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Sample records for raman spectra cyclohexanone

  1. Cyclohexanone

    Integrated Risk Information System (IRIS)

    Cyclohexanone ; CASRN 108 - 94 - 1 Human health assessment information on a chemical substance is included in the IRIS database only after a comprehensive review of toxicity data , as outlined in the IRIS assessment development process . Sections I ( Health Hazard Assessments for Noncarcinogenic Eff

  2. Study on Raman spectra of synthetic celluloses

    NASA Astrophysics Data System (ADS)

    Tong, Na; Zhu, Changjun; Zhang, Yixin

    2015-02-01

    Raman spectrometry was employed to study the characteristics of Raman spectra of aliphatic polyamide fiber and polyethylene terephthalate (PET), which were treated with sodium hydroxide, sulfuric acid and copper sulfate, respectively. Raman spectra under different conditions were obtained and the characteristics of the Raman spectra were analyzed. The results show that Raman peaks beyond 1200 cm-1 appear for aliphatic polyamide fiber processed by sodium hydroxide, while the Raman peaks beyond 1000 cm-1 disappear for aliphatic polyamide fiber processed by sulfuric acid. Raman peaks beyond 1750 cm-1 decrease for polyethylene terephthalate processed by sodium hydroxide, while Raman peaks beyond 1000 cm-1 disappear, except weak peaks around 3000 cm-1 , for polyethylene terephthalate processed by sulfuric acid. The variations of the Raman spectra are primarily related to the changes of chemical bonds and molecular structures.

  3. Spectroscopic (infrared, Raman, UV and NMR) analysis, Gaussian hybrid computational investigation (MEP maps/HOMO and LUMO) on cyclohexanone oxime.

    PubMed

    Ramalingam, S; Karabacak, M; Periandy, S; Puviarasan, N; Tanuja, D

    2012-10-01

    In the present analysis, FT-IR/FT-Raman spectra of the cyclohexanone oxime (CHO, C(6)H(11)NO) are recorded. The observed vibrational frequencies are assigned and the computational calculations are carried out by HF and DFT (B3LYP and B3PW91) methods with 6-311++G(d,p) basis set and the corresponding results are tabulated. In order to yield good coherence with observed values, the calculated frequencies are scaled by appropriate scale factors. The complete assignments are performed on the basis of the total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method. The alternation of structure of cyclohexanone due to the substitution of NOH is investigated. The vibrational sequence pattern of the molecule related to the substitutions is analyzed. Comparison of the observed fundamental vibrational frequencies of CHO and calculated results by density functional (B3LYP and B3PW91) and HF methods indicates that B3LYP is superior to the scaled HF and B3PW91 approach for molecular vibrational problems. Moreover, (13)C NMR and (1)H NMR chemical shifts are calculated by using the gauge independent atomic orbital (GIAO) method with HF/B3LYP/B3PW91 methods and the same basis set. A study on the electronic properties; absorption wavelengths, excitation energy, dipole moment and frontier molecular orbital energies, are performed by HF and DFT methods. The calculated HOMO and LUMO energies show that charge transfer occurs within the molecule. Besides frontier molecular orbitals (FMO), molecular electrostatic potential (MEP) was performed. NLO properties and Mulliken charges of the CHO was also calculated and interpreted. The thermodynamic properties (heat capacity, entropy, and enthalpy) of the title compound at different temperatures are calculated in gas phase.

  4. Spectroscopic (infrared, Raman, UV and NMR) analysis, Gaussian hybrid computational investigation (MEP maps/HOMO and LUMO) on cyclohexanone oxime

    NASA Astrophysics Data System (ADS)

    Ramalingam, S.; Karabacak, M.; Periandy, S.; Puviarasan, N.; Tanuja, D.

    2012-10-01

    In the present analysis, FT-IR/FT-Raman spectra of the cyclohexanone oxime (CHO, C6H11NO) are recorded. The observed vibrational frequencies are assigned and the computational calculations are carried out by HF and DFT (B3LYP and B3PW91) methods with 6-311++G(d,p) basis set and the corresponding results are tabulated. In order to yield good coherence with observed values, the calculated frequencies are scaled by appropriate scale factors. The complete assignments are performed on the basis of the total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method. The alternation of structure of cyclohexanone due to the substitution of NOH is investigated. The vibrational sequence pattern of the molecule related to the substitutions is analyzed. Comparison of the observed fundamental vibrational frequencies of CHO and calculated results by density functional (B3LYP and B3PW91) and HF methods indicates that B3LYP is superior to the scaled HF and B3PW91 approach for molecular vibrational problems. Moreover, 13C NMR and 1H NMR chemical shifts are calculated by using the gauge independent atomic orbital (GIAO) method with HF/B3LYP/B3PW91 methods and the same basis set. A study on the electronic properties; absorption wavelengths, excitation energy, dipole moment and frontier molecular orbital energies, are performed by HF and DFT methods. The calculated HOMO and LUMO energies show that charge transfer occurs within the molecule. Besides frontier molecular orbitals (FMO), molecular electrostatic potential (MEP) was performed. NLO properties and Mulliken charges of the CHO was also calculated and interpreted. The thermodynamic properties (heat capacity, entropy, and enthalpy) of the title compound at different temperatures are calculated in gas phase.

  5. Spectroscopic (infrared, Raman, UV and NMR) analysis, Gaussian hybrid computational investigation (MEP maps/HOMO and LUMO) on cyclohexanone oxime.

    PubMed

    Ramalingam, S; Karabacak, M; Periandy, S; Puviarasan, N; Tanuja, D

    2012-10-01

    In the present analysis, FT-IR/FT-Raman spectra of the cyclohexanone oxime (CHO, C(6)H(11)NO) are recorded. The observed vibrational frequencies are assigned and the computational calculations are carried out by HF and DFT (B3LYP and B3PW91) methods with 6-311++G(d,p) basis set and the corresponding results are tabulated. In order to yield good coherence with observed values, the calculated frequencies are scaled by appropriate scale factors. The complete assignments are performed on the basis of the total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method. The alternation of structure of cyclohexanone due to the substitution of NOH is investigated. The vibrational sequence pattern of the molecule related to the substitutions is analyzed. Comparison of the observed fundamental vibrational frequencies of CHO and calculated results by density functional (B3LYP and B3PW91) and HF methods indicates that B3LYP is superior to the scaled HF and B3PW91 approach for molecular vibrational problems. Moreover, (13)C NMR and (1)H NMR chemical shifts are calculated by using the gauge independent atomic orbital (GIAO) method with HF/B3LYP/B3PW91 methods and the same basis set. A study on the electronic properties; absorption wavelengths, excitation energy, dipole moment and frontier molecular orbital energies, are performed by HF and DFT methods. The calculated HOMO and LUMO energies show that charge transfer occurs within the molecule. Besides frontier molecular orbitals (FMO), molecular electrostatic potential (MEP) was performed. NLO properties and Mulliken charges of the CHO was also calculated and interpreted. The thermodynamic properties (heat capacity, entropy, and enthalpy) of the title compound at different temperatures are calculated in gas phase. PMID:22683556

  6. Near infrared Raman spectra of Rhizoma dioscoreae

    NASA Astrophysics Data System (ADS)

    Lin, Wenshuo; Chen, Rong; Chen, Guannan; Feng, Sangyuan; Li, Yongzeng; Huang, Zufang; Li, Yongsen

    2008-03-01

    A novel and compact near-infrared (NIR) Raman system is developed using 785-nm diode laser, volume-phase technology holographic system, and NIR intensified charge-coupled device (CCD). Raman spectra and first derivative spectra of Rhizoma Dioscoreae are obtained. Raman spectra of Rhizoma Dioscoreae showed three strong characteristic peaks at 477.4cm -1, 863.9cm -1, and 936.0cm -1. The major ingredients are protein, amino acid, starch, polysaccharides and so on, matched with the known basic biochemical composition of Rhizoma Dioscoreae. In the first derivative spectra of Rhizoma Dioscoreae, distinguishing characteristic peaks appeared at 467.674cm -1, 484.603cm -1, 870.37cm -1, 943.368cm -1. Contrasted with Rhizoma Dioscoreae Raman spectra, in 600cm -1 to 800cm -1, 1000cm -1 to 1400cm -1 regions, changes in Rhizoma Dioscoreae Raman first derivative spectra are represented more clearly than Rhizoma Dioscoreae Raman spectra. So Rhizoma Dioscoreae raman first derivative spectra can be an accurate supplementary analysis method to Rhizoma Dioscoreae Raman spectra.

  7. Investigation of Raman spectra of polyethylene terephthalate

    NASA Astrophysics Data System (ADS)

    Zhu, Changjun; Tong, Na; Song, Lixin; Zhang, Guoqing

    2015-08-01

    Raman spectrometry was employed to study the characteristics of Raman spectra of polyethylene terephthalate (PET), which were treated with sodium hydroxide, sulfuric acid and copper sulfate, respectively. Raman spectra under different conditions were obtained and the characteristics of the Raman spectra were analyzed. The morphology structures were observed under different conditions using Atomic Force Microscope. The results show that the spectral intensity of PET treated with sodium hydroxide is higher than that untreated between 200-1750 cm-1, while the intensity of PET treated with sodium hydroxide is lower than that untreated beyond 1750 cm-1 and the fluorescence background of Raman spectra is decreased. The spectral intensity of PET treated with sulfuric acid is remarkably reduced than that untreated, and the intensity of PET treated with copper sulphate is much higher than that untreated.

  8. [Characteristics of Raman Spectra of Polyethylene Terephthalate].

    PubMed

    Tong, Na; Zhu, Chang-jun; Song, Li-xun; Zhang, Chong-hui; Zhang, Guo-qing; Zhang, Yi-xin

    2016-01-01

    Raman spectrometry was employed to study the characteristics of Raman spectra of polyethylene terephthalate (PET), which were treated with sodium hydroxide, sulfuric acid and copper sulfate, respectively. Raman spectra under different conditions were obtained and the characteristics of the Raman spectra were analyzed. The morphology structures were observed under different conditions using Atomic Force Microscope. The results show that the spectral intensity of PET treated with sodium hydroxide is higher than that untreated between 200-1 750 cm(-1), while the intensity of PET treated with sodium hydroxide is lower than that untreated beyond 1 750 cm(-1) and the fluorescence background of Raman spectra is decreased. The spectral intensity of PET treated with sulfuric acid is remarkably reduced than that untreated, and the intensity of PET treated with copper sulphate is much higher than that untreated. The research results obtained by Atomic Force Microscopy show that the variations of the Raman spectra of PET fibers are closely related to. the chemical bonds and molecular structures of PET fibers. The surface of the PET treated with sodium hydroxide is rougher than that untreated, the surface roughness of the PET treated with sulfuric acid is reduced as compared to that untreated, while the surface roughness of the PET treated with copper sulphate is increased. The results obtained by Raman spectroscopy are consistent with those by Atomic Force Microscopy, indicating that the combination of Raman spectroscopy and Atomic Force Microscopy is expected to be a promising characterization technology for polymer characteristics. PMID:27228752

  9. [Characteristics of Raman Spectra of Polyethylene Terephthalate].

    PubMed

    Tong, Na; Zhu, Chang-jun; Song, Li-xun; Zhang, Chong-hui; Zhang, Guo-qing; Zhang, Yi-xin

    2016-01-01

    Raman spectrometry was employed to study the characteristics of Raman spectra of polyethylene terephthalate (PET), which were treated with sodium hydroxide, sulfuric acid and copper sulfate, respectively. Raman spectra under different conditions were obtained and the characteristics of the Raman spectra were analyzed. The morphology structures were observed under different conditions using Atomic Force Microscope. The results show that the spectral intensity of PET treated with sodium hydroxide is higher than that untreated between 200-1 750 cm(-1), while the intensity of PET treated with sodium hydroxide is lower than that untreated beyond 1 750 cm(-1) and the fluorescence background of Raman spectra is decreased. The spectral intensity of PET treated with sulfuric acid is remarkably reduced than that untreated, and the intensity of PET treated with copper sulphate is much higher than that untreated. The research results obtained by Atomic Force Microscopy show that the variations of the Raman spectra of PET fibers are closely related to. the chemical bonds and molecular structures of PET fibers. The surface of the PET treated with sodium hydroxide is rougher than that untreated, the surface roughness of the PET treated with sulfuric acid is reduced as compared to that untreated, while the surface roughness of the PET treated with copper sulphate is increased. The results obtained by Raman spectroscopy are consistent with those by Atomic Force Microscopy, indicating that the combination of Raman spectroscopy and Atomic Force Microscopy is expected to be a promising characterization technology for polymer characteristics.

  10. NBO analysis and vibrational spectra of 2,6-bis(p-methyl benzylidene cyclohexanone) using density functional theory

    NASA Astrophysics Data System (ADS)

    Padmaja, L.; Amalanathan, M.; Ravikumar, C.; Hubert Joe, I.

    2009-10-01

    Vibrational analysis of the 2,6-bis(p-methyl benzylidene cyclohexanone) [PMBC] compound was carried out by using NIR FT-Raman and FT-IR spectroscopic techniques. The equilibrium geometry, various bonding features and harmonic vibrational frequencies of PMBC have been investigated with the help of B3LYP/6-31G(d) density functional theory method. The optimized geometry clearly demonstrates cyclohexanone ring chair conformation is changed into half-chair conformation. The shortening of C-H bond length and blue shifting of the CH stretching wavenumber suggest the existence of improper weak C-H⋯O hydrogen bonding, which is confirmed by the natural bond orbital analysis. The Mulliken population analysis on atomic charges and the HOMO-LUMO energy are also calculated.

  11. Molecular structure and vibrational spectra of 2,6-bis(benzylidene)cyclohexanone: a density functional theoretical study.

    PubMed

    Sajan, D; Udaya Lakshmi, K; Erdogdu, Y; Joe, I Hubert

    2011-01-01

    The near-infrared Fourier transform (NIR-FT) Raman and Fourier transform infrared (FT-IR) spectral analyses of 2,6-bis(benzylidene)cyclohexanone (BBC) molecule, a potential drugs for the treatment of P388 leukemia cells, were carried out along with density functional computations. The optimized geometry of BBC using density functional theory shows that the energetically favored chair conformation is not observed for central cyclohexanone ring and is found to possess a nearly 'half chair' conformation and shows less expansion of the angles and more rotation about the bonds. The existence of intramolecular C-H⋯O improper, blue-shifted hydrogen bond was investigated by means of the NBO analysis. The lowering of carbonyl stretching vibration can be attributed to the mesomeric effect and the π-orbital conjugation induced by the unsaturation in the α-carbon atoms and co-planarity of the (-CH=C-(C=O)-C=CH-) group.

  12. NBO analysis and vibrational spectra of 2,6-bis(p-methyl benzylidene cyclohexanone) using density functional theory.

    PubMed

    Padmaja, L; Amalanathan, M; Ravikumar, C; Hubert Joe, I

    2009-10-01

    Vibrational analysis of the 2,6-bis(p-methyl benzylidene cyclohexanone) [PMBC] compound was carried out by using NIR FT-Raman and FT-IR spectroscopic techniques. The equilibrium geometry, various bonding features and harmonic vibrational frequencies of PMBC have been investigated with the help of B3LYP/6-31 G(d) density functional theory method. The optimized geometry clearly demonstrates cyclohexanone ring chair conformation is changed into half-chair conformation. The shortening of C-H bond length and blue shifting of the CH stretching wavenumber suggest the existence of improper weak C-H***O hydrogen bonding, which is confirmed by the natural bond orbital analysis. The Mulliken population analysis on atomic charges and the HOMO-LUMO energy are also calculated.

  13. Raman spectra of carotenoids in natural products.

    PubMed

    Withnall, Robert; Chowdhry, Babur Z; Silver, Jack; Edwards, Howell G M; de Oliveira, Luiz F C

    2003-08-01

    Resonance Raman spectra of naturally occurring carotenoids have been obtained from nautilus, periwinkle (Littorina littorea) and clam shells under 514.5 nm excitation and these spectra are compared with the resonance Raman spectra obtained in situ from tomatoes, carrots, red peppers and saffron. The tomatoes, carrots and red peppers gave rise to resonance Raman spectra exhibiting a nu1 band at ca. 1520 cm(-1), in keeping with its assignment to carotenoids with ca. nine conjugated carbon-carbon double bonds in their main chains, whereas the resonance Raman spectrum of saffron showed a nu1 band at 1537 cm(-1) which can be assigned to crocetin, having seven conjugated carbon-carbon double bonds. A correlation between nu1 wavenumber location and effective conjugated chain length has been used to interpret the data obtained from the shells, and the wavenumber position (1522 cm(-1)) of the nu1 band of the carotenoid in the orange clam shell suggests that it contains nine conjugated double bonds in the main chain. However, the black periwinkle and nautilus shells exhibit nu1 bands at 1504 and 1496 cm(-1), respectively. On the basis of the correlation between nu1 wavenumber location and effective conjugated chain length, this indicates that they contain carotenoids with longer conjugated chains, the former having ca. 11 double bonds and the latter ca. 13 or even more. Raman spectra of the nautilus, periwinkle and clam shells also exhibited a strong band at 1085 cm(-1) and a doublet with components at 701 and 705 cm(-1), which can be assigned to biogenic calcium carbonate in the aragonite crystallographic form. PMID:12909134

  14. Raman spectra of carotenoids in natural products

    NASA Astrophysics Data System (ADS)

    Withnall, Robert; Chowdhry, Babur Z.; Silver, Jack; Edwards, Howell G. M.; de Oliveira, Luiz F. C.

    2003-08-01

    Resonance Raman spectra of naturally occurring carotenoids have been obtained from nautilus, periwinkle ( Littorina littorea) and clam shells under 514.5 nm excitation and these spectra are compared with the resonance Raman spectra obtained in situ from tomatoes, carrots, red peppers and saffron. The tomatoes, carrots and red peppers gave rise to resonance Raman spectra exhibiting a ν1 band at ca. 1520 cm -1, in keeping with its assignment to carotenoids with ca. nine conjugated carboncarbon double bonds in their main chains, whereas the resonance Raman spectrum of saffron showed a ν1 band at 1537 cm -1 which can be assigned to crocetin, having seven conjugated carboncarbon double bonds. A correlation between ν1 wavenumber location and effective conjugated chain length has been used to interpret the data obtained from the shells, and the wavenumber position (1522 cm -1) of the ν1 band of the carotenoid in the orange clam shell suggests that it contains nine conjugated double bonds in the main chain. However, the black periwinkle and nautilus shells exhibit ν1 bands at 1504 and 1496 cm -1, respectively. On the basis of the correlation between ν1 wavenumber location and effective conjugated chain length, this indicates that they contain carotenoids with longer conjugated chains, the former having ca. 11 double bonds and the latter ca. 13 or even more. Raman spectra of the nautilus, periwinkle and clam shells also exhibited a strong band at 1085 cm -1 and a doublet with components at 701 and 705 cm -1, which can be assigned to biogenic calcium carbonate in the aragonite crystallographic form.

  15. [Raman spectra of monkey cerebral cortex tissue].

    PubMed

    Zhu, Ji-chun; Guo, Jian-yu; Cai, Wei-ying; Wang, Zu-geng; Sun, Zhen-rong

    2010-01-01

    Monkey cerebral cortex, an important part in the brain to control action and thought activities, is mainly composed of grey matter and nerve cell. In the present paper, the in situ Raman spectra of the cerebral cortex of the birth, teenage and aged monkeys were achieved for the first time. The results show that the Raman spectra for the different age monkey cerebral cortex exhibit most obvious changes in the regions of 1000-1400 and 2800-3000 cm(-1). With monkey growing up, the relative intensities of the Raman bands at 1313 and 2885 cm(-1) mainly assigned to CH2 chain vibrational mode of lipid become stronger and stronger whereas the relative intensities of the Raman bands at 1338 and 2932 cm(-1) mainly assigned to CH3 chain vibrational mode of protein become weaker and weaker. In addition, the two new Raman bands at 1296 and 2850 cm(-1) are only observed in the aged monkey cerebral cortex, therefore, the two bands can be considered as a character or "marker" to differentiate the caducity degree with monkey growth In order to further explore the changes, the relative intensity ratios of the Raman band at 1313 cm(-1) to that at 1338 cm(-1) and the Raman band at 2885 cm(-1) to that at 2 932 cm(-1), I1313/I1338 and I2885/I2932, which are the lipid-to-protein ratios, are introduced to denote the degree of the lipid content. The results show that the relative intensity ratios increase significantly with monkey growth, namely, the lipid content in the cerebral cortex increases greatly with monkey growth. So, the authors can deduce that the overmuch lipid is an important cause to induce the caducity. Therefore, the results will be a powerful assistance and valuable parameter to study the order of life growth and diagnose diseases.

  16. Ab initio infrared and Raman spectra

    NASA Technical Reports Server (NTRS)

    Fredkin, D. R.; White, S. R.; Wilson, K. R.; Komornicki, A.

    1983-01-01

    It is pointed out that with increased computer power and improved computational techniques, such as the gradients developed in recent years, it is becoming practical to compute spectra ab initio, from the fundamental constants of nature, for systems of increasing complexity. The present investigation has the objective to explore several possible ab initio approaches to spectra, giving particular attention to infrared and nonresonance Raman. Two approaches are discussed. The sequential approach, in which first the electronic part and then later the nuclear part of the Born-Oppenheimer approximation is solved, is appropriate for small systems. The simultaneous approach, in which the electronic and nuclear parts are solved at the same time, is more appropriate for many-atom systems. A review of the newer quantum gradient techniques is provided, and the infrared and Raman spectral band contours for the water molecule are computed.

  17. Raman spectra of deuteriated taurine single crystals

    NASA Astrophysics Data System (ADS)

    Souza, J. M. de; Lima, R. J. C.; Freire, P. T. C.; Sasaki, J. M.; Melo, F. E. A.; Filho, J. Mendes; Jones, Derry W.

    2005-05-01

    The polarized Raman spectra of partially deuteriated taurine [(ND 3+) 0.65(NH 3+) 0.35(CH 2) 2SO 3-] crystals from x( zz) x and x( zy) x scattering geometries of the A g and B g irreducible representations of the factor group C 2h are reported. The temperature-dependent Raman spectra of partially deuteriated taurine do not reveal any evidence of the structural phase transition undergone by normal taurine at about 250 K, but an anomaly observed in the 180 cm -1 band at ˜120 K implies a different dynamic for this band (which is involved in a pressure-induced phase transition) in the deuteriated crystal.

  18. Raman spectra of shocked minerals. I. Olivine

    SciTech Connect

    Heymann, D.; Celucci, T.A.

    1988-12-01

    The Raman spectra of olivine contained in a chip of the Twin Sisters Peak (Washington) dunite shocked to 22.2 GPa is shown to be identical to that of unshocked olivine in the same rock. The Raman spectra of powder of the rock shocked to 20.1 GPa and of chips shocked to 59.5 GPa and 60.7 GPa display strong and broad low-frequency features with crests at 475/cm, 556/cm, and 572/cm, and broad high-frequency features near 1100/cm. It is suggested that these features are due to the formation of olivine glass with a considerable degree of three-dimensional Si-O-Si linkage having scattered domains of greatly variable grain size, internal structure, and chemical composition. 54 references.

  19. Raman spectra of shocked minerals. I - Olivine

    NASA Technical Reports Server (NTRS)

    Heymann, D.; Celucci, T. A.

