a potentially significant geomorphological process acting to abrade platforms under contemporary climate conditions. In addition, our preliminary findings

Geomorphic Controls on Aquifer Geometry in Northwestern India

NASA Astrophysics Data System (ADS)

van Dijk, W. M.; Densmore, A. L.; Sinha, R.; Gupta, S.; Mason, P. J.; Singh, A.; Joshi, S. K.; Nayak, N.; Kumar, M.; Shekhar, S.

2014-12-01

The Indo-Gangetic foreland basin suffers from one of the highest rates of groundwater extraction in the world, especially in the Indian states of Punjab, Haryana and Rajasthan. To understand the effects of this extraction on ground water levels, we must first understand the geometry and sedimentary architecture of the aquifer system, which in turn depend upon its geomorphic setting. We use satellite images and digital elevation models to map the geomorphology of the Sutlej and Yamuna river systems, while aquifer geometry is assessed using ~250 wells that extend to ~300 m depth in Punjab and Haryana. The Sutlej and Yamuna rivers have deposited large sedimentary fans at their outlets. Elongate downslope ridges on the fan surfaces form distributary networks that radiate from the Sutlej and Yamuna fan apices, and we interpret these ridges as paleochannel deposits associated with discrete fan lobes. Paleochannels picked out by soil moisture variations illustrate a complex late Quaternary history of channel avulsion and incision, probably associated with variations in monsoon intensity. Aquifer bodies on the Sutlej and Yamuna fans have a median thickness of 7 and 6 m, respectively, and follow a heavy-tailed distribution, probably because of stacked sand bodies. The percentage of aquifer material in individual lithologs decreases downstream, although the exponent on the thickness distribution remains the same, indicating that aquifer bodies decrease in number down fan but do not thin appreciably. Critically, the interfan area between the Sutlej and Yamuna fans has thinner aquifers and a lower proportion of aquifer material, despite its proximal location. Our data show that the Sutlej and Yamuna fan systems form the major aquifer systems in this area, and that their geomorphic setting therefore provides a first-order control on aquifer distribution and geometry. The large spatial heterogeneity of the system must be considered in any future aquifer management scheme.

Variability in fluvial geomorphic response to anthropogenic disturbance

NASA Astrophysics Data System (ADS)

Verstraeten, Gert; Broothaerts, Nils; Van Loo, Maarten; Notebaert, Bastiaan; D'Haen, Koen; Dusar, Bert; De Brue, Hanne

2017-10-01

Humans have greatly impacted the processes and intensities of erosion, sediment transport and storage since the introduction of agriculture. In many regions around the world, accelerated floodplain sedimentation can be related to increases in human pressure on the environment. However, the relation between the intensity of anthropogenic disturbance and the magnitude of change in fluvial sediment dynamics is not straightforward and often non-linear. Here, we review a number of case studies from contrasting environmental settings in the European loess belt, the Eastern Mediterranean mountain ranges and the eastern USA. Detailed field-based sediment archive studies and sediment budgets covering time periods ranging from 200 to over 5000 year, as well as the use of pollen and sediment provenance techniques, show that no overarching concept of changes in floodplain sedimentation following anthropogenic disturbance can be established. Slope-channel (dis)connectivity controls the existence of thresholds or tipping points that need to be crossed before significant changes in downstream sediment dynamics are recorded following human impact. This coupling can be related to characteristics of human pressure such as its duration, intensity and spatial patterns, but also to the geomorphic and tectonic setting. Furthermore, internal feedback mechanisms, such as those between erosion and soil thickness, further complicate the story. All these factors controlling the propagation of sediment from eroding hillslopes to river channels vary between regions. Hence, only unique patterns of fluvial geomorphic response can be identified. As a result, unravelling the human impact from current-day sediment archives and predicting the impact of future human disturbances on fluvial sediment dynamics remain a major challenge. This has important implications for interpreting contemporary sediment yields as well as downstream sediment records in large floodplains, deltas and the marine

Quantitative Analyse und Visualisierung der Herzfunktionen

NASA Astrophysics Data System (ADS)

Sauer, Anne; Schwarz, Tobias; Engel, Nicole; Seitel, Mathias; Kenngott, Hannes; Mohrhardt, Carsten; Loßnitzer, Dirk; Giannitsis, Evangelos; Katus, Hugo A.; Meinzer, Hans-Peter

Die computergestützte bildbasierte Analyse der Herzfunktionen ist mittlerweile Standard in der Kardiologie. Die verfügbaren Produkte erfordern meist ein hohes Maß an Benutzerinteraktion und somit einen erhöhten Zeitaufwand. In dieser Arbeit wird ein Ansatz vorgestellt, der dem Kardiologen eine größtenteils automatische Analyse der Herzfunktionen mittels MRT-Bilddaten ermöglicht und damit Zeitersparnis schafft. Hierbei werden alle relevanten herzphysiologsichen Parameter berechnet und mithilfe von Diagrammen und Graphen visualisiert. Diese Berechnungen werden evaluiert, indem die ermittelten Werte mit manuell vermessenen verglichen werden. Der hierbei berechnete mittlere Fehler liegt mit 2,85 mm für die Wanddicke und 1,61 mm für die Wanddickenzunahme immer noch im Bereich einer Pixelgrösse der verwendeten Bilder.

Unraveling the controls on biogeomorphic succession: the influence of groundwater, soil and geomorphic setting on bio-geomorphic channel evolution

NASA Astrophysics Data System (ADS)

Bätz, Nico; Verrecchia, Eric P.; Lane, Stuart N.

2017-04-01

Braided rivers are characterized by high rates of morphological change. However, despite the potential for frequent disturbance, vegetated patches may develop within this system and influence long-term channel dynamics and channel patterns through the "engineering effects" of biogeomorphic succession. The stabilizing effect of developing vegetation on morphological change has been widely shown by flume experiments and (historic) aerial pictures analysis. Thus, there is a balance between disturbance and stabilization, mediated through biogeomorphic succession, that may determine the long-term geomorphic and biogeomorphic evolution of the river. Research has addressed how changes in disturbance frequency affect river channel pattern, but much less has been done to understand what influences the rate of biogeomorphic succession and how it affects river morphodynamics. This study explores the complex pattern of ambient conditions in braided river systems driving the rate of biogeomorphic succession. In particular, we focus on the interplay between groundwater access, soil formation, disturbance frequency and geomorphic setting, in defining what drives vegetation succession rates and its long-term implications on channel pattern evolution. We studied these feedbacks in a transitional gravel-bed river system (braided, wandering, meandering) close to Geneva (Switzerland) - the Allondon River. Results show that, at the beginning of the succession, humification plays a negative role on local ambient conditions necessary for sprouting. Successful vegetation establishment is then related positively to humification, but also to higher disturbance rates. The third biogeomorphic phase, with the highest feedbacks on river morphology, appears to be mainly driven by groundwater access, which in turn defines the rates of humification in this gravelly environment. This in turn defines the decadal morphological response of the channel after a reduction in disturbance frequency over

Quantifying and Validating Rapid Floodplain Geomorphic Evolution, a Monitoring and Modelling Case Study

NASA Astrophysics Data System (ADS)

Scott, R.; Entwistle, N. S.

2017-12-01

Gravel bed rivers and their associated wider systems present an ideal subject for development and improvement of rapid monitoring tools, with features dynamic enough to evolve within relatively short-term timescales. For detecting and quantifying topographical evolution, UAV based remote sensing has manifested as a reliable, low cost, and accurate means of topographic data collection. Here we present some validated methodologies for detection of geomorphic change at resolutions down to 0.05 m, building on the work of Wheaton et al. (2009) and Milan et al. (2007), to generate mesh based and pointcloud comparison data to produce a reliable picture of topographic evolution. Results are presented for the River Glen, Northumberland, UK. Recent channel avulsion and floodplain interaction, resulting in damage to flood defence structures make this site a particularly suitable case for application of geomorphic change detection methods, with the UAV platform at its centre. We compare multi-temporal, high-resolution point clouds derived from SfM processing, cross referenced with aerial LiDAR data, over a 1.5 km reach of the watercourse. Changes detected included bank erosion, bar and splay deposition, vegetation stripping and incipient channel avulsion. Utilisation of the topographic data for numerical modelling, carried out using CAESAR-Lisflood predicted the avulsion of the main channel, resulting in erosion of and potentially complete circumvention of original channel and flood levees. A subsequent UAV survey highlighted topographic change and reconfiguration of the local sedimentary conveyor as we predicted with preliminary modelling. The combined monitoring and modelling approach has allowed probable future geomorphic configurations to be predicted permitting more informed implementation of channel and floodplain management strategies.

Geomorphic and habitat response to a large-dam removal in a Mediterranean river

NASA Astrophysics Data System (ADS)

Harrison, L.; East, A. E.; Smith, D. P.; Bond, R.; Logan, J. B.; Nicol, C.; Williams, T.; Boughton, D. A.; Chow, K.

2017-12-01

The presence of large dams has fundamentally altered physical and biological processes in riverine ecosystems, and dam removal is becoming more common as a river restoration strategy. We used a before-after-control-impact study design to investigate the geomorphic and habitat response to removal of 32-m-high San Clemente Dam on the Carmel River, CA. The project represents the first major dam removal in a Mediterranean river and is also unique among large dam removals in that most reservoir sediment was sequestered in place. We found that in the first year post-removal, a sediment pulse migrated 3.5 km downstream, filling pools and the interstitial pore spaces of gravels with sand. These sedimentary and topographic changes initially reduced the overall quality of steelhead (O. mykiss) spawning and rearing habitat in impacted reaches. Over the second winter after dam removal, a sequence of high flows flushed large volumes of sand from pools and mobilized the river bed throughout much of the active channel. The floods substantially altered fluvial evolution in the upper part of the reservoir, promoting new avulsion and the subsequent delivery of gravel and large wood to below dam reaches. These geomorphic processes increased the availability of spawning-sized gravel and enhanced channel complexity in reaches within several km of the former dam, which should improve habitat for multiple life stages of steelhead. Results indicate that when most reservoir sediment remains impounded, high flows become more important drivers of geomorphic and habitat change than dam removal alone. In such cases, the rates at which biophysical processes are reestablished will depend largely on post-dam removal flow sequencing and the upstream supply of sediment and large wood.

Geomorphic adjustment to hydrologic modifications along a meandering river: Implications for surface flooding on a floodplain

NASA Astrophysics Data System (ADS)

Edwards, Brandon L.; Keim, Richard F.; Johnson, Erin L.; Hupp, Cliff R.; Marre, Saraline; King, Sammy L.

2016-09-01

Responses of large regulated rivers to contemporary changes in base level are not well understood. We used field measurements and historical analysis of air photos and topographic maps to identify geomorphic trends of the lower White River, Arkansas, USA, in the 70 years following base-level lowering at its confluence with the Mississippi River and concurrent with flood control by dams. Incision was identified below a knickpoint area upstream of St. Charles, AR, and increases over the lowermost 90 km of the study site to 2 m near the confluence with the Mississippi River. Mean bankfull width increased by 30 m (21%) from 1930 to 2010. Bank widening appears to be the result of flow regulation above the incision knickpoint and concomitant with incision below the knickpoint. Hydraulic modeling indicated that geomorphic adjustments likely reduced flooding by 58% during frequent floods in the incised, lowermost floodplain affected by backwater flooding from the Mississippi River and by 22% above the knickpoint area. Dominance of backwater flooding in the incised reach indicates that incision is more important than flood control on the lower White River in altering flooding and also suggests that the Mississippi River may be the dominant control in shaping the lower floodplain. Overall, results highlight the complex geomorphic adjustment in large river-floodplain systems in response to anthropogenic modifications and their implications, including reduced river-floodplain connectivity.

Quantitative analyses of the 3D nuclear landscape recorded with super-resolved fluorescence microscopy.

PubMed

Schmid, Volker J; Cremer, Marion; Cremer, Thomas

2017-07-01

Recent advancements of super-resolved fluorescence microscopy have revolutionized microscopic studies of cells, including the exceedingly complex structural organization of cell nuclei in space and time. In this paper we describe and discuss tools for (semi-) automated, quantitative 3D analyses of the spatial nuclear organization. These tools allow the quantitative assessment of highly resolved different chromatin compaction levels in individual cell nuclei, which reflect functionally different regions or sub-compartments of the 3D nuclear landscape, and measurements of absolute distances between sites of different chromatin compaction. In addition, these tools allow 3D mapping of specific DNA/RNA sequences and nuclear proteins relative to the 3D chromatin compaction maps and comparisons of multiple cell nuclei. The tools are available in the free and open source R packages nucim and bioimagetools. We discuss the use of masks for the segmentation of nuclei and the use of DNA stains, such as DAPI, as a proxy for local differences in chromatin compaction. We further discuss the limitations of 3D maps of the nuclear landscape as well as problems of the biological interpretation of such data. Copyright © 2017 Elsevier Inc. All rights reserved.

Applying dam height-storage curve to geomorphic features analysis within virtual geographic environment: a case study of the Hong-Shi-Mao watershed

NASA Astrophysics Data System (ADS)

Wang, Daojun; Gong, Jianhua; Ma, Ainai; Li, Wenhang; Wang, Xijun

2005-10-01

There are generally two kinds of approaches to studying geomorphic features in terms of the quantification level and difference of major considerations. One is the earlier qualitative characterization, and the other is the 2-dimension measurement that includes section pattern and projection pattern. With the development of geo-information technology, especially the 3-D geo-visualization and virtual geographic environments (VGE), 3-dimension measurement and dynamic interactive between users and geo-data/geo-graphics can be developed to understand geomorphic features deeply, and to benefit to the effective applications of such features for geographic projects like dam construction. Storage-elevation curve is very useful for site selection of projects and flood dispatching in water conservancy region, but it is just a tool querying one value from the other one. In fact, storage-elevation curve can represent comprehensively the geomorphic features including vertical section, cross section of the stream and the landform nearby. In this paper, we use quadratic regression equation shaped like y = ax2 + bx + c and the DEM data of Hong-Shi-Mao watershed, Zi Chang County, ShaanXi Province, China to find out the relationship between the coefficients of the equation and the geomorphic features based on VGE platform. It's exciting that the coefficient "a" appear to be correlative strongly with the stream scale, and the coefficient "b" may give an index to the valley shape. In the end, we use a sub-basin named Hao-Jia-Gou of the watershed as an application. The result of correlative research about quadratic regression equation and geomorphic features can save computing and improve the efficiency in silt dam systems planning.

Effect of Sediment Availability in Bedload-Dominated Rivers on Fluvial Geomorphic Equilibrium

NASA Astrophysics Data System (ADS)

Marti, M.

2016-12-01

Channels are known to compensate for changes in sediment supply via covariate changes in channel properties, yet the timescale for adjustment remains poorly constrained. We propose that reductions in sediment flux inhibit equilibrium re-establishment and thus impact the timescale of system adjustment. Using run-of-river dams as natural experiments, this study quantifies the geomorphic response of channels to sediment supply reduction. Channel traits that facilitate increased sediment trapping behind the dam, such as large reservoir storage capacity relative to annual inflow and low slope, were expected to inhibit a channel's ability to re-establish equilibrium following impoundment, lengthening the equilibrium establishment timescale to tens or hundreds of years. Reaches associated with increased trapping were therefore anticipated to exhibit non-equilibrium forms. Channel equilibrium was evaluated downstream of 8 ROR dams in New England with varying degrees of sediment trapping. Sites cover a range of watershed sizes (3-155 km2), channel slopes (.05-5%), 2-year discharges (1.5-60 m3/s) and storage capacity volumes. Because equilibrium channel form is just sufficient to mobilize grains under bankfull conditions in bedload-dominated rivers, the Shields parameter was used to assess equilibrium form. Unregulated, upstream Shields values and regulated, downstream values were calculated at 14 total cross-sections extending 300-450 m upstream and downstream of each dam. Sediment trapping was estimated using Brune's curve (1953). On the Charles Brown Brook (VT), a marginally significant (p=0.08) increase in Shields values from a mean of 0.14 upstream to 0.41 downstream of a 100+ year old dam was observed. In contrast, reaches downstream of the 100+ year old Pelham dam (MA) exhibit significantly lower Shields values. This suggests that trapping behind the dam inhibits the downstream channel from reaching an equilibrium state, but not always in the same way. Better

Improving Short Term Instability for Quantitative Analyses with Portable Electronic Noses

PubMed Central

Macías, Miguel Macías; Agudo, J. Enrique; Manso, Antonio García; Orellana, Carlos Javier García; Velasco, Horacio Manuel González; Caballero, Ramón Gallardo

2014-01-01

One of the main problems when working with electronic noses is the lack of reproducibility or repeatability of the sensor response, so that, if this problem is not properly considered, electronic noses can be useless, especially for quantitative analyses. On the other hand, irreproducibility is increased with portable and low cost electronic noses where laboratory equipment like gas zero generators cannot be used. In this work, we study the reproducibility of two portable electronic noses, the PEN3 (commercial) and CAPINose (a proprietary design) by using synthetic wine samples. We show that in both cases short term instability associated to the sensors' response to the same sample and under the same conditions represents a major problem and we propose an internal normalization technique that, in both cases, reduces the variability of the sensors' response. Finally, we show that the normalization proposed seems to be more effective in the CAPINose case, reducing, for example, the variability associated to the TGS2602 sensor from 12.19% to 2.2%. PMID:24932869

Application of Terrestrial Geomorphic Threshold Theory to the Analysis of Small Channels on Mars

NASA Technical Reports Server (NTRS)

Rosenshein, E. B.; Greeley, R.; Arrowsmith, J. R.

2001-01-01

New terrestrial work on the geomorphic thresholds for channel initiation use the drainage area above a channel head vs. the slope at the channel head to delineate surface process types. This method has been used to characterize martian landscapes. Additional information is contained in the original extended abstract.

The Geomorphic Road Analysis and Inventory Package (GRAIP) Volume 1: Data Collection Method

Treesearch

Thomas A. Black; Richard M. Cissel; Charles H. Luce

2012-01-01

An important first step in managing forest roads for improved water quality and aquatic habitat is the performance of an inventory. The Geomorphic Roads Analysis and Inventory Package (GRAIP) was developed as a tool for making a comprehensive inventory and analysis of the effects of forest roads on watersheds. This manual describes the data collection and process of a...

Geomorphic and geologic evidence for slip along the San Bernardino strand of the San Andreas Fault System through the San Gorgonio Pass structural knot, southern California

NASA Astrophysics Data System (ADS)

Kendrick, K. J.; Matti, J. C.

2017-12-01

The San Gorgonio Pass (SGP) region of southern California represents an extraordinarily complex section of the San Andreas Fault (SAF) zone, often referred to as a structural knot. Complexity is expressed both structurally and geomorphically, and arises because multiple strands of the SAF have evolved here in Quaternary time. Our integration of geologic and geomorphic analyses led to recognition of multiple fault-bounded blocks characterized by crystalline rocks that have similar physical properties. Hence, any morphometric differences in hypsometric analysis, slope, slope distribution, texture, and stream-power measurements and discontinuities reflect landscape response to tectonic processes rather than differences in lithology. We propose that the differing morphometry of the two blocks on either side of the San Bernardino strand (SBS) of the SAF, the high-standing Kitching Peak block to the east and the lower, more subdued Pisgah Peak block to the west, strongly suggests that the blocks experienced different uplift histories. This difference in uplift histories, in turn suggests that dextral slip occurred over a long time interval on the SBS—despite long-lived controversy raised by the fact that, at the surface, a throughgoing trace of the SBS is not present at this location. A different tectonic history between the two blocks is consistent with the gravity data which indicate that low-density rocks underthrusting the Kitching Peak block are absent below the Pisgah Peak block (Langenheim et al., 2015). Throughgoing slip on the SBS implied by geomorphic differences between the two blocks is also consistent with displaced geologic and geomorphic features. We find compelling evidence for discrete offsets of between 0.6 and 6 km of dextral slip on the SBS, including offset of fluvial and landslide deposits, and beheaded drainages. Although we lack numerical age control for the offset features, the degree of soil development associated with displaced landforms

Geomorphic controls on fluvial carbon exports and emissions from upland swamps in eastern Australia.

PubMed

Cowley, Kirsten; Looman, Arun; Maher, Damien T; Fryirs, Kirstie

2018-03-15

Temperate Highland Peat Swamps on Sandstone (THPSS) are upland wetlands, similar to fens in the Northern Hemisphere and are found at the headwaters of low-order streams on the plateaus of Eastern Australia. They are classified as endangered ecological communities under State and National legislation. Previous works have identified particular geomorphic characteristics that are important to carbon storage in these low energy sediment accumulation zones. Changes in the geomorphic structure of THPSS, such as channelisation, may have profound implications for carbon storage. To assess the effect of channelisation on carbon budgets in these ecosystems it is essential to identify and quantify differences in carbon export, emissions and stocks of carbon of intact swamps and those that have become channelised. We undertook seasonal sampling of the perched swamp aquifers and surface waters of two intact swamps and two channelised fills in the Blue Mountains of New South Wales, Australia, to investigate differences in carbon exports and emissions between the two swamp types. We found that channelised fills' mean CO 2 emissions were almost four times higher than intact swamps with mean CH 4 emissions up to five times higher. Annual fluvial carbon exports for channelised fills were up to 18 times that of intact swamps. Channelised fill exports and emissions can represent up to 2% of the total swamp carbon stocks per annum which is 40 times higher than the intact swamps. This work clearly demonstrates that changes in geomorphic structure brought about by incision and channelisation results in profound changes to the carbon storage function of THPSS. Copyright © 2017 Elsevier B.V. All rights reserved.

The application of remotely sensed data to pedologic and geomorphic mapping on alluvial fan and playa surfaces in Saline Valley, California

NASA Technical Reports Server (NTRS)

Miller, D. A.; Petersen, G. W.; Kahle, A. B.

1986-01-01

Arid and semiarid regions yield excellent opportunities for the study of pedologic and geomorphic processes. The dominance of rock and soil exposure over vegetation not only provides the ground observer with observational possibilities but also affords good opportunities for measurement by aircraft and satellite remote sensor devices. Previous studies conducted in the area of pedologic and geomorphic mapping in arid regions with remotely sensed data have utilized information obtained in the visible to near-infrared portion of the spectrum. Thermal Infrared Multispectral Scanner (TIMS) and Thematic Mapping (TM) data collected in 1984 are being used in comjunction with maps compiled during a Bureau of Land Management (BLM) soil survey to aid in a detailed mapping of alluvial fan and playa surfaces within the valley. The results from this study may yield valuable information concerning the application of thermal data and thermal/visible data combinations to the problem of dating pedologic and geomorphic features in arid regions.

Quantitative and comparative liquid chromatography-electrospray ionization-mass spectrometry analyses of hydrogen sulfide and thiol metabolites derivaitized with 2-iodoacetanilide isotopologues.

PubMed

Lee, Der-Yen; Huang, Wei-Chieh; Gu, Ting-Jia; Chang, Geen-Dong

2018-06-01

Hydrogen sulfide (H 2 S), previously known as a toxic gas, is now recognized as a gasotransmitter along with nitric oxide and carbon monoxide. However, only few methods are available for quantitative determination of H 2 S in biological samples. 2-Iodoacetanilide (2-IAN), a thiol-reacting agent, has been used to tag the reduced cysteine residues of proteins for quantitative proteomics and for detection of cysteine oxidation modification. In this article, we proposed a new method for quantitative analyses of H 2 S and thiol metabolites using the procedure of pre-column 2-IAN derivatization coupled with liquid chromatography-electrospray ionization-mass spectrometry (LC-ESI-MS). 13 C 6 -Labeled and label-free 2-IAN efficiently react with H 2 S and thiol compounds at pH 9.5 and 65 °C. The derivatives exhibit excellent stability at alkaline conditions, high resolution on reverse phase liquid chromatography and great sensitivity for ESI-MS detection. The measurement of H 2 S, l-cysteine, glutathione, and DL-homocysteine derivatives was validated using 13 C 6 -labeled standard in LC-ESI-MS analyses and exhibited 10 nM-1 μM linear ranges for DL-homocysteine and glutathione and 1 nM-1 μM linear ranges for l-cysteine and H 2 S. In addition, the sequence of derivatization and extraction of metabolites is important in the quantification of thiol metabolites suggesting the presence of matrix effects. Most importantly, labeling with 2-IAN and 13 C 6 -2-IAN isotopologues could achieve quantitative and matched sample comparative analyses with minimal bias using our extraction and labeling procedures before LC-MS analysis. Copyright © 2018 Elsevier B.V. All rights reserved.

Relative tectonics and debris flow hazards in the Beijing mountain area from DEM-derived geomorphic indices and drainage analysis

NASA Astrophysics Data System (ADS)

Cheng, Weiming; Wang, Nan; Zhao, Min; Zhao, Shangmin

2016-03-01

The geomorphic setting of the tectonically active area around Beijing is a result of complex interactions involving Yanshan neotectonic movements and processes of erosion and deposition. The Beijing Mountain study area contains the junction of two mountain ranges (the Yanshan Mountains and the Taihang Mountains). Tectonic activity has significantly influenced the drainage system and the geomorphic situation in the area, leading to a high probability of the development of debris flows, which is one of the major abrupt geological disasters in the region. Based on 30-m-resolution ASTER GDEM data, a total of 752 drainage basins were extracted using ArcGIS software. A total of 705 debris flow valleys were visually interpreted from ALOS satellite images and published documents. Seven geomorphic indices were calculated for each basin including the relief amplitude, the hypsometric integral, the stream length gradient, the basin shape indices, the fractal dimension, the asymmetry factor, and the ratio of the valley floor width to the height. These geomorphic indices were divided into five classes and the ratio of the number of the debris flow valleys to the number of the drainage basins for each geomorphic index was computed and analyzed for every class. Average class values of the seven indices were used to derive an index of relative active tectonics (IRAT). The ratio of the number of the debris flow valleys to the number of the drainage basins was computed for every class of IRAT. The degree of probable risk level was then defined from the IRAT classes. Finally, the debris flow hazard was evaluated for each drainage basin based on the combined effect of probable risk level and occurrence frequency of the debris flows. The result showed a good correspondence between IRAT classes and the ratio of the number of the debris flow valleys to the number of the drainage basins. Approximately 65% of the drainage basins with occurred debris flow valleys are at a high risk level

Anthropogenic control on geomorphic process rates: can we slow down the erosion rates? (Geomorphology Outstanding Young Scientist Award & Penck Lecture)

NASA Astrophysics Data System (ADS)

Vanacker, V.

2012-04-01

The surface of the Earth is changing rapidly, largely in response to anthropogenic perturbation. Direct anthropogenic disturbance of natural environments may be much larger in many places than the (projected) indirect effects of climate change. There is now large evidence that humans have significantly altered geomorphic process rates, mainly through changes in vegetation composition, density and cover. While much attention has been given to the impact of vegetation degradation on geomorphic process rates, I suggest that the pathway of restoration is equally important to investigate. First, vegetation recovery after crop abandonment has a rapid and drastic impact on geomorphic process rates. Our data from degraded catchments in the tropical Andes show that erosion rates can be reduced by up to 100 times when increasing the protective vegetation cover. During vegetation restoration, the combined effects of the reduction in surface runoff, sediment production and hydrological connectivity are stronger than the individual effects together. Therefore, changes in erosion and sedimentation during restoration are not simply the reverse of those observed during degradation. Second, anthropogenic perturbation causes a profound but often temporary change in geomorphic process rates. Reconstruction of soil erosion rates in Spain shows us that modern erosion rates in well-vegetated areas are similar to long-term rates, despite evidence of strong pulses in historical erosion rates after vegetation clearance and agriculture. The soil vegetation system might be resilient to short pulses of accelerated erosion (and deposition), as there might exist a dynamic coupling between soil erosion and production also in degraded environments.

Qcritical as a Geomorphically and Biologically Relevant Flow Threshold for Stormwater Management and Catchment-scale Stream Restoration

NASA Astrophysics Data System (ADS)

Hawley, R. J.; Vietz, G. J.; Wooten, M. S.

2016-12-01

The threshold discharge that initiates streambed mobilization (Qcritical) is one of the most mechanistically-important flows for geomorphic function and biological integrity in stream ecosystems. Increased frequency and duration of flows that exceed Qcritical are a dominant driver of geomorphic instability and excess benthic disturbance in urban/suburban streams (i.e. the urban disturbance regime). Qcritical frequency also corresponds to measures of stream integrity in reference streams, with both geomorphic stability and biological indices significantly correlated to time since a Qcritical event in one 7-y study. Indeed, reference site macroinvertebrate communities during years with atypically frequent Qcritical events were more similar to sites draining watersheds with 30% imperviousness than to reference site communities of more typical rainfall years. Despite its biophysical relevance to stream ecosystems, Qcritical is one of the most overlooked and misunderstood flows in the stormwater management and stream restoration fields. Regional stormwater policies and stream restoration design guidance are often based on the misplaced assumption that streambed erosion does not occur at sub-bankfull events (often assumed to correspond to the 1-y recurrence discharge). Using an international database of nearly 200 sites we show that Qcritical varies by several orders of magnitude as a function of streambed particle size. Qcritical in sand-dominated streams is likely to be orders of magnitude less than the 1-yr discharge, whereas Qcritical in cobble/boulder dominated streams could be much larger than the 1-yr discharge, implying that stormwater/restoration policies focused on the 1-yr event could lack efficacy in many stream settings. Qcritical is a geomorphically- and biologically-relevant discharge threshold when developing stormwater management policies intended to protect streams from excess erosion, designing watershed-scale restoration efforts to restore a more

A Modeling Approach for Evaluating the Coupled Riparian Vegetation-Geomorphic Response to Altered Flow Regimes

NASA Astrophysics Data System (ADS)

Manners, R.; Wilcox, A. C.; Merritt, D. M.

2016-12-01

The ecogeomorphic response of riparian ecosystems to a change in hydrologic properties is difficult to predict because of the interactions and feedbacks among plants, water, and sediment. Most riparian models of community dynamics assume a static channel, yet geomorphic processes strongly control the establishment and survival of riparian vegetation. Using a combination of approaches that includes empirical relationships and hydrodynamic models, we model the coupled vegetation-topographic response of three cross-sections on the Yampa and Green Rivers in Dinosaur National Monument, to a shift in the flow regime. The locations represent the variable geomorphology and vegetation composition of these canyon-bound rivers. We account for the inundation and hydraulic properties of vegetation plots surveyed over three years within International River Interface Cooperative (iRIC) Fastmech, equipped with a vegetation module that accounts for flexible stems and plant reconfiguration. The presence of functional groupings of plants, or those plants that respond similarly to environmental factors such as water availability and disturbance are determined from flow response curves developed for the Yampa River. Using field measurements of vegetation morphology, distance from the channel centerline, and dominant particle size and modeled inundation properties we develop an empirical relationship between these variables and topographic change. We evaluate vegetation and channel form changes over decadal timescales, allowing for the integration of processes over time. From our analyses, we identify thresholds in the flow regime that alter the distribution of plants and reduce geomorphic complexity, predominately through side-channel and backwater infilling. Simplification of some processes (e.g., empirically-derived sedimentation) and detailed treatment of others (e.g., plant-flow interactions) allows us to model the coupled dynamics of riparian ecosystems and evaluate the impact of

The geomorphic legacy of water and erosion control structures in a semiarid rangeland watershed

USGS Publications Warehouse

Nichols, Mary H.; Magirl, Christopher S.; Sayre, N.F.; Shaw, Jeremy R.

2018-01-01

Control over water supply and distribution is critical for agriculture in drylands where manipulating surface runoff often serves the dual purpose of erosion control. However, little is known of the geomorphic impacts and legacy effects of rangeland water manipulation infrastructure, especially if not maintained. This study investigated the geomorphic impacts of structures such as earthen berms, water control gates, and stock tanks, in a semiarid rangeland in the southwestern USA that is responding to both regional channel incision that was initiated over a century ago, and a more recent land use change that involved cattle removal and abandonment of structures. The functional condition of remnant structures was inventoried, mapped, and assessed using aerial imagery and lidar data. Headcut initiation, scour, and channel incision associated with compromised lateral channel berms, concrete water control structures, floodplain water spreader berms, and stock tanks were identified as threats to floodplains and associated habitat. Almost half of 27 identified lateral channel berms (48%) have been breached and 15% have experienced lateral scour; 18% of 218 shorter water spreader berms have been breached and 17% have experienced lateral scour. A relatively small number of 117 stock tanks (6%) are identified as structurally compromised based on analysis of aerial imagery, although many currently do not provide consistent water supplies. In some cases, the onset of localized disturbance is recent enough that opportunities for mitigation can be identified to alter the potentially damaging erosion trajectories that are ultimately driven by regional geomorphic instability. Understanding the effects of prior land use and remnant structures on channel and floodplain morphologic condition is critical because both current land management and future land use options are constrained by inherited land use legacy effects.

The Geomorphic System and the Effects of Human Interference at Gold Coast Beach in Tainan, Taiwan

NASA Astrophysics Data System (ADS)

Lin, Tsung-Yi

2017-04-01

The Gold Coast beach in Tainan, Taiwan, located between Anping harbor and Ur-Jen river mouth, is the subject of this study, which characterizes the beach's geomorphic system through the analysis of information such as sediment grain size, mineral composition, and periodic measurements of morphological changes of the beach. Based upon such characterizations, further analysis is conducted on the effects that human activities of the last 15 years have upon the geomorphic changes within the Gold Coast beach. The study shows that the median grain size of the Gold Coast beach's sediment is medium sand. The mineral composition includes mainly slate fragments and quartz grains, with small amounts of feldspar, sandstone and shell fragments. Based on a comprehensive study of the longshore distribution of beach sediment size and mineral composition of southwestern coast of Taiwan, as well as, the long-term, monitored data of waves, tides, and currents in this region, we conclude that the main process responsible for the sand accumulation at Gold Coast beach is the prevailing longshore sand transport from south to north. The southern breakwater of Anping harbor plays a role in intercepting the longshore transport sand and helps form the beach. Since the Ur-Jen river flows through a mudstone region, the suspended sediment plume during the flood season does not provide much sediment source to the sandy beach. A monthly beach profile survey project conducted between the years 1999 to 2000 revealed that the beach elevation and width had experienced an obvious seasonal change. The beach widened during the winter, but narrowed in the summer due to typhoon wave erosion. When the subaerial beach was eroded, a submerged longshore bar that was oriented almost parallel to the shoreline had formed at a distance about 400-600 meter away. With this observation, we can conclude that beach morphology is also influenced by various seasonal wave actions that affect onshore and offshore sand

Introduction: Geomorphic studies of the storm and flood of November 3-5, 1985, in the upper Potomac and Cheat River basins: Chapter A in Geomorphic studies of the storm and flood of November 3-5, 1985, in the upper Potomac and Cheat River basins in West Virginia and Virginia

USGS Publications Warehouse

Jacobson, Robert B.

1993-01-01

The heavy rains of November 3-5, 1985, produced record floods and extensive landsliding in the Potomac and Cheat River basins in West Virginia and Virginia (pl. 1). Although rainfall intensity was moderate, the storm covered a very large area and produced record floods for basins in the size range of 1000-10,000 km2. In addition, thousands of landslides were triggered on slopes underlain by shale bedrock. The total social cost of the storm amounted to 70 lives lost and an estimated $1.3 billion in damage to homes, businesses, roads, and productive land in West Virginia and Virginia (Federal Emergency Management Agency (FEMA) 1985a, b). These extreme costs were incurred despite the fact that the affected area is sparsely populated. To understand the origins and geomorphic effects of the 1985 storm, studies were undertaken by the U.S. Geological Survey, University of Maryland, West Virginia University, Cornell University, University of Virginia, The Johns Hopkins University, and Carleton College. Personnel were also consulted from the National Weather Service, Nuclear Regulatory Commission, U.S. Army Corps of Engineers, Soil Conservation Service, and Interstate Commission on the Potomac River basin. This cooperative effort serves to document the effects of the storm as an example of an extreme geomorphic event in the central Appalachian Mountains. The following chapters comprise observations and preliminary analyses for some of the observed phenomena. Subsequent publications by the contributors to this volume will expand the scope of this research.

Geomorphic Modeling of Macro-Tidal Embayment with Extensive Tidal Flats: Skagit Bay, Washington

DTIC Science & Technology

2011-09-30

tidal flats: Skagit Bay , Washington Lyle Hibler Battelle-Pacific Northwest Division Marine Sciences Laboratory Sequim , WA 98382 phone: (360) 681...3616 fax: (360) 681-4559 email: lyle.hibler@pnnl.gov Adam Maxwell Battelle-Pacific Northwest Division Marine Sciences Laboratory Sequim , WA...Geomorphic modeling of macro-tidal embayment with extensive tidal flats: Skagit Bay , Washington 5a. CONTRACT NUMBER 5b. GRANT NUMBER 5c. PROGRAM ELEMENT

Geomorphic Modeling of Macro-Tidal Embayment with Extensive Tidal Flats: Skagit Bay, Washington

DTIC Science & Technology

2010-09-30

Geomorphic modeling of macro-tidal embayment with extensive tidal flats: Skagit Bay , Washington Lyle Hibler Battelle-Pacific Northwest Division...Marine Sciences Laboratory Sequim , WA 98382 phone: (360) 681-3616 fax: (360) 681-4559 email: lyle.hibler@pnl.gov Adam Maxwell Battelle-Pacific...Northwest Division Marine Sciences Laboratory Sequim , WA 98382 phone: (360) 681-4591 fax: (360) 681-4559 email: adam.maxwell@pnl.gov Award

Pre-Restoration Geomorphic Characteristics of Minebank Run, Baltimore County, Maryland, 2002-04

USGS Publications Warehouse

Doheny, Edward J.; Starsoneck, Roger J.; Mayer, Paul M.; Striz, Elise A.

2007-01-01

Data collected from 2002 through 2004 were used to assess geomorphic characteristics and geomorphic changes over time in a selected reach of Minebank Run, a small urban watershed near Towson, Maryland, prior to its physical restoration in 2004 and 2005. Longitudinal profiles of the channel bed, water surface, and bank features were developed from field surveys. Changes in cross-section geometry between field surveys were documented. Grain-size distributions for the channel bed and banks were developed from pebble counts and laboratory analyses. Net changes in the elevation of the channel bed over time were documented at selected locations. Rosgen Stream Classification was used to classify the stream channel according to morphological measurements of slope, entrenchment ratio, width-to-depth ratio, sinuosity, and median-particle diameter of the channel materials. An analysis of boundary shear stress in the vicinity of the streamflow-gaging station was conducted by use of hydraulic variables computed from cross-section surveys and slope measurements derived from crest-stage gages in the study reach. Analysis of the longitudinal profiles indicated noticeable changes in the percentage and distribution of riffles, pools, and runs through the study reach between 2002 and 2004. Despite major changes to the channel profile as a result of storm runoff events, the overall slope of the channel bed, water surface, and bank features remained constant at about 1 percent. The cross-sectional surveys showed net increases in cross-sectional area, mean depth, and channel width at several locations between 2002 and 2004, which indicate channel degradation and widening. Two locations were identified where significant amounts of sediment were being stored in the study reach. Data from scour chains identified several locations where maximum scour ranged from 1.0-1.4 feet during storm events. Bank retreat varied widely throughout the study reach and ranged from 0.2 feet to as much as 7

Practicable methods for histological section thickness measurement in quantitative stereological analyses.

PubMed

Matenaers, Cyrill; Popper, Bastian; Rieger, Alexandra; Wanke, Rüdiger; Blutke, Andreas

2018-01-01

The accuracy of quantitative stereological analysis tools such as the (physical) disector method substantially depends on the precise determination of the thickness of the analyzed histological sections. One conventional method for measurement of histological section thickness is to re-embed the section of interest vertically to its original section plane. The section thickness is then measured in a subsequently prepared histological section of this orthogonally re-embedded sample. However, the orthogonal re-embedding (ORE) technique is quite work- and time-intensive and may produce inaccurate section thickness measurement values due to unintentional slightly oblique (non-orthogonal) positioning of the re-embedded sample-section. Here, an improved ORE method is presented, allowing for determination of the factual section plane angle of the re-embedded section, and correction of measured section thickness values for oblique (non-orthogonal) sectioning. For this, the analyzed section is mounted flat on a foil of known thickness (calibration foil) and both the section and the calibration foil are then vertically (re-)embedded. The section angle of the re-embedded section is then calculated from the deviation of the measured section thickness of the calibration foil and its factual thickness, using basic geometry. To find a practicable, fast, and accurate alternative to ORE, the suitability of spectral reflectance (SR) measurement for determination of plastic section thicknesses was evaluated. Using a commercially available optical reflectometer (F20, Filmetrics®, USA), the thicknesses of 0.5 μm thick semi-thin Epon (glycid ether)-sections and of 1-3 μm thick plastic sections (glycolmethacrylate/ methylmethacrylate, GMA/MMA), as regularly used in physical disector analyses, could precisely be measured within few seconds. Compared to the measured section thicknesses determined by ORE, SR measures displayed less than 1% deviation. Our results prove the applicability

Practicable methods for histological section thickness measurement in quantitative stereological analyses

PubMed Central

Matenaers, Cyrill; Popper, Bastian; Rieger, Alexandra; Wanke, Rüdiger

2018-01-01

The accuracy of quantitative stereological analysis tools such as the (physical) disector method substantially depends on the precise determination of the thickness of the analyzed histological sections. One conventional method for measurement of histological section thickness is to re-embed the section of interest vertically to its original section plane. The section thickness is then measured in a subsequently prepared histological section of this orthogonally re-embedded sample. However, the orthogonal re-embedding (ORE) technique is quite work- and time-intensive and may produce inaccurate section thickness measurement values due to unintentional slightly oblique (non-orthogonal) positioning of the re-embedded sample-section. Here, an improved ORE method is presented, allowing for determination of the factual section plane angle of the re-embedded section, and correction of measured section thickness values for oblique (non-orthogonal) sectioning. For this, the analyzed section is mounted flat on a foil of known thickness (calibration foil) and both the section and the calibration foil are then vertically (re-)embedded. The section angle of the re-embedded section is then calculated from the deviation of the measured section thickness of the calibration foil and its factual thickness, using basic geometry. To find a practicable, fast, and accurate alternative to ORE, the suitability of spectral reflectance (SR) measurement for determination of plastic section thicknesses was evaluated. Using a commercially available optical reflectometer (F20, Filmetrics®, USA), the thicknesses of 0.5 μm thick semi-thin Epon (glycid ether)-sections and of 1–3 μm thick plastic sections (glycolmethacrylate/ methylmethacrylate, GMA/MMA), as regularly used in physical disector analyses, could precisely be measured within few seconds. Compared to the measured section thicknesses determined by ORE, SR measures displayed less than 1% deviation. Our results prove the applicability

From ocean depths to mountain tops: uplift of the Troodos Massif (Cyprus) constrained by (U-Th)/He thermochronology and geomorphic analysis

NASA Astrophysics Data System (ADS)

Morag, N.; Haviv, I.; Katzir, Y.

2013-12-01

The Troodos Massif of Cyprus, rising to nearly 2000 meters above sea level, encompasses one of the world's classic ophiolites. Following its formation at a seafloor spreading center in Late Cretaceous times, this slice of the NeoTethyan oceanic lithosphere was uplifted and eventually exposed on mountain tops during the Neogene. The final uplift and exhumation of the Troodos was previously assigned to Pleistocene age by observations in the circum-Troodos sedimentary strata. However, quantitative thermochronological and geomorphological data from the Massif itself were not available. Here we use apatite (U-Th)/He low-temperature thermochronology complemented by zircon (U-Th)/He and apatite fission track data, and combined with geomorphic analysis to constrain the exhumation and uplift history of the Troodos ophiolite. Apatite (U-Th)/He ages vary with depth from ~ 22 Ma at the top of the Gabbro sequence to ~ 6 Ma at the bottom of the sequence. The deepest sample from a Gabbro pegmatitic dyke intruding the ultramafic sequence yielded an age of ~ 3 Ma. Thermal modeling of apatite (U-Th)/He and fission track data delineates Plio - Pleistocene initiation of rapid uplift and exhumation of the Troodos ophiolite. The estimated cumulative exhumation since its initiation is 2-3 km. No evidence was found for significant uplift of the central Troodos area prior to that time. The geomorphic analysis delineates a bull's-eye zone at the center of the Troodos Massif, where local relief and channel steepness index are highest. The boundaries of this zone roughly correspond with the Mt. Olympus mantle outcrop and suggest recent, differential uplift of this zone relative to its surroundings. The most likely mechanism, which could drive such a focused bull's-eye uplift pattern is hydration of ultramafic rocks (serpentinization) leading to a decrease in rock density and subsequent diapiric uplift of the serpentinized lithospheric mantle.

What are we monitoring and why? Using geomorphic principles to frame eco-hydrological assessments of river condition.

PubMed

Brierley, Gary; Reid, Helen; Fryirs, Kirstie; Trahan, Nadine

2010-04-01

Monitoring and assessment are integral components in adaptive management programmes that strive to improve the condition of river systems. Unfortunately, these procedures are generally applied with an emphasis upon biotic attributes and water quality, with limited regard for the geomorphic structure, function and evolutionary trajectory of a river system. Geomorphic principles convey an understanding of the landscape context within which ecohydrologic processes interact. Collectively, geo-eco-hydrologic understanding presents a coherent biophysical template that can be used to frame spatially and temporally rigorous approaches to monitoring that respect the inherent diversity, variability and complexity of any given river system. This understanding aids the development of management programmes that 'work with nature.' Unless an integrative perspective is used to monitor river condition, conservation and rehabilitation plans are unlikely to reach their true potential. (c) 2010 Elsevier B.V. All rights reserved.

Fluvial geomorphic elements in modern sedimentary basins and their potential preservation in the rock record: A review

NASA Astrophysics Data System (ADS)

Weissmann, G. S.; Hartley, A. J.; Scuderi, L. A.; Nichols, G. J.; Owen, A.; Wright, S.; Felicia, A. L.; Holland, F.; Anaya, F. M. L.

2015-12-01

Since tectonic subsidence in sedimentary basins provides the potential for long-term facies preservation into the sedimentary record, analysis of geomorphic elements in modern continental sedimentary basins is required to understand facies relationships in sedimentary rocks. We use a database of over 700 modern sedimentary basins to characterize the fluvial geomorphology of sedimentary basins. Geomorphic elements were delineated in 10 representative sedimentary basins, focusing primarily on fluvial environments. Elements identified include distributive fluvial systems (DFS), tributive fluvial systems that occur between large DFS or in an axial position in the basin, lacustrine/playa, and eolian environments. The DFS elements include large DFS (> 30 km in length), small DFS (< 30 km in length), coalesced DFS in bajada or piedmont plains, and incised DFS. Our results indicate that over 88% of fluvial deposits in the evaluated sedimentary basins are present as DFS, with tributary systems covering a small portion (1-12%) of the basin. These geomorphic elements are commonly arranged hierarchically, with the largest transverse rivers forming large DFS and smaller transverse streams depositing smaller DFS in the areas between the larger DFS. These smaller streams commonly converge between the large DFS, forming a tributary system. Ultimately, most transverse rivers become tributary to the axial system in the sedimentary basin, with the axial system being confined between transverse DFS entering the basin from opposite sides of the basin, or a transverse DFS and the edge of the sedimentary basin. If axial systems are not confined by transverse DFS, they will form a DFS. Many of the world's largest rivers are located in the axial position of some sedimentary basins. Assuming uniformitarianism, sedimentary basins from the past most likely had a similar configuration of geomorphic elements. Facies distributions in tributary positions and those on DFS appear to display

Airborne laser swath mapping of the Denton Hills, Transantarctic Mountains, Antarctica: Applications for structural and glacial geomorphic mapping

USGS Publications Warehouse

Wilson, Terry; Csathó, Beata

2007-01-01

High-resolution digital elevation data acquired by airborne laser scanning (ALS) for the Denton Hills, along the coastal foothills of the Royal Society Range, Transantarctic Mountains, are examined for applications to bedrock and glacial geomorphic mapping. Digital elevation models (DEMs), displayed as shaded-relief images and slope maps, portray geomorphic landscape features in unprecedented detail across the region. Structures of both ductile and brittle origin, ranging in age from the Paleozoic to the Quaternary, can be mapped from the DEMs. Glacial features, providing a record of the limits of grounded ice, of lake paleoshorelines, and of proglacial lake-ice conveyor deposits, are also prominent on the DEMs. The ALS-derived topographic data have great potential for a range of mapping applications in regions of ice-free terrain in Antarctica

A multi-resolution analysis of lidar-DTMs to identify geomorphic processes from characteristic topographic length scales

NASA Astrophysics Data System (ADS)

Sangireddy, H.; Passalacqua, P.; Stark, C. P.

2013-12-01

Characteristic length scales are often present in topography, and they reflect the driving geomorphic processes. The wide availability of high resolution lidar Digital Terrain Models (DTMs) allows us to measure such characteristic scales, but new methods of topographic analysis are needed in order to do so. Here, we explore how transitions in probability distributions (pdfs) of topographic variables such as (log(area/slope)), defined as topoindex by Beven and Kirkby[1979], can be measured by Multi-Resolution Analysis (MRA) of lidar DTMs [Stark and Stark, 2001; Sangireddy et al.,2012] and used to infer dominant geomorphic processes such as non-linear diffusion and critical shear. We show this correlation between dominant geomorphic processes to characteristic length scales by comparing results from a landscape evolution model to natural landscapes. The landscape evolution model MARSSIM Howard[1994] includes components for modeling rock weathering, mass wasting by non-linear creep, detachment-limited channel erosion, and bedload sediment transport. We use MARSSIM to simulate steady state landscapes for a range of hillslope diffusivity and critical shear stresses. Using the MRA approach, we estimate modal values and inter-quartile ranges of slope, curvature, and topoindex as a function of resolution. We also construct pdfs at each resolution and identify and extract characteristic scale breaks. Following the approach of Tucker et al.,[2001], we measure the average length to channel from ridges, within the GeoNet framework developed by Passalacqua et al.,[2010] and compute pdfs for hillslope lengths at each scale defined in the MRA. We compare the hillslope diffusivity used in MARSSIM against inter-quartile ranges of topoindex and hillslope length scales, and observe power law relationships between the compared variables for simulated landscapes at steady state. We plot similar measures for natural landscapes and are able to qualitatively infer the dominant geomorphic

Floodplain geomorphic processes and environmental impacts of human alteration along coastal plain rivers, USA

USGS Publications Warehouse

Hupp, C.R.; Pierce, Aaron R.; Noe, G.B.

2009-01-01

Human alterations along stream channels and within catchments have affected fluvial geomorphic processes worldwide. Typically these alterations reduce the ecosystem services that functioning floodplains provide; in this paper we are concerned with the sediment and associated material trapping service. Similarly, these alterations may negatively impact the natural ecology of floodplains through reductions in suitable habitats, biodiversity, and nutrient cycling. Dams, stream channelization, and levee/canal construction are common human alterations along Coastal Plain fluvial systems. We use three case studies to illustrate these alterations and their impacts on floodplain geomorphic and ecological processes. They include: 1) dams along the lower Roanoke River, North Carolina, 2) stream channelization in west Tennessee, and 3) multiple impacts including canal and artificial levee construction in the central Atchafalaya Basin, Louisiana. Human alterations typically shift affected streams away from natural dynamic equilibrium where net sediment deposition is, approximately, in balance with net erosion. Identification and understanding of critical fluvial parameters (e.g., stream gradient, grain-size, and hydrography) and spatial and temporal sediment deposition/erosion process trajectories should facilitate management efforts to retain and/or regain important ecosystem services. ?? 2009, The Society of Wetland Scientists.

Geomorphic Evidence for Martian Ground Ice and Climate Change

NASA Technical Reports Server (NTRS)

Kanner, L. C.; Allen, C. C.; Bell, M. S.

2004-01-01

Recent results from gamma-ray and neutron spectrometers on Mars Odyssey indicate the presence of a hydrogen-rich layer tens of centimeters thick in the uppermost meter in high latitudes (>60 ) on Mars. This hydrogen-rich layer correlates to regions of ice stability. Thus, the subsurface hydrogen is thought to be water ice constituting 35+/- 15% by weight near the north and south polar regions. We refine the location of subsurface ice deposits at a < km scale by combining existing spectroscopy data with surface features indicative of subsurface ice. A positive correlation between spectroscopy data and geomorphic ice indicators has been previously suggested for high latitudes. Here we expand the comparative study to northern mid latitudes (30 deg.N- 65 deg.N).

Stability Test and Quantitative and Qualitative Analyses of the Amino Acids in Pharmacopuncture Extracted from Scolopendra subspinipes mutilans.

PubMed

Cho, GyeYoon; Han, KyuChul; Yoon, JinYoung

2015-03-01

Scolopendra subspinipes mutilans (S. subspinipes mutilans) is known as a traditional medicine and includes various amino acids, peptides and proteins. The amino acids in the pharmacopuncture extracted from S. subspinipes mutilans by using derivatization methods were analyzed quantitatively and qualitatively by using high performance liquid chromatography (HPLC) over a 12 month period to confirm its stability. Amino acids of pharmacopuncture extracted from S. subspinipes mutilans were derived by using O-phthaldialdehyde (OPA) & 9-fluorenyl methoxy carbonyl chloride (FMOC) reagent and were analyzed using HPLC. The amino acids were detected by using a diode array detector (DAD) and a fluorescence detector (FLD) to compare a mixed amino acid standard (STD) to the pharmacopuncture from centipedes. The stability tests on the pharmacopuncture from centipedes were done using HPLC for three conditions: a room temperature test chamber, an acceleration test chamber, and a cold test chamber. The pharmacopuncture from centipedes was prepared by using the method of the Korean Pharmacopuncture Institute (KPI) and through quantitative analyses was shown to contain 9 amino acids of the 16 amino acids in the mixed amino acid STD. The amounts of the amino acids in the pharmacopuncture from centipedes were 34.37 ppm of aspartate, 123.72 ppm of arginine, 170.63 ppm of alanine, 59.55 ppm of leucine and 57 ppm of lysine. The relative standard deviation (RSD %) results for the pharmacopuncture from centipedes had a maximum value of 14.95% and minimum value of 1.795% on the room temperature test chamber, the acceleration test chamber and the cold test chamber stability tests. Stability tests on and quantitative and qualitative analyses of the amino acids in the pharmacopuncture extracted from centipedes by using derivatization methods were performed by using HPLC. Through research, we hope to determine the relationship between time and the concentrations of the amino acids in the

An evaluation of the effectiveness of low-cost UAVs and structure from motion for geomorphic change detection

NASA Astrophysics Data System (ADS)

Cook, Kristen L.