    1988-01-01

    The Raman spectra of olivine contained in a chip of the Twin Sisters Peak (Washington) dunite shocked to 22.2 GPa is shown to be identical to that of unshocked olivine in the same rock. The Raman spectra of powder of the rock shocked to 20.1 GPa and of chips shocked to 59.5 GPa and 60.7 GPa display strong and broad low-frequency features with crests at 475/cm, 556/cm, and 572/cm, and broad high-frequency features near 1100/cm. It is suggested that these features are due to the formation of olivine glass with a considerable degree of three-dimensional Si-O-Si linkage having scattered domains of greatly variable grain size, internal structure, and chemical composition.

  20. Raman spectra of seven interplanetary dust particles

    NASA Technical Reports Server (NTRS)

    Xu, Yin-Lin; Yu, Min; Fan, Chang-Yun

    1992-01-01

    The Raman shift spectra of seven interplanetary dust particles, U2034(F10), U2034(F8), U2022(B1), W7074 18, W7074 C15, W7074 C3 and W7074 A7, were measured with a Spex-1403 Raman spectrograph. The exciting radiations were the 488 nm and 514 nm line of a 5W argon ion laser. All seven spectra exhibit the 1350 and 1600 Delta/cm arbon bands, implying that the Interplanetary dust particles were coated with hydrocarbon and incompletely crystallized carbon, the part of which may be the residue of hydrocarbon contents in the particles after water loss by the heating during their entry into the earth's atmosphere. A weak band structure in the 520-610/cm range could be caused by cyclosilicates, and a weak band at 2900/cm is tentatively identified as due to hydrocarbon molecules.

  1. Molecular structure and vibrational spectra of 2,6-bis(benzylidene)cyclohexanone: A density functional theoretical study

    NASA Astrophysics Data System (ADS)

    Sajan, D.; Udaya Lakshmi, K.; Erdogdu, Y.; Hubert Joe, I.

    2011-01-01

    The near-infrared Fourier transform (NIR-FT) Raman and Fourier transform infrared (FT-IR) spectral analyses of 2,6-bis(benzylidene)cyclohexanone (BBC) molecule, a potential drugs for the treatment of P388 leukemia cells, were carried out along with density functional computations. The optimized geometry of BBC using density functional theory shows that the energetically favored chair conformation is not observed for central cyclohexanone ring and is found to possess a nearly 'half chair' conformation and shows less expansion of the angles and more rotation about the bonds. The existence of intramolecular C-H⋯O improper, blue-shifted hydrogen bond was investigated by means of the NBO analysis. The lowering of carbonyl stretching vibration can be attributed to the mesomeric effect and the π-orbital conjugation induced by the unsaturation in the α-carbon atoms and co-planarity of the (-CH dbnd C-(C dbnd O)-C dbnd CH-) group.

  2. Fourier transform Raman and IR spectra of snake skin

    NASA Astrophysics Data System (ADS)

    Barry, B. W.; Williams, A. C.; Edwards, H. G. M.

    1993-06-01

    The Fourier transform (FT) Raman and IR spectra of the shed dorsal skin of the snake Elaphe obsoleta (American black rat snake) are reported. Vibrational spectroscopic assignments are proposed for the first time. Although good quality Raman spectra were obtained from the hinge regions using an FT Raman microscope, the dorsal scale regions fluoresced even with 1064 nm IR excitation. This was ascribed to pigmentation markings on the scales.

  3. Raman spectra of oxalates in lichen encrustations on Renaissance frescoes

    NASA Astrophysics Data System (ADS)

    Edwards, H. G. M.; Farwell, D. W.; Seaward, M. R. D.

    The vibrational Raman spectra of lichen encrustations on biodeteriorated Renaissance frescoes have been recorded using a laser Raman microprobe. The major chemical species identified in the encrustations is calcium oxalate. Other vibrational features in the Raman spectra have been assigned to fragments of the substratum incorporated from the biodeterioration process and to organic by-products of lichen metabolism such as erythrin, lecanoric acid and meso-erythritol.

  4. [Raman spectra of fossil dinosaurs from different regions].

    PubMed

    Yang, Qun; Wang, Yi-lin

    2007-12-01

    Raman microscopic spectra in the higher wave number region were obtained from 7 fossil dinosaurs specimens from different regions. The specimens of fossil dinosaurs are different parts of bone. The Raman spectra of fossil dinosaurs indicate the high similarity among peak positions of different fossil dinosaurs; but important differences exist in the spectral peak figures. In the wave number region of 1000-1800 cm(-1) the Raman spectra of the same bone part fossils from different regions are very similar, example similarities between spectra of Lufeing backbone head and Yua nmou backbone head; Lufeng limb bone and Wuding limb bone. There are relations between the same bone part spectra of different fossil dinosaurs. The characteristic does not relate to regions. Raman spectra of fossil dinosaurs cannot be used to distinguish fossil source, although the part of bone can be used as an indicator to narrow the range of possible geographical origins.

  5. Theoretical Raman spectra of carbonate minerals

    NASA Astrophysics Data System (ADS)

    Bobocioiu, E.; Caracas, R.

    2011-12-01

    The Raman spectra of the majority of MeCO3 minerals, with Me=alkali elements, calc-alkali elements or combinations thereof, are determined using density functional perturbation theory in the ABINIT implementation. We consider more than a dozen different minerals, most of them with rhombohedral, i.e. calcite-like, or orthorhombic, i.e. aragonite-like, structures [1]. We start with the experimental structure and perform two distinct structural relaxations: one at experimental density, i.e. experimental volume, and one at theoretical 0GPa pressure. During these structural relaxations we minimize the energy, the residual forces on the atoms and the non-hydrostatic stresses on the unit cell. Consequently in the end we obtain to distinct sets of data. We find that the relative intensities of the major Raman peaks are in good agreement with respect to experiment. The positions of the peaks are consistently shifted relative to the experiment. As a general rule, the best agreement between theory and experiment is obtained for the calcualtions performed at experimental density. We find that all spectra are dominated, as expected, by the stretching modes of the planar CO3 groups. Their theoretical frequency varies from as low as 1066 in paralstonite [BaCa(CO3)2] up to high as 1113 cm-1 in eitelite [Na2Mg(CO3)2]. The low-frequency modes are dominated by the heavy cations. Their degeneracy is directly determined by the symmetry of the structure. We performed a detailed comparative study to be able to identify identification trends. Finally we discuss C and O isotope fractionation patterns. We compute log(β) functions based on the vibrational information contained in the Brillouin zone center. Though not complete, this information is already enough to give us a reasonable estimation of the partitioning. Reference: Caracas, R., Bobocioiu, E. (2011) The WURM project - a freely available web-based repository of computed physical data for minerals, American Mineralogist, vol. 96

  6. Raman intensity and spectra predictions for cylindrical viruses

    NASA Astrophysics Data System (ADS)

    Dykeman, Eric C.; Sankey, Otto F.; Tsen, Kong-Thon

    2007-07-01

    A theoretical framework for predicting low frequency Raman vibrational spectra of viral capsids is presented and applied to the M13 bacteriophage. The method uses a continuum elastic theory for the vibrational modes and a bond-charge polarizability model of an amorphous material to roughly predict the Raman intensities. Comparison is made to experimental results for the M13 bacteriophage virus.

  7. Cancer detection based on Raman spectra super-paramagnetic clustering

    NASA Astrophysics Data System (ADS)

    González-Solís, José Luis; Guizar-Ruiz, Juan Ignacio; Martínez-Espinosa, Juan Carlos; Martínez-Zerega, Brenda Esmeralda; Juárez-López, Héctor Alfonso; Vargas-Rodríguez, Héctor; Gallegos-Infante, Luis Armando; González-Silva, Ricardo Armando; Espinoza-Padilla, Pedro Basilio; Palomares-Anda, Pascual

    2016-08-01

    The clustering of Raman spectra of serum sample is analyzed using the super-paramagnetic clustering technique based in the Potts spin model. We investigated the clustering of biochemical networks by using Raman data that define edge lengths in the network, and where the interactions are functions of the Raman spectra's individual band intensities. For this study, we used two groups of 58 and 102 control Raman spectra and the intensities of 160, 150 and 42 Raman spectra of serum samples from breast and cervical cancer and leukemia patients, respectively. The spectra were collected from patients from different hospitals from Mexico. By using super-paramagnetic clustering technique, we identified the most natural and compact clusters allowing us to discriminate the control and cancer patients. A special interest was the leukemia case where its nearly hierarchical observed structure allowed the identification of the patients's leukemia type. The goal of this study is to apply a model of statistical physics, as the super-paramagnetic, to find these natural clusters that allow us to design a cancer detection method. To the best of our knowledge, this is the first report of preliminary results evaluating the usefulness of super-paramagnetic clustering in the discipline of spectroscopy where it is used for classification of spectra.

  8. Analytic calculations of anharmonic infrared and Raman vibrational spectra

    PubMed Central

    Louant, Orian; Ruud, Kenneth

    2016-01-01

    Using a recently developed recursive scheme for the calculation of high-order geometric derivatives of frequency-dependent molecular properties [Ringholm et al., J. Comp. Chem., 2014, 35, 622], we present the first analytic calculations of anharmonic infrared (IR) and Raman spectra including anharmonicity both in the vibrational frequencies and in the IR and Raman intensities. In the case of anharmonic corrections to the Raman intensities, this involves the calculation of fifth-order energy derivatives—that is, the third-order geometric derivatives of the frequency-dependent polarizability. The approach is applicable to both Hartree–Fock and Kohn–Sham density functional theory. Using generalized vibrational perturbation theory to second order, we have calculated the anharmonic infrared and Raman spectra of the non- and partially deuterated isotopomers of nitromethane, where the inclusion of anharmonic effects introduces combination and overtone bands that are observed in the experimental spectra. For the major features of the spectra, the inclusion of anharmonicities in the calculation of the vibrational frequencies is more important than anharmonic effects in the calculated infrared and Raman intensities. Using methanimine as a trial system, we demonstrate that the analytic approach avoids errors in the calculated spectra that may arise if numerical differentiation schemes are used. PMID:26784673

  9. [Research on Raman spectra of benzoic acid during decarboxylic process].

    PubMed

    Wang, Shi-Xia; Zheng, Hai-Fei

    2009-12-01

    The present research studied benzoic acid change in water and its Raman spectra in temperature rising period using hydrothermal diamond anvil cell and Raman spectrum technique. The hydrothermal diamond anvil cell is the most useful instrument to observe sample in-situation under high temperature and high pressure. The authors can get effective results from this instrument and pursue further research. The method of Raman spectra is the most useful measure tool and it can detect the material according to the spectrum. The result showed that there was no change in characteristic vibrational Raman peak of benzoic acid in the lower temperature period and there was no reaction between benzoic acid and water. In the process of temperature rising period, the characteristic vibrational Raman peak of benzoic acid became weaker. During the process, benzoic acid began to dissolve in water, but no chemical reaction happened. The reason for weaker Raman peak of benzoic acid is the dissolution. The characteristic vibrational Raman peak of carboxyl disappeared at 150 degrees C, which showed that decarboxylic reaction occurred on benzoic acid. But the main Raman peak of benzoic acid existed which showed that no chemical reaction existed. And then benzoic acid disappeared when temperature ascended to 170 degrees C. When the temperature of system dropped to room temperature, a kind of crystal appeared. The characteristic vibrational Raman peak of this kind of crystal showed that the crystal contained benzene ring, showing that dutrex appeared. At the same time the authors did not find the characteristic vibrational Raman peak of carboxyl, so the crystal was not benzoic acid. The whole research showed that: dutrex can disappear and be regained in the process of dissolution and recrystallization, but carboxyl cannot.

  10. [Research on Raman spectra of benzoic acid during decarboxylic process].

    PubMed

    Wang, Shi-Xia; Zheng, Hai-Fei

    2009-12-01

    The present research studied benzoic acid change in water and its Raman spectra in temperature rising period using hydrothermal diamond anvil cell and Raman spectrum technique. The hydrothermal diamond anvil cell is the most useful instrument to observe sample in-situation under high temperature and high pressure. The authors can get effective results from this instrument and pursue further research. The method of Raman spectra is the most useful measure tool and it can detect the material according to the spectrum. The result showed that there was no change in characteristic vibrational Raman peak of benzoic acid in the lower temperature period and there was no reaction between benzoic acid and water. In the process of temperature rising period, the characteristic vibrational Raman peak of benzoic acid became weaker. During the process, benzoic acid began to dissolve in water, but no chemical reaction happened. The reason for weaker Raman peak of benzoic acid is the dissolution. The characteristic vibrational Raman peak of carboxyl disappeared at 150 degrees C, which showed that decarboxylic reaction occurred on benzoic acid. But the main Raman peak of benzoic acid existed which showed that no chemical reaction existed. And then benzoic acid disappeared when temperature ascended to 170 degrees C. When the temperature of system dropped to room temperature, a kind of crystal appeared. The characteristic vibrational Raman peak of this kind of crystal showed that the crystal contained benzene ring, showing that dutrex appeared. At the same time the authors did not find the characteristic vibrational Raman peak of carboxyl, so the crystal was not benzoic acid. The whole research showed that: dutrex can disappear and be regained in the process of dissolution and recrystallization, but carboxyl cannot. PMID:20210158

  11. Raman spectra of semiconductor nanoparticles: Disorder-activated phonons

    NASA Astrophysics Data System (ADS)

    Ingale, Alka; Rustagi, K. C.

    1998-09-01

    We present Raman spectra of four semiconductor doped glasses and a single crystal of CdS0.55Se0.45 in the range 30-800 cm-1 in the backscattering geometry. This includes the first-order Raman scattering from the disorder-activated zone-edge phonons and the LO phonons. TO phonon modes are not observed, as in bulk CdS, for the excitation well above the lowest gap. We show that the asymmetric line profile of the LO phonon structure can be understood as a composite of two phonon modes: the zone center and the zone edge phonons. Disorder-activated modes in the (30-130)-cm-1 range and the higher-order Raman spectra are also observed and found to be consistent with this assignment.

  12. Raman spectra of amino acids and their aqueous solutions

    NASA Astrophysics Data System (ADS)

    Zhu, Guangyong; Zhu, Xian; Fan, Qi; Wan, Xueliang

    2011-03-01

    Amino acids are the basic "building blocks" that combine to form proteins and play an important physiological role in all life-forms. Amino acids can be used as models for the examination of the importance of intermolecular bonding in life processes. Raman spectra serve to obtain information regarding molecular conformation, giving valuable insights into the topology of more complex molecules (peptides and proteins). In this paper, amino acids and their aqueous solution have been studied by Raman spectroscopy. Comparisons of certain values for these frequencies in amino acids and their aqueous solutions are given. Spectra of solids when compared to those of the solute in solution are invariably much more complex and almost always sharper. We present a collection of Raman spectra of 18 kinds of amino acids ( L-alanine, L-arginine, L-aspartic acid, cystine, L-glutamic acid, L-glycine, L-histidine, L-isoluecine, L-leucine, L-lysine, L-phenylalanine, L-methionone, L-proline, L-serine, L-threonine, L-tryptophan, L-tyrosine, L-valine) and their aqueous solutions that can serve as references for the interpretation of Raman spectra of proteins and biological materials.

  13. IR, Raman and SERS spectra of propantheline bromide.

    PubMed

    Baraldi, C; Freguglia, G; Tinti, A; Sparta, M; Alexandrova, A N; Gamberini, M C

    2013-02-15

    The two known propantheline bromide polymorphs (form I and form II) were studied and characterized by a multianalytical approach. In the present work, the identification of propantheline bromide polymorphic forms through vibrational IR spectroscopies are presented and for the first time Raman microscopy and hot stage Raman microscopy (HSRM) studies are reported. Finally, quantum mechanical calculations were performed. For assisting the assignment of the experimental picks, the two IR spectra of the most and least stable representatives of a set of 56 conformers are calculated and studied. DSC thermograms data, are also reported. The surface enhanced Raman scattering (SERS) spectrum was also recorded in a silver colloid; it could be inferred that propantheline bromide is adsorbed on silver colloid through the oxygen atom with the molecular plane perpendicular to the metal surface.

  14. Raman Spectra Of Double-Walled Carbon Nanotubes

    NASA Astrophysics Data System (ADS)

    Vuković, T.; Dmitrović, S.; Dobardžić, E.

    2007-04-01

    Using nonresonant bond-polarization theory, Raman spectra of periodic double-walled carbon nanotubes (DWCNTs) are calculated. Due to the lower symmetry of DWCNT, the number of Raman active modes is much larger compared to those of its layers. Complete frequency range of the tubes spectra has been analyzed for large number of tubes. We found that only modes whose frequencies are below 800 cm-1 have noticeable up shifts compared to those of isolated layers. Special attention is given to radial breathing modes (RBMs) and G-band region since these modes are used for the identification of singe-walled carbon nanotubes. In case of breathing like modes (BLMs), frequency of the out of phase mode is found to be chirality dependent, while the in phase one remains only diameter dependent as in the case of individual layers.

  15. Raman spectra and optical coherent tomography images of skin

    NASA Astrophysics Data System (ADS)

    Villanueva-Luna, A. E.; Castro-Ramos, J.; Vazquez-Montiel, S.; Flores-Gil, A.; Delgado-Atencio, J. A.; Vazquez-Villa, A.

    2011-03-01

    The optical coherence tomography images are useful to see the internal profile and the structure of material samples. In this work, OCT images were recorded in 10 volunteers with different skin tone which were related to Raman spectra. The areas where we obtained OCT images and Raman spectra were a) index finger nail, b) between index finger and middle finger, c) middle finger tip, d) half of middle finger, e) the thumb finger tip and f) between index finger and thumb, areas measured were for the purpose of finding extracellular fluids with contain triglycerides, cholesterol and glucose that are reported in the literature. The excitation wavelength used for this work was 785 nm, a spectrometer of 6 cm-1 resolution. The spectral region used ranges from 300 to 1800 cm-1. We use an OCT with 930 nm of Central Wavelength, 1.6 mm of Image Depth, 6 mm of image width and 6.2 μm of axial resolution.

  16. Processing Raman Spectra of High-Pressure Hydrogen Flames

    NASA Technical Reports Server (NTRS)

    Nguyen, Quang-Viet; Kojima, Jun

    2006-01-01

    The Raman Code automates the analysis of laser-Raman-spectroscopy data for diagnosis of combustion at high pressure. On the basis of the theory of molecular spectroscopy, the software calculates the rovibrational and pure rotational Raman spectra of H2, O2, N2, and H2O in hydrogen/air flames at given temperatures and pressures. Given a set of Raman spectral data from measurements on a given flame and results from the aforementioned calculations, the software calculates the thermodynamic temperature and number densities of the aforementioned species. The software accounts for collisional spectral-line-broadening effects at pressures up to 60 bar (6 MPa). The line-broadening effects increase with pressure and thereby complicate the analysis. The software also corrects for spectral interference ("cross-talk") among the various chemical species. In the absence of such correction, the cross-talk is a significant source of error in temperatures and number densities. This is the first known comprehensive computer code that, when used in conjunction with a spectral calibration database, can process Raman-scattering spectral data from high-pressure hydrogen/air flames to obtain temperatures accurate to within 10 K and chemical-species number densities accurate to within 2 percent.

  17. Raman spectra of solid benzene under high pressure

    NASA Technical Reports Server (NTRS)

    Thiery, M.-M.; Kobashi, K.; Spain, I. L.

    1985-01-01

    Raman spectra of solid benzene have been measured at room temperature up to about 140 kbar, using the diamond anvil cell. Effort has been focused upon the lattice vibration spectra at pressures above that of phase II. It is found that a change in slopes occurs in the frequency-pressure curves at about 40 kbar. Furthermore, a new band appears above 90 kbar. These features probably correspond respectively to the II-III phase transition, which has been reported previously, and a III-IV phase transition, reported here for the first time.

  18. Resonant Raman scattering background in XRF spectra of binary samples

    NASA Astrophysics Data System (ADS)

    Sánchez, Héctor Jorge; Leani, Juan José

    2015-02-01

    In x-ray fluorescence analysis, spectra present singular characteristics produced by the different scattering processes. When atoms are irradiated with incident energy lower and close to an absorption edge, scattering peaks appear due to an inelastic process known as resonant Raman scattering. In this work we present theoretical calculations of the resonant Raman scattering contributions to the background of x-ray fluorescence spectra of binary samples of current technological or biological interest. On one hand, a binary alloy of Fe with traces of Mn (Mn: 0.01%, Fe: 99.99%) was studied because of its importance in the stainless steels industries. On the second hand a pure sample of Ti with V traces (Ti: 99%, V: 1%) was analyzed due to the current relevance in medical applications. In order to perform the calculations the Shiraiwa and Fujino's model was used to calculate characteristic intensities and scattering interactions. This model makes certain assumptions and approximations to achieve the calculations, especially in the case of the geometrical conditions and the incident and take-off beams. For the binary sample studied in this work and the considered experimental conditions, the calculations show that the resonant Raman scattering background is significant under the fluorescent peak, affects the symmetry of the peaks and, depending on the concentrations, overcomes the enhancements contributions (secondary fluorescence).

  19. Application of wavelet packet transform to compressing Raman spectra data

    NASA Astrophysics Data System (ADS)

    Chen, Chen; Peng, Fei; Cheng, Qinghua; Xu, Dahai

    2008-12-01

    Abstract The Wavelet transform has been established with the Fourier transform as a data-processing method in analytical fields. The main fields of application are related to de-noising, compression, variable reduction, and signal suppression. Raman spectroscopy (RS) is characterized by the frequency excursion that can show the information of molecule. Every substance has its own feature Raman spectroscopy, which can analyze the structure, components, concentrations and some other properties of samples easily. RS is a powerful analytical tool for detection and identification. There are many databases of RS. But the data of Raman spectrum needs large space to storing and long time to searching. In this paper, Wavelet packet is chosen to compress Raman spectra data of some benzene series. The obtained results show that the energy retained is as high as 99.9% after compression, while the percentage for number of zeros is 87.50%. It was concluded that the Wavelet packet has significance in compressing the RS data.

  20. Complete analytic anharmonic hyper-Raman scattering spectra.

    PubMed

    Cornaton, Yann; Ringholm, Magnus; Ruud, Kenneth

    2016-08-10

    We present the first computational treatment of the complete second-order vibrational perturbation theory applied to hyper-Raman scattering spectroscopy. The required molecular properties are calculated in a fully analytic manner using a recently developed program [Ringholm, Jonsson and Ruud, J. Comp. Chem., 2014, 35, 622] that utilizes recursive routines. For some of the properties, these calculations are the first analytic calculations of their kind at their respective levels of theory. We apply this approach to the calculation of the hyper-Raman spectra of methane, ethane and ethylene and compare these to available experimental data. We show that the anharmonic corrections have a larger effect on the vibrational frequencies than on the spectral intensities, but that the inclusion of combination and overtone bands in the anharmonic treatment can improve the agreement with the experimental data, although the quality of available experimental data limits a detailed comparison. PMID:27459194

  1. An auto-adaptive background subtraction method for Raman spectra

    NASA Astrophysics Data System (ADS)

    Xie, Yi; Yang, Lidong; Sun, Xilong; Wu, Dewen; Chen, Qizhen; Zeng, Yongming; Liu, Guokun

    2016-05-01

    Background subtraction is a crucial step in the preprocessing of Raman spectrum. Usually, parameter manipulating of the background subtraction method is necessary for the efficient removal of the background, which makes the quality of the spectrum empirically dependent. In order to avoid artificial bias, we proposed an auto-adaptive background subtraction method without parameter adjustment. The main procedure is: (1) select the local minima of spectrum while preserving major peaks, (2) apply an interpolation scheme to estimate background, (3) and design an iteration scheme to improve the adaptability of background subtraction. Both simulated data and Raman spectra have been used to evaluate the proposed method. By comparing the backgrounds obtained from three widely applied methods: the polynomial, the Baek's and the airPLS, the auto-adaptive method meets the demand of practical applications in terms of efficiency and accuracy.

  2. Laser Raman spectra of calf thymus chromatin and its constituents.

    PubMed Central

    Savoie, R; Jutier, J J; Alex, S; Nadeau, P; Lewis, P N

    1985-01-01

    Extensive Raman measurements have been made on calf thymus chromatin, core chromatin, the (H3,H4)/DNA complex, and isolated DNA. The results indicate that the alpha-helical content of the nucleosomal histones gradually increases as they form the heterocomplexes that lead to the formation of the octameric nucleosome core. The secondary structure of the latter is not modified as it binds to DNA. The spectra indicate that the DNA essentially retains its B conformation in nucleosomes, although slight changes probably occur in the ribose-phosphate backbone. No specific interactions between the nucleosomal histones and DNA can be established from the spectra, but histone H1 possibly interacts selectively with the thymine bases. PMID:3986278

  3. Effect of isotopic disorder on Raman scattering spectra of crystals

    SciTech Connect

    Plekhanov, V.G.

    1995-03-01

    The first results of a quantitative study into the effect of isotopic disorder on optical phonon states, revealed as a broadening and shift of LO({Gamma}) phonon lines in second-order Raman scattering spectra of LiH{sub x}D{sub 1-x} crystals, are presented. The presence in the spectra of a local vibration at small values of x and the two-mode character of the LO{Gamma} phonons for x {le} 0.45, together with the substantial broadening of the LO({Gamma}) phonon scattering lines, suggest the presence of a considerable isotopic disorder effect, which implies unambiguously strong LO({Gamma}) phonon scattering. Additional supporting evidence comes from the disagreement of the above experimental finding with the coherent-potential-model predictions for the case of weak phonon scattering. 21 refs., 3 figs.

  4. [IR and Raman spectra studies of Rotundine based on DFT].

    PubMed

    Li, Jun-Ping; Zhou, Guang-Ming; Zhang, Li-Jun; Cheng, Hong-Mei; Qin, Hong-Ying

    2014-11-01

    Infrared spectroscopy (IR), the normal Raman spectroscopy (NRS) and the surface enhanced Raman spectroscopy (SERS) in new Ag/Cu nanomaterial of Rotundine were studied in the present paper. The IR and the NRS of Rotundine were calculated by the density functional theory (DFT) using B3LYP/6-311+G(d, p), then the spectral intensity graph of Rotundine were given. The vibrational peaks were assigned comprehensively by the visualization software of Gauss view 5. 0. Rotundine has obvious infrared and Raman vibrational peak in the wave number range of 3 300-2500 and 1 800-600 cm(-1). SnCl2 and PVP was used as capping agent for the silver nanoparticles in SERS of Rotundine. Finally, by using the method of cyclic immersion well dispersed silver nanoparticles was obtained and achieved good enhancement effect. This molecule acquired strong selective enhancement vibration peak, In the wave number ranges of 1 500-1 400 and 1 000-700 cm(-1) the enhancement effect is most obvious. After analyzed, the methylene of this molecule is adsorbed on the silver nanoparticles surface and the angle between the benzene ring and the silver substrate is close to 90 degrees. The theoretically calculated spectra of Rotundine are consistent with the obtained experimental spectra. There are some differences may be due to the interaction forces between molecules and so on. The visualization software displayed the structure characteristics and molecular group vibration of this molecular visually and provided important basis for assigning the vibrational peaks. Rotundine is an important traditional Chinese medicine agent contained in many kinds of sedative drugs. The study provides a strong basis for the rapid, feature and trace identification of Rotundine and also supplies important reference for the biological role of central inhibition of analgesic drugs. PMID:25752044

  5. Polarized Raman spectra and intensities of aliphatic amino acids

    NASA Astrophysics Data System (ADS)

    Himmler, Hans J.; Eysel, Hans H.

    1989-01-01

    Raman spectra of aliphatic α- L-amino acids, glycine, alanine, and valine were re-investigated both in aqueous solution and deuterium oxide solution. The spectra were taken of the zwitterionic and of the completely deprotonated form of the amino acids. Spectra of leucine and isoleucine were studied in water at the isoelectric point. Spectra were recorded both with parallel and perpendicular polarization and the isotropic and anisotropic scattering components were isolated. The integrated intensities of CH stretch, CC stretch and carboxylate bend vibrations are discussed. Linear relations between the number of CC and CH bonds and the total scattered intensity in the appropriate spectral regions are observed. The sum over the carboxylate modes shows characteristic intensities for the first three members of the aliphatic amino acids. An increase of isotropic scattering of ϱ co 2 near 510 cm -1 with increasing chain length of the amino acid (or with increasing concentration) is interpreted as the result of micelle formation.

  6. Surface Raman spectra of a biased and buried ultrathin copper phthalocyanine layer

    SciTech Connect

    Hipps, K.W.; Dowdy, J.; Hoagland, J.J. )

    1991-01-01

    Raman spectra of Al-AlO{sub x}-CuPc (1 nm)-M devices, where M = Ag or Pb, are reported. The first Raman spectrum of a material buried in a working (biased) tunnel diode without Ag surface enhancement or substrate roughening is reported. Comparison of the Raman spectra resulting from biased devices with inelastic electron tunneling spectra proves that the anomalous features of the CuPc tunneling spectrum are not due to electrochemical changes inside the device.

  7. Multidimensional least-squares resolution of Raman spectra from intermediates in sensitized photochemical reactions

    SciTech Connect

    Fister, J.C. III; Harris, J.M.

    1995-12-01

    Transient resonance Raman spectroscopy is used to elicit reaction kinetics and intermediate spectra from sensitized photochemical reactions. Nonlinear least-squares analysis of Raman spectra of a triplet-state photosensitizer (benzophenone), acquired as a function of laser intensity and/or quencher concentration allow the Raman spectra of the sensitizer excited state and intermediate photoproducts to be resolved from the spectra of the ground state and solvent. In cases where physical models describing the system kinetics cannot be found, factor analysis techniques are used to obtain the intermediate spectra. Raman spectra of triplet state benzophenone and acetophenone, obtained as a function of laser excitation kinetics, and the Raman spectra of intermediates formed by energy transfer (triplet-state biacetyl) and hydrogen abstraction (benzhydrol radical) are discussed.

  8. [Correction Multiplicative Effects in Raman Spectra through Vector Angle Transformation].

    PubMed

    Yao, Zhi-xiang; Sun, Zeng-qiang; Su, Hui; Yuan, Hong-fu

    2016-02-01

    The linear relationship between the Raman spectral intensity and the analyte amount is frequently disrupted for a variety of complex reasons, which include these variations in laser source, focusing effect, sample scattering and refracting, so that causes poor quantitative results. As a whole, these disturbing effects can be divided to be additive and multiplicative, and the multiplicative effects are generally more difficult to be eliminated. A spectrum is a series data, also can be treated as a vector. In principle, unstable motions in spectrum intensity/amplitude corresponding to the module shifts for a vector, doesn't impact the vector direction which is the essence of the vector, so it is reasonable to rewrite the data form on module to on space angle for the same measurement. This thesis employed a data transformation to eliminate the multiplicative effects within spectra, i. e. , the spectrum signal on its amplitude has been transformed to be on the vector angles. The first step of the transformation is the selection of a stand vector which is near to the analyte and almost orthogonal to the background within the sample space; and the next step is to define a moving window, then to find out the angle between the sample vector (i. e. the transformed spectrum) and the stand vector within the window; while the window is moved along the spectrum data series, the transformation for vector angle (VA) series has been finished. The thesis has proved that an approximate linear quantitative relationship has been remained in the VA series. Multivariate calibration need full rank matrix which is combined by spectrum from variety samples, and variety VA series also can combine a full rank VA matrix, so the approximate linear VA matrix still perfectly meeting the demand for multivariate calibration. A mixed system consisted by methanol-ethanol-isopropanol has been employed to verify the eliminations to the multiplicative effects. These measuring values of the system are

  9. FTIR, Raman spectra and ab initio calculations of 2-mercaptobenzothiazole.

    PubMed

    Rai, Amareshwar K; Singh, Rachana; Singh, K N; Singh, V B

    2006-02-01

    FTIR and Raman spectra of a rubber vulcanization accelerator, 2-mercaptobenzothiazole (MBT), were recorded in the solid phase. The harmonic vibrational wavenumbers, for both the toutomeric forms of MBT, as well as for its dimeric complex, have been calculated, using ab initio RHF and density functional B3LYP methods invoking different basis sets upto RHF/6-31G** and B3LYP/6-31G** and the results were compared with the experimental values. Conformational studies have been also carried out regarding its toutomeric monomer forms and its dimer form. With all the basis sets the thione form of MBT (II) is predicted to be more stable than thiol form (I) and dimeric conformation (III) is predicted to be more stable with monomeric conformations (I) and (II). Vibrational assignments have been made, and it has been found that the calculated normal mode frequencies of dimeric conformation (III) are required for the analysis of IR and Raman bands of the MBT. The predicted shift in NH- stretching vibration towards the lower wave number side with the B3LYP/6-31G** calculations for the most stable dimer form (III), is in better agreement with experimental results. The intermolecular sulfur-nitrogen distance in N-H...S hydrogen bond was found to be 3.35 angstroms from these calculations, is also in agreement to the experimental value. PMID:16098806

  10. [Raman, FTIR spectra and normal mode analysis of acetanilide].

    PubMed

    Liang, Hui-Qin; Tao, Ya-Ping; Han, Li-Gang; Han, Yun-Xia; Mo, Yu-Jun

    2012-10-01

    The Raman and FTIR spectra of acetanilide (ACN) were measured experimentally in the regions of 3 500-50 and 3 500-600 cm(-1) respectively. The equilibrium geometry and vibration frequencies of ACN were calculated based on density functional theory (DFT) method (B3LYP/6-311G(d, p)). The results showed that the theoretical calculation of molecular structure parameters are in good agreement with previous report and better than the ones calculated based on 6-31G(d), and the calculated frequencies agree well with the experimental ones. Potential energy distribution of each frequency was worked out by normal mode analysis, and based on this, a detailed and accurate vibration frequency assignment of ACN was obtained. PMID:23285870

  11. Automated decomposition algorithm for Raman spectra based on a Voigt line profile model.

    PubMed

    Chen, Yunliang; Dai, Liankui

    2016-05-20

    Raman spectra measured by spectrometers usually suffer from band overlap and random noise. In this paper, an automated decomposition algorithm based on a Voigt line profile model for Raman spectra is proposed to solve this problem. To decompose a measured Raman spectrum, a Voigt line profile model is introduced to parameterize the measured spectrum, and a Gaussian function is used as the instrumental broadening function. Hence, the issue of spectral decomposition is transformed into a multiparameter optimization problem of the Voigt line profile model parameters. The algorithm can eliminate instrumental broadening, obtain a recovered Raman spectrum, resolve overlapping bands, and suppress random noise simultaneously. Moreover, the recovered spectrum can be decomposed to a group of Lorentzian functions. Experimental results on simulated Raman spectra show that the performance of this algorithm is much better than a commonly used blind deconvolution method. The algorithm has also been tested on the industrial Raman spectra of ortho-xylene and proved to be effective.

  12. Automated decomposition algorithm for Raman spectra based on a Voigt line profile model.

    PubMed

    Chen, Yunliang; Dai, Liankui

    2016-05-20

    Raman spectra measured by spectrometers usually suffer from band overlap and random noise. In this paper, an automated decomposition algorithm based on a Voigt line profile model for Raman spectra is proposed to solve this problem. To decompose a measured Raman spectrum, a Voigt line profile model is introduced to parameterize the measured spectrum, and a Gaussian function is used as the instrumental broadening function. Hence, the issue of spectral decomposition is transformed into a multiparameter optimization problem of the Voigt line profile model parameters. The algorithm can eliminate instrumental broadening, obtain a recovered Raman spectrum, resolve overlapping bands, and suppress random noise simultaneously. Moreover, the recovered spectrum can be decomposed to a group of Lorentzian functions. Experimental results on simulated Raman spectra show that the performance of this algorithm is much better than a commonly used blind deconvolution method. The algorithm has also been tested on the industrial Raman spectra of ortho-xylene and proved to be effective. PMID:27411136

  13. Polarized infrared and Raman spectra of diglycine nitrate single crystal

    NASA Astrophysics Data System (ADS)

    Baran, Jan; Barnes, Austin J.; Ratajczak, Henryk

    1995-02-01

    Polarized infrared (4000- ca. 350 cm -1) and Raman (4000-10 cm -1) spectra of diglycine nitrate (DGN) single crystal were measured at room temperature; polarized infrared spectra were also measured at several low temperatures (230, 180, 15 K). In the paraelectric phase, the glycine ion pairs were found to be joined by a symmetrical ( Ci) O···H···O hydrogen bond and the nitrate ions exhibited high symmetry (most likely D36) as a result of effectively free rotation. The ferroelectric phase transition occurs because of inhibition of the rotation of the nitrate ions, with consequent lowering of their symmetry to C1, as a result of increased N-H···O hydrogen bonding interaction with the +NH 3 groups of the neighbouring glycine ions. The symmetry of the glycine ion pair also falls to C1 in the ferroelectric phase, but the proton motion in the O···H···O bond does not play a significant role in the phase transition.

  14. Resonance Raman spectra of. cap alpha. -copper phthalocyanine

    SciTech Connect

    Bovill, A.J.; McConnell, A.A.; Nimmo, J.A.; Smith, W.E.

    1986-02-13

    Raman spectra of ..cap alpha..-copper phthalocyanine (..cap alpha..-CuPc) were recorded at room temperature and at 10 K with excitation wavelengths between 457 and 714 nm. Resonance enhancement was greatest for modes for which the largest displacements were on either the inner five-membered ring of the isoindole groups or the inner macrocycle and consequently assignment of the bands to modes of the entire molecule was possible by comparison with nickel octaethylporphyrin. Four out of five bands resonant in the Q band region and preresonant near the B band absorption region are totally symmetric modes. B band preresonance occurs more strongly with high-frequency modes. At low temperatures, multimode interactions are reduced and profiles were obtained which can be compared with solution profiles of porphyrins. Both Q/sub x/ and Q/sub y/ 0-0 scattering can be identified and a helper mode is evident. A term enhancement predominates, with B/sub 1g/ and B/sub 2g/ modes enhanced because of a Jahn-Teller distortion of the excited state. The resonance studies, together with electronic absorption spectra and published theoretical studies, confirm that the Q band in ..cap alpha..-CuPc is largely due to an allowed ..pi..-..pi..* transition associated mainly with the macrocycle and inner five-membered rings of the isoindole groups. 25 references, 5 figures, 2 tables.

  15. [Reserach on Raman spectra of organic ingredients on colored pearls].

    PubMed

    Hu, Yang; Fan, Lu-Wei; Huang, Yi-Lan

    2014-01-01

    Based on the visible spectra and Raman spectra test of a variety of colored pearls samples to study the relationship between the organic component and the pearl's color was studied. The study results show that both the freshwater and seawater pearls exhibit strong characteristic peaks in 1121-1132 and 1506-1524 cm(-1) range, which is respectively attributed to the C-C and C=C stretching vibration; the peak intensity in 1117-1132, 1502-1524 and 2000-3500 cm(-1) range increases as the color deepens, which is closely related to the pearl's color; The peak in the 1475-1575 cm(-1) range is divided into 8-10 secondary peaks of purple freshwater pearl and deep orange seawater pearl. The number of C=C double bonds is N=9 approximately 27 and N=7 approximately 27 respectively after calculation. Polyene compound of different varieties and content could be the reason for the pearls' color.

  16. Excited-state Raman spectroscopy with and without actinic excitation: S{sub 1} Raman spectra of trans-azobenzene

    SciTech Connect

    Dobryakov, A. L.; Quick, M.; Ioffe, I. N.; Granovsky, A. A.; Ernsting, N. P.; Kovalenko, S. A.

    2014-05-14

    We show that femtosecond stimulated Raman spectroscopy can record excited-state spectra in the absence of actinic excitation, if the Raman pump is in resonance with an electronic transition. The approach is illustrated by recording S{sub 1} and S{sub 0} spectra of trans-azobenzene in n-hexane. The S{sub 1} spectra were also measured conventionally, upon nπ* (S{sub 0} → S{sub 1}) actinic excitation. The results are discussed and compared to earlier reports.

  17. The prediction of Raman spectra of platinum(II) anticancer drugs by density functional theory

    NASA Astrophysics Data System (ADS)

    Michalska, Danuta; Wysokiński, Rafał

    2005-02-01

    We present the method of theoretical calculations of the Raman intensities and the simulated Raman spectra of platinum(II) complexes. Theoretical Raman spectra of the anticancer agents: cisplatin ( 1), carboplatin ( 2), cis-[Pt(orotato)(NH 3) 2] ( 3), cis-[PtCl 2(NH 3)(2-picoline)], ZD0473 ( 4), and the two transient species of 4 (the hydrolysis products) were calculated by density functional mPW1PW method with several basis sets. For comparison, the experimental Raman spectra of compounds 1- 3 were measured. The clear-cut assignment of the Pt-ligand vibrations in the Raman spectra of the investigated compounds has been made on the basis of the calculated potential energy distribution.

  18. Consistency analysis of plastic samples based on similarity calculation from limited range of the Raman spectra

    NASA Astrophysics Data System (ADS)

    Lai, B. W.; Wu, Z. X.; Dong, X. P.; Lu, D.; Tao, S. C.

    2016-07-01

    We proposed a novel method to calculate the similarity between samples with only small differences at unknown and specific positions in their Raman spectra, using a moving interval window scanning across the whole Raman spectra. Two ABS plastic samples, one with and the other without flame retardant, were tested in the experiment. Unlike the traditional method in which the similarity is calculated based on the whole spectrum, we do the calculation by using a window to cut out a certain segment from Raman spectra, each at a time as the window moves across the entire spectrum range. By our method, a curve of similarity versus wave number is obtained. And the curve shows a large change where the partial spectra of the two samples is different. Thus, the new similarity calculation method identifies samples with tiny difference in their Raman spectra better.

  19. Raman spectra of high- κ dielectric layers investigated with micro-Raman spectroscopy comparison with silicon dioxide.

    PubMed

    Borowicz, P; Taube, A; Rzodkiewicz, W; Latek, M; Gierałtowska, S

    2013-01-01

    Three samples with dielectric layers from high- κ dielectrics, hafnium oxide, gadolinium-silicon oxide, and lanthanum-lutetium oxide on silicon substrate were studied by Raman spectroscopy. The results obtained for high- κ dielectrics were compared with spectra recorded for silicon dioxide. Raman spectra suggest the similarity of gadolinium-silicon oxide and lanthanum-lutetium oxide to the bulk nondensified silicon dioxide. The temperature treatment of hafnium oxide shows the evolution of the structure of this material. Raman spectra recorded for as-deposited hafnium oxide are similar to the results obtained for silicon dioxide layer. After thermal treatment especially at higher temperatures (600°C and above), the structure of hafnium oxide becomes similar to the bulk non-densified silicon dioxide.

  20. Effect of Grain Size and Grain Orientation on the Raman Spectra of Minerals

    NASA Technical Reports Server (NTRS)

    Sharma, S. K.; Chio, C. H.; Deb, P.; Lucey, P. G.; Domergue-Schmidt, N.; Horton, K. A.

    2000-01-01

    We have examined effects of grain size and grain orientation on the Raman spectra of quartz and olivine to evaluate the effect of these parameters on in situ and remote analysis of planetary surface rocks.

  1. Raman scattering spectra of insect virus PrGV-VP and their surface-enhanced Raman scattering spectra adsorbed on silver

    NASA Astrophysics Data System (ADS)

    Bao, PeiDi; Huang, TianQuan; Liu, XinMing; Wu, Tieqiao

    1998-04-01

    The ordinary Raman scattering (ORS) spectra of virion protein of Granulosis Virus of Cabbage Butterfly Preris rapae (PrGV-VP) and their surface-enhanced Raman scattering (SERS) spectra adsorbed on the surface of silver colloid particles have been found that the Raman signal in the SERS spectra was enhanced by a factor of about 8 X 102. In ORS spectra of PrGV-VP, it indicates that PrGV-VP has a predominantly random-coil secondary structures. All tyrosine residues are exposed. And the PrGV-VP has a gauche-gauche- gauche configuration of the C-C-S-S-C-C linkage. In SERS spectra of PrGV-VP, the intensities of bands related to COO group and NH2 group vibrations are relatively strong. We interpret that the PrGV-VP are adsorbed on the Ag surface through both the carboxylate groups and the amino groups. The efficient enhancement of amide I and amide II vibrations are impeded, because the peptide groups of PrGV-VP are screened by the side-chains amino acid residues. The Raman enhancement of PrGV-VP has a short-range mechanism. The chemisorption is a main mechanism on Ag hydrosols of PrGV- VP.

  2. Evaluation of Raman spectra of human brain tumor tissue using the learning vector quantization neural network

    NASA Astrophysics Data System (ADS)

    Liu, Tuo; Chen, Changshui; Shi, Xingzhe; Liu, Chengyong

    2016-05-01

    The Raman spectra of tissue of 20 brain tumor patients was recorded using a confocal microlaser Raman spectroscope with 785 nm excitation in vitro. A total of 133 spectra were investigated. Spectra peaks from normal white matter tissue and tumor tissue were analyzed. Algorithms, such as principal component analysis, linear discriminant analysis, and the support vector machine, are commonly used to analyze spectral data. However, in this study, we employed the learning vector quantization (LVQ) neural network, which is typically used for pattern recognition. By applying the proposed method, a normal diagnosis accuracy of 85.7% and a glioma diagnosis accuracy of 89.5% were achieved. The LVQ neural network is a recent approach to excavating Raman spectra information. Moreover, it is fast and convenient, does not require the spectra peak counterpart, and achieves a relatively high accuracy. It can be used in brain tumor prognostics and in helping to optimize the cutting margins of gliomas.

  3. Fluctuations of surface-enhanced Raman spectra of CO adsorbed on gold substrates

    NASA Astrophysics Data System (ADS)

    Kudelski, Andrzej; Pettinger, Bruno

    2004-01-01

    Surface-enhanced Raman scattering (SERS) of CO adsorbed on roughened gold surfaces has been studied using a Raman microscope with high spatial resolution. Sequentially recorded SERS spectra showed variations of Raman lines in their number, intensity, frequency, and halfwidth. Sometimes, in addition to the band for CO adsorbed at top sites, Raman peaks for bridge-bonded CO appear, showing large intensity fluctuations. Obviously, SERS fluctuations represent a more general property of SERS and point to local restructuring of substrates that changes temporarily the character of adsorption sites and/or their contribution to SERS. The single molecule 'blinking' effect is also discussed.