2017-02-01

The measurement of topography and of topographic change is essential for the study of many geomorphic processes. In recent years, structure from motion (SfM) techniques applied to photographs taken by camera-equipped unmanned aerial vehicles (UAVs) has become a powerful new tool for the generation of high resolution topography. The variety of available UAV systems continues to increase rapidly, but it is not clear whether increased UAV sophistication translates into improved quality of the calculated topography. To evaluate the lower end of the UAV spectrum, a simple low cost UAV was deployed to calculate high resolution topography in the Daan River gorge in western Taiwan, a site with a complicated 3D morphology and a wide range of surface types, making it a challenging site for topographic measurement. Terrestrial lidar surveys were conducted in parallel with UAV surveys in both June and November 2014, enabling an assessment of the reliability of the UAV survey to detect geomorphic changes in the range of 30 cm to several meters. A further UAV survey was conducted in June 2015 in order to quantify changes resulting from the 2015 spring monsoon. To evaluate the accuracy of the UAV derived topography, it was compared to terrestrial lidar data collected during the same survey period using the cloud-to-cloud comparison algorithm M3C2. The UAV-generated point clouds match the lidar point clouds well, with RMS errors of 30-40 cm; however, the accuracy of the SfM point clouds depends strongly on the characteristics of the surface being considered, with vegetation, water, and small scale texture causing inaccuracies. The lidar and SfM data yield similar maps of change from June to November 2014, with the same areas of geomorphic change detected by both methods. The SfM-generated change map for November 2014 to June 2015 indicates that the 2015 spring monsoon caused erosion throughout the gorge and highlights the importance of event-driven erosion in the Daan River. The

Automated Detection of Geomorphic Features in LiDAR Point Clouds of Various Spatial Density

NASA Astrophysics Data System (ADS)

Dorninger, Peter; Székely, Balázs; Zámolyi, András.; Nothegger, Clemens

2010-05-01

LiDAR, also referred to as laser scanning, has proved to be an important tool for topographic data acquisition. Terrestrial laser scanning allows for accurate (several millimeter) and high resolution (several centimeter) data acquisition at distances of up to some hundred meters. By contrast, airborne laser scanning allows for acquiring homogeneous data for large areas, albeit with lower accuracy (decimeter) and resolution (some ten points per square meter) compared to terrestrial laser scanning. Hence, terrestrial laser scanning is preferably used for precise data acquisition of limited areas such as landslides or steep structures, while airborne laser scanning is well suited for the acquisition of topographic data of huge areas or even country wide. Laser scanners acquire more or less homogeneously distributed point clouds. These points represent natural objects like terrain and vegetation and artificial objects like buildings, streets or power lines. Typical products derived from such data are geometric models such as digital surface models representing all natural and artificial objects and digital terrain models representing the geomorphic topography only. As the LiDAR technology evolves, the amount of data produced increases almost exponentially even in smaller projects. This means a considerable challenge for the end user of the data: the experimenter has to have enough knowledge, experience and computer capacity in order to manage the acquired dataset and to derive geomorphologically relevant information from the raw or intermediate data products. Additionally, all this information might need to be integrated with other data like orthophotos. In all theses cases, in general, interactive interpretation is necessary to determine geomorphic structures from such models to achieve effective data reduction. There is little support for the automatic determination of characteristic features and their statistical evaluation. From the lessons learnt from automated

Classification of upper Mississippi River pools based on contiguous aquatic/geomorphic habitats

USGS Publications Warehouse

Koel, Todd M.

2001-01-01

Navigation pools of the upper Mississippi River (UMR) vary greatly in terms of available contiguous aquatic/geomorphic habitats. These habitats are critical for the biotic diversity and overall productivity of the floodplain corridor of each pool. In this study, similarities among pools 4-26 and an open river reach (river kilometer 47-129) of the UMR were determined from multivariate analysis of eleven habitat types that were hydrologically-contiguous (non-leveed). Isolated floodplain habitats were not included in final analyses because this isolation limits their contribution to overall riverine productivity, in part due to a lack of hydrological connectivity to the main channel during the flood pulse. Cluster analysis based on simple Euclidean distance was used to produce two major pool groups and five pool subgroups. Important habitat variables in defining pool groups, as interpreted from principal components analysis (PCA) axis 1, were contiguous floodplain shallow aquatic area and contiguous impounded area. The habitat variable most important in defining pool subgroups, as interpreted from PCA axis 2, was tertiary channel. Most notably, pool 6 was more similar to pools 14-24 than other upper pools, and pools 19 and 25 were more similar to pools 4-13 than other lower pools. These results were quite different from those of two previous investigators, primarily because only areas of non-isolated aquatic habitat were considered.

Geomorphic Evolution and Slip rate Measurements of the Noushki Segment , Chaman Fault Zone, Pakistan

NASA Astrophysics Data System (ADS)

Abubakar, Y.; Khan, S. D.; Owen, L. A.; Khan, A.

2012-12-01

The Nushki segment of the Chaman fault system is unique in its nature as it records both the imprints of oblique convergence along the western Indian Plate boundary as well as the deformation along the Makran subduction zone. The left-lateral Chaman transform zone has evolved from a subduction zone along the Arabian-Eurasian collision complex to a strike-slip fault system since the collision of the Indian Plate with the Eurasia. The geodetically and geologically constrained displacement rates along the Chaman fault varies from about 18 mm/yr to about 35 mm/yr respectively throughout its total length of ~ 860 km. Two major hypothesis has been proposed by workers for these variations; i) Variations in rates of elastic strain accumulation along the plate boundary and, ii) strain partitioning along the plate boundary. Morphotectonic analysis is a very useful tool in investigations of spatial variations in tectonic activities both regionally and locally. This work uses morphotectonic analysis to investigate the degree of variations in active tectonic deformation, which can be directly related to elastic strain accumulation and other kinematics in the western boundary of the plate margin. Geomorphic mapping was carried out using remotely sensed data. ASTER and RADAR data were used in establishing Quaternary stratigraphy and measurement of geomorphic indices such as stream length gradient index, valley floor width to height ratio and, river/stream longitudinal profile within the study area. High resolution satellite images (e.g., IKONOS imagery) and 30m ASTER DEMs were employed to measure displacement recorded by landforms along individual strands of the fault. Results from geomorphic analysis shows three distinct levels of tectonic deformation. Areas showing high levels of tectonic deformation are characterized by displaced fan surfaces, deflected streams and beheaded streams. Terrestrial Cosmogenic nuclide surface exposure dating of the displaced landforms is being

Active Structures as Deduced from Geomorphic Features: A case in Hsinchu Area, northwestern Taiwan

NASA Astrophysics Data System (ADS)

Chen, Y.; Shyu, J.; Ota, Y.; Chen, W.; Hu, J.; Tsai, B.; Wang, Y.

2002-12-01

Hsinchu area is located in the northwestern Taiwan, the fold-and thrust belt created by arc-continent collision between Eurasian and Philippine. Since the collision event is still ongoing, the island is tectonically active and full of active faults. According to the historical records, some of the faults are seismically acting. In Hsinchuarea two active faults, the Hsinchu and Hsincheng, have been previously mapped. To evaluate the recent activities, we studied the related geomorphic features by using newly developed Digital Elevation Model (DEM), the aerial photos and field investigation. Geologically, both of the faults are coupled with a hanging wall anticline. The anticlines are recently active due to the deformation of the geomorphic surfaces. The Hsinchu fault system shows complicate corresponding scarps, distributed sub-parallel to the fault trace previously suggested by projection of subsurface geology. This is probably caused by its strike-slip component tearing the surrounding area along the main trace. The scarps associated with the Hsincheng fault system are rather simple and unique. It offsets a flight of terraces all the way down to recent flood plain, indicating its long lasting activity. One to two kilometers to east of main trace a back-thrust is found, showing coupled vertical surface offsets with the main fault. The striking discovery in this study is that the surface deformation is only distributed in the southern bank of Touchien river, also suddenly decreasing when crossing another tear fault system, which is originated from Hsincheng fault in the west and extending southeastward parallel to the Touchien river. The strike-slip fault system mentioned above not only bisects the Hsinchu fault, but also divides the Hsincheng fault into segments. The supporting evidence found in this study includes pressure ridges and depressions. As a whole, the study area is tectonically dominated by three active fault systems and two actively growing anticlines

A landscape scale valley confinement algorithm: Delineating unconfined valley bottoms for geomorphic, aquatic, and riparian applications

Treesearch

David E. Nagel; John M. Buffington; Sharon L. Parkes; Seth Wenger; Jaime R. Goode

2014-01-01

Valley confinement is an important landscape characteristic linked to aquatic habitat, riparian diversity, and geomorphic processes. This report describes a GIS program called the Valley Confinement Algorithm (VCA), which identifies unconfined valleys in montane landscapes. The algorithm uses nationally available digital elevation models (DEMs) at 10-30 m resolution to...

Rapid geomorphic change caused by glacial outburst floods and debris flows along Tahoma Creek, Mount Rainier, Washington, USA

USGS Publications Warehouse

Walder, J.S.; Driedger, C.L.

1994-01-01

As part of a hazards-assessment study, we examined the nature and rate of geomorphic change caused by outburst floods and debris flows along Tahoma Creek. Mount Rainier, since 1967. Archival aerial photographs of the area proved to be a rich source of qualitative geomorphic information. On the basis of limited direct evidence and considerations of stream hydrology, we conclude that nearly all of these debris flows began as outburst floods from South Tahoma Glacier. The water floods transformed to debris flows by incorporating large masses of sediment in a 2-km-long channel reach where the stream has incised proglacial sediments and debris-rich, stagnant glacier ice. Comparison of topographic maps for 1970 and 1991 shows that the average sediment flux out of the incised reach has been about 2 to 4 × 105 m3 a-1 corresponding to an average denudation rate in the upper part of the Tahoma Creek drainage basin of about 20 to 40 mm a-1, a value exceeded only rarely in basins affected by debris flows. However, little of this sediment has yet passed out of the Tahoma Creek basin. Comparison of geomorphic change at Tahoma Creek to that in two other alpine basins affected by outburst floods suggests that debris-rich stagnant ice can be an important source of sediment for debris flows as long as floods are frequent or channel slope is great.

Geomorphic floodplain with organic matter (biomass) estimates for Fanno Creek, Oregon

USGS Publications Warehouse

Sobieszczyk, Steven

2011-01-01

Fanno Creek is a tributary to the Tualatin River and flows though parts of the southwest Portland metropolitan area. The stream is heavily influenced by urban runoff and shows characteristic flashy streamflow and poor water quality commonly associated with urban streams. This data set represents the geomorphic floodplain as derived from light detection and ranging (LiDAR) data and aerial photographic imagery. The floodplain represents current conditions including both anthropogenic alterations and natural historic floodplain features. The floodplain dataset is divided into 13 reach segments and attributed with corresponding organic material load estimates for each reach.

The geomorphic impact of catastrophic glacier ice loss in mountain regions

NASA Astrophysics Data System (ADS)

Evans, S. G.

2006-12-01

Perhaps the most dramatic manifestation of global warming is catastrophic glacier ice loss in mountain regions. The geomorphic impact of this process was first outlined by Evans and Clague in 1994 and includes mountain slope instability, glacier avalanching, the formation and failure of moraine dammed lakes, and the formation and failure of ice dammed lakes. The present paper is an update of the 1994 publication and has three components. First, a global review of recent glacier-related geomorphic events is undertaken. Second, an analysis of two cases from the Coast Mountains of British Columbia - the 1975 Devastation Glacier landslide and the 1983 Nostetuko Lake outburst resulting from the failure of a moraine dam illustrates the interaction of glacier ice loss and related geomorphic events. At Devastation Glacier, approximately 13 M m3 of altered Quaternary volcanic rock and glacier ice was lost from the west flank of Pylon Peak in the Mount Meager volcanic complex. The events were initiated by a catastrophic rockslide, involving altered Quaternary pyroclastic rocks, which continued down Devastation Creek valley as a high velocity debris avalanche. The overall length of the slide path was 7 km and the vertical height of the path was 1220 m yielding a fahrboschung of 10°. Other large landslides occurred in Devastation Creek valley in 1931 and 1947. Stability analysis of the initial failure shows that the 1975 rockslide was the result of a complex history of glacial erosion, loading and unloading of the toe of the slide mass caused by the Little Ice Age advance and subsequent retreat of Devastation Glacier. The shearing resistance along the base of the rockslide mass was reduced prior to 1975 by substantial previous slope displacements related to glacial ice loss. Some of this displacement is likely to have occurred as subglacial slope deformation since ice fall and crevasse patterns suggest the presence of slide like shearing displacements below the base of

Using Digital Time-Lapse Videos to Teach Geomorphic Processes to Undergraduates

NASA Astrophysics Data System (ADS)

Clark, D. H.; Linneman, S. R.; Fuller, J.

2004-12-01

We demonstrate the use of relatively low-cost, computer-based digital imagery to create time-lapse videos of two distinct geomorphic processes in order to help students grasp the significance of the rates, styles, and temporal dependence of geologic phenomena. Student interviews indicate that such videos help them to understand the relationship between processes and landform development. Time-lapse videos have been used extensively in some sciences (e.g., biology - http://sbcf.iu.edu/goodpract/hangarter.html, meteorology - http://www.apple.com/education/hed/aua0101s/meteor/, chemistry - http://www.chem.yorku.ca/profs/hempsted/chemed/home.html) to demonstrate gradual processes that are difficult for many students to visualize. Most geologic processes are slower still, and are consequently even more difficult for students to grasp, yet time-lapse videos are rarely used in earth science classrooms. The advent of inexpensive web-cams and computers provides a new means to explore the temporal dimension of earth surface processes. To test the use of time-lapse videos in geoscience education, we are developing time-lapse movies that record the evolution of two landforms: a stream-table delta and a large, natural, active landslide. The former involves well-known processes in a controlled, repeatable laboratory experiment, whereas the latter tracks the developing dynamics of an otherwise poorly understood slope failure. The stream-table delta is small and grows in ca. 2 days; we capture a frame on an overhead web-cam every 3 minutes. Before seeing the video, students are asked to hypothesize how the delta will grow through time. The final time-lapse video, ca. 20-80 MB, elegantly shows channel migration, progradation rates, and formation of major geomorphic elements (topset, foreset, bottomset beds). The web-cam can also be "zoomed-in" to show smaller-scale processes, such as bedload transfer, and foreset slumping. Post-lab tests and interviews with students indicate that

Geomorphic Effects, Chronologies, and Archaeological Significance of El Nino Floods in Southern Peru

NASA Astrophysics Data System (ADS)

Magilligan, F. J.; Manners, R.; Goldstein, P.

2003-12-01

The catastrophic effects of large floods have been well documented, on both contemporary and paleo-timecales, especially for the conterminous U.S. Less is known, however, about extreme events in hyper-arid sub-tropical climates where synoptic scale meteorological causes, such as El Nino-Southern Oscillation events, are the driving atmospheric mechanism. This research documents the geomorphic effects of extreme floods in the Moquegua River valley of southern Peru, in the core of the Atacama Desert. Using a combination of geomorphic mapping, hydrolologic modeling, aerial photography, ASTER satellite imagery, and GIS, we document the geomorphic signature of large contemporary floods within the mid-valley section (1500 masl) of the Rio Moquegua. Stratigraphic evidence and paleostage indicators of paleofloods, such as slackwater deposits and preserved high level flood gravels, are used to evidence late Holocene paleoflood magnitude-frequency relationships. On contemporary timescales, channel belt expansion by lateral erosion during large floods, such as the recent '97 and '98 floods, correspond to as much as 30-40 hectares of floodplain loss along the 20 km study reach. Sixty years of repeat aerial photography indicates that channel belt expansion and floodplain erosion commonly occurs along the Rio Moquegua. The frequent resetting of floodplain alluvium conditioned by these large floods is supported by radiocarbon dating of floodplain exposures. These dates indicate that most of the contemporary floodplain alluvium is younger that 560 14C yrs BP. The highest terrace remnants date to 3250 14C yrs BP and record a series of overbank flood gravels. Evidence for the regionally extensive Miraflores ENSO flood, ca. 1300 AD, exists in tributary and along mainstem sections. This flood has been documented along the coasts of Northern Chile to northern Peru, and has been evoked to explain significant social collapse. Our field evidence indicates that it catastrophically affected

Continuous catchment-scale monitoring of geomorphic processes with a 2-D seismological array

NASA Astrophysics Data System (ADS)

Burtin, A.; Hovius, N.; Milodowski, D.; Chen, Y.-G.; Wu, Y.-M.; Lin, C.-W.; Chen, H.

2012-04-01

The monitoring of geomorphic processes during extreme climatic events is of a primary interest to estimate their impact on the landscape dynamics. However, available techniques to survey the surface activity do not provide a relevant time and/or space resolution. Furthermore, these methods hardly investigate the dynamics of the events since their detection are made a posteriori. To increase our knowledge of the landscape evolution and the influence of extreme climatic events on a catchment dynamics, we need to develop new tools and procedures. In many past works, it has been shown that seismic signals are relevant to detect and locate surface processes (landslides, debris flows). During the 2010 typhoon season, we deployed a network of 12 seismometers dedicated to monitor the surface processes of the Chenyoulan catchment in Taiwan. We test the ability of a two dimensional array and small inter-stations distances (~ 11 km) to map in continuous and at a catchment-scale the geomorphic activity. The spectral analysis of continuous records shows a high-frequency (> 1 Hz) seismic energy that is coherent with the occurrence of hillslope and river processes. Using a basic detection algorithm and a location approach running on the analysis of seismic amplitudes, we manage to locate the catchment activity. We mainly observe short-time events (> 300 occurrences) associated with debris falls and bank collapses during daily convective storms, where 69% of occurrences are coherent with the time distribution of precipitations. We also identify a couple of debris flows during a large tropical storm. In contrast, the FORMOSAT imagery does not detect any activity, which somehow reflects the lack of extreme climatic conditions during the experiment. However, high resolution pictures confirm the existence of links between most of geomorphic events and existing structures (landslide scars, gullies...). We thus conclude to an activity that is dominated by reactivation processes. It

Geomorphic versus land use controls on suspended sediment rating curves

NASA Astrophysics Data System (ADS)

Belmont, P.; Vaughan, A. A.; Fisher, A. C. N.

2017-12-01

The relation between river discharge (Q) and suspended sediment (SS) concentration reflects the degree to which sediment sources are accessed or depleted across the range of flow conditions. Increased availability of high resolution topography and land use data greatly enhance our ability to evaluate linkages between characteristics of these sediment rating curves (SRCs) and the geomorphic features that influence them. We evaluated Q-SS relations at 45 gages throughout Minnesota, USA representing a wide variety of landscape settings in terms of topography, land use, and geologic history. We characterized the SRCs according to the overall shape, steepness (exponent), vertical offset (coefficient) and SS concentration under low flow (90% exceedance) conditions. Rivers exhibited three distinct SRC shapes, simple power functions, threshold power functions and peaked power functions. We used random forest models to analyze relations between SRC parameters and attributes of the watershed as well as the near-channel environment. The model correctly classified 78% of SRC shapes and explained 60% of variance in the SRC exponent, 43% of the SRC coefficient for rising limb samples, and 45% of variance under low flow conditions. Notably, the random forest models predict that near-channel morphology predominately controls both the shape and steepness of the sediment rating curves. Land use predominately controls the vertical offset (coefficient) and SS concentration under low flow conditions. These findings suggest that land use and watershed restoration practices may have little capacity to alter the shape and steepness of these curves as these characteristics may be dictated by the geologic and geomorphic setting. Rather, human influences in the watershed may exhibit the greatest influence on suspended sediment concentrations at moderate to low flows. Criteria to evaluate improvements in water quality as a result of changes in land management might be most meaningful if they

Predicting geomorphically-induced flood risk for the Nepalese Terai communities

NASA Astrophysics Data System (ADS)

Dingle, Elizabeth; Creed, Maggie; Attal, Mikael; Sinclair, Hugh; Mudd, Simon; Borthwick, Alistair; Dugar, Sumit; Brown, Sarah

2017-04-01

Rivers sourced from the Himalaya irrigate the Indo-Gangetic Plain via major river networks that support 10% of the global population. However, many of these rivers are also the source of devastating floods. During the 2014 Karnali River floods in west Nepal, the Karnali rose to around 16 m at Chisapani (where it enters the Indo-Gangetic Plain), 1 m higher than the previous record in 1983; the return interval for this event was estimated to be 1000 years. Flood risk may currently be underestimated in this region, primarily because changes to the channel bed are not included when identifying areas at risk of flooding from events of varying recurrence intervals. Our observations in the field, corroborated by satellite imagery, show that river beds are highly mobile and constantly evolve through each monsoon. Increased bed levels due to sediment aggradation decreases the capacity of the river, increasing significantly the risk of devastating flood events; we refer to these as 'geomorphically-induced floods'. Major, short-lived episodes of sediment accumulation in channels are caused by stochastic variability in sediment flux generated by storms, earthquakes and glacial outburst floods from upstream parts of the catchment. Here, we generate a field-calibrated, geomorphic flood risk model for varying upstream scenarios, and predict changing flood risk for the Karnali River. A numerical model is used to carry out a sensitivity analysis of changes in channel geometry (particularly aggradation or degradation) based on realistic flood scenarios. In these scenarios, water and sediment discharge are varied within a range of plausible values, up to extreme sediment and water fluxes caused by widespread landsliding and/or intense monsoon precipitation based on existing records. The results of this sensitivity analysis will be used to inform flood hazard maps of the Karnali River floodplain and assess the vulnerability of the populations in the region.

Geomorphic Transport Laws and the Statistics of Topography and Stratigraphy

NASA Astrophysics Data System (ADS)

Schumer, R.; Taloni, A.; Furbish, D. J.

2016-12-01

Geomorphic transport laws take the form of partial differential equations in which sediment motion is a deterministic function of slope. The addition of a noise term, representing unmeasurable, or subgrid scale autogenic forcing, reproduces scaling properties similar to those observed in topography, landforms, and stratigraphy. Here we describe a transport law that generalizes previous equations by permitting transport that is local or non-local in addition to different types of noise. More importantly, we use this transport law to link the character of sediment transport to the statistics of topography and stratigraphy. In particular, we link the origin of the Sadler effect to the evolution of the earth surface via a transport law.

The Changing Geomorphic Template of Native Fish Habitat of the Lower San Rafael River, Utah

NASA Astrophysics Data System (ADS)

Fortney, S. T.; Dean, D. J.; Schmidt, J. C.

2010-12-01

The physical template of the aquatic ecosystem of the lower San Rafael River (UT) changed dramatically during the 20th century. 1938 aerial photographs depict a channel comprised of multiple threads with numerous bars. The river has since been transformed into a single-thread channel with a low width-to-depth ratio. The drastic changes in the channel geometry have resulted in severely degraded habitat conditions. Despite these changes in habitat quality and quantity, roundtail chub, flannelmouth sucker, and bluehead sucker are still found in isolated patches of complex habitat. Three factors are primarily responsible for changes in the channel geomorphology: (1) reduced magnitude and duration of the spring snowmelt flood, (2) dense establishment of tamarisk (Tamarix spp) throughout the alluvial valley, and (3) continued supply of fine sediment from ephemeral tributaries. We determined the degree and rate of geomorphic change by analyzing spatially-rich data extracted from aerial photographs and temporally-rich data recorded at USGS gage 09328500. We evaluated channel morphologic processes by interpreting stratigraphy in floodplain trenches and dated these alluvial deposits using dendro-geomorphic techniques. We correlated the flood record to floodplain deposits, thus determining the role of floods in shaping the present channel. Aerial photography analysis shows that a 10-km reach cumulatively narrowed 62% during a span of 44 years. Between 1949 and 1970, the channel cross-section at USGS gage 09328500 narrowed by 60% and incised its bed approximately 1.2 m. Rating relations since the 1980’s provide corroborative evidence that channel narrowing and reduction in channel capacity continues; today, parts of the channel bed are on bedrock, thereby preventing further incision. Stratigraphy observed in a 40-m long trench demonstrates that the channel has narrowed by oblique and vertical accretion processes. Dendrogeomorphic results elucidate the relative role of

Geomorphic Evidence for Martian Ground Ice and Climate Change

NASA Technical Reports Server (NTRS)

Kanner, L. C.; Allen, C. C.; Bell, M. S.

2004-01-01

Recent results from gamma-ray and neutron spectrometers on Mars Odyssey indicate the presence of a hydrogen-rich layer tens of centimeters thick in the uppermost meter in high latitudes (greater than 60) on Mars. This hydrogen-rich layer correlates to regions of ice stability. Thus, the subsurface hydrogen is thought to be water ice constituting 35 plus or minus 15% by weight near the north and south polar regions. We refine the location of subsurface ice deposits at a less than km scale by combining existing spectroscopy data with surface features indicative of subsurface ice. A positive correlation between spectroscopy data and geomorphic ice indicators has been previously suggested for high latitudes. Here we expand the comparative study to northern mid latitudes (30 degrees N- 65 degrees N).

Automated identification of stream-channel geomorphic features from high‑resolution digital elevation models in West Tennessee watersheds

USGS Publications Warehouse

Cartwright, Jennifer M.; Diehl, Timothy H.

2017-01-17

High-resolution digital elevation models (DEMs) derived from light detection and ranging (lidar) enable investigations of stream-channel geomorphology with much greater precision than previously possible. The U.S. Geological Survey has developed the DEM Geomorphology Toolbox, containing seven tools to automate the identification of sites of geomorphic instability that may represent sediment sources and sinks in stream-channel networks. These tools can be used to modify input DEMs on the basis of known locations of stormwater infrastructure, derive flow networks at user-specified resolutions, and identify possible sites of geomorphic instability including steep banks, abrupt changes in channel slope, or areas of rough terrain. Field verification of tool outputs identified several tool limitations but also demonstrated their overall usefulness in highlighting likely sediment sources and sinks within channel networks. In particular, spatial clusters of outputs from multiple tools can be used to prioritize field efforts to assess and restore eroding stream reaches.

Geomorphic investigation of craters in Alba Mons, Mars: Implications for Late Amazonian glacial activity in the region

NASA Astrophysics Data System (ADS)

Sinha, Rishitosh K.; Vijayan, S.

2017-09-01

Evidence for mid-high latitude glacial episodes existing within the Late Amazonian history of Mars has been reported from analysis of variety of glacial/periglacial landforms and their stratigraphic relationships. In this study, using the Context Camera (CTX) images, we have surveyed the interior of craters within the Alba Mons region of Mars (30°-60°N; 80°-140°W) to decipher the presence of ice-related flow features. The primary goals of this study are to (1) suggest from observations that the flow features identified in the interior of Alba Mons craters have flow characteristic possibly different from concentric crater fill (CCF) landforms and (2) interpret the extent of glacial activity that led to formation of flow features with respect to previously described mid-latitude ice-related landforms. Our geomorphic investigation revealed evidence for the presence of tongue-like or lobate shaped ice-related flow feature from the interior of ∼346 craters in the study region. The presence of ring-mold crater morphologies and brain-terrain texture preserved on the surface of flow features suggests that they are possibly formed of near-surface ice-rich bodies. We found that these flow features tend to form inside both the smaller (<5 km) and larger (>5 km) diameter craters emplaced at a wide range of elevation (from ∼ -3.3 km to 6.1 km). The measurement of overall length and flow direction of flow features is suggestive that they are similar to pole-facing small-scale lobate debris apron (LDA) formed inside craters. Crater size-frequency distribution of these small-scale LDAs reveals a model age of ∼10-100 Ma. Together with topographic and geomorphic observations, orientation measurements, and distribution within the study region, we suggest that the flow features (identified as pole-facing small-scale LDAs in the interior of craters) have flow characteristic possibly different from CCF landforms. Our observations and findings support the results of previous

Clay mineralogy in different geomorphic surfaces in sugarcane areas

NASA Astrophysics Data System (ADS)

Camargo, L.; Marques, J., Jr.

2012-04-01

The crystallization of the oxides and hydroxides of iron and aluminum and kaolinite of clay fraction is the result of pedogenetic processes controlled by the relief. These minerals have influence on the physical and chemical attributes of soil and exhibit spatial dependence. The pattern of spatial distribution is influenced by forms of relief as the geomorphic surfaces. In this sense, the studies aimed at understanding the relationship between relief and the distribution pattern of the clay fraction attributes contribute to the delineation of specific areas of management in the field. The objective of this study was to evaluate the spatial distribution of oxides and hydroxides of iron and aluminum and kaolinite of clay fraction and its relationship with the physical and chemical attributes in different geomorphic surfaces. Soil samples were collected in a transect each 25 m (100 samples) and in the sides of the same (200 samples) as well as an area of 500 ha (1 sample each six hectare). Geomorphic surfaces (GS) in the transect were mapped in detail to support mapping the entire area. The soil samples were taken to the laboratory for chemical, physical, and mineralogical analysis, and the pattern of spatial distribution of soil attributes was obtained by statistics and geostatistics. The GS I is considered the oldest surface of the study area, with depositional character, and a slope ranging from 0 to 4%. GS II and III are considered to be eroded, and the surface II plan a gentle slope that extends from the edge of the surface until the beginning of I and III. The crystallographic characteristics of the oxides and hydroxides of iron and aluminum and kaolinite showed spatial dependence and the distribution pattern corresponding to the limits present of the GS in the field. Surfaces I and II showed the best environments to the degree of crystallinity of hematite and the surface III to the greatest degree of crystallinity of goethite agreeing to the pedoenvironment

The history of human-induced soil erosion: Geomorphic legacies, early descriptions and research, and the development of soil conservation—A global synopsis

NASA Astrophysics Data System (ADS)

Dotterweich, Markus

2013-11-01

This paper presents a global synopsis about the geomorphic evidence of soil erosion in humid and semihumid areas since the beginning of agriculture. Historical documents, starting from ancient records to data from the mid-twentieth century and numerous literature reviews form an extensive assortment of examples that show how soil erosion has been perceived previously by scholars, land surveyors, farmers, land owners, researchers, and policy makers. Examples have been selected from ancient Greek and Roman Times and from central Europe, southern Africa, North America, the Chinese Loess Plateau, Australia, New Zealand, and Easter Island. Furthermore, a comprehensive collection on the development of soil erosion research and soil conservation has been provided, with a particular focus on Germany and the USA. Geomorphic evidence shows that most of the agriculturally used slopes in the Old and New Worlds had already been affected by soil erosion in earlier, prehistoric times. Early descriptions of soil erosion are often very vague. With regard to the Roman Times, geomorphic evidence shows seemingly opposing results, ranging from massive devastation to landscapes remaining stable for centuries. Unfortunately, historical documentation is lacking. In the following centuries, historical records become more frequent and more precise and observations on extreme soil erosion events are prominent. Sometimes they can be clearly linked to geomorphic evidence in the field. The advent of professional soil conservation took place in the late eighteenth century. The first extensive essay on soil conservation known to the Western world was published in Germany in 1815. The rise of professional soil conservation occurred in the late nineteenth and early twentieth centuries. Soil remediation and flood prevention programs were initiated, but the long-term success of these actions remains controversial. In recent years, increasing interest is to recover any traditional knowledge of soil

Comparison of Terrestrial Laser Scanning (TLS) and Structure from Motion (SfM) photogrammetry from unmanned aerial systems (UAS) for geomorphic change detection in beach-dune systems.

NASA Astrophysics Data System (ADS)

Heathfield, D.; Walker, I. J.; Grilliot, M. J.

2016-12-01

The recent emergence of terrestrial laser scanning (TLS) and unmanned aerial systems (UAS) as mapping platforms in geomorphology research has allowed for expedited acquisition of high spatial and temporal resolution, three-dimensional topographic datasets. TLS provides dense 3D `point cloud' datasets that require careful acquisition strategies and appreciable post-processing to produce accurate digital elevation models (DEMs). UAS provide overlapping nadir and oblique imagery that can be analysed using Structure from Motion (SfM) photogrammetry software to provide accurate, high-resolution orthophoto mosaics and accurate digital surface models (DSMs). Both methods yield centimeter to decimeter scale accuracy, depending on various hardware and field acquisition considerations (e.g., camera resolution, flight height, on-site GNSS control, etc.). Combined, the UAS-SfM workflow provides a comparable and more affordable solution to the more expensive TLS or aerial LiDAR methods. This paper compares and contrasts SfM and TLS survey methodologies and related workflow costs and benefits as used to quantify and examine seasonal beach-dune erosion and recovery processes at a site (Calvert Island) on British Columbia's central coast in western Canada. Seasonal SfM- and TLS-derived DEMs were used to quantify spatial patterns of surface elevation change, geomorphic responses, and related significant sediment volume changes. Cluster maps of positive (depositional) and negative (erosional) change are analysed to detect and interpret the geomorphic and sediment budget responses following an erosive water level event during winter 2016 season (Oct. 2015 - Apr. 2016). Vantage cameras also provided qualitative data on the frequency and magnitude of environmental drivers (e.g., tide, wave, wind forcing) of erosion and deposition events during the observation period. In addition, we evaluate the costs, time expenditures, and accuracy considerations for both SfM and TLS methodologies.

Large-scale dam removal on the Elwha River, Washington, USA: river channel and floodplain geomorphic change

USGS Publications Warehouse

East, Amy E.; Pess, George R.; Bountry, Jennifer A.; Magirl, Christopher S.; Ritchie, Andrew C.; Logan, Joshua; Randle, Timothy J.; Mastin, Mark C.; Minear, Justin T.; Duda, Jeffrey J.; Liermann, Martin C.; McHenry, Michael L.; Beechie, Timothy J.; Shafroth, Patrick B.

2015-01-01

As 10.5 million t (7.1 million m3) of sediment was released from two former reservoirs, downstream dispersion of a sediment wave caused widespread bed aggradation of ~ 1 m (greater where pools filled), changed the river from pool–riffle to braided morphology, and decreased the slope of the lowermost river. The newly deposited sediment, which was finer than most of the pre-dam-removal bed, formed new bars (largely pebble, granule, and sand material), prompting aggradational channel avulsion that increased the channel braiding index by almost 50%. As a result of mainstem bed aggradation, floodplain channels received flow and accumulated new sediment even during low to moderate flow conditions. The river system showed a two- to tenfold greater geomorphic response to dam removal (in terms of bed elevation change magnitude) than it had to a 40-year flood event four years before dam removal. Two years after dam removal began, as the river had started to incise through deposits of the initial sediment wave, ~ 1.2 million t of new sediment (~ 10% of the amount released from the two reservoirs) was stored along 18 river km of the mainstem channel and 25 km of floodplain channels. The Elwha River thus was able to transport most of the released sediment to the river mouth. The geomorphic alterations and changing bed sediment grain size along the Elwha River have important ecological implications, affecting aquatic habitat structure, benthic fauna, salmonid fish spawning and rearing potential, and riparian vegetation. The response of the river to dam removal represents a unique opportunity to observe and quantify fundamental geomorphic processes associated with a massive sediment influx, and also provides important lessons for future river-restoration endeavors.

Comprehensive Representation of Hydrologic and Geomorphic Process Coupling in Numerical Models: Internal Dynamics and Basin Evolution

NASA Astrophysics Data System (ADS)

Istanbulluoglu, E.; Vivoni, E. R.; Ivanov, V. Y.; Bras, R. L.

2005-12-01

Landscape morphology has an important control on the spatial and temporal organization of basin hydrologic response to climate forcing, affecting soil moisture redistribution as well as vegetation function. On the other hand, erosion, driven by hydrology and modulated by vegetation, produces landforms over geologic time scales that reflect characteristic signatures of the dominant land forming process. Responding to extreme climate events or anthropogenic disturbances of the land surface, infrequent but rapid forms of erosion (e.g., arroyo development, landsliding) can modify topography such that basin hydrology is significantly influenced. Despite significant advances in both hydrologic and geomorphic modeling over the past two decades, the dynamic interactions between basin hydrology, geomorphology and terrestrial ecology are not adequately captured in current model frameworks. In order to investigate hydrologic-geomorphic-ecologic interactions at the basin scale we present initial efforts in integrating the CHILD landscape evolution model (Tucker et al. 2001) with the tRIBS hydrology model (Ivanov et al. 2004), both developed in a common software environment. In this talk, we present preliminary results of the numerical modeling of the coupled evolution of basin hydro-geomorphic response and resulting landscape morphology in two sets of examples. First, we discuss the long-term evolution of both the hydrologic response and the resulting basin morphology from an initially uplifted plateau. In the second set of modeling experiments, we implement changes in climate and land-use to an existing topography and compare basin hydrologic response to the model results when landscape form is fixed (e.g. no coupling between hydrology and geomorphology). Model results stress the importance of internal basin dynamics, including runoff generation mechanisms and hydrologic states, in shaping hydrologic response as well as the importance of employing comprehensive

Associations of stream geomorphic conditions and prevalence of alternative reproductive tactics among sockeye salmon populations

USGS Publications Warehouse

DeFilippo, L. B.; Schindler, D.E.; Carter, J.L.; Walsworth, Timothy E.; Cline, T. J.; Larson, Wesley; Buehrens, T.

2018-01-01

In many species, males may exhibit alternative life histories to circumvent the costs of intrasexual competition and female courtship. While the evolution and underlying genetic and physiological mechanisms behind alternative reproductive tactics are well studied, there has been less consideration of the ecological factors that regulate their prevalence. Here, we examine six decades of age composition records from thirty‐six populations of sockeye salmon (Oncorhynchus nerka) to quantify associations between spawning habitat characteristics and the prevalence of precocious sneakers known as ‘jacks’. Jack prevalence was independent of neutral genetic structure among stream populations, but varied among habitat types and as a function of continuous geomorphic characteristics. Jacks were more common in streams relative to beaches and rivers, and their prevalence was negatively associated with stream width, depth, elevation, slope and area, but positively related to bank cover. Behavioural observations showed that jacks made greater use of banks, wood and shallows than guard males, indicating that their reproductive success depends on the availability of such refuges. Our results emphasize the role of the physical habitat in shaping reproductive tactic frequencies among populations, likely through local adaptation in response to variable fitness expectations under different geomorphic conditions.

Geomorphic and hydrologic assessment of erosion hazards at the Norman municipal landfill, Canadian River floodplain, central Oklahoma

USGS Publications Warehouse

Curtis, Jennifer A.; Whitney, John W.

2003-01-01

The Norman, Oklahoma, municipal landfill closed in 1985 after 63 years of operation, because it was identified as a point source of hazardous leachate composed of organic and inorganic compounds. The landfill is located on the floodplain of the Canadian River, a sand-bed river characterized by erodible channel boundaries and by large variation in mean monthly discharges. In 1986, floodwaters eroded riprap protection at the southern end of the landfill and penetrated the landfill's clay cap, thereby exposing the landfill contents. The impact of this moderate-magnitude flood event (Q12) was the catalyst to investigate erosion hazards at the Norman landfill. This geomorphic investigation analyzed floodplain geomorphology and historical channel changes, flood-frequency distributions, an erosion threshold, the geomorphic effectiveness of discharge events, and other factors that influence erosion hazards at the landfill site. The erosion hazard at the Norman landfill is a function of the location of the landfill with respect to the channel thalweg, erosional resistance of the channel margins, magnitude and duration of discrete discharge events, channel form and hydraulic geometry, and cumulative effects related to a series of discharge events. Based on current climatic conditions and historical channel changes, a minimum erosion threshold is set at bankfull discharge (Q = 572 m3/s). The annual probability of exceeding this threshold is 0.53. In addition, this analysis indicates that peak stream power is less informative than total energy expenditures when estimating the erosion potential or geomorphic effectiveness of discrete discharge events. On the Canadian River, long-duration, moderate-magnitude floods can have larger total energy expenditures than shorter-duration, high-magnitude floods and therefore represent the most serious erosion hazard to floodplain structures.

Comparison of multipoint linkage analyses for quantitative traits in the CEPH data: parametric LOD scores, variance components LOD scores, and Bayes factors.

PubMed

Sung, Yun Ju; Di, Yanming; Fu, Audrey Q; Rothstein, Joseph H; Sieh, Weiva; Tong, Liping; Thompson, Elizabeth A; Wijsman, Ellen M

2007-01-01

We performed multipoint linkage analyses with multiple programs and models for several gene expression traits in the Centre d'Etude du Polymorphisme Humain families. All analyses provided consistent results for both peak location and shape. Variance-components (VC) analysis gave wider peaks and Bayes factors gave fewer peaks. Among programs from the MORGAN package, lm_multiple performed better than lm_markers, resulting in less Markov-chain Monte Carlo (MCMC) variability between runs, and the program lm_twoqtl provided higher LOD scores by also including either a polygenic component or an additional quantitative trait locus.

Geomorphic Evolution of Sputnik Planum and Surrounding Terrain

NASA Astrophysics Data System (ADS)

Howard, A. D.; Moore, J. M.; White, O. L.; Umurhan, O. M.; Schenk, P.; Beyer, R. A.; McKinnon, W. B.; Singer, K. N.; Spencer, J. R.; Stern, A.; Weaver, H. A., Jr.; Young, L. A.; Ennico Smith, K.; Olkin, C.

2015-12-01

The informally-named Sputnik Planum is a vast expanse (about 835 km east-west and 1500 km north-south) of N2, CH4, and CO ices which appears craterless at current resolutions, but which gives evidence of both glacial and convective flow in the ices (Stern and the New Horizons Team, Science, 2015). This ice field is surrounded by uplands of varying morphology from hilly terrain to the northeast, plains of apparent ices interspersed with rough terrain to the east, and textured ice surrounding the mountainous terrain to the southwest. The morphology and composition of this bordering terrain will provide clues to the long-term evolution of Sputnik Planum as higher resolution visual and spectral imaging of this region are returned from the New Horizons spacecraft over the next few months. Interactions between Sputnik Planum and surrounding terrain may have involved glacial erosion and deposition. The geomorphic evolution of this region will be discussed in the context of newly-returned encounter data.

Stability Test and Quantitative and Qualitative Analyses of the Amino Acids in Pharmacopuncture Extracted from Scolopendra subspinipes mutilans

PubMed Central

Cho, GyeYoon; Han, KyuChul; Yoon, JinYoung

2015-01-01

Objectives: Scolopendra subspinipes mutilans (S. subspinipes mutilans) is known as a traditional medicine and includes various amino acids, peptides and proteins. The amino acids in the pharmacopuncture extracted from S. subspinipes mutilans by using derivatization methods were analyzed quantitatively and qualitatively by using high performance liquid chromatography (HPLC) over a 12 month period to confirm its stability. Methods: Amino acids of pharmacopuncture extracted from S. subspinipes mutilans were derived by using O-phthaldialdehyde (OPA) & 9-fluorenyl methoxy carbonyl chloride (FMOC) reagent and were analyzed using HPLC. The amino acids were detected by using a diode array detector (DAD) and a fluorescence detector (FLD) to compare a mixed amino acid standard (STD) to the pharmacopuncture from centipedes. The stability tests on the pharmacopuncture from centipedes were done using HPLC for three conditions: a room temperature test chamber, an acceleration test chamber, and a cold test chamber. Results: The pharmacopuncture from centipedes was prepared by using the method of the Korean Pharmacopuncture Institute (KPI) and through quantitative analyses was shown to contain 9 amino acids of the 16 amino acids in the mixed amino acid STD. The amounts of the amino acids in the pharmacopuncture from centipedes were 34.37 ppm of aspartate, 123.72 ppm of arginine, 170.63 ppm of alanine, 59.55 ppm of leucine and 57 ppm of lysine. The relative standard deviation (RSD %) results for the pharmacopuncture from centipedes had a maximum value of 14.95% and minimum value of 1.795% on the room temperature test chamber, the acceleration test chamber and the cold test chamber stability tests. Conclusion: Stability tests on and quantitative and qualitative analyses of the amino acids in the pharmacopuncture extracted from centipedes by using derivatization methods were performed by using HPLC. Through research, we hope to determine the relationship between time and the

Environmental Controls and Eco-geomorphic Interactions of the Barchan-to-parabolic Dune Stabilisation and the Parabolic-to-barchan Dune Reactivation

NASA Astrophysics Data System (ADS)

Yan, Na; Baas, Andreas

2015-04-01

Parabolic dunes are one of a few common aeolian landforms which are highly controlled by eco-geomorphic interactions. Parabolic dunes, on the one hand, can be developed from highly mobile dune landforms, barchans for instance, in an ameliorated vegetation condition; or on the other hand, they can be reactivated and transformed back into mobile dunes due to vegetation deterioration. The fundamental mechanisms and eco-geomorphic interactions controlling both dune transformations remain poorly understood. To bridge the gap between complex processes involved in dune transformations on a relatively long temporal scale and real world monitoring records on a very limited temporal scale, this research has extended the DECAL model to incorporate 'dynamic' growth functions and the different 'growth' of perennial shrubs between growing and non-growing seasons, informed by field measurements and remote sensing analysis, to explore environmental controls and eco-geomorphic interactions of both types of dune transformation. A non-dimensional 'dune stabilising index' is proposed to capture the interactions between environmental controls (i.e. the capabilities of vegetation to withstand wind erosion and sand burial, the sandy substratum thickness, the height of the initial dune, and the sand transport potential), and establish the linkage between these controls and the geometry of a stabilising dune. An example demonstrates how to use the power-law relationship between the dune stabilising index and the normalised migration distance to assist in extrapolating the historical trajectories of transforming dunes. The modelling results also show that a slight increase in vegetation cover of an initial parabolic dune can significantly increase the reactivation threshold of climatic impact (both drought stress and wind strength) required to reactivate a stabilising parabolic dune into a barchan. Four eco-geomorphic interaction zones that govern a barchan-to-parabolic dune transformation

Geomorphic Segmentation, Hydraulic Geometry, and Hydraulic Microhabitats of the Niobrara River, Nebraska - Methods and Initial Results

USGS Publications Warehouse

Alexander, Jason S.; Zelt, Ronald B.; Schaepe, Nathaniel J.

2009-01-01

The Niobrara River of Nebraska is a geologically, ecologically, and economically significant resource. The State of Nebraska has recognized the need to better manage the surface- and ground-water resources of the Niobrara River so they are sustainable in the long term. In cooperation with the Nebraska Game and Parks Commission, the U.S. Geological Survey is investigating the hydrogeomorphic settings and hydraulic geometry of the Niobrara River to assist in characterizing the types of broad-scale physical habitat attributes that may be of importance to the ecological resources of the river system. This report includes an inventory of surface-water and ground-water hydrology data, surface water-quality data, a longitudinal geomorphic segmentation and characterization of the main channel and its valley, and hydraulic geometry relations for the 330-mile section of the Niobrara River from Dunlap Diversion Dam in western Nebraska to the Missouri River confluence. Hydraulic microhabitats also were analyzed using available data from discharge measurements to demonstrate the potential application of these data and analysis methods. The main channel of the Niobrara was partitioned into three distinct fluvial geomorphic provinces: an upper province characterized by open valleys and a sinuous, equiwidth channel; a central province characterized by mixed valley and channel settings, including several entrenched canyon reaches; and a lower province where the valley is wide, yet restricted, but the river also is wide and persistently braided. Within the three fluvial geomorphic provinces, 36 geomorphic segments were identified using a customized, process-orientated classification scheme, which described the basic physical characteristics of the Niobrara River and its valley. Analysis of the longitudinal slope characteristics indicated that the Niobrara River longitudinal profile may be largely bedrock-controlled, with slope inflections co-located at changes in bedrock type at

Cloning, characterisation, and comparative quantitative expression analyses of receptor for advanced glycation end products (RAGE) transcript forms.

PubMed

Sterenczak, Katharina A; Willenbrock, Saskia; Barann, Matthias; Klemke, Markus; Soller, Jan T; Eberle, Nina; Nolte, Ingo; Bullerdiek, Jörn; Murua Escobar, Hugo

2009-04-01

RAGE is a member of the immunoglobulin superfamily of cell surface molecules playing key roles in pathophysiological processes, e.g. immune/inflammatory disorders, Alzheimer's disease, diabetic arteriosclerosis and tumourigenesis. In humans 19 naturally occurring RAGE splicing variants resulting in either N-terminally or C-terminally truncated proteins were identified and are lately discussed as mechanisms for receptor regulation. Accordingly, deregulation of sRAGE levels has been associated with several diseases e.g. Alzheimer's disease, Type 1 diabetes, and rheumatoid arthritis. Administration of recombinant sRAGE to animal models of cancer blocked tumour growth successfully. In spite of its obvious relationship to cancer and metastasis data focusing sRAGE deregulation and tumours is rare. In this study we screened a set of tumours, healthy tissues and various cancer cell lines for RAGE splicing variants and analysed their structure. Additionally, we analysed the ratio of the mainly found transcript variants using quantitative Real-Time PCR. In total we characterised 24 previously not described canine and 4 human RAGE splicing variants, analysed their structure, classified their characteristics, and derived their respective protein forms. Interestingly, the healthy and the neoplastic tissue samples showed in majority RAGE transcripts coding for the complete receptor and transcripts showing insertions of intron 1.

A GIS-Based Model for the analysis of an urban flash flood and its hydro-geomorphic response. The Valencia event of 1957

NASA Astrophysics Data System (ADS)

Portugués-Mollá, I.; Bonache-Felici, X.; Mateu-Bellés, J. F.; Marco-Segura, J. B.

2016-10-01

Flash floods are recurrent events around the Mediterranean region. Extreme episodes activate hydro-geomorphic high-intensity processes with low frequency. In urban environments, the complexity becomes higher due to the existence of very quick-response runoff. However, immediate recovery works remove the urban marks. After a short time both the significance and magnitude of the hydro-geomorphic event become completely unrecognizable. Nevertheless, these episodes generate extensive documentation which is testimony of the processes in almost real time. It is necessary to exploit this source typology in order to draw flood sketches when events far in time may lack a sufficiently rich database. This is particularly the case for the Valencia flash flood (October 1957), located in the lower Turia River basin (Eastern Spain). It left numerous pieces of hydro-geomorphic evidence, but its tracks were covered a short while after the flood. In any case, it remains part of a non-systematic legacy that has not yet been exploited, consisting of immediate aerial and oblique high resolution photography, pictures at street level, water marks and administrative records. Paradoxically, despite being considered a milestone in metropolitan territorial planning (the river was definitely diverted), an accurate reconstruction of the hydraulic behaviour was required from an integrated point of view. To this aim, the development of a GIS-Based Model enabled the utilisation of the above-mentioned materials. This non-conventional information was treated jointly from a new perspective. It provided database support through a vast amount of organised, structured and georeferenced information about the 1957 event. In a second stage, the GBM made it possible to characterise the Turia urban reach and interpret both the hydro-geomorphic (trenches along barrier beaches, erosion, deposition, etc.) and hydraulic (urban streams along the streets, flow directions, flood extent, levees breaks, overflows

A Sediment Transport Based Geomorphic Analysis of the Skykomish River Braided Reach to Identify "Restoration" Opportunities

NASA Astrophysics Data System (ADS)

Devries, P.; Aldrich, R.; Brunzell, S.; Purser, M.

2004-12-01

A study is underway to assess the driving sediment transport and hydraulic processes influencing channel changes in a braided reach of the Skykomish River, Washington. The reach is located below a steeper, confined section of the river and has likely been geomorphically active since the last glaciation. Bankfull widths range between roughly 100-350 m within, and drainage area is 1,500 km2 above, the study reach. Analyses have been conducted at the reach scale, and include development of a sediment transport model, historical photograph and survey overlays, and an accounting of where sediment deposition, channel shifts and avulsions, and side channel connection are most and least likely to occur over reasonable design life spans (e.g., between 10 and 50 years). The ultimate goal of the analysis is to identify suitable locations for projects that will enhance, restore, or protect fish habitat as well as protect infrastructure, while considering constraints posed by channel hydraulic, sediment transport/deposition, and stability characteristics. Our strategy is to determine what types of projects are best suited for different locations in the reach based on the analysis results. The results can then be used to prioritize and estimate costs for project alternatives.

Bend-scale geomorphic classification and assessment of the Lower Missouri River from Sioux City, Iowa, to the Mississippi River for application to pallid sturgeon management

USGS Publications Warehouse

Jacobson, Robert B.; Colvin, Michael E.; Bulliner, Edward A.; Pickard, Darcy; Elliott, Caroline M.

2018-06-07

Management actions intended to increase growth and survival of pallid sturgeon (Scaphirhynchus albus) age-0 larvae on the Lower Missouri River require a comprehensive understanding of the geomorphic habitat template of the river. The study described here had two objectives relating to where channel-reconfiguration projects should be located to optimize effectiveness. The first objective was to develop a bend-scale (that is, at the scale of individual bends, defined as “cross-over to cross-over”) geomorphic classification of the Lower Missouri River to help in the design of monitoring and evaluation of such projects. The second objective was to explore whether geomorphic variables could provide insight into varying capacities of bends to intercept drifting larvae. The bend-scale classification was based on geomorphic and engineering variables for 257 bends from Sioux City, Iowa, to the confluence with the Mississippi River near St. Louis, Missouri. We used k-means clustering to identify groupings of bends that shared the same characteristics. Separate 3-, 4-, and 6-cluster classifications were developed and mapped. The three classifications are nested in a hierarchical structure. We also explored capacities of bends to intercept larvae through evaluation of linear models that predicted persistent sand area or catch per unit effort (CPUE) of age-0 sturgeon as a function of the same geomorphic variables used in the classification. All highly ranked models that predict persistent sand area contained mean channel width and standard deviation of channel width as significant variables. Some top-ranked models also included contributions of channel sinuosity and density of navigation structures. The sand-area prediction models have r-squared values of 0.648–0.674. In contrast, the highest-ranking CPUE models have r-squared values of 0.011–0.170, indicating much more uncertainty for the biological response variable. Whereas the persistent sand model documents that

Explaining linkages (and lack of) between riparian vegetation biodiversity and geomorphic complexity in restored streams of northern Sweden

NASA Astrophysics Data System (ADS)

Polvi, Lina; Maher Hasselquist, Eliza; Nilsson, Christer

2014-05-01

Ecological theory suggests that species richness and habitat heterogeneity are positively correlated; therefore stream restoration often relies on increasing geomorphic complexity to promote biodiversity. However, past studies have failed to demonstrate a link between post-restoration biodiversity and geomorphic complexity. These studies have usually relied on only one metric for quantifying complexity, rather than a holistic metric for complexity that represents several aspects of the channel morphology, and have based their observations in catchments with widespread land-use impacts. We use a geomorphic complexity gradient based on five geomorphic aspects (longitudinal, cross-sectional, planform, sediment texture, and instream wood) to determine whether streams with higher levels of complexity also have greater riparian vegetation biodiversity. We also compare biodiversity values with the potential complexity of reaches based on the large-scale controls of valley and channel gradient and the presence of large glacial legacy sediment (boulders). We focus on tributary channels in boreal forests of northern Sweden, where stream modification associated with log-floating from the 1850s to the 1960s created highly simplified channels. Driven by concerns for fish, restoration began in the 1970s by returning large cobbles and boulders into the main channel from the channel edge, and evolved into 'demonstration restoration,' placing very large boulders and trees into the channel, reopening side channels, and constructing fish spawning areas. We evaluate 22 reaches along tributaries of the Vindel River in northern Sweden with four restoration statuses: channelized, restored, demonstration restored, and unimpacted. Detailed morphologic, sediment, and instream wood data allow calculation of 29 metrics of geomorphic complexity, from which a complexity gradient was identified using multivariate statistics. The percent cover of riparian vegetation was identified in 0.5 x 0.5 m

Diatom-sedimentation feedback generates a self-organized geomorphic landscape on intertidal mudflats (Invited)

NASA Astrophysics Data System (ADS)

van de Koppel, J.; Weerman, E.; Herman, P.

2010-12-01

During spring, intertidal flats can exhibit strikingly regular spatial patterns of diatom-covered hummocks alternating with almost bare, water-filled hollows. We hypothesize that 1) the formation of this geomorphic landscape is caused by a strong interaction between benthic diatoms and sediment dynamics, inducing spatial self-organization, and 2) that self-organization affects ecosystem functioning by increasing the net average sedimentation on the tidal flat. We present a combined empirical and mathematical study to test the first hypothesis. We determined how the sediment erosion threshold varied with diatom cover and elevation. Our results were incorporated into a mathematical model to investigate whether the proposed mechanism could explain the formation of the observed patterns. Our mathematical model confirmed that the interaction between sedimentation, diatom growth and water redistribution could induce the formation of regular patterns on the intertidal mudflat. The model predicts that areas exhibiting spatially-self-organized patterns have increased sediment accretion and diatom biomass compared with areas lacking spatial patterns. We tested this prediction by following the sediment elevation during the season on both patterned and unpatterned parts of the mudflat. The results of our study confirmed our model prediction, as more sediment was found to accumulate in patterned parts of the mudflat, revealing how self-organization affected the functioning of mudflat ecosystems. Our study on intertidal mudflats provides a simple but clear-cut example of how the interaction between biological and geomorphological processes, through the process of self-organization, induces a self-organized geomorphic landscape.