  4. Combined quantum mechanics (TDDFT) and classical electrodynamics (Mie theory) methods for calculating surface enhanced Raman and hyper-Raman spectra.

    PubMed

    Mullin, Jonathan; Valley, Nicholas; Blaber, Martin G; Schatz, George C

    2012-09-27

    Multiscale models that combine quantum mechanics and classical electrodynamics are presented, which allow for the evaluation of surface-enhanced Raman (SERS) and hyper-Raman scattering spectra (SEHRS) for both chemical (CHEM) and electrodynamic (EM) enhancement mechanisms. In these models, time-dependent density functional theory (TDDFT) for a system consisting of the adsorbed molecule and a metal cluster fragment of the metal particle is coupled to Mie theory for the metal particle, with the surface of the cluster being overlaid with the surface of the metal particle. In model A, the electromagnetic enhancement from plasmon-excitation of the metal particle is combined with the chemical enhancement associated with a static treatment of the molecule-metal structure to determine overall spectra. In model B, the frequency dependence of the Raman spectrum of the isolated molecule is combined with the enhancements determined in model A to refine the enhancement estimate. An equivalent theory at the level of model A is developed for hyper-Raman spectra calculations. Application to pyridine interacting with a 20 nm diameter silver sphere is presented, including comparisons with an earlier model (denoted G), which combines plasmon enhanced fields with gas-phase Raman (or hyper-Raman) spectra. The EM enhancement factor for spherical particles at 357 nm is found to be 10(4) and 10(6) for SERS and SEHRS, respectively. Including both chemical and electromagnetic mechanisms at the level of model A leads to enhancements on the order of 10(4) and 10(9) for SERS and SEHRS.

  5. Raman spectra and optical trapping of highly refractive and nontransparent particles

    NASA Astrophysics Data System (ADS)

    Xie, Changan; Li, Yong-qing

    2002-08-01

    We measured the Raman spectra of single optically trapped highly refractive and nontransparent microscopic particles suspended in a liquid using an inverted confocal laser-tweezers-Raman-spectroscopy system. A low-power diode-laser beam of TEM00 mode was used both for optical trapping and Raman excitation of refractive, absorptive, and reflective metal particles. To form a stable trap for a nontransparent particle, the beam focus was located near the top of the particle and the particle was pushed against a glass plate by the axial repulsive force. Raman spectra from single micron-sized crystals with high index of refraction including silicon, germanium, and KNbO3, and from absorptive particles of black and color paints were recorded. Surface-enhanced Raman scattering of R6G and phenylalanine molecules absorbed on the surface of a trapped cluster of silver particles was also demonstrated.

  6. [Laser Raman spectra study on Co-Mo/Al2O3 hydrodesulphurization catalysts].

    PubMed

    Yuan, Hui; Xu, Guang-Tong; Qiherima; Li, Hui-Feng; Lu, Li-Jun; Yang, Xing-Yuan; Tana

    2014-02-01

    Due to the implementation of more stringent specifications in sulfur content for gasoline , a deep understanding of the active phase of Co-Mo/Al2O3 catalysts is necessary to the development of hydrodesulphurization (HDS) catalysts. A series of Co-Mo/Al2O3 HDS catalysts with different metal loading were studied by laser Raman spectra. The existence form and the content of the active component of the catalyst were obtained by Raman spectra. The result shows that the percentage of characteristic Raman bands 940 cm(-1) correlates linearly with the HDS selectivity, which can be used as an experimental evidence for developing industrial selective HDS catalysts. Raman spectra of sulfided catalysts show that the bands of oxidic catalysts at 839 and 940 cm(-1) disappeared, and simultaneously, the bands of Mo-S at 372 and 408 cm(-1) emerged, which indicate that the oxidic sample is sulfided completely. PMID:24822416

  7. Analytic calculations of hyper-Raman spectra from density functional theory hyperpolarizability gradients

    SciTech Connect

    Ringholm, Magnus; Ruud, Kenneth; Bast, Radovan; Oggioni, Luca; Ekström, Ulf

    2014-10-07

    We present the first analytic calculations of the geometrical gradients of the first hyperpolarizability tensors at the density-functional theory (DFT) level. We use the analytically calculated hyperpolarizability gradients to explore the importance of electron correlation effects, as described by DFT, on hyper-Raman spectra. In particular, we calculate the hyper-Raman spectra of the all-trans and 11-cis isomers of retinal at the Hartree-Fock (HF) and density-functional levels of theory, also allowing us to explore the sensitivity of the hyper-Raman spectra on the geometrical characteristics of these structurally related molecules. We show that the HF results, using B3LYP-calculated vibrational frequencies and force fields, reproduce the experimental data for all-trans-retinal well, and that electron correlation effects are of minor importance for the hyper-Raman intensities.

  8. Method for automatically identifying spectra of different wood cell wall layers in Raman imaging data set.

    PubMed

    Zhang, Xun; Ji, Zhe; Zhou, Xia; Ma, Jian-Feng; Hu, Ya-Hong; Xu, Feng

    2015-01-20

    The technique of Raman spectroscopic imaging is finding ever-increasing applications in the field of wood science for its ability to provide spatial and spectral information about the sample. On the basis of the acquired Raman imaging data set, it is possible to determine the distribution of chemical components in various wood cell wall layers. However, the Raman imaging data set often contains thousands of spectra measured at hundreds or even thousands of individual frequencies, which results in difficulties accurately and quickly extracting all of the spectra within a specific morphological region of wood cell walls. To address this issue, the authors propose a new method to automatically identify Raman spectra of different cell wall layers on the basis of principal component analysis (PCA) and cluster analysis. A Raman imaging data set collected from a 55.5 μm × 47.5 μm cross-section of poplar tension wood was analyzed. Several thousand spectra were successfully classified into five groups in accordance with different morphological regions, namely, cell corner (CC), compound middle lamella (CML), secondary wall (SW), gelatinous layer (G-layer), and cell lumen. Their corresponding average spectra were also calculated. In addition, the relationship between different characteristic peaks in the obtained Raman spectra was estimated and it was found that the peak at 1331 cm(-1) is more related to lignin rather than cellulose. Not only can this novel method provide a convenient and accurate procedure for identifying the spectra of different cell wall layers in a Raman imaging data set, but it also can bring new insights into studying the morphology and topochemistry in wood cell walls.

  9. Interpretation of the resonance Raman spectra of linear tetrapyrroles based on DFT calculations

    NASA Astrophysics Data System (ADS)

    Kneip, Christa; Hildebrandt, Peter; Németh, Károly; Mark, Franz; Schaffner, Kurt

    1999-10-01

    Raman spectra of linear methine-bridged tetrapyrroles in different conformational and protonation states were calculated on the basis of scaled force fields obtained by density functional theory. Results are reported for protonated phycocyanobilin in the extended ZZZasa configuration, as it is found in C-phycocyanin of cyanobacteria. The calculated spectra are in good agreement with experimental spectra of the protein-bound chromophore in the α-subunit of C-phycocyanin and allow a plausible and consistent assignment of most of the observed resonance Raman bands in the region between 1000 and 1700 cm -1.

  10. Hydrogen bonding effects on infrared and Raman spectra of drug molecules

    NASA Astrophysics Data System (ADS)

    Bondesson, Laban; Mikkelsen, Kurt V.; Luo, Yi; Garberg, Per; Ågren, Hans

    2007-02-01

    Infrared and Raman spectra of three drug molecules, aspirin, caffeine and ibuprofen, in gas phase and in aqueous solution have been simulated using hybrid density functional theory. The long range solvent effect is modelled by the polarizable continuum model, while the short range hydrogen bonding effects are taken care of by the super-molecular approach with explicit inclusion of water molecules. The calculated spectra are found to compare well with available experimental results. The agreement obtained make grounds for proposing theoretical modeling as a tool for characterizing changes in the bonding environments of drug molecules in terms of particular variations in their IR and Raman spectra.

  11. How to make Raman-inactive helium visible in Raman spectra of tritium-helium gas mixtures

    SciTech Connect

    Schloesser, M.; Pakari, O.; Rupp, S.; Mirz, S.; Fischer, S.

    2015-03-15

    Raman spectroscopy, a powerful method for the quantitative compositional analysis of molecular gases, e.g. mixtures of hydrogen isotopologues, is not able to detect monoatomic species like helium. This deficit can be overcome by using radioluminescence emission from helium atoms induced by β-electrons from tritium decay. We present theoretical considerations and combined Raman/radioluminescence spectra. Furthermore, we discuss the linearity of the method together with validation measurements for determining the pressure dependence. Finally, we conclude how this technique can be used for samples of helium with traces of tritium, and vice versa. (authors)

  12. Raman spectra of normal and cancerous mouse mammary gland tissue using near infrared excitation energy

    NASA Astrophysics Data System (ADS)

    Naik, Vaman; Serhatkulu, G. K.; Dai, H.; Shukla, N.; Weber, R.; Thakur, J. S.; Freeman, D. C.; Pandya, A. K.; Auner, G. W.; Naik, R.; Miller, R. F.; Cao, A.; Klein, M. D.; Rabah, R.

    2006-03-01

    Raman spectra of normal mammary gland tissues, malignant mammary gland tumors, and lymph nodes have been recorded using fresh tissue from mice. Tumors were induced in mice by subcutaneously injecting 4T1 BALB/c mammary tumor (a highly malignant) cell line. The Raman spectra were collected using the same tissues that were examined by histopathology for determining the cancerous/normal state of the tissue. Differences in various peak intensities, peak shifts and peak ratios were analyzed to determine the Raman spectral features that differentiate mammary gland tumors from non-tumorous tissue. Tissues that were confirmed by pathology as cancerous (tumors) show several distinctive features in the Raman spectra compared to the spectra of the normal tissues. For example, the cancerous tissues show Raman peaks at 621, 642, 1004, 1032, 1175 and 1208 cm-1 that are assignable to amino acids containing aromatic side-chains such as phenylalanine, tryptophan and tyrosine. Further, the cancerous tissues show a greatly reduced level of phospholipids compared to the normal tissues. The Raman spectral regions that are sensitive to pathologic alteration in the tissue will be discussed.

  13. Raman spectra of Martian glass analogues: a tool to approximate their chemical composition

    NASA Astrophysics Data System (ADS)

    Di Genova, Danilo; Kolzenburg, Stephan; Vona, Alessandro; Chevrel, Magdalena O.; Hess, Kai-Uwe; Neuville, Daniel R.; Ertel-Ingrisch, Werner; Romano, Claudia; Dingwell, Donald B.

    2016-04-01

    We present a study on the systematic changes of Raman spectra of a series of glasses as a function of their chemistry. These glass compositions are considered as analogues for rock materials identified on Mars. We performed a diffusion experiment between an iron-rich basaltic and a rhyolitic melt under reducing conditions to produce a wide range of intermediate chemical compositions. We then systematically acquired Raman spectra of the intermediate composition glasses across the diffusion interface and correlate them with the corresponding chemical compositions derived by electron microprobe analysis. Using a linear mixing model for the spectral evolution as a function of chemistry, we fitted a Raman parameter to each spectrum to estimate the chemical composition of each glass. The Raman model was verified using external natural and synthetic samples. This study: 1) expands the Raman database of silicate glasses including alkali and iron-rich compositions as expected to be found on Mars; and 2) contributes to develop Raman spectroscopy as a quantitative tool in geological and planetary science to estimate the chemistry of glasses on a microscopic level. Moreover, as Raman spectrometers have been developed for two forthcoming Mars missions [ExoMars program (2016-2018) and Mars 2020], with the benefit of this calibration, Raman spectroscopy will allow rapid, in-situ and remotely controlled identification and investigation of silicate glasses on future extraterrestrial rover missions.

  14. Models and methods for quantitative analysis of surface-enhanced Raman spectra.

    PubMed

    Li, Shuo; Nyagilo, James O; Dave, Digant P; Gao, Jean

    2014-03-01

    The quantitative analysis of surface-enhanced Raman spectra using scattering nanoparticles has shown the potential and promising applications in in vivo molecular imaging. The diverse approaches have been used for quantitative analysis of Raman pectra information, which can be categorized as direct classical least squares models, full spectrum multivariate calibration models, selected multivariate calibration models, and latent variable regression (LVR) models. However, the working principle of these methods in the Raman spectra application remains poorly understood and a clear picture of the overall performance of each model is missing. Based on the characteristics of the Raman spectra, in this paper, we first provide the theoretical foundation of the aforementioned commonly used models and show why the LVR models are more suitable for quantitative analysis of the Raman spectra. Then, we demonstrate the fundamental connections and differences between different LVR methods, such as principal component regression, reduced-rank regression, partial least square regression (PLSR), canonical correlation regression, and robust canonical analysis, by comparing their objective functions and constraints.We further prove that PLSR is literally a blend of multivariate calibration and feature extraction model that relates concentrations of nanotags to spectrum intensity. These features (a.k.a. latent variables) satisfy two purposes: the best representation of the predictor matrix and correlation with the response matrix. These illustrations give a new understanding of the traditional PLSR and explain why PLSR exceeds other methods in quantitative analysis of the Raman spectra problem. In the end, all the methods are tested on the Raman spectra datasets with different evaluation criteria to evaluate their performance.

  15. Acquisition of Raman spectra of amino acids using portable instruments: Outdoor measurements and comparison

    NASA Astrophysics Data System (ADS)

    Culka, A.; Jehlička, J.; Edwards, H. G. M.

    2010-12-01

    Raman spectra of 13 amino acids: L-alanine, β-alanine, L-asparagine, L-aspartic acid, L-glutamic acid, L-glutamine, glycine, L-methionine, L-proline, L-serine, L-threonine, L-tryptophan and L-tyrosine were acquired outdoors using two portable Raman instruments from the Ahura and Delta Nu manufacturers, both with 785 nm laser excitation. Both instruments provide quality Raman spectra with nevertheless a variable dependence upon the prevailing experimental conditions. The data acquired in these experiments will inform the selection of suitable Raman spectrometers for the in-field detection of biomolecules of relevance to the search for life signatures spectroscopically in terrestrial extreme environments and in extraterrestrial exploration, especially of planetary surfaces and subsurfaces using robotic instrumentation.

  16. Fourier-transform Raman spectra of ivory III: identification of mammalian specimens

    NASA Astrophysics Data System (ADS)

    Edwards, H. G. M.; Farwell, D. W.; Holder, J. M.; Lawson, E. E.

    1997-11-01

    The FT-Raman spectra of six mammalian ivories, other than elephant and mammoth, are presented and spectral differences formulated into a protocol for the identification of animal species from the ivory samples. In this study, sperm whale, walrus, wart hog, narwhal, hippopotamus and domestic pig are considered. The results, which are obtained non-destructively from a variety of specimens, suggest that FT-Raman spectroscopy provides a potentially useful method for the identification of mammalian ivory.

  17. Pre-resonance Raman spectra of some simple gases. [sulfur oxides, hydrogen sulfide, and nitrogen oxides

    NASA Technical Reports Server (NTRS)

    Low, P. W.

    1974-01-01

    The pre-resonance Raman spectra of SO2, N2O, and H2S were investigated using the 4880 A, 4727 A, and 4579 A lines of the argon ion laser. Although these molecules have electronic absorption bands in the near ultraviolet, none exhibit any pre-resonance enhancement within our experimental error of + or - 10%. Possible explanations taking into account the current theories for resonance Raman are discussed.

  18. Adapting Raman Spectra from Laboratory Spectrometers to Portable Detection Libraries

    SciTech Connect

    Weatherall, James; Barber, Jeffrey B.; Brauer, Carolyn S.; Johnson, Timothy J.; Su, Yin-Fong; Ball, Christopher D.; Smith, Barry; Cox, Rick; Steinke, Robert; McDaniel, Patricia; Wasserzug, Louis

    2013-02-01

    Raman spectral data collected with high-resolution laboratory spectrometers are processed into a for- mat suitable for importing as a user library on a 1064nm DeltaNu rst generation, eld-deployable spectrometer prototype. The two laboratory systems used are a 1064nm Bruker spectrometer and a 785nm Kaiser spectrometer. The steps taken to compensate for device-dependent spectral resolution, wavenumber shifts between instruments, and wavenumber sensitivity variation are described.

  19. Effects of pathology dyes on Raman bone spectra

    PubMed Central

    Esmonde-White, Karen A.; Esmonde-White, Francis W. L.; Morris, Michael D.

    2013-01-01

    Abstract. We report an overlooked source of artifacts for clinical specimens, where unexpected and normally negligible contaminants can skew the interpretation of results. During an ongoing study of bone fragments from diabetic osteomyelitis, strong Raman signatures were found, which did not correspond with normal bone mineral or matrix. In a bone biopsy from the calcaneus of a patient affected by diabetic osteomyelitis, Raman microspectroscopic analysis revealed regions with both abnormal mineral and degraded collagen in addition to normal bone. Additional bands indicated a pathological material. Stenotrophomonas maltophilia was identified in the wound culture by independent microbiologic examination. We initially assigned the unusual bands to xanthomonadin, a bacterial pigment from S. maltophilia. However, the same bands were also found more than a year later on a second specimen that had been noticeably contaminated with pathology marking dye. Drop deposition/Raman spectroscopy of commonly used pathology dyes revealed that a blue tissue-marking dye was responsible for the unusual bands in both specimens, even in the first specimen where there was no visible evidence of contamination. PMID:23640079

  20. Effects of pathology dyes on Raman bone spectra

    NASA Astrophysics Data System (ADS)

    Esmonde-White, Karen A.; Esmonde-White, Francis W. L.; Morris, Michael D.; Roessler, Blake J.

    2013-05-01

    We report an overlooked source of artifacts for clinical specimens, where unexpected and normally negligible contaminants can skew the interpretation of results. During an ongoing study of bone fragments from diabetic osteomyelitis, strong Raman signatures were found, which did not correspond with normal bone mineral or matrix. In a bone biopsy from the calcaneus of a patient affected by diabetic osteomyelitis, Raman microspectroscopic analysis revealed regions with both abnormal mineral and degraded collagen in addition to normal bone. Additional bands indicated a pathological material. Stenotrophomonas maltophilia was identified in the wound culture by independent microbiologic examination. We initially assigned the unusual bands to xanthomonadin, a bacterial pigment from S. maltophilia. However, the same bands were also found more than a year later on a second specimen that had been noticeably contaminated with pathology marking dye. Drop deposition/Raman spectroscopy of commonly used pathology dyes revealed that a blue tissue-marking dye was responsible for the unusual bands in both specimens, even in the first specimen where there was no visible evidence of contamination.

  1. Effects of pathology dyes on Raman bone spectra.

    PubMed

    Esmonde-White, Karen A; Esmonde-White, Francis W L; Morris, Michael D; Roessler, Blake J

    2013-05-01

    We report an overlooked source of artifacts for clinical specimens, where unexpected and normally negligible contaminants can skew the interpretation of results. During an ongoing study of bone fragments from diabetic osteomyelitis, strong Raman signatures were found, which did not correspond with normal bone mineral or matrix. In a bone biopsy from the calcaneus of a patient affected by diabetic osteomyelitis, Raman microspectroscopic analysis revealed regions with both abnormal mineral and degraded collagen in addition to normal bone. Additional bands indicated a pathological material. Stenotrophomonas maltophilia was identified in the wound culture by independent microbiologic examination. We initially assigned the unusual bands to xanthomonadin, a bacterial pigment from S. maltophilia. However, the same bands were also found more than a year later on a second specimen that had been noticeably contaminated with pathology marking dye. Drop deposition/Raman spectroscopy of commonly used pathology dyes revealed that a blue tissue-marking dye was responsible for the unusual bands in both specimens, even in the first specimen where there was no visible evidence of contamination.

  2. Convergence in the evolution of nanodiamond Raman spectra with particle size: a theoretical investigation.

    PubMed

    Li, Wunfan; Irle, Stephan; Witek, Henryk A

    2010-08-24

    Structural characterization of nanodiamonds by vibrational spectroscopy requires knowledge of the factors determining the spectra. Raman spectroscopy is widely used to detect the diamond phase in nanodiamond powders and films, but several spectral features are still poorly understood. Here we present a theoretical study of the evolution of diamond hydrocarbon Raman spectra with increasing size, from the adamantane molecule to approximately 3 nm large tetrahedral and octahedral particles of T(d) symmetry, containing up to about 1000 carbon atoms. The self-consistent-charge density functional tight-binding method (SCC-DFTB) was used for the calculation of harmonic first-order Raman spectra. We demonstrate very good agreement with Raman spectra computed by standard density functional theory (DFT) for the smaller model systems. The evolution of the Raman patterns is smooth, and convergence to the bulk limit could clearly be observed in case of the acoustic vibrational modes (omega(A) = 0 cm(-1)). We found a simple relationship between nanodiamond size and vibrational frequency, which is analogous to the corresponding equation for the radial breathing mode of single-walled carbon nanotubes. The T(2) modes of octahedral diamond hydrocarbons coalesce faster to the bulk optical vibrational mode (in experiment, omega(O) = 1332 cm(-1)) than those of tetrahedral particles, consistent with the fact that the bulk/surface ratio is more favorable for octahedral particles. Our simulations unequivocally show that controversial Raman features around 500 and 1150 cm(-1) do not originate from the nanodiamond crystals, and that the nanocrystal shape plays an important role in the appearance of the Raman spectra even in the 3 nm domain.

  3. Parallel acquisition of Raman spectra from a 2D multifocal array using a modulated multifocal detection scheme

    NASA Astrophysics Data System (ADS)

    Kong, Lingbo; Chan, James W.

    2015-03-01

    A major limitation of spontaneous Raman scattering is its intrinsically weak signals, which makes Raman analysis or imaging of biological specimens slow and impractical for many applications. To address this, we report the development of a novel modulated multifocal detection scheme for simultaneous acquisition of full Raman spectra from a 2-D m × n multifocal array. A spatial light modulator (SLM), or a pair of galvo-mirrors, is used to generate m × n laser foci. Raman signals generated within each focus are projected simultaneously into a spectrometer and detected by a CCD camera. The system can resolve the Raman spectra with no crosstalk along the vertical pixels of the CCD camera, e.g., along the entrance slit of the spectrometer. However, there is significant overlap of the spectra in the horizontal pixel direction, e.g., along the dispersion direction. By modulating the excitation multifocal array (illumination modulation) or the emitted Raman signal array (detection modulation), the superimposed Raman spectra of different multifocal patterns are collected. The individual Raman spectrum from each focus is then retrieved from the superimposed spectra using a postacquisition data processing algorithm. This development leads to a significant improvement in the speed of acquiring Raman spectra. We discuss the application of this detection scheme for parallel analysis of individual cells with multifocus laser tweezers Raman spectroscopy (M-LTRS) and for rapid confocal hyperspectral Raman imaging.

  4. Comparison of FT Raman spectra of some 5-nitroquinoxalines and their electropolymers

    NASA Astrophysics Data System (ADS)

    Hrdlička, J.; Matějka, P.; Volf, R.; Volka, K.; Král, V.; Try, A. C.; Sessler, J. L.