Spectral roughness of glaciated bedrock geomorphic surfaces: Implications for glacier sliding

NASA Astrophysics Data System (ADS)

Hubbard, Bryn; Siegert, Martin J.; McCarroll, Danny

2000-09-01

A microroughness meter (MRM) was used to measure the high-frequency roughness of a number of geomorphic surfaces in the forefield of Glacier de Tsanfleuron, Switzerland. Resulting spectral power densities are added to low-frequency spectra, measured by electro-optical distance meter (EDM), to generate composite roughness spectra that include almost 5 orders of magnitude of roughness in the frequency domain. These are used to define two roughness indices: a general index of bed roughness is defined as the integral of the raw, spectral power densities, and a sliding-related index of bed roughness is defined as the integral of the spectral power densities weighted to account for the optimum dependence of glacier sliding speed on hummock wavelength. Results indicate that MRM-measured geomorphic components vary in roughness by 3 orders of magnitude, principally depending on the surface microenvironment measured and profile orientation relative to the direction of former ice flow. Both MRM- and EDM-measured roughnesses are lower parallel to the direction of former ice flow than perpendicular to it. Composite roughness spectra consequently indicate that the glacier bed is smoothed in the direction of former ice flow at all horizontal scales from 1 mm to 40 m, typically resulting in an order of magnitude decrease in sliding-related roughness relative to that measured perpendicular to ice flow. Comparison of data from two survey sites located adjacent to, and ˜1.2 km from, the current glacier margin indicates that postglacial subaerial weathering homogenizes bedrock roughness, in particular reducing high-frequency, flow-orthogonal roughness. Accounting for the effect of 28% ice-bedrock separation over one of the profiles reduces net, sliding-dependent roughness by between 27% and 43%, depending on the transition wave number used.

Quantitative analyses and modelling to support achievement of the 2020 goals for nine neglected tropical diseases.

PubMed

Hollingsworth, T Déirdre; Adams, Emily R; Anderson, Roy M; Atkins, Katherine; Bartsch, Sarah; Basáñez, María-Gloria; Behrend, Matthew; Blok, David J; Chapman, Lloyd A C; Coffeng, Luc; Courtenay, Orin; Crump, Ron E; de Vlas, Sake J; Dobson, Andy; Dyson, Louise; Farkas, Hajnal; Galvani, Alison P; Gambhir, Manoj; Gurarie, David; Irvine, Michael A; Jervis, Sarah; Keeling, Matt J; Kelly-Hope, Louise; King, Charles; Lee, Bruce Y; Le Rutte, Epke A; Lietman, Thomas M; Ndeffo-Mbah, Martial; Medley, Graham F; Michael, Edwin; Pandey, Abhishek; Peterson, Jennifer K; Pinsent, Amy; Porco, Travis C; Richardus, Jan Hendrik; Reimer, Lisa; Rock, Kat S; Singh, Brajendra K; Stolk, Wilma; Swaminathan, Subramanian; Torr, Steve J; Townsend, Jeffrey; Truscott, James; Walker, Martin; Zoueva, Alexandra

2015-12-09

Quantitative analysis and mathematical models are useful tools in informing strategies to control or eliminate disease. Currently, there is an urgent need to develop these tools to inform policy to achieve the 2020 goals for neglected tropical diseases (NTDs). In this paper we give an overview of a collection of novel model-based analyses which aim to address key questions on the dynamics of transmission and control of nine NTDs: Chagas disease, visceral leishmaniasis, human African trypanosomiasis, leprosy, soil-transmitted helminths, schistosomiasis, lymphatic filariasis, onchocerciasis and trachoma. Several common themes resonate throughout these analyses, including: the importance of epidemiological setting on the success of interventions; targeting groups who are at highest risk of infection or re-infection; and reaching populations who are not accessing interventions and may act as a reservoir for infection,. The results also highlight the challenge of maintaining elimination 'as a public health problem' when true elimination is not reached. The models elucidate the factors that may be contributing most to persistence of disease and discuss the requirements for eventually achieving true elimination, if that is possible. Overall this collection presents new analyses to inform current control initiatives. These papers form a base from which further development of the models and more rigorous validation against a variety of datasets can help to give more detailed advice. At the moment, the models' predictions are being considered as the world prepares for a final push towards control or elimination of neglected tropical diseases by 2020.

Comparison of multipoint linkage analyses for quantitative traits in the CEPH data: parametric LOD scores, variance components LOD scores, and Bayes factors

PubMed Central

Sung, Yun Ju; Di, Yanming; Fu, Audrey Q; Rothstein, Joseph H; Sieh, Weiva; Tong, Liping; Thompson, Elizabeth A; Wijsman, Ellen M

2007-01-01

We performed multipoint linkage analyses with multiple programs and models for several gene expression traits in the Centre d'Etude du Polymorphisme Humain families. All analyses provided consistent results for both peak location and shape. Variance-components (VC) analysis gave wider peaks and Bayes factors gave fewer peaks. Among programs from the MORGAN package, lm_multiple performed better than lm_markers, resulting in less Markov-chain Monte Carlo (MCMC) variability between runs, and the program lm_twoqtl provided higher LOD scores by also including either a polygenic component or an additional quantitative trait locus. PMID:18466597

Geomorphic change in Dingzi Bay, East China since the 1950s: impacts of human activity and fluvial input

NASA Astrophysics Data System (ADS)

Tian, Qing; Wang, Qing; Liu, Yalong

2017-06-01

This study examines the geomorphic evolution of Dingzi Bay, East China in response to human activity and variations in fluvial input since the 1950s. The analysis is based on data from multiple mathematical methods, along with information obtained from Remote Sensing, Geographic Information System and Global Position System technology. The results show that the annual runoff and sediment load discharged into Dingzi Bay display significant decreasing trends overall, and marked downward steps were observed in 1966 and 1980. Around 60%-80% of the decline is attributed to decreasing precipitation in the Wulong River Basin. The landform types in Dingzi Bay have changed significantly since the 1950s, especially over the period between 1981 and 1995. Large areas of tidal flats, swamp, salt fields, and paddy fields have been reclaimed, and aquaculture ponds have been constructed. Consequently, the patterns of erosion and deposition in the bay have changed substantially. Despite a reduction in sediment input of 65.68% after 1966, low rates of sediment deposition continued in the bay. However, deposition rates changed significantly after 1981 owing to large-scale development in the bay, with a net depositional area approximately 10 times larger than that during 1961-1981. This geomorphic evolution stabilized following the termination of large-scale human activity in the bay after 1995. Overall, Dingzi Bay has shown a tendency towards silting-up during 1952-2010, with the bay head migrating seaward, the number of channels in the tidal creek system decreasing, and the tidal inlet becoming narrower and shorter. In conclusion, largescale development and human activity in Dingzi Bay have controlled the geomorphic evolution of the bay since the 1950s.

CO2 and CH4 Fluxes across Polygon Geomorphic Types, Barrow, Alaska, 2006-2010

DOE Data Explorer

Tweedie,Craig; Lara, Mark

2014-09-17

Carbon flux data are reported as Net Ecosystem Exchange (NEE), Gross Ecosystem Exchange (GEE), Ecosystem Respiration (ER), and Methane (CH4) flux. Measurements were made at 82 plots across various polygon geomorphic classes at research sites on the Barrow Environmental Observatory (BEO), the Biocomplexity Experiment site on the BEO, and the International Biological Program (IBP) site a little west of the BEO. This product is a compilation of data from 27 plots as presented in Lara et al. (2012), data from six plots presented in Olivas et al. (2010); and from 49 plots described in (Lara et al. 2014). Measurements were made during the peak of the growing seasons during 2006 to 2010. At each of the measurement plots (except Olivas et al., 2010) four different thicknesses of shade cloth were used to generate CO2 light response curves. Light response curves were used to normalize photosynthetically active radiation that is diurnally variable to a peak growing season average ~400 umolm-2sec-1. At the Olivas et al. (2010) plots, diurnal patterns were characterized by repeated sampling. CO2 measurements were made using a closed-chamber photosynthesis system and CH4 measurements were made using a photo-acoustic multi-gas analyzer. In addition, plot-level measurements for thaw depth (TD), water table depth (WTD), leaf area index (LAI), and normalized difference vegetation index (NDVI) are summarized by geomorphic polygon type.

Associations of stream geomorphic conditions and prevalence of alternative reproductive tactics among sockeye salmon populations.

PubMed

DeFilippo, L B; Schindler, D E; Carter, J L; Walsworth, T E; Cline, T J; Larson, W A; Buehrens, T

2018-02-01

In many species, males may exhibit alternative life histories to circumvent the costs of intrasexual competition and female courtship. While the evolution and underlying genetic and physiological mechanisms behind alternative reproductive tactics are well studied, there has been less consideration of the ecological factors that regulate their prevalence. Here, we examine six decades of age composition records from thirty-six populations of sockeye salmon (Oncorhynchus nerka) to quantify associations between spawning habitat characteristics and the prevalence of precocious sneakers known as 'jacks'. Jack prevalence was independent of neutral genetic structure among stream populations, but varied among habitat types and as a function of continuous geomorphic characteristics. Jacks were more common in streams relative to beaches and rivers, and their prevalence was negatively associated with stream width, depth, elevation, slope and area, but positively related to bank cover. Behavioural observations showed that jacks made greater use of banks, wood and shallows than guard males, indicating that their reproductive success depends on the availability of such refuges. Our results emphasize the role of the physical habitat in shaping reproductive tactic frequencies among populations, likely through local adaptation in response to variable fitness expectations under different geomorphic conditions. © 2017 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2017 European Society For Evolutionary Biology.

GEOMORPHIC CONTROLS ON MEADOW ECOSYSTEMS – INSIGHTS INTO LOCAL PROCESSES USING NEAR-SURFACE SEISMIC TECHNIQUES AND GROUND PENETRATING RADAR

EPA Science Inventory

Geomorphic controls on riparian meadows in the Central Great Basin of Nevada are an important aspect in determining the formation of and planning the management of these systems. The current hypothesis is that both alluvial fan sediment and faulted bedrock steps interact to cont...

Geomorphic effects, flood power, and channel competence of a catastrophic flood in confined and unconfined reaches of the upper Lockyer valley, southeast Queensland, Australia

NASA Astrophysics Data System (ADS)

Thompson, Chris; Croke, Jacky

2013-09-01

Flooding is a persistent natural hazard, and even modest changes in future climate are believed to lead to large increases in flood magnitude. Previous studies of extreme floods have reported a range of geomorphic responses from negligible change to catastrophic channel change. This paper provides an assessment of the geomorphic effects of a rare, high magnitude event that occurred in the Lockyer valley, southeast Queensland in January 2011. The average return interval of the resulting flood was ~ 2000 years in the upper catchment and decreased to ~ 30 years downstream. A multitemporal LiDAR-derived DEM of Difference (DoD) is used to quantify morphological change in two study reaches with contrasting valley settings (confined and unconfined). Differences in geomorphic response between reaches are examined in the context of changes in flood power, channel competence and degree of valley confinement using a combination of one-dimensional (1-D) and two-dimensional (2-D) hydraulic modelling. Flood power peaked at 9800 W m- 2 along the confined reach and was 2-3 times lower along the unconfined reach. Results from the DoD confirm that the confined reach was net erosional, exporting ~ 287,000 m3 of sediment whilst the unconfined reach was net depositional gaining ~ 209,000 m3 of sediment, 70% of the amount exported from the upstream, confined reach. The major sources of eroded sediment in the confined reach were within channel benches and macrochannel banks resulting in a significant increase of channel width. In the unconfined reach, the benches and floodplains were the major loci for deposition, whilst the inner channel exhibited minor width increases. The presence of high stream power values, and resultant high erosion rates, within the confined reach is a function of the higher energy gradient of the steeper channel that is associated with knickpoint development. Dramatic differences in geomorphic responses were observed between the two adjacent reaches of

Assessment Approach for Identifying Compatibility of Restoration Projects with Geomorphic and Flooding Processes in Gravel Bed Rivers

NASA Astrophysics Data System (ADS)

DeVries, Paul; Aldrich, Robert

2015-08-01

A critical requirement for a successful river restoration project in a dynamic gravel bed river is that it be compatible with natural hydraulic and sediment transport processes operating at the reach scale. The potential for failure is greater at locations where the influence of natural processes is inconsistent with intended project function and performance. We present an approach using practical GIS, hydrologic, hydraulic, and sediment transport analyses to identify locations where specific restoration project types have the greatest likelihood of working as intended because their function and design are matched with flooding and morphologic processes. The key premise is to identify whether a specific river analysis segment (length ~1-10 bankfull widths) within a longer reach is geomorphically active or inactive in the context of vertical and lateral stabilities, and hydrologically active for floodplain connectivity. Analyses involve empirical channel geometry relations, aerial photographic time series, LiDAR data, HEC-RAS hydraulic modeling, and a time-integrated sediment transport budget to evaluate trapping efficiency within each segment. The analysis segments are defined by HEC-RAS model cross sections. The results have been used effectively to identify feasible projects in a variety of alluvial gravel bed river reaches with lengths between 11 and 80 km and 2-year flood magnitudes between ~350 and 1330 m3/s. Projects constructed based on the results have all performed as planned. In addition, the results provide key criteria for formulating erosion and flood management plans.

Assessment Approach for Identifying Compatibility of Restoration Projects with Geomorphic and Flooding Processes in Gravel Bed Rivers.

PubMed

DeVries, Paul; Aldrich, Robert

2015-08-01

A critical requirement for a successful river restoration project in a dynamic gravel bed river is that it be compatible with natural hydraulic and sediment transport processes operating at the reach scale. The potential for failure is greater at locations where the influence of natural processes is inconsistent with intended project function and performance. We present an approach using practical GIS, hydrologic, hydraulic, and sediment transport analyses to identify locations where specific restoration project types have the greatest likelihood of working as intended because their function and design are matched with flooding and morphologic processes. The key premise is to identify whether a specific river analysis segment (length ~1-10 bankfull widths) within a longer reach is geomorphically active or inactive in the context of vertical and lateral stabilities, and hydrologically active for floodplain connectivity. Analyses involve empirical channel geometry relations, aerial photographic time series, LiDAR data, HEC-RAS hydraulic modeling, and a time-integrated sediment transport budget to evaluate trapping efficiency within each segment. The analysis segments are defined by HEC-RAS model cross sections. The results have been used effectively to identify feasible projects in a variety of alluvial gravel bed river reaches with lengths between 11 and 80 km and 2-year flood magnitudes between ~350 and 1330 m(3)/s. Projects constructed based on the results have all performed as planned. In addition, the results provide key criteria for formulating erosion and flood management plans.

Geomorphic control of landscape carbon accumulation

USGS Publications Warehouse

Rosenbloom, N.A.; Harden, J.W.; Neff, J.C.; Schimel, D.S.

2006-01-01

We use the CREEP process-response model to simulate soil organic carbon accumulation in an undisturbed prairie site in Iowa. Our primary objectives are to identify spatial patterns of carbon accumulation, and explore the effect of erosion on basin-scale C accumulation. Our results point to two general findings. First, redistribution of soil carbon by erosion results in a net increase in basin-wide carbon storage relative to a noneroding environment. Landscape-average mean residence times are increased in an eroding landscape owing to the burial/preservation of otherwise labile C. Second, field observations taken along a slope transect may overlook significant intraslope variations in carbon accumulation. Spatial patterns of modeled deep C accumulation are complex. While surface carbon with its relatively short equilibration time is predictable from surface properties, deep carbon is strongly influenced by the landscape's geomorphic and climatic history, resulting in wide spatial variability. Convergence and divergence associated with upland swales and interfluves result in bimodal carbon distributions in upper and mid slopes; variability in carbon storage within modeled mid slopes was as high as simulated differences between erosional shoulders and depositional valley bottoms. The bimodality of mid-slope C variability in the model suggests that a three-dimensional sampling strategy is preferable over the traditional two-dimensional analog or "catena" approach. Copyright 2006 by the American Geophysical Union.

A geomorphic process law for detachment-limited hillslopes

NASA Astrophysics Data System (ADS)

Turowski, Jens

2015-04-01

Geomorphic process laws are used to assess the shape evolution of structures at the Earth's surface over geological time scales, and are routinely used in landscape evolution models. There are two currently available concepts on which process laws for hillslope evolution rely. In the transport-limited concept, the evolution of a hillslope is described by a linear or a non-linear diffusion equation. In contrast, in the threshold slope concept, the hillslope is assumed to collapse to a slope equal to the internal friction angle of the material when the load due to the relief exists the material strength. Many mountains feature bedrock slopes, especially in the high mountains, and material transport along the slope is limited by the erosion of the material from the bedrock. Here, I suggest a process law for detachment-limited or threshold-dominated hillslopes, in which the erosion rate is a function of the applied stress minus the surface stress due to structural loading. The process law leads to the prediction of an equilibrium form that compares well to the shape of many mountain domes.

Quantitative Residual Strain Analyses on Strain Hardened Nickel Based Alloy

NASA Astrophysics Data System (ADS)

Yonezawa, Toshio; Maeguchi, Takaharu; Goto, Toru; Juan, Hou

Many papers have reported about the effects of strain hardening by cold rolling, grinding, welding, etc. on stress corrosion cracking susceptibility of nickel based alloys and austenitic stainless steels for LWR pipings and components. But, the residual strain value due to cold rolling, grinding, welding, etc. is not so quantitatively evaluated.

The influence of the design matrix on treatment effect estimates in the quantitative analyses of single-subject experimental design research.

PubMed

Moeyaert, Mariola; Ugille, Maaike; Ferron, John M; Beretvas, S Natasha; Van den Noortgate, Wim

2014-09-01

The quantitative methods for analyzing single-subject experimental data have expanded during the last decade, including the use of regression models to statistically analyze the data, but still a lot of questions remain. One question is how to specify predictors in a regression model to account for the specifics of the design and estimate the effect size of interest. These quantitative effect sizes are used in retrospective analyses and allow synthesis of single-subject experimental study results which is informative for evidence-based decision making, research and theory building, and policy discussions. We discuss different design matrices that can be used for the most common single-subject experimental designs (SSEDs), namely, the multiple-baseline designs, reversal designs, and alternating treatment designs, and provide empirical illustrations. The purpose of this article is to guide single-subject experimental data analysts interested in analyzing and meta-analyzing SSED data. © The Author(s) 2014.

Riparian vegetation patterns in relation to fluvial landforms and channel evolution along selected rivers of Tuscany (Central Italy)

USGS Publications Warehouse

Hupp, C.R.; Rinaldi, M.

2007-01-01

Riparian vegetation distribution patterns and diversity relative to various fluvial geomorphic channel patterns, landforms, and processes are described and interpreted for selected rivers of Tuscany, Central Italy; with emphasis on channel evolution following human impacts. Field surveys were conducted along thirteen gauged reaches for species presence, fluvial landforms, and the type and amount of channel/riparian zone change. Inundation frequency of different geomorphic surfaces was determined, and vegetation data were analyzed using BDA (binary discriminate analysis) and DCA (detrended correspondence analysis) and related to hydrogeomorphology. Multivariate analyses revealed distinct quantitative vegetation patterns relative to six major fluvial geomorphic surfaces. DCA of the vegetation data also showed distinct associations of plants to processes of adjustment that are related to stage of channel evolution, and clearly separated plants along disturbance/landform/soil moisture gradients. Species richness increases from the channel bed to the terrace and on heterogeneous riparian areas, whereas species richness decreases from moderate to intense incision and from low to intense narrowing. ?? 2007 by Association of American Geographers.

Analysis and classification of topographic flow steering and inferred geomorphic processes as a function of discharge in a mountain river

NASA Astrophysics Data System (ADS)

Gore, J.; Pasternack, G. B.; Wiener, J.

2016-12-01

Process-based river classification tends to be done at reach to catchment scales assuming channels are uniform and thus differentiated by the simple specific stream power metric. In fact, mountain rivers are highly variable at subreach scales to the point that local topographic steering may be the dominant control on geomorphic processes. This study presents a new framework for characterizing how stage-dependent topographic steering varies continuously down a river, leading to a classification of subreach landforms on the basis of the geomorphic mechanism of flow convergence routing. The two remote mountain river segments were located in the 3480-km2 Yuba River, with the upper South Yuba having a substantial sediment supply from legacy hydraulic gold mining and the mainstem Yuba downstream of New Bullards Bar Dam having a restricted sediment supply. Meter-scale DEMs were produced for both cases using airborne LiDAR and survey data. DEMs were slope detrended to focus the analysis on cross-sectional variability. DEMs were then heavily smoothed to allow for automated tracing of the valley centerline, and then cross-sectional rectangles were spaced every 5 m. The average width (W) and detrended bed elevation (Z) of the wetted area was computed from the DEM for each raster for 6-7 different river stages. Both width and cross-sectionally averaged bed elevation were standardized. The product of these two variables was computed as a measure of cross-sectional area, and is termed the geomorphic covariance (Czw) series when plotted along each river corridor. Cwz was then used to classify each cross-section as one of five distinct landform types: nozzle, wide bar, normal channel, constricted pool, and oversized pool- with this classification varying with discharge such that a section could, for example, function as a nozzle during low flow but an oversized pool at high flow, or any other combination. Longitudinal profiles of bed elevation, width, covariance, and landform type

Analyzing Hydro-Geomorphic Responses in Post-Fire Stream Channels with Terrestrial LiDAR

NASA Astrophysics Data System (ADS)

Nourbakhshbeidokhti, S.; Kinoshita, A. M.; Chin, A.

2015-12-01

Wildfires have potential to significantly alter soil properties and vegetation within watersheds. These alterations often contribute to accelerated erosion, runoff, and sediment transport in stream channels and hillslopes. This research applies repeated Terrestrial Laser Scanning (TLS) Light Detection and Ranging (LiDAR) to stream reaches within the Pike National Forest in Colorado following the 2012 Waldo Canyon Fire. These scans allow investigation of the relationship between sediment delivery and environmental characteristics such as precipitation, soil burn severity, and vegetation. Post-fire LiDAR images provide high resolution information of stream channel changes in eight reaches for three years (2012-2014). All images are processed with RiSCAN PRO to remove vegetation and triangulated and smoothed to create a Digital Elevation Model (DEM) with 0.1 m resolution. Study reaches with two or more successive DEM images are compared using a differencing method to estimate the volume of sediment erosion and deposition. Preliminary analysis of four channel reaches within Williams Canyon and Camp Creek yielded erosion estimates between 0.035 and 0.618 m3 per unit area. Deposition was estimated as 0.365 to 1.67 m3 per unit area. Reaches that experienced higher soil burn severity or larger rainfall events produced the greatest geomorphic changes. Results from LiDAR analyses can be incorporated into post-fire hydrologic models to improve estimates of runoff and sediment yield. These models will, in turn, provide guidance for water resources management and downstream hazards mitigation.

Late Holocene geomorphic record of fire in ponderosa pine and mixed-conifer forests, Kendrick Mountain, northern Arizona, USA

Treesearch

Sara E. Jenkins; Carolyn Hull Sieg; Diana E. Anderson; Darrell S. Kaufman; Philip A. Pearthree

2011-01-01

Long-term fire history reconstructions enhance our understanding of fire behaviour and associated geomorphic hazards in forested ecosystems. We used 14C ages on charcoal from fire-induced debris-flow deposits to date prehistoric fires on Kendrick Mountain, northern Arizona, USA. Fire-related debris-flow sedimentation dominates Holocene fan deposition in the study area...

The Barrancas anticline in west-central Argentina: new geomorphic and geologic constraints on the geometry and activity of a fault-related fold

NASA Astrophysics Data System (ADS)

Rimando, J. M.; Schoenbohm, L. M.

2016-12-01

The Barrancas anticline in Mendoza Province, west-central Argentina is a N-NW-oriented, east-vergent fault-bend fold located in the transition from the mainly east-vergent, thin-skinned Argentine Precordillera to the mainly west-vergent, thick-skinned Sierras Pampeanas — one of the most active thrust zones on Earth. Previous studies of the Barrancas anticline interpreted its structure from 2-D and 3-D seismic data. The anticline is a fault-bend fold with multiple segments with different uplift histories and which linked only after 2.3Ma. This study aims to establish the temporal persistence of segmentation and to describe the role, extent and rates of deformation processes involved in the development of the Barrancas anticline from morphometric analyses, geologic and geomorphic mapping, and accurate dating of relevant geomorphic features. Longitudinal profile analysis of streams on the anticline reveals marked differences in normalized steepness index (ksn) between the western and eastern limbs as well as variation along strike. This distribution of ksn values reveals patterns consistent with asymmetry and segmentation of the Barrancas anticline. Swath profiles parallel to the fold axis resemble fault slip distribution profiles which was a basis for segmentation from previous studies. Drainage basin morphometric indices such as hypsometry, drainage density, and basin elongation were also measured. Hypsometric integral values were particularly higher on the west than on the east, possibly indicating younger folding on the western limb. This study will contribute to a better understanding of the nature, extent, timing, and rate of folding at the transition from thin- to thick-skinned thrust deformation in west-central Argentina. Additionally, this study will contribute to assessment of seismic hazards associated with fault-related folds in Argentina and in similar tectonic settings worldwide.

Quantitative research.

PubMed

Watson, Roger

2015-04-01

This article describes the basic tenets of quantitative research. The concepts of dependent and independent variables are addressed and the concept of measurement and its associated issues, such as error, reliability and validity, are explored. Experiments and surveys – the principal research designs in quantitative research – are described and key features explained. The importance of the double-blind randomised controlled trial is emphasised, alongside the importance of longitudinal surveys, as opposed to cross-sectional surveys. Essential features of data storage are covered, with an emphasis on safe, anonymous storage. Finally, the article explores the analysis of quantitative data, considering what may be analysed and the main uses of statistics in analysis.

Predicting geomorphic evolution through integration of numerical-model scenarios and topographic/bathymetric-survey updates

NASA Astrophysics Data System (ADS)

Plant, N. G.; Long, J.; Dalyander, S.; Thompson, D.; Miselis, J. L.

2013-12-01

Natural resource and hazard management of barrier islands requires an understanding of geomorphic changes associated with long-term processes and storms. Uncertainty exists in understanding how long-term processes interact with the geomorphic changes caused by storms and the resulting perturbations of the long-term evolution trajectories. We use high-resolution data sets to initialize and correct high-fidelity numerical simulations of oceanographic forcing and resulting barrier island evolution. We simulate two years of observed storms to determine the individual and cumulative impacts of these events. Results are separated into cross-shore and alongshore components of sediment transport and compared with observed topographic and bathymetric changes during these time periods. The discrete island change induced by these storms is integrated with previous knowledge of long-term net alongshore sediment transport to project island evolution. The approach has been developed and tested using data collected at the Chandeleur Island chain off the coast of Louisiana (USA). The simulation time period included impacts from tropical and winter storms, as well as a human-induced perturbation associated with construction of a sand berm along the island shoreline. The predictions and observations indicated that storm and long-term processes both contribute to the migration, lowering, and disintegration of the artificial berm and natural island. Further analysis will determine the relative importance of cross-shore and alongshore sediment transport processes and the dominant time scales that drive each of these processes and subsequent island morphologic response.

Geomorphic determinants of species composition of alpine tundra, Glacier National Park, U.S.A.

USGS Publications Warehouse

George P. Malanson,; Bengtson, Lindsey E.; Fagre, Daniel B.

2012-01-01

Because the distribution of alpine tundra is associated with spatially limited cold climates, global warming may threaten its local extent or existence. This notion has been challenged, however, based on observations of the diversity of alpine tundra in small areas primarily due to topographic variation. The importance of diversity in temperature or moisture conditions caused by topographic variation is an open question, and we extend this to geomorphology more generally. The extent to which geomorphic variation per se, based on relatively easily assessed indicators, can account for the variation in alpine tundra community composition is analyzed versus the inclusion of broad indicators of regional climate variation. Visual assessments of topography are quantified and reduced using principal components analysis (PCA). Observations of species cover are reduced using detrended correspondence analysis (DCA). A “best subsets” regression approach using the Akaike Information Criterion for selection of variables is compared to a simple stepwise regression with DCA scores as the dependent variable and scores on significant PCA axes plus more direct measures of topography as independent variables. Models with geographic coordinates (representing regional climate gradients) excluded explain almost as much variation in community composition as models with them included, although they are important contributors to the latter. The geomorphic variables in the model are those associated with local moisture differences such as snowbeds. The potential local variability of alpine tundra can be a buffer against climate change, but change in precipitation may be as important as change in temperature.

Multiplexed and Microparticle-based Analyses: Quantitative Tools for the Large-Scale Analysis of Biological Systems

PubMed Central

Nolan, John P.; Mandy, Francis

2008-01-01

While the term flow cytometry refers to the measurement of cells, the approach of making sensitive multiparameter optical measurements in a flowing sample stream is a very general analytical approach. The past few years have seen an explosion in the application of flow cytometry technology for molecular analysis and measurements using micro-particles as solid supports. While microsphere-based molecular analyses using flow cytometry date back three decades, the need for highly parallel quantitative molecular measurements that has arisen from various genomic and proteomic advances has driven the development in particle encoding technology to enable highly multiplexed assays. Multiplexed particle-based immunoassays are now common place, and new assays to study genes, protein function, and molecular assembly. Numerous efforts are underway to extend the multiplexing capabilities of microparticle-based assays through new approaches to particle encoding and analyte reporting. The impact of these developments will be seen in the basic research and clinical laboratories, as well as in drug development. PMID:16604537

Tree ring-based chronology of hydro-geomorphic processes as a fundament for identification of hydro-meteorological triggers in the Hrubý Jeseník Mountains (Central Europe).

PubMed

Tichavský, Radek; Šilhán, Karel; Tolasz, Radim

2017-02-01

Hydro-geomorphic processes have significantly influenced the recent development of valley floors, river banks and depositional forms in mountain environments, have caused considerable damage to manmade developments and have disrupted forest management. Trees growing along streams are affected by the transported debris mass and provide valuable records of debris flow/flood histories in their tree-ring series. Dendrogeomorphic approaches are currently the most accurate methods for creating a chronology of the debris flow/flood events in forested catchments without any field-monitoring or a stream-gauging station. Comprehensive studies focusing on the detailed chronology of hydro-geomorphic events and analysis of meteorological triggers and weather circulation patterns are still lacking for the studied area. We provide a spatio-temporal reconstruction of hydro-geomorphic events in four catchments of the Hrubý Jeseník Mountains, Czech Republic, with an analysis of their triggering factors using meteorological data from four nearby rain gauges. Increment cores from 794 coniferous trees (Picea abies [L.] Karst.) allowed the identification of 40 hydro-geomorphic events during the period of 1889-2013. Most of the events can be explained by extreme daily rainfalls (≥50mm) occurring in at least one rain gauge. However, in several cases, there was no record of extreme precipitation at rain gauges during the debris flow/flood event year, suggesting extremely localised rainstorms at the mountain summits. We concluded that the localisation, intensity and duration of rainstorms; antecedent moisture conditions; and amount of available sediments all influenced the initiation, spatial distribution and characteristics of hydro-geomorphic events. The most frequent synoptic situations responsible for the extreme rainfalls (1946-2015) were related to the meridional atmospheric circulation pattern. Our results enhance current knowledge of the occurrences and triggers of debris flows

Multiphase Method for Analysing Online Discussions

ERIC Educational Resources Information Center

Häkkinen, P.

2013-01-01

Several studies have analysed and assessed online performance and discourse using quantitative and qualitative methods. Quantitative measures have typically included the analysis of participation rates and learning outcomes in terms of grades. Qualitative measures of postings, discussions and context features aim to give insights into the nature…

Living Shorelines: Assessing Geomorphic Change and Water Quality in an Urban Waterway

NASA Astrophysics Data System (ADS)

Huggins, A.; Schwartz, M. C.; Schmutz, P. P.

2017-12-01

In recent years, alternative strategies for shoreline armoring have become increasingly popular with coastal property owners. In Northwest Florida, local agencies implemented plans to attenuate wave action and reduce landward shore recession in an urban bayou by installing living shorelines. Living shorelines are constructed in the inter-tidal zones and incorporate both hard and soft structured stabilization. Generally, the hard component is fossilized oyster shells and the soft component is planted intertidal vegetation, such as Spartina alterniflora (Smooth cordgrass) and Juncus roemererianus (Black needlerush). Living shorelines were intended to comprise both ecological and societal implications by significantly slowing erosion processes for property owners, by utilizing oyster beds to improve water quality, and by fostering new ecological habitats in the marsh grasses. The issue presented with living shoreline management is long-term studies have not been carried out on these engineered systems. For this study, geospatial technology was utilized to create 3D images of terrain by interpolation of data points using a TotalStation to compute geomorphic change. Additionally, water samples were analyzed using traditional wet chemistry laboratory methods to determine total oxidized nitrogen (TON), ammonium, and orthophosphate content in water. Over a short three-month preliminary study, sediment accretion was observed primarily within the vegetation with the bulk of the erosion occurring around the oyster beds. TON was detected at levels between 10 µM and 30 µM, ammonium up to 5 µM, and orthophosphate was only detected in very low levels, consistently < 2 µM. The project is in its infancy, as the topographic profiles and water quality data will be used to establish baseline data for future research to determine volumetric geomorphic change,and to set a standard for water quality trends, surrounding oyster beds and vegetation in response to climatic events.

Geomorphic Framework to assess changes to aquatic habitat due to flow regulation and channel and floodplain alteration, Cedar River, Washington

USGS Publications Warehouse

Gendaszek, Andrew S.; Magirl, Christopher S.; Czuba, Christiana R.; Konrad, Christopher P.; Little, Rand

2010-01-01

Flow regulation, bank armoring, and floodplain alteration since the early 20th century have contributed to significant changes in the hydrologic regime and geomorphic processes of the Cedar River in Washington State. The Cedar River originates in the Cascade Range, provides drinking water to the Seattle metropolitan area, and supports several populations of anadromous salmonids. Flow regulation currently has limited influence on the magnitude, duration, and timing of high-flow events, which affect the incubation of salmonids as well as the production and maintenance of their habitat. Unlike structural changes to the channel and floodplain, flow regulation may be modified in the short-term to improve the viability of salmon populations. An understanding of the effects of flow regulation on those populations must be discerned over a range of scales from individual floods that affect the size of individual year classes to decadal high flow regime that influences the amount and quality of channel and off-channel habitat available for spawning and rearing. We present estimates of reach-scale sediment budgets and changes to channel morphology derived from historical orthoimagery, specific gage analyses at four long-term streamflow-gaging stations to quantify trends in aggradation, and hydrologic statistics of the magnitude and duration of peak streamflows. These data suggest a gradient of channel types from unconfined, sediment-rich segments to confined, sediment-poor segments that are likely to have distinct responses to high flows. Particle-size distribution data and longitudinal water surface and streambed profiles for the 56 km downstream of Chester Morse Lake measured in 2010 show the spatial extent of preferred salmonid habitat along the Cedar River. These historical and current data constitute a geomorphic framework to help assess different river management scenarios for salmonid habitat and population viability. PDF version of a presentation on changes to aquatic

Gophers as geomorphic agents in the Colorado Front Range subalpine zone

NASA Astrophysics Data System (ADS)

Winchell, Eric W.; Anderson, Robert S.; Lombardi, Elizabeth M.; Doak, Daniel F.

2016-07-01

Gophers are significant geomorphic agents in many landscapes. We document activity of the northern pocket gopher (Thomomys talpoides) in two small subalpine meadows (1050-1800 m2) of the Front Range, Colorado, USA. We tracked locations and volumes of mounds and subnivean infilled tunnels over one year and probed the thickness of the biomantle within one meadow. We infer that only 5-7 gophers occupied each meadow, implying a gopher density of 28-67 ha- 1. Fractional areal coverage of the meadows by diggings suggests that within 49-95 years gophers would fully resurface the meadows. Annual volumes of excavated soil correspond to the equivalent of 1 mm of material spread evenly over the meadows. Probed meadow resistance depths reveal a pattern we interpret to be stone lines at roughly 15 cm depths; implied vertical turnover times are therefore roughly 150 years. These spatial and temporal patterns imply that gophers should be able to churn the biomantle on approximately century timescales and should fully resurface the meadow areas in similar timescales. These field data also contribute to an investigation of lateral sediment transport; given the local slope of the landscape, gopher-driven sediment transport within our two study sites suggests a landscape diffusivity of 0.008 m2y- 1. At no time do gophers occupy the forest. As evidenced by subnivean infilled tunnels, winter activity is restricted to the upslope (and hence upwind) meadow edges, which correspond to high snow cover and warm (> 0 °C) shallow subsurface soil temperatures. Subsequent activity expands downhill into the meadows and shows a distinct pulse of mound activity in late summer through early fall prior to snowfall. Local forest fire history has led to much more extensive meadows in the past, suggesting that the geomorphic influence of gophers in the landscape is much more widespread than the present distribution of meadows and may cover the entire subalpine region of the Front Range on millennial

Geomorphology and landscape organization of a northern peatland complex

NASA Astrophysics Data System (ADS)

Richardson, M. C.

2012-12-01

The geomorphic evolution of northern peatlands is governed by complex ecohydrological feedback mechanisms and associated hydro-climatic drivers. For example, prevailing models of bog development (i.e. Ingram's groundwater mounding hypothesis and variants) attempt to explicitly link bog dome characteristics to the regional climate based on analytical and numerical models of lateral groundwater flow and the first-order control of water table position on rates of peat accumulation. In this talk I will present new results from quantitative geomorphic analyses of a northern peatland complex at the De Beers Victor diamond mine site in the Hudson Bay Lowlands of northern Ontario. This work capitalizes on spatially-extensive, high-resolution topographic (LiDAR) data to rigorously test analytical and numerical models of bog dome development in this landscape. The analysis and discussion are then expanded beyond individual bog formations to more broadly consider ecohydrological drivers of landscape organization, with implications for understanding and modeling catchment-scale runoff response. Results show that in this landscape, drainage patterns exhibit relatively well-organized characteristics consistent with observed runoff responses in six gauged research catchments. Interpreted together, the results of these geomorphic and hydrologic analyses help refine our understanding of water balance partitioning among different landcover types within northern peatland complexes. These findings can be used to help guide the development of appropriate numerical model structures for hydrologic prediction in ungauged peatland basins of northern Canada.

Sensitivity analyses of exposure estimates from a quantitative job-exposure matrix (SYN-JEM) for use in community-based studies.

PubMed

Peters, Susan; Kromhout, Hans; Portengen, Lützen; Olsson, Ann; Kendzia, Benjamin; Vincent, Raymond; Savary, Barbara; Lavoué, Jérôme; Cavallo, Domenico; Cattaneo, Andrea; Mirabelli, Dario; Plato, Nils; Fevotte, Joelle; Pesch, Beate; Brüning, Thomas; Straif, Kurt; Vermeulen, Roel

2013-01-01

We describe the elaboration and sensitivity analyses of a quantitative job-exposure matrix (SYN-JEM) for respirable crystalline silica (RCS). The aim was to gain insight into the robustness of the SYN-JEM RCS estimates based on critical decisions taken in the elaboration process. SYN-JEM for RCS exposure consists of three axes (job, region, and year) based on estimates derived from a previously developed statistical model. To elaborate SYN-JEM, several decisions were taken: i.e. the application of (i) a single time trend; (ii) region-specific adjustments in RCS exposure; and (iii) a prior job-specific exposure level (by the semi-quantitative DOM-JEM), with an override of 0 mg/m(3) for jobs a priori defined as non-exposed. Furthermore, we assumed that exposure levels reached a ceiling in 1960 and remained constant prior to this date. We applied SYN-JEM to the occupational histories of subjects from a large international pooled community-based case-control study. Cumulative exposure levels derived with SYN-JEM were compared with those from alternative models, described by Pearson correlation ((Rp)) and differences in unit of exposure (mg/m(3)-year). Alternative models concerned changes in application of job- and region-specific estimates and exposure ceiling, and omitting the a priori exposure ranking. Cumulative exposure levels for the study subjects ranged from 0.01 to 60 mg/m(3)-years, with a median of 1.76 mg/m(3)-years. Exposure levels derived from SYN-JEM and alternative models were overall highly correlated (R(p) > 0.90), although somewhat lower when omitting the region estimate ((Rp) = 0.80) or not taking into account the assigned semi-quantitative exposure level (R(p) = 0.65). Modification of the time trend (i.e. exposure ceiling at 1950 or 1970, or assuming a decline before 1960) caused the largest changes in absolute exposure levels (26-33% difference), but without changing the relative ranking ((Rp) = 0.99). Exposure estimates derived from SYN

Effects of detector dead-time on quantitative analyses involving boron and multi-hit detection events in atom probe tomography.

PubMed

Meisenkothen, Frederick; Steel, Eric B; Prosa, Ty J; Henry, Karen T; Prakash Kolli, R

2015-12-01

In atom probe tomography (APT), some elements tend to field evaporate preferentially in multi-hit detection events. Boron (B) is one such element. It is thought that a large fraction of the B signal may be lost during data acquisition and is not reported in the mass spectrum or in the 3-D APT reconstruction. Understanding the relationship between the field evaporation behavior of B and the limitations for detecting multi-hit events can provide insight into the signal loss mechanism for B and may suggest ways to improve B detection accuracy. The present work reports data for nominally pure B and for B-implanted silicon (Si) (NIST-SRM2137) at dose levels two-orders of magnitude lower than previously studied by Da Costa, et al. in 2012. Boron concentration profiles collected from SRM2137 specimens qualitatively confirmed a signal loss mechanism is at work in laser pulsed atom probe measurements of B in Si. Ion correlation analysis was used to graphically demonstrate that the detector dead-time results in few same isotope, same charge-state (SISCS) ion pairs being properly recorded in the multi-hit data, explaining why B is consistently under-represented in quantitative analyses. Given the important role of detector dead-time as a signal loss mechanism, the results from three different methods of estimating the detector dead-time are presented. The findings of this study apply to all quantitative analyses that involve multi-hit data, but the dead-time will have the greatest effect on the elements that have a significant quantity of ions detected in multi-hit events. Published by Elsevier B.V.

A new high-resolution 3-D quantitative method for analysing small morphological features: an example using a Cambrian trilobite.

PubMed

Esteve, Jorge; Zhao, Yuan-Long; Maté-González, Miguel Ángel; Gómez-Heras, Miguel; Peng, Jin

2018-02-12

Taphonomic processes play an important role in the preservation of small morphological features such as granulation or pits. However, the assessment of these features may face the issue of the small size of the specimens and, sometimes, the destructiveness of these analyses, which makes impossible carrying them out in singular specimen, such as holotypes or lectotypes. This paper takes a new approach to analysing small-morphological features, by using an optical surface roughness (OSR) meter to create a high-resolution three-dimensional digital-elevation model (DEM). This non-destructive technique allows analysing quantitatively the DEM using geometric morphometric methods (GMM). We created a number of DEMs from three populations putatively belonging to the same species of trilobite (Oryctocephalus indicus) that present the same cranidial outline, but differ in the presence or absence of the second and third transglabellar furrows. Profile analysis of the DEMs demonstrate that all three populations show similar preservation variation in the glabellar furrows and lobes. The GMM shows that all populations exhibit the same range of variation. Differences in preservation are a consequence of different degrees of cementation and rates of dissolution. Fast cementation enhances the preservation of glabellar furrows and lobes, while fast dissolution hampers preservation of the same structures.

Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data.

PubMed

Li, Peter; Castrillo, Juan I; Velarde, Giles; Wassink, Ingo; Soiland-Reyes, Stian; Owen, Stuart; Withers, David; Oinn, Tom; Pocock, Matthew R; Goble, Carole A; Oliver, Stephen G; Kell, Douglas B

2008-08-07

There has been a dramatic increase in the amount of quantitative data derived from the measurement of changes at different levels of biological complexity during the post-genomic era. However, there are a number of issues associated with the use of computational tools employed for the analysis of such data. For example, computational tools such as R and MATLAB require prior knowledge of their programming languages in order to implement statistical analyses on data. Combining two or more tools in an analysis may also be problematic since data may have to be manually copied and pasted between separate user interfaces for each tool. Furthermore, this transfer of data may require a reconciliation step in order for there to be interoperability between computational tools. Developments in the Taverna workflow system have enabled pipelines to be constructed and enacted for generic and ad hoc analyses of quantitative data. Here, we present an example of such a workflow involving the statistical identification of differentially-expressed genes from microarray data followed by the annotation of their relationships to cellular processes. This workflow makes use of customised maxdBrowse web services, a system that allows Taverna to query and retrieve gene expression data from the maxdLoad2 microarray database. These data are then analysed by R to identify differentially-expressed genes using the Taverna RShell processor which has been developed for invoking this tool when it has been deployed as a service using the RServe library. In addition, the workflow uses Beanshell scripts to reconcile mismatches of data between services as well as to implement a form of user interaction for selecting subsets of microarray data for analysis as part of the workflow execution. A new plugin system in the Taverna software architecture is demonstrated by the use of renderers for displaying PDF files and CSV formatted data within the Taverna workbench. Taverna can be used by data analysis

Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data

PubMed Central

Li, Peter; Castrillo, Juan I; Velarde, Giles; Wassink, Ingo; Soiland-Reyes, Stian; Owen, Stuart; Withers, David; Oinn, Tom; Pocock, Matthew R; Goble, Carole A; Oliver, Stephen G; Kell, Douglas B

2008-01-01

Background There has been a dramatic increase in the amount of quantitative data derived from the measurement of changes at different levels of biological complexity during the post-genomic era. However, there are a number of issues associated with the use of computational tools employed for the analysis of such data. For example, computational tools such as R and MATLAB require prior knowledge of their programming languages in order to implement statistical analyses on data. Combining two or more tools in an analysis may also be problematic since data may have to be manually copied and pasted between separate user interfaces for each tool. Furthermore, this transfer of data may require a reconciliation step in order for there to be interoperability between computational tools. Results Developments in the Taverna workflow system have enabled pipelines to be constructed and enacted for generic and ad hoc analyses of quantitative data. Here, we present an example of such a workflow involving the statistical identification of differentially-expressed genes from microarray data followed by the annotation of their relationships to cellular processes. This workflow makes use of customised maxdBrowse web services, a system that allows Taverna to query and retrieve gene expression data from the maxdLoad2 microarray database. These data are then analysed by R to identify differentially-expressed genes using the Taverna RShell processor which has been developed for invoking this tool when it has been deployed as a service using the RServe library. In addition, the workflow uses Beanshell scripts to reconcile mismatches of data between services as well as to implement a form of user interaction for selecting subsets of microarray data for analysis as part of the workflow execution. A new plugin system in the Taverna software architecture is demonstrated by the use of renderers for displaying PDF files and CSV formatted data within the Taverna workbench. Conclusion Taverna can

Geomorphic evidence of Quaternary tectonics within an underlap fault zone of southern Apennines, Italy

NASA Astrophysics Data System (ADS)

Giano, Salvatore Ivo; Pescatore, Eva; Agosta, Fabrizio; Prosser, Giacomo

2018-02-01

A composite seismic source, the Irpinia - Agri Valley Fault zone, located in the axial sector of the fold-and-thrust belt of southern Apennines, Italy, is investigated. This composite source is made up of a series of nearly parallel, NW-striking normal fault segments which caused many historical earthquakes. Two of these fault segments, known as the San Gregorio Magno and Pergola-Melandro, and the fault-related mountain fronts, form a wedge-shaped, right-stepping, underlap fault zone. This work is aimed at documenting tectonic geomorphology and geology of this underlap fault zone. The goal is to decipher the evidence of surface topographic interaction between two bounding fault segments and their related mountain fronts. In particular, computation of geomorphic indices such as mountain front sinuosity (Smf), water divide sinuosity (Swd), asymmetry factor (AF), drainage basin elongation (Bs), relief ratio (Rh), Hypsometry (HI), normalized steepness (Ksn), and concavity (θ) is integrated with geomorphological analysis, the geological mapping, and structural analysis in order to assess the recent activity of the fault scarp sets recognized within the underlap zone. Results are consistent with the NW-striking faults as those showing the most recent tectonic activity, as also suggested by presence of related slope deposits younger than 38 ka. The results of this work therefore show how the integration of a multidisciplinary approach that combines geomorphology, morphometry, and structural analyses may be key to solving tectonic geomorphology issues in a complex, fold-and-thrust belt configuration.

Quantitative and qualitative analyses of subacromial impingement by kinematic open MRI.

PubMed

Tasaki, Atsushi; Nimura, Akimoto; Nozaki, Taiki; Yamakawa, Akira; Niitsu, Mamoru; Morita, Wataru; Hoshikawa, Yoshimitsu; Akita, Keiichi

2015-05-01

Quantitative and qualitative kinematic analyses of subacromial impingement by 1.2T open MRI were performed to determine the location of impingement and the involvement of the acromioclavicular joint. In 20 healthy shoulders, 10 sequential images in the scapular plane were taken in a 10-s pause at equal intervals from 30° to maximum abduction in neutral and internal rotation. The distances between the rotator cuff (RC) and the acromion and the acromioclavicular joint were measured. To comprehend the positional relationships, cadaveric specimens were also observed. Although asymptomatic, the RC came into contact with the acromion and the acromioclavicular joint in six and five cases, respectively. The superior RC acted as a depressor for the humeral head against the acromion as the shoulder elevated. The mean elevation angle and distance at the closest position between the RC and the acromion in neutral rotation were 93.5° and 1.6 mm, respectively, while those between the RC and the acromioclavicular joint were 86.7° and 2.0 mm. When comparing this distance and angle, there was no significant difference between the RC to the acromion and to the acromioclavicular joint. The minimum distance between the RC and the acromion was significantly shorter than that between the greater tuberosity and the acromion. The location of RC closest to the acromion and the acromioclavicular joint differed significantly. Although asymptomatic, contact was found between the RC and the acromion and the acromioclavicular joint. The important role of the RC to prevent impingement was observed, and hence, dysfunction of the RC could lead to impingement that could result in a RC lesion. The RC lesions may differ when they are caused by impingement from either the acromion or the acromioclavicular joint.

Post-fire geomorphic response in steep, forested landscapes: Oregon Coast Range, USA

NASA Astrophysics Data System (ADS)

Jackson, Molly; Roering, Joshua J.

2009-06-01

The role of fire in shaping steep, forested landscapes depends on a suite of hydrologic, biologic, and geological characteristics, including the propensity for hydrophobic soil layers to promote runoff erosion during subsequent rainfall events. In the Oregon Coast Range, several studies postulate that fire primarily modulates sediment production via root reinforcement and shallow landslide susceptibility, although few studies have documented post-fire geomorphic response. Here, we describe field observations and topographic analyses for three sites in the central Oregon Coast Range that burned in 1999, 2002, and 2003. The fires generated strongly hydrophobic soil layers that did not promote runoff erosion because the continuity of the layers was interrupted by pervasive discontinuities that facilitated rapid infiltration. At each of our sites, fire generated significant colluvial transport via dry ravel, consistent with other field-based studies in the western United States. Fire-driven dry ravel accumulation in low-order valleys of our Sulphur Creek site equated to a slope-averaged landscape lowering of 2.5 mm. Given Holocene estimates of fire frequency, these results suggest that fire may contribute 10-20% of total denudation across steep, dissected portions of the Oregon Coast Range. In addition, we documented more rapid decline of root strength at our sites than has been observed after timber harvest, suggesting that root strength was compromised prior to fire or that intense heat damaged roots in the shallow subsurface. Given that fire frequencies in the Pacific Northwest are predicted to increase with continued climate change, our findings highlight the importance of fire-induced dry ravel and post-fire debris flow activity in controlling sediment delivery to channels.

Quantitative characterization of colloidal assembly of graphene oxide-silver nanoparticle hybrids using aerosol differential mobility-coupled mass analyses.

PubMed

Nguyen, Thai Phuong; Chang, Wei-Chang; Lai, Yen-Chih; Hsiao, Ta-Chih; Tsai, De-Hao

2017-10-01

In this work, we develop an aerosol-based, time-resolved ion mobility-coupled mass characterization method to investigate colloidal assembly of graphene oxide (GO)-silver nanoparticle (AgNP) hybrid nanostructure on a quantitative basis. Transmission electron microscopy (TEM) and zeta potential (ZP) analysis were used to provide visual information and elemental-based particle size distributions, respectively. Results clearly show a successful controlled assembly of GO-AgNP by electrostatic-directed heterogeneous aggregation between GO and bovine serum albumin (BSA)-functionalized AgNP under an acidic environment. Additionally, physical size, mass, and conformation (i.e., number of AgNP per nanohybrid) of GO-AgNP were shown to be proportional to the number concentration ratio of AgNP to GO (R) and the selected electrical mobility diameter. An analysis of colloidal stability of GO-AgNP indicates that the stability increased with its absolute ZP, which was dependent on R and environmental pH. The work presented here provides a proof of concept for systematically synthesizing hybrid colloidal nanomaterials through the tuning of surface chemistry in aqueous phase with the ability in quantitative characterization. Graphical Abstract Colloidal assembly of graphene oxide-silver nanoparticle hybrids characterized by aerosol differential mobility-coupled mass analyses.

Assessing the Geomorphic Evolution and Hydrographic Changes Induced by Winter Storms along the Louisiana Coast

NASA Technical Reports Server (NTRS)

Menzel, W. Paul; Moeller, Christopher, C; Huh, Oscar K.; Roberts, Harry H.

1998-01-01

The influence that cold front passages have on Louisiana coastal environments, including land loss and land building processes, has been the primary topic of this multidisciplinary research. This research has combined meteorological, remote sensing, and coastal expertise from the University of Wisconsin (UW) and Louisiana State University (LSU). Analyzed data sets include remotely sensed radiometric data (AVHRR on NOAA-12,13,14, Multispectral Atmospheric Mapping Sensor (MAMS) and MODIS Airborne Simulator (MAS) on NASA ER-2), U.S. Army Corps of Engineers (USACE) water level data, water quality data from the Coastal Studies Institute (CSI) at LSU, USACE river discharge data, National Weather Service (NWS) and CSI wind in sitzi measurements, geomorphic measurements from aerial photography (NASA ER-2 and Learjet), and CSI ground based sediment burial pipes (for monitoring topographic change along the Louisiana coast) and sediment cores. The work reported here-in is a continuation of an initial investigation into coastal Louisiana landform modification by cold front systems. That initial effort demonstrated the importance of cold front winds in the Atchafalaya Bay sediment plume distribution (Moeller et al.), documented the sediment transport and deposition process of the western Louisiana coast (Huh et al.) and developed tools (e.g. water types identification, suspended solids estimation) from multispectral radiometric data for application to the current study. This study has extended that work, developing a Geomorphic Impact Index (GI(sup 2)) for relating atmospheric forcing to coastal response and new tools to measure water motion and sediment transport.

A Second-Generation Device for Automated Training and Quantitative Behavior Analyses of Molecularly-Tractable Model Organisms

PubMed Central

Blackiston, Douglas; Shomrat, Tal; Nicolas, Cindy L.; Granata, Christopher; Levin, Michael

2010-01-01

A deep understanding of cognitive processes requires functional, quantitative analyses of the steps leading from genetics and the development of nervous system structure to behavior. Molecularly-tractable model systems such as Xenopus laevis and planaria offer an unprecedented opportunity to dissect the mechanisms determining the complex structure of the brain and CNS. A standardized platform that facilitated quantitative analysis of behavior would make a significant impact on evolutionary ethology, neuropharmacology, and cognitive science. While some animal tracking systems exist, the available systems do not allow automated training (feedback to individual subjects in real time, which is necessary for operant conditioning assays). The lack of standardization in the field, and the numerous technical challenges that face the development of a versatile system with the necessary capabilities, comprise a significant barrier keeping molecular developmental biology labs from integrating behavior analysis endpoints into their pharmacological and genetic perturbations. Here we report the development of a second-generation system that is a highly flexible, powerful machine vision and environmental control platform. In order to enable multidisciplinary studies aimed at understanding the roles of genes in brain function and behavior, and aid other laboratories that do not have the facilities to undergo complex engineering development, we describe the device and the problems that it overcomes. We also present sample data using frog tadpoles and flatworms to illustrate its use. Having solved significant engineering challenges in its construction, the resulting design is a relatively inexpensive instrument of wide relevance for several fields, and will accelerate interdisciplinary discovery in pharmacology, neurobiology, regenerative medicine, and cognitive science. PMID:21179424

Geomorphic and biophysical factors affecting water tracks in northern Alaska

NASA Astrophysics Data System (ADS)

Trochim, E. D.; Jorgenson, M. T.; Prakash, A.; Kane, D. L.

2016-03-01

A better understanding of water movement on hillslopes in Arctic environments is necessary for evaluating the effects of climate variability. Drainage networks include a range of features that vary in transport capacity from rills to water tracks to rivers. This research focuses on describing and classifying water tracks, which are saturated linear-curvilinear stripes that act as first-order pathways for transporting water off of hillslopes into valley bottoms and streams. Multiple factor analysis was used to develop five water tracks classes based on their geomorphic, soil, and vegetation characteristics. The water track classes were then validated using conditional inference trees, to verify that the classes were repeatable. Analysis of the classes and their characteristics indicate that water tracks cover a broad spectrum of patterns and processes primarily driven by surficial geology. This research demonstrates an improved approach to quantifying water track characteristics for specific areas, which is a major step toward understanding hydrological processes and feedbacks within a region.

A geomorphic approach to 100-year floodplain mapping for the Conterminous United States

NASA Astrophysics Data System (ADS)

Jafarzadegan, Keighobad; Merwade, Venkatesh; Saksena, Siddharth

2018-06-01

Floodplain mapping using hydrodynamic models is difficult in data scarce regions. Additionally, using hydrodynamic models to map floodplain over large stream network can be computationally challenging. Some of these limitations of floodplain mapping using hydrodynamic modeling can be overcome by developing computationally efficient statistical methods to identify floodplains in large and ungauged watersheds using publicly available data. This paper proposes a geomorphic model to generate probabilistic 100-year floodplain maps for the Conterminous United States (CONUS). The proposed model first categorizes the watersheds in the CONUS into three classes based on the height of the water surface corresponding to the 100-year flood from the streambed. Next, the probability that any watershed in the CONUS belongs to one of these three classes is computed through supervised classification using watershed characteristics related to topography, hydrography, land use and climate. The result of this classification is then fed into a probabilistic threshold binary classifier (PTBC) to generate the probabilistic 100-year floodplain maps. The supervised classification algorithm is trained by using the 100-year Flood Insurance Rated Maps (FIRM) from the U.S. Federal Emergency Management Agency (FEMA). FEMA FIRMs are also used to validate the performance of the proposed model in areas not included in the training. Additionally, HEC-RAS model generated flood inundation extents are used to validate the model performance at fifteen sites that lack FEMA maps. Validation results show that the probabilistic 100-year floodplain maps, generated by proposed model, match well with both FEMA and HEC-RAS generated maps. On average, the error of predicted flood extents is around 14% across the CONUS. The high accuracy of the validation results shows the reliability of the geomorphic model as an alternative approach for fast and cost effective delineation of 100-year floodplains for the CONUS.

The hydrological function of upland swamps in eastern Australia: The role of geomorphic condition in regulating water storage and discharge

NASA Astrophysics Data System (ADS)

Cowley, Kirsten L.; Fryirs, Kirstie A.; Hose, Grant C.

2018-06-01

Temperate Highland Peat Swamps on Sandstone (THPSS) are a type of wetland found in low-order streams on the plateaus of eastern Australia. They are sediment and organic matter accumulation zones, which combined with a climate of high rainfall and low evaporation function as water storage systems. Changes to the geomorphic structure of these systems via incision and channelisation can have profound impacts on their hydrological function. The aim of this study was to develop an understanding of how changes to the geomorphic structure of these systems alter their hydrological function, measured as changes and variability in swamp water table levels and discharge. We monitored the water table levels and discharges of three intact and three channelised THPSS in the Blue Mountains between March 2015 and June 2016. We found that water levels in intact swamps were largely stable over the monitoring period. Water levels rose only in high rainfall events, returned quickly to antecedent levels after rain, and drawdown during dry periods was not significant. In contrast, the water table levels in channelised THPSS were highly variable. Water levels rose quickly after almost all rainfall events and declined significantly during dry periods. Discharge also showed marked differences with the channelised THPSS discharging 13 times more water than intact swamps, even during dry periods. Channelised THPSS also had flashier storm hydrographs than intact swamps. These results have profound implications for the capacity of these swamps to act as water storage reservoirs in the headwaters of catchments and for their ability to maintain base flow to downstream catchments during dry times. Changes to geomorphic structure and hydrological function also have important implications for a range of other swamp functions such as carbon storage, emission and exports, contaminant sorption, downstream water quality and biodiversity, as well as the overall fate of these swamps under a changing

Multivariate Quantitative Chemical Analysis

NASA Technical Reports Server (NTRS)

Kinchen, David G.; Capezza, Mary

1995-01-01

Technique of multivariate quantitative chemical analysis devised for use in determining relative proportions of two components mixed and sprayed together onto object to form thermally insulating foam. Potentially adaptable to other materials, especially in process-monitoring applications in which necessary to know and control critical properties of products via quantitative chemical analyses of products. In addition to chemical composition, also used to determine such physical properties as densities and strengths.

Application of Mixed-Methods Approaches to Higher Education and Intersectional Analyses

ERIC Educational Resources Information Center

Griffin, Kimberly A.; Museus, Samuel D.

2011-01-01

In this article, the authors discuss the utility of combining quantitative and qualitative methods in conducting intersectional analyses. First, they discuss some of the paradigmatic underpinnings of qualitative and quantitative research, and how these methods can be used in intersectional analyses. They then consider how paradigmatic pragmatism…

Temporal and spatial scales of geomorphic adjustments to reduced competency following flow regulation in bedload-dominated systems

NASA Astrophysics Data System (ADS)

Curtis, Katherine E.; Renshaw, Carl E.; Magilligan, Francis J.; Dade, William B.

2010-05-01

Because of the combined effects of reduced sediment transport capacity and competency following flow regulation, morphological changes are expected to occur in channels downstream from dams and, specifically, at tributary junctions where local inputs of water and sediment occur. Using a combination of historical aerial photographs, mainstem- and tributary-channel pebble counts, and HEC-RAS flow modeling for two watersheds in south-central VT, one unregulated and the other regulated since 1961, we document the time series of post-regulation channel narrowing and associated bar growth due to the influx of tributary sediment. Channel adjustments at regulated tributary junctions have been significant in ca. 50 years following impoundment, with channels downstream of the confluences narrowing over 15% after an initial ca. 20-year lag before the onset of accelerated narrowing. Moreover, flow modeling suggests that downstream of regulated confluences, the modern median grain size ( d50) along the channel bed is immobile. No significant channel narrowing has occurred either above or below unregulated tributary junctions or on the mainstem upstream of regulated confluences. However, greater channel sediment fining is observed upstream of regulated confluences than above unregulated confluences. Thus, the primary mode of mainstem channel adjustment differs up- and downstream of regulated tributaries. These confluence effects have occurred where the tributary drainage area is only 0.2 times that of the mainstem, well below the threshold ratio of 0.6 required for significant geomorphic effects at unregulated confluences, highlighting the geomorphic scale shift of dams. Lastly, we evaluate the downstream length required for a river to recover from the impacts of impoundment and demonstrate that even distal locations are impacted by flow regulation. Unlike the impacts of flow regulation in the western US where channel incision and bar erosion predominate following impoundment

Analyzing the impacts of global trade and investment on non-communicable diseases and risk factors: a critical review of methodological approaches used in quantitative analyses.

PubMed

Cowling, Krycia; Thow, Anne Marie; Pollack Porter, Keshia

2018-05-24

A key mechanism through which globalization has impacted health is the liberalization of trade and investment, yet relatively few studies to date have used quantitative methods to investigate the impacts of global trade and investment policies on non-communicable diseases and risk factors. Recent reviews of this literature have found heterogeneity in results and a range of quality across studies, which may be in part attributable to a lack of conceptual clarity and methodological inconsistencies. This study is a critical review of methodological approaches used in the quantitative literature on global trade and investment and diet, tobacco, alcohol, and related health outcomes, with the objective of developing recommendations and providing resources to guide future robust, policy relevant research. A review of reviews, expert review, and reference tracing were employed to identify relevant studies, which were evaluated using a novel quality assessment tool designed for this research. Eight review articles and 34 quantitative studies were identified for inclusion. Important ways to improve this literature were identified and discussed: clearly defining exposures of interest and not conflating trade and investment; exploring mechanisms of broader relationships; increasing the use of individual-level data; ensuring consensus and consistency in key confounding variables; utilizing more sector-specific versus economy-wide trade and investment indicators; testing and adequately adjusting for autocorrelation and endogeneity when using longitudinal data; and presenting results from alternative statistical models and sensitivity analyses. To guide the development of future analyses, recommendations for international data sources for selected trade and investment indicators, as well as key gaps in the literature, are presented. More methodologically rigorous and consistent approaches in future quantitative studies on the impacts of global trade and investment policies on non

Erosion and Deposition Monitoring Using High-Density Aerial Lidar and Geomorphic Change Detection Software Analysis at Los Alamos National Laboratory, Los Alamos New Mexico, LA-UR-17-26743

NASA Astrophysics Data System (ADS)

Walker, T.; Kostrubala, T. L.; Muggleton, S. R.; Veenis, S.; Reid, K. D.; White, A. B.

2017-12-01

The Los Alamos National Laboratory storm water program installed sediment transport mitigation structures to reduce the migration of contaminants within the Los Alamos and Pueblo (LA/P) watershed in Los Alamos, NM. The goals of these structures are to minimize storm water runoff and erosion, enhance deposition, and reduce mobility of contaminated sediments. Previous geomorphological monitoring used GPS surveyed cross-sections on a reach scale to interpolate annual geomorphic change in sediment volumes. While monitoring has confirmed the LA/P watershed structures are performing as designed, the cross-section method proved difficult to estimate uncertainty and the coverage area was limited. A new method, using the Geomorphic Change Detection (GCD) plugin for ESRI ArcGIS developed by Wheaton et al. (2010), with high-density aerial lidar data, has been used to provide high confidence uncertainty estimates and greater areal coverage. Following the 2014 monsoon season, airborne lidar data has been collected annually and the resulting DEMs processed using the GCD method. Additionally, a more accurate characterization of low-amplitude geomorphic changes, typical of low-flow/low-rainfall monsoon years, has been documented by applying a spatially variable error to volume change calculations using the GCD based fuzzy inference system (FIS). The FIS method allows for the calculation of uncertainty based on data set quality and density e.g. point cloud density, ground slope, and degree of surface roughness. At the 95% confidence level, propagated uncertainty estimates of the 2015 and 2016 lidar DEM comparisons yielded detectable changes greater than 0.3 m - 0.46 m. Geomorphic processes identified and verified in the field are typified by low-amplitude, within-channel aggradation and incision and out of channel bank collapse that over the course of a monsoon season result in localized and dectetable change. While the resulting reach scale volume change from 2015 - 2016 was often

Landscape geomorphic characteristic impacts on greenhouse gas fluxes in exposed stream and riparian sediments.

PubMed

Vidon, Philippe; Serchan, Satish

2016-07-13

While excessive releases of greenhouse gases (GHG: N2O, CO2, CH4) to the atmosphere due to the burning of fossil fuel remains a concern, we also need to better quantify GHG emissions from natural systems. This study investigates GHG fluxes at the soil-atmosphere interface in a series of 7 stream reaches (riparian zones + exposed streambed sediment) across a range of geomorphic locations from headwaters reaches to lowland wetland reaches. When riparian fluxes (RZ) are compared to fluxes from in-stream locations (IS) under summer baseflow conditions, total CO2-equivalent (CO2eq) emissions are approximately 5 times higher at RZ locations than at IS locations, with most CO2eq driven by CH4 production at RZ locations where wet conditions dominate (headwater wetlands, lowland wetlands). On a gas-by-gas basis, no clear differences in N2O fluxes between RZ and IS locations were observed regardless of locations (headwater vs. lowland reaches), while CO2 fluxes were significantly larger at RZ locations than IS locations. Methane fluxes were significantly higher in wetland-influenced reaches than other reaches for both RZ and IS locations. However, GHG fluxes were not consistently correlated to DOC, DO, NO3(-), NH4(+), or water temperature, stressing the limitations of using water quality parameters to predict GHG emissions at the floodplain scale, at least during summer baseflow conditions. As strategies are developed to further constrain GHG emission for whole watersheds, we propose that approaches linking landscape geomorphic characteristics to GHG fluxes at the soil-atmosphere interface offer a promising avenue to successfully predict GHG emissions in floodplains at the watershed scale.

Geomorphic controls on elevational gradients of species richness.

PubMed

Bertuzzo, Enrico; Carrara, Francesco; Mari, Lorenzo; Altermatt, Florian; Rodriguez-Iturbe, Ignacio; Rinaldo, Andrea

2016-02-16

Elevational gradients of biodiversity have been widely investigated, and yet a clear interpretation of the biotic and abiotic factors that determine how species richness varies with elevation is still elusive. In mountainous landscapes, habitats at different elevations are characterized by different areal extent and connectivity properties, key drivers of biodiversity, as predicted by metacommunity theory. However, most previous studies directly correlated species richness to elevational gradients of potential drivers, thus neglecting the interplay between such gradients and the environmental matrix. Here, we investigate the role of geomorphology in shaping patterns of species richness. We develop a spatially explicit zero-sum metacommunity model where species have an elevation-dependent fitness and otherwise neutral traits. Results show that ecological dynamics over complex terrains lead to the null expectation of a hump-shaped elevational gradient of species richness, a pattern widely observed empirically. Local species richness is found to be related to the landscape elevational connectivity, as quantified by a newly proposed metric that applies tools of complex network theory to measure the closeness of a site to others with similar habitat. Our theoretical results suggest clear geomorphic controls on elevational gradients of species richness and support the use of the landscape elevational connectivity as a null model for the analysis of the distribution of biodiversity.

Flash floods, hydro-geomorphic response and risk management

NASA Astrophysics Data System (ADS)

Braud, Isabelle; Borga, Marco; Gourley, Jonathan; Hürlimann, Marcel; Zappa, Massimilano; Gallart, Francesc

2016-10-01

Each year, natural disasters are responsible for fatalities and economic losses worldwide with 101 billion USD in economic losses and 7000 fatalities reported for 2014 (SwissRE, 2015). Even if earthquakes are responsible for most of these fatalities, flash floods and landslides are recognized as a significant source of threat to human lives (SwissRE, 2015). Jonkman (2005), in a global assessment of flood-related casualties, showed that flash floods lead to the highest mortality (number of fatalities divided by the number of affected people). They are also often associated with shallow landslides and geomorphic processes that can increase threat to human lives. Analysis of a global data set of fatalities from non-seismically triggered landslides (Petley, 2012) shows that 2620 fatal landslides were recorded worldwide in the period 2004-2010, causing a total of 32,322 recorded fatalities. In addition, heavy precipitation events, at the origin of flash floods and shallow landsliding are expected to increase in the future (e.g. Scoccimarro et al., 2016 for a recent study in Europe). Progress in flash floods and landslides understanding, forecasting and warning is therefore still needed to disentangle the complex interactions between hazards, exposure and vulnerability and to increase resilience (Borga et al., 2014).

Geomorphic controls on elevational gradients of species richness

PubMed Central

Bertuzzo, Enrico; Carrara, Francesco; Mari, Lorenzo; Altermatt, Florian; Rodriguez-Iturbe, Ignacio; Rinaldo, Andrea

2016-01-01

Elevational gradients of biodiversity have been widely investigated, and yet a clear interpretation of the biotic and abiotic factors that determine how species richness varies with elevation is still elusive. In mountainous landscapes, habitats at different elevations are characterized by different areal extent and connectivity properties, key drivers of biodiversity, as predicted by metacommunity theory. However, most previous studies directly correlated species richness to elevational gradients of potential drivers, thus neglecting the interplay between such gradients and the environmental matrix. Here, we investigate the role of geomorphology in shaping patterns of species richness. We develop a spatially explicit zero-sum metacommunity model where species have an elevation-dependent fitness and otherwise neutral traits. Results show that ecological dynamics over complex terrains lead to the null expectation of a hump-shaped elevational gradient of species richness, a pattern widely observed empirically. Local species richness is found to be related to the landscape elevational connectivity, as quantified by a newly proposed metric that applies tools of complex network theory to measure the closeness of a site to others with similar habitat. Our theoretical results suggest clear geomorphic controls on elevational gradients of species richness and support the use of the landscape elevational connectivity as a null model for the analysis of the distribution of biodiversity. PMID:26831107

Challenges in Upscaling Geomorphic Transport Laws: Scale-dependence of Local vs. Non-local Formalisms and Derivation of Closures (Invited)

NASA Astrophysics Data System (ADS)

Foufoula-Georgiou, E.; Ganti, V. K.; Passalacqua, P.

2010-12-01

Nonlinear geomorphic transport laws are often derived from mechanistic considerations at a point, and yet they are implemented on 90m or 30 m DEMs, presenting a mismatch in the scales of derivation and application of the flux laws. Since estimates of local slopes and curvatures are known to depend on the scale of the DEM used in their computation, two questions arise: (1) how to meaningfully compensate for the scale dependence, if any, of local transport laws? and (2) how to formally derive, via upscaling, constitutive laws that are applicable at larger scales? Recently, non-local geomorphic transport laws for sediment transport on hillslopes have been introduced using the concept of an integral flux that depends on topographic attributes in the vicinity of a point of interest. In this paper, we demonstrate the scale dependence of local nonlinear hillslope sediment transport laws and derive a closure term via upscaling (Reynolds averaging). We also show that the non-local hillslope transport laws are inherently scale independent owing to their non-local, scale-free nature. These concepts are demonstrated via an application to a small subbasin of the Oregon Coast Range using 2m LiDAR topographic data.

Geomorphic and Geologic Controls of Geohazards induced by Nepal's 2015 Gorkha Earthquake

NASA Technical Reports Server (NTRS)

Kargel, J. S.; Leonard, G. J.; Shugar, D. H.; Haritashya, U.K.; Bevington, A.; Fielding, E. J.; Fujita, K.; Geertsema, M.; Miles, E. S.; Steiner, J.;

2D Hydrodynamic Based Logic Modeling Tool for River Restoration Decision Analysis: A Quantitative Approach to Project Prioritization

NASA Astrophysics Data System (ADS)

Bandrowski, D.; Lai, Y.; Bradley, N.; Gaeuman, D. A.; Murauskas, J.; Som, N. A.; Martin, A.; Goodman, D.; Alvarez, J.

2014-12-01

In the field of river restoration sciences there is a growing need for analytical modeling tools and quantitative processes to help identify and prioritize project sites. 2D hydraulic models have become more common in recent years and with the availability of robust data sets and computing technology, it is now possible to evaluate large river systems at the reach scale. The Trinity River Restoration Program is now analyzing a 40 mile segment of the Trinity River to determine priority and implementation sequencing for its Phase II rehabilitation projects. A comprehensive approach and quantitative tool has recently been developed to analyze this complex river system referred to as: 2D-Hydrodynamic Based Logic Modeling (2D-HBLM). This tool utilizes various hydraulic output parameters combined with biological, ecological, and physical metrics at user-defined spatial scales. These metrics and their associated algorithms are the underpinnings of the 2D-HBLM habitat module used to evaluate geomorphic characteristics, riverine processes, and habitat complexity. The habitat metrics are further integrated into a comprehensive Logic Model framework to perform statistical analyses to assess project prioritization. The Logic Model will analyze various potential project sites by evaluating connectivity using principal component methods. The 2D-HBLM tool will help inform management and decision makers by using a quantitative process to optimize desired response variables with balancing important limiting factors in determining the highest priority locations within the river corridor to implement restoration projects. Effective river restoration prioritization starts with well-crafted goals that identify the biological objectives, address underlying causes of habitat change, and recognizes that social, economic, and land use limiting factors may constrain restoration options (Bechie et. al. 2008). Applying natural resources management actions, like restoration prioritization, is

Analysis of airborne LiDAR surveys to quantify the characteristic morphologies of northern forested wetlands

Treesearch

Murray C. Richardson; Carl P. J. Mitchell; Brian A. Branfireun; Randall K. Kolka

2010-01-01

A new technique for quantifying the geomorphic form of northern forested wetlands from airborne LiDAR surveys is introduced, demonstrating the unprecedented ability to characterize the geomorphic form of northern forested wetlands using high-resolution digital topography. Two quantitative indices are presented, including the lagg width index (LWI) which objectively...

Geomorphic impacts of the 2011 tsunami on the lower reaches of the R. Natori, northeast Japan

NASA Astrophysics Data System (ADS)

Shimazu, H.

2012-04-01

The tsunami caused by "the 2011 off the Pacific coast of Tohoku Earthquake" attacked Japan's east coast and inundated a large extent of the lowlands. The strong flood flow went upstream in the lower reaches of the rivers. The lower reaches of the rivers in Japan usually have unprotected dry riverbeds separated by dykes from floodplains where people live. The tsunami went upstream not only in the channels but also in the dry riverbeds. There is 1 kilometers wide unprotected dry riverbed in the lower reaches of the R. Natori, northeast Japan and they were used for vegetable farmlands. This study aims to discuss the geomorphic impacts of the tsunami on the dry riverbed in the lower reaches of the R. Natori. Surface sediments, micro-landforms and damages to agricultural facilities such as small poly tunnels, plastic mulches and support posts were examined to reconstruct the geomorphic impacts. Fieldworks were carried out at the beginning of May, 50 days after the tsunami disaster, and the end of August. Height of the tsunami near the river mouth was estimated over 3 meters. The flood flow went upstream to the sites at an elevation of 4 meters, 9 kilometers from the river mouth in the channel and 6.5 kilometers in the dry riverbed. Because the tsunami deposits are light colored sand and silt containing salinity, they could be distinguished from brown cultivated soil easily. The geomorphic impacts on the dry riverbed changed longitudinally. In the lowest 2.5 kilometers reaches strong flood flow and ebb flow caused strong erosion. It accounted for thin tsunami deposits with seashells and beach gravels, eroded scar, and dunes of downstream direction in the dry riverbed. In the next 1.5 kilometers reaches agricultural facilities were washed away or fell over upstream direction. Although the flood flow was still devastating, strength of the ebb flow gradually weakened. In this reaches dominant sedimentation process caused the tsunami deposits over 10 centimeters thick. In

A quantitative image cytometry technique for time series or population analyses of signaling networks.

PubMed

Ozaki, Yu-ichi; Uda, Shinsuke; Saito, Takeshi H; Chung, Jaehoon; Kubota, Hiroyuki; Kuroda, Shinya

2010-04-01

Modeling of cellular functions on the basis of experimental observation is increasingly common in the field of cellular signaling. However, such modeling requires a large amount of quantitative data of signaling events with high spatio-temporal resolution. A novel technique which allows us to obtain such data is needed for systems biology of cellular signaling. We developed a fully automatable assay technique, termed quantitative image cytometry (QIC), which integrates a quantitative immunostaining technique and a high precision image-processing algorithm for cell identification. With the aid of an automated sample preparation system, this device can quantify protein expression, phosphorylation and localization with subcellular resolution at one-minute intervals. The signaling activities quantified by the assay system showed good correlation with, as well as comparable reproducibility to, western blot analysis. Taking advantage of the high spatio-temporal resolution, we investigated the signaling dynamics of the ERK pathway in PC12 cells. The QIC technique appears as a highly quantitative and versatile technique, which can be a convenient replacement for the most conventional techniques including western blot, flow cytometry and live cell imaging. Thus, the QIC technique can be a powerful tool for investigating the systems biology of cellular signaling.

On the non-uniqueness of the hydro-geomorphic responses in a zero-order catchment with respect to soil moisture

NASA Astrophysics Data System (ADS)

Kim, Jongho; Dwelle, M. Chase; Kampf, Stephanie K.; Fatichi, Simone; Ivanov, Valeriy Y.

2016-06-01

This study advances mechanistic interpretation of predictability challenges in hydro-geomorphology related to the role of soil moisture spatial variability. Using model formulations describing the physics of overland flow, variably saturated subsurface flow, and erosion and sediment transport, this study explores (1) why a basin with the same mean soil moisture can exhibit distinctly different spatial moisture distributions, (2) whether these varying distributions lead to non-unique hydro-geomorphic responses, and (3) what controls non-uniqueness in relation to the response type. Two sets of numerical experiments are carried out with two physically-based models, HYDRUS and tRIBS+VEGGIE+FEaST, and their outputs are analyzed with respect to pre-storm moisture state. The results demonstrate that distinct spatial moisture distributions for the same mean wetness arise because near-surface soil moisture dynamics exhibit different degrees of coupling with deeper-soil moisture and the process of subsurface drainage. The consequences of such variations are different depending on the type of hydrological response. Specifically, if the predominant runoff response is of infiltration excess type, the degree of non-uniqueness is related to the spatial distribution of near-surface moisture. If runoff is governed by subsurface stormflow, the extent of deep moisture contributing area and its "readiness to drain" determine the response characteristics. Because the processes of erosion and sediment transport superimpose additional controls over factors governing runoff generation and overland flow, non-uniqueness of the geomorphic response can be highly dampened or enhanced. The explanation is sediment composed by multi-size particles can alternate states of mobilization or surface shielding and the transient behavior is inherently intertwined with the availability of mobile particles. We conclude that complex nonlinear dynamics of hydro-geomorphic processes are inherent expressions

Transient Fluvial Response to Alpine Deglaciation, Mount Rainier, WA: Geomorphic Process Domains and Proglacial Flux Controls on Channel Evolution.

NASA Astrophysics Data System (ADS)

Beyeler, J. D.; Montgomery, D.; Kennard, P. M.

2016-12-01

Downwasting of all glaciers on the flanks of Mount Rainier, WA, in recent decades has debuttressed Little Ice Age glaciogenic sediments driving proglacial responses to regionally warming climate. Rivers draining the deglaciating edifice are responding to paraglacial sedimentation processes through transient storage of retreat-liberated sediments in aggrading (e.g., >5m) fluvial networks with widening channel corridors (i.e., 50-150%) post-LIA (ca., 1880-1910 locally). We hypothesize that the downstream transmission of proglacial fluxes (i.e., sediment and water) through deglaciating alpine terrain is a two-step geomorphic process. The ice-proximal portion of the proglacial system is dominated by the delivery of high sediment-to-water ratio flows (i.e., hyperconcentrated and debris slurries) and sediment retention by in-channel accumulation (e.g., confined debris fans within channel margins of valley segments) exacerbated by recruitment and accumulation of large wood (e.g., late seral stage conifers), whereas ice-distal fluvial reworking of transient sediment accumulations generates downstream aggradation. Historical Carbon River observations show restricted ice-proximal proglacial aggradation until a mainstem avulsion in 2009 initiated incision into sediment accumulations formed in recent decades, which is translating into aggradation farther down the network. Surficial morphology mapped with GPS, exposed subsurface sedimentology, and preliminary dating of buried trees suggest a transitional geomorphic process zone has persisted along the proglacial Carbon River through recent centuries and prior to the ultimate LIA glaciation. Structure-from-motion DEM differencing through the 2016 water year shows discrete zones of proglacial evolution through channel-spanning bed aggradation forced by interactions between large wood and sediment-rich flows that transition to fluvial process dominance as sediment is transported downstream. Long-term DEM differencing suggests

Evaluation of Geomorphic Changes, Using Landsat Data and its Impact on Coastal Community

NASA Astrophysics Data System (ADS)

Mahar, G. A.

2017-12-01

temporal study with the help of landsat satellite image has been carried out to assess the degree of the geomorphic degradation of different deltaic features and its consequent impact on the demography and socioeconomics of the people. Interactive correlation of the present analyses of the Indus water-flow in relation to the manmade water divergent structures reveals that the massive water divergence to upstream areas by depleting water availability into the downstream areas have caused severe imbalance in the equilibrium between the fluvial and marine hydrodynamics. The dominance of the marine hydrodynamic conditions have caused irreversible damage to the physical environment due to the rapid landward sea invasion. Based on the results of the present study it has been identified that i) the coastline is rapidly retreating; ii) individual creeks and the creeks' network are enlarging by the erosional phenomenon laterally as well as longitudinally; iii) tidally influenced areas are rapidly expanding; iv) overall area of the deltaic lakes is reducing but the frequency of the lakes occurrences is increasing; v) the course and the thalweg of the Indus river is widening seaward and narrowing landward; vi) populated areas along the coastline have been evacuated due to the massive seawater intrusions; vii) agricultural and fishing activities are tremendously declining and viii) food productivity per acre is decreasing. Moreover, it is also revealed that i) the shelf slope is steeping and retreating faster and ii) geometry of the Indus canyon is also rapidly changing. This phenomenon has affected the socio-economic of the coastal community and from many place force them to move from their native places.

Quantitative analyses of tartaric acid based on terahertz time domain spectroscopy

NASA Astrophysics Data System (ADS)

Cao, Binghua; Fan, Mengbao

2010-10-01

Terahertz wave is the electromagnetic spectrum situated between microwave and infrared wave. Quantitative analysis based on terahertz spectroscopy is very important for the application of terahertz techniques. But how to realize it is still under study. L-tartaric acid is widely used as acidulant in beverage, and other food, such as soft drinks, wine, candy, bread and some colloidal sweetmeats. In this paper, terahertz time-domain spectroscopy is applied to quantify the tartaric acid. Two methods are employed to process the terahertz spectra of different samples with different content of tartaric acid. The first one is linear regression combining correlation analysis. The second is partial least square (PLS), in which the absorption spectra in the 0.8-1.4THz region are used to quantify the tartaric acid. To compare the performance of these two principles, the relative error of the two methods is analyzed. For this experiment, the first method does better than the second one. But the first method is suitable for the quantitative analysis of materials which has obvious terahertz absorption peaks, while for material which has no obvious terahertz absorption peaks, the second one is more appropriate.

Meteorologic, oceanographic, and geomorphic controls on circulation and residence time in a coral reef-lined embayment: Faga'alu Bay, American Samoa

NASA Astrophysics Data System (ADS)

Storlazzi, C. D.; Cheriton, O. M.; Messina, A. M.; Biggs, T. W.

2018-06-01

Water circulation over coral reefs can determine the degree to which reef organisms are exposed to the overlying waters, so understanding circulation is necessary to interpret spatial patterns in coral health. Because coral reefs often have high geomorphic complexity, circulation patterns and the duration of exposure, or "local residence time" of a water parcel, can vary substantially over small distances. Different meteorologic and oceanographic forcings can further alter residence time patterns over reefs. Here, spatially dense Lagrangian surface current drifters and Eulerian current meters were used to characterize circulation patterns and resulting residence times over different regions of the reefs in Faga'alu Bay, American Samoa, during three distinct forcing periods: calm, strong winds, and large waves. Residence times varied among different geomorphic zones of the reef and were reflected in the spatially varying health of the corals across the embayment. The relatively healthy, seaward fringing reef consistently had the shortest residence times, as it was continually flushed by wave breaking at the reef crest, whereas the degraded, sheltered, leeward fringing reef consistently had the longest residence times, suggesting this area is more exposed to land-based sources of pollution. Strong wind forcing resulted in the longest residence times by pinning the water in the bay, whereas large wave forcing flushed the bay and resulted in the shortest residence times. The effect of these different forcings on residence times was fairly consistent across all reef geomorphic zones, with the shift from wind to wave forcing shortening mean residence times by approximately 50%. Although ecologically significant to the coral organisms in the nearshore reef zones, these shortened residence times were still 2-3 times longer than those associated with the seaward fringing reef across all forcing conditions, demonstrating how the geomorphology of a reef environment sets a

Age and prematurity of the Alps

NASA Astrophysics Data System (ADS)

Hergarten, Stefan; Stüwe, Kurt; Wagner, Thomas

2010-05-01

Although the Alps are among the best studied mountain ranges on Earth, the age of their topography is almost unknown. Even their relative stage of evolution is unclear: Are the Alps still growing, in a steady state or even decaying? Using the mean slope at given catchment size as a new geomorphic parameter we analyse the topography of the Alps. Our analysis provides one of the first quantitative constraints that shows that the range is still in its infancy: In contrast to several other mountain ranges, the Alps have still more than half of their evolution to a geomorphic steady state to go. Combining our results with sediment data from the surrounding accumulation spaces we infer that the formation of substantial topography began only 5-6 million years ago. Our results challenge a general consensus that the topographic evolution is distributed over much of the Miocene.

A high seroprevalence of antibodies to pertussis toxin among Japanese adults: Qualitative and quantitative analyses

PubMed Central

Moriuchi, Takumi; Otsuka, Nao; Hiramatsu, Yukihiro; Shibayama, Keigo

2017-01-01

In 2013, national serosurveillance detected a high seroprevalence of antibodies to pertussis toxin (PT) from Bordetella pertussis among Japanese adults. Thus, we aimed to determine the cause(s) of this high seroprevalence, and analyzed the titers of antibodies to PT and filamentous hemagglutinin (FHA) among adults (35–44 years old), young children (4–7 years old), and older children (10–14 years old). Our quantitative analyses revealed that adults had higher seroprevalences of anti-PT IgG and PT-neutralizing antibodies, and similar titers of anti-FHA IgG, compared to the young and older children. Positive correlations were observed between the titers of PT-neutralizing antibodies and anti-PT IgG in all age groups (rs values of 0.326–0.522), although the correlation tended to decrease with age. The ratio of PT-neutralizing antibodies to anti-PT IgG was significantly different when we compared the serum and purified IgG fractions among adults (p = 0.016), although this result was not observed among young and older children. Thus, it appears that some adults had non-IgG immunoglobulins to PT. Our analyses also revealed that adults had high-avidity anti-PT IgG (avidity index: 63.5%, similar results were observed among the children); however, the adults had lower-avidity anti-FHA IgG (37.9%, p < 0.05). It is possible that low-avidity anti-FHA IgG is related to infection with other respiratory pathogens (e.g., Bordetella parapertussis, Haemophilus influenzae, or Mycoplasma pneumoniae), which produces antibodies to FHA-like proteins. Our observations suggest that these adults had been infected with B. pertussis and other pathogen(s) during their adulthood. PMID:28700751

A Geomorphic Analysis of Floodplain Lakes along the Embanked Lower Mississippi River for Managing Hydrologic Connectivity

NASA Astrophysics Data System (ADS)

Hudson, Paul; Boot, Dax; Sounny-Slitinne, M. Anwar; Kristensen, Kristiaan

2015-04-01

A Geomorphic Analysis of Floodplain Lakes along the Embanked Lower Mississippi River for Managing Hydrologic Connectivity Floodplain lakes are vital to the environmental integrity of lowland rivers. Embankment by levees (dikes) for flood control greatly reduces the size of lowland floodplains and is detrimental to the quality and functioning of floodplain water bodies, presenting a challenge to government agencies charged with environmental management. The embanked floodplain of the Lower Mississippi River is an enormous surface which includes a variety of lake types formed by geomorphic and anthropogenic processes. While much is known about the channel and hydrologic regime, very little is known about the physical structure and functioning of the embanked floodplain of the lower Mississippi. Importantly, management agencies do not have an inventory of the basic characteristics (e.g., type, frequency, location, size, shape) of water bodies within the lower Mississippi embanked floodplain. An analysis of lakes along the Lower Mississippi River embanked floodplain is performed by utilizing the National Hydrographic Dataset (NHD) from the U.S. Geological Survey, a LiDAR digital elevation model (DEM), as well as streamflow data from the USGS. The vector NHD data includes every official mapped water body (blue line polygons) on USGS topographic maps at scales of 1:100,000 and 1:24,000. Collectively, we identify thousands of discreet water bodies within the embanked floodplain. Utilizing planimetric properties the water bodies were classified into the following lake types: cutoffs (neck and chute), sloughs, crevasse (scour), local drainage (topographic), and borrow pits. The data is then statistically analyzed to examine significant differences in the spatial variability in lake types along the entire lower Mississippi embanked floodplain in association with geomorphic divisions and hydrologic regime. The total embanked floodplain area of the LMR is 7,303 km2,. The total

Geomorphic Influences on Large Wood Dam Loadings, Particulate Organic Matter and Dissolved Organic Carbon in an 0ld-Growth Northern Hardwood Watershed

Treesearch

P. Charles Goebel; Kurt S. Pregitzer; Brain J. Palik

2003-01-01

We quantified large wood loadings and seasonal concentrations of particulate organic matter (POM) and dissolved organic carbon (DOC) in three different geomonghic zones (each with unique hydrogeomorphic characteristics) of a pristine, old-growth northern hardwood watershed. The highest large wood dam loadings were in the high-gradient, bedrock controlled geomorphic...

Geomorphic change along a gravel bed river affected by volcanic eruption: Rio Blanco - Volcan Chaiten (South Chile)

NASA Astrophysics Data System (ADS)

Picco, Lorenzo; Ravazzolo, Diego; Ulloa, Hector; Iroumé, Andres; Aristide Lenzi, Mario

2014-05-01

Gravel bed rivers are environments shaped by the balance of flow, sediment regimes, large wood (LW) and vegetation. Geomorphic changes are response to fluctuations and changes of runoff and sediment supply involving mutual interactions among these factors. Typically, many natural disasters (i.e. debris flows, floods and forest fires) can affect the river basin dynamics. Explosive volcanic eruptions present, instead, the potential of exerting severe impacts as, for example, filling river valleys or changing river network patterns thanks to massive deposition of tephra and volcanic sediment all over the main channel and over the basin. These consistent impacts can strongly affect both hydrology and sediment transport dynamics, all over the river system, producing huge geomorphic changes. During the last years there has been a consistent increase in the survey technologies that permit to monitor geomorphic changes and to estimate sediment budgets through repeat topographic surveys. The calculation of differences between subsequent DEMs (difference of DEMs, DoD) is a commonly applied method to analyze and quantify these dynamics. Typically the higher uncertainty values are registered in areas with higher topographic variability and lower point density. This research was conducted along a ~ 2.2 km-long sub-reach of the Blanco River (Southern Chile), a fourth-order stream that presents a mainly rainfall regime with winter peak flows. The May 2008 Chaitén volcanic eruption strongly affected the entire Rio Blanco basin. The entire valley was highly exposed to the pyroclastic and fluvial flows, which affected directly a consistent area of evergreen forests. Extreme runoff from the upper Blanco catchment aggraded the channel and deposited up to several meters of tephra, alluvium, and LW along the entire river system. Aims of this contribution are to define and quantify the short term evolution of the Blanco River after the big eruption event and a subsequent consistent

Quantitative characterisation of sedimentary grains

NASA Astrophysics Data System (ADS)

Tunwal, Mohit; Mulchrone, Kieran F.; Meere, Patrick A.

2016-04-01

Analysis of sedimentary texture helps in determining the formation, transportation and deposition processes of sedimentary rocks. Grain size analysis is traditionally quantitative, whereas grain shape analysis is largely qualitative. A semi-automated approach to quantitatively analyse shape and size of sand sized sedimentary grains is presented. Grain boundaries are manually traced from thin section microphotographs in the case of lithified samples and are automatically identified in the case of loose sediments. Shape and size paramters can then be estimated using a software package written on the Mathematica platform. While automated methodology already exists for loose sediment analysis, the available techniques for the case of lithified samples are limited to cases of high definition thin section microphotographs showing clear contrast between framework grains and matrix. Along with the size of grain, shape parameters such as roundness, angularity, circularity, irregularity and fractal dimension are measured. A new grain shape parameter developed using Fourier descriptors has also been developed. To test this new approach theoretical examples were analysed and produce high quality results supporting the accuracy of the algorithm. Furthermore sandstone samples from known aeolian and fluvial environments from the Dingle Basin, County Kerry, Ireland were collected and analysed. Modern loose sediments from glacial till from County Cork, Ireland and aeolian sediments from Rajasthan, India have also been collected and analysed. A graphical summary of the data is presented and allows for quantitative distinction between samples extracted from different sedimentary environments.

Characterizing the transient geomorphic response to base-level fall in the northeastern Tibetan Plateau

NASA Astrophysics Data System (ADS)

Zhang, Huiping; Kirby, Eric; Pitlick, John; Anderson, Robert S.; Zhang, Peizhen

2017-02-01

Analysis of hillslope gradient, landscape relief, and channel steepness in the Daxia River basin provides evidence of a transient geomorphic response to base-level fall on the northeastern Tibetan Plateau. Low-gradient channels and gentle hillslopes of the upper watershed are separated from a steeper, high-relief landscape by a series of convex knickzones along channel longitudinal profiles. Downstream projection of the "relict" portions of the profiles implies 800-850 m of incision, consistent with geologic and geomorphic records of post 1.7 Ma incision in the lower watershed. We combine optically stimulated luminescence dating of fluvial terrace deposits to constrain incision rates downstream of knickpoints with catchment-averaged 10Be concentrations in modern sediment to estimate erosion rates in tributary basins both above and below knickpoints. Both sources of data imply landscape lowering rates of 300 m Ma-1 below the knickpoint and 50-100 m Ma-1 above. Field measurements of channel width (n = 48) and calculations of bankfull discharge (n = 9) allow determination of scaling relations among channel hydraulic geometry, discharge, and contributing area that we employ to estimate the patterns of basal shear stress, unit stream power, and bed load transport rate throughout the channel network. Our results imply a clear downstream increase of incision potential; this result would appear to be consistent with a detachment-limited response to imposed base-level fall, in which steepening of channels drives an increase in erosion rates. In contrast, however, we do not observe apparent narrowing of channels across the transition from slowly eroding to rapidly eroding portions of the watershed. Rather, the present-day channel morphology as well as its scaling of hydraulic geometry imply that the river is primarily adjusted to transport its sediment load and suggest that channel morphology may not always reflect the presence of knickpoints and differences in landscape

Geomorphic and substrate controls on spatial variability in river solute transport and biogeochemical cycling

NASA Astrophysics Data System (ADS)

Blaen, Phillip; Kurz, Marie; Knapp, Julia; Mendoza-Lera, Clara; Lee-Cullin, Joe; Klaar, Megan; Drummond, Jen; Jaeger, Anna; Zarnetske, Jay; Lewandowski, Joerg; Marti, Eugenia; Ward, Adam; Fleckenstein, Jan; Datry, Thibault; Larned, Scott; Krause, Stefan

2016-04-01

Nutrient concentrations in surface waters and groundwaters are increasing in many agricultural catchments worldwide as a result of anthropogenic activities. Increasing geomorphological heterogeneity in river channels may help to attenuate nutrient pollution by facilitating water exchange fluxes with the hyporheic zone; a site of intense microbial activity where biogeochemical transformation rates (e.g. denitrification) can be high. However, the controls on spatial variability in biogeochemical cycling, particularly at scales relevant for river managers, are not well understood. Here, we aimed to assess: 1) how differences in geomorphological heterogeneity control river solute transport and rates of biogeochemical cycling at sub-reach scales (102 m); and 2) the relative magnitude of these differences versus those relating to reach scale substrate variability (103 m). We used the reactive 'smart' tracer resazurin (Raz), a weakly fluorescent dye that transforms to highly fluorescent resorufin (Rru) under mildly reducing conditions, as a proxy to assess rates of biogeochemical cycling in a lowland river in southern England. Solute tracer tests were conducted in two reaches with contrasting substrates: one sand-dominated and the other gravel-dominated. Each reach was divided into sub-reaches that varied in geomorphic complexity (e.g. by the presence of pool-riffle sequences or the abundance of large woody debris). Slug injections of Raz and the conservative tracer fluorescein were conducted in each reach during baseflow conditions (Q ≈ 80 L/s) and breakthrough curves monitored using in-situ fluorometers. Preliminary results indicate overall Raz:Rru transformation rates in the gravel-dominated reach were more than 50% higher than those in the sand-dominated reach. However, high sub-reach variability in Raz:Rru transformation rates and conservative solute transport parameters suggests small-scale targeted management interventions to alter geomorphic heterogeneity may be

Exogenic geomorphic processes dynamics at the Black Sea coast, Russia

NASA Astrophysics Data System (ADS)

Kuznetsova, Yulia; Tsvetkova, Daria

2017-04-01

Nowadays there is an obvious grow of anthropogenic load going on in many areas worldwide. Under such conditions, intensive activation of a number of exogenic geomorphic processes may be observed. Moreover, if natural environment is aggressive itself their dynamics and rates may reach enormous values. Our work is conducted at the Black Sea coast, known for its mountainous topography, wet subtropical climate and intensive anthropogenic development (especially during the last decade due to the recent Olympic games). We chose two key basins near Sochi, Russia to study a number of presented exogenic processes, including rill, gully and channel erosion, weathering, suffusion and piping, soil creep. A set of field study methods is used to monitor the processes dynamics since 2005 (and late 1970s for soil creep). In addition, soil erosion rates and landslide susceptibility were modelled to get information of the watersheds dynamics. This is ongoing work, but the results of the passed period of observations will be resented. Special attention is paid to the processes connectivity and their input into sediment redistribution over the river basins.

Geomorphic and geologic controls of geohazards induced by Nepal's 2015 Gorkha earthquake.

PubMed

Kargel, J S; Leonard, G J; Shugar, D H; Haritashya, U K; Bevington, A; Fielding, E J; Fujita, K; Geertsema, M; Miles, E S; Steiner, J; Anderson, E; Bajracharya, S; Bawden, G W; Breashears, D F; Byers, A; Collins, B; Dhital, M R; Donnellan, A; Evans, T L; Geai, M L; Glasscoe, M T; Green, D; Gurung, D R; Heijenk, R; Hilborn, A; Hudnut, K; Huyck, C; Immerzeel, W W; Liming, Jiang; Jibson, R; Kääb, A; Khanal, N R; Kirschbaum, D; Kraaijenbrink, P D A; Lamsal, D; Shiyin, Liu; Mingyang, Lv; McKinney, D; Nahirnick, N K; Zhuotong, Nan; Ojha, S; Olsenholler, J; Painter, T H; Pleasants, M; Pratima, K C; Yuan, Q I; Raup, B H; Regmi, D; Rounce, D R; Sakai, A; Donghui, Shangguan; Shea, J M; Shrestha, A B; Shukla, A; Stumm, D; van der Kooij, M; Voss, K; Xin, Wang; Weihs, B; Wolfe, D; Lizong, Wu; Xiaojun, Yao; Yoder, M R; Young, N

2016-01-08

The Gorkha earthquake (magnitude 7.8) on 25 April 2015 and later aftershocks struck South Asia, killing ~9000 people and damaging a large region. Supported by a large campaign of responsive satellite data acquisitions over the earthquake disaster zone, our team undertook a satellite image survey of the earthquakes' induced geohazards in Nepal and China and an assessment of the geomorphic, tectonic, and lithologic controls on quake-induced landslides. Timely analysis and communication aided response and recovery and informed decision-makers. We mapped 4312 coseismic and postseismic landslides. We also surveyed 491 glacier lakes for earthquake damage but found only nine landslide-impacted lakes and no visible satellite evidence of outbursts. Landslide densities correlate with slope, peak ground acceleration, surface downdrop, and specific metamorphic lithologies and large plutonic intrusions. Copyright © 2016, American Association for the Advancement of Science.

Varying effects of geomorphic change on floodplain inundation and forest communities

NASA Astrophysics Data System (ADS)

Keim, R.; Johnson, E. L.; Edwards, B. L.; King, S. L.; Hupp, C. R.

2015-12-01

Overbank flooding in floodplains is an important control on vegetation, but effects of changing flooding are difficult to predict because sensitivities of plant communities to multidimensional flooding (frequency, depth, duration, and timing) are not well understood. We used HEC-RAS to model the changing flooding regime in the lower White River floodplain, Arkansas, in response to rapid incision of the Mississippi River in the 1930s, and quantified flood frequency, depth, and duration by forest community type. Incision has decreased flooding especially in terms of frequency, which is one of the most important variables for ecological processes. Modeled depth-duration curves varied more among floodplain reaches than among forest communities within the same reach, but forest communities are now arranged in accordance with new flood regimes in place after river incision. Forest responses to subtle geomorphic change are slower than other vegetation communities, so detection of the full ramifications of ecohydrologic change may require decades.

Quantitative X-ray Map Analyser (Q-XRMA): A new GIS-based statistical approach to Mineral Image Analysis

NASA Astrophysics Data System (ADS)

Ortolano, Gaetano; Visalli, Roberto; Godard, Gaston; Cirrincione, Rosolino

2018-06-01

We present a new ArcGIS®-based tool developed in the Python programming language for calibrating EDS/WDS X-ray element maps, with the aim of acquiring quantitative information of petrological interest. The calibration procedure is based on a multiple linear regression technique that takes into account interdependence among elements and is constrained by the stoichiometry of minerals. The procedure requires an appropriate number of spot analyses for use as internal standards and provides several test indexes for a rapid check of calibration accuracy. The code is based on an earlier image-processing tool designed primarily for classifying minerals in X-ray element maps; the original Python code has now been enhanced to yield calibrated maps of mineral end-members or the chemical parameters of each classified mineral. The semi-automated procedure can be used to extract a dataset that is automatically stored within queryable tables. As a case study, the software was applied to an amphibolite-facies garnet-bearing micaschist. The calibrated images obtained for both anhydrous (i.e., garnet and plagioclase) and hydrous (i.e., biotite) phases show a good fit with corresponding electron microprobe analyses. This new GIS-based tool package can thus find useful application in petrology and materials science research. Moreover, the huge quantity of data extracted opens new opportunities for the development of a thin-section microchemical database that, using a GIS platform, can be linked with other major global geoscience databases.

Joint analyses of open comments and quantitative data: Added value in a job satisfaction survey of hospital professionals.

PubMed

Gilles, Ingrid; Mayer, Mauro; Courvoisier, Nelly; Peytremann-Bridevaux, Isabelle

2017-01-01

To obtain a comprehensive understanding of the job opinions of hospital professionals by conducting qualitative analyses of the open comments included in a job satisfaction survey and combining these results with the quantitative results. A cross-sectional survey targeting all Lausanne University Hospital professionals was performed in the fall of 2013. The survey considered ten job satisfaction dimensions (e.g. self-fulfilment, workload, management, work-related burnout, organisational commitment, intent to stay) and included an open comment section. Computer-assisted qualitative analyses were conducted on these comments. Satisfaction rates on the included dimensions and professional groups were entered as predictive variables in the qualitative analyses. Of 10 838 hospital professionals, 4978 participated in the survey and 1067 provided open comments. Data from 1045 respondents with usable comments constituted the analytic sample (133 physicians, 393 nurses, 135 laboratory technicians, 247 administrative staff, including researchers, 67 logistic staff, 44 psycho-social workers, and 26 unspecified). Almost a third of the comments addressed scheduling issues, mostly related to problems and exhaustion linked to shifts, work-life balance, and difficulties with colleagues' absences and the consequences for quality of care and patient safety. The other two-thirds related to classic themes included in job satisfaction surveys. Although some comments were provided equally by all professional groups, others were group specific: work and hierarchy pressures for physicians, healthcare quality and patient safety for nurses, skill recognition for administrative staff. Overall, respondents' comments were consistent with their job satisfaction ratings. Open comment analysis provides a comprehensive understanding of hospital professionals' job experiences, allowing better consideration of quality initiatives that match the needs of professionals with reality.

Transfer of fallout radionuclides derived from Fukushima NPP accident: 1 year study on transfer of radionuclides through geomorphic processes

NASA Astrophysics Data System (ADS)

Onda, Y.; Kato, H.; Fukushima, T.; Wakahara, T.; Kita, K.; Takahashi, Y.; Sakaguchi, A.; Tanaka, K.; Yamashiki, Y.; Yoshida, N.

2012-12-01

After the Fukushima Daiichi Nuclear Power Plant acciden, fallout radionuclides on the ground surface will transfer through geomorphic processes. Therefore, in order to estimate future changes in radionuclide deposition, migration process of radionuclides in forests, soils, ground water, rivers, and entrainment from trees and soils should be confirmed. We (FMWSE group) was funded by MEXT, Japanese government, and 1 year following monitoring has been conducted about 1 year. 1 Migration study of radionuclides in natural environment including forests and rivers 1) Study on depth distribution of radiocaesium in soils within forests, fields, and grassland. 2) Confirmation of radionuclide distribution and investigation on migration in forests. 3) Study on radionuclide migration due to soil erosion under different land use. 4) Measurement of radionuclides entrained from natural environment including forests and soils. 2 Migration study of radionuclides through hydrological cycle such as soil water, rivers, lakes and ponds, ground water. 1) Investigation on radionuclide migration through soil water, ground water, stream water, spring water under different land use. 2) Study on paddy-to-river transfer of radionuclides through suspended sediment. 3) Study on river-to-ocean transfer of radionuclides via suspended sediment. 4) Confirmation of radionuclide deposition in ponds and reservoirs. We will present how and where the fallout radionulides transfter through geomorphic processes.

Geomorphic Assessment of the Brazos River, Texas

NASA Astrophysics Data System (ADS)

Hamilton, P.; May, D.; Haring, C.

2017-12-01

The Brazos River is a large lowland river that traverses Texas before reaching the Gulf of Mexico. Of particular interest is the Brazos River reach through Fort Bend County, TX. This area is rapidly developing and as such there are concerns regarding infrastructure near the river. Rivers maintain a state of dynamic equilibrium wherein the system makes adjustments to external perturbations. This is of no concern in the abstract; the boundary conditions for the river change and the river adjusts to accommodate the change. However, because of development near the river, natural river adjustment can have catastrophic consequences. For example, bank failure along the Brazos River in Fort Bend County threatens SH 99, a major hurricane evacuation route, as well as flood control levees and county offices. Herein we present the results of hydraulic modeling conducted through the project area as well as the results of a geomorphic assessment. The Brazos River has a regional degradational trend throughout the project area in conjunction with subtly increasing sinuosity. Additionally, headcutting has greatly widened many of the tributary valleys and increased the local sediment supply to the river. Bank failure is an issue at several locations and there have been various solutions proposed for different sites. Part of the fear in addressing issues at a particular site is that money will be spent curing the symptoms along the river without confronting the underlying regional illness. Here we show some of the regional issues and how it they potentially interact with local solutions.

A New Material Mapping Procedure for Quantitative Computed Tomography-Based, Continuum Finite Element Analyses of the Vertebra

PubMed Central

Unnikrishnan, Ginu U.; Morgan, Elise F.

2011-01-01

Inaccuracies in the estimation of material properties and errors in the assignment of these properties into finite element models limit the reliability, accuracy, and precision of quantitative computed tomography (QCT)-based finite element analyses of the vertebra. In this work, a new mesh-independent, material mapping procedure was developed to improve the quality of predictions of vertebral mechanical behavior from QCT-based finite element models. In this procedure, an intermediate step, called the material block model, was introduced to determine the distribution of material properties based on bone mineral density, and these properties were then mapped onto the finite element mesh. A sensitivity study was first conducted on a calibration phantom to understand the influence of the size of the material blocks on the computed bone mineral density. It was observed that varying the material block size produced only marginal changes in the predictions of mineral density. Finite element (FE) analyses were then conducted on a square column-shaped region of the vertebra and also on the entire vertebra in order to study the effect of material block size on the FE-derived outcomes. The predicted values of stiffness for the column and the vertebra decreased with decreasing block size. When these results were compared to those of a mesh convergence analysis, it was found that the influence of element size on vertebral stiffness was less than that of the material block size. This mapping procedure allows the material properties in a finite element study to be determined based on the block size required for an accurate representation of the material field, while the size of the finite elements can be selected independently and based on the required numerical accuracy of the finite element solution. The mesh-independent, material mapping procedure developed in this study could be particularly helpful in improving the accuracy of finite element analyses of

Linking Soil Moisture Variation and Abundance of Plants to Geomorphic Processes: A Generalized Model for Erosion-Uplifting Landscapes

NASA Astrophysics Data System (ADS)

Ding, Junyan; Johnson, Edward A.; Martin, Yvonne E.

2018-03-01

The diffusive and advective erosion-created landscapes have similar structure (hillslopes and channels) across different scales regardless of variations in drivers and controls. The relative magnitude of diffusive erosion to advective erosion (D/K ratio) in a landscape development model controls hillslope length, shape, and drainage density, which regulate soil moisture variation, one of the critical resources of plants, through the contributing area (A) and local slope (S) represented by a topographic index (TI). Here we explore the theoretical relation between geomorphic processes, TI, and the abundance and distribution of plants. We derived an analytical model that expresses the TI with D, K, and A. This gives us the relation between soil moisture variation and geomorphic processes. Plant tolerance curves are used to link plant performance to soil moisture. Using the hypothetical tolerance curves of three plants, we show that the abundance and distribution of xeric, mesic, and hydric plants on the landscape are regulated by the D/K ratio. Where diffusive erosion is the major erosion process (large D/K ratio), mesic plants have higher abundance relative to xeric and hydric plants and the landscape has longer and convex-upward hillslope and low channel density. Increasing the dominance of advective erosion increases relative abundance of xeric and hydric plants dominance, and the landscape has short and concave hillslope and high channel density.