    2001-05-01

    FT Raman spectroscopy was used to characterize a set of five newly synthesized 5-nitroquinoxaline derivatives 2,3-disubstituted with 2-pyrrolyl, 2-furyl, 2-thienyl, phenyl and 2-pyridyl groups. Afterwards the 5-nitroquinoxalines were electrochemically reduced to 5-aminoquinoxalines and electropolymerized as films on the Pt electrode coated with porous Au. Comparing the SERS spectra of polymers with the Raman spectra of monomers, a mechanism of polymerization has been suggested. Specific spectral and electrochemical properties of films based on pyrrole substituted 5-aminoquinoxaline were verified by electropolymerization of 2,3-dipyrrol-2'-yl-5-nitroquinoxaline without a reduction step.

  5. Quantum-mechanical analysis of the intensity distribution in spectra of resonant Raman scattering spectra of aqueous solutions of tyrosine

    NASA Astrophysics Data System (ADS)

    Burova, T. G.; Shcherbakov, R. S.

    2016-05-01

    Quantum-mechanical calculations of the intensity distribution in the resonant Raman scattering spectra of aqueous solutions of tyrosine excited by laser radiation with wavelengths of 244, 229, 218, 200, and 193 nm, as well as in the nonresonant Raman scattering spectrum excited at a wavelength of 488 nm, are performed. Satisfactory agreement is achieved between the calculation results and the experimental data. It is shown that the changes in the intensity distribution observed in the spectra with a change in the excitation wavelength from 244 to 193 nm correlate with the determined changes in the contribution made by excited electronic states into the scattering tensor components. It is noted that it is necessary to take into account the Herzberg-Teller effect and that the number of excited electronic states taken into account considerably affects the calculated relative intensities of lines. The possibility of existence of several tyrosine conformers in aqueous solution at room temperature is shown.

  6. [Raman spectra characteristics of alunite in the Zijinshan gold-copper deposit].

    PubMed

    Wang, Cui-Zhi; Xiong, Xin

    2014-02-01

    The Zijinshan gold-copper deposit is the first one of high sulfidation epithermal hydrothermal deposits. The gold bodies up, and the copper bodies down. The gold bodies mainly occur above the ground water table associated with strong silicification, and the copper bodies mainly occur below the ground water table associated with alunitization. The alunite of the Zijinshan gold-copper deposit has four types of occurrence status, that is the altered rock type, the intergrowth-with-Cu-sulphide type, the vein type and the powder type. Different types of the alunite are of different Raman spectra characteristics and fluorescence scattering background. Laser Raman spectra of inclusions in the alunite show that: (1) The characteristics of the Laser Raman spectra of the alunite are of characteristic spectral bands of alunite, just fluorescent scattering weaken gradually from the altered rock type, the intergrowth-with-Cu-sulphide type to the vein type; the alunite in the Powder type has different bands of the Laser Raman spectra relative to the former three types, the intensity of each band is weaker, and it's fluorescent scattering intensity is strongger. (2) The bands in 100-700 cm(-1) of the Laser Raman spectra can be used as "fingerprint" bands indicating the condition of the cation replacement in the molecular structure of alunite. The intensities at 161 and 234 peak change obviously in the bands of the alunite in the altered rock type, which indicating a wide replacement between K and Na; the intensities at 381 and 484 peak in the bands of the alunite in the intergrowth-with-Cu-sulphide type change significantly, indicating Al can be replaced with Cu, Ga, etc.; the larger and stable intensities of the alunite in the vein type in the bands at the peaks about 161, 234, 484, 508, etc. indicate that there are less chances with the replacement between K and Na, Al and Si; fluorescence scatorescent scattering is very strong and the intensity of each band is weaker in the

  7. Structure, IR and Raman spectra of phosphotrihydrazide studied by DFT

    NASA Astrophysics Data System (ADS)

    Furer, V. L.; Vandyukov, A. E.; Majoral, J. P.; Caminade, A. M.; Kovalenko, V. I.

    2016-09-01

    The FTIR and FT Raman measurements of the phosphotrihydrazide (S)P[N(Me)-NH2]3 have been performed. This compound is a zero generation dendrimer G0 with terminal amine groups. Structural optimization and normal mode analysis were obtained for G0 by the density functional theory (DFT). Optimized geometric bond length and angles obtained by DFT show good agreement with experiment. The amine terminal groups are characterized by the well-defined bands at 3321, 3238, 1614 cm- 1 in the experimental IR spectrum and by bands at 3327, 3241 cm- 1 in the Raman spectrum of G0. The experimental frequencies of asymmetric and symmetric NH2 stretching vibrations of amine group are lower than theoretical values due to intramolecular Nsbnd H ⋯ S hydrogen bond. This hydrogen bond is also responsible for higher experimental infrared intensity of these bands as compared with theoretical values. Relying on DFT calculations a complete vibrational assignment is proposed for the studied dendrimer.

  8. Structure, IR and Raman spectra of phosphotrihydrazide studied by DFT.

    PubMed

    Furer, V L; Vandyukov, A E; Majoral, J P; Caminade, A M; Kovalenko, V I

    2016-09-01

    The FTIR and FT Raman measurements of the phosphotrihydrazide (S)P[N(Me)-NH2]3 have been performed. This compound is a zero generation dendrimer G0 with terminal amine groups. Structural optimization and normal mode analysis were obtained for G0 by the density functional theory (DFT). Optimized geometric bond length and angles obtained by DFT show good agreement with experiment. The amine terminal groups are characterized by the well-defined bands at 3321, 3238, 1614cm(-1) in the experimental IR spectrum and by bands at 3327, 3241cm(-1) in the Raman spectrum of G0. The experimental frequencies of asymmetric and symmetric NH2 stretching vibrations of amine group are lower than theoretical values due to intramolecular NH⋯S hydrogen bond. This hydrogen bond is also responsible for higher experimental infrared intensity of these bands as compared with theoretical values. Relying on DFT calculations a complete vibrational assignment is proposed for the studied dendrimer. PMID:27179692

  9. Investigation of the spectra of luminescence and Raman scattering in water and chlorophyll "a" excited by femtosecond laser pulses

    NASA Astrophysics Data System (ADS)

    Biryukova, Yu. S.; Ilyin, A. A.; Golik, S. S.; Mayor, A. Y.

    2015-11-01

    The Raman spectra of femtosecond laser pulses in distilled and tap water, and luminescence spectra of aqueous solutions containing dissolved organic matter, chlorophyll "a" and biological objects excited by ultra-short laser pulses was investigated.

  10. Raman spectra of Martian glass analogues: A tool to approximate their chemical composition

    NASA Astrophysics Data System (ADS)

    Di Genova, Danilo; Kolzenburg, Stephan; Vona, Alessandro; Chevrel, Magdalena Oryaëlle; Hess, Kai-Uwe; Neuville, Daniel R.; Ertel-Ingrisch, Werner; Romano, Claudia; Dingwell, Donald B.

    2016-05-01

    Raman spectrometers will form a key component of the analytical suite of future planetary rovers intended to investigate geological processes on Mars. In order to expand the applicability of these spectrometers and use them as analytical tools for the investigation of silicate glasses, a database correlating Raman spectra to glass composition is crucial. Here we investigate the effect of the chemical composition of reduced silicate glasses on their Raman spectra. A range of compositions was generated in a diffusion experiment between two distinct, iron-rich end-members (a basalt and a peralkaline rhyolite), which are representative of the anticipated compositions of Martian rocks. Our results show that for silica-poor (depolymerized) compositions the band intensity increases dramatically in the regions between 550-780 cm-1 and 820-980 cm-1. On the other hand, Raman spectra regions between 250-550 cm-1 and 1000-1250 cm-1 are well developed in silica-rich (highly polymerized) systems. Further, spectral intensity increases at ~965 cm-1 related to the high iron content of these glasses (~7-17 wt % of FeOtot). Based on the acquired Raman spectra and an ideal mixing equation between the two end-members we present an empirical parameterization that enables the estimation of the chemical compositions of silicate glasses within this range. The model is validated using external samples for which chemical composition and Raman spectra were characterized independently. Applications of this model range from microanalysis of dry and hydrous silicate glasses (e.g., melt inclusions) to in situ field investigations and studies under extreme conditions such as extraterrestrial (i.e., Mars) and submarine volcanic environments.

  11. Broadband coherent Raman spectroscopy running at 24,000 spectra per second

    PubMed Central

    Hashimoto, Kazuki; Takahashi, Megumi; Ideguchi, Takuro; Goda, Keisuke

    2016-01-01

    We present a Fourier-transform coherent anti-Stokes Raman scattering (FT-CARS) spectroscopy technique that achieves broadband CARS measurements at an ultrahigh scan rate of more than 20,000 spectra/s – more than 20 times higher than that of previous broadband coherent Raman scattering spectroscopy techniques. This is made possible by an integration of a FT-CARS system and a rapid-scanning retro-reflective optical path length scanner. To demonstrate the technique’s strength, we use it to perform broadband CARS spectroscopy of the transient mixing dynamics of toluene and benzene in the fingerprint region (200–1500 cm−1) with spectral resolution of 10 cm−1 at a record high scan rate of 24,000 spectra/s. Our rapid-scanning FT-CARS technique holds great promise for studying chemical dynamics and wide-field label-free biomedical imaging. PMID:26875786

  12. Raman spectra of adsorbed layers on space shuttle and AOTV thermal protection system surface

    NASA Technical Reports Server (NTRS)

    Willey, Ronald J.

    1987-01-01

    Surfaces of interest to space vehicle heat shield design were struck by a 2 W argon ion laser line while subjected to supersonic arc jet flow conditions. Emission spectra were taken at 90 deg to the angle of laser incidence on the test object. Results showed possible weak Raman shifts which could not be directly tied to any particular parameter such as surface temperature or gas composition. The investigation must be considered exploratory in terms of findings. Many undesirable effects were found and corrected as the project progressed. For instance, initial spectra settings led to ghosts which were eliminated by closing the intermediate of filter slit of the Spex from 8 to 3 mm. Further, under certain conditions, plasma lines from the laser were observed. Several materials were also investigated at room temperature for Raman shifts. Results showed Raman shifts for RCC and TEOS coated materials. The HRSI materials showed only weak Raman shifts, however, substantial efforts were made in studying these materials. Baseline materials showed the technique to be sound. The original goal was to find a Raman shift for the High-temperature Reusable Surface Insulation (HRSI) Reaction Cured borosilicate Glass (RCG) coated material and tie the amplitude of this peak to Arc jet conditions. Weak Raman shifts may be present, however, time limitations prevented confirmation.

  13. How to pre-process Raman spectra for reliable and stable models?

    PubMed

    Bocklitz, Thomas; Walter, Angela; Hartmann, Katharina; Rösch, Petra; Popp, Jürgen

    2011-10-17

    Raman spectroscopy in combination with chemometrics is gaining more and more importance for answering biological questions. This results from the fact that Raman spectroscopy is non-invasive, marker-free and water is not corrupting Raman spectra significantly. However, Raman spectra contain despite Raman fingerprint information other contributions like fluorescence background, Gaussian noise, cosmic spikes and other effects dependent on experimental parameters, which have to be removed prior to the analysis, in order to ensure that the analysis is based on the Raman measurements and not on other effects. Here we present a comprehensive study of the influence of pre-processing procedures on statistical models. We will show that a large amount of possible and physically meaningful pre-processing procedures leads to bad results. Furthermore a method based on genetic algorithms (GAs) is introduced, which chooses the spectral pre-processing according to the carried out analysis task without trying all possible pre-processing approaches (grid-search). This was demonstrated for the two most common tasks, namely for a multivariate calibration model and for two classification models. However, the presented approach can be applied in general, if there is a computational measure, which can be optimized. The suggested GA procedure results in models, which have a higher precision and are more stable against corrupting effects.

  14. Raman spectra of the different phases in the CaSO4-H2O system.

    PubMed

    Prieto-Taboada, Nagore; Gómez-Laserna, Olivia; Martínez-Arkarazo, Irantzu; Olazabal, María Ángeles; Madariaga, Juan Manuel

    2014-10-21

    Although it is known that the CaSO4/H2O system is formed by at least five different phases, this fact is not correctly documented in Raman spectroscopy studies. The main problem detected in the literature was the incorrect definition of the anhydrite, which produced the assignation of different spectra for a single compound. In this sense, two different spectra were clearly identified from the bibliography, which showed different main Raman bands at 1017 or 1025 cm(-1), although anhydrite could be present even as three different polymorphous species with different structures. A better understanding of the whole system obtained from a review of the literature allowed new conclusions to be established. Thanks to that revision and the development of different thermodynamical experiments by Raman spectroscopy, the Raman spectra of each phase were successfully identified for the first time. In this way, the main Raman bands of gypsum, bassanite, anhydrite III, anhydrite II and anhydrite I were identified at 1008, 1015, 1025, 1017 and 1017 cm(-1), respectively. To conclude this work, the contradictions found in literature were critically summarized. PMID:25226433

  15. High pressure Raman spectra of monoglycine nitrate single crystal

    NASA Astrophysics Data System (ADS)

    Carvalho, J. O.; Moura, G. M.; Dos Santos, A. O.; Lima, R. J. C.; Freire, P. T. C.; Façanha Filho, P. F.

    2016-05-01

    Single crystal of monoglycine nitrate has been studied by Raman spectroscopy under high pressures up to 5.5 GPa. The results show changes in lattice modes in the pressure ranges of 1.1-1.6 GPa and 4.0-4.6 GPa. The first change occurs with appearance of bands related to the lattice modes as well as discontinuity in the slope of dΩ/dP of these modes. Moreover, bands associated with the skeleton of glycine suggest that the molecule undergoes conformational modifications. The appearance of a strong band at 55 cm- 1 point to a second phase transition associated with the lattice modes, while the internal modes remain unchanged. These anomalies are probably due to rearrangement of hydrogen bonds. Additionally, decompression to ambient pressure shows that the phase transitions are reversible. Finally, the results show that the nitrate anions play an important role on the stability of the monoglycine nitrate crystal.

  16. High pressure Raman spectra of monoglycine nitrate single crystal.

    PubMed

    Carvalho, J O; Moura, G M; Dos Santos, A O; Lima, R J C; Freire, P T C; Façanha Filho, P F

    2016-05-15

    Single crystal of monoglycine nitrate has been studied by Raman spectroscopy under high pressures up to 5.5 GPa. The results show changes in lattice modes in the pressure ranges of 1.1-1.6 GPa and 4.0-4.6 GPa. The first change occurs with appearance of bands related to the lattice modes as well as discontinuity in the slope of dΩ/dP of these modes. Moreover, bands associated with the skeleton of glycine suggest that the molecule undergoes conformational modifications. The appearance of a strong band at 55 cm(-1) point to a second phase transition associated with the lattice modes, while the internal modes remain unchanged. These anomalies are probably due to rearrangement of hydrogen bonds. Additionally, decompression to ambient pressure shows that the phase transitions are reversible. Finally, the results show that the nitrate anions play an important role on the stability of the monoglycine nitrate crystal. PMID:26967511

  17. Infrared and Raman spectra, DFT-calculations and spectral assignments of germacyclohexane

    SciTech Connect

    Aleksa, V. Ozerenskis, D.; Pucetaite, M.; Sablinskas, V.; Cotter, C.; Guirgis, G. A.

    2015-03-30

    Raman spectra of germacyclohexane in liquid and solid states were recorded and depolarization data obtained. Infrared absorption spectra of the vapor and liquid have been studied. The wavenumbers of the vibrational modes were derived in the harmonic and anharmonic approximation in B3LYP/ccpVTZ calculations. According to the calculations, germacyclohexane exists in the stable chair conformation, whereas a possible twist form should have more than 15 kJ·mol{sup -1} higher enthalpy of formation what makes this conformer experimentally not observable. The 27 A' and 21 A'' fundamentals were assigned on the basis of the calculations and infrared and Raman band intensities, contours of gas phase infrared spectral bands and Raman depolarization measurements. An average discrepancy of ca. 0.77 % was found between the observed and the calculated anharmonic wavenumbers for the 48 modes. Substitution of carbon atom with Ge atom in the cyclohexane ring is reasoning flattening of the ring.

  18. Coherent anti-Stokes Raman spectroscopy - Spectra of water vapor in flames

    NASA Technical Reports Server (NTRS)

    Hall, R. J.; Shirley, J. A.; Eckbreth, A. C.

    1979-01-01

    The results of experimental measurements of the coherent anti-Stokes Raman spectra of water vapor in flames are reported. A pulsed, frequency-doubled neodymium laser was used to supply the pump beam and to pump a dye laser to provide a broadband Stokes beam at 6600 A. Spectra were obtained in the postflame region of a premixed methane-air flame in the Raman frequency shift region of the symmetric stretch mode (3651.7 kaysers) at an approximate temperature of 1675 K. A theoretical calculation of the coherent anti-Stokes Raman spectrum of water vapor at this temperature was made, taking into account only isotropic Q-branch transitions, and using the energy level data of Floud et al. (1976). The theoretical prediction is shown essentially to reproduce all qualitative features of the experimental spectrum, and to exhibit a strong temperature dependence.

  19. Pressure dependence of Hexanitrostilbene Raman/ electronic absorption spectra to validate DFT EOS

    NASA Astrophysics Data System (ADS)

    Farrow, Darcie; Alam, Kathleen; Martin, Laura; Fan, Hongyou; Kay, Jeffrey; Wixom, Ryan

    2015-06-01

    Due to its thermal stability and low vapor pressure, Hexanitrostilbene (HNS) is often used in high-temperature or vacuum applications as a detonator explosive or in mild detonating fuse. Toward improving the accuracy of the equation of state used in hydrodynamic simulations of the performance of HNS, we have measured the Raman and electronic absorption spectra of this material under static pressure in a diamond anvil cell. Density functional theory calculations were used to simulate the pressure dependence of the Raman/Electronic spectra along the Hugoniot and 300K isotherm for comparison and to aid in interpreting the data. We will discuss changes in the electronic structure of HNS under pressure, validation of a DFT predicted equation of state (EOS), and using this data as a basis for understanding future pulsed Raman measurements on dynamically compressed HNS samples.

  20. [Temperature dependent Raman spectra and micro-structure study of cuspidine in solid and liquid phases].

    PubMed

    Niu, Yu-Jing; You, Jing-Lin; Wang, Yuan-Yuan; Wang, Zhi-Chao; Dai, Su-Juan; Xu, Jian-Lun; Zheng, Shao-Bo

    2010-12-01

    Cuspidine plays an important role in conventional metallurgical continuous casting mould flux. An UV laser source was used to record its ambient and high temperature Raman spectra (temperature range: 298-1 723 K) combined with a charge coupled device (CCD) detector. Both increasing and decreasing processes as well as characteristic spectra and shifts in wavenumber were observed. Micro-structure of cuspidine in liquid state is not unitary and different from that in solid state, suggesting multi clusters coexisting. Density functional theory (DFT) simulation method was applied to calculate its wavenumbers of Raman active vibrations by introducing the crystal spatial configuration model of cuspidine. Thus the experimental vibrational wavenumbers of the characteristic peaks could be assigned. This will help study physical and chemical behavior of cuspidine in continuous casting mould flux and provide an unique in-situ method under varying temperature with Raman spectroscopic technique.

  1. Roto-translational Raman spectra of pairs of hydrogen molecules from first principles.

    PubMed

    Gustafsson, Magnus; Frommhold, Lothar; Li, Xiaoping; Hunt, K L C

    2009-04-28

    We calculate the collision-induced, roto-translational, polarized, and depolarized Raman spectra of pairs of H(2) molecules. The Schrodinger equation of H(2)-H(2) scattering in the presence of a weak radiation field is integrated in the close-coupled scheme. This permits the accounting for the anisotropy of the intermolecular potential energy surface and thereby it includes mixing of polarizability components. The static polarizability invariants, trace and anisotropy, of two interacting H(2) molecules were obtained elsewhere [Li et al., J. Chem. Phys. 126, 214302 (2007)] from first principles. Here we report the associated spherical tensor components which, along with the potential surface, are input in the calculation of the supramolecular Raman spectra. Special attention is paid to the interferences in the wings of the rotational S(0)(0) and S(0)(1) lines of the H(2) molecule. The calculated Raman pair spectra show reasonable consistency with existing measurements of the polarized and depolarized Raman spectra of pairs of H(2) molecules.

  2. Raman and infrared spectra of minerals from ab initio molecular dynamics simulations: The spodumene crystal

    NASA Astrophysics Data System (ADS)

    Pagliai, Marco; Muniz-Miranda, Maurizio; Cardini, Gianni; Schettino, Vincenzo

    2011-05-01

    Ab initio molecular dynamics simulations with the Car-Parrinello method have been performed on the spodumene crystal at standard conditions and high pressure. Starting from the computed trajectories, accurate Raman and infrared spectra have been obtained and compared with available experimental measurements in the low and high pressure phases. The structural and spectroscopic changes due to the pressure effects are discussed.

  3. Simulations of Two-dimensional Infrared and Stimulated Resonance Raman Spectra of Photoactive Yellow Protein

    PubMed Central

    Preketes, Nicholas K; Biggs, Jason D; Ren, Hao; Andricioaei, Ioan; Mukamel, Shaul

    2012-01-01

    We present simulations of one and two-dimensional infrared (2DIR) and stimulated resonance Raman (SRR) spectra of the dark state (pG) and early red-shifted intermediate (pR) of photoactive yellow protein (PYP). Shifts in the amide I and Glu46 COOH stretching bands distinguish between pG and pR in the IR absorption and 2DIR spectra. The one-dimensional SRR spectra are similar to the spontaneous RR spectra. The two-dimensional SRR spectra show large changes in cross peaks involving the C=O stretch of the two species and are more sensitive to the chromophore structure than 2DIR spectra. PMID:24244064

  4. Calculation of Raman optical activity spectra for vibrational analysis.

    PubMed

    Mutter, Shaun T; Zielinski, François; Popelier, Paul L A; Blanch, Ewan W

    2015-05-01

    By looking back on the history of Raman Optical Activity (ROA), the present article shows that the success of this analytical technique was for a long time hindered, paradoxically, by the deep level of detail and wealth of structural information it can provide. Basic principles of the underlying theory are discussed, to illustrate the technique's sensitivity due to its physical origins in the delicate response of molecular vibrations to electromagnetic properties. Following a short review of significant advances in the application of ROA by UK researchers, we dedicate two extensive sections to the technical and theoretical difficulties that were overcome to eventually provide predictive power to computational simulations in terms of ROA spectral calculation. In the last sections, we focus on a new modelling strategy that has been successful in coping with the dramatic impact of solvent effects on ROA analyses. This work emphasises the role of complementarity between experiment and theory for analysing the conformations and dynamics of biomolecules, so providing new perspectives for methodological improvements and molecular modelling development. For the latter, an example of a next-generation force-field for more accurate simulations and analysis of molecular behaviour is presented. By improving the accuracy of computational modelling, the analytical capabilities of ROA spectroscopy will be further developed so generating new insights into the complex behaviour of molecules.

  5. Temperature effects in low-frequency Raman spectra of corticosteroid hormones

    NASA Astrophysics Data System (ADS)

    Minaeva, V. A.; Minaev, B. F.; Baryshnikov, G. V.; Surovtsev, N. V.; Cherkasova, O. P.; Tkachenko, L. I.; Karaush, N. N.; Stromylo, E. V.

    2015-02-01

    Experimental Raman spectra of the corticosteroid hormones corticosterone and desoxycorticosterone are recorded at different temperatures (in the range of 30-310 K) in the region of low-frequency (15-120 cm-1) vibrations using a solid-state laser at 532.1 nm. The intramolecular vibrations of both hormones are interpreted on the basis of Raman spectra calculated by the B3LYP/6-31G(d) density functional theory method. The intermolecular bonds in tetramers of hormones are studied with the help of the topological theory of Bader using data of X-ray structural analysis for crystalline samples of hormones. The total energy of intermolecular interactions in the tetramer of desoxycorticosterone (-49.1 kJ/mol) is higher than in the tetramer of corticosterone (-36.9 kJ/mol). A strong intramolecular hydrogen bond O21-H⋯O=C20 with an energy of -42.4 kJ/mol was revealed in the corticosterone molecule, which is absent in the desoxycorticosterone molecule. This fact makes the Raman spectra of both hormones somewhat different. It is shown that the low-frequency lines in the Raman spectra are associated with skeletal vibrations of molecules and bending vibrations of the substituent at the C17 atom. The calculated Raman spectrum of the desoxycorticosterone dimer allows one to explain the splitting and shift of some lines and to interpret new strong lines observed in the spectra at low temperatures, which are caused by the intermolecular interaction and mixing of normal vibrations in a crystal cell. On the whole the calculated frequencies are in a good agreement with the experimental results.

  6. Studies of the Raman spectra of cyclic and acyclic molecules: Combination and prediction spectrum methods

    NASA Astrophysics Data System (ADS)

    Kim, Taejin; Assary, Rajeev S.; Marshall, Christopher L.; Gosztola, David J.; Curtiss, Larry A.; Stair, Peter C.

    2012-04-01

    A combination of Raman spectroscopy and density functional methods was employed to investigate the spectral features of selected molecules: furfural, 5-hydroxymethyl furfural (HMF), methanol, acetone, acetic acid, and levulinic acid. The computed spectra and measured spectra are in excellent agreement, consistent with previous studies. Using the combination and prediction spectrum method (CPSM), we were able to predict the important spectral features of two platform chemicals, HMF and levulinic acid. The results have shown that CPSM is a useful alternative method for predicting vibrational spectra of complex molecules in the biomass transformation process.

  7. Studies of the Raman Spectra of Cyclic and Acyclic Molecules: Combination and Prediction Spectrum Methods

    SciTech Connect

    Kim, Taijin; Assary, Rajeev S.; Marshall, Christopher L.; Gosztola, David J.; Curtiss, Larry A.; Stair, Peter C.

    2012-04-02

    A combination of Raman spectroscopy and density functional methods was employed to investigate the spectral features of selected molecules: furfural, 5-hydroxymethyl furfural (HMF), methanol, acetone, acetic acid, and levulinic acid. The computed spectra and measured spectra are in excellent agreement, consistent with previous studies. Using the combination and prediction spectrum method (CPSM), we were able to predict the important spectral features of two platform chemicals, HMF and levulinic acid.The results have shown that CPSM is a useful alternative method for predicting vibrational spectra of complex molecules in the biomass transformation process.

  8. Combined use of infrared and Raman spectra in the characterization of orthoclase under various hydrostatic pressures.

    PubMed

    Liu, Rui; Wang, Zhi-Hua; Xu, Qiang; Yu, Na; Cao, Miao-Cong

    2014-02-01

    Colorless and pink orthoclase from Balikun granite body, East Zhunger in Xinjiang, served as the samples for the research on hydrostatic pressure experiment. The in-situ hydrostatic pressure test for orthoclases was conducted at the room temperature and pressures from 100 to 600 MPa using cubic zirconia anvil cell, with quartz as pressure gauge. The water located in the orthoclases for the conditions of different hydrostatic pressures was characterized through the methods of Fourier transform infrared (FTIR) and Raman spectra. The results showed that there was a linear correlation between the shifting of Raman bands and hydrostatic pressure applied to the feldspar. All of vibration peaks of M-O structural groups in orthoclases, the bending vibration peaks of Si(Al(IV))-O-Si bond and tetrahedron groups of [SiO4] in Raman spectra shifted toward the higher frequency regularly, the drift distance is 2, 2.19 and less than 2 cm(-1) respectively. The spectra of FTIR suggested that there was more water in colorless orthoclases than the pink one under certain conditions of hydrostatic pressure. The intensity and integral area centered at 3420 cm(-1) in FTIR spectra increased with the rising of hydrostatic pressure. The integral area for colorless and pink feldspar in FTIR spectra rose from 120, 1383 cm(-1) under normal pressure to 1570, 2001 cm(-1) at 600 MPa respectively. The experimental results might indicate that the water in the earth crust could enter the orthoclases in certain condition of the aqueous confining pressure.

  9. 2 + 1 REMPI spectra of cyclic ketones in a cold molecular beam. 2. The n. -->. 3s Rydberg transition of methyl-substituted cyclohexanones and cyclopentanones

    SciTech Connect

    Cornish, T.J.; Baer, T.

    1988-05-11

    The two-photon excitation of the n ..-->.. 3s Rydberg transition in monomethyl and dimethyl isomers of cyclohexanone and cyclopentanone has been studied by resonance enhanced multiphoton ionization (2 + 1 REMPI). This transition has been found to be highly sensitive to both the orientation and position of methyl substituents on the cyclic ketone ring. Cis and trans configurations of dimethyl isomers show characteristic 3s transition energy shifts which are additive in nature and can be used to predict the transition energy of other structures. The spectroscopic energies of configurational isomers appear to reflect relative ground-state stabilities. This correlation has been supported by thermodynamic data and molecular mechanics calculations of ground-state energies. Laser polarization effects are found to be useful in determining the degree of chromophore asymmetry in chiral molecules.

  10. In Situ Raman Spectra from the SeaCliff Hydrothermal Field (Gorda Ridge)

    NASA Astrophysics Data System (ADS)

    White, S. N.; Dunk, R. M.; Brewer, P. G.; Peltzer, E. T.; Sherman, A. D.; Freeman, J. J.

    2004-12-01

    MBARI's in situ laser Raman spectrometer (DORISS - Deep Ocean Raman In Situ Spectrometer) was deployed at the SeaCliff Hydrothermal Field on the Gorda Ridge in July 2004. The first in situ Raman spectra of hydrothermal minerals and high-temperature fluid venting from the seafloor were obtained. These spectra are analyzed and compared to laboratory measurements of samples collected from the site. Laser Raman spectroscopy is a proven, powerful geochemical technique for analyzing the chemical composition and molecular structure of solids, liquids, and gases. During an expedition to Gorda Ridge on the R/V Western Flyer in July 2004, DORISS was deployed successfully by the ROV Tiburon at hydrothermal vents on the seafloor ( ˜2700 m depth). Data were collected from hydrothermal fluids, chimney minerals (e.g., anhydrite and barite), and bacterial mats using two types of sampling optics: an immersion optic, and a non-contact optic. To collect spectra from opaque mineral samples, a precision underwater positioner (PUP) was used to position the DORISS probe head. PUP is a stand-alone, three degree-of-freedom positioner capable of moving the DORISS probe head with a precision of 0.1 mm (required by the small focal volume of the sampling optic). Raman spectra were collected of ˜300° C vent fluids with both sampling optics. The Raman spectrum of seawater contains bands from the bending ( ˜1640 cm-1) and stretching (3000-3700 cm-1) vibrational modes of the water molecule and a small peak from the S-O stretch of the sulfate ion ( ˜981 cm-1). Compared to ˜2° C ambient seawater, vent fluid spectra show changes in the intensity ratios of the water bands due to the elevated temperature, and the sulfate peak is reduced. Additional components of hydrothermal fluid are present in such low concentrations that it is difficult to detect them with the current Raman system. The chimneys in the SeaCliff field are primarily anhydrite, and debris in the area also contains barite. We were

  11. Theoretical studies on absorption, emission, and resonance Raman spectra of Coumarin 343 isomers.

    PubMed

    Wu, Wenpeng; Cao, Zexing; Zhao, Yi

    2012-03-21

    The vibrationally resolved spectral method and quantum chemical calculations are employed to reveal the structural and spectral properties of Coumarin 343 (C343), an ideal candidate for organic dye photosensitizers, in vacuum and solution. The results manifest that the ground-state energies are dominantly determined by different placements of hydrogen atom in carboxylic group of C343 conformations. Compared to those in vacuum, the electronic absorption spectra in methanol solvent show a hyperchromic property together with the redshift and blueshift for the neutral C343 isomers and their deprotonated anions, respectively. From the absorption, emission, and resonance Raman spectra, it is found that the maximal absorption and emission come from low-frequency modes whereas the high-frequency modes have high Raman activities. The detailed spectra are further analyzed for the identification of the conformers and understanding the potential charge transfer mechanism in their photovoltaic applications.

  12. First-principles simulation of Raman spectra and structural properties of quartz up to 5 GPa

    NASA Astrophysics Data System (ADS)

    Liu, Lei; Lv, Chao-Jia; Zhuang, Chun-Qiang; Yi, Li; Liu, Hong; Du, Jian-Guo

    2015-12-01

    The crystal structure and Raman spectra of quartz are calculated by using first-principles method in a pressure range from 0 to 5 GPa. The results show that the lattice constants (a, c, and V) decrease with increasing pressure and the a-axis is more compressible than the c axis. The Si-O bond distance decreases with increasing pressure, which is in contrast to experimental results reported by Hazen et al. [Hazen R M, Finger L W, Hemley R J and Mao H K 1989 Solid State Communications 725 507-511], and Glinnemann et al. [Glinnemann J, King H E Jr, Schulz H, Hahn T, La Placa S J and Dacol F 1992 Z. Kristallogr. 198 177-212]. The most striking changes are of inter-tetrahedral O-O distances and Si-O-Si angles. The volume of the tetrahedron decreased by 0.9% (from 0 to 5 GPa), which suggests that it is relatively rigid. Vibrational models of the quartz modes are identified by visualizing the associated atomic motions. Raman vibrations are mainly controlled by the deformation of the tetrahedron and the changes in the Si-O-Si bonds. Vibrational directions and intensities of atoms in all Raman modes just show little deviations when pressure increases from 0 to 5 GPa. The pressure derivatives (dνi/dP) of the 12 Raman frequencies are obtained at 0 GPa-5 GPa. The calculated results show that first-principles methods can well describe the high-pressure structural properties and Raman spectra of quartz. The combination of first-principles simulations of the Raman frequencies of minerals and Raman spectroscopy experiments is a useful tool for exploring the stress conditions within the Earth. Project supported by the Key Laboratory of Earthquake Prediction, Institute of Earthquake Science, China Earthquake Administration (CEA) (Grant No. 2012IES010201) and the National Natural Science Foundation of China (Grant Nos. 41174071 and 41373060).

  13. Biophotonics of skin: method for correction of deep Raman spectra distorted by elastic scattering

    NASA Astrophysics Data System (ADS)

    Roig, Blandine; Koenig, Anne; Perraut, François; Piot, Olivier; Gobinet, Cyril; Manfait, Michel; Dinten, Jean-Marc

    2015-03-01

    Confocal Raman microspectroscopy allows in-depth molecular and conformational characterization of biological tissues non-invasively. Unfortunately, spectral distortions occur due to elastic scattering. Our objective is to correct the attenuation of in-depth Raman peaks intensity by considering this phenomenon, enabling thus quantitative diagnosis. In this purpose, we developed PDMS phantoms mimicking skin optical properties used as tools for instrument calibration and data processing method validation. An optical system based on a fibers bundle has been previously developed for in vivo skin characterization with Diffuse Reflectance Spectroscopy (DRS). Used on our phantoms, this technique allows checking their optical properties: the targeted ones were retrieved. Raman microspectroscopy was performed using a commercial confocal microscope. Depth profiles were constructed from integrated intensity of some specific PDMS Raman vibrations. Acquired on monolayer phantoms, they display a decline which is increasing with the scattering coefficient. Furthermore, when acquiring Raman spectra on multilayered phantoms, the signal attenuation through each single layer is directly dependent on its own scattering property. Therefore, determining the optical properties of any biological sample, obtained with DRS for example, is crucial to correct properly Raman depth profiles. A model, inspired from S.L. Jacques's expression for Confocal Reflectance Microscopy and modified at some points, is proposed and tested to fit the depth profiles obtained on the phantoms as function of the reduced scattering coefficient. Consequently, once the optical properties of a biological sample are known, the intensity of deep Raman spectra distorted by elastic scattering can be corrected with our reliable model, permitting thus to consider quantitative studies for purposes of characterization or diagnosis.

  14. IR absorption and surface-enhanced Raman spectra of the isoquinoline alkaloid berberine

    NASA Astrophysics Data System (ADS)

    Strekal', N. D.; Motevich, I. G.; Nowicky, J. W.; Maskevich, S. A.

    2007-01-01

    We present the IR absorption and surface-enhanced Raman scattering (SERS) spectra of the isoquinoline alkaloid berberine adsorbed on a silver hydrosol and on the surface of a silver electrode for different potentials. Based on quantum chemical calculations, for the first time we have assigned the vibrations in the berberine molecule according to vibrational mode. The effect of the potential of the silver electrode on the geometry of sorption of the molecule on the surface is considered, assuming a short-range mechanism for enhancement of Raman scattering.

  15. Principal components analysis of FT-Raman spectra of ex vivo basal cell carcinoma

    NASA Astrophysics Data System (ADS)

    Martin, Airton A.; Bitar Carter, Renata A.; de Oliveira Nunes, Lilian; Loschiavo Arisawa, Emilia A.; Silveira, Landulfo, Jr.

    2004-07-01

    FT-Raman spectroscopy is a modern analytical tool and it is believed that its use for skin cancer diagnosis will lead to several advantages for patients, e.g., faster results and a minimization of invasivity. This article reports results of an ex Vivo study of the FT-Raman spectra regarding differentiation between non-diseased and malignant human skin lesions, Basal Cell Carcinoma (BCC). A Nd: YAG laser at 1064nm was used as the excitation source in the FT-Raman, RFS 100/S Spectrometer, Bruker. Thirty-nine sets of human skin samples, 18 histopathologically diagnosed as non-diseased, and 21 as BCC, were obtained during routine therapeutic procedures required by the primary disease. No sample preparation was needed to promote the FT-Raman spectra collection. The main spectral features, which may differentiate the sample, were found in the shift region of Amide I (1640 to 1680 cm-1), Amide III (1220 to 1330cm-1), proteins and lipids (1400 to 1500 cm-1), amino acids (939 to 940 cm-1) and deoxyribonucleic acid (1600 to 1620cm-1). Principal Components Analysis (PCA) was applied to FT-Raman spectra of Basal Cell Carcinoma. Analysis was performed on mean-normalized and mean-centered data of the non-diseased skin and BCC spectra. The dynamic loading of PCA was expanded into 2D contour by calculating a variance-covariance matrix. PCA was used to verify the statistical differences in the sample. This technique applied over all samples identified tissue type within 83% of sensitivity and 100% specificity. The PCA technique proved efficient for analysis in skin tissue ex vivo, results were significant and coherent.

  16. Raman and infrared spectra and theoretical calculations of dipicolinic acid, dinicotinic acid, and their dianions

    NASA Astrophysics Data System (ADS)

    McCann, Kathleen; Laane, Jaan

    2008-11-01

    The Raman and infrared spectra of dipicolinic acid (DPA) and dinicotinic acid (DNic) and their salts (CaDPA, Na 2DPA, and CaDNic) have been recorded and the spectra have been assigned. Ab initio and DFT calculations were carried out to predict the structures and vibrational spectra and were compared to the experimental results. Because of extensive intermolecular hydrogen bonding in the crystals of these molecules, the calculated structures and spectra for the individual molecules agree only moderately well with the experimental values. Theoretical calculations were also carried out for DPA dimers and DPA·2H 2O to better understand the intermolecular interactions. The spectra do show that DPA and its calcium salt, which are present in anthrax spores, can be distinguished from the very similar DNic and CaDNic.

  17. Calorimetry-Derived Composition Vectors to Resolve Component Raman Spectra in Phospholipid Phase Transitions.

    PubMed

    Kitt, Jay P; Bryce, David A; Harris, Joel M

    2016-07-01

    Multidimensional least squares analysis is a well-established technique for resolving component vibrational spectra from mixed samples or systems. Component resolution of temperature-dependent vibrational spectra is challenging, however, due to the lack of a suitable model for the variation in sample composition with temperature. In this work, analysis of temperature-dependent Raman spectra of lipid membranes is accomplished by using "concentration" vectors independently derived from enthalpy changes determined by differential scanning calorimetry. Specifically, the lipid-bilayer phase transitions of DMPC (1,2-dipalmitoyl-sn-glycero-3-phosphocholine) are investigated through Raman spectra acquired from individual, optically trapped vesicles in suspension as a function of temperature. Heat capacity profiles of the same vesicle suspension are measured using differential scanning calorimetry and numerically integrated to generate enthalpy change curves of each phase transition, which are in turn used to construct composition vectors. Multidimensional least squares analysis optimized for a fit to these composition vectors allows resolution of the component spectra corresponding to gel, ripple, and liquid-crystalline phases of the DMPC. The quality of fit of the calorimetry-derived results is confirmed by unstructured residual differences between the data and the model, and a composition variation predicted by the resolved spectra that matches the calorimetry results. This approach to analysis of temperature-dependent spectral data could be readily applied in other areas of materials characterization, where one is seeking to learn about structural changes that occur through temperature-dependent phase transitions. PMID:27273975

  18. [Raman spectra and its application of graphite enclaves in nephrite-jades in Xiuyan, Liaoning].

    PubMed

    Qiu, Zhi-li; Jiang, Qi-yun; Luo, Han; Qin, She-cai; Li, Liu-fen

    2010-11-01

    Xiuyan, Liaoning was an important locality of jade material of the Red Mountain Culture in the Neolithic Age in Chinese history where there are two types of raw material of nephrite jades, namely gravel nephrite jade (Hemo Yu in Chinese) and old nephrite jade (Lao Yu in Chinese). In the present paper, Laser Raman spectrum technique was applied to analyze the graphite enclaves in the nephrite jades of the two types of materials. The results show that the graphite enclaves in the two types of jades have different characteristics of Raman spectra, indicating that they probably were formed under different geological conditions, or originated from different ore-forming periods or were exploited from different section of ore body. Hence, laser Raman spectrum technique could be used as a supplementary measure for nondestructive detection to determine the occurrence of jades.

  19. [Comparison and analysis of laser Raman spectra of common drinking water].

    PubMed

    Yang, Chang-hu; Yuan, Jian-hui; Zeng, Xiao-ying

    2007-10-01

    In order to detect the drinking water quality in our country at the present time effectively, several brand brands of drinking water on the market and the distilled water that laboratory offered were measured and calculad were measured and calculated. The laser Raman spectra of samples were measured, while the sample's degree of degeneracy polarization at the symmetric stretching peak was calculated from the measurements. Results indicate that the relative intensity of the Raman spectrum and the degree of degeneracy polarization follow the same rule. Through comparison and analysis of the results of measurement and calculation, it is concluded that we can judge the relative content of mineral substance of drinking water by comparing the strengths of laser Raman spectrum characteristic peak and the magnitudes of the sample's degree of degeneracy polarization at the same characteristic peak. This conclusion will provide us a new and effective path to assaying the quality of drinking water.

  20. [Study on the frontier orbital and Raman spectra of Aflatoxin B1 and isomer].

    PubMed

    Li, Tao; Tang, Yan-lin; Ling, Zhi-gang; Long, Zheng-wen

    2014-08-01

    Through computation, this paper obtained Aflatoxin B1 and its trans-isomer molecules stable structure which was rarely reported by the density functional theory(DFT) with B3LYP complex function and 6-311 + g(d, p) basis set. Through a single point calculations and geometry analysis, we know that the cis-structure is more stable than trans-structure. On the basis of this, Raman spectra of two molecules are calculated by the same method and basis set. compared with the Aflatoxin B1 cis-structure powder experimental Raman spectra, it was informed that numerical results with experimental results combined with a better. While 1582, 3065, 1626 means to take the strongest of the three peaks of cis-structure raman characteristics, 1616, 3065, 1659 cm(-1) is indicated for the strongest of the three peaks of trans-structure raman characteristics. Use the Hirshfeld atom division method combined with Multiwfn software to analyze the composition of frontier orbital based on optimization calculation, and it was informed that the electrophilic ability of two monlecules was stronger than the nucleophilic ability. The proportion of C1 atoms in LUMO orbital are respectively 21.48 percent, 20.62 percent by calculating, thus it is predicted that C1 atom is most main position spot depriving of the electronic in DNA to cause cancer. The above-mentioned research has certain theoretical directive significance in detection, transformation and toxicity inhibition of the cis-trans isomers.

  1. Remote Raman spectra of benzene obtained from 217 meters using a single 532 nm laser pulse.

    PubMed

    Chen, Teng; Madey, John M J; Price, Frank M; Sharma, Shiv K; Lienert, Barry

    2007-06-01

    This report describes a mobile Raman lidar system that has been developed for spectral measurements of samples located remotely at ranges of hundreds of meters. The performance of this system has been quantitatively verified in a lidar calibration experiment using a hard target of standardized reflectance. A new record in detection range was achieved for remote Raman systems using 532 nm laser excitation. Specifically, Raman spectra of liquid benzene were measured with an integration time corresponding to a single 532 nm laser pulse at a distance of 217 meters. The single-shot Raman spectra at 217 meters demonstrated high signal-to-noise ratio and good resolution sufficient for the unambiguous identification of the samples of interest. The transmitter consists of a 20 Hz Nd:YAG laser emitting at 532 nm and 1064 nm and a 178 mm telescope through the use of which allows the system to produce a focused beam at the target location. The receiver consists of a large custom telescope (609 mm aperture) and a Czerny-Turner monochromator equipped with two fast photomultiplier tubes. PMID:17650374

  2. In situ laser Raman spectra of iron phthalocyanine adsorbed on copper and gold electrodes. [Electronic structure

    SciTech Connect

    Melendres, C.A.; Rios, C.B.; Feng, X.; McMasters, R.

    1983-01-01

    Raman spectra of iron phthalocyanine (FePc) and its tetrasulfonated derivative (FeTSPc) adsorbed on copper and gold electrodes have been observed in situ in 0.05 M H/sub 2/SO/sub 4/ solution. Results confirm the authors previous finding on the coordination of FePc to water molecules to solution. Evidence suggests that the iron phthalocyanines are probably oriented with their planes parallel to the electrode surface even in immersed electrodes. A decrease in intensity and broadening of some vibrational bands are observed on increasing cathodic polarization; these are attributed to a lifting of the degeneracy of the vibrational modes due to a change in symmetry of the adsorbed molecules brought about by polarization induced by the double-layer field. The effect of carbon on the Raman spectra is discussed. The iron phthalocyanines appear to be stable at potentials close to hydrogen evolution in the absence of oxygen. 18 references, 8 figures.

  3. In situ laser Raman spectra of iron phthalocyanine adsorbed on copper and gold electrodes

    SciTech Connect

    Melendres, C.A.; Rios, C.B.; Feng, X.; McMasters, R.

    1983-09-01

    Raman spectra of iron phthalocyanine (FePc) and its tetrasulfonated derivative (FeTSPc) adsorbed on copper and gold electrodes have been observed in situ in 0.05 M H/sub 2/SO/sub 4/ solution. Results confirm our previous finding on the coordination of FePc to water molecules to solution. Evidence suggests that the iron phthalocyanines are probably oriented with their planes parallel to the electrode surface even in immersed electrodes. A decrease in intensity and broadening of some vibrational bands are observed on increasing cathodic polarization; these are attributed to a lifting of the degeneracy of the vibrational modes due to a change in symmetry of the adsorbed molecules brought about by polarization induced by the double-layer field. The effect of carbon on the Raman spectra is discussed. The iron phthalocyanines appear to be stable at potentials close to hydrogen evolution in the absence of oxygen. 8 figures.