Geomorphic Response to Spatial and Temporal Tectonic uplift on the Kenya Rift of East African Rift System

NASA Astrophysics Data System (ADS)

Xue, L.; Abdelsalam, M. G.

2017-12-01

Tectonic uplifts of the shoulders of the East Africa Rift System (EARS) have significant impact on the geological record by reorganizing drainage systems, increasing sediment supply, and changing climate and biogeography. Recent studies in geochronology, geomorphology and geophysics have provided some understanding of the timing of tectonic uplift and its distribution pattern of the (EARS). We do not know how the vertical motion is localized along the rift axis and the relative roles of upwelling of magma and rift extensional processes play in tectonic uplift history. This work presents detailed morphometric study of the fluvial landscape response to the tectonic uplift and climate shifting of the Kenya Rift shoulders in order to reconstruct their incision history, with special attention to timing, location, and intensity of uplift episodes. This work compiles the Shuttle Radar Topography Mission (SRTM) Digital Elevation Model (DEM) and Sentinel-2A data, summarized previous 39Ar-40Ar and thermochronology data, and calculates long-term incision rate and geomorphic proxies (normalized steepness and chi-integral) along the Kenya Rift. It also models the age of tectonic/climatic events by using knickpoint celerity model and R/SR integrative approach. It found that the maximum long-term incision rates of 300 mm/kyr to be at the central Kenya Rift, possibly related to the mantle-driven process and rapid tectonic uplift. The geomorphic proxies indicate southward decreasing pattern of the short-term incision rate, possibly related to the migration of the mantle plume.

Geomorphic and geologic controls of geohazards induced by Nepal’s 2015 Gorkha earthquake

USGS Publications Warehouse

Kargel, J.S.; Leonard, G.J.; Shugar, D. H.; Haritashya, U. K.; Bevington, A.; Fielding, E.J.; Fujita, K.; Geertsema, M.; Miles, E. S.; Steiner, J.; Anderson, E.; Bajracharya, S.; Bawden, G.W.; Breashears, D. F.; Byers, A.; Collins, B.; Dhital, M. R.; Donnellan, A.; Evans, T. L.; Geai, M. L.; Glasscoe, M. T.; Green, D.; Gurung, D. R.; Heijenk, R.; Hilborn, A.; Hudnut, K.; Huyck, C.; Immerzeel, W. W.; Liming, Jiang; Jibson, R.; Kaab, A.; Khanal, N. R.; Kirschbaum, D.; Kraaijenbrink, P. D. A.; Lamsal, D.; Shiyin, Liu; Mingyang, Lv; McKinney, D.; Nahirnick, N. K.; Zhuotong, Nan; Ojha, S.; Olsenholler, J.; Painter, T.H.; Pleasants, M.; Pratima, K. C.; Yuan, Q. I.; Raup, B.H.; Regmi, D.; Rounce, D. R.; Sakai, A.; Donghui, Shangguan; Shea, J. M.; Shrestha, A. B.; Shukla, A.; Stumm, D.; van der Kooij, M.; Voss, K.; Xin, Wang; Weihs, B.; Lizong, Wu; Xiaojun, Yao; Yoder, M. R.; Young, N.

2016-01-01

The Gorkha earthquake (magnitude 7.8) on 25 April 2015 and later aftershocks struck South Asia, killing ~9000 people and damaging a large region. Supported by a large campaign of responsive satellite data acquisitions over the earthquake disaster zone, our team undertook a satellite image survey of the earthquakes’ induced geohazards in Nepal and China and an assessment of the geomorphic, tectonic, and lithologic controls on quake-induced landslides. Timely analysis and communication aided response and recovery and informed decision-makers. We mapped 4312 coseismic and postseismic landslides. We also surveyed 491 glacier lakes for earthquake damage but found only nine landslide-impacted lakes and no visible satellite evidence of outbursts. Landslide densities correlate with slope, peak ground acceleration, surface downdrop, and specific metamorphic lithologies and large plutonic intrusions.

Reclamation Strategies and Geomorphic Outcomes in Coal Surface Mines of Eastern Ohio

NASA Astrophysics Data System (ADS)

Pollock, M.; Jaeger, K. L.

2014-12-01

Coal surface mining is a significant landscape disturbance in the United States. Since 1977, the reclamation of mined lands has been regulated by the Surface Mine Control and Reclamation Act (SMCRA). Prior to the act, many coalfields were left un-reclaimed or partially reclaimed, with highly irregular topology and drainage networks. Under the act, the reverse is often true; adherence to SMCRA often leads to the homogenization of surfaces and channel networks. While both pre and post-SMCRA landscapes are highly altered, they exhibit strongly dissimilar characteristics. We examine pre-SMCRA, post-SMCRA and unmined watersheds at 3 spatial scales in order to compare the geomorphic differences between reclamation strategies. In particular, we attempt to separate anthropogenic factors from pre-existing, natural factors via comparisons to unmined watersheds. Our study design incorporates a 3 scale top-down analysis of 21 independent watersheds (7 of each treatment type). Each watershed has an area of approximately 1km2. All watersheds share similar geography, climate and geology. At the landscape scale, characteristics are derived from 0.762m (2.5ft) resolution Digital Elevation Models (DEMs). At the channel network scale, DEMs, as well as remote sensing data (including the National Wetlands Inventory database) are used. Finally, the reach scale incorporates longitudinal and cross-section surveys (using a total station) as well as a particle size distribution. At each scale, attributes are parameterized for statistical comparison. Post-SMCRA sites are characterized by a general reduction of watershed surface slopes (11.9% median) compared to pre-SMCRA (19.3%) and unmined (19.8%) sites. Both pre and post-SMCRA channel networks are characterized by significant surface impoundments (in the form of remnant headwall trenches on pre-SMCRA sites and engineered retention basins on post-SMCRA sites). Pre-SMCRA outlet reaches have significantly steeper bed slopes (2.79% mean) than

GEOMORPHIC AND HYDROLOGIC INTERACTIONS IN THE DETERMINATION OF EQUILIBRIUM SOIL DEPTH

NASA Astrophysics Data System (ADS)

Nicotina, L.; Rinaldo, A.; Tarboton, D. G.

2009-12-01

In this work we propose numerical studies of the interactions between hydrology and geomorphology in the formation of the actual soil depth that drives ecologic and hydrologic processes. Sediment transport and geomorphic landscape evolution processes (i.e. erosion/deposition vs. soil production) strongly influence hydrology, carbon sequestration, soil formation and stream water chemistry. The process of rock conversion into soil originates a strong hydrologic control through the formation of the soil depth that participates to hydrologic processes, influence vegetation type and patterns and actively participate in the co-evolution mechanisms that shape the landscape. The description of spatial patterns in hydrology is usually constrained by the availability of field data, especially when dealing with quantities that are not easily measurable. In these circumstances it is deemed fundamental the capability of deriving hydrologic boundary conditions from physically based approaches. Here we aim, in a general framework, at the formulation of an integrated approach for the prediction of soil depth by mean of i) soil production models and ii) geomorphic transport laws. The processes that take place in the critical zone are driven by the extension of it and have foundamental importance over short time scales as well as on geologic time scales (i.e. as biota affects climate that drives hydrology and thus contributes on shaping the landscape). Our study aims at the investigation of the relationships between soil depth, topography and runoff production, we also address the mechanisms that bring to the development of actual patterns of soil depths which at the same time influence runoff. We use a schematic representation of the hydrologic processes that relies on the description of the topography (throuh a topographic wetness index) and the spatially variable soil depths. Such a model is applied in order to investigate the development of equilibrium soil depth patterns under

Quantitative aspects of inductively coupled plasma mass spectrometry

NASA Astrophysics Data System (ADS)

Bulska, Ewa; Wagner, Barbara

2016-10-01

Accurate determination of elements in various kinds of samples is essential for many areas, including environmental science, medicine, as well as industry. Inductively coupled plasma mass spectrometry (ICP-MS) is a powerful tool enabling multi-elemental analysis of numerous matrices with high sensitivity and good precision. Various calibration approaches can be used to perform accurate quantitative measurements by ICP-MS. They include the use of pure standards, matrix-matched standards, or relevant certified reference materials, assuring traceability of the reported results. This review critically evaluates the advantages and limitations of different calibration approaches, which are used in quantitative analyses by ICP-MS. Examples of such analyses are provided. This article is part of the themed issue 'Quantitative mass spectrometry'.

Geomorphic change caused by outburst floods and debris flows at Mount Rainier, Washington, with emphasis on Tahoma Creek valley

USGS Publications Warehouse

Walder, J.S.; Driedger, C.L.

1994-01-01

Debris flows have caused rapid geomorphic change in several glacierized drainages on Mount Rainier, Washington. Nearly all of these flows began as glacial outburst floods, then transformed to debris flows by incorporating large masses of sediment in channel reaches where streams have incised proglacial sediments and stagnant glacier ice. This stagnant ice is a relic of advanced glacier positions achieved during the mid-nineteenth century Little Ice Age maximum and the readvance of the 1960's and 1970's. Debris flows have been especially important agents of geomorphic change along Tahoma Creek, which drains South Tahoma Glacier. Debris flows in Tahoma Creek valley have transported downstream about 107 m3 Of sediment since 1967, causing substantial aggradation and damage to roads and facilities in Mount Rainier National Park. The average denudation rate in the upper part of the Tahoma Creek drainage basin in the same period has been extraordinarily high: more than 20 millimeters per year, a value exceeded only rarely in basins affected by debris flows. However, little or none of this sediment has yet passed out of the Tahoma Creek drainage basin. Outburst floods from South Tahoma Glacier form by release of subglacially stored water. The volume of stored water discharged during a typical outburst flood would form a layer several tens of millimeters thick over the bed of the entire glacier, though it is more likely that large linked cavities account for most of the storage. Statistical analysis shows that outburst floods usually occur during periods of atypically hot or rainy weather in summer or early autumn, and that the probability of an outburst increases with temperature (a proxy measure of ablation rate) or rainfall rate. On the basis of these results, we suggest that outburst floods are triggered when rapid input of water to the glacier bed causes transient increase in water pressure, thereby destabilizing the linked-cavity system. The probabilistic nature of

Multidimensional quantitative analysis of mRNA expression within intact vertebrate embryos.

PubMed

Trivedi, Vikas; Choi, Harry M T; Fraser, Scott E; Pierce, Niles A

2018-01-08

For decades, in situ hybridization methods have been essential tools for studies of vertebrate development and disease, as they enable qualitative analyses of mRNA expression in an anatomical context. Quantitative mRNA analyses typically sacrifice the anatomy, relying on embryo microdissection, dissociation, cell sorting and/or homogenization. Here, we eliminate the trade-off between quantitation and anatomical context, using quantitative in situ hybridization chain reaction (qHCR) to perform accurate and precise relative quantitation of mRNA expression with subcellular resolution within whole-mount vertebrate embryos. Gene expression can be queried in two directions: read-out from anatomical space to expression space reveals co-expression relationships in selected regions of the specimen; conversely, read-in from multidimensional expression space to anatomical space reveals those anatomical locations in which selected gene co-expression relationships occur. As we demonstrate by examining gene circuits underlying somitogenesis, quantitative read-out and read-in analyses provide the strengths of flow cytometry expression analyses, but by preserving subcellular anatomical context, they enable bi-directional queries that open a new era for in situ hybridization. © 2018. Published by The Company of Biologists Ltd.

Using Inequality Measures to Incorporate Environmental Justice into Regulatory Analyses

EPA Science Inventory

Abstract: Formally evaluating how specific policy measures influence environmental justice is challenging, especially in the context of regulatory analyses in which quantitative comparisons are the norm. However, there is a large literature on developing and applying quantitative...

Geomorphic changes induced by the April-May 2015 earthquake sequence in the Pharak-Khumbu area (Nepal): preliminary assessments.

NASA Astrophysics Data System (ADS)

Fort, Monique

2016-04-01

Landsliding is a common process shaping mountain slopes. There are various potential landslide triggers (rainfall, bank erosion, earthquakes) and their effectiveness depends on their distribution, frequency and magnitude. In a Himalayan context, the effects of monsoon rainfall can be assessed every year whereas the unpredictability and low frequency of large earthquakes make their role in triggering slope instability more obscure. A 7.8 magnitude earthquake struck central Nepal (Gorkha District) on 25 April 2015 and was followed by many aftershocks exceeding magnitude 5, including another strong 7.3 magnitude earthquake on May 12, 2015 (Dolakha District). This seismic crisis provides an exceptional opportunity to assess the disruptions that earthquakes may cause in "regular" geomorphic systems controlled by rainfall. Here we present field observations carried out in the Pharak-Khumbu area (East Nepal, Dudh Kosi catchment) before and after the April-May 2015 earthquakes. The Pharak, a "middle mountains" (2000-4500 m) area, is affected by monsoon rains (3000 m/yr at 2500 m) and characterised by steep hillslopes, shaped by different geomorphic processes according to slope height and aspect, rock type and strength, inherited landforms, stream connectivity and current land use changes. This study focuses on the south of Lukla (Phakding District), and more specifically on the Khari Khola catchment and its surroundings. The area lies at the transition between the Higher Himalayan crystallines and the Lesser Himalayan meta-sediments. On the basis of our diachronic observations (March and November 2015), we surveyed and mapped new earthquake-induced slope instabilities such as rock falls, rockslides, landslides and debris flows and a combination of several of them. Interviews with local people also helped to assess the exact timing of some events. While the first M 7.8 earthquake produced significant impacts in the northern Khumbu area, the M 7.3 aftershock seems to have

Developing a geomorphic approach for ranking watersheds for rehabilitation, Zuni Indian Reservation, New Mexico

USGS Publications Warehouse

Gellis, A.C.; Cheama, A.; Lalio, S.M.

2001-01-01

As a result of past erosion problems on the Zuni Indian Reservation in western New Mexico, the US Congress in 1990 authorized the Zuni Tribe to begin a program for watershed rehabilitation. This paper describes an approach to rank the most appropriate watersheds for rehabilitation for the Zuni Reservation. The approach was based on data collected during a 3-year study on geomorphic and anthropogenic characteristics of the Rio Nutria Watershed, including data on (i) arroyo cross-sectional changes, (ii) erosion-control structures, and (iii) sheetwash erosion. Results of this 3-year study indicated that 61 of 85 channel cross-sections aggraded and channels with lower width-to-depth ratios eroded. Results on assessment of erosion-control structures, some dating back to the 1930's, indicated that 60% of earthen dams and 22% of rock-and-brush structures were breached or flanked in the Rio Nutria Watershed. Sheetwash erosion measured on five land-cover sites (sagebrush, pasture, chained pin??on and juniper, unchained pin??on and juniper, and ponderosa pine) indicated chained pin??on and juniper sites and pasture sites had the highest volume-weighted sediment concentrations of 13,000 and 9970 ppm, respectively. Based on interpretations of the 3-year study in the Rio Nutria Watershed, a two-stage approach was developed to rank the most appropriate watersheds for rehabilitation on the Zuni Reservation. In the first stage, the reservation was divided into eight major watersheds, which were ranked according to the most potential for erosion. In the second stage, the watershed with the most potential for erosion was divided into sub-basins, which were ranked according to the most potential for erosion. Quantitative and qualitative information on physical and anthropogenic factors were used at each stage to rank the watersheds. Quantitative physical data included headcut density, percentage of bare ground, percentage of chained area, channel width-to-depth ratio, change in

Joint analyses of open comments and quantitative data: Added value in a job satisfaction survey of hospital professionals

PubMed Central

Gilles, Ingrid; Mayer, Mauro; Courvoisier, Nelly; Peytremann-Bridevaux, Isabelle

2017-01-01

Objective To obtain a comprehensive understanding of the job opinions of hospital professionals by conducting qualitative analyses of the open comments included in a job satisfaction survey and combining these results with the quantitative results. Design A cross-sectional survey targeting all Lausanne University Hospital professionals was performed in the fall of 2013. Material and methods The survey considered ten job satisfaction dimensions (e.g. self-fulfilment, workload, management, work-related burnout, organisational commitment, intent to stay) and included an open comment section. Computer-assisted qualitative analyses were conducted on these comments. Satisfaction rates on the included dimensions and professional groups were entered as predictive variables in the qualitative analyses. Participants Of 10 838 hospital professionals, 4978 participated in the survey and 1067 provided open comments. Data from 1045 respondents with usable comments constituted the analytic sample (133 physicians, 393 nurses, 135 laboratory technicians, 247 administrative staff, including researchers, 67 logistic staff, 44 psycho-social workers, and 26 unspecified). Results Almost a third of the comments addressed scheduling issues, mostly related to problems and exhaustion linked to shifts, work-life balance, and difficulties with colleagues’ absences and the consequences for quality of care and patient safety. The other two-thirds related to classic themes included in job satisfaction surveys. Although some comments were provided equally by all professional groups, others were group specific: work and hierarchy pressures for physicians, healthcare quality and patient safety for nurses, skill recognition for administrative staff. Overall, respondents’ comments were consistent with their job satisfaction ratings. Conclusion Open comment analysis provides a comprehensive understanding of hospital professionals’ job experiences, allowing better consideration of quality

Quantitative DNA Analyses for Airborne Birch Pollen

PubMed Central

Müller-Germann, Isabell; Vogel, Bernhard; Vogel, Heike; Pauling, Andreas; Fröhlich-Nowoisky, Janine; Pöschl, Ulrich; Després, Viviane R.

2015-01-01

Birch trees produce large amounts of highly allergenic pollen grains that are distributed by wind and impact human health by causing seasonal hay fever, pollen-related asthma, and other allergic diseases. Traditionally, pollen forecasts are based on conventional microscopic counting techniques that are labor-intensive and limited in the reliable identification of species. Molecular biological techniques provide an alternative approach that is less labor-intensive and enables identification of any species by its genetic fingerprint. A particularly promising method is quantitative Real-Time polymerase chain reaction (qPCR), which can be used to determine the number of DNA copies and thus pollen grains in air filter samples. During the birch pollination season in 2010 in Mainz, Germany, we collected air filter samples of fine (<3 μm) and coarse air particulate matter. These were analyzed by qPCR using two different primer pairs: one for a single-copy gene (BP8) and the other for a multi-copy gene (ITS). The BP8 gene was better suitable for reliable qPCR results, and the qPCR results obtained for coarse particulate matter were well correlated with the birch pollen forecasting results of the regional air quality model COSMO-ART. As expected due to the size of birch pollen grains (~23 μm), the concentration of DNA in fine particulate matter was lower than in the coarse particle fraction. For the ITS region the factor was 64, while for the single-copy gene BP8 only 51. The possible presence of so-called sub-pollen particles in the fine particle fraction is, however, interesting even in low concentrations. These particles are known to be highly allergenic, reach deep into airways and cause often severe health problems. In conclusion, the results of this exploratory study open up the possibility of predicting and quantifying the pollen concentration in the atmosphere more precisely in the future. PMID:26492534

Role Of Social Networks In Resilience Of Naval Recruits: A Quantitative Analysis

DTIC Science & Technology

2016-06-01

comprises 1,297 total surveys from a total of eight divisions of recruits at two different time periods. Quantitative analyses using surveys and network... surveys from a total of eight divisions of recruits at two different time periods. Quantitative analyses using surveys and network data examine the effects...NETWORKS IN RESILIENCE OF NAVAL RECRUITS: A QUANTITATIVE ANALYSIS by Andrea M. Watling June 2016 Thesis Advisor: Edward H. Powley Co

Simultaneous Qualitative and Quantitative Analyses of Triterpenoids in Ilex pubescens by Ultra-High-Performance Liquid Chromatography Coupled with Quadrupole Time-of-Flight Mass Spectrometry.

PubMed

Cao, Di; Wang, Qing; Jin, Jing; Qiu, Maosong; Zhou, Lian; Zhou, Xinghong; Li, Hui; Zhao, Zhongxiang

2018-03-01

Ilex pubescens Hook et Arn mainly contains triterpenoids that possess antithrombotic, anti-inflammatory and analgesic effects. Quantitative and qualitative analyses of the triterpenoids in I. pubescens can be useful for determining the authenticity and quality of raw materials and guiding its clinical preparation. To establish a method for rapid and comprehensive analysis of triterpenoids in I. pubescens using ultra-high-performance liquid chromatography coupled to electrospray ionisation and quadrupole time-of-flight-mass spectrometry (UPLC-ESI-QTOF-MS), which will also be applied to evaluate the contents of nine triterpenoids among root, root heartwood and root bark of I. pubescens to judge the value of the root bark to avoid wastage. UPLC-ESI-QTOF-MS data from the extracts of I. pubescens in negative mode were analysed using Peakview and Masterview software that provided molecular weight, mass errors, isotope pattern fit and MS/MS fragments for the identification of triterpenoids. The quantification of nine investigated compounds of I. pubescens was accomplished using MultiQuant software. A total of 33 triterpenoids, five phenolic acids, two lignans and a flavonol were characterised in only 14 min. The total content of the nine compounds in the root bark was generally slightly higher than that of the root and root heartwood, which has not been reported before. The developed UPLC-ESI-QTOF-MS method was proven to be rapid and comprehensive for simultaneous qualitative and quantitative analyses of the characteristic triterpenoids in I. pubescens. The results may provide a basis for holistic quality control and metabolic studies of I. pubescens, as well as serve as a reference for the analysis of other Ilex plants. Copyright © 2017 John Wiley & Sons, Ltd. Copyright © 2017 John Wiley & Sons, Ltd.

Quantitative aspects of inductively coupled plasma mass spectrometry

PubMed Central

Wagner, Barbara

2016-01-01

Accurate determination of elements in various kinds of samples is essential for many areas, including environmental science, medicine, as well as industry. Inductively coupled plasma mass spectrometry (ICP-MS) is a powerful tool enabling multi-elemental analysis of numerous matrices with high sensitivity and good precision. Various calibration approaches can be used to perform accurate quantitative measurements by ICP-MS. They include the use of pure standards, matrix-matched standards, or relevant certified reference materials, assuring traceability of the reported results. This review critically evaluates the advantages and limitations of different calibration approaches, which are used in quantitative analyses by ICP-MS. Examples of such analyses are provided. This article is part of the themed issue ‘Quantitative mass spectrometry’. PMID:27644971

Reconstructing the geomorphic history of Liang Bua, Flores, Indonesia: a stratigraphic interpretation of the occupational environment.

PubMed

Westaway, K E; Sutikna, T; Saptomo, W E; Jatmiko; Morwood, M J; Roberts, R G; Hobbs, D R

2009-11-01

Liang Bua, in Flores, Indonesia, was formed as a subterranean chamber over 600ka. From this time to the present, a series of geomorphic events influenced the structure of the cave and cave deposits, creating a complex stratigraphy. Within these deposits, nine main sedimentary units have been identified. The stratigraphic relationships between these units provide the evidence needed to reconstruct the geomorphic history of the cave. This history was dominated by water action, including slope wash processes, channel formation, pooling of water, and flowstone precipitation, which created waterfalls, cut-and-fill stratigraphy, large pools of water, and extensive flowstone cappings. The reconstructed sequence of events over the last 190k.yr. has been summarized by a series of time slices that demonstrate the nature of the occupational environment in Liang Bua. The earliest artifacts at the site, dated to approximately 190ka, testify to hominin presence in the area, but the reconstructions suggest that occupation of the cave itself may not have been possible until after approximately 100ka. At approximately 95ka, channel erosion of a basal unit, which displays evidence of deposition in a pond environment, created a greater relief on the cave floor, and formed remanent areas of higher ground that later became a focus for hominin occupation from 74-61ka by the west wall and in the center of the cave, and from approximately 18-17ka by the east wall. These zones have been identified according to the sloping nature of the stratigraphy and the distribution of artifacts, and their locations have implications for the archaeological interpretation of the site.

Identification of Suitable Water Harvesting Zones Based on Geomorphic Resources for Drought Areas: A Case Study of Una District, Himachal Pradesh, India.

NASA Astrophysics Data System (ADS)

Prakasam, D. C., Jr.; Zaman, B.

2014-12-01

Water is one of the most vital natural resource and its availability and quality determine ecosystem productivity, both for agricultural and natural systems. Una district is one of the major potential agricultural districts in Himachal Pradesh, India. More than 70% of the population of this district is engaged in agriculture and allied sectors and major crops grown are maize, wheat, rice, sugarcane, pulses and vegetables. The region faces drought every year and about 90 per cent of the area is water stressed. This has resulted in crop loss and shortage of food and fodder. The sources of drinking water, small ponds and bowlies dry-up during summer season resulting in scarcity of drinking water. Una district receives rainfall during monsoons from June to September and also during non-monsoon period (winter). The annual average rainfall in the area is about 1040 mm with 55 average rainy days. But due to heavy surface run-off the farmers not able to cultivate the crops more than once in a year. Past research indicate that the geomorphology of the Una district might be responsible for such droughts as it controls the surface as well as ground water resources. The research proposes to develop a water stress model for Una district using the geomorphic parameters, water resource and land use land cover data of the study area. Using Survey of India topographical maps (1:50000), the geomorphic parameters are extracted. The spatial layers of these parameters i.e. drainage density, slope, relative relief, ruggedness index, surface water body's frequency are created in GIS. A time series of normalized remotely sensed data of the study area is used for land use land cover classification and analyses. Based on the results from the water stress model, the drought/water stress areas and water harvesting zones are identified and documented. The results of this research will help the general population in resolving the drinking water problem to a certain extent and also the

Geomorphic clues to the Martian volatile inventory. 1: Flow ejecta blankets

NASA Technical Reports Server (NTRS)

Pieri, D.; Baloga, S.; Norris, M.

1984-01-01

There are classes of landforms whose presence on Mars is strongly suggestive, if not confirmatory, of the participation of volatiles, presumably water, in its geomorphic development: (1) valley networks, (2) outflow channels, (3) landslides, and (4) flow-ejecta blankets. The first two may represent landforms generated by the movement of volatiles from sources, while the latter two probably represent the dissipation of energy generated by forcing inputs (e.g., kinetic energy and gravity) modulated by volatiles. In many areas on Mars, all four processes have acted on the same lithologic materials and were influenced by the composition of those units, and possibility by the climatic regime at the time of their formation. One of the approaches discussed to this specific problem of landform genesis, and to the general problem of the present and past states of martian volatiles, is to attempt to constrain the distribution, amount, and history of available volatiles by using possible evidence of volatile participation expressed in the morphology of other related landforms (e.g., flow-ejecta blankets and landslides) coupled with physical models for landform genesis.

Geomorphic clues to the Martian volatile inventory. 1: Flow ejecta blankets

NASA Astrophysics Data System (ADS)

Pieri, D.; Baloga, S.; Norris, M.

1984-04-01

There are classes of landforms whose presence on Mars is strongly suggestive, if not confirmatory, of the participation of volatiles, presumably water, in its geomorphic development: (1) valley networks, (2) outflow channels, (3) landslides, and (4) flow-ejecta blankets. The first two may represent landforms generated by the movement of volatiles from sources, while the latter two probably represent the dissipation of energy generated by forcing inputs (e.g., kinetic energy and gravity) modulated by volatiles. In many areas on Mars, all four processes have acted on the same lithologic materials and were influenced by the composition of those units, and possibility by the climatic regime at the time of their formation. One of the approaches discussed to this specific problem of landform genesis, and to the general problem of the present and past states of martian volatiles, is to attempt to constrain the distribution, amount, and history of available volatiles by using possible evidence of volatile participation expressed in the morphology of other related landforms (e.g., flow-ejecta blankets and landslides) coupled with physical models for landform genesis.

Linear Quantitative Profiling Method Fast Monitors Alkaloids of Sophora Flavescens That Was Verified by Tri-Marker Analyses.

PubMed

Hou, Zhifei; Sun, Guoxiang; Guo, Yong

2016-01-01

The present study demonstrated the use of the Linear Quantitative Profiling Method (LQPM) to evaluate the quality of Alkaloids of Sophora flavescens (ASF) based on chromatographic fingerprints in an accurate, economical and fast way. Both linear qualitative and quantitative similarities were calculated in order to monitor the consistency of the samples. The results indicate that the linear qualitative similarity (LQLS) is not sufficiently discriminating due to the predominant presence of three alkaloid compounds (matrine, sophoridine and oxymatrine) in the test samples; however, the linear quantitative similarity (LQTS) was shown to be able to obviously identify the samples based on the difference in the quantitative content of all the chemical components. In addition, the fingerprint analysis was also supported by the quantitative analysis of three marker compounds. The LQTS was found to be highly correlated to the contents of the marker compounds, indicating that quantitative analysis of the marker compounds may be substituted with the LQPM based on the chromatographic fingerprints for the purpose of quantifying all chemicals of a complex sample system. Furthermore, once reference fingerprint (RFP) developed from a standard preparation in an immediate detection way and the composition similarities calculated out, LQPM could employ the classical mathematical model to effectively quantify the multiple components of ASF samples without any chemical standard.

Linear Quantitative Profiling Method Fast Monitors Alkaloids of Sophora Flavescens That Was Verified by Tri-Marker Analyses

PubMed Central

Hou, Zhifei; Sun, Guoxiang; Guo, Yong

2016-01-01

The present study demonstrated the use of the Linear Quantitative Profiling Method (LQPM) to evaluate the quality of Alkaloids of Sophora flavescens (ASF) based on chromatographic fingerprints in an accurate, economical and fast way. Both linear qualitative and quantitative similarities were calculated in order to monitor the consistency of the samples. The results indicate that the linear qualitative similarity (LQLS) is not sufficiently discriminating due to the predominant presence of three alkaloid compounds (matrine, sophoridine and oxymatrine) in the test samples; however, the linear quantitative similarity (LQTS) was shown to be able to obviously identify the samples based on the difference in the quantitative content of all the chemical components. In addition, the fingerprint analysis was also supported by the quantitative analysis of three marker compounds. The LQTS was found to be highly correlated to the contents of the marker compounds, indicating that quantitative analysis of the marker compounds may be substituted with the LQPM based on the chromatographic fingerprints for the purpose of quantifying all chemicals of a complex sample system. Furthermore, once reference fingerprint (RFP) developed from a standard preparation in an immediate detection way and the composition similarities calculated out, LQPM could employ the classical mathematical model to effectively quantify the multiple components of ASF samples without any chemical standard. PMID:27529425

Leadership and Culture-Building in Schools: Quantitative and Qualitative Understandings.

ERIC Educational Resources Information Center

Sashkin, Marshall; Sashkin, Molly G.

Understanding effective school leadership as a function of culture building through quantitative and qualitative analyses is the purpose of this paper. The two-part quantitative phase of the research focused on statistical measures of culture and leadership behavior directed toward culture building in the school. The first quantitative part…

Geomorphic Implications of Fire and Slope Aspect in the Jemez Mountains, New Mexico, USA

NASA Astrophysics Data System (ADS)

Fitch, E. P.; Meyer, G. A.

2011-12-01

Following a fire, extensive erosion may occur on hillslopes due to reduced infiltration and increased runoff as well as a decrease in vegetative anchoring and surface roughness. This increased erosion and subsequent sedimentation on alluvial fans at the base of the hillslope may be the primary process of geomorphic change in fire-prone mountains in the Western US. Insolation differences on north and south facing slopes may also be another potential influence on geomorphic change due to soil moisture and vegetation differences, which may affect the spatial distribution of erosion as well as sediment transport processes. Due to the long recovery period of forest stands in fire-prone areas, it is important to understand the natural variability of erosion for the purposes of forest and river ecology and management as well as mass movement-flooding hazard. The 2002 Lakes Fire area in the Jemez Mountains, NM, provides a natural study area with incision of alluvial fans after the Lakes Fire exposing the internal structure of these fans. The study area displays steeper, drier ponderosa pine dominated south-facing slopes and less steep, moister Douglas-fir dominated north-facing slopes, which suggests that slope aspect may influence fire regime and post-fire erosion in the Jemez Mountains. In order to determine the importance of fire and aspect on erosion and sedimentation, over 15 sections within alluvial fans with both north and south aspect were studied. Debris flow, hyperconcentrated flow and stream flow make up the majority of sediment transport processes in this area. Therefore, deposits formed by these processes were described, and evidence for fire-related sedimentation was assessed. Additionally, the relative importance of sediment transport types in relation to north versus south slope aspects was examined. Finally, charcoal fragments within deposits from north and south aspects were analyzed in terms of their abundance and angularity in order to aid in estimating

Mapping geomorphic process domains to predict hillslope sediment size distribution using remotely-sensed data and field sampling, Inyo Creek, California

NASA Astrophysics Data System (ADS)

Leclere, S.; Sklar, L. S.; Genetti, J. R.

2014-12-01

The size distribution of sediments produced on hillslopes and supplied to channels depends on the geomorphic processes that weather, detach and transport rock fragments down slopes. Little in the way of theory or data is available to predict patterns in hillslope size distributions at the catchment scale from topographic and geologic maps. Here we use aerial imagery and a variety of remote sensing techniques to map and categorize geomorphic landscape units (GLUs) by inferred sediment production process regime, across the steep mountain catchment of Inyo Creek, eastern Sierra Nevada, California. We also use field measurements of particle size and local geomorphic attributes to test and refine GLU determinations. Across the 2 km of relief in this catchment, landcover varies from bare bedrock cliffs at higher elevations to vegetated, regolith-covered convex slopes at lower elevations. Hillslope gradient could provide a simple index of sediment production process, from rock spallation and landsliding at highest slopes, to tree-throw and other disturbance-driven soil production processes at lowest slopes. However, many other attributes are needed for a more robust predictive model, including elevation, curvature, aspect, drainage area, and color. We combine tools from ArcGIS, ERDAS Imagine and Envi with groundtruthing field work to find an optimal combination of attributes for defining sediment production GLUs. Key challenges include distinguishing: weathered from freshly eroded bedrock, boulders from intact bedrock, and landslide deposits from talus slopes. We take advantage of emerging technologies that provide new ways of conducting fieldwork and comparing field data to mapping solutions. In particular, cellphone GPS is approaching the accuracy of dedicated GPS systems and the ability to geo-reference photos simplifies field notes and increases accuracy of later map creation. However, the predictive power of the GLU mapping approach is limited by inherent uncertainty

Characterizing the transient geomorphic response to base level fall in the northeastern Tibetan Plateau

NASA Astrophysics Data System (ADS)

Zhang, H.; Zhang, P.; Kirby, E.; Pitlick, J.; Anderson, R. S.

2015-12-01

Analyses of hillslope gradient, landscape relief, and channel steepness in the Daxiahe drainage basin along the northeastern margin of the Tibetan Plateau provides evidence of a transient geomorphic response to base level fall along the main stem Yellow River. The upper portions of the watershed are characterized by low-gradient channels and gentle hillslopes and are separated from a steeper, high relief landscape by a series of convex knickzones along channel profiles. Downstream projection of the upper channel profiles implies ~500-600 m of incision, consistent with terrace records of post ~1.7 Ma incision in the Linxia basin. We characterize erosion rates across this transient landscape using both optically-stimulated dating of fluvial terraces and catchment-averaged 10Be concentrations in modern sediment. Both data sets are consistent and suggest erosion/incision rates of ~300 m/Myr below knickpoints and ~50-100 m/Myr above. Field measurements of channel width (n=48) and bankfull discharge (n=9) allow us to determine local scaling relations among channel hydraulic geometry, discharge, and contributing area that we employ to estimate basal shear stress, unit stream power and bedload transport along the main stem of the Daxiahe River. We find a clear downstream increase of incision potential across this transient landscape, consistent with topographic observations and erosion rates. In contrast to recent studies, we find no evidence for adjustment of channel width across the transition from slowly eroding to rapidly eroding portions of the watershed. We hypothesize that this behavior is consistent with detachment-limited models of fluvial incision, despite the presence of significant sediment in channel bed and banks. Our results imply that the controls on hydraulic geometry along actively incising rivers remain incompletely understood.

St. Louis Metro East region sediment and geomorphic study

USGS Publications Warehouse

Straub, T.D.; ,

2004-01-01

Judy's Branch, a small basin (8.64 mi2) near Glen Carbon, Illinois, is selected as a pilot site to determine sediment yield and channel erosion of streams draining the bluffs of the American Bottoms in the Metro East area of Illinois. This paper presents results of an on-going sediment and geomorphic study in Judy's Branch. The average suspended-sediment yield from two upland sub-basins (drainage area equals 0.23 and 0.40 miles2) is 851 tons/mile2-year between October 2000 and September 2003. The suspended-sediment yield at the Route 157 gage (2,188 tons/mile 2-year) (near outlet of the watershed; drainage area = 8.33 miles2) is approximately 1300 tons/mile2-year greater than the average of the upland gages for the same time period. This result is unexpected in that generally the suspended-sediment yield decreases as the watershed area increases because of sediment being stored in the channel and floodplain. The difference indicates a possible increase in yield from a source, such as streambank erosion, and supports the theory that land-use changes increase streamflows that may result in higher rates of streambank erosion. The best estimate of sediment yield from streambank erosion is 1,009 tons/mile 2-year at Route 157. This value is obtained utilizing both bank-rod data and resurveyed cross-section data.

Quantitative three-dimensional microtextural analyses of tooth wear as a tool for dietary discrimination in fishes

PubMed Central

Purnell, Mark; Seehausen, Ole; Galis, Frietson

2012-01-01

Resource polymorphisms and competition for resources are significant factors in speciation. Many examples come from fishes, and cichlids are of particular importance because of their role as model organisms at the interface of ecology, development, genetics and evolution. However, analysis of trophic resource use in fishes can be difficult and time-consuming, and for fossil fish species it is particularly problematic. Here, we present evidence from cichlids that analysis of tooth microwear based on high-resolution (sub-micrometre scale) three-dimensional data and new ISO standards for quantification of surface textures provides a powerful tool for dietary discrimination and investigation of trophic resource exploitation. Our results suggest that three-dimensional approaches to analysis offer significant advantages over two-dimensional operator-scored methods of microwear analysis, including applicability to rough tooth surfaces that lack distinct scratches and pits. Tooth microwear textures develop over a longer period of time than is represented by stomach contents, and analyses based on textures are less prone to biases introduced by opportunistic feeding. They are more sensitive to subtle dietary differences than isotopic analysis. Quantitative textural analysis of tooth microwear has a useful role to play, complementing existing approaches, in trophic analysis of fishes—both extant and extinct. PMID:22491979

Toward Quantitative Small Animal Pinhole SPECT: Assessment of Quantitation Accuracy Prior to Image Compensations

PubMed Central

Chen, Chia-Lin; Wang, Yuchuan; Lee, Jason J. S.; Tsui, Benjamin M. W.

2011-01-01

Purpose We assessed the quantitation accuracy of small animal pinhole single photon emission computed tomography (SPECT) under the current preclinical settings, where image compensations are not routinely applied. Procedures The effects of several common image-degrading factors and imaging parameters on quantitation accuracy were evaluated using Monte-Carlo simulation methods. Typical preclinical imaging configurations were modeled, and quantitative analyses were performed based on image reconstructions without compensating for attenuation, scatter, and limited system resolution. Results Using mouse-sized phantom studies as examples, attenuation effects alone degraded quantitation accuracy by up to −18% (Tc-99m or In-111) or −41% (I-125). The inclusion of scatter effects changed the above numbers to −12% (Tc-99m or In-111) and −21% (I-125), respectively, indicating the significance of scatter in quantitative I-125 imaging. Region-of-interest (ROI) definitions have greater impacts on regional quantitation accuracy for small sphere sources as compared to attenuation and scatter effects. For the same ROI, SPECT acquisitions using pinhole apertures of different sizes could significantly affect the outcome, whereas the use of different radii-of-rotation yielded negligible differences in quantitation accuracy for the imaging configurations simulated. Conclusions We have systematically quantified the influence of several factors affecting the quantitation accuracy of small animal pinhole SPECT. In order to consistently achieve accurate quantitation within 5% of the truth, comprehensive image compensation methods are needed. PMID:19048346

Inference of Eco-geomorphic Processes Using Integrated Historical Data for a Rapidly Changing Mediterranean-climate River Corridor: Lower Santa Clara River, California

NASA Astrophysics Data System (ADS)

Beller, E. E.; Grossinger, R. M.; Downs, P. W.; Orr, B. K.

2010-12-01

Environmental conservation demands reach-specific data as the basis for place-based restoration and management measures. However, areas such as the lower Santa Clara River valley have been subject to intensive modification since the at least the nineteenth century, but without regular hydrogeomorphic or ecological monitoring (e.g., flow gauging, repeat topographic surveys, vegetation mapping) until the mid-twentieth century. This gap has limited data on former river corridor form and understanding of historical eco-geomorphic processes. The result is a lack of consensus about the range of potential riparian and aquatic habitats to consider as restoration targets, their appropriate relative distribution, and the relationship between such ecological targets and physical processes on the river, past and present. To address this data gap on the lower Santa Clara River, we initiated an effort to extend the documentation of river characteristics beyond readily available early data sets (such as aerial photography from 1927) by integrating historical cartographic, textual, and visual accounts to create a heterogeneous but substantial dataset describing hydrologic, geomorphic, and riparian characteristics back to 1769 - the date of the first non-native exploration of the region. We collected over 1,000 documents, including General Land Office survey data, early maps from the county surveyor, and traveler’s accounts of the region, evaluating each source for its accuracy and reliability. These data were synthesized to evaluate the location and composition of riparian areas that persisted despite substantial flood events and impacts of rapidly changing land use, and to determine aspects of the former hydrology of the river affecting riparian pattern that are still relevant today. The data also indicate the general resilience of mainstem channel form in response to these events in contrast to the present-day eco-geomorphic system, which is far more sensitive to change. Used

Elastic fibers in human skin: quantitation of elastic fibers by computerized digital image analyses and determination of elastin by radioimmunoassay of desmosine.

PubMed

Uitto, J; Paul, J L; Brockley, K; Pearce, R H; Clark, J G

1983-10-01

The elastic fibers in the skin and other organs can be affected in several disease processes. In this study, we have developed morphometric techniques that allow accurate quantitation of the elastic fibers in punch biopsy specimens of skin. In this procedure, the elastic fibers, visualized by elastin-specific stains, are examined through a camera unit attached to the microscope. The black and white images sensing various gray levels are then converted to binary images after selecting a threshold with an analog threshold selection device. The binary images are digitized and the data analyzed by a computer program designed to express the properties of the image, thus allowing determination of the volume fraction occupied by the elastic fibers. As an independent measure of the elastic fibers, alternate tissue sections were used for assay of desmosine, an elastin-specific cross-link compound, by a radioimmunoassay. The clinical applicability of the computerized morphometric analyses was tested by examining the elastic fibers in the skin of five patients with pseudoxanthoma elasticum or Buschke-Ollendorff syndrome. In the skin of 10 healthy control subjects, the elastic fibers occupied 2.1 +/- 1.1% (mean +/- SD) of the dermis. The volume fractions occupied by the elastic fibers in the lesions of pseudoxanthoma elasticum or Buschke-Ollendorff syndrome were increased as much as 6-fold, whereas the values in the unaffected areas of the skin in the same patients were within normal limits. A significant correlation between the volume fraction of elastic fibers, determined by computerized morphometric analyses, and the concentration of desmosine, quantitated by radioimmunoassay, was noted in the total material. These results demonstrate that computerized morphometric techniques are helpful in characterizing disease processes affecting skin. This methodology should also be applicable to other tissues that contain elastic fibers and that are affected in various heritable and

Geomorphic characterization of four shelf-sourced submarine canyons along the U.S. Mid-Atlantic continental margin

USGS Publications Warehouse

Obelcz, Jeffrey; Brothers, Daniel S.; Chaytor, Jason D.; ten Brink, Uri S.; Ross, Steve W.; Brooke, Sandra

2013-01-01

Shelf-sourced submarine canyons are common features of continental margins and are fundamental to deep-sea sedimentary systems. Despite their geomorphic and geologic significance, relatively few passive margin shelf-breaching canyons worldwide have been mapped using modern geophysical methods. Between 2007 and 2012 a series of geophysical surveys was conducted across four major canyons of the US Mid-Atlantic margin: Wilmington, Baltimore, Washington, and Norfolk canyons. More than 5700 km2 of high-resolution multibeam bathymetry and 890 line-km of sub-bottom CHIRP profiles were collected along the outer shelf and uppermost slope (depths of 80-1200 m). The data allowed us to compare and contrast the fine-scale morphology of each canyon system. The canyons have marked differences in the morphology and orientation of canyon heads, steepness and density of sidewall gullies, and the character of the continental shelf surrounding canyon rims. Down-canyon axial profiles for Washington, Baltimore and Wilmington canyons have linear shapes, and each canyon thalweg exhibits morphological evidence for recent, relatively small-scale sediment transport. For example, Washington Canyon displays extremely steep wall gradients and contains ~100 m wide, 5–10 m deep, v-shaped incisions down the canyon axis, suggesting modern or recent sediment transport. In contrast, the convex axial thalweg profile, the absence of thalweg incision, and evidence for sediment infilling at the canyon head, suggest that depositional processes strongly influence Norfolk Canyon during the current sea-level high-stand. The north walls of Wilmington, Washington and Norfolk canyons are steeper than the south walls due to differential erosion, though the underlying cause for this asymmetry is not clear. Furthermore, we speculate that most of the geomorphic features observed within the canyons (e.g., terraces, tributary canyons, gullies, and hanging valleys) were formed during the Pleistocene, and show only

Statistical and Conceptual Model Testing Geomorphic Principles through Quantification in the Middle Rio Grande River, NM.

NASA Astrophysics Data System (ADS)

Posner, A. J.

2017-12-01

The Middle Rio Grande River (MRG) traverses New Mexico from Cochiti to Elephant Butte reservoirs. Since the 1100s, cultivating and inhabiting the valley of this alluvial river has required various river training works. The mid-20th century saw a concerted effort to tame the river through channelization, Jetty Jacks, and dam construction. A challenge for river managers is to better understand the interactions between a river training works, dam construction, and the geomorphic adjustments of a desert river driven by spring snowmelt and summer thunderstorms carrying water and large sediment inputs from upstream and ephemeral tributaries. Due to its importance to the region, a vast wealth of data exists for conditions along the MRG. The investigation presented herein builds upon previous efforts by combining hydraulic model results, digitized planforms, and stream gage records in various statistical and conceptual models in order to test our understanding of this complex system. Spatially continuous variables were clipped by a set of river cross section data that is collected at decadal intervals since the early 1960s, creating a spatially homogenous database upon which various statistical testing was implemented. Conceptual models relate forcing variables and response variables to estimate river planform changes. The developed database, represents a unique opportunity to quantify and test geomorphic conceptual models in the unique characteristics of the MRG. The results of this investigation provides a spatially distributed characterization of planform variable changes, permitting managers to predict planform at a much higher resolution than previously available, and a better understanding of the relationship between flow regime and planform changes such as changes to longitudinal slope, sinuosity, and width. Lastly, data analysis and model interpretation led to the development of a new conceptual model for the impact of ephemeral tributaries in alluvial rivers.

Application of structure from motion to digitized historical airphotos to document geomorphic change over the past century

NASA Astrophysics Data System (ADS)

Roberti, Gioachino; Ward, Brent; van Wyk de Vries, Benjamin; Perotti, Luigi; Giardino, Marco; Friele, Pierre; Clague, John

2017-04-01

Topographic modeling is becoming more accessible due to the development of structure from motion (SFM), and multi-view stereo (MVS) image matching algorithms in digital photogrammetry. Many studies are utilizing SFM-MVS with either UAV or hand-held consumer-grade digital cameras. However, little work has been done in using SFM-MVS with digitized historical air photos. Large databases of historical airphotos are available in university, public, and government libraries, commonly as paper copies. In many instances, the photos are in poor condition (i.e. deformed by humidity, scratched, or annotated). In addition, the negatives, as well as metadata on the camera and the flight mission, may be missing. Processing such photos using classic stereo-photogrammetry is difficult and in many instances impossible. Yet these photos can provide a valuable archive of geomorphic changes. In this study, we digitized over 1000 vertical air photos of the Mount Meager massif (British Columbia, Canada), acquired during flights between 1947 and 2006. We processed the scans using the commercial SFM-MVS software package PhotoScan. PhotoScan provided high-quality orthophotos (0.42-1.13 m/pixel) and DTMs (1-5 m/pixel). We used the orthophotos to document glacier retreat and deep-seated gravitational deformation over the 60-year photo period. Notably, we reconstructed geomorphic changes that led to the very large (˜50 x 106 m 3) 2010 failure of the south flank of Meager Peak and also documented other unstable areas that might fail catastrophically in the future. This technique can be applied to other photosets to provide rapid high-quality cartographic products that allow researchers to track landscape changes over large areas over the past century.

Building Models in the Classroom: Taking Advantage of Sophisticated Geomorphic Numerical Tools Using a Simple Graphical User Interface

NASA Astrophysics Data System (ADS)

Roy, S. G.; Koons, P. O.; Gerbi, C. C.; Capps, D. K.; Tucker, G. E.; Rogers, Z. A.

2014-12-01

Sophisticated numerical tools exist for modeling geomorphic processes and linking them to tectonic and climatic systems, but they are often seen as inaccessible for users with an exploratory level of interest. We have improved the accessibility of landscape evolution models by producing a simple graphics user interface (GUI) that takes advantage of the Channel-Hillslope Integrated Landscape Development (CHILD) model. Model access is flexible: the user can edit values for basic geomorphic, tectonic, and climate parameters, or obtain greater control by defining the spatiotemporal distributions of those parameters. Users can make educated predictions by choosing their own parametric values for the governing equations and interpreting the results immediately through model graphics. This method of modeling allows users to iteratively build their understanding through experimentation. Use of this GUI is intended for inquiry and discovery-based learning activities. We discuss a number of examples of how the GUI can be used at the upper high school, introductory university, and advanced university level. Effective teaching modules initially focus on an inquiry-based example guided by the instructor. As students become familiar with the GUI and the CHILD model, the class can shift to more student-centered exploration and experimentation. To make model interpretations more robust, digital elevation models can be imported and direct comparisons can be made between CHILD model results and natural topography. The GUI is available online through the University of Maine's Earth and Climate Sciences website, through the Community Surface Dynamics Modeling System (CSDMS) model repository, or by contacting the corresponding author.

Untangling the eco-hydro-geomorphic knot: Insights from an experiment seeking to explain patterns, processes, and feedbacks at the catchment scale

NASA Astrophysics Data System (ADS)

Gutierrez-Jurado, H. A.; Vivoni, E. R.; Cikoski, C.; Bras, R. L.; Guan, H.; Harrison, B. J.; Istanbulluoglu, E.

2012-12-01

In recent years much has been advanced in the understanding of landscape patterns and processes by means of ever more complex modeling exercises coupling biological and physical mechanisms. Although meaningful, the outcomes of such models are frequently limited and undermined by the lack of proper datasets on which these results can be tested and verified. In this work we provide a summary of findings based on the observation of the ecologic-hydrologic-geomorphic interactions of a semiarid catchment with clear vegetation and geomorphic contrasts. Through various years of data from a network of hydrologic sensors deployed on and along the catchment slopes we were able to decouple the effect of vegetation, terrain properties and energy fluxes on the hydrologic dynamics of two coexisting but opposing ecosystems; a Juniper-savanna on a north facing slope (NFS) and a creosote shrubland on a south facing slope (SFS). Our analyses show that: 1) topographic modulated energy loads exert a first order control on the dynamics of evapotranspiration and soil moisture residence times in the catchment, with vegetation imposing a second order control at the onset of the growing season; 2) the soils exhibit a characteristic progression of moisture and temperature along the slope aspect continuum that is preserved throughout the year, going from a wetter and cooler NFS to a drier and warmer SFS; 3) there is remarkably distinct rainfall-runoff dynamics between the catchment slopes, where a much smaller precipitation threshold on the SFS triggers larger runoff peaks with more variable time lags in runoff initiation than at its NFS counterpart; 4) seasonal water balances of the NFS and SFS follow opposite trajectories in the year and point to distinct soil water pools for ET demands, where the NFS ET is mainly supported by shallow soil moisture while SFS ET may come from deeper soil moisture tapped by the roots of creosote shrubs. Preliminary results on the contribution of

Geomorphic Change Detection and Quantification Using LiDAR, SONAR and RTK-GPS of Sandbars along the Snake River in Hells Canyon

NASA Astrophysics Data System (ADS)

Morehead, M. D.; Wilson, T.; Butler, M.; Seal, N.

2012-12-01

Sediment depletion downstream of large dams causes long-term geomorphic change along a river reach. Short- and long-term, natural and human-altered discharge patterns cause additional geomorphic change. Annual high-resolution, topobathymetry data are being collected on sandbars to track patterns of geomorphic and volumetric change through time. The sandbars are located along the Hells Canyon reach of the Snake River on the Oregon/Idaho border. The bars are downstream of a number of dams that have cut off the upstream source of sand to the Hells Canyon reach. We are combining LiDAR data for above water areas, multibeam SONAR data for below water areas and RTK-GPS data for the water/land interface and densely vegetated areas. Idaho Power has installed and surveyed a control point network to allow accurate positioning of the data and aligning of the various data sets. Data densities are a few points per square meter with the RTK-GPS, tens of points per square meter with the SONAR, and up to hundreds of points per square meter with the ground-based LiDAR. Automated and manual methods are being used to clean the point cloud data. A number of techniques are being used to convert the point clouds to grids, typically utilizing a unique technique for each data type (GPS, LiDAR, and SONAR). Surface roughness data are being used to determine the edges of the sand region, especially in the underwater area where we do not have visual confirmation of the boundary. After the different data types are gridded, they are combined to create seamless surfaces which are then analyzed. The morphologies of the central crest and the back channel of the sandbars are changing between years. In years with higher than average spring flows, the central crest of the sandbars increases in elevation and the back channels deepen. In years with moderate and low spring flows, the height of the crests decline and the back channels fill in. The flattening of the sandbars is attributed to natural

Transcriptomic and Quantitative Proteomic Analyses Provide Insights Into the Phagocytic Killing of Hemocytes in the Oyster Crassostrea gigas

PubMed Central

Jiang, Shuai; Qiu, Limei; Wang, Lingling; Jia, Zhihao; Lv, Zhao; Wang, Mengqiang; Liu, Conghui; Xu, Jiachao; Song, Linsheng

2018-01-01

As invertebrates lack an adaptive immune system, they depend to a large extent on their innate immune system to recognize and clear invading pathogens. Although phagocytes play pivotal roles in invertebrate innate immunity, the molecular mechanisms underlying this killing remain unclear. Cells of this type from the Pacific oyster Crassostrea gigas were classified efficiently in this study via fluorescence-activated cell sorting (FACS) based on their phagocytosis of FITC-labeled latex beads. Transcriptomic and quantitative proteomic analyses revealed a series of differentially expressed genes (DEGs) and proteins present in phagocytes; of the 352 significantly high expressed proteins identified here within the phagocyte proteome, 262 corresponding genes were similarly high expressed in the transcriptome, while 140 of 205 significantly low expressed proteins within the proteome were transcriptionally low expressed. A pathway crosstalk network analysis of these significantly high expressed proteins revealed that phagocytes were highly activated in a number of antimicrobial-related biological processes, including oxidation–reduction and lysosomal proteolysis processes. A number of DEGs, including oxidase, lysosomal protease, and immune receptors, were also validated in this study using quantitative PCR, while seven lysosomal cysteine proteases, referred to as cathepsin Ls, were significantly high expressed in phagocytes. Results show that the expression level of cathepsin L protein in phagocytes [mean fluorescence intensity (MFI): 327 ± 51] was significantly higher (p < 0.01) than that in non-phagocytic hemocytes (MFI: 83 ± 26), while the cathepsin L protein was colocalized with the phagocytosed Vibrio splendidus in oyster hemocytes during this process. The results of this study collectively suggest that oyster phagocytes possess both potent oxidative killing and microbial disintegration capacities; these findings provide important insights into hemocyte

A bottom-up approach in estimating the measurement uncertainty and other important considerations for quantitative analyses in drug testing for horses.