  4. Vibrational modes and resonant Raman spectra of new B2C nanoribbons

    NASA Astrophysics Data System (ADS)

    Li, Xiaowei; Xu, Yuehua; Dong, Jinming

    2011-07-01

    The vibrational properties and first-order resonant Raman spectra of new B2C nanoribbons (B2C-NRs) have been studied by the density functional theory. It is found that there is a characteristic radial-breathing-like mode (RBLM) for all the calculated B2C-NRs with their frequency varying in a linear proportion to the inverse square root of the B2C-NR's width, whose slope depends closely on the types of B2C-NRs. The RBLM resonant peak's intensities and positions in the first-order resonant Raman spectra of the B2C-NRs are found to depend greatly on the polarizations of the incident and scattered light, and also the types of B2C-NRs.

  5. Interpreting coherent anti-Stokes Raman spectra measured with multimode Nd:YAG pump lasers

    SciTech Connect

    Farrow, R.L.; Rahn, L.A.

    1985-06-01

    We report comparisons of coherent anti-Stokes Raman spectroscopy (CARS) measurements using single-axial-and multiaxial-mode Nd:YAG lasers. Our results demonstrate the validity of a recently proposed convolution expression for unresolved CARS spectra. The results also support the use of a relative delay of several coherence lengths between pump-beam paths for reducing the effects of pump-field statistics on the CARS spectral profile.

  6. Anharmonic infrared and Raman spectra in Car-Parrinello molecular dynamics simulations

    NASA Astrophysics Data System (ADS)

    Pagliai, Marco; Cavazzoni, Carlo; Cardini, Gianni; Erbacci, Giovanni; Parrinello, Michele; Schettino, Vincenzo

    2008-06-01

    The infrared and Raman spectra of naphthalene crystal with inclusion of anharmonic effects have been calculated by adopting the generalized variational density functional perturbation theory in the framework of Car-Parrinello molecular dynamics simulations. The computational approach has been generalized for cells of arbitrary shape. The intermolecular interactions have been analyzed with and without the van der Waals corrections, showing the importance of such interactions in the naphthalene crystal to reproduce the structural, dynamical, and spectroscopic properties.

  7. Spectral Signatures for the Classification of Microbial Species using Raman Spectra

    SciTech Connect

    Webb-Robertson, Bobbie-Jo M.; Bailey, Vanessa L.; Fansler, Sarah J.; Wilkins, Michael J.; Hess, Nancy J.

    2012-06-14

    In general, classification-based methods based on Confocal Raman microscopy are focused on targeted studies under which the spectral libraries are collected under controlled instrument parameters, which facilitate analyses via standard multivariate data analysis methods and cross-validation. We develop and compare approaches to combine spectra collected at different times and varying levels of spectral resolution into a single spectral library. We demonstrate these approaches on a relevant test case; the identification of microbial species from a natural environment.

  8. Raman spectra of probably shock-metamorphosed zircon in structures of the Kola Peninsula

    NASA Astrophysics Data System (ADS)

    Kaulina, Tatiana; Nerovich, Luidmila; Lialina, Luidmila; Il'chenko, Vadim; Bocharov, Vladimir; Kunakkuzin, Evgeny

    2016-04-01

    Zircon crystals were studied by means of Raman spectroscopy from certain structures of the Kola Peninsula, for which impact events are expected according to geological and geochemical data: circular structure in Javrozersky area of the Tanaelv belt and granophyres of Jarva-Varaka layered massif of the Monchegorsky ore district. Zircons from anorthosites of the Javrozersky area showed some features of impact zircons: wavy extinction, blurred "aurora-like" CL image and a presence of additional bands in the Raman spectrum, which may indicate the presence of ZrSiO4 with the scheelite-type structure (reidite) surrounded by zircon material. Zircon crystals of Yavra-Varaka granophyres showed variation of Raman spectra from the core part of crystals with typical zircon Raman pattern to complete absence of spectral bands in the marginal parts and rims. There was also a transition zone between cores and marginal parts of crystals, where the Raman spectrum is "blurred". Such pattern may be associated with the transformation of crystalline zircon to diaplectic glass under the influence of shock metamorphism, since the Jarva-Varaka massif according to geological and geochemical data is compared with the Sudbury structure, for which impact origin is assumed. The work is supported by RSF grant N 16-17-10051.

  9. Calculation of collisionally narrowed coherent anti-Stokes Raman spectroscopy spectra

    SciTech Connect

    Koszykowski, M.L.; Farrow, R.L.; Palmer, R.E.

    1985-10-01

    High-resolution coherent anti-Stokes Raman spectroscopy spectra of the N/sub 2/ Q branch at 294 K have been obtained at 1, 5, and 10 atm. Even at 1-atm pressure, disagreements with spectra calculated using the isolated line approximation were observed, indicating the importance of collisional narrowing effects in describing these spectra. A method of using the full G-matrix approach for the calculation of these spectra that is both exact and computationally efficient (requiring only one matrix diagonalization and inversion per spectrum) is discussed. Excellent agreement with experimental data is obtained using this method and a simple exponential gap model for the off-diagonal G-matrix elements.

  10. Factor analysis for isolation of the Raman spectra of aqueous sulfuric acid components

    SciTech Connect

    Malinowski, E.R.; Cox, R.A.; Haldna, U.L.

    1984-04-01

    The Raman spectra of 16 sulfuric acid/water mixtures over the entire mole fraction range were studied by various factor analysis techniques. Abstract factor analysis showed that three factors account for 98.69% of the variation in the data with a real error of 13%. Key-set factor analysis, was used to identify three spectral wavenumbers unique to each component. Spectral-isolation factor analysis, based on the key wavenumbers, revealed the spectra of each unknown component. Target factor analysis, based on the isolated spectra, yielded the relative amounts of the three spectral components. The concentration profiles obtained from the factor loadings, as well as the isolated spectra, were used to identify the chemical species.

  11. Multivariate statistical classification of surface enhanced Raman spectra of chemical and biological warfare agent simulants

    NASA Astrophysics Data System (ADS)

    Fountain, Augustus W., III; Pearman, William F.

    2005-11-01

    Initial results which demonstrate the ability to classify surface enhanced Raman (SERS) spectra of chemical and biological warfare agent simulants are presented. The spectra of 2 endospores (B. subtilis, B. atrophaeus); 2 chemical agent simulants (Dimethyl methylphosphonate (DMMP), Diethyl methylphosphonate (DEMP)); and 2 toxin simulants (Ovalbumin, Horseradish peroxidase) were collected on multiple substrates fabricated from colloidal gold adsorbed onto a silanized quartz surface. The use of principle component analysis (PCA) and Hierarchical Clustering was used as a method of determining the reproducibility of the individual spectra collected from a single substrate. Additionally, the use of partial least squares-discriminate analysis (PLS-DA) and soft independent modeling of class analogies (SIMCA) on a compilation of data from separate substrates, fabricated under identical conditions, demonstrates the feasibility of this technique for the identification of known but previously unclassified spectra.

  12. Manifestation of hydrogen bonds of aqueous ethanol solutions in the Raman scattering spectra

    SciTech Connect

    Dolenko, T A; Burikov, S A; Patsaeva, S V; Yuzhakov, V I

    2011-03-31

    Spectra of Raman scattering of light by aqueous ethanol solutions in the range of concentrations from pure water to 96% alcohol are studied. For water, 25%, and 40% solutions of ethanol in water, as well as for 96% alcohol the Raman spectra are measured at temperatures from the freezing point to nearly the boiling point. The changes in the shape of the stretching OH band are interpreted in terms of strengthening or weakening of hydrogen bonds between the molecules in the solution. The strongest hydrogen bonding of hydroxyl groups is observed at the ethanol content from 20 to 25 volume percent, which is explained by formation of ethanol hydrates of a definite type at the mentioned concentrations of alcohol. This is confirmed by means of the method of multivariate curve resolution, used to analyse the Raman spectra of aqueous ethanol solutions. With growing temperature the weakening of hydrogen bonding occurs in all studied systems, which consists in reducing the number of OH groups, linked by strong hydrogen bonds. (laser applications and other problems in quantum electronics)

  13. Time-dependent density functional methods for Raman spectra in open-shell systems.

    PubMed

    Aquino, Fredy W; Schatz, George C

    2014-01-16

    We present an implementation of a time-dependent density functional theory (TD-DFT) linear response module in NWChem for unrestricted DFT calculations and apply it to the calculation of resonant Raman spectra in open-shell molecular systems using the short-time approximation. The new source code was validated and applied to simulate Raman spectra on several doublet organic radicals (e.g., benzyl, benzosemiquinone, TMPD, trans-stilbene anion and cation, and methyl viologen) and the metal complex copper phthalocyanine. We also introduce a divide-and-conquer approach for the evaluation of polarizabilities in relatively large systems (e.g., copper phthalocyanine). The implemented tool gives comparisons with experiment that are similar to what is commonly found for closed-shell systems, with good agreement for most features except for small frequency shifts, and occasionally large deviations for some modes that depend on the molecular system studied, experimental conditions not being accounted in the modeling such as solvation effects and extra solvent-based peaks, and approximations in the underlying theory. The approximations used in the quantum chemical modeling include (i) choice of exchange-correlation functional and basis set; (ii) harmonic approximation used in the frequency analysis to determine vibrational normal modes; and (iii) short-time approximation (omission of nuclear motion effects) used in calculating resonant Raman spectra. PMID:24380604

  14. Ultraviolet Raman spectroscopy of catalysts: Adsorption and coke formation in zeolites and vibrational spectra of supported metal oxides

    NASA Astrophysics Data System (ADS)

    Chua, Yek Tann

    2001-10-01

    The primary goal of this dissertation is to study the physicochemical and catalytic properties of zeolites and supported metal oxide catalysts using UV Raman spectroscopy. In order to reduce the thermal degradation and possible photodecomposition of adsorbates by UV radiation, we have developed a novel fluidized bed method for measuring the UV Raman spectra of catalysts and adsorbates. The UV Raman spectra of various organic compounds adsorbed in zeolites H-USY and H-ZSM-5 are recorded. When measurements are performed on stationary and spinning samples, the Raman spectra show the presence of coke, a typical end product of heat and photochemistry. In contrast, the Raman peaks of the unreacted adsorbates dominate the spectra measured using the fluidized bed method. These results indicate that the fluidized bed technique is a good method for measuring UV Raman spectra of catalysts and adsorbates. The formation of coke in the methanol-to-gasoline conversion over zeolite H-ZSM-5 causes deactivation of the catalyst. To gain insight into the formation of coke, we have studied this reaction using UV Raman spectroscopy. The Raman spectral changes suggest coke is produced from conjugated olefins via cyclopentadiene intermediates. Aromatic compounds in gasoline may also be produced from cyclopentadienes. The adsorbate-induced structural changes of zeolites may alter the molecular sieving characteristics of these materials which ultimately affect their performance as catalysts and adsorbents. We have quantified the adsorbate-induced structural changes of zeolite H-RHO using UV Raman spectroscopy. The Raman spectra of the zeolite after the adsorption of water, methanol or acetonitrile are consistent with an increase in the average T-O-T angle of the zeolite of 5-8°. The adsorption of ammonia, on the other hand, decreases the average T-O-T angle by 5°. Because of certain advantages of UV Raman spectroscopy over visible Raman spectroscopy, recently there is a strong interest in

  15. Characterisation of Raman spectra of high purity olivine as a function of temperature and shock history.

    NASA Astrophysics Data System (ADS)

    Hibbert, R.; Price, M. C.; Burchell, M. J.; Cole, M. J.

    2014-04-01

    ExoMars' Raman Laser Spectrometer (RLS, [1], [2]) will be the first Raman spectrometer deployed on another planetary body. It is probable the rover will land on the ancient terrain (TBD) within transverse distance to several impact craters where the rocks are estimated to be >3 billion years old. These ancient terrains have been subjected to impacts, and work at Kent has shown such impacts result in modification of minerals and organics [3, 4] and can induce a loss of volatiles [5, 6, 7]. This highlights some problematic scenarios for the interpretation of Raman spectra collected by ExoMars: i) The spectra of impact generated minerals may be misinterpreted since their signatures have not been systematically characterised; ii) The materials produced by the degradation of organic (biologically significant) compounds during impact are unknown, and consequently may be overlooked as evidence for life; iii) Shocked hydrated minerals may be erroneously identified as anhydrous, since it is currently unknown whether there is a spectral difference between volatile rich minerals that have been shocked and their anhydrous counterparts. Our primary goal is therefore to study impact modification. Using the Light Gas Gun at Kent [8], we have shocked minerals under Martian conditions and compared their Raman spectra from before and after impact. Thus far, we have conducted experiments by a firing a buckshot of ~50 μm molybdenum spheres onto gem quality olivine (peridots, which have a very clean and consistent composition) and analysing the impact craters on the surface of the sample using Raman spectroscopy. Raman spectroscopy is generally regarded as a nondestructive technique, however, concentrated laser power can generate localised heating leading to devolatisation, crystalline changes, and even melting of the sample. This can lead to misinterpretation of spectral data (such as incorrect mineralogical composition). Therefore, we have also set out to study and quantify any

  16. Surface-Enhanced Resonance Raman Spectra of Langmuir-Blodgett Films of Tetra-Lauryl Chloroaluminum Phthalocyanine

    NASA Astrophysics Data System (ADS)

    Luo, Tao; Zhang, Weiqing; Gan, Fuxi

    1992-07-01

    The Langmuir-Blodgett (LB) films of tetra-lauryl chloroaluminum phthalocyanine (TLAlClPc) and a 1:1 mixture of TLAlClPc and stearyl alcohol (SA) were prepared. The Raman spectrum of solid TLAlClPc in KBr pellet was investigated. All the Raman lines were assigned. The surface-enhanced resonance Raman spectra of the LB films deposited on the silver island film that were vacuum-deposited on glass slides have been observed.

  17. Combined use of infrared and Raman spectra in the characterization of orthoclase under various hydrostatic pressures.

    PubMed

    Liu, Rui; Wang, Zhi-Hua; Xu, Qiang; Yu, Na; Cao, Miao-Cong

    2014-02-01

    Colorless and pink orthoclase from Balikun granite body, East Zhunger in Xinjiang, served as the samples for the research on hydrostatic pressure experiment. The in-situ hydrostatic pressure test for orthoclases was conducted at the room temperature and pressures from 100 to 600 MPa using cubic zirconia anvil cell, with quartz as pressure gauge. The water located in the orthoclases for the conditions of different hydrostatic pressures was characterized through the methods of Fourier transform infrared (FTIR) and Raman spectra. The results showed that there was a linear correlation between the shifting of Raman bands and hydrostatic pressure applied to the feldspar. All of vibration peaks of M-O structural groups in orthoclases, the bending vibration peaks of Si(Al(IV))-O-Si bond and tetrahedron groups of [SiO4] in Raman spectra shifted toward the higher frequency regularly, the drift distance is 2, 2.19 and less than 2 cm(-1) respectively. The spectra of FTIR suggested that there was more water in colorless orthoclases than the pink one under certain conditions of hydrostatic pressure. The intensity and integral area centered at 3420 cm(-1) in FTIR spectra increased with the rising of hydrostatic pressure. The integral area for colorless and pink feldspar in FTIR spectra rose from 120, 1383 cm(-1) under normal pressure to 1570, 2001 cm(-1) at 600 MPa respectively. The experimental results might indicate that the water in the earth crust could enter the orthoclases in certain condition of the aqueous confining pressure. PMID:24822414

  18. Vibrational infrared and Raman spectra of polypeptides: Fragments-in-fragments within molecular tailoring approach

    NASA Astrophysics Data System (ADS)

    Sahu, Nityananda; Gadre, Shridhar R.

    2016-03-01

    The present work reports the calculation of vibrational infrared (IR) and Raman spectra of large molecular systems employing molecular tailoring approach (MTA). Further, it extends the grafting procedure for the accurate evaluation of IR and Raman spectra of large molecular systems, employing a new methodology termed as Fragments-in-Fragments (FIF), within MTA. Unlike the previous MTA-based studies, the accurate estimation of the requisite molecular properties is achieved without performing any full calculations (FC). The basic idea of the grafting procedure is implemented by invoking the nearly basis-set-independent nature of the MTA-based error vis-à-vis the respective FCs. FIF has been tested out for the estimation of the above molecular properties for three isomers, viz., β-strand, 310- and α-helix of acetyl(alanine)nNH2 (n = 10, 15) polypeptides, three conformers of doubly protonated gramicidin S decapeptide and trpzip2 protein (PDB id: 1LE1), respectively, employing BP86/TZVP, M06/6-311G**, and M05-2X/6-31G** levels of theory. For most of the cases, a maximum difference of 3 cm-1 is achieved between the grafted-MTA frequencies and the corresponding FC values. Further, a comparison of the BP86/TZVP level IR and Raman spectra of α-helical (alanine)20 and its N-deuterated derivative shows an excellent agreement with the existing experimental spectra. In view of the requirement of only MTA-based calculations and the ability of FIF to work at any level of theory, the current methodology provides a cost-effective solution for obtaining accurate spectra of large molecular systems.

  19. Fermi energy dependence of first- and second-order Raman spectra in graphene: Kohn anomaly and quantum interference effect

    NASA Astrophysics Data System (ADS)

    Hasdeo, Eddwi H.; Nugraha, Ahmad R. T.; Dresselhaus, Mildred S.; Saito, Riichiro

    2016-08-01

    Intensities of the first- and the second-order Raman spectra are calculated as a function of the Fermi energy. We show that the Kohn anomaly effect, i.e., phonon frequency renormalization, in the first-order Raman spectra originates from the phonon renormalization by the interband electron-hole excitation, whereas in the second-order Raman spectra, a competition between the interband and intraband electron-hole excitations takes place. By this calculation, we confirm the presence of different dispersive behaviors of the Raman peak frequency as a function of the Fermi energy for the first- and the second-order Raman spectra, as observed in some previous experiments. Moreover, the calculated results of the Raman intensity sensitively depend on the Fermi energy for both the first- and the second-order Raman spectra, indicating the presence of the quantum interference effect. The electron-phonon matrix element plays an important role in the intensity increase (decrease) of the combination (overtone) phonon modes as a function of the Fermi energy.

  20. Surface-enhanced Raman scattering spectra of TvNPV polyhedrin protein in Ag sol

    NASA Astrophysics Data System (ADS)

    Bao, PeiDi; Liu, XinMing; Huang, TianQuan; Wu, Tieqiao; Liu, Shiqui

    1999-04-01

    The surface-enhanced Raman Scattering (SERS) spectra of insect virus: the Polyhedrin Protein and Trabala Vishnou Nuclear Polyhedrosis Virus (TvNPV-PP) adsorbed on the surface of silver colloid particles and their Ordinary Raman Scattering (ORS) spectrum were investigated. The SERS spectra and the ORS spectrum of TvNPV-PP show their correlation. In ORS spectrum of TvNPV-PP. The intense amide I at 1656 nm-1, the medium-intense amide I 1673 cm-1 and a week amide III at 1280 cm-1 show that TvNPV-PP has predominantly (alpha) -helical and (beta) - sheet structure. In SERS spectra of TvNPV-PP the intense bands related to carboxylate groups vibrations suggest that TvNPV-PP are adsorbed on the silver colloid surface through the carboxylate groups. The bands of amide I and amide III could not be observed in SERS residues increased their distance from Ag surface and weaken the enhanced effect of the corresponding vibrations. Chemisorption is a main mechanism in the SERS spectra on silver hydrosols for TvNPV- PP and its mechanism of enhancement has a short-range character. The SERS enhancement factor is approximately 102.

  1. FT-IR, FT-Raman spectra and DFT calculations of melaminium perchlorate monohydrate

    NASA Astrophysics Data System (ADS)

    Kanagathara, N.; Marchewka, M. K.; Drozd, M.; Renganathan, N. G.; Gunasekaran, S.; Anbalagan, G.

    2013-08-01

    Melaminium perchlorate monohydrate (MPM), an organic material has been synthesized by slow solvent evaporation method at room temperature. Powder X-ray diffraction analysis confirms that MPM crystal belongs to triclinic system with space group P-1. FTIR and FT Raman spectra are recorded at room temperature. Functional group assignment has been made for the melaminium cations and perchlorate anions. Vibrational spectra have also been discussed on the basis of quantum chemical density functional theory (DFT) calculations using Firefly (PC GAMESS) version 7.1 G. Vibrational frequencies are calculated and scaled values are compared with experimental values. The assignment of the bands has been made on the basis of the calculated PED. The Mulliken charges, HOMO-LUMO orbital energies are analyzed directly from Firefly program log files and graphically illustrated. HOMO-LUMO energy gap and other related molecular properties are also calculated. The theoretically constructed FT-IR and FT-Raman spectra of MPM coincide with the experimental one. The chemical structure of the compound has been established by 1H and 13C NMR spectra. No detectable signal was observed during powder test for second harmonic generation.

  2. Discriminating model for diagnosis of basal cell carcinoma and melanoma in vitro based on the Raman spectra of selected biochemicals

    NASA Astrophysics Data System (ADS)

    Silveira, Landulfo; Silveira, Fabrício Luiz; Bodanese, Benito; Zângaro, Renato Amaro; Pacheco, Marcos Tadeu T.

    2012-07-01

    Raman spectroscopy has been employed to identify differences in the biochemical constitution of malignant [basal cell carcinoma (BCC) and melanoma (MEL)] cells compared to normal skin tissues, with the goal of skin cancer diagnosis. We collected Raman spectra from compounds such as proteins, lipids, and nucleic acids, which are expected to be represented in human skin spectra, and developed a linear least-squares fitting model to estimate the contributions of these compounds to the tissue spectra. We used a set of 145 spectra from biopsy fragments of normal (30 spectra), BCC (96 spectra), and MEL (19 spectra) skin tissues, collected using a near-infrared Raman spectrometer (830 nm, 50 to 200 mW, and 20 s exposure time) coupled to a Raman probe. We applied the best-fitting model to the spectra of biochemicals and tissues, hypothesizing that the relative spectral contribution of each compound to the tissue Raman spectrum changes according to the disease. We verified that actin, collagen, elastin, and triolein were the most important biochemicals representing the spectral features of skin tissues. A classification model applied to the relative contribution of collagen III, elastin, and melanin using Euclidean distance as a discriminator could differentiate normal from BCC and MEL.

  3. Infrared and Raman spectra, ab initio calculations and conformational studies of ethyl iodosilane

    NASA Astrophysics Data System (ADS)

    Aleksa, Valdemaras; Powell, David L.; Gruodis, Alytis; Hassler, Karl; Hummeltenberg, Reinhard; Herzog, Klaus; Salzer, Reiner; Klaeboe, Peter; Nielsen, Claus J.

    2003-01-01

    Ethyl iodosilane (CH 3CH 2-SiH 2I) was synthesized for the first time. Infrared spectra were recorded in the vapour, amorphous and crystalline solid phases in MIR and FIR regions. Additional MIR spectra of the compound isolated in argon and nitrogen matrices were obtained at 5 K. Raman spectra of the liquid, excited by argon and by Nd 3+ YAG lasers, were recorded at room temperature including polarization measurements. The spectra were studied in an extended temperature range 173-353 K and a Δ H value of 1.2±0.3 kJ mol -1 was obtained with gauche being the low energy conformer. Spectra of the amorphous and crystalline solids were obtained at liquid nitrogen temperature. Ethyl iodosilane exists in an equilibrium between anti and gauche conformers, in the vapour, liquid and amorphous states. After careful annealing the amorphous solid on a cold Cu finger (Raman) or on a CsI or Si window (infrared) to 160 K a partly crystalline solid was formed. A number of IR and Raman bands were reduced in intensity after annealing, although they did not vanish completely. From comparison between the observed and calculated vibrational modes it was apparent that the gauche conformer was present in the crystal. The sample was mixed with argon and nitrogen in a ratio 1:1000, deposited on a window at 5 or 10 K and annealed to temperatures between 5 and 36 K (argon) and 5-30 K (nitrogen). IR bands attributed to the anti and gauche conformers were reduced and increased in intensities, respectively. Thus, the gauche conformer was the low energy conformer in the matrices and probably also in the vapour phase. Ab initio calculations were performed at the RHF/3-21 G* and 6-311G* B3LYPs and gave optimized geometries, IR and Raman intensities and vibrational frequencies for the anti and gauche conformers. An enthalpy difference of 0.9 kJ mol -1 was obtained from the calculations with gauche being the low energy conformer. After scaling, a reasonably good agreement between the experimental

  4. Surface-enhanced Raman spectra of hemoglobin for esophageal cancer diagnosis

    NASA Astrophysics Data System (ADS)

    Zhou, Xue; Diao, Zhenqi; Fan, Chunzhen; Guo, Huiqiang; Xiong, Yang; Tang, Weiyue

    2014-03-01

    Surface-enhanced Raman scattering (SERS) spectra of hemoglobin from 30 esophageal cancer patients and 30 healthy persons have been detected and analyzed. The results indicate that, there are more iron ions in low spin state and less in high for the hemoglobin of esophageal cancer patients than normal persons, which is consistent with the fact that it is easier to hemolyze for the blood of cancer patients. By using principal component analysis (PCA) and discriminate analysis, we can get a three-dimensional scatter plot of PC scores from the SERS spectra of healthy persons and cancer patients, from which the two groups can be discriminated. The total accuracy of this method is 90%, while the diagnostic specificity is 93.3% and sensitivity is 86.7%. Thus SERS spectra of hemoglobin analysis combined with PCA may be a new technique for the early diagnose of esophageal cancer.

  5. Application of the adaptive subspace detector to Raman spectra for biological threat detection

    NASA Astrophysics Data System (ADS)

    Russell, Thomas A.; Borchardt, Steven; Anderson, Richard; Treado, Patrick; Neiss, Jason

    2006-10-01

    Effective application of point detectors in the field to monitor the air for biological attack imposes a challenging set of requirements on threat detection algorithms. Raman spectra exhibit features that discriminate between threats and non-threats, and such spectra can be collected quickly, offering a potential solution given the appropriate algorithm. The algorithm must attempt to match to known threat signatures, while suppressing the background clutter in order to produce acceptable Receiver Operating Characteristic (ROC) curves. The radar space-time adaptive processing (STAP) community offers a set of tools appropriate to this problem, and these have recently crossed over into hyperspectral imaging (HSI) applications. The Adaptive Subspace Detector (ASD) is the Generalized Likelihood Ratio Test (GLRT) detector for structured backgrounds (which we expect for Raman background spectra) and mixed pixels, and supports the necessary adaptation to varying background environments. The structured background model reduces the training required for that adaptation, and the number of statistical assumptions required. We applied the ASD to large Raman spectral databases collected by ChemImage, developed spectral libraries of threat signatures and several backgrounds, and tested the algorithm against individual and mixture spectra, including in blind tests. The algorithm was successful in detecting threats, however, in order to maintain the desired false alarm rate, it was necessary to shift the decision threshold so as to give up some detection sensitivity. This was due to excess spread of the detector histograms, apparently related to variability in the signatures not captured by the subspaces, and evidenced by non-Gaussian residuals. We present here performance modeling, test data, algorithm and sensor performance results, and model validation conclusions.

  6. Evidence of Polaron Excitations in Low Temperature Raman Spectra of Oxalic Acid Dihydrate.

    PubMed

    Mohaček-Grošev, Vlasta; Grdadolnik, Jože; Hadži, Dušan

    2016-05-12

    Low temperature Raman spectra of oxalic acid dihydrate (8-300 K) for both the polycrystalline and single crystal phase show strong variation with temperature in the interval from 1200 to 2000 cm(-1). Previous low temperature diffraction studies all confirmed the stability of the crystal P21/n phase with no indications of any phase transition, reporting the existence of a strong hydrogen bond between the oxalic acid and a water molecule. A new group of Raman bands in the 1200-1300 cm(-1) interval below 90 K is observed, caused by possible loss of the center of inversion. This in turn could originate either due to disorder in hydroxyl proton positions or due to proton transfer from carboxylic group to water molecule. The hypothesis of proton transfer is further supported by the emergence of new bands centered at 1600 and 1813 cm(-1), which can be explained with vibrations of H3O(+) ions. The broad band at 1600 cm(-1) looses intensity, while the band at 1813 cm(-1) gains intensity on cooling. The agreement between quantum calculations of vibrational spectra and experimentally observed Raman bands of hydronium ions in oxalic acid sesquihydrate crystal corroborates this hypothesis. PMID:27093217

  7. GeSi Raman spectra vs. local clustering/anticlustering: Percolation scheme and ab initio calculations

    NASA Astrophysics Data System (ADS)

    Pagès, O.; Hussein, R. Hajj; Torres, V. J. B.

    2013-07-01

    We formalize within the percolation scheme that operates along the linear chain approximation, i.e., at one dimension (1D), an intrinsic ability behind Raman scattering to achieve a quantitative insight into local clustering/anticlustering in an alloy, using GeSi as a case study. For doing so, we derive general expressions of the individual fractions of the six GeSi percolation-type oscillators [1×(Ge-Ge), 3×(Ge-Si), 2×(Si-Si)], which monitor directly the Raman intensities, via a relevant order parameter κ. This is introduced by adapting to the 1D oscillators of the GeSi-diamond version of the 1D-percolation scheme, i.e., along a fully consistent 1D treatment, the approach originally used by Verleur and Barker for the three-dimensional (3D) oscillators of their 1D-cluster scheme applying to zincblende alloys [H. W. Verleur and A. S. Barker, Phys. Rev. 149, 715 (1966)], a somehow problematic one in fact, due to its 3D-1D ambivalence. Predictive κ-dependent intensity-interplays between the Ge0.5Si0.5 Raman lines are confronted with existing experimental data and with ab initio Raman spectra obtained by using (32-atom) disordered supercells matching the required κ values, with special attention to the Ge-Si triplet and to the Si-Si doublet, respectively.

  8. Molecules-in-molecules fragment-based method for the evaluation of Raman spectra of large molecules

    NASA Astrophysics Data System (ADS)

    Jovan Jose, K. V.; Raghavachari, Krishnan

    2015-10-01

    We present the first implementation of the evaluation Raman spectra of large molecules using the molecules-in-molecules (MIM) fragment-based method (MIM-Raman). Molecular fragments and associated overlapping subsystems are constructed by cutting the C-C bonds in the large molecule based on the connectivity information and a number-based fragmentation scheme. After saturating the dangling bonds with hydrogen link-atoms, independent energy and Raman frequency calculations are performed on each subsystem. Subsequently, link-atom-related forces, Hessian and polarisability derivative matrix elements are projected back onto the corresponding host and supporting atoms through the Jacobian projection method. In the two-layer model (MIM2), the long-range interactions, absent in the single layer model (MIM1), are taken into account through a second layer at a lower level of theory. The MIM-Raman method is benchmarked on a set of large linear and cage molecules. The MIM extrapolated energy and Raman spectra are compared with the full calculations at B3LYP/6-311G(d,p) or B3LYP/6-311+G(d,p) levels of theory. The benchmark analysis of 21 molecules at MIM2 show an accuracy improvement of 85% in energies, 74% in Raman frequencies and 66% in intensities over MIM1. The implementation and benchmark analysis validates the MIM-Raman model for exploring Raman spectra of large molecules in the future.

  9. Calculation of the lattice dynamics and Raman spectra of copper zinc tin chalcogenides and comparison to experiments

    NASA Astrophysics Data System (ADS)

    Khare, Ankur; Himmetoglu, Burak; Johnson, Melissa; Norris, David J.; Cococcioni, Matteo; Aydil, Eray S.

    2012-04-01

    The electronic structure, lattice dynamics, and Raman spectra of the kesterite, stannite, and pre-mixed Cu-Au (PMCA) structures of Cu2ZnSnS4 (CZTS) and Cu2ZnSnSe4 (CZTSe) were calculated using density functional theory (DFT). Differences in longitudinal and transverse optical (LO-TO) splitting in kesterite, stannite, and PMCA structures can be used to differentiate them. The Γ-point phonon frequencies, which give rise to Raman scattering, exhibit small but measurable shifts, for these three structures. Experimentally measured Raman scattering from CZTS and CZTSe thin films were examined in light of DFT calculations and deconvoluted to explain subtle shifts and asymmetric line shapes often observed in CZTS and CZTSe Raman spectra. Raman spectroscopy in conjunction with ab initio calculations can be used to differentiate between kesterite, stannite, and PMCA structures of CZTS and CZTSe.

  10. Phase Transition in all-trans-β-Carotene Crystal: Temperature-Dependent Raman Spectra.

    PubMed

    da Silva, Kleber J R; Paschoal, Waldomiro; Belo, Ezequiel A; Moreira, Sanclayton G C

    2015-09-24

    In this study, we studied the stability of an all-trans-β-carotene single crystal using Raman spectroscopy with line excitation at 632.8 nm, in the temperature range 20–300 K. The Raman spectra exhibit clear modifications in the spectral range of the lattice and internal vibrational modes. The temperature dependence of the most intense vibrational modes ν1 (1511 cm(–1)) and ν2 (1156 cm(–1)) that are related to the C═C and C—C stretching vibrations of the polyene chain, respectively, shows an upward shift on the Raman modes. This behavior is similar to that stated in the theoretical work of Wei-Long Liu et al. We conclude that the all-trans-β-carotene crystal undergoes a temperature-induced phase transition at approximately 219 K. This transition is interpreted as a rotation experienced by β-ring groups at each end of the all-trans-β-carotene molecule around the dihedral angle. At low temperatures, the new molecular configuration affects the sliding plane of the space group C2h(5)(P2(1)/n), and the phase transition leads to an unchanged monoclinic structure; however, the original space group is possibly lowered to the space group C2. In the temperature range 200–220 K, the spectral ratio (S) of the integrated intensities of the spectral modes around the symmetric and asymmetric stretching wavenumbers of the methyl group (CH3) changes as a function of temperature in agreement with the phase transition. Furthermore, according to phase transition undergone by the all-trans-β-carotene, the thermal results obtained by differential scanning calorimetry show an exothermic process that occurs near the transition temperature assigned by the Raman spectra. PMID:26335691

  11. Phase Transition in all-trans-β-Carotene Crystal: Temperature-Dependent Raman Spectra.

    PubMed

    da Silva, Kleber J R; Paschoal, Waldomiro; Belo, Ezequiel A; Moreira, Sanclayton G C

    2015-09-24

    In this study, we studied the stability of an all-trans-β-carotene single crystal using Raman spectroscopy with line excitation at 632.8 nm, in the temperature range 20–300 K. The Raman spectra exhibit clear modifications in the spectral range of the lattice and internal vibrational modes. The temperature dependence of the most intense vibrational modes ν1 (1511 cm(–1)) and ν2 (1156 cm(–1)) that are related to the C═C and C—C stretching vibrations of the polyene chain, respectively, shows an upward shift on the Raman modes. This behavior is similar to that stated in the theoretical work of Wei-Long Liu et al. We conclude that the all-trans-β-carotene crystal undergoes a temperature-induced phase transition at approximately 219 K. This transition is interpreted as a rotation experienced by β-ring groups at each end of the all-trans-β-carotene molecule around the dihedral angle. At low temperatures, the new molecular configuration affects the sliding plane of the space group C2h(5)(P2(1)/n), and the phase transition leads to an unchanged monoclinic structure; however, the original space group is possibly lowered to the space group C2. In the temperature range 200–220 K, the spectral ratio (S) of the integrated intensities of the spectral modes around the symmetric and asymmetric stretching wavenumbers of the methyl group (CH3) changes as a function of temperature in agreement with the phase transition. Furthermore, according to phase transition undergone by the all-trans-β-carotene, the thermal results obtained by differential scanning calorimetry show an exothermic process that occurs near the transition temperature assigned by the Raman spectra.

  12. Raman spectra from symmetric hydrogen bonds in water by high-intensity laser-induced breakdown.

    PubMed

    Men, Zhiwei; Fang, Wenhui; Li, Dongfei; Li, Zhanlong; Sun, Chenglin

    2014-01-01

    Raman spectra of ice VII and X were investigated using strong plasma shockwave generated by laser-induced breakdown (LIB) in liquid water. Simultaneously, the occurrence of the hydrogen emission lines of 656 nm (Hα), 486 nm (Hβ), 434 nm (Hγ) and 410 nm (Hδ) was observed. At 5 × 10(12) W/cm(2) optical power density, the O-H symmetric stretching, translational and librational modes of ice VII and a single peak at 785 cm(-1) appeared in the spectra. The band was assigned to the Raman-active O-O mode of the monomolecular phase, which was the symmetric hydrogen bond of cuprite ice X. The spectra indicated that ice VII and X structure were formed, as the trajectory of the strong plasma shockwave passes through the stable Pressure-Temperature range of ice VII and X. The shockwave temperature and pressure were calculated by the Grüneisen model.

  13. Raman spectra from Symmetric Hydrogen Bonds in Water by High-intensity Laser-induced Breakdown

    PubMed Central

    Men, Zhiwei; Fang, Wenhui; Li, Dongfei; Li, Zhanlong; Sun, Chenglin

    2014-01-01

    Raman spectra of ice VII and X were investigated using strong plasma shockwave generated by laser-induced breakdown (LIB) in liquid water. Simultaneously, the occurrence of the hydrogen emission lines of 656 nm (Hα), 486 nm (Hβ), 434 nm (Hγ) and 410 nm (Hδ) was observed. At 5 × 1012 W/cm2 optical power density, the O-H symmetric stretching, translational and librational modes of ice VII and a single peak at 785 cm−1 appeared in the spectra. The band was assigned to the Raman-active O-O mode of the monomolecular phase, which was the symmetric hydrogen bond of cuprite ice X. The spectra indicated that ice VII and X structure were formed, as the trajectory of the strong plasma shockwave passes through the stable Pressure-Temperature range of ice VII and X. The shockwave temperature and pressure were calculated by the Grüneisen model. PMID:24709652

  14. Surface enhanced Raman scattering (SERS) spectra of trinitrotoluene in silver colloids prepared by microwave heating method.

    PubMed

    Zhang, Chunling; Wang, Kaijun; Han, Dejun; Pang, Qing

    2014-03-25

    Surface enhanced Raman spectroscopy (SERS) has been demonstrated for the detection of trace levels of explosives due to its high sensitivity, speed of detection and fingerprint feature. 2,4,6-Trinitrotoluene (TNT), a leading example of nitroaromatic explosives, is causing wide concern. In this study, SERS spectra of TNT solution in silver colloids have been successfully measured and a comparison was drawn with the normal Raman spectra of bulk TNT. The silver colloids were prepared by the microwave heating method and characterized by UV-Vis spectra and the scanning electron microscopy (SEM). NaCl and pH value have a great impact on SERS intensity of TNT, the corresponding experimental research results and theoretical interpretations were further illustrated to a certain extent. Moreover, the detection limit of TNT in aqueous solution was achieved as low as 10(-10) mol L(-1) and some preliminary experiments of detecting TNT vapor (about 10 μg/L) using SERS have been carried out. Our results demonstrated the potential of SERS for probing TNT with high sensitivity, and suggest SERS as a powerful method for detection of TNT and similar species at trace levels.

  15. Surface enhanced Raman scattering (SERS) spectra of trinitrotoluene in silver colloids prepared by microwave heating method

    NASA Astrophysics Data System (ADS)

    Zhang, Chunling; Wang, Kaijun; Han, Dejun; Pang, Qing

    2014-03-01

    Surface enhanced Raman spectroscopy (SERS) has been demonstrated for the detection of trace levels of explosives due to its high sensitivity, speed of detection and fingerprint feature. 2,4,6-Trinitrotoluene (TNT), a leading example of nitroaromatic explosives, is causing wide concern. In this study, SERS spectra of TNT solution in silver colloids have been successfully measured and a comparison was drawn with the normal Raman spectra of bulk TNT. The silver colloids were prepared by the microwave heating method and characterized by UV-Vis spectra and the scanning electron microscopy (SEM). NaCl and pH value have a great impact on SERS intensity of TNT, the corresponding experimental research results and theoretical interpretations were further illustrated to a certain extent. Moreover, the detection limit of TNT in aqueous solution was achieved as low as 10-10 mol L-1 and some preliminary experiments of detecting TNT vapor (about 10 μg/L) using SERS have been carried out. Our results demonstrated the potential of SERS for probing TNT with high sensitivity, and suggest SERS as a powerful method for detection of TNT and similar species at trace levels.

  16. 17O NMR and Raman spectra of water with different calcium salts

    NASA Astrophysics Data System (ADS)

    Yan, Ying; Ou, Xiao-xia; Zhang, Hui-ping

    2014-09-01

    17O NMR and Raman spectra of water with different calcium salts have been measured. Different water samples were prepared by adding nano-materials, calcium gluconate, calcium citrate and calcium chloride into distilled water. Both 17O NMR and Raman spectra of different water samples were recorded. The effects of temperature and time on 17O NMR line-width of different water samples were analyzed as well. The experimental results showed that Raman spectra of water with these four calcium salts were almost the same as those for distilled water when the temperature increased to 40 °C. The 17O NMR line-width of distilled water decreased from 76.8 Hz to 46.9 Hz and 65.8 Hz after nano-materials and calcium chloride were added, respectively. Besides, the 17O NMR line-width of distilled water increased from 76.8 Hz to 131.6 Hz after calcium citrate was added, while the 17O NMR line-width of distilled water increased from 76.8 Hz to 77.2 Hz after calcium gluconate was added. The 17O NMR line-width of water with calcium chloride increased while the other three water samples were nearly stable as the temperature increased from 30 °C to 85 °C. The 17O NMR line-width of water with nano-materials kept steady while the 17O NMR line-width of the other three water samples all increased in 42 days.

  17. Raman and photoluminescence spectra of two-dimensional nanocrystallites of monolayer WS2 and WSe2

    NASA Astrophysics Data System (ADS)

    Shi, Wei; Lin, Miao-Ling; Tan, Qing-Hai; Qiao, Xiao-Fen; Zhang, Jun; Tan, Ping-Heng

    2016-06-01

    Defects strongly modify optical properties in pristine and nanostructured two-dimensional (2D) materials. The ion implantation technique can be used to gradually introduce defects in semiconductor to obtain nanocrystallites (NCs) with different domain sizes. Here, we present a detailed study on the Raman and photoluminescence spectra of 2D NCs of monolayer WS2 (1L WS2) and 1L WSe2 prepared by ion implantation. With increasing ion dosages, both {{{E}}}\\prime and {{{A}}}1\\prime modes of 1L WS2 exhibit a downshift in frequency and an asymmetrical broadening toward lower frequency, while the {{{A}}}1\\prime mode in 1L WSe2 NCs exhibits an opposite behavior, showing asymmetrical broadening and peak shift toward higher frequency. This behavior is well understood by phonon quantum confinement of the out-of-plane optical branch whose frequency displays a minimum at Γ in pristine 1L WSe2. After the ion implantation, phonons from the Brillouin zone boundary are revealed in the Raman spectra, and the corresponding assignments are identified by resonant Raman spectra at low temperature. The defects can act as trapping centers of free carriers, which result in a sharp decrease of photoluminescence (PL) emission from A exciton with increasing ion dosage. The PL peak from A-exciton in both 1L WS2 and 1L WSe2 NCs blueshifts with increasing the ion dosage due to the quantum confinement effect of smaller NC size. The ion-implantation results in a new emission peak of defect-bound neutral excitons below the A-exciton peak in both 1L WS2 and 1L WSe2 NCs. Its relative intensity to the A exciton increases with increasing the ion dosage and finally vanishes along with the A exciton. These results offer a route toward tailoring the optical properties of 2D materials by controlling the size of 2D NCs.

  18. Mineralogical analyses of surface sediments in the Antarctic Dry Valleys: coordinated analyses of Raman spectra, reflectance spectra and elemental abundances.

    PubMed

    Bishop, Janice L; Englert, Peter A J; Patel, Shital; Tirsch, Daniela; Roy, Alex J; Koeberl, Christian; Böttger, Ute; Hanke, Franziska; Jaumann, Ralf

    2014-12-13

    Surface sediments at Lakes Fryxell, Vanda and Brownworth in the Antarctic Dry Valleys (ADV) were investigated as analogues for the cold, dry environment on Mars. Sediments were sampled from regions surrounding the lakes and from the ice cover on top of the lakes. The ADV sediments were studied using Raman spectra of individual grains and reflectance spectra of bulk particulate samples and compared with previous analyses of subsurface and lakebottom sediments. Elemental abundances were coordinated with the spectral data in order to assess trends in sediment alteration. The surface sediments in this study were compared with lakebottom sediments (Bishop JL et al. 2003 Int. J. Astrobiol. 2, 273-287 (doi:10.1017/S1473550403001654)) and samples from soil pits (Englert P et al. 2013 In European Planetary Science Congress, abstract no. 96; Englert P et al. 2014 In 45th Lunar and Planetary Science Conf., abstract no. 1707). Feldspar, quartz and pyroxene are common minerals found in all the sediments. Minor abundances of carbonate, chlorite, actinolite and allophane are also found in the surface sediments, and are similar to minerals found in greater abundance in the lakebottom sediments. Surface sediment formation is dominated by physical processes; a few centimetres below the surface chemical alteration sets in, whereas lakebottom sediments experience biomineralization. Characterizing the mineralogical variations in these samples provides insights into the alteration processes occurring in the ADV and supports understanding alteration in the cold and dry environment on Mars. PMID:25368345

  19. Mineralogical analyses of surface sediments in the Antarctic Dry Valleys: coordinated analyses of Raman spectra, reflectance spectra and elemental abundances.

    PubMed

    Bishop, Janice L; Englert, Peter A J; Patel, Shital; Tirsch, Daniela; Roy, Alex J; Koeberl, Christian; Böttger, Ute; Hanke, Franziska; Jaumann, Ralf

    2014-12-13

    Surface sediments at Lakes Fryxell, Vanda and Brownworth in the Antarctic Dry Valleys (ADV) were investigated as analogues for the cold, dry environment on Mars. Sediments were sampled from regions surrounding the lakes and from the ice cover on top of the lakes. The ADV sediments were studied using Raman spectra of individual grains and reflectance spectra of bulk particulate