PubMed

Leung, Gary N W; Ho, Emmie N M; Kwok, W Him; Leung, David K K; Tang, Francis P W; Wan, Terence S M; Wong, April S Y; Wong, Colton H F; Wong, Jenny K Y; Yu, Nola H

2007-09-07

derive the combined standard uncertainty. Finally, an expanded uncertainty is calculated at 99% one-tailed confidence level by multiplying the standard uncertainty with an appropriate coverage factor (k). A sample is considered positive if the determined concentration of the threshold substance exceeds its threshold by the expanded uncertainty. In addition, other important considerations, which can have a significant impact on quantitative analyses, will be presented.

Quantitative proteomics in biological research.

PubMed

Wilm, Matthias

2009-10-01

Proteomics has enabled the direct investigation of biological material, at first through the analysis of individual proteins, then of lysates from cell cultures, and finally of extracts from tissues and biopsies from entire organisms. Its latest manifestation - quantitative proteomics - allows deeper insight into biological systems. This article reviews the different methods used to extract quantitative information from mass spectra. It follows the technical developments aimed toward global proteomics, the attempt to characterize every expressed protein in a cell by at least one peptide. When applications of the technology are discussed, the focus is placed on yeast biology. In particular, differential quantitative proteomics, the comparison between an experiment and its control, is very discriminating for proteins involved in the process being studied. When trying to understand biological processes on a molecular level, differential quantitative proteomics tends to give a clearer picture than global transcription analyses. As a result, MS has become an even more indispensable tool for biochemically motivated biological research.

Geomorphic evidence for ancient seas in west Deuteronilus Mensae, Mars-1: Regional geomorphology

NASA Technical Reports Server (NTRS)

Parker, Timothy J.; Schneeberger, Dale M.; Pieri, David C.; Saunders, R. Stephen

1987-01-01

The fretted terrain in west Deuteronilus Mensae consists of extensive cratered upland penninsulas or isolated plateaus cut by long, finger-like canyons typically 10 to 20 km wide and upwards of 300 km long. The longest of these canyons trend roughly north-south to north-northeast, which may reflect some local structural and/or topographic control. At least three geomorphic zones roughly parallel to the lowland/upland boundary, suggestive of increasing modification northward, can be recognized on the fretted region of the region. The southern-most zone (zone A) consists of sharply defined fretted terrain. The middle zone (zone B) consists of well defined fretted terrain in which the plateau surfaces appear smoother, with a somewhat darker and much less varied albedo surface than those of zone A. The northern-most zone (zone C) consists of rounded or softened fretted terrain. The zones were interpreted as surface exposures of successively lower stratigraphic units.

UAS-SfM for coastal research: Geomorphic feature extraction and land cover classification from high-resolution elevation and optical imagery

USGS Publications Warehouse

Sturdivant, Emily; Lentz, Erika; Thieler, E. Robert; Farris, Amy; Weber, Kathryn; Remsen, David P.; Miner, Simon; Henderson, Rachel

2017-01-01

The vulnerability of coastal systems to hazards such as storms and sea-level rise is typically characterized using a combination of ground and manned airborne systems that have limited spatial or temporal scales. Structure-from-motion (SfM) photogrammetry applied to imagery acquired by unmanned aerial systems (UAS) offers a rapid and inexpensive means to produce high-resolution topographic and visual reflectance datasets that rival existing lidar and imagery standards. Here, we use SfM to produce an elevation point cloud, an orthomosaic, and a digital elevation model (DEM) from data collected by UAS at a beach and wetland site in Massachusetts, USA. We apply existing methods to (a) determine the position of shorelines and foredunes using a feature extraction routine developed for lidar point clouds and (b) map land cover from the rasterized surfaces using a supervised classification routine. In both analyses, we experimentally vary the input datasets to understand the benefits and limitations of UAS-SfM for coastal vulnerability assessment. We find that (a) geomorphic features are extracted from the SfM point cloud with near-continuous coverage and sub-meter precision, better than was possible from a recent lidar dataset covering the same area; and (b) land cover classification is greatly improved by including topographic data with visual reflectance, but changes to resolution (when <50 cm) have little influence on the classification accuracy.

How Does Decommissioning Forest Roads Effect Hydrologic and Geomorphic Risk?

NASA Astrophysics Data System (ADS)

Black, T.; Luce, C.; Cissel, R. M.; Nelson, N.; Staab, B.

2010-12-01

The US Forest Service is investigating road decommissioning projects to understand how treatments change hydrologic and geomorphic risks. Road treatment effect was measured using a before after control impact design (BACI), using the Geomorphic Road Analysis and Inventory Package (http://www.fs.fed.us/GRAIP). This suite of inventory and analysis tools evaluates: road-stream hydrologic connectivity, fine sediment production and delivery, shallow landslide risk, gully initiation risk, and risks associated with stream crossing failures. The Skokomish River study site is steep and wet and received a high intensity treatment including the removal of stream crossing pipes and fills, all ditch relief pipes and a full hillslope recontouring. Road to stream hydrologic connectivity was reduced by 70%. The treatments reduced fine sediment delivery by 21.8 tons or 81%. The removal of the stream crossing culverts and large associated road fills eliminated the risk of pipe plugging related failures and the eventual erosion of over 4,000 m3 of fill. The slope stability risk was assessed using a modified version of SINMAP (Pack et al, 2005). Risk below drain point locations on the original road was reduced as water was redistributed across the hillslope to waterbars and diffuse drainage. It is unclear; however, if landslide risk was reduced across the entire treated road length because treatments slightly increased risk in some areas where new concentrated drainage features were added above steep slopes. Similarly, values of a gully index ESI (Istanbulluoglu et al, 2003), were reduced at many of the original drainage points, however some new drainage was added. ESI values still exceed a predicted conservative initiation thresholds at some sites, therefore it is uncertain if gully risk will be changed. Mann Creek occupies a moderately steep mid-elevation site in Southern Idaho. The high intensity treatments removed all constructed road drainage features including stream crossing

Using Inequality Measures to Incorporate Environmental Justice into Regulatory Analyses

PubMed Central

Harper, Sam; Ruder, Eric; Roman, Henry A.; Geggel, Amelia; Nweke, Onyemaechi; Payne-Sturges, Devon; Levy, Jonathan I.

2013-01-01

Formally evaluating how specific policy measures influence environmental justice is challenging, especially in the context of regulatory analyses in which quantitative comparisons are the norm. However, there is a large literature on developing and applying quantitative measures of health inequality in other settings, and these measures may be applicable to environmental regulatory analyses. In this paper, we provide information to assist policy decision makers in determining the viability of using measures of health inequality in the context of environmental regulatory analyses. We conclude that quantification of the distribution of inequalities in health outcomes across social groups of concern, considering both within-group and between-group comparisons, would be consistent with both the structure of regulatory analysis and the core definition of environmental justice. Appropriate application of inequality indicators requires thorough characterization of the baseline distribution of exposures and risks, leveraging data generally available within regulatory analyses. Multiple inequality indicators may be applicable to regulatory analyses, and the choice among indicators should be based on explicit value judgments regarding the dimensions of environmental justice of greatest interest. PMID:23999551

Analyses of Mobilization Manpower Supply and Demand.

DTIC Science & Technology

1982-03-01

7AD-AI30 148 ANALYSES OF MOBIL ZATION MANPOWER SUPPLY AND DEMAND U) l1 . ADMINISTRATIVE SCIENCES CORP SPRINOFIELD VA BREAU EAL MAR82 ASCR134...79-C-0527 for use in identifying and quantifying issues in the CPAM process, and to employ the model for selected quantitative ard qualitative analyses...nurses and corpsmen) to operate on a Commander FX Microcomputer, to be used by 2 the Bureau of Medicine and Surgery to develop inputs for Navy-wide

A dam in the drylands: Effects of soil geomorphic actions on a mediterranean alluvial scrubland and the endangered Santa Ana woolly star (Eriastrum densifolium spp. sanctorum)

NASA Astrophysics Data System (ADS)

Hernandez, R. R.; Sandquist, D. R.

2017-12-01

When dams preclude natural flow, maintenance of river ecosystems adapted to infrequent, catastrophic floods poses unique challenges. Further, riparian mediterranean ecosystems with high inter-annual and seasonal precipitation variability, coupled with complicated patterns of biotic and abiotic heterogeneity, intensify challenges for management under disrupted flow regimes. In this study, we evaluated the impact of six unique soil geomorphic actions on the rare Riversidian alluvial fan sage scrub plant community, which includes the endangered Santa Ana River woolly star (Eriastrum densifolium spp. sanctorum [Eds]) after 5, 7.5, and 13 years of response. We implemented a complete randomized block design, with each block incorporating six geomorphic treatments: cleared, diked, cut, filled (10 cm soil), filled (20 cm soil), and filled (30 cm soil), mimicking one of more physical disturbance process occurring after a natural flood event. We performed native and exotic plant community surveys on full plots in summer 2006, representing 7.5 years of response from the original 1999 disturbance, and on (re-disturbed half) plots in fall 2012, representing (5 years) 13 years of response. We found that recruitment of Eds into late-successional (i.e., control) plots is highly limited (0.0, 4.1, and 2.5% cover) after 5, 7.5, and 13 years, respectively, with implications for the persistence of this species, whereas the cut treatment showed significantly higher cover of Eds (25.3, 53.4, 14.3%, respectively). Our results also suggest that exotic annual grasses may inhibit Eds and other Riversidian alluvial fan sage scrub plant community members under a disrupted flow regime but that soil geomorphic treatment of late-successional habitat can be effective in facilitating Eds and Riversidian alluvial fan sage scrub establishment.

GeoGML - a Mark-up Language for 4-dimensional geomorphic objects and processes

NASA Astrophysics Data System (ADS)

Löwner, M.-O.

2009-04-01

We developed an use-oriented GML3 based data model that enables researchers to share 4-dimensional information about landforms and their process related interaction. Using the Unified Modelling Language it is implemented as a GML3-based application schema available on the Internet. As the science of the land's surface Geomorphology investigates landforms, their change, and the processes causing this change. The main problem of comparing research results in geomorphology is that the objects under investigation are composed of 3-dimensional geometries that change in time due to processes of material fluxes, e. g. soil erosion or mass movements. They have internal properties, e. g. soil texture or bulk density, that determine the effectiveness of these processes but are under change as well. Worldwide geographical data can be shared over the Internet using Web Feature Services. The precondition is the development of a semantic model or ontology based on international standards like GML3 as an implementation of the ISO 109107 and others. Here we present a GML3-based Mark-up Language or application schema for geomorphic purposes that fulfils the following requirements: First, an object-oriented view of landforms with a true 3-dimensional geometric data format was established. Second, the internal structure and attributes of landforms can be stored. Third, the interaction of processes and landforms is represented. Fourth, the change of all these mentioned attributes over time was considered. The presented application schema is available on the Internet and therefore a first step to enable researchers to share information using an OGC's Web feature service. In this vein comparing modelling results of landscape evolution with results of other scientist's observations is possible. Compared to prevalent data concepts the model presented makes it possible to store information about landforms, their geometry and the characteristics in more detail. It allows to represent the 3D

Identification of Geomorphic Conditions Favoring Preservation of Multiple Individual Displacements Across Transform Faults

NASA Astrophysics Data System (ADS)

Williams, P. L.; Phillips, D. A.; Bowles-Martinez, E.; Masana, E.; Stepancikova, P.

2010-12-01

Terrestrial and airborne LiDAR data, and low altitude aerial photography have been utilized in conjunction with field work to identify and map single and multiple-event stream-offsets along all strands of the San Andreas fault in the Coachella Valley. Goals of the work are characterizing the range of displacements associated with the fault’s prehistoric surface ruptures, evaluating patterns of along-fault displacement, and disclosing processes associated with the prominent Banning-Mission Creek fault junction. Preservation offsets is associated with landscape conditions including: (1) well-confined and widely spaced source streams up-slope of the fault; (2) persistent geomorphic surfaces below the fault; (3) slope directions oriented approximately perpendicular to the fault. Notably, a pair of multiple-event offset sites have been recognized in coarse fan deposits below the Mission Creek fault near 1000 Palms oasis. Each of these sites is associated with a single source drainage oriented approximately perpendicular to the fault, and preserves a record of individual fault displacements affecting the southern portion of the Mission Creek branch of the San Andreas fault. The two sites individually record long (>10 event) slip-per-event histories. Documentation of the sites indicates a prevalence of moderate displacements and a small number of large offsets. This is consistent with evidence developed in systematic mapping of individual and multiple event stream offsets in the area extending 70 km south to Durmid Hill. Challenges to site interpretation include the presence of closely spaced en echelon fault branches and indications of stream avulsion in the area of the modern fault crossing. Conversely, strong bar and swale topography produce high quality offset indicators that can be identified across en echelon branches in most cases. To accomplish the detailed mapping needed to fully recover the complex yet well-preserved geomorphic features under investigation, a

USING MICROSOFT OFFICE EXCEL® 2007 TO CONDUCT GENERALIZED MATCHING ANALYSES

PubMed Central

Reed, Derek D

2009-01-01

The generalized matching equation is a robust and empirically supported means of analyzing relations between reinforcement and behavior. Unfortunately, no simple task analysis is available to behavior analysts interested in using the matching equation to evaluate data in clinical or applied settings. This technical article presents a task analysis for the use of Microsoft Excel to analyze and plot the generalized matching equation. Using a data-based case example and a step-by-step guide for completing the analysis, these instructions are intended to promote the use of quantitative analyses by researchers with little to no experience in quantitative analyses or the matching law. PMID:20514196

Using Microsoft Office Excel 2007 to conduct generalized matching analyses.

PubMed

Reed, Derek D

2009-01-01

The generalized matching equation is a robust and empirically supported means of analyzing relations between reinforcement and behavior. Unfortunately, no simple task analysis is available to behavior analysts interested in using the matching equation to evaluate data in clinical or applied settings. This technical article presents a task analysis for the use of Microsoft Excel to analyze and plot the generalized matching equation. Using a data-based case example and a step-by-step guide for completing the analysis, these instructions are intended to promote the use of quantitative analyses by researchers with little to no experience in quantitative analyses or the matching law.

Accuracy of quantitative visual soil assessment

NASA Astrophysics Data System (ADS)

van Leeuwen, Maricke; Heuvelink, Gerard; Stoorvogel, Jetse; Wallinga, Jakob; de Boer, Imke; van Dam, Jos; van Essen, Everhard; Moolenaar, Simon; Verhoeven, Frank; Stoof, Cathelijne

2016-04-01

farmers carried out quantitative visual observations all independently from each other. All observers assessed five sites, having a sand, peat or clay soil. For almost all quantitative visual observations the spread of observed values was low (coefficient of variation < 1.0), except for the number of biopores and gley mottles. Furthermore, farmers' observed mean values were significantly higher than soil scientists' mean values, for soil structure, amount of gley mottles and compaction. This study showed that VSA could be a valuable tool to assess soil quality. Subjectivity, due to the background of the observer, might influence the outcome of visual assessment of some soil properties. In countries where soil analyses can easily be carried out, VSA might be a good replenishment to available soil chemical analyses, and in countries where it is not feasible to carry out soil analyses, VSA might be a good start to assess soil quality.

Quantitative Research Methods in Chaos and Complexity: From Probability to Post Hoc Regression Analyses

ERIC Educational Resources Information Center

Gilstrap, Donald L.

2013-01-01

In addition to qualitative methods presented in chaos and complexity theories in educational research, this article addresses quantitative methods that may show potential for future research studies. Although much in the social and behavioral sciences literature has focused on computer simulations, this article explores current chaos and…

[Clinical research XXIII. From clinical judgment to meta-analyses].

PubMed

Rivas-Ruiz, Rodolfo; Castelán-Martínez, Osvaldo D; Pérez-Rodríguez, Marcela; Palacios-Cruz, Lino; Noyola-Castillo, Maura E; Talavera, Juan O

2014-01-01

Systematic reviews (SR) are studies made in order to ask clinical questions based on original articles. Meta-analysis (MTA) is the mathematical analysis of SR. These analyses are divided in two groups, those which evaluate the measured results of quantitative variables (for example, the body mass index -BMI-) and those which evaluate qualitative variables (for example, if a patient is alive or dead, or if he is healing or not). Quantitative variables generally use the mean difference analysis and qualitative variables can be performed using several calculations: odds ratio (OR), relative risk (RR), absolute risk reduction (ARR) and hazard ratio (HR). These analyses are represented through forest plots which allow the evaluation of each individual study, as well as the heterogeneity between studies and the overall effect of the intervention. These analyses are mainly based on Student's t test and chi-squared. To take appropriate decisions based on the MTA, it is important to understand the characteristics of statistical methods in order to avoid misinterpretations.

Impact of vaccine herd-protection effects in cost-effectiveness analyses of childhood vaccinations. A quantitative comparative analysis.

PubMed

Holubar, Marisa; Stavroulakis, Maria Christina; Maldonado, Yvonne; Ioannidis, John P A; Contopoulos-Ioannidis, Despina

2017-01-01

Inclusion of vaccine herd-protection effects in cost-effectiveness analyses (CEAs) can impact the CEAs-conclusions. However, empirical epidemiologic data on the size of herd-protection effects from original studies are limited. We performed a quantitative comparative analysis of the impact of herd-protection effects in CEAs for four childhood vaccinations (pneumococcal, meningococcal, rotavirus and influenza). We considered CEAs reporting incremental-cost-effectiveness-ratios (ICERs) (per quality-adjusted-life-years [QALY] gained; per life-years [LY] gained or per disability-adjusted-life-years [DALY] avoided), both with and without herd protection, while keeping all other model parameters stable. We calculated the size of the ICER-differences without vs with-herd-protection and estimated how often inclusion of herd-protection led to crossing of the cost-effectiveness threshold (of an assumed societal-willingness-to-pay) of $50,000 for more-developed countries or X3GDP/capita (WHO-threshold) for less-developed countries. We identified 35 CEA studies (20 pneumococcal, 4 meningococcal, 8 rotavirus and 3 influenza vaccines) with 99 ICER-analyses (55 per-QALY, 27 per-LY and 17 per-DALY). The median ICER-absolute differences per QALY, LY and DALY (without minus with herd-protection) were $15,620 (IQR: $877 to $48,376); $54,871 (IQR: $787 to $115,026) and $49 (IQR: $15 to $1,636) respectively. When the target-vaccination strategy was not cost-saving without herd-protection, inclusion of herd-protection always resulted in more favorable results. In CEAs that had ICERs above the cost-effectiveness threshold without herd-protection, inclusion of herd-protection led to crossing of that threshold in 45% of the cases. This impacted only CEAs for more developed countries, as all but one CEAs for less developed countries had ICERs below the WHO-cost-effectiveness threshold even without herd-protection. In several analyses, recommendation for the adoption of the target

Impact of vaccine herd-protection effects in cost-effectiveness analyses of childhood vaccinations. A quantitative comparative analysis

PubMed Central

Maldonado, Yvonne; Ioannidis, John P. A.; Contopoulos-Ioannidis, Despina

2017-01-01

Background Inclusion of vaccine herd-protection effects in cost-effectiveness analyses (CEAs) can impact the CEAs-conclusions. However, empirical epidemiologic data on the size of herd-protection effects from original studies are limited. Methods We performed a quantitative comparative analysis of the impact of herd-protection effects in CEAs for four childhood vaccinations (pneumococcal, meningococcal, rotavirus and influenza). We considered CEAs reporting incremental-cost-effectiveness-ratios (ICERs) (per quality-adjusted-life-years [QALY] gained; per life-years [LY] gained or per disability-adjusted-life-years [DALY] avoided), both with and without herd protection, while keeping all other model parameters stable. We calculated the size of the ICER-differences without vs with-herd-protection and estimated how often inclusion of herd-protection led to crossing of the cost-effectiveness threshold (of an assumed societal-willingness-to-pay) of $50,000 for more-developed countries or X3GDP/capita (WHO-threshold) for less-developed countries. Results We identified 35 CEA studies (20 pneumococcal, 4 meningococcal, 8 rotavirus and 3 influenza vaccines) with 99 ICER-analyses (55 per-QALY, 27 per-LY and 17 per-DALY). The median ICER-absolute differences per QALY, LY and DALY (without minus with herd-protection) were $15,620 (IQR: $877 to $48,376); $54,871 (IQR: $787 to $115,026) and $49 (IQR: $15 to $1,636) respectively. When the target-vaccination strategy was not cost-saving without herd-protection, inclusion of herd-protection always resulted in more favorable results. In CEAs that had ICERs above the cost-effectiveness threshold without herd-protection, inclusion of herd-protection led to crossing of that threshold in 45% of the cases. This impacted only CEAs for more developed countries, as all but one CEAs for less developed countries had ICERs below the WHO-cost-effectiveness threshold even without herd-protection. In several analyses, recommendation for the

Quantitative solid-state 13C nuclear magnetic resonance spectrometric analyses of wood xylen: effect of increasing carbohydrate content

USGS Publications Warehouse

Bates, A.L.; Hatcher, P.G.

1992-01-01

Isolated lignin with a low carbohydrate content was spiked with increasing amounts of alpha-cellulose, and then analysed by solid-state 13C nuclear magnetic resonance (NMR) using cross-polarization with magic angle spinning (CPMAS) and dipolar dephasing methods in order to assess the quantitative reliability of CPMAS measurement of carbohydrate content and to determine how increasingly intense resonances for carbohydrate carbons affect calculations of the degree of lignin's aromatic ring substitution and methoxyl carbon content. Comparisons were made of the carbohydrate content calculated by NMR with carbohydrate concentrations obtained by phenol-sulfuric acid assay and by the calculation from the known amounts of cellulose added. The NMR methods used in this study yield overestimates for carbohydrate carbons due to resonance area overlap from the aliphatic side chain carbons of lignin. When corrections are made for these overlapping resonance areas, the NMR results agree very well with results obtained by other methods. Neither the calculated methoxyl carbon content nor the degree of aromatic ring substitution in lignin, both calculated from dipolar dephasing spectra, change with cellulose content. Likewise, lignin methoxyl content does not correlate with cellulose abundance when measured by integration of CPMAS spectra. ?? 1992.

Geomorphic and riparian forest influences on characteristics of large wood and large-wood jams in old-growth and second-growth forests in Northern Michigan, USA

Treesearch

Arthur E.L. Morris; P. Charles Goebel; Brian J. Palik

2007-01-01

Large wood (LW; pieces with diameter greater than 10 cm and length greater than 1 m) and large-wood jams (LWJs; two or more pieces of LW in contact with each other) are important components of stream ecosystems that are often distributed along stream channels in response to geomorphic and riparian forest factors that interact hierarchically. As a result, information on...

Geomorphic response to flow regulation and channel and floodplain alteration in the gravel-bedded Cedar River, Washington, USA

USGS Publications Warehouse

Gendaszek, Andrew S.; Magirl, Christopher S.; Czuba, Christiana R.

2012-01-01

Decadal- to annual-scale analyses of changes to the fluvial form and processes of the Cedar River in Washington State, USA, reveal the effects of flow regulation, bank stabilization, and log-jam removal on a gravel-bedded river in a temperate climate. During the twentieth century, revetments were built along ~ 60% of the lower Cedar River's length and the 2-year return period flow decreased by 47% following flow regulation beginning in 1914. The formerly wide, anastomosing channel narrowed by over 50% from an average of 47 m in 1936 to 23 m in 1989 and became progressively single threaded. Subsequent high flows and localized revetment removal contributed to an increase in mean channel width to about 34 m by 2011. Channel migration rates between 1936 and 2011 were up to 8 m/year in reaches not confined by revetments or valley walls and less than analysis uncertainty throughout most of the Cedar River's length where bank armoring restricted channel movement. In unconfined reaches where large wood and sediment can be recruited, contemporary high flows, though smaller in magnitude than preregulation high flows, form and maintain geomorphic features such as pools, gravel bars, and side channels. Reaches confined by revetments remain mostly unmodified in the regulated flow regime. While high flows are important for maintaining channel dynamics in the Cedar River, their effectiveness is currently reduced by revetments, limited sediment supply, the lack of large wood available for recruitment to the channel, and decreased magnitude since flow regulation.

Quantitative analyses of the behavior of exogenously added bacteria during an acidulocomposting process.

PubMed

Suematsu, Takatoshi; Yamashita, Satoshi; Hemmi, Hisashi; Yoshinari, Ayaka; Shimoyama, Takefumi; Nakayama, Toru; Nishino, Tokuzo

2012-07-01

The behavior of adventitious bacteria during an acidulocomposting process was quantitatively analyzed in garbage-free trials. The numbers of the added Bacillus subtilis and Pseudomonas putida cells diminished in a first-order manner with t(1/2) values of 0.45d and 0.79d, respectively, consistent with the observed stability of the acidulocomposting function. Copyright © 2012 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

Quantitative proteomic analyses of the microbial degradation of estrone under various background nitrogen and carbon conditions.

PubMed

Du, Zhe; Chen, Yinguang; Li, Xu

2017-10-15

Microbial degradation of estrogenic compounds can be affected by the nitrogen source and background carbon in the environment. However, the underlying mechanisms are not well understood. The objective of this study was to elucidate the molecular mechanisms of estrone (E1) biodegradation at the protein level under various background nitrogen (nitrate or ammonium) and carbon conditions (no background carbon, acetic acid, or humic acid as background carbon) by a newly isolated bacterial strain. The E1 degrading bacterial strain, Hydrogenophaga atypica ZD1, was isolated from river sediments and its proteome was characterized under various experimental conditions using quantitative proteomics. Results show that the E1 degradation rate was faster when ammonium was used as the nitrogen source than with nitrate. The degradation rate was also faster when either acetic acid or humic acid was present in the background. Proteomics analyses suggested that the E1 biodegradation products enter the tyrosine metabolism pathway. Compared to nitrate, ammonium likely promoted E1 degradation by increasing the activities of the branched-chain-amino-acid aminotransferase (IlvE) and enzymes involved in the glutamine synthetase-glutamine oxoglutarate aminotransferase (GS-GOGAT) pathway. The increased E1 degradation rate with acetic acid or humic acid in the background can also be attributed to the up-regulation of IlvE. Results from this study can help predict and explain E1 biodegradation kinetics under various environmental conditions. Copyright © 2017 Elsevier Ltd. All rights reserved.

Climatic and geomorphic controls on low flow hydrograph recession

NASA Astrophysics Data System (ADS)

Chandler, D. G.; Daley, M.; Kasaee Roodsari, B.; Shaw, S. B.; McNamara, J.

2017-12-01

Large scale operational hydrologic models should be capable of predicting seasonally low flow and stream intermittency as well as peak flow and inundation. We contrast examples of controls on low flow exerted by geomorphic and climatic setting at small catchment study sites in the Northeast and Northwest of the USA to indicate differences in hydrologic processes. Both regions accumulate winter snowpack and have an extended spring freshet, but the Reynolds Creek CZO and Dry Creek Experimental Watershed (both in Idaho mountains) experience a protracted summer drought, with occasional storms whereas precipitation free periods greater than five days are uncommon in the hilly Sleepers River (Vermont), and Yellow Barn State Forest (New York) and at Ley Creek, on a glacial plain (New York). At both Dry Creek and Reynolds Creek, headwater stream flow direction was transverse to groundwater, and below field capacity discharge was well related to either the ground water surface or corresponded to inversion of the hydraulic gradient over the depth of the soil. At all sites except Ley Creek, the headwaters became intermittent as the main tributary discharge declined, often disconnecting the surface source springs and seeps from the valley bottom stream. At the Idaho sites recession analysis for main stem was further complicated by consumptive use for irrigation and domestic wells. Modeling the recession characteristics of these various settings and across stream orders results in a variety of exponent values for power law scaling approaches that indicate the importance of site context for modeling low flow.

The importance of stochasticity and internal variability in geomorphic erosion system

NASA Astrophysics Data System (ADS)

Kim, J.; Ivanov, V. Y.; Fatichi, S.

2016-12-01

Understanding soil erosion is essential for a range of studies but the predictive skill of prognostic models and reliability of national-scale assessments have been repeatedly questioned. Indeed, data from multiple environments indicate that fluvial soil loss is highly non-unique and its frequency distributions exhibit heavy tails. We reveal that these features are attributed to the high sensitivity of erosion response to micro-scale variations of soil erodibility - `geomorphic internal variability'. The latter acts as an intermediary between forcing and erosion dynamics, augmenting the conventionally emphasized effects of `external variability' (climate, topography, land use, management form). Furthermore, we observe a reduction of erosion non-uniqueness at larger temporal scales that correlates with environment stochasticity. Our analysis shows that this effect can be attributed to the larger likelihood of alternating characteristic regimes of sediment dynamics. The corollary of this study is that the glaring gap - the inherently large uncertainties and the fallacy of representativeness of central tendencies - must be conceded in soil loss assessments. Acknowledgement: This research was supported by a grant (16AWMP-B083066-03) from Water Management Research Program funded by Ministry of Land, Infrastructure and Transport of Korean government, and by the faculty research fund of Sejong University in 2016.

Using NASA`s Airborne Topographic Mapper IV to Quantify Geomorphic Change in Arid Southwestern Stream Systems

NASA Astrophysics Data System (ADS)

Finnegan, D. C.; Krabill, W.; Lichvar, R. W.; Ericsson, M. P.; Frederick, E.; Manizade, S.; Yungel, J.; Sonntag, J.; Swift, R.

2005-12-01

Understanding how arid stream systems respond to individual climatic events is often difficult given the dynamic and `flashy' nature of most watersheds and the unpredictable nature of individual storm events. Until recently conventional methods for quantifying change dictated the use of stream gauge measurements coupled with periodic cross-section measurements to quantify changes in large-scale channel geometry. Using this approach to quantify change across large areas often proves to be impractical and unattainable given the laborious nature of most surveying techniques including modern GPS systems. Alternately, airborne laser technologies such as NASA's Airborne Topographic Mapper (ATM) are capable of quantifying small-scale changes (~5-10cm) across large-scale terrain rapidly and accurately. The ATM was developed at the NASA-GSFC Wallops Flight Facility. Its current version, ATM-4, measures topography 5,000 times per second across a 45-degree swath below the aircraft by transmitting a 532nm (green) laser pulse and receiving the backscattered signal in a high-speed waveform digitizer. The laser range measurements are combined with aircraft location from GPS and attitude from an inertial navigation system (INS) to provide a precise XYZ coordinate for each (~1-meter diameter) laser footprint on the ground. Our work focuses on the use of airborne laser altimetry to quantify the nature of individual surfaces and the geomorphic change that occurs within small arid stream systems during significant storm events. In September of 2003 and 2005 acquisition surveys using NASA's ATM-IV were flown over Mission Creek, a small arid stream system in Southern California's Mojave Desert with a relatively long gauging history (>40yrs), allowing us to quantify the geomorphic change occurring within the channel as a result of the record storm events during the winter of 2004-2005. Preliminary results associated with our work are encouraging and lead us to believe that when compared

Analyser-based phase contrast image reconstruction using geometrical optics.

PubMed

Kitchen, M J; Pavlov, K M; Siu, K K W; Menk, R H; Tromba, G; Lewis, R A

2007-07-21

Analyser-based phase contrast imaging can provide radiographs of exceptional contrast at high resolution (<100 microm), whilst quantitative phase and attenuation information can be extracted using just two images when the approximations of geometrical optics are satisfied. Analytical phase retrieval can be performed by fitting the analyser rocking curve with a symmetric Pearson type VII function. The Pearson VII function provided at least a 10% better fit to experimentally measured rocking curves than linear or Gaussian functions. A test phantom, a hollow nylon cylinder, was imaged at 20 keV using a Si(1 1 1) analyser at the ELETTRA synchrotron radiation facility. Our phase retrieval method yielded a more accurate object reconstruction than methods based on a linear fit to the rocking curve. Where reconstructions failed to map expected values, calculations of the Takagi number permitted distinction between the violation of the geometrical optics conditions and the failure of curve fitting procedures. The need for synchronized object/detector translation stages was removed by using a large, divergent beam and imaging the object in segments. Our image acquisition and reconstruction procedure enables quantitative phase retrieval for systems with a divergent source and accounts for imperfections in the analyser.

Industrial ecology: Quantitative methods for exploring a lower carbon future

NASA Astrophysics Data System (ADS)

Thomas, Valerie M.

2015-03-01

Quantitative methods for environmental and cost analyses of energy, industrial, and infrastructure systems are briefly introduced and surveyed, with the aim of encouraging broader utilization and development of quantitative methods in sustainable energy research. Material and energy flow analyses can provide an overall system overview. The methods of engineering economics and cost benefit analysis, such as net present values, are the most straightforward approach for evaluating investment options, with the levelized cost of energy being a widely used metric in electricity analyses. Environmental lifecycle assessment has been extensively developed, with both detailed process-based and comprehensive input-output approaches available. Optimization methods provide an opportunity to go beyond engineering economics to develop detailed least-cost or least-impact combinations of many different choices.

An object-oriented framework for distributed hydrologic and geomorphic modeling using triangulated irregular networks

NASA Astrophysics Data System (ADS)

Tucker, Gregory E.; Lancaster, Stephen T.; Gasparini, Nicole M.; Bras, Rafael L.; Rybarczyk, Scott M.

2001-10-01

We describe a new set of data structures and algorithms for dynamic terrain modeling using a triangulated irregular network (TINs). The framework provides an efficient method for storing, accessing, and updating a Delaunay triangulation and its associated Voronoi diagram. The basic data structure consists of three interconnected data objects: triangles, nodes, and directed edges. Encapsulating each of these geometric elements within a data object makes it possible to essentially decouple the TIN representation from the modeling applications that make use of it. Both the triangulation and its corresponding Voronoi diagram can be rapidly retrieved or updated, making these methods well suited to adaptive remeshing schemes. We develop a set of algorithms for defining drainage networks and identifying closed depressions (e.g., lakes) for hydrologic and geomorphic modeling applications. We also outline simple numerical algorithms for solving network routing and 2D transport equations within the TIN framework. The methods are illustrated with two example applications, a landscape evolution model and a distributed rainfall-runoff model.

Applying 3D Dynamic Visualisation to (Palaeo) Geomorphic Reconstruction: Modelling a Tenth Century Jökulhlaup at Sólheimajökull Glacier, South Iceland.

NASA Astrophysics Data System (ADS)

Booth, Laura; Isaacs, John

2014-05-01

Jökulhlaup (glacial outburst floods) are caused by subglacial geothermal activity melting overlying ice, or by draining of ice-dammed lakes. They pose a recurring hazard along Iceland's south coast where volcano-glacial interactions create often unpredictable, high-magnitude floods. Gathering information about past floods is crucial for projecting findings to present day scenarios and developing future predictions for contemporary flood routes. Understanding the physical setting or surrounding environment is essential in palaeo-flood reconstruction as drainage routes are ultimately defined by local topography and changing ice cover. At Sólheimajökull glacier, which drains the southern portion of Mýrdalsjökull ice cap, field evidence has been collected of a Tenth Century flood, recorded in the Icelander's Landnámabók (Book of Settlements). It was an exceptional event in terms of generation, magnitude and geomorphic impact. Although now fragmented and piecemeal, many of its direct (and indirect) geomorphological and sedimentary markers are still relatively well preserved and have been identified, mapped and dated to unravel the sequence of events played out during this significant episode in the glacial history and complex regional flood chronology. VolcVis, an innovative, bespoke visualisation platform, is developed and applied for the first time in visualising volcanic jökulhlaup. The platform is created using the Microsoft XNA game development framework, which facilitates rapid game engine production by providing a set of tools utilising a managed runtime environment. VolcVis can render large amounts of data efficiently and still provide an extremely high level of interaction with the data being presented, including full freedom of motion. This enables synthesis and presentation of field results from Sólheimajökull in a novel way, creating an interactive, multi-perspective, three-dimensional (3D) prototype model. The platform combines Digital Elevation

Application of a new genetic classification and semi-automated geomorphic mapping approach in the Perth submarine canyon, Australia

NASA Astrophysics Data System (ADS)

Picard, K.; Nanson, R.; Huang, Z.; Nichol, S.; McCulloch, M.

2017-12-01

The acquisition of high resolution marine geophysical data has intensified in recent years (e.g. multibeam echo-sounding, sub-bottom profiling). This progress provides the opportunity to classify and map the seafloor in greater detail, using new methods that preserve the links between processes and morphology. Geoscience Australia has developed a new genetic classification approach, nested within the Harris et al (2014) global seafloor mapping framework. The approach divides parent units into sub-features based on established classification schemes and feature descriptors defined by Bradwell et al. (2016: http://nora.nerc.ac.uk/), the International Hydrographic Organization (https://www.iho.int) and the Coastal Marine and Ecological Classification Standard (https://www.cmecscatalog.org). Owing to the ecological significance of submarine canyon systems in particular, much recent attention has focused on defining their variation in form and process, whereby they can be classified using a range of topographic metrics, fluvial dis/connection and shelf-incising status. The Perth Canyon is incised into the continental slope and shelf of southwest Australia, covering an area of >1500 km2 and extending from 4700 m water depth to the shelf break in 170 m. The canyon sits within a Marine Protected Area, incorporating a Marine National Park and Habitat Protection Zone in recognition of its benthic and pelagic biodiversity values. However, detailed information of the spatial patterns of the seabed habitats that influence this biodiversity is lacking. Here we use 20 m resolution bathymetry and acoustic backscatter data acquired in 2015 by the Schmidt Ocean Institute plus sub-bottom datasets and sediment samples collected Geoscience Australia in 2005 to apply the new geomorphic classification system to the Perth Canyon. This presentation will show the results of the geomorphic feature mapping of the canyon and its application to better defining potential benthic habitats.

Quantitative 4D analyses of epithelial folding during Drosophila gastrulation.

PubMed

Khan, Zia; Wang, Yu-Chiun; Wieschaus, Eric F; Kaschube, Matthias

2014-07-01

Understanding the cellular and mechanical processes that underlie the shape changes of individual cells and their collective behaviors in a tissue during dynamic and complex morphogenetic events is currently one of the major frontiers in developmental biology. The advent of high-speed time-lapse microscopy and its use in monitoring the cellular events in fluorescently labeled developing organisms demonstrate tremendous promise in establishing detailed descriptions of these events and could potentially provide a foundation for subsequent hypothesis-driven research strategies. However, obtaining quantitative measurements of dynamic shapes and behaviors of cells and tissues in a rapidly developing metazoan embryo using time-lapse 3D microscopy remains technically challenging, with the main hurdle being the shortage of robust imaging processing and analysis tools. We have developed EDGE4D, a software tool for segmenting and tracking membrane-labeled cells using multi-photon microscopy data. Our results demonstrate that EDGE4D enables quantification of the dynamics of cell shape changes, cell interfaces and neighbor relations at single-cell resolution during a complex epithelial folding event in the early Drosophila embryo. We expect this tool to be broadly useful for the analysis of epithelial cell geometries and movements in a wide variety of developmental contexts. © 2014. Published by The Company of Biologists Ltd.

A drainage basin scale model for earthflow-prone landscapes over geomorphic timescales

NASA Astrophysics Data System (ADS)

Booth, A. M.; Roering, J. J.

2009-12-01

Landscape evolution models can be informative tools for understanding how sediment transport processes, regulated by tectonic and climatic forcing, interact to control fundamental landscape characteristics such as relief, channel network organization, and hillslope form. Many studies have proposed simple mathematical geomorphic transport laws for modeling hillslope and fluvial processes, and these models are capable of generating synthetic landscapes similar to many of those observed in nature. However, deep-seated mass movements dominate the topographic development of many tectonically active landscapes, yet few compelling transport laws exist for accurately describing these processes at the drainage basin scale. Specifically, several detailed field and theoretical studies describe the mechanics of deep-seated earthflows, such as those found throughout the northern California coast ranges, but these studies are often restricted to a single earthflow site. Here, we generalize earthflow behavior to larger spatial and geomorphically significant temporal scales using a mathematical model to determine how interactions between earthflow, weathering, hillslope, and fluvial processes control sediment flux and topographic form. The model couples the evolution of the land surface with the evolution of a weathered zone driven by fluctuations in the groundwater table. The lower boundary of this weathered zone sets the potential failure plane for earthflows, which occur once the shear stress on this plane exceeds a threshold value. Earthflows deform downslope with a non-Newtonian viscous rheology while gullying, modeled with a stream power equation, and soil creep, modeled with a diffusion equation, continuously act on the land surface. To compare the intensities of these different processes, we define a characteristic timescale for each modeled process, and demonstrate how the ratios of these timescales control the steady-state topographic characteristics of the simulated

Microfluidics-based digital quantitative PCR for single-cell small RNA quantification.

PubMed

Yu, Tian; Tang, Chong; Zhang, Ying; Zhang, Ruirui; Yan, Wei

2017-09-01

Quantitative analyses of small RNAs at the single-cell level have been challenging because of limited sensitivity and specificity of conventional real-time quantitative PCR methods. A digital quantitative PCR (dqPCR) method for miRNA quantification has been developed, but it requires the use of proprietary stem-loop primers and only applies to miRNA quantification. Here, we report a microfluidics-based dqPCR (mdqPCR) method, which takes advantage of the Fluidigm BioMark HD system for both template partition and the subsequent high-throughput dqPCR. Our mdqPCR method demonstrated excellent sensitivity and reproducibility suitable for quantitative analyses of not only miRNAs but also all other small RNA species at the single-cell level. Using this method, we discovered that each sperm has a unique miRNA profile. © The Authors 2017. Published by Oxford University Press on behalf of Society for the Study of Reproduction. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Geomorphic Map of Worcester County, Maryland, Interpreted from a LIDAR-Based, Digital Elevation Model

USGS Publications Warehouse

Newell, Wayne L.; Clark, Inga

2008-01-01

A recently compiled mosaic of a LIDAR-based digital elevation model (DEM) is presented with geomorphic analysis of new macro-topographic details. The geologic framework of the surficial and near surface late Cenozoic deposits of the central uplands, Pocomoke River valley, and the Atlantic Coast includes Cenozoic to recent sediments from fluvial, estuarine, and littoral depositional environments. Extensive Pleistocene (cold climate) sandy dune fields are deposited over much of the terraced landscape. The macro details from the LIDAR image reveal 2 meter-scale resolution of details of the shapes of individual dunes, and fields of translocated sand sheets. Most terrace surfaces are overprinted with circular to elliptical rimmed basins that represent complex histories of ephemeral ponds that were formed, drained, and overprinted by younger basins. The terrains of composite ephemeral ponds and the dune fields are inter-shingled at their margins indicating contemporaneous erosion, deposition, and re-arrangement and possible internal deformation of the surficial deposits. The aggregate of these landform details and their deposits are interpreted as the products of arid, cold climate processes that were common to the mid-Atlantic region during the Last Glacial Maximum. In the Pocomoke valley and its larger tributaries, erosional remnants of sandy flood plains with anastomosing channels indicate the dynamics of former hydrology and sediment load of the watershed that prevailed at the end of the Pleistocene. As the climate warmed and precipitation increased during the transition from late Pleistocene to Holocene, dune fields were stabilized by vegetation, and the stream discharge increased. The increased discharge and greater local relief of streams graded to lower sea levels stimulated down cutting and created the deeply incised valleys out onto the continental shelf. These incised valleys have been filling with fluvial to intertidal deposits that record the rising sea

Advances in the Quantitative Characterization of the Shape of Ash-Sized Pyroclast Populations: Fractal Analyses Coupled to Micro- and Nano-Computed Tomography Techniques

NASA Astrophysics Data System (ADS)

Rausch, J.; Vonlanthen, P.; Grobety, B. H.

2014-12-01

The quantification of shape parameters in pyroclasts is fundamental to infer the dominant type of magma fragmentation (magmatic vs. phreatomagmatic), as well as the behavior of volcanic plumes and clouds in the atmosphere. In a case study aiming at reconstructing the fragmentation mechanisms triggering maar eruptions in two geologically and compositionally distinctive volcanic fields (West and East Eifel, Germany), the shapes of a large number of ash particle contours obtained from SEM images were analyzed by a dilation-based fractal method. Volcanic particle contours are pseudo-fractals showing mostly two distinct slopes in Richardson plots related to the fractal dimensions D1 (small-scale "textural" dimension) and D2 (large-scale "morphological" dimension). The validity of the data obtained from 2D sections was tested by analysing SEM micro-CT slices of one particle cut in different orientations and positions. Results for West Eifel maar particles yield large D1 values (> 1.023), resembling typical values of magmatic particles, which are characterized by a complex shape, especially at small scales. In contrast, the D1 values of ash particles from one East Eifel maar deposit are much smaller, coinciding with the fractal dimensions obtained from phreatomagmatic end-member particles. These quantitative morphological analyses suggest that the studied maar eruptions were triggered by two different fragmentation processes: phreatomagmatic in the East Eifel and magmatic in the West Eifel. The application of fractal analysis to quantitatively characterize the shape of pyroclasts and the linking of fractal dimensions to specific fragmentation processes has turned out to be a very promising tool for studying the fragmentation history of any volcanic eruption. The next step is to extend morphological analysis of volcanic particles to 3 dimensions. SEM micro-CT, already applied in this study, offers the required resolution, but is not suitable for the analysis of a large

Congruent climate-related genecological responses from molecular markers and quantitative traits for western white pine (Pinus monticola)

Treesearch

Bryce A. Richardson; Gerald E. Rehfeldt; Mee-Sook Kim

2009-01-01

Analyses of molecular and quantitative genetic data demonstrate the existence of congruent climate-related patterns in western white pine (Pinus monticola). Two independent studies allowed comparisons of amplified fragment length polymorphism (AFLP) markers with quantitative variation in adaptive traits. Principal component analyses...

Quantitative Susceptibility Mapping after Sports-Related Concussion.

PubMed

Koch, K M; Meier, T B; Karr, R; Nencka, A S; Muftuler, L T; McCrea, M

2018-06-07

Quantitative susceptibility mapping using MR imaging can assess changes in brain tissue structure and composition. This report presents preliminary results demonstrating changes in tissue magnetic susceptibility after sports-related concussion. Longitudinal quantitative susceptibility mapping metrics were produced from imaging data acquired from cohorts of concussed and control football athletes. One hundred thirty-six quantitative susceptibility mapping datasets were analyzed across 3 separate visits (24 hours after injury, 8 days postinjury, and 6 months postinjury). Longitudinal quantitative susceptibility mapping group analyses were performed on stability-thresholded brain tissue compartments and selected subregions. Clinical concussion metrics were also measured longitudinally in both cohorts and compared with the measured quantitative susceptibility mapping. Statistically significant increases in white matter susceptibility were identified in the concussed athlete group during the acute (24 hour) and subacute (day 8) period. These effects were most prominent at the 8-day visit but recovered and showed no significant difference from controls at the 6-month visit. The subcortical gray matter showed no statistically significant group differences. Observed susceptibility changes after concussion appeared to outlast self-reported clinical recovery metrics at a group level. At an individual subject level, susceptibility increases within the white matter showed statistically significant correlations with return-to-play durations. The results of this preliminary investigation suggest that sports-related concussion can induce physiologic changes to brain tissue that can be detected using MR imaging-based magnetic susceptibility estimates. In group analyses, the observed tissue changes appear to persist beyond those detected on clinical outcome assessments and were associated with return-to-play duration after sports-related concussion. © 2018 by American Journal of

Using age of colonizing douglas-fir for the dating of young geomorphic surfaces: a case study

USGS Publications Warehouse

Pierson, Thomas C.

2013-01-01

Dating of many types of young (<500 year), dynamic, geomorphic landforms (e.g. mass-movement erosional tracks and deposits, alluvial terraces, flood plains, etc.) for purposes of hazard assessment and mitigation commonly requires greater dating precision than is available through radiocarbon dating or other methods. Ages of trees growing on landform surfaces have been used in a number of studies to estimate the time of landform creation or surface clearing, but the time lag between surface formation or disturbance and the reestablishment of trees can vary from 1 to more than 200 years (Desloges and Ryder 1990; Frenzen et al. 1988, 2005; Larsen and Bliss 1998; McCarthy and Luckman 1993; Sigafoos and Hendricks 1969; Winter et al. 2002). Appropriate lag times for selected tree species and for particular climatic and altitudinal ranges must be determined for the method to be useful.

Geomorphic change in the Limitrophe reach of the Colorado River in response to the 2014 delta pulse flow, United States and Mexico

USGS Publications Warehouse

Mueller, Erich R.; Schmidt, John C.; Topping, David; Grams, Paul E.

2015-01-01

A pulse of water was released from Morelos Dam into the dry streambed of the Colorado River in its former delta on March 23, 2014. Although small in relation to delta floods of a century ago, this was the first flow to reach the sea in nearly two decades. The pulse flow was significant in that it resulted from an international agreement, Minute 319, which allowed Colorado River water to be used for environmental restoration. Here we present a historical perspective of channel change and the results of geomorphic and sediment transport monitoring during the pulse flow between Yuma, Arizona and San Luis Rio Colorado, Sonora. This reach is known as the Limitrophe, because the river channel is the legal border between the United States and Mexico. Peak discharge of the pulse flow was 120 m3/s at Morelos Dam, but decreased to 71 m3/s at the southern border because of infiltration losses to the dry streambed. In contrast, flood flows in the 1980s and 1990s peaked above 600 m3/s at the southern border, and high flows above 200 m3/s were common. The sustained high flows in the 1980s caused widening and reworking of the river channel downstream through the delta. In the Limitrophe, flooding in 1993 from the Gila River basin dissected the 1980s flood surfaces, and smaller floods in the late 1990s incised the modern “active” channel within these higher surfaces. Field observations show that most geomorphic change during the pulse flow was confined to this pre-pulse, active channel. Relatively little bank erosion was evident, particularly in upstream reaches where vegetation is most dense, but new sandbars formed in areas of flow expansion. Farther downstream, localized bed scour and deposition ranged from 10s of centimeters to more than a meter, and fluvial dunes aggraded the bed in several locations. Measurable suspended-sediment transport occurred throughout the Limitrophe. Sediment concentrations peaked during the rising limb, and suspended sand concentrations suggest

Probing the Gaps: A Synthesis of Well-known and Lesser-known Hydrological Feedbacks Influencing Vegetation Patterning and Long-term Geomorphic Change in Low-gradient Fluvial Landscapes

NASA Astrophysics Data System (ADS)

Larsen, L.; Christensen, A.; Harvey, J. W.; Ma, H.; Newman, S.; Saunders, C.; Twilley, R.

2017-12-01

Emergence of vegetation patterning in fluvial landscapes is a classic example of how autogenic processes can drive long term fluvial and geomorphic adjustments in aquatic ecosystems. Studies elucidating the physics of flow through vegetation patches have produced understanding of how patterning in topography and vegetation commonly emerges and what effect it has on long term geomorphic change. However, with regard to mechanisms underlying pattern existence and resilience, several knowledge gaps remain, including the role of landscape-scale flow-vegetation feedbacks, feedbacks that invoke additional biogeochemical or biological agents, and determination of the relative importance of autogenic processes relative to external drivers. Here we provide a synthesis of the processes over a range of scales known to drive vegetation patterning and sedimentation in low gradient fluvial landscapes, emphasizing recent field and modeling studies in the Everglades, FL and Wax Lake Delta, LA that address these gaps. In the Everglades, while flow routing and sediment redistribution at the patch scale is known to be a primary driver of vegetation pattern emergence, landscape-scale routing of flow, as driven by the landscape's connectivity, can set up positive feedbacks that influence the rate of pattern degradation. Recent flow release experiments reveal that an additional feedback, involving phosphorus concentrations, flow, and floating vegetation communities that are abundant under low phosphorus, low flow conditions further stabilizes the alternative landscape states established through local scale sediment redistribution. Biogeochemistry-vegetation-sediment feedbacks may also be important for geomorphic development of newly emerging landscapes such as the Wax Lake Delta. There, fine sediment deposition shapes hydrogeomorphic zones with vegetation patterns that stimulate the growth of biofilm, while biofilm characteristics override the physical characteristics of vegetation

DEMOGRAPHY AND VIABILITY ANALYSES OF A DIAMONDBACK TERRAPIN POPULATION

EPA Science Inventory

The diamondback terrapin Malaclemys terrapin is a long-lived species with special management requirements, but quantitative analyses to support management are lacking. I analyzed mark-recapture data and constructed an age-classified matrix population model to determine the status...

Hydrologic and Geomorphic Changes Resulting from the Onset of Episodic Glacial Lake Outburst Floods: Colonia River, Chile

NASA Astrophysics Data System (ADS)

Jacquet, J.; McCoy, S. W.; McGrath, D.; Nimick, D.; Friesen, B.; Fahey, M. J.; Leidich, J.; Okuinghttons, J.

2015-12-01

The Colonia river system, draining the eastern edge of the Northern Patagonia Icefield, Chile, has experienced a dramatic shift in flow regime from one characterized by seasonal discharge variability to one dominated by episodic glacial lake outburst floods (GLOFs). We use multi-temporal visible satellite images, high-resolution digital elevation models (DEMs) derived from stereo image pairs, and in situ observations to quantify sediment and water fluxes out of the dammed glacial lake, Lago Cachet Dos (LC2), as well as the concomitant downstream environmental change. GLOFs initiated in April 2008 and have since occurred, on average, two to three times a year. Differencing concurrent gage measurements made on the Baker River upstream and downstream of the confluence with the Colonia river finds peak GLOF discharges of ~ 3,000 m3s-1, which is ~ 4 times the median discharge of the Baker River and over 20 times the median discharge of the Colonia river. During each GLOF, ~ 200,000,000 m3 of water evacuates from the LC2, resulting in erosion of valley-fill sediments and the delta on the upstream end of LC2. Differencing DEMs between April 2008 and February 2014 revealed that ~ 2.5 x 107 m3 of sediment was eroded. Multi-temporal DEM differencing shows that erosion rates were highest initially, with > 20 vertical m of sediment removed between 2008 and 2012, and generally less than 5 m between 2012 and 2014. The downstream Colonia River Sandur also experienced geomorphic changes due to GLOFs. Using Landsat imagery to calculate the normalized difference water index (NDWI), we demonstrate that the Colonia River was in a stable configuration between 1984 and 2008. At the onset of GLOFs in April 2008, a change in channel location began and continued with each subsequent GLOF. Quantification of sediment and water fluxes due to GLOFs in the Colonia river valley provides insight on the geomorphic and environmental changes in river systems experiencing dramatic shifts in flow

Combined metabonomic and quantitative real-time PCR analyses reveal systems metabolic changes in Jurkat T-cells treated with HIV-1 Tat protein.

PubMed

Liao, Wenting; Tan, Guangguo; Zhu, Zhenyu; Chen, Qiuli; Lou, Ziyang; Dong, Xin; Zhang, Wei; Pan, Wei; Chai, Yifeng

2012-11-02

HIV-1 Tat protein is released by infected cells and can affect bystander uninfected T cells and induce numerous biological responses which contribute to its pathogenesis. To elucidate the complex pathogenic mechanism, we conducted a comprehensive investigation on Tat protein-related extracellular and intracellular metabolic changes in Jurkat T-cells using combined gas chromatography-mass spectrometry (GC-MS), reversed-phase liquid chromatography-mass spectrometry (RPLC-MS) and a hydrophilic interaction liquid chromatography-mass spectrometry (HILIC-MS)-based metabonomics approach. Quantitative real-time PCR (qRT-PCR) analyses were further employed to measure expressions of several relevant enzymes together with perturbed metabolic pathways. Combined metabonomic and qRT-PCR analyses revealed that HIV-1 Tat caused significant and comprehensive metabolic changes, as represented by significant changes of 37 metabolites and 10 relevant enzymes in HIV-1 Tat-treated cells. Using MetaboAnalyst 2.0, it was found that 11 pathways (Impact-value >0.10) among the regulated pathways were acutely perturbed, including sphingolipid metabolism, glycine, serine and threonine metabolism, pyruvate metabolism, inositol phosphate metabolism, arginine and proline metabolism, citrate cycle, phenylalanine metabolism, tryptophan metabolism, pentose phosphate pathway, glycerophospholipid metabolism, glycolysis or gluconeogenesis. These results provide metabolic evidence of the complex pathogenic mechanism of HIV-1 Tat protein as a "viral toxin", and would help obligate Tat protein as "an important target" for therapeutic intervention and vaccine development.

Geomorphic threshold conditions for gully erosion in Southwestern Iran (Boushehr-Samal watershed)

NASA Astrophysics Data System (ADS)

Nazari Samani, Aliakbar; Ahmadi, Hassan; Jafari, Mohammad; Boggs, Guy; Ghoddousi, Jamal; Malekian, Arash

2009-06-01

Globally, a large amount of research has been dedicated to furthering our understanding of the factors and mechanisms affecting gully erosion. However, despite the importance of gully erosion in arid and semi arid regions of Iran there has been no comprehensive study of the geomorphic threshold conditions and factors influencing gully initiation. The aim of this article is to investigate the gullying processes and threshold conditions of permanent gullies in an arid region of Iran based upon examination of the slope-area ( S = αA-β) relationship. The data were collected through field and laboratory studies as well as Digital Elevation Model (DEM) analyses. In total, 97 active headcuts were identified across the three study sites and classified based on dominant initiation process including piping, landsliding and overland flow. Soil properties, including EC, SAR and soil texture, as well as landuse practices were found to be the major factors initiating piping and bank gullies. All gullies initiated by landsliding and seepage processes were found to be located in steep areas (28-40% slope) with their distribution further influenced by the lithology and presence of a cohesionless sand layer within the soil profile. An inverse relationship between upslope area ( A) and local slope ( S), in which the α and β coefficients varied, was further investigated based on the dominant gullying process and land use. Gullies occurring in the rangelands that were dominated by overland flow had the strongest relationship while landsliding dominated gullies did not have a statistically significant S- A relationship. In comparison to theoretical and literature based relationships for gully initiation, relatively low values for β were obtained (-0.182 to -0.266), possibly influenced by the presence of seepage and subsurface processes in many gullies. However, this is consistent with other studies in arid regions and may reflect greater potential for gullying in arid zones due to

QTest: Quantitative Testing of Theories of Binary Choice.

PubMed

Regenwetter, Michel; Davis-Stober, Clintin P; Lim, Shiau Hong; Guo, Ying; Popova, Anna; Zwilling, Chris; Cha, Yun-Shil; Messner, William

2014-01-01

The goal of this paper is to make modeling and quantitative testing accessible to behavioral decision researchers interested in substantive questions. We provide a novel, rigorous, yet very general, quantitative diagnostic framework for testing theories of binary choice. This permits the nontechnical scholar to proceed far beyond traditionally rather superficial methods of analysis, and it permits the quantitatively savvy scholar to triage theoretical proposals before investing effort into complex and specialized quantitative analyses. Our theoretical framework links static algebraic decision theory with observed variability in behavioral binary choice data. The paper is supplemented with a custom-designed public-domain statistical analysis package, the QTest software. We illustrate our approach with a quantitative analysis using published laboratory data, including tests of novel versions of "Random Cumulative Prospect Theory." A major asset of the approach is the potential to distinguish decision makers who have a fixed preference and commit errors in observed choices from decision makers who waver in their preferences.

QTest: Quantitative Testing of Theories of Binary Choice

PubMed Central

Regenwetter, Michel; Davis-Stober, Clintin P.; Lim, Shiau Hong; Guo, Ying; Popova, Anna; Zwilling, Chris; Cha, Yun-Shil; Messner, William

2014-01-01

The goal of this paper is to make modeling and quantitative testing accessible to behavioral decision researchers interested in substantive questions. We provide a novel, rigorous, yet very general, quantitative diagnostic framework for testing theories of binary choice. This permits the nontechnical scholar to proceed far beyond traditionally rather superficial methods of analysis, and it permits the quantitatively savvy scholar to triage theoretical proposals before investing effort into complex and specialized quantitative analyses. Our theoretical framework links static algebraic decision theory with observed variability in behavioral binary choice data. The paper is supplemented with a custom-designed public-domain statistical analysis package, the QTest software. We illustrate our approach with a quantitative analysis using published laboratory data, including tests of novel versions of “Random Cumulative Prospect Theory.” A major asset of the approach is the potential to distinguish decision makers who have a fixed preference and commit errors in observed choices from decision makers who waver in their preferences. PMID:24999495

Debris Flows and Water Tracks in Continental Antarctica: Water as a geomorphic agent in a hyperarid polar desert

NASA Astrophysics Data System (ADS)

Hauber, E.; Sassenroth, C.; De Vera, J.-P.; Schmitz, N.; Reiss, D.; Hiesinger, H.; Johnsson, A.

2017-09-01

Most studies using Antarctica as a Mars analogue have focused on the McMurdo Dry Valleys, which are among the coldest and driest places on Earth. However, other ice-free areas in continental Antarctica also display landforms that can inform the study of the possible geomorphic impact of water in a polar desert. Here we present a new analogue site in the interior of the Transantarctic Mountains in Northern Victoria Land. Gullies show unambiguous evidence for debris flows, and water tracks act as shallow subsurface pathways of water on top of the permafrost tale. Both processes are driven by meltwater from glacier ice and snow in an environ-ment which never experiences rainfall and in which the air temperatures probably never exceed 0°C.

Targeted Quantitation of Proteins by Mass Spectrometry

PubMed Central

2013-01-01

Quantitative measurement of proteins is one of the most fundamental analytical tasks in a biochemistry laboratory, but widely used immunochemical methods often have limited specificity and high measurement variation. In this review, we discuss applications of multiple-reaction monitoring (MRM) mass spectrometry, which allows sensitive, precise quantitative analyses of peptides and the proteins from which they are derived. Systematic development of MRM assays is permitted by databases of peptide mass spectra and sequences, software tools for analysis design and data analysis, and rapid evolution of tandem mass spectrometer technology. Key advantages of MRM assays are the ability to target specific peptide sequences, including variants and modified forms, and the capacity for multiplexing that allows analysis of dozens to hundreds of peptides. Different quantitative standardization methods provide options that balance precision, sensitivity, and assay cost. Targeted protein quantitation by MRM and related mass spectrometry methods can advance biochemistry by transforming approaches to protein measurement. PMID:23517332

Targeted quantitation of proteins by mass spectrometry.

PubMed

Liebler, Daniel C; Zimmerman, Lisa J

2013-06-04

Quantitative measurement of proteins is one of the most fundamental analytical tasks in a biochemistry laboratory, but widely used immunochemical methods often have limited specificity and high measurement variation. In this review, we discuss applications of multiple-reaction monitoring (MRM) mass spectrometry, which allows sensitive, precise quantitative analyses of peptides and the proteins from which they are derived. Systematic development of MRM assays is permitted by databases of peptide mass spectra and sequences, software tools for analysis design and data analysis, and rapid evolution of tandem mass spectrometer technology. Key advantages of MRM assays are the ability to target specific peptide sequences, including variants and modified forms, and the capacity for multiplexing that allows analysis of dozens to hundreds of peptides. Different quantitative standardization methods provide options that balance precision, sensitivity, and assay cost. Targeted protein quantitation by MRM and related mass spectrometry methods can advance biochemistry by transforming approaches to protein measurement.

Geomorphic changes in Ras Al-Subiyah area, Kuwait

NASA Astrophysics Data System (ADS)

Al Hurban, A.; El-Gamily, H.; El-Sammak, A.

2008-06-01

The Ras Al-Subiyah area is considered one of the most promising areas in Kuwait for future development. This development will include a new town called Subiyah and its associated infrastructure. This area is also being considered as the location for connection between Boubyan Island, which is now undergoing major development and the Kuwait mainland. The present study investigates the geomorphology of the Ras Al-Sabiyah area in the northern sector of Kuwait. The study area is generally flat, and it is located west of the Jal Az-Zor escarpment. It is bordered on the east by the Khor Al-Sabiyah tidal channel and on the south by Kuwait Bay. The area receives sediments from several sources; currently the most important are aeolian sediments and the deposition of mud delivered through the Khor Al-Sabiyah from the Iraqi marshes. The study area has been subjected to severe environmental changes due to the Gulf wars and the drainage of Iraqi marshes and the associated artificial changes in fluvial system. Twenty-two surface sediments were collected from the Ras Al-Subiyah area. Samples were collected to include the main geomorphologic characteristic features of the study area. Field observations and remote sensing images from 1990 and 2001 were used to produce an updated geomorphologic map for the Ras Al-Subiyah and a map showing geomorphic changes between 1990 and 2001. Grain size of the surface sediment ranges from gravel to medium sand. In general, grain size statistical analysis indicates that most of the areas are composed of two or more classes of sands transported and deposited from different sources including aeolian, sabkhas, river and the bays. The variability in the grain size statistical parameters may be attributed to the complexity of surface morphology as well as the diversity in the type of depositional environment in the Ras Al-Subiyah area. The total area subjected to change during the 12-year period (1990 2001) is about 32 km2 as calculated using GIS

Geomorphic and Structural Evidence for Rolling Hinge Style Deformation in the Footwall of an Active Low Angle Normal Fault, Mai'iu Fault, Woodlark Rift, SE Papua New Guinea

NASA Astrophysics Data System (ADS)

Mizera, M.; Little, T.; Norton, K. P.; Webber, S.; Ellis, S. M.; Oesterle, J.

2016-12-01

While shown to operate in oceanic crust, rolling hinge style deformation remains a debated process in metamorpic core complexes (MCCs) in the continents. The model predicts that unloading and isostatic uplift during slip causes a progressive back-tilting in the upper crust of a normal fault that is more steeply dipping at depth. The Mai'iu Fault in the Woodlark Rift, SE Papua New Guinea, is one of the best-exposed and fastest slipping (probably >7 mm/yr) active low-angle normal faults (LANFs) on Earth. We analysed structural field data from this fault's exhumed slip surface and footwall, together with geomorphic data interpreted from aerial photographs and GeoSAR-derived digital elevation models (gridded at 5-30 m spacing), to evaluate deformational processes affecting the rapidly exhuming, domal-shaped detachment fault. The exhumed fault surface emerges from the ground at the rangefront near sea level with a northward dip of 21°. Up-dip, it is well-preserved, smooth and corrugated, with some fault remnants extending at least 29 km in the slip direction. The surface flattens over the crest of the dome, beyond where it dips S at up to 15°. Windgaps perched on the crestal main divide of the dome, indicate both up-dip tectonic advection and progressive back-tilting of the exhuming fault surface. We infer that slip on a serial array of m-to-km scale up-to-the-north, steeply S-dipping ( 75°) antithetic-sense normal faults accommodated some of the exhumation-related, inelastic bending of the footwall. These geomorphically well expressed faults strike parallel to the main Mai'iu fault at 110.9±5°, have a mean cross-strike spacing of 1520 m, and slip with a consistent up-to-the-north sense of throw ranging from <5 m to 120 m. Apparently the Mai'iu Fault was able to continue slipping despite having to negotiate this added fault-roughness. We interpret the antithetic faulting to result from bending stresses, and to provide the first clear examples of rolling hinge

Quantitative Analysis of Repertoire-Scale Immunoglobulin Properties in Vaccine-Induced B-Cell Responses

DTIC Science & Technology

2017-05-10

repertoire-wide properties. Finally, through 75 the use of appropriate statistical analyses, the repertoire profiles can be quantitatively compared and 76...cell response to eVLP and 503 quantitatively compare GC B-cell repertoires from immunization conditions. We partitioned the 504 resulting clonotype... Quantitative analysis of repertoire-scale immunoglobulin properties in vaccine-induced B-cell responses Ilja V. Khavrutskii1, Sidhartha Chaudhury*1

Data mining of external and internal forcing of fluvial systems for catchment management: A case study on the Red River (Song Hong), Vietnam

NASA Astrophysics Data System (ADS)

Schmitt, Rafael; Bizzi, Simone; Castelletti, Andrea

2013-04-01

The understanding of river hydromorphological processes has been recognized in the last decades as a priority of modern catchment management, since interactions of natural and anthropogenic forces within the catchment drives fluvial geomorphic processes, which shape physical habitat, affect river infrastructures and influence freshwater ecological processes. The characterization of river hydromorphological features is commonly location and time specific and highly resource demanding. Therefore, its routine application at regional or national scales and the assessment of spatio-temporal changes as reaction to internal and external disturbances is rarely feasible at present. Information ranging from recently available high-resolution remote-sensing data (such as DEM), historic data such as land use maps or aerial photographs and monitoring networks of flow and rainfall, open up novel and promising capacity for basin-wide understanding of dominant hydromorphological drivers. Analysing the resulting multiparametric data sets in their temporal and spatial dimensions requires sophisticated data mining tools to exploit the potential of this information. We propose a novel framework that allows for the quantitative assessment of multiparametric data sets to identify classes of channel reaches characterized by similar geomorphic drivers using remote-sensing data and monitoring networks available in the catchment. This generic framework was applied to the Red River (Song Hong) basin, the second largest basin (87,800 sq.km) in Vietnam. Besides its economic importance, the river is experiencing severe river bed incisions due to recent construction of new dams in the upstream part of the catchment and sand mining in the surrounding of the capital city Hanoi. In this context, characterized by an high development rate, current efforts to increase water productivity and minimize impacts on the fluvial systems by means of focused infrastructure and management measures require a

Shedding quantitative fluorescence light on novel regulatory mechanisms in skeletal biomedicine and biodentistry.

PubMed

Lee, Ji-Won; Iimura, Tadahiro

2017-02-01

Digitalized fluorescence images contain numerical information such as color (wavelength), fluorescence intensity and spatial position. However, quantitative analyses of acquired data and their validation remained to be established. Our research group has applied quantitative fluorescence imaging on tissue sections and uncovered novel findings in skeletal biomedicine and biodentistry. This review paper includes a brief background of quantitative fluorescence imaging and discusses practical applications by introducing our previous research. Finally, the future perspectives of quantitative fluorescence imaging are discussed.

Quantitative measures for redox signaling.

PubMed

Pillay, Ché S; Eagling, Beatrice D; Driscoll, Scott R E; Rohwer, Johann M

2016-07-01

Redox signaling is now recognized as an important regulatory mechanism for a number of cellular processes including the antioxidant response, phosphokinase signal transduction and redox metabolism. While there has been considerable progress in identifying the cellular machinery involved in redox signaling, quantitative measures of redox signals have been lacking, limiting efforts aimed at understanding and comparing redox signaling under normoxic and pathogenic conditions. Here we have outlined some of the accepted principles for redox signaling, including the description of hydrogen peroxide as a signaling molecule and the role of kinetics in conferring specificity to these signaling events. Based on these principles, we then develop a working definition for redox signaling and review a number of quantitative methods that have been employed to describe signaling in other systems. Using computational modeling and published data, we show how time- and concentration- dependent analyses, in particular, could be used to quantitatively describe redox signaling and therefore provide important insights into the functional organization of redox networks. Finally, we consider some of the key challenges with implementing these methods. Copyright © 2016 Elsevier Inc. All rights reserved.

Active faulting Vs other surface displacing complex geomorphic phenomena. Case studies from a tectonically active area, Abruzzi Region, central Apennines, Italy

NASA Astrophysics Data System (ADS)

Lo Sardo, Lorenzo; Gori, Stefano; Falcucci, Emanuela; Saroli, Michele; Moro, Marco; Galadini, Fabrizio; Lancia, Michele; Fubelli, Giandomenico; Pezzo, Giuseppe

2016-04-01

How can be univocally inferred the genesis of a linear surface scarp as the result of an active and capable fault (FAC) in tectonically active regions? Or, conversely, how it is possible to exclude that a scarp is the result of a capable fault activation? Trying to unravel this open questions, we show two ambiguous case studies about the problem of the identification of active and capable faults in a tectonically active area just based on the presence of supposed fault scarps at surface. The selected cases are located in the area comprised between the Middle Aterno Valley Fault (MAVF) and the Campo Imperatore Plain (Abruzzi Region, central Apennines), nearby the epicentral area of the April 6th, 2009 L'Aquila earthquake. In particular, the two case studies analysed are located in a region characterized by a widespread Quaternary faults and by several linear scarps: the case studies of (i) Prata D'Ansidonia area and (ii) Santo Stefano di Sessanio area. To assess the origin and the state of activity of the investigated geomorphic features, we applied a classical geological and geomorphological approach, based on the analysis of the available literature, the interpretation of the aerial photographs, field surveying and classical paleoseismological approach, the latter consisting in digging excavations across the analysed scarps. These analysis were then integrated by morphometrical analyses. As for case (i), we focused on determining the geomorphic "meaning" of linear scarps carved onto fluvial-deltaic conglomerates (dated to the Early Pleistocene; Bertini and Bosi, 1993), up to 3 meters high and up to 1,5 km long, that border a narrow, elongated and flat-bottom depressions, filled by colluvial deposits. These features groove the paleo-landsurface of Valle Daria (Bosi and Bertini, 1970), wide landsurface located between Barisciano and Prata D'Ansidonia. Entwining paleoseismological trenching with geophysical analyses (GPR, ERT and microgravimetrical prospections), it

Biogeomorphic feedbacks in the Southwestern USA: exploring the mechanisms of geomorphic change and the effectiveness of mitigation measures

NASA Astrophysics Data System (ADS)

Dean, D. J.; Diehl, R. M.; Topping, D. J.

2017-12-01

Water development and the proliferation of riparian plants have resulted in extensive geomorphic change to rivers worldwide. In many dryland rivers of the Southwestern U.S., these phenomena have contributed to conditions of sediment accumulation leading to channel narrowing, floodplain aggradation, and loss of fluvial habitat. Using a series of field and laboratory measurements, we demonstrate how biogeomorphic feedbacks have promoted channel contraction. Experimental evidence shows that vegetation can have a substantial effect on local hydraulics and sediment-transport fields, depending on plant morphology, but that the impact of plants on physical processes is mediated by flow and sediment supply. In the Little Colorado River in Arizona, water management practices, variations in climate/hydrology, and the resultant expansion of riparian vegetation have resulted in channel narrowing, increases in sinuosity and drag, and decreases in channel slope. These changes have created a biogeomorphic feedback by disrupting downstream flood conveyance; flood travel time has increased resulting in flow attenuation, declines in peak discharge, and continued sediment accumulation at large scales. In the Rio Grande in Big Bend National Park, channel narrowing and floodplain aggradation has led to the loss of channel capacity and an increase in overbank flooding even though discharges have declined. Vegetation expansion into channel environments has exacerbated this condition by reducing channel-margin flow velocities, increasing sediment deposition, and reducing bank erosion thereby creating a biogeomorphic feedback leading to additional narrowing. An understanding of the mechanisms that have driven geomorphic changes in river channels may help to formulate effective mitigation measures. Vegetation removal can have local and reach-scale effects on channel morphology; however, the effectiveness of these actions is dependent upon many variables including the flow regime and

Mapping, Monitoring, and Modeling Geomorphic Processes to Identify Sources of Anthropogenic Sediment Pollution in West Maui, Hawai'i

NASA Astrophysics Data System (ADS)

Cerovski-Darriau, C.; Stock, J. D.; Winans, W. R.

2016-12-01

Episodic storm runoff in West Maui (Hawai'i) brings plumes of terrestrially-sourced fine sediment to the nearshore ocean environment, degrading coral reef ecosystems. The sediment pollution sources were largely unknown, though suspected to be due to modern human disturbance of the landscape, and initially assumed to be from visibly obvious exposed soil on agricultural fields and unimproved roads. To determine the sediment sources and estimate a sediment budget for the West Maui watersheds, we mapped the geomorphic processes in the field and from DEMs and orthoimagery, monitored erosion rates in the field, and modeled the sediment flux using the mapped processes and corresponding rates. We found the primary source of fine sands, silts and clays to be previously unidentified fill terraces along the stream bed. These terraces, formed during legacy agricultural activity, are the banks along 40-70% of the streams where the channels intersect human-modified landscapes. Monitoring over the last year shows that a few storms erode the fill terraces 10-20 mm annually, contributing up to 100s of tonnes of sediment per catchment. Compared to the average long-term, geologic erosion rate of 0.03 mm/yr, these fill terraces alone increase the suspended sediment flux to the coral reefs by 50-90%. Stakeholders can use our resulting geomorphic process map and sediment budget to inform the location and type of mitigation effort needed to limit terrestrial sediment pollution. We compare our mapping, monitoring, and modeling (M3) approach to NOAA's OpenNSPECT model. OpenNSPECT uses empirical hydrologic and soil erosion models paired with land cover data to compare the spatially distributed sediment yield from different land-use scenarios. We determine the relative effectiveness of calculating a baseline watershed sediment yield from each approach, and the utility of calibrating OpenNSEPCT with M3 results to better forecast future sediment yields from land-use or climate change scenarios.

Geomorphic Parameters for Developing a Hydrologic Model to Infer Holocene Climate Variability, Middle Snake River near Bliss, Idaho

NASA Astrophysics Data System (ADS)

Bullard, T. F.; Bacon, S. N.; Kimball, V. R.

2015-12-01

The geomorphology and stratigraphy preserved in a canyon reach of the Middle Snake River provide model parameter constraints for estimating Holocene paleohydrology. Channel constrictions, which acted as hydraulic weirs throughout the Holocene, were created in this reach by the Bonneville Flood (~17.5 ka) that left very large (>10 m) slabs of basalt and 2-3 m diameter boulder deposits near the canyon floor. Post-Bonneville Flood landforms and deposits that formed during the Holocene are situated less than ~30 m above river level (arl) in this reach and include fluvial and boulder terraces, alluvial fans, and incised tributary alluvial units. Relative topographic position of these geomorphic features, cross-cutting relations, multiple buried soils, depositional and erosional contacts, and radiocarbon dates from terraces (Qt) and alluvial fans provide a geomorphic and stratigraphic framework and a Holocene chronology for this area. The relative stratigraphic position of a massive silty sand that overlies Bonneville Flood gravel in Qt5 (~20 m arl) and Qt4 (~10 m arl) deposits and comprises all of Qt3 (~5 m arl) deposits indicates changes in Holocene discharge; longitudinal profiles of fluvial terraces graded to hydraulic constrictions provide reasonable estimates of paleo-stage. Fifteen radiocarbon dates yielded ages of ~8670 and ~3500 cal yr BP for Qt4 deposits and ~1100 and ~100 cal yr BP for Qt3 deposits and help define periods of episodic cutting and filling. Timing of Qt4 and Qt3 cut-and-fill episodes and alluvial fan formation correlates well with Holocene global and regional paleoclimate events inferred from Great Basin lake histories including wet periods from ~9.0 to 8.0 ka and ~4.2 to 2.5 ka, the Medieval Climatic Anomaly (~1.2 to 0.8 ka), and the Little Ice Age (~0.3 to 0.6 ka). The fluvial geomorphology documented in this study will be used to develop a watershed-scale hydrologic model to infer paleoprecipitation in the region during the Holocene.

Geomorphic effects of rural-to-urban land use conversion on three streams in the Central Redbed Plains of Oklahoma

NASA Astrophysics Data System (ADS)

Kang, Ranbir S.; Marston, Richard A.

2006-09-01

This research evaluates the impact of rural-to-urban land use conversion on channel morphology and riparian vegetation for three streams in the Central Redbed Plains geomorphic province (central Great Plains ecoregion) of Oklahoma. The Deep Fork Creek watershed is largely urbanized; the Skeleton Creek watershed is largely rural; and the Stillwater Creek watershed is experiencing a rapid transition from rural to urban land cover. Each channel was divided into reaches based on tributary junctions, sinuosity, and slope. Field surveys were conducted at transects in a total of 90 reaches, including measurements of channel units, channel cross-section at bankfull stage, and riparian vegetation. Historical aerial photographs were available for only Stillwater Creek watershed, which were used to document land cover in this watershed, especially changes in the extent of urban areas (impervious cover). The three streams have very low gradients (< 0.001), width-to-depth ratios < 10, and cohesive channel banks, but have incised into red Permian shales and sandstone. The riparian vegetation is dominated by cottonwoods, ash, and elm trees that provide a dense root mat on stream banks where the riparian vegetation is intact. Channels increased in width and depth in the downstream direction as is normally expected, but the substrate materials and channel units remained unchanged. Statistical analyses demonstrated that urbanization did not explain spatial patterns of changes in any variables. These three channels in the central Redbed Plains are responding as flumes during peak flows, funneling runoff and the wash-load sediment downstream in major runoff events without any effect on channel dimensions. Therefore, local geological conditions (similar bedrock, cohesive substrates and similar riparian vegetation) are mitigating the effects of urbanization.

Design and analysis issues in quantitative proteomics studies.

PubMed

Karp, Natasha A; Lilley, Kathryn S

2007-09-01

Quantitative proteomics is the comparison of distinct proteomes which enables the identification of protein species which exhibit changes in expression or post-translational state in response to a given stimulus. Many different quantitative techniques are being utilized and generate large datasets. Independent of the technique used, these large datasets need robust data analysis to ensure valid conclusions are drawn from such studies. Approaches to address the problems that arise with large datasets are discussed to give insight into the types of statistical analyses of data appropriate for the various experimental strategies that can be employed by quantitative proteomic studies. This review also highlights the importance of employing a robust experimental design and highlights various issues surrounding the design of experiments. The concepts and examples discussed within will show how robust design and analysis will lead to confident results that will ensure quantitative proteomics delivers.

Modeling post-fire hydro-geomorphic recovery in the Waldo Canyon Fire

NASA Astrophysics Data System (ADS)

Kinoshita, Alicia; Nourbakhshbeidokhti, Samira; Chin, Anne

2016-04-01

Wildfire can have significant impacts on watershed hydrology and geomorphology by changing soil properties and removing vegetation, often increasing runoff and soil erosion and deposition, debris flows, and flooding. Watershed systems may take several years or longer to recover. During this time, post-fire channel changes have the potential to alter hydraulics that influence characteristics such as time of concentration and increase time to peak flow, flow capacity, and velocity. Using the case of the 2012 Waldo Canyon Fire in Colorado (USA), this research will leverage field-based surveys and terrestrial Light Detection and Ranging (LiDAR) data to parameterize KINEROS2 (KINematic runoff and EROSion), an event oriented, physically-based watershed runoff and erosion model. We will use the Automated Geospatial Watershed Assessment (AGWA) tool, which is a GIS-based hydrologic modeling tool that uses commonly available GIS data layers to parameterize, execute, and spatially visualize runoff and sediment yield for watersheds impacted by the Waldo Canyon Fire. Specifically, two models are developed, an unburned (Bear Creek) and burned (Williams) watershed. The models will simulate burn severity and treatment conditions. Field data will be used to validate the burned watersheds for pre- and post-fire changes in infiltration, runoff, peak flow, sediment yield, and sediment discharge. Spatial modeling will provide insight into post-fire patterns for varying treatment, burn severity, and climate scenarios. Results will also provide post-fire managers with improved hydro-geomorphic modeling and prediction tools for water resources management and mitigation efforts.

Conceptual frameworks, geomorphic interpretation and storytelling: Tales from Lockyer Creek , Australia.

NASA Astrophysics Data System (ADS)

Croke, Jacky; Phillips, Jonathan; Van Dyke, Chris

2017-04-01

Earth science knowledge and insight begins with case studies, and theories should be derived from and ultimately evaluated against empirical, case study evidence. However, isolated case studies not linked conceptually to other locations or embedded within a broader framework are often of limited use beyond the study site. Geomorphic evidence and phenomena may be interpreted using a variety of conceptual frameworks (theories, models, laws, methodologies, etc.). The evidence may be, or at least appear to be, consistent with multiple frameworks, even when those constructs are derived from entirely different assumptions or frames of reference. Thus different interpretations and stories can be derived from the same evidence. Our purpose here is to illustrate this phenomenon via a case study from Lockyer Creek, southeast Queensland, Australia. Lockyer Creek is fast becoming one of Australia's most studied catchments with a wealth of data emerging following two extreme flood events in 2011 and 2013. Whilst the initial objective of the Big Flood project was to provide information on the frequency and magnitude of these extreme events, in essence the project revealed a rich 'story' of river evolution and adjustment which at first glance did not appear to 'fit' many established conceptual frameworks and theories. This presentation tells the tale of Lockyer Creek as it relates to selected key conceptual frameworks and importantly how this information can then be used for more effective catchment and flood management.

Preparing for uncertainty: toward managing fluvial geomorphic assessment of Massachusetts rivers

NASA Astrophysics Data System (ADS)

Hatch, C. E.; Mabee, S. B.; Slovin, N. B.; Vogel, E.

2014-12-01

Climate scientists predict (and have already observed) that in the Northeastern U.S., individual storms may be more intense, and that there will be more precipitation on an annual basis. In steep post-glacial terrain, erosion caused by floodwaters is the largest destructive force during high-intensity storm events, and the force most likely to drive major morphological changes to riverbanks and channels. What remains uncertain is which watersheds or river reaches may be subjected to increased damage from more intense storms. This presents a challenge for scientific outreach and management. Many New England states have developed systems for delineating the potentially geomorphically active zones adjacent to rivers, and Vermont has an excellent assessment and land use management system informed by process-based fluvial geomorphologic science. To date, however, Massachusetts has neither. In this project we survey existing protocols for accurately predicting locations of fluvial erosion hazard, including using LiDAR and DEM models to extract basic morphologic metrics. Particularly in states or landscapes with high river density, and during a time of tight fiscal constraints, managers need automated methods that require a minimum of expert input. We test these methods in the Deerfield river watershed in Massachusetts and Vermont, and integrate our knowledge with that of the basin's agricultural and floodplain stakeholders. The results will inform development of a comprehensive river assessment and land use management system for the state of Massachusetts.

Assessing the reporting of categorised quantitative variables in observational epidemiological studies.

PubMed

Mabikwa, Onkabetse V; Greenwood, Darren C; Baxter, Paul D; Fleming, Sarah J

2017-03-14

One aspect to consider when reporting results of observational studies in epidemiology is how quantitative risk factors are analysed. The STROBE (Strengthening the Reporting of Observational Studies in Epidemiology) guidelines recommend that researchers describe how they handle quantitative variables when analysing data. For categorised quantitative variables, the authors are required to provide reasons and justifications informing their practice. We investigated and assessed the practices and reporting of categorised quantitative variables in epidemiology. The assessment was based on five medical journals that publish epidemiological research. Observational studies published between April and June 2015 and investigating the relationships between quantitative exposures (or risk factors) and the outcomes were considered for assessment. A standard form was used to collect the data, and the reporting patterns amongst eligible studies were quantified and described. Out of 61 articles assessed for eligibility, 23 observational studies were included in the assessment. Categorisation of quantitative exposures occurred in 61% of these studies and reasons informing the practice were rarely provided. Only one article explained the choice of categorisation in the analysis. Transformation of quantitative exposures into four or five groups was common and dominant amongst studies using equally spaced categories. Dichotomisation was not popular; the practice featured in one article. Overall, the majority (86%) of the studies preferred ordered or arbitrary group categories. Other criterions used to decide categorical boundaries were based on established guidelines such as consensus statements and WHO standards. Categorisation of continuous variables remains a dominant practice in epidemiological studies. The reasons informing the practice of categorisation within published work are limited and remain unknown in most articles. The existing STROBE guidelines could provide stronger

Good practices for quantitative bias analysis.

PubMed

Lash, Timothy L; Fox, Matthew P; MacLehose, Richard F; Maldonado, George; McCandless, Lawrence C; Greenland, Sander

2014-12-01

Quantitative bias analysis serves several objectives in epidemiological research. First, it provides a quantitative estimate of the direction, magnitude and uncertainty arising from systematic errors. Second, the acts of identifying sources of systematic error, writing down models to quantify them, assigning values to the bias parameters and interpreting the results combat the human tendency towards overconfidence in research results, syntheses and critiques and the inferences that rest upon them. Finally, by suggesting aspects that dominate uncertainty in a particular research result or topic area, bias analysis can guide efficient allocation of sparse research resources. The fundamental methods of bias analyses have been known for decades, and there have been calls for more widespread use for nearly as long. There was a time when some believed that bias analyses were rarely undertaken because the methods were not widely known and because automated computing tools were not readily available to implement the methods. These shortcomings have been largely resolved. We must, therefore, contemplate other barriers to implementation. One possibility is that practitioners avoid the analyses because they lack confidence in the practice of bias analysis. The purpose of this paper is therefore to describe what we view as good practices for applying quantitative bias analysis to epidemiological data, directed towards those familiar with the methods. We focus on answering questions often posed to those of us who advocate incorporation of bias analysis methods into teaching and research. These include the following. When is bias analysis practical and productive? How does one select the biases that ought to be addressed? How does one select a method to model biases? How does one assign values to the parameters of a bias model? How does one present and interpret a bias analysis?. We hope that our guide to good practices for conducting and presenting bias analyses will encourage

Hydraulic and Geomorphic Assessment of the Merced River and Historic Bridges in Eastern Yosemite Valley, Yosemite National Park, California: Sacramento, California

USGS Publications Warehouse

Minear, J. Toby; Wright, Scott A.

2013-01-01

scenarios indicate a reduction in average velocity at the bridge sites for the range of flows by approximately 23-38 percent (Sugar Pine Bridge), 32-42 percent (Ahwahnee Bridge), and 33-39 percent (Stoneman Bridge), though a side channel of concern to YNP management did not appear to be substantially affected by the removal scenarios. In comparison to the historical data, the FaSTMECH results suggest that flows for present-day conditions do not inundate the floodplain until between the 50- and 20-percent annual exceedance probability flood, whereas historically, a large portion of the floodplain was inundated during the 50-percent annual exceedance probability flood. Modeled maximum velocities in the present-day channel commonly exceed 2.0 m s-1, whereas with the historical scenario, modeled maximum in-channel velocities rarely exceeded 2.0 m s-1. The geomorphic analysis of the magnitude-frequency of bedload and suspended-sediment transport suggests that at the important Tenaya Bar site, the majority of bed sediment is mobile during most snowmelt-dominated floods. In contrast to sediment transport capacity, the analysis of repeat cross-sections suggests that bedload sediment supply into the eastern Yosemite Valley may be quite different between rain-on-snow floods and snowmelt-dominated floods, potentially with most sediment supply occurring during rain-on-snow floods, such as the 1997 flood. In contrast, the magnitude-frequency analysis of bedload and suspended-sediment transport suggests that long-term bedload sediment transport is likely dominated by snowmelt floods, and suspended-sediment transport is relatively low compared to bedload transport. Obtaining measured velocity data throughout the study reach would aid in model calibration, and thus would improve confidence in model results. Improved confidence in the model velocity results would allow additional substantial analyses of reach-scale effects of the planning scenarios and would enable the development of

Less label, more free: approaches in label-free quantitative mass spectrometry.

PubMed

Neilson, Karlie A; Ali, Naveid A; Muralidharan, Sridevi; Mirzaei, Mehdi; Mariani, Michael; Assadourian, Gariné; Lee, Albert; van Sluyter, Steven C; Haynes, Paul A

2011-02-01

In this review we examine techniques, software, and statistical analyses used in label-free quantitative proteomics studies for area under the curve and spectral counting approaches. Recent advances in the field are discussed in an order that reflects a logical workflow design. Examples of studies that follow this design are presented to highlight the requirement for statistical assessment and further experiments to validate results from label-free quantitation. Limitations of label-free approaches are considered, label-free approaches are compared with labelling techniques, and forward-looking applications for label-free quantitative data are presented. We conclude that label-free quantitative proteomics is a reliable, versatile, and cost-effective alternative to labelled quantitation. Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Geomorphic analysis of the river response to sedimentation downstream of Mount Rainier, Washington

USGS Publications Warehouse

Czuba, Jonathan A.; Magirl, Christopher S.; Czuba, Christiana R.; Curran, Christopher A.; Johnson, Kenneth H.; Olsen, Theresa D.; Kimball, Halley K.; Gish, Casey C.

2012-01-01

A study of the geomorphology of rivers draining Mount Rainier, Washington, was completed to identify sources of sediment to the river network; to identify important processes in the sediment delivery system; to assess current sediment loads in rivers draining Mount Rainier; to evaluate if there were trends in streamflow or sediment load since the early 20th century; and to assess how rates of sedimentation might continue into the future using published climate-change scenarios. Rivers draining Mount Rainier carry heavy sediment loads sourced primarily from the volcano that cause acute aggradation in deposition reaches as far away as the Puget Lowland. Calculated yields ranged from 2,000 tonnes per square kilometer per year [(tonnes/km2)/yr] on the upper Nisqually River to 350 (tonnes/km2)/yr on the lower Puyallup River, notably larger than sediment yields of 50–200 (tonnes/km2)/yr typical for other Cascade Range rivers. These rivers can be assumed to be in a general state of sediment surplus. As a result, future aggradation rates will be largely influenced by the underlying hydrology carrying sediment downstream. The active-channel width of rivers directly draining Mount Rainier in 2009, used as a proxy for sediment released from Mount Rainier, changed little between 1965 and 1994 reflecting a climatic period that was relatively quiet hydrogeomorphically. From 1994 to 2009, a marked increase in geomorphic disturbance caused the active channels in many river reaches to widen. Comparing active-channel widths of glacier-draining rivers in 2009 to the distance of glacier retreat between 1913 and 1994 showed no correlation, suggesting that geomorphic disturbance in river reaches directly downstream of glaciers is not strongly governed by the degree of glacial retreat. In contrast, there was a correlation between active-channel width and the percentage of superglacier debris mantling the glacier, as measured in 1971. A conceptual model of sediment delivery processes

A Methodology for Conducting Integrative Mixed Methods Research and Data Analyses

PubMed Central

Castro, Felipe González; Kellison, Joshua G.; Boyd, Stephen J.; Kopak, Albert

2011-01-01

Mixed methods research has gained visibility within the last few years, although limitations persist regarding the scientific caliber of certain mixed methods research designs and methods. The need exists for rigorous mixed methods designs that integrate various data analytic procedures for a seamless transfer of evidence across qualitative and quantitative modalities. Such designs can offer the strength of confirmatory results drawn from quantitative multivariate analyses, along with “deep structure” explanatory descriptions as drawn from qualitative analyses. This article presents evidence generated from over a decade of pilot research in developing an integrative mixed methods methodology. It presents a conceptual framework and methodological and data analytic procedures for conducting mixed methods research studies, and it also presents illustrative examples from the authors' ongoing integrative mixed methods research studies. PMID:22167325

Using Qualitative Metasummary to Synthesize Qualitative and Quantitative Descriptive Findings

PubMed Central

Sandelowski, Margarete; Barroso, Julie; Voils, Corrine I.

2008-01-01

The new imperative in the health disciplines to be more methodologically inclusive has generated a growing interest in mixed research synthesis, or the integration of qualitative and quantitative research findings. Qualitative metasummary is a quantitatively oriented aggregation of qualitative findings originally developed to accommodate the distinctive features of qualitative surveys. Yet these findings are similar in form and mode of production to the descriptive findings researchers often present in addition to the results of bivariate and multivariable analyses. Qualitative metasummary, which includes the extraction, grouping, and formatting of findings, and the calculation of frequency and intensity effect sizes, can be used to produce mixed research syntheses and to conduct a posteriori analyses of the relationship between reports and findings. PMID:17243111

Mapping of quantitative trait loci controlling adaptive traits in coastal Douglas-fir

Treesearch

Nicholas C. Wheeler; Kathleen D. Jermstad; Konstantin V. Krutovsky; Sally N. Aitken; Glenn T. Howe; Jodie Krakowski; David B. Neale

2005-01-01

Quantitative trait locus (QTL) analyses are used by geneticists to characterize the genetic architecture of quantitative traits, provide a foundation for marker-aided-selection (MAS), and provide a framework for positional selection of candidate genes. The most useful QTL for breeding applications are those that have been verified in time, space, and/or genetic...

Geomorphic influences on the contribution of vegetation to soil C accumulation and accretion in Spartina alterniflora marshes

NASA Astrophysics Data System (ADS)

Elsey-Quirk, Tracy; Unger, Viktoria

2018-01-01

sedimentation rates and low biomass signify the potential contribution of allochthonous C and the preservation of labile C. Overall, our findings illustrate the importance of sediment supply to marshes both for promoting positive plant-C accumulation-accretion feedbacks in geomorphic settings where mineral sediment is limiting and for promoting allochthonous inputs and preservation of labile C leading to high C accumulation and accretion rates in geomorphic settings where sediment supply is abundant.

Challenge in Enhancing the Teaching and Learning of Variable Measurements in Quantitative Research

ERIC Educational Resources Information Center

Kee, Chang Peng; Osman, Kamisah; Ahmad, Fauziah

2013-01-01

Statistical analysis is one component that cannot be avoided in a quantitative research. Initial observations noted that students in higher education institution faced difficulty analysing quantitative data which were attributed to the confusions of various variable measurements. This paper aims to compare the outcomes of two approaches applied in…

Performance Metrics for Liquid Chromatography-Tandem Mass Spectrometry Systems in Proteomics Analyses*

PubMed Central

Rudnick, Paul A.; Clauser, Karl R.; Kilpatrick, Lisa E.; Tchekhovskoi, Dmitrii V.; Neta, Pedatsur; Blonder, Nikša; Billheimer, Dean D.; Blackman, Ronald K.; Bunk, David M.; Cardasis, Helene L.; Ham, Amy-Joan L.; Jaffe, Jacob D.; Kinsinger, Christopher R.; Mesri, Mehdi; Neubert, Thomas A.; Schilling, Birgit; Tabb, David L.; Tegeler, Tony J.; Vega-Montoto, Lorenzo; Variyath, Asokan Mulayath; Wang, Mu; Wang, Pei; Whiteaker, Jeffrey R.; Zimmerman, Lisa J.; Carr, Steven A.; Fisher, Susan J.; Gibson, Bradford W.; Paulovich, Amanda G.; Regnier, Fred E.; Rodriguez, Henry; Spiegelman, Cliff; Tempst, Paul; Liebler, Daniel C.; Stein, Stephen E.

2010-01-01

A major unmet need in LC-MS/MS-based proteomics analyses is a set of tools for quantitative assessment of system performance and evaluation of technical variability. Here we describe 46 system performance metrics for monitoring chromatographic performance, electrospray source stability, MS1 and MS2 signals, dynamic sampling of ions for MS/MS, and peptide identification. Applied to data sets from replicate LC-MS/MS analyses, these metrics displayed consistent, reasonable responses to controlled perturbations. The metrics typically displayed variations less than 10% and thus can reveal even subtle differences in performance of system components. Analyses of data from interlaboratory studies conducted under a common standard operating procedure identified outlier data and provided clues to specific causes. Moreover, interlaboratory variation reflected by the metrics indicates which system components vary the most between laboratories. Application of these metrics enables rational, quantitative quality assessment for proteomics and other LC-MS/MS analytical applications. PMID:19837981

Coastal system mapping: a new approach to formalising and conceptualising the connectivity of large-scale coastal systems

NASA Astrophysics Data System (ADS)

French, J.; Burningham, H.; Whitehouse, R.

2010-12-01

pertaining to specific locations to be embedded in system maps. Exported maps can be analysed separately to quantify abundance of system components and their scales of interaction. Our approach is demonstrated for different scales and geomorphic contexts in the UK, including Alnmouth Bay (NE England; 15km), Lowestoft to Felixstowe (E England; 73km) and Cardigan Bay (Wales; 267km). Aerial imagery provides the primary basis for identifying features and elements and likely modes of interaction. This interpretation is then checked against relevant research literature and site data. Coastal system mapping is a kind of knowledge formalisation that generalises disparate sources of information (‘plain data’) into usable knowledge. Consensus-derived system maps are highly effective as a catalyst for structured discussion of geomorphic system behaviour and its implications for coastal management. They also function as a repository for results from quantitative analyses and modelling.

A roughness-corrected index of relative bed stability for regional stream surveys

EPA Science Inventory

Quantitative regional assessments of streambed sedimentation and its likely causes are hampered because field investigations typically lack the requisite sample size, measurements, or precision for sound geomorphic and statistical interpretation. We adapted an index of relative b...

Underutilisation of routinely collected data in the HIV programme in Zambia: a review of quantitatively analysed peer-reviewed articles.

PubMed

Munthali, Tendai; Musonda, Patrick; Mee, Paul; Gumede, Sehlulekile; Schaap, Ab; Mwinga, Alwyn; Phiri, Caroline; Kapata, Nathan; Michelo, Charles; Todd, Jim

2017-06-13

The extent to which routinely collected HIV data from Zambia has been used in peer-reviewed published articles remains unexplored. This paper is an analysis of peer-reviewed articles that utilised routinely collected HIV data from Zambia within six programme areas from 2004 to 2014. Articles on HIV, published in English, listed in the Directory of open access journals, African Journals Online, Google scholar, and PubMed were reviewed. Only articles from peer-reviewed journals, that utilised routinely collected data and included quantitative data analysis methods were included. Multi-country studies involving Zambia and another country, where the specific results for Zambia were not reported, as well as clinical trials and intervention studies that did not take place under routine care conditions were excluded, although community trials which referred patients to the routine clinics were included. Independent extraction was conducted using a predesigned data collection form. Pooled analysis was not possible due to diversity in topics reviewed. A total of 69 articles were extracted for review. Of these, 7 were excluded. From the 62 articles reviewed, 39 focused on HIV treatment and retention in care, 15 addressed prevention of mother-to-child transmission, 4 assessed social behavioural change, and 4 reported on voluntary counselling and testing. In our search, no articles were found on condom programming or voluntary male medical circumcision. The most common outcome measures reported were CD4+ count, clinical failure or mortality. The population analysed was children in 13 articles, women in 16 articles, and both adult men and women in 33 articles. During the 10 year period of review, only 62 articles were published analysing routinely collected HIV data in Zambia. Serious consideration needs to be made to maximise the utility of routinely collected data, and to benefit from the funds and efforts to collect these data. This could be achieved with government support

Quaternary ecological and geomorphic changes associated with rainfall events in presently semi-arid northeastern Brazil

NASA Astrophysics Data System (ADS)

Auler, Augusto S.; Wang, Xianfeng; Edwards, R. Lawrence; Cheng, Hai; Cristalli, Patrícia S.; Smart, Peter L.; Richards, David A.

2004-10-01

Several geomorphic features and palaeobiotic remains in now semi-arid northeastern Brazil indicate major palaeoenvironmental changes during past periods of increased rainfall. 230Th mass spectrometric ages of speleothems and travertines have allowed the determination of the timing and duration of wetter than present conditions. The data demonstrate that wet events have occurred throughout much of the Pleistocene, present dry conditions having been established at the end of the Younger Dryas. A markedly different fauna comprising megafaunal elements not adapted to the present low arboreal scrubland caatinga vegetation existed in the area. Palaeobotanical remains embedded in travertine indicate forested vegetation at these wetter intervals, suggesting that the caatinga was then replaced or mixed with a semi-deciduous forest. Due to the abundance of travertine sites containing fossil botanical remains in northeastern Brazil, it is believed that forest expansion occurred over large areas of the now semi-arid zone, showing that the long hypothesised forested links between biodiversity-rich Amazon and Atlantic rainforests may indeed have existed during these moister phases. Copyright

Eco-geomorphic processes that maintain a small coral reef island: Ballast Island in the Ryukyu Islands, Japan

NASA Astrophysics Data System (ADS)

Kayanne, Hajime; Aoki, Kenji; Suzuki, Takuya; Hongo, Chuki; Yamano, Hiroya; Ide, Yoichi; Iwatsuka, Yuudai; Takahashi, Kenya; Katayama, Hiroyuki; Sekimoto, Tsunehiro; Isobe, Masahiko

2016-10-01

Landform changes in Ballast Island, a small coral reef island in the Ryukyu Islands, were investigated by remote sensing analysis and a field survey. The area of the island almost doubled after a mass coral bleaching event in 1998. Coral branches generated by the mass mortality and broken by waves were delivered and stocked on a reef flat and accumulated to expand the area of the island. In 2012 high waves generated by typhoons also changed the island's topography. Overall, the island moved in the downdrift direction of the higher waves. Waves impacting both sides of the island piled up a large volume of coral gravels above the high-tide level. Eco-geomorphic processes, including a supply of calcareous materials from the corals on the same reef especially during stormy wave conditions, were key factors in maintaining the dynamic topographic features of this small coral reef island.

Quantitative DNA Methylation Profiling in Cancer.

PubMed

Ammerpohl, Ole; Haake, Andrea; Kolarova, Julia; Siebert, Reiner

2016-01-01

Epigenetic mechanisms including DNA methylation are fundamental for the regulation of gene expression. Epigenetic alterations can lead to the development and the evolution of malignant tumors as well as the emergence of phenotypically different cancer cells or metastasis from one single tumor cell. Here we describe bisulfite pyrosequencing, a technology to perform quantitative DNA methylation analyses, to detect aberrant DNA methylation in malignant tumors.

Morphometric and landsliding analyses in chain domain: the Roccella basin, NE Sicily, Italy

NASA Astrophysics Data System (ADS)

Rapisarda, Francesco

2009-10-01

The dynamic interaction of endogenic and exogenic processes in active geodynamic context leads to the deterioration of the physico-mechanical characteristics of the rocks, inducing slopes instability. In such context, the morphometric parameters and the analysis of landslide distribution contribute to appraise the evolutive state of hydrographic basins. The aim of the study is the morphometric characterization of the Roccella Torrent basin (Rtb) located in South Italy. Landsliding and tectonic structure dynamically interact with the drainage pattern that records these effects and permits the definition of the evolutive geomorphic stage of the basin. The Air Photograph Investigation and field surveys permitted to draw the main geomorphic features, the drainage pattern of the Rtb, to calculate the morphometric parameters and to delimit the landslides’ bodies. Detailed analysis about the landslide distribution within a test site 17 km2 wide were carried out to elaborate indicative indexes of the landslides type and to single out the lithotypes that are more involved in slope instability phenomena. The morphometric parameters indicate the rejuvenation state within the Rtb where the stream reaches show the effects of increased energy relief in agreement with the geological settings of this sector of the Apennine-Maghrebian Chain.

Late Quaternary geomorphic history of a glacial landscape - new sedimentary and chronological data from the Cordillera de Cochabamba (Bolivia)

NASA Astrophysics Data System (ADS)

May, J.-H.; Preusser, F.; Zech, R.; Ilgner, J.; Veit, H.

2009-04-01

Throughout the Central Andes, glacial landscapes have long been used for the reconstruction of Late Quaternary glaciations and landscape evolution. Much work has focused on the Andes in Peru, Chile and the Bolivian Altiplano, whereas relatively little data has been published on glaciation history in the eastern Andean ranges and slopes. Even less is known with regard to the postglacial evolution of these glacial landscapes. In the Cordillera de Cochabamba (Bolivia), local maximum advances probably peaked around 20-25 ka BP and were followed by significant readvances between ~12-16 ka BP. This generally points to temperature controlled maximum glacial advances along the humid eastern slopes of the Central Andes, which is supported by glacier-climate-modelling studies. However, most studies include only marginal information with regard to the complex geomorphic and sedimentary situation in the Cordillera de Cochabamba. Furthermore, the chronological results are afflicted with several methodological uncertainties inherent to surface exposure dating and call for application of alternative, independent age dating methods. Therefore this study aims at i) documenting and interpreting the complex glacial geomorphology of the Huara Loma valley in the Cordillera de Cochabamba (Bolivia), ii) analyzing the involved units of glacial sediments, and iii) improving the chronological framework by applying optically stimulated luminescence (OSL) and radiocarbon dating (14C). For this purpose, geomorphic mapping was combined with field documentation of sedimentary profiles. The involved sediments were subject to geochemical and mineralogical analysis in order to deduce information on their erosional and weathering histories. In addition, the interpretation of OSL ages from glacial and proglacial sediments integrated several methodological procedures with regard to sample preparation and statistical analysis of the measurements in order to increase the degree of confidence. These

Modeling the Effect of Geomorphic Change Triggered by Large Wood Addition on Salmon Habitat in a Forested Coastal Watershed

NASA Astrophysics Data System (ADS)

Bair, R.; Segura, C.; Lorion, C.

2015-12-01

Large wood (LW) additions are often part of fish habitat restorations in the PNW where historic forest clear-cutting limited natural wood recruitment. These efforts' relative successes are rarely reported in terms of ecological significance to different life stages of fish. Understanding the effectiveness of LW additions will contribute to successfully managing forest land. In this study we quantify the geomorphic change of a restoration project involving LW additions to three alluvial reaches in Mill Creek, OR. The reaches are 110-130m in plane-bed morphology and drain 2-16km2. We quantify the change in available habitat to different life stages of coho salmon in terms of velocity (v), shear stress (t), flow depth, and grain size distributions (GSD) considering existing thresholds in the literature for acceptable habitat. Flow conditions before and after LW additions are assessed using a 2D hydrodynamic model (FaSTMECH). Model inputs include detailed channel topography, discharge, and surface GSD. The spatial-temporal variability of sediment transport was also quantified based the modeled t distributions and the GSD to document changes in the overall geomorphic regime. Initial modeling results for pre wood conditions show mean t and v values ranging between 0 and 26N/m2 and between 0 and 2.4m/s, respectively for up to bankfull flow (Qbf). The distributions of both t and v become progressively wider and peak at higher values as flow increases with the notable exception at Qbf for which the area of low velocity increases noticeably. The spatial distributions of velocity results indicates that the extent of suitable habitat for adult coho decreased by 18% between flows 30 and 55% of BF. However the area of suitable habitat increased by 15% between 0.55Qbf and Qbf as the flow spreads from the channel into the floodplain. We expect the LW will enhance floodplain connectivity and thus available habitat by creating additional areas of low v during winter flows.

Beyond Math Skills: Measuring Quantitative Reasoning in Context

ERIC Educational Resources Information Center

Grawe, Nathan D.

2011-01-01

It might be argued that quantitative and qualitative analyses are merely two alternative reflections of an overarching critical thinking. For instance, just as instructors of numeracy warn their charges to consider the construction of variables, teachers of qualitative approaches caution students to define terms. Similarly, an advocate of…

Investigating the Geomorphic Behavior of the Cape Canaveral Coast Through High-Resolution Beach Monitoring, Sediment Analysis, Oceanographic Observations, and Numerical Modeling

NASA Astrophysics Data System (ADS)

Adams, P. N.; Jaeger, J. M.; MacKenzie, R. A.; Kline, S. W.; Maibauer, B. J.; Plant, N. G.; Gravens, M. B.; Pierro, T. P.; Shaffer, J.

2011-12-01

The salient of Cape Canaveral interrupts a relatively straight, sandy, passive margin coastline that extends nearly 400 km from the St. Johns River mouth to the St. Lucie Inlet along the Florida Atlantic coast. OSL dating indicates that the modern cape has been prograding rapidly since the LGM and subtle topographic features, inland from the modern cape, suggest that this salient has persisted over several sea level cycles since the early Pleistocene. Dynamic shoreline change over the past decade at the Kennedy Space Center (KSC) is threatening critical NASA infrastructure and has prompted officials to develop a mitigation strategy through a partnership among researchers from the U.S. Geological Survey, the U.S. Army Corps of Engineers, private coastal engineering firms, and the University of Florida. Since May 2009, the research team has assembled data on decadal to event-scale shoreline change (dGPS), beach and nearshore morphodynamics (dGPS and Argus), beach sedimentary character (grain size analysis), wave climate and transformation (ADCP), and inner shelf bathymetry (Echo Sounding) in an effort to assess dune vulnerability and flooding risk. In addition, SWAN numerical modeling simulations offer insight into the influence of irregular bathymetry (cape-associated shoals) on the alteration of spatial patterns of wave energy flux during a decadal shift in deep-water wave climate. Beach-fx, modeling of cross-shore profile evolution is being applied to evaluate the performance of alternative protective measures, estimate project costs, and examine ecological influences of the proposed alternative protective measures. By combining contemporaneous data of coastal geomorphic and sedimentary response to wave forcing with numerical model results that explore a range of climate scenarios, we aim to develop a useful understanding of the coastal geomorphic behavior at KSC that can be used to make a mitigation recommendation.

Re-evaluation of a novel approach for quantitative myocardial oedema detection by analysing tissue inhomogeneity in acute myocarditis using T2-mapping.

PubMed

Baeßler, Bettina; Schaarschmidt, Frank; Treutlein, Melanie; Stehning, Christian; Schnackenburg, Bernhard; Michels, Guido; Maintz, David; Bunck, Alexander C

2017-12-01

To re-evaluate a recently suggested approach of quantifying myocardial oedema and increased tissue inhomogeneity in myocarditis by T2-mapping. Cardiac magnetic resonance data of 99 patients with myocarditis were retrospectively analysed. Thirthy healthy volunteers served as controls. T2-mapping data were acquired at 1.5 T using a gradient-spin-echo T2-mapping sequence. T2-maps were segmented according to the 16-segments AHA-model. Segmental T2-values, segmental pixel-standard deviation (SD) and the derived parameters maxT2, maxSD and madSD were analysed and compared to the established Lake Louise criteria (LLC). A re-estimation of logistic regression models revealed that all models containing an SD-parameter were superior to any model containing global myocardial T2. Using a combined cut-off of 1.8 ms for madSD + 68 ms for maxT2 resulted in a diagnostic sensitivity of 75% and specificity of 80% and showed a similar diagnostic performance compared to LLC in receiver-operating-curve analyses. Combining madSD, maxT2 and late gadolinium enhancement (LGE) in a model resulted in a superior diagnostic performance compared to LLC (sensitivity 93%, specificity 83%). The results show that the novel T2-mapping-derived parameters exhibit an additional diagnostic value over LGE with the inherent potential to overcome the current limitations of T2-mapping. • A novel quantitative approach to myocardial oedema imaging in myocarditis was re-evaluated. • The T2-mapping-derived parameters maxT2 and madSD were compared to traditional Lake-Louise criteria. • Using maxT2 and madSD with dedicated cut-offs performs similarly to Lake-Louise criteria. • Adding maxT2 and madSD to LGE results in further increased diagnostic performance. • This novel approach has the potential to overcome the limitations of T2-mapping.

Review of Department of Defense Education Activity (DoDEA) Schools. Volume II: Quantitative Analysis of Educational Quality. IDA Paper.

ERIC Educational Resources Information Center

Anderson, Lowell Bruce; Bracken, Jerome; Bracken, Marilyn C.

This volume compiles, and presents in integrated form, the Institute for Defense Analyses' (IDA) quantitative analysis of educational quality provided by the Department of Defense's dependent schools. It covers the quantitative aspects of volume 1 in greater detail and presents some analyses deemed too technical for that volume. The first task in…

Geomorphic response to tectonically-induced ground deformation in the Wabash Valley

USGS Publications Warehouse

Fraser, G.S.; Thompson, T.A.; Olyphant, G.A.; Furer, L.; Bennett, S.W.

1997-01-01

Numerous low- to moderate-intensity earthquakes have been recorded in a zone of diffuse modern seismicity in southwest Indiana, southeast Illinois, and northernmost Kentucky. Structural elements within the zone include the Wabash Valley Fault System, the LaSalle Anticlinal Belt in western Illinois, and the Rough Creek-Shawneetown Fault System in northern Kentucky. The presence of seismically-induced liquefaction features in the near-surface alluvial sediments in the region indicates that strong ground motion has occurred in the recent geological past, but because the glacial and alluvial sediments in the Wabash Valley appear to be otherwise undisturbed, post-Paleozoic ground deformation resulting from movement on these structural elements has not yet been documented. Morphometric analysis of the land surface, detailed mapping of geomorphic elements in the valley, reconnaissance drilling of the Holocene and Pleistocene alluvium, and structural analysis of the bedrock underlying the valley were used to determine whether the geomorphology of the valley and the patterns of alluviation of the Wabash River were affected by surface deformation associated with the seismic zone during the late Pleistocene and Holocene. Among the observed features in the valley that can be attributed to deformation are: (1) tilting of the modern land surface to the west, (2) preferred channel migration toward the west side of the valley, with concomitant impact on patterns of soil development and sedimentation rate, (3) a convex longitudinal profile of the Wabash River where it crosses the LaSalle Anticlinal Belt, and (4) increased incision of the river into its floodplain downstream from the anticlinal belt.

Qualitative and Quantitative Drug residue analyses: Florfenicol in white-tailed deer (Odocoileus virginianus) and supermarket meat by liquid chromatography tandem-mass spectrometry.

PubMed

Anderson, Shanoy C; Subbiah, Seenivasan; Gentles, Angella; Austin, Galen; Stonum, Paul; Brooks, Tiffanie A; Brooks, Chance; Smith, Ernest E

2016-10-15

A method for confirmation and detection of Florfenicol amine residues in white-tailed deer tissues was developed and validated in our laboratory. Tissue samples were extracted with ethyl acetate and cleaned up on sorbent (Chem-elut) cartridges. Liguid chromatography (LC) separation was achieved on a Zorbax Eclipse plus C18 column with gradient elution using a mobile phase composed of ammonium acetate in water and methanol at a flow rate of 300μL/min. Qualitative and quantitative analyses were carried out using liquid chromatography - heated electrospray ionization(HESI) and atmospheric pressure chemical ionization (APCI)-tandem mass spectrometry in the multiple reaction monitoring (MRM) interface. The limits of detection (LODs) for HESI and APCI probe were 1.8ng/g and 1.4ng/g respectively. Limits of quantitation (LOQs) for HESI and APCI probe were 5.8ng/g and 3.4ng/g respectively. Mean recovery values ranged from 79% to 111% for APCI and 30% to 60% for HESI. The validated method was used to determine white-tailed deer florfenicol tissue residue concentration 10-days after exposure. Florfenicol tissue residues concentration ranged from 0.4 to 0.6μg/g for liver and 0.02-0.05μg/g for muscle and a trace in blood samples. The concentration found in the tested edible tissues were lower than the maximum residual limit (MRL) values established by the federal drug administration (FDA) for bovine tissues. In summary, the resulting optimization procedures using the sensitivity of HESI and APCI probes in the determination of florfenicol in white-tailed deer tissue are the most compelling conclusions in this study, to the extent that we have applied this method in the evaluation of supermarket samples drug residue levels as a proof of principle. Copyright © 2016. Published by Elsevier B.V.

Structural and quantitative expression analyses of HERV gene family in human tissues.

PubMed

Ahn, Kung; Kim, Heui-Soo

2009-08-31

Human endogenous retroviruses (HERVs) have been implicated in the pathogenesis of several human diseases as multi-copy members in the human genome. Their gene expression profiling could provide us with important insights into the pathogenic relationship between HERVs and cancer. In this study, we have evaluated the genomic structure and quantitatively determined the expression patterns in the env gene of a variety of HERV family members located on six specific loci by the RetroTector 10 program, as well as real-time RT-PCR amplification. The env gene transcripts evidenced significant differences in the human tumor/normal adjacent tissues (colon, liver, uterus, lung and testis). As compared to the adjacent normal tissues, high levels of expression were noted in testis tumor tissues for HERV-K, in liver and lung tumor tissues for HERV-R, in liver, lung, and testis tumor tissues for HERV-H, and in colon and liver tumor tissues for HERV-P. These data warrant further studies with larger groups of patients to develop biomarkers for specific human cancers.

CIU and Main Event Analyses of the Structured Discourse of Older and Younger Adults

ERIC Educational Resources Information Center

Capilouto, Gilson; Wright, Heather Harris; Wagovich, Stacy A.

2005-01-01

Correct information unit (CIU) and main event analyses are quantitative measures for analyzing discourse of individuals with aphasia. Comparative data from healthy younger (YG) and older (OD) adults and an investigation of the influence of stimuli type would considerably extend the usefulness of such analyses. The objectives were (a) to compare…

Human-induced hydrologic and geomorphic changes in the crisscross river network of the Pearl River Delta, South China

NASA Astrophysics Data System (ADS)

Chen, Y. D.; Chen, X. H.

2003-04-01

The West River, the North River and the East River, collectively called the Pearl River, have a total drainage area of 453,690 km2 in southern and southwestern China and flow into the South China Sea. The three rivers join together and form the Pearl River Delta (PRD) with an area of 26,820 km2. The crisscross river network (density: 0.68-1.07 km/km2) in the PRD is one of the most complicated deltaic drainage systems in the world. As the region experiencing the most rapid economic growth in China over the past two decades, the PRD has witnessed massive changes in both the social and the natural environment, leading to an urgent need of studying regional environmental changes caused by intensive human activities. This paper aims to summarize and illustrate a variety of human-induced hydrologic and geomorphic changes in the PRD river network and to present an analysis of the causes and effects of these changes. Findings of this study will help decision-makers to formulate river management and mitigation strategies and policies in the region. The hydrologic characteristics of the PRD river network have been altered to varying degrees in the following three main aspects. First and most importantly, stage has become higher or lower over the past several decades in an uneven manner in different parts of the delta. From the early 1950s to the 1980s, scattered and small embankments were enlarged and combined to expand land mass and reduce flood hazards in the PRD. However, reduction of water surface area and concentration of flow into major channels generally caused stage to go up slightly. Since the early 1990s, stage in the upper part of the PRD has significantly dropped down while the opposite situation has become more and more common in the central PRD where enormous flood damages have occurred. Secondly, corresponding to the stage changes, the stage-discharge relationship has been substantially modified, as evidenced by over 2 m drop of stage for the same amount of

A model for the geomorphic development of normal-fault facets

NASA Astrophysics Data System (ADS)

Tucker, G. E.; Hobley, D. E. J.; McCoy, S. W.

2014-12-01

Triangular facets are among the most striking landforms associated with normal faulting. The genesis of facets is of great interest both for the information facets contain about tectonic motion, and because the progressive emergence of facets makes them potential recorders of both geomorphic and tectonic history. In this report, we present observations of triangular facets in the western United States and in the Italian Central Apennines. Facets in these regions typically form quasi-planar surfaces that are aligned in series along and above the trace of an active fault. Some facet surfaces consist mainly of exposed bedrock, with a thin and highly discontinuous cover of loose regolith. Other facets are mantled by a several-decimeter-thick regolith cover. Over the course of its morphologic development, a facet slope segment may evolve from a steep (~60 degree) bedrock fault scarp, well above the angle of repose for soil, to a gentler (~20-40 degree) slope that can potentially sustain a coherent regolith cover. This evolutionary trajectory across the angle of repose renders nonlinear diffusion theory inapplicable. To formulate an alternative process-based theory for facet evolution, we use a particle-based approach that acknowledges the possibility for both short- and long-range sediment-grain motions, depending on the topography. The processes of rock weathering, grain entrainment, and grain motion are represented as stochastic state-pair transitions with specified transition rates. The model predicts that facet behavior can range smoothly along the spectrum from a weathering-limited mode to a transport-limited mode, depending on the ratio of fault-slip rate to bare-bedrock regolith production rate. The model also implies that facets formed along a fault with pinned tips should show systematic variation in slope angle that correlates with along-fault position and slip rate. Preliminary observations from central Italy and the eastern Basin and Range are consistent

Geomorphic impacts of flash flooding in a forested headwater basin

NASA Astrophysics Data System (ADS)

Phillips, Jonathan D.

2002-12-01

Geomorphic impacts of a July 2001 flood in the Hungry Mother basin near Marion, Virginia, were examined to shed light on the relationships between channel characteristics and the frequency of channel-modifying discharges. Creeks in the study area have been observed for many years, with no significant channel changes since at least 1985. The 2001 flood had a recurrence interval of >200 years, and caused the only channel change, bank erosion, and transport of coarse channel material observed in recent decades. The paucity of fines in channels before or after the flood, and the absence of sub-sand sized material in the flood deposits, indicates that normal, frequent, well-below-bankfull flows are sufficient to transport the (apparently limited) supply of fines. The large particles transported during the 2001 flood after years of inactivity indicate that relatively rare floods are necessary to mobilize this material. This suggests the notion of a bimodal 'dominant' discharge. On the one hand frequent flows considerably below bankfull levels are sufficient to maintain the channel and prevent significant accumulation of fine sediments and organic matter. On the other hand, rare floods are necessary to transport the coarser bed material and erode channel banks. In the Hungry Mother area, bed material has no relationship to normal flows, or to flows with recurrence intervals on the order of 1-3 years. Bankfull discharge is apparently not related to either the maintenance or channel-changing dominant discharges. These results suggest that the use of channel dimensions and/or bed material as surrogate indicators of hydrologic regimes can be quite complicated, and that in some streams bankfull flow has no particular significance in terms of sediment transport and channel modifications.

Age discrimination among basalt flows using digitally enhanced LANDSAT imagery. [Saudi Arabia

NASA Technical Reports Server (NTRS)

Blodget, H. W.; Brown, G. F.

1984-01-01

Digitally enhanced LANDSAT MSS data were used to discriminate among basalt flows of historical to Tertiary age, at a test site in Northwestern Saudi Arabia. Spectral signatures compared favorably with a field-defined classification that permits discrimination among five groups of basalt flows on the basis of geomorphic criteria. Characteristics that contributed to age definition include: surface texture, weathering, color, drainage evolution, and khabrah development. The inherent gradation in the evolution of geomorphic parameters, however, makes visual extrapolation between areas subjective. Therefore, incorporation of spectrally-derived volcanic units into the mapping process should produce more quantitatively consistent age groupings.

Analysing magnetism using scanning SQUID microscopy.

PubMed

Reith, P; Renshaw Wang, X; Hilgenkamp, H

2017-12-01

Scanning superconducting quantum interference device microscopy (SSM) is a scanning probe technique that images local magnetic flux, which allows for mapping of magnetic fields with high field and spatial accuracy. Many studies involving SSM have been published in the last few decades, using SSM to make qualitative statements about magnetism. However, quantitative analysis using SSM has received less attention. In this work, we discuss several aspects of interpreting SSM images and methods to improve quantitative analysis. First, we analyse the spatial resolution and how it depends on several factors. Second, we discuss the analysis of SSM scans and the information obtained from the SSM data. Using simulations, we show how signals evolve as a function of changing scan height, SQUID loop size, magnetization strength, and orientation. We also investigated 2-dimensional autocorrelation analysis to extract information about the size, shape, and symmetry of magnetic features. Finally, we provide an outlook on possible future applications and improvements.

Analysing magnetism using scanning SQUID microscopy

NASA Astrophysics Data System (ADS)

Reith, P.; Renshaw Wang, X.; Hilgenkamp, H.

2017-12-01

Scanning superconducting quantum interference device microscopy (SSM) is a scanning probe technique that images local magnetic flux, which allows for mapping of magnetic fields with high field and spatial accuracy. Many studies involving SSM have been published in the last few decades, using SSM to make qualitative statements about magnetism. However, quantitative analysis using SSM has received less attention. In this work, we discuss several aspects of interpreting SSM images and methods to improve quantitative analysis. First, we analyse the spatial resolution and how it depends on several factors. Second, we discuss the analysis of SSM scans and the information obtained from the SSM data. Using simulations, we show how signals evolve as a function of changing scan height, SQUID loop size, magnetization strength, and orientation. We also investigated 2-dimensional autocorrelation analysis to extract information about the size, shape, and symmetry of magnetic features. Finally, we provide an outlook on possible future applications and improvements.

Grey literature in meta-analyses.

PubMed

Conn, Vicki S; Valentine, Jeffrey C; Cooper, Harris M; Rantz, Marilyn J

2003-01-01

In meta-analysis, researchers combine the results of individual studies to arrive at cumulative conclusions. Meta-analysts sometimes include "grey literature" in their evidential base, which includes unpublished studies and studies published outside widely available journals. Because grey literature is a source of data that might not employ peer review, critics have questioned the validity of its data and the results of meta-analyses that include it. To examine evidence regarding whether grey literature should be included in meta-analyses and strategies to manage grey literature in quantitative synthesis. This article reviews evidence on whether the results of studies published in peer-reviewed journals are representative of results from broader samplings of research on a topic as a rationale for inclusion of grey literature. Strategies to enhance access to grey literature are addressed. The most consistent and robust difference between published and grey literature is that published research is more likely to contain results that are statistically significant. Effect size estimates of published research are about one-third larger than those of unpublished studies. Unfunded and small sample studies are less likely to be published. Yet, importantly, methodological rigor does not differ between published and grey literature. Meta-analyses that exclude grey literature likely (a) over-represent studies with statistically significant findings, (b) inflate effect size estimates, and (c) provide less precise effect size estimates than meta-analyses including grey literature. Meta-analyses should include grey literature to fully reflect the existing evidential base and should assess the impact of methodological variations through moderator analysis.

Geomorphic effects of large debris flows and flash floods, northern Venezuela, 1999

USGS Publications Warehouse

Larsen, M.C.; Wieczorek, G.F.

2006-01-01

A rare, high-magnitude storm in northern Venezuela in December 1999 triggered debris flows and flash floods, and caused one of the worst natural disasters in the recorded history of the Americas. Some 15,000 people were killed. The debris flows and floods inundated coastal communities on alluvial fans at the mouths of a coastal mountain drainage network and destroyed property estimated at more than $2 billion. Landslides were abundant and widespread on steep slopes within areas underlain by schist and gneiss from near the coast to slightly over the crest of the mountain range. Some hillsides were entirely denuded by single or coalescing failures, which formed massive debris flows in river channels flowing out onto densely populated alluvial fans at the coast. The massive amount of sediment derived from 24 watersheds along 50 km of the coast during the storm and deposited on alluvial fans and beaches has been estimated at 15 to 20 million m3. Sediment yield for the 1999 storm from the approximately 200 km2 drainage area of watersheds upstream of the alluvial fans was as much as 100,000 m3/km2. Rapid economic development in this dynamic geomorphic environment close to the capital city of Caracas, in combination with a severe rain storm, resulted in the death of approximately 5% of the population (300,000 total prior to the storm) in the northern Venezuelan state of Vargas. ?? 2006 Gebru??der Borntraeger.

Diagnostic performance of semi-quantitative and quantitative stress CMR perfusion analysis: a meta-analysis.

PubMed

van Dijk, R; van Assen, M; Vliegenthart, R; de Bock, G H; van der Harst, P; Oudkerk, M

2017-11-27

Stress cardiovascular magnetic resonance (CMR) perfusion imaging is a promising modality for the evaluation of coronary artery disease (CAD) due to high spatial resolution and absence of radiation. Semi-quantitative and quantitative analysis of CMR perfusion are based on signal-intensity curves produced during the first-pass of gadolinium contrast. Multiple semi-quantitative and quantitative parameters have been introduced. Diagnostic performance of these parameters varies extensively among studies and standardized protocols are lacking. This study aims to determine the diagnostic accuracy of semi- quantitative and quantitative CMR perfusion parameters, compared to multiple reference standards. Pubmed, WebOfScience, and Embase were systematically searched using predefined criteria (3272 articles). A check for duplicates was performed (1967 articles). Eligibility and relevance of the articles was determined by two reviewers using pre-defined criteria. The primary data extraction was performed independently by two researchers with the use of a predefined template. Differences in extracted data were resolved by discussion between the two researchers. The quality of the included studies was assessed using the 'Quality Assessment of Diagnostic Accuracy Studies Tool' (QUADAS-2). True positives, false positives, true negatives, and false negatives were subtracted/calculated from the articles. The principal summary measures used to assess diagnostic accuracy were sensitivity, specificity, andarea under the receiver operating curve (AUC). Data was pooled according to analysis territory, reference standard and perfusion parameter. Twenty-two articles were eligible based on the predefined study eligibility criteria. The pooled diagnostic accuracy for segment-, territory- and patient-based analyses showed good diagnostic performance with sensitivity of 0.88, 0.82, and 0.83, specificity of 0.72, 0.83, and 0.76 and AUC of 0.90, 0.84, and 0.87, respectively. In per territory

Note on the chromatographic analyses of marine polyunsaturated fatty acids

USGS Publications Warehouse

Schultz, D.M.; Quinn, J.G.

1977-01-01

Gas-liquid chromatography was used to study the effects of saponification/methylation and thin-layer chromatographic isolation on the analyses of polyunsaturated fatty acids. Using selected procedures, the qualitative and quantitative distribution of these acids in marine organisms can be determined with a high degree of accuracy. ?? 1977 Springer-Verlag.

Quantitative Analyse der Korallenbesiedlung eines Vorriffareals bei Aqaba (Rotes Meer)

NASA Astrophysics Data System (ADS)

Mergner, H.; Schuhmacher, H.

1981-09-01

Previous descriptions of the ecology and zonation of Aqaba reefs (Mergner & Schuhmacher, 1974) are supplemented by this quantitative study of a test quadrat (5×5 m in size), randomly chosen in some 10 m depth in the middle fore reef of a coastal fringing reef. Of the total surface of 25 m2 Cnidaria represent 42.31%, sponges 0.17%, calcareous algae 0.20%, dead coral rock and pebble 30.27% and sand and coral debris 26.15%. The cnidarian cover is roughly equally contributed by 50.86% Scleractinia and 48.61% Alcyonaria, mainly Xeniidae (35.81%). For each species the percentage of the total cover (measured as vertical projection), colony number, average and maximal colony size are given. A total number of 104 cnidarian species was recorded, among which the 78 scleractinian species represent 34 of the 55 coral genera known from the Red Sea. The well balanced regime of moderate light and current conditions which are tolerated both by shallow and deep water species may account for the high species number. Disturbances such as occasional sedimentation, grazing of sea urchins (Diadema setosum) and overgrowth of stony corals by xeniids result in continuous fluctuations of the coral community, in small colony size and in high colony number. Abiotic factors and biotic interactions maintain a diversity (H=3.67) which ranks among the greatest ever found in reef communities. The data obtained from the fore reef square are compared with those of a similar test square in the lagoon of the same reef and with results from transect zonations on the opposite coast of the Gulf of Aqaba. These comparisons indicate that the fore reef harbours the richest coral fauna in the reef. The inventory of coral species at the northern end of the Gulf of Aqaba, one of the northernmost outposts of the coral reef belt, is only little reduced when compared with that of the central Red Sea; this great species diversity is in contrast to the worldwide decrease of species number towards the periphery of

Regional hard coral distribution within geomorphic and reef flat ecological zones determined by satellite imagery of the Xisha Islands, South China Sea

NASA Astrophysics Data System (ADS)

Zuo, Xiuling; Su, Fenzhen; Zhao, Huanting; Zhang, Junjue; Wang, Qi; Wu, Di

2017-05-01

Coral reefs in the Xisha Islands (also known as the Paracel Islands in English), South China Sea, have experienced dramatic declines in coral cover. However, the current regional scale hard coral distribution of geomorphic and ecological zones, essential for reefs management in the context of global warming and ocean acidification, is not well documented. We analyzed data from field surveys, Landsat-8 and GF-1 images to map the distribution of hard coral within geomorphic zones and reef flat ecological zones. In situ surveys conducted in June 2014 on nine reefs provided a complete picture of reef status with regard to live coral diversity, evenness of coral cover and reef health (live versus dead cover) for the Xisha Islands. Mean coral cover was 12.5% in 2014 and damaged reefs seemed to show signs of recovery. Coral cover in sheltered habitats such as lagoon patch reefs and biotic dense zones of reef flats was higher, but there were large regional differences and low diversity. In contrast, the more exposed reef slopes had high coral diversity, along with high and more equal distributions of coral cover. Mean hard coral cover of other zones was <10%. The total Xisha reef system was estimated to cover 1 060 km2, and the emergent reefs covered 787 m2. Hard corals of emergent reefs were considered to cover 97 km2. The biotic dense zone of the reef flat was a very common zone on all simple atolls, especially the broader northern reef flats. The total cover of live and dead coral can reach above 70% in this zone, showing an equilibrium between live and dead coral as opposed to coral and algae. This information regarding the spatial distribution of hard coral can support and inform the management of Xisha reef ecosystems.

Tectonic Geomorphology.

ERIC Educational Resources Information Center

Bull, William B.

1984-01-01

Summarizes representative quantitative tectonic-geomorphology studies made during the last century, focusing on fault-bounded mountain-front escarpments, marine terraces, and alluvial geomorphic surfaces (considering stream terraces, piedmont fault scarps, and soils chronosequences). Also suggests where tectonic-geomorphology courses may best fit…

Numerical modeling of the late Cenozoic geomorphic evolution of Grand Canyon, Arizona

NASA Astrophysics Data System (ADS)

Pelletier, J. D.

2008-12-01

The late Cenozoic geomorphic evolution of Grand Canyon has been influenced by three primary tectonic and drainage adjustment events. First, incision into the Paleozoic strata of the southwestern margin of the Colorado Plateau began at 16 Ma in response to relief production along the Grand Wash Fault. Second, the ancestral Upper Colorado River reversed drainage and became integrated with the Lower Colorado River basin through Grand Canyon between 5.5 and 6 Ma. Third, the Colorado River was influenced by Plio- Quaternary normal faulting along the Hurricane and Toroweap Faults. Despite the relatively firm constraints available on the timing of these events, the geomorphic evolution of Grand Canyon is still not well constrained and many questions remain. For example, was there a deeply-incised gorge in western Grand Canyon before Colorado River integration? How and where was the Colorado River integrated? How have incision rates varied in space and time? In this paper, I describe the results of a numerical modeling study designed to address these questions. The model integrates the stream power model for bedrock channel erosion with cliff retreat and the flexural-isostatic response to erosion. The model honors the structural geology of the Grand Canyon region, including the variable erodibility of rocks in the Colorado Plateau and the occurrence of Plio-Quaternary normal faulting along the Hurricane-Toroweap Fault system. We present the results of two models designed to bracket the possible drainage architectures of the southwestern margin of the Colorado Plateau in Miocene time. In the first model, we assume a 13,000 km2 drainage basin primarily sourced from the Hualapai and Coconino Plateaux. The results of this model indicate that relief production along the Grand Wash fault initiated the formation of a large (700 m) knickpoint that migrated headward at a rate of 15 km/Myr prior to drainage integration at 6 Ma to form a deep gorge in western Grand Canyon. This model

Vibrational algorithms for quantitative crystallographic analyses of hydroxyapatite-based biomaterials: I, theoretical foundations.

PubMed

Pezzotti, Giuseppe; Zhu, Wenliang; Boffelli, Marco; Adachi, Tetsuya; Ichioka, Hiroaki; Yamamoto, Toshiro; Marunaka, Yoshinori; Kanamura, Narisato

2015-05-01

The Raman spectroscopic method has quantitatively been applied to the analysis of local crystallographic orientation in both single-crystal hydroxyapatite and human teeth. Raman selection rules for all the vibrational modes of the hexagonal structure were expanded into explicit functions of Euler angles in space and six Raman tensor elements (RTE). A theoretical treatment has also been put forward according to the orientation distribution function (ODF) formalism, which allows one to resolve the statistical orientation patterns of the nm-sized hydroxyapatite crystallite comprised in the Raman microprobe. Close-form solutions could be obtained for the Euler angles and their statistical distributions resolved with respect to the direction of the average texture axis. Polarized Raman spectra from single-crystalline hydroxyapatite and textured polycrystalline (teeth enamel) samples were compared, and a validation of the proposed Raman method could be obtained through confirming the agreement between RTE values obtained from different samples.

Appraising Quantitative Research in Health Education: Guidelines for Public Health Educators

PubMed Central

Hayes, Sandra C.; Scharalda, Jeanfreau G.; Stetson, Barbara; Jones-Jack, Nkenge H.; Valliere, Matthew; Kirchain, William R.; Fagen, Michael; LeBlanc, Cris

2010-01-01

Many practicing health educators do not feel they possess the skills necessary to critically appraise quantitative research. This publication is designed to help provide practicing health educators with basic tools helpful to facilitate a better understanding of quantitative research. This article describes the major components—title, introduction, methods, analyses, results and discussion sections—of quantitative research. Readers will be introduced to information on the various types of study designs and seven key questions health educators can use to facilitate the appraisal process. Upon reading, health educators will be in a better position to determine whether research studies are well designed and executed. PMID:20400654

Hydrologic and geomorphic changes resulting from episodic glacial lake outburst floods: Rio Colonia, Patagonia, Chile

NASA Astrophysics Data System (ADS)

Jacquet, J.; McCoy, S. W.; McGrath, D.; Nimick, D. A.; Fahey, M.; O'kuinghttons, J.; Friesen, B. A.; Leidich, J.

2017-01-01

Glacial lake outburst floods (GLOFs) are a prominent but poorly understood cryospheric hazard in a warming climate. We quantify the hydrologic and geomorphic response to 21 episodic GLOFs that began in April 2008 using multitemporal satellite imagery and field observations. Peak discharge exiting the source lake became progressively muted downstream. At 40-60 km downstream, where the floods entered and traveled down the main stem Rio Baker, peak discharges were generally < 2000 m3 s-1, although these flows were still >1-2 times the peak annual discharge of this system, Chile's largest river by volume. As such, caution must be applied to empirical relationships relating lake volume to peak discharge, as the latter is dependent on where this observation is made along the flood path. The GLOFs and subsequent periods of free drainage resulted in > 40 m of incision, the net removal of 25 × 106 m3 of sediment from the source lake basin, and a nonsteady channel configuration downstream. These results demonstrate that GLOFs sourced from low-order tributaries can produce significant floods on major main stem rivers, in addition to significantly altering sediment dynamics.

Slip-accumulation patterns and earthquake recurrences along the Talas-Fergana Fault - Contributions of high-resolution geomorphic offsets.

NASA Astrophysics Data System (ADS)

Rizza, M.; Dubois, C.; Fleury, J.; Abdrakhmatov, K.; Pousse, L.; Baikulov, S.; Vezinet, A.

2017-12-01

In the western Tien-Shan Range, the largest intracontinental strike-slip fault is the Karatau-Talas Fergana Fault system. This dextral fault system is subdivided into two main segments: the Karatau fault to the north and the Talas-Fergana fault (TFF) to the south. Kinematics and rates of deformation for the TFF during the Quaternary period are still debated and are poorly constrained. Only a few paleoseismological investigations are availabe along the TFF (Burtman et al., 1996; Korjenkov et al., 2010) and no systematic quantifications of the dextral displacements along the TFF has been undertaken. As such, the appraisal of the TFF behavior demands new tectonic information. In this study, we present the first detailed analysis of the morphology and the segmentation of the TFF and an offset inventory of morphological markers along the TFF. To discuss temporal and spatial recurrence patterns of slip accumulated over multiple seismic events, our study focused on a 60 km-long section of the TFF (Chatkal segment). Using tri-stereo Pleiades satellite images, high-resolution DEMs (1*1 m pixel size) have been generated in order to (i) analyze the fine-scale fault geometry and (ii) thoroughly measure geomorphic offsets. Photogrammetry data obtained from our drone survey on high interest sites, provide higher-resolution DEMs of 0.5 * 0.5 m pixel size.Our remote sensing mapping allows an unprecedented subdivision - into five distinct segments - of the study area. About 215 geomorphic markers have been measured and offsets range from 4.5m to 180 m. More than 80% of these offsets are smaller than 60 m, suggesting landscape reset during glacial maximum. Calculations of Cumulative Offset Probability Density (COPD) for the whole 60 km-long section as well as for each segments support distinct behavior from a segment to another and thus variability in slip-accumulation patterns. Our data argue for uniform slip model behavior along this section of the TFF. Moreover, we excavated a

Descriptive and Experimental Analyses of Potential Precursors to Problem Behavior

PubMed Central

Borrero, Carrie S.W; Borrero, John C

2008-01-01

We conducted descriptive observations of severe problem behavior for 2 individuals with autism to identify precursors to problem behavior. Several comparative probability analyses were conducted in addition to lag-sequential analyses using the descriptive data. Results of the descriptive analyses showed that the probability of the potential precursor was greater given problem behavior compared to the unconditional probability of the potential precursor. Results of the lag-sequential analyses showed a marked increase in the probability of a potential precursor in the 1-s intervals immediately preceding an instance of problem behavior, and that the probability of problem behavior was highest in the 1-s intervals immediately following an instance of the precursor. We then conducted separate functional analyses of problem behavior and the precursor to identify respective operant functions. Results of the functional analyses showed that both problem behavior and the precursor served the same operant functions. These results replicate prior experimental analyses on the relation between problem behavior and precursors and extend prior research by illustrating a quantitative method to identify precursors to more severe problem behavior. PMID:18468281

Using earthquake-triggered landslides as a hillslope-scale shear strength test: Insights into rock strength properties at geomorphically relevant spatial scales in high-relief, tectonically active settings

NASA Astrophysics Data System (ADS)

Gallen, Sean; Clark, Marin; Godt, Jonathan; Lowe, Katherine

2016-04-01

The material strength of rock is known to be a fundamental property in setting landscape form and geomorphic process rates as it acts to modulate feedbacks between earth surface processes, tectonics, and climate. Despite the long recognition of its importance in landscape evolution, a quantitative understanding of the role of rock strength in affecting geomorphic processes lags our knowledge of the influence of tectonics and climate. This gap stems largely from the fact that it remains challenging to quantify rock strength at the hillslope scale. Rock strength is strongly scale dependent because the number, size, spacing, and aperture of fractures sets the upper limit on rock strength, making it difficult to extrapolate laboratory measurements to landscape-scale interpretations. Here we present a method to determine near-surface rock strength at the hillslope-scale, relying on earthquake-triggered landslides as a regional-scale "shear strength" test. We define near-surface strength as the average strength of rock sample by the landslides, which is typically < 10 m. Based on a Newmark sliding block model, which approximates slope stability during an earthquake assuming a material with frictional and cohesive strength, we developed a coseismic landslide model that is capable of reproducing statistical characteristics of the distribution of earthquake-triggered landslides. We present results from two well-documented case-studies of earthquakes that caused widespread mass-wasting; the 2008 Mw 7.9 Wenchuan Earthquake, Sichuan Province, China and the 1994 Mw. 6.8 Northridge Earthquake, CA, USA. We show how this model can be used to determine near-surface rock strength and reproduce mapped landslide patterns provided the spatial distribution of local hillslope gradient, earthquake peak ground acceleration (PGA), and coseismic landsliding are well constrained. Results suggest that near-surface rock strength in these tectonically active settings is much lower than that

An exhaustive approach for identification of flood risk hotspots in data poor regions enforcing combined geomorphic and socio-economic indicators

NASA Astrophysics Data System (ADS)

Mohanty, M. P.; Karmakar, S.; Ghosh, S.

2017-12-01

Many countries across the Globe are victims of floods. To monitor them, various sophisticated algorithms and flood models are used by the scientific community. However, there still lies a gap to efficiently mapping flood risk. The limitations being: (i) scarcity of extensive data inputs required for precise flood modeling, (ii) fizzling performance of models in large and complex terrains (iii) high computational cost and time, and (iv) inexpertise in handling model simulations by civic bodies. These factors trigger the necessity of incorporating uncomplicated and inexpensive, yet precise approaches to identify areas at different levels of flood risk. The present study addresses this issue by utilizing various easily available, low cost data in a GIS environment for a large flood prone and data poor region. A set of geomorphic indicators of Digital Elevation Model (DEM) are analysed through linear binary classification, and are used to identify the flood hazard. The performance of these indicators is then investigated using receiver operating characteristics (ROC) curve, whereas the calibration and validation of the derived flood maps are accomplished through a comparison with dynamically coupled 1-D 2-D flood model outputs. A high degree of similarity on flood inundation proves the reliability of the proposed approach in identifying flood hazard. On the other hand, an extensive list of socio-economic indicators is selected to represent the flood vulnerability at a very finer forward sortation level using multivariate Data Envelopment Analysis (DEA). A set of bivariate flood risk maps is derived combining the flood hazard and socio-economic vulnerability maps. Given the acute problem of floods in developing countries, the proposed methodology which may be characterized by low computational cost, lesser data requirement and limited flood modeling complexity may facilitate local authorities and planners for deriving effective flood management strategies.

Identifying data gaps and prioritizing restoration strategies for Fremont cottonwood using linked geomorphic and population models

NASA Astrophysics Data System (ADS)

Harper, E. B.; Stella, J. C.; Fremier, A. K.

2009-12-01

Fremont cottonwood (Populus fremontii) is an important component of semi-arid riparian ecosystems throughout western North America, but its populations are in decline due to flow regulation. Achieving a balance between human resource needs and riparian ecosystem function requires a mechanistic understanding of the multiple geomorphic and biological factors affecting tree recruitment and survival, including the timing and magnitude of river flows, and the concomitant influence on suitable habitat creation and mortality from scour and sedimentation burial. Despite a great deal of empirical research on some components of the system, such as factors affecting cottonwood recruitment, other key components are less studied. Yet understanding the relative influence of the full suite of physical and life-history drivers is critical to modeling whole-population dynamics under changing environmental conditions. We addressed these issues for the Fremont cottonwood population along the Sacramento River, CA using a sensitivity analysis approach to quantify uncertainty in parameters on the outcomes of a patch-based, dynamic population model. Using a broad range of plausible values for 15 model parameters that represent key physical, biological and climatic components of the ecosystem, we ran 1,000 population simulations that consisted of a subset of 14.3 million possible combinations of parameter estimates to predict the frequency of patch colonization and total forest habitat predicted to occur under current hydrologic conditions after 175 years. Results indicate that Fremont cottonwood populations are highly sensitive to the interactions among flow regime, sedimentation rate and the depth of the capillary fringe (Fig. 1). Estimates of long-term floodplain sedimentation rate would substantially improve model accuracy. Spatial variation in sediment texture was also important to the extent that it determines the depth of the capillary fringe, which regulates the availability of

Analyses and descriptions of geochemical samples from the Rich Mountain Roadless Area, Fannin and Gilmer counties, Georgia

USGS Publications Warehouse

Sears, C.M.; Foose, M.P.; Day, G.W.; Ericksen, M.S.

1983-01-01

Semi-quantitative spectrographic analyses for 31 elements on rock, soil, fine-grained stream sediment, bulk stream sediment, and panned stream sediment samples collected in the Rich Mountain Roadless Area, Fannin and Gilmer Counties, Georgia, are reported here. Atomic absorption analyses for gold and fluorometric analyses for uranium are also reported. Brief descriptions of all rock samples analyzed are included.

Continuous Measurements of Eyeball Area and Their Spectrum Analyses -- Toward the Quantification of Rest Rhythm of Horses by Image Processing

DTIC Science & Technology

2001-10-25

analyses of electroencephalogram at half- closed eye and fully closed eye. This study aimed at quantitative estimating rest rhythm of horses by the...analyses of eyeball movement. The mask attached with a miniature CCD camera was newly developed. The continuous images of the horse eye for about 24...eyeball area were calculated. As for the results, the fluctuating status of eyeball area was analyzed quantitatively, and the rest rhythm of horses was

Valley Network Morphology and Topographic Gradients on Mars

NASA Technical Reports Server (NTRS)

Aharonson, Oded; Zuber, Maria T.; Rothman, Daniel H.; Schorghofer, Norbert; Phillips, Roger J.; Williams, Rebecca M. E.

2001-01-01

Data returned from the Mars Orbiter Laser Altimeter allows construction of a high precision digital elevation model. Quantitative investigations into the geomorphic properties of drainage features, similar to ones carried out on Earth, are now possible Additional information is contained in the original extended abstract.

Quantitative microbiome profiling links gut community variation to microbial load.

PubMed

Vandeputte, Doris; Kathagen, Gunter; D'hoe, Kevin; Vieira-Silva, Sara; Valles-Colomer, Mireia; Sabino, João; Wang, Jun; Tito, Raul Y; De Commer, Lindsey; Darzi, Youssef; Vermeire, Séverine; Falony, Gwen; Raes, Jeroen

2017-11-23

Current sequencing-based analyses of faecal microbiota quantify microbial taxa and metabolic pathways as fractions of the sample sequence library generated by each analysis. Although these relative approaches permit detection of disease-associated microbiome variation, they are limited in their ability to reveal the interplay between microbiota and host health. Comparative analyses of relative microbiome data cannot provide information about the extent or directionality of changes in taxa abundance or metabolic potential. If microbial load varies substantially between samples, relative profiling will hamper attempts to link microbiome features to quantitative data such as physiological parameters or metabolite concentrations. Saliently, relative approaches ignore the possibility that altered overall microbiota abundance itself could be a key identifier of a disease-associated ecosystem configuration. To enable genuine characterization of host-microbiota interactions, microbiome research must exchange ratios for counts. Here we build a workflow for the quantitative microbiome profiling of faecal material, through parallelization of amplicon sequencing and flow cytometric enumeration of microbial cells. We observe up to tenfold differences in the microbial loads of healthy individuals and relate this variation to enterotype differentiation. We show how microbial abundances underpin both microbiota variation between individuals and covariation with host phenotype. Quantitative profiling bypasses compositionality effects in the reconstruction of gut microbiota interaction networks and reveals that the taxonomic trade-off between Bacteroides and Prevotella is an artefact of relative microbiome analyses. Finally, we identify microbial load as a key driver of observed microbiota alterations in a cohort of patients with Crohn's disease, here associated with a low-cell-count Bacteroides enterotype (as defined through relative profiling).

High resolution rare-earth elements analyses of natural apatite and its application in geo-sciences: Combined micro-PIXE, quantitative CL spectroscopy and electron spin resonance analyses

NASA Astrophysics Data System (ADS)

Habermann, D.; Götte, T.; Meijer, J.; Stephan, A.; Richter, D. K.; Niklas, J. R.

2000-03-01

The rare-earth element (REE) distribution in natural apatite is analysed by micro-PIXE, cathodoluminescence (CL) microscopy and spectroscopy and electron spin resonance (ESR) spectroscopy. The micro-PIXE analyses of an apatite crystal from Cerro de Mercado (Mexico) and the summary of 20 analyses of six francolite (conodonts of Triassic age) samples indicate that most of the REEs are enriched in apatite and francolite comparative to average shale standard (NASC). The analyses of fossil francolite revealing the REE-distribution not to be in balance with the REE-distribution of seawater and fish bone debris. Strong inhomogenous lateral REE-distribution in fossil conodont material is shown by CL-mapping and most probably not being a vital effect. Therefore, the resulting REE-signal from fossil francolite is the sum of vital and post-mortem incorporation. The necessary charge compensation for the substitution of divalent Ca by trivalent REE being done by different kind of electron defects and defect ions.

Spatial Analysis of Large Woody Debris Arrangement in a Midwestern U.S. River System: Geomorphic Implications and Influences

NASA Astrophysics Data System (ADS)

Martin, D. J.

2013-12-01

Large woody debris (LWD) is universally recognized as a key component of the geomorphological and ecological function of fluvial systems and has been increasingly incorporated into stream restoration and watershed management projects. However, 'natural' processes of recruitment and the subsequent arrangement of LWD within the river network are poorly understood and are thus, rarely a management consideration. Additionally, LWD research tends to be regionally biased toward mountainous regions, and scale biased toward the micro-scale. In many locations, the lack of understanding has led to the failure of restoration/rehabilitation projects that involved the use of LWD. This research uses geographic information systems and spatial analysis techniques to investigate longitudinal arrangement patterns of LWD in a low-gradient, Midwestern river. A large-scale GPS inventory of LWD was performed on the Big River, located in the eastern Missouri Ozarks resulting in over 5,000 logged positions of LWD along seven river segments covering nearly 100 km of the 237 km river system. A time series analysis framework was used to statistically identify longitudinal spatial patterns of LWD arrangement along the main stem of the river, and correlation analyses were performed to help identify physical controls of those patterns. Results indicate that upstream segments have slightly lower densities than downstream segments, with the exception of the farthest upstream segment. Results also show lack of an overall longitudinal trend in LWD density; however, periodogram analysis revealed an inherent periodicity in LWD arrangement. Periodicities were most evident in the downstream segments with frequencies ranging from 3 km to 7 km. Additionally, Pearson correlation analysis, performed within the segment displaying the strongest periodic behavior, show that LWD densities are correlated with channel sinuosity (r=0.25). Ongoing research is investigating further relationships between arrangement

Qualitative and quantitative studies of chemical composition of sandarac resin by GC-MS.

PubMed

Kononenko, I; de Viguerie, L; Rochut, S; Walter, Ph

2017-01-01

The chemical composition of sandarac resin was investigated qualitatively and quantitatively by gas chromatography-mass spectrometry (GC-MS). Six compounds with labdane and pimarane skeletons were identified in the resin. The obtained mass spectra were interpreted and the mass spectrometric behaviour of these diterpenoids under EI conditions was described. Quantitative analysis by the method of internal standard revealed that identified diterpenoids represent only 10-30% of the analysed sample. The sandarac resin from different suppliers was analysed (from Kremer, Okhra, Color Rare, La Marchande de Couleurs, L'Atelier Montessori, Hevea). The analysis of different lumps of resins showed that the chemical composition differs from one lump to another, varying mainly in the relative distributions of the components.

Analyses on Regional Cultivated Land Changebased on Quantitative Method

NASA Astrophysics Data System (ADS)

Cao, Yingui; Yuan, Chun; Zhou, Wei; Wang, Jing

Three Gorges Project is the great project in the world, which accelerates economic development in the reservoir area of Three Gorges Project. In the process of development in the reservoir area of Three Gorges Project, cultivated land has become the important resources, a lot of cultivated land has been occupied and become the constructing land. In the same time, a lot of cultivated land has been flooded because of the rising of the water level. This paper uses the cultivated land areas and social economic indicators of reservoir area of Three Gorges in 1990-2004, takes the statistic analyses and example research in order to analyze the process of cultivated land, get the driving forces of cultivated land change, find the new methods to stimulate and forecast the cultivated land areas in the future, and serve for the cultivated land protection and successive development in reservoir area of Three Gorges. The results indicate as follow, firstly, in the past 15 years, the cultivated land areas has decreased 200142 hm2, the decreasing quantity per year is 13343 hm2. The whole reservoir area is divided into three different areas, they are upper reaches area, belly area and lower reaches area. The trends of cultivated land change in different reservoir areas are similar to the whole reservoir area. Secondly, the curve of cultivated land areas and per capita GDP takes on the reverse U, and the steps between the change rate of cultivated land and the change rate of GDP are different in some years, which indicates that change of cultivated land and change of GDP are decoupling, besides that, change of cultivated land is connection with the development of urbanization and the policy of returning forestry greatly. Lastly, the precision of multi-regression is lower than the BP neural network in the stimulation of cultivated land, then takes use of the BP neural network to forecast the cultivated land areas in 2005, 2010 and 2015, and the forecasting results are reasonable.

Quantitative Analyses of Core Promoters Enable Precise Engineering of Regulated Gene Expression in Mammalian Cells.

PubMed

Ede, Christopher; Chen, Ximin; Lin, Meng-Yin; Chen, Yvonne Y

2016-05-20

Inducible transcription systems play a crucial role in a wide array of synthetic biology circuits. However, the majority of inducible promoters are constructed from a limited set of tried-and-true promoter parts, which are susceptible to common shortcomings such as high basal expression levels (i.e., leakiness). To expand the toolbox for regulated mammalian gene expression and facilitate the construction of mammalian genetic circuits with precise functionality, we quantitatively characterized a panel of eight core promoters, including sequences with mammalian, viral, and synthetic origins. We demonstrate that this selection of core promoters can provide a wide range of basal gene expression levels and achieve a gradient of fold-inductions spanning 2 orders of magnitude. Furthermore, commonly used parts such as minimal CMV and minimal SV40 promoters were shown to achieve robust gene expression upon induction, but also suffer from high levels of leakiness. In contrast, a synthetic promoter, YB_TATA, was shown to combine low basal expression with high transcription rate in the induced state to achieve significantly higher fold-induction ratios compared to all other promoters tested. These behaviors remain consistent when the promoters are coupled to different genetic outputs and different response elements, as well as across different host-cell types and DNA copy numbers. We apply this quantitative understanding of core promoter properties to the successful engineering of human T cells that respond to antigen stimulation via chimeric antigen receptor signaling specifically under hypoxic environments. Results presented in this study can facilitate the design and calibration of future mammalian synthetic biology systems capable of precisely programmed functionality.

Spotsizer: High-throughput quantitative analysis of microbial growth.

PubMed

Bischof, Leanne; Převorovský, Martin; Rallis, Charalampos; Jeffares, Daniel C; Arzhaeva, Yulia; Bähler, Jürg

2016-10-01

Microbial colony growth can serve as a useful readout in assays for studying complex genetic interactions or the effects of chemical compounds. Although computational tools for acquiring quantitative measurements of microbial colonies have been developed, their utility can be compromised by inflexible input image requirements, non-trivial installation procedures, or complicated operation. Here, we present the Spotsizer software tool for automated colony size measurements in images of robotically arrayed microbial colonies. Spotsizer features a convenient graphical user interface (GUI), has both single-image and batch-processing capabilities, and works with multiple input image formats and different colony grid types. We demonstrate how Spotsizer can be used for high-throughput quantitative analysis of fission yeast growth. The user-friendly Spotsizer tool provides rapid, accurate, and robust quantitative analyses of microbial growth in a high-throughput format. Spotsizer is freely available at https://data.csiro.au/dap/landingpage?pid=csiro:15330 under a proprietary CSIRO license.

Quantitation and Identification of Intact Major Milk Proteins for High-Throughput LC-ESI-Q-TOF MS Analyses

PubMed Central

Vincent, Delphine; Elkins, Aaron; Condina, Mark R.; Ezernieks, Vilnis; Rochfort, Simone

2016-01-01

Cow’s milk is an important source of proteins in human nutrition. On average, cow’s milk contains 3.5% protein. The most abundant proteins in bovine milk are caseins and some of the whey proteins, namely beta-lactoglobulin, alpha-lactalbumin, and serum albumin. A number of allelic variants and post-translationally modified forms of these proteins have been identified. Their occurrence varies with breed, individuality, stage of lactation, and health and nutritional status of the animal. It is therefore essential to have reliable methods of detection and quantitation of these proteins. Traditionally, major milk proteins are quantified using liquid chromatography (LC) and ultra violet detection method. However, as these protein variants co-elute to some degree, another dimension of separation is beneficial to accurately measure their amounts. Mass spectrometry (MS) offers such a tool. In this study, we tested several RP-HPLC and MS parameters to optimise the analysis of intact bovine proteins from milk. From our tests, we developed an optimum method that includes a 20-28-40% phase B gradient with 0.02% TFA in both mobile phases, at 0.2 mL/min flow rate, using 75°C for the C8 column temperature, scanning every 3 sec over a 600–3000 m/z window. The optimisations were performed using external standards commercially purchased for which ionisation efficiency, linearity of calibration, LOD, LOQ, sensitivity, selectivity, precision, reproducibility, and mass accuracy were demonstrated. From the MS analysis, we can use extracted ion chromatograms (EICs) of specific ion series of known proteins and integrate peaks at defined retention time (RT) window for quantitation purposes. This optimum quantitative method was successfully applied to two bulk milk samples from different breeds, Holstein-Friesian and Jersey, to assess differences in protein variant levels. PMID:27749892

Quantitation and Identification of Intact Major Milk Proteins for High-Throughput LC-ESI-Q-TOF MS Analyses.

PubMed

Vincent, Delphine; Elkins, Aaron; Condina, Mark R; Ezernieks, Vilnis; Rochfort, Simone

2016-01-01

Cow's milk is an important source of proteins in human nutrition. On average, cow's milk contains 3.5% protein. The most abundant proteins in bovine milk are caseins and some of the whey proteins, namely beta-lactoglobulin, alpha-lactalbumin, and serum albumin. A number of allelic variants and post-translationally modified forms of these proteins have been identified. Their occurrence varies with breed, individuality, stage of lactation, and health and nutritional status of the animal. It is therefore essential to have reliable methods of detection and quantitation of these proteins. Traditionally, major milk proteins are quantified using liquid chromatography (LC) and ultra violet detection method. However, as these protein variants co-elute to some degree, another dimension of separation is beneficial to accurately measure their amounts. Mass spectrometry (MS) offers such a tool. In this study, we tested several RP-HPLC and MS parameters to optimise the analysis of intact bovine proteins from milk. From our tests, we developed an optimum method that includes a 20-28-40% phase B gradient with 0.02% TFA in both mobile phases, at 0.2 mL/min flow rate, using 75°C for the C8 column temperature, scanning every 3 sec over a 600-3000 m/z window. The optimisations were performed using external standards commercially purchased for which ionisation efficiency, linearity of calibration, LOD, LOQ, sensitivity, selectivity, precision, reproducibility, and mass accuracy were demonstrated. From the MS analysis, we can use extracted ion chromatograms (EICs) of specific ion series of known proteins and integrate peaks at defined retention time (RT) window for quantitation purposes. This optimum quantitative method was successfully applied to two bulk milk samples from different breeds, Holstein-Friesian and Jersey, to assess differences in protein variant levels.

Estimates of bridge scour at two sites on the Virgin River, southeastern Nevada, using a sediment-transport model and historical geomorphic data

USGS Publications Warehouse

Hilmes, M.M.; Vaill, J.E.

1997-01-01

A bridge-scour study by the U.S. Geological Survey, in cooperation with the Nevada Department of Transportation, began in April 1996 to evaluate the Mesquite, Nevada, and Riverside, Nevada, bridges on the lower Virgin River using a sediment-transport model and historical geomorphic data. The BRIdge Stream Tube model for Alluvial River Simulation (BRI-STARS) was used to estimate bridge scour. The model was first calibrated using data for the Virgin River flood of March 12, 1995. Surveyed channel-geometry data were available at 11 cross sections for dates before and after the March 1995 flood to allow for evaluation of the model results. The model estimated the thalweg altitude within plus or minus 1 meter at 10 of the 11 cross sections. The calibrated model then was used to estimate the contraction, channel, pier, and total scour for synthesized hydrographs for 100- and 500-year floods at the two bridge sites. The estimated maximum total scour at the Mesquite bridge was 1.30 meters for the 100-year flood and 1.32 meters for the 500-year flood. The maximum total scour at the Riverside bridge was 1.90 meters for the 100-year flood and 2.01 meters for the 500-year flood. General scour was evaluated using stage-discharge relations at nearby streamflow-gaging stations, 1993-95 channel-geometry data, and channel-geometry data for the 100- and 500-year floods. On the basis of stage and discharge at the Littlefield, Arizona, gaging station, no long-term trend in aggradation or degradation was found. However, several cycles of aggradation and degradation had occurred during the period of record; the difference between the highest and lowest stage was 0.87 meter for a chosen low-flow discharge of 5.66 cubic meters per second for 1929-95. The value of 0.87 meter is probably the best estimate of general scour. The cross sections had an average scour depth of 0.07 meter between 1993 and 1994 and 0.16 meter between 1994 and 1995. The model simulated little general scour for the

Coastal geomorphic conditions and styles of storm surge washover deposits from Southern Thailand

NASA Astrophysics Data System (ADS)

Phantuwongraj, Sumet; Choowong, Montri; Nanayama, Futoshi; Hisada, Ken-Ichiro; Charusiri, Punya; Chutakositkanon, Vichai; Pailoplee, Santi; Chabangbon, Akkaneewut

2013-06-01

The characteristics of tropical storm washover deposits laid down during the years 2007 to 2011 along the southern peninsular coast of the Gulf of Thailand (GOT) were described in relation to their different geomorphic conditions, including perched fan, washover terrace and sheetwash lineations preserved behind the beach zone within 100 m of the shoreline. As a result, washover terrace and sheetwash lineations were found where the beach configuration was uniform and promoted an unconfined flow. Non-uniform beach configurations that promoted a confined flow resulted in a perched fan deposit. Washover sediments were differentiated into two types based on sedimentary characteristics, including (i) a thick-bedded sand of multiple reverse grading layers and (ii) a medium-bedded sand of multiple normal grading layers. In the case of thick-bedded washover deposits, the internal sedimentary structures were characterized by the presence of sub-horizontal bedding, reverse grading, lamination, foreset bedding and wavy bedding, whereas, horizontal bedding, normal grading, and dunes were the dominant structures in the medium-bedded washover sand. Rip-up clasts were rare and recognized only in the washover deposits in the bottom unit, which reflects the condition when a mud supply was available. All washover successions were found in the landward inclined-bedding with a basal sharp contact. A high elevated beach ridge associated with a large swale at the backshore proved suitable for a thick-bedded washover type, whereas a small beach ridge with uniformly flat backshore topography promoted a medium-bedded washover sediment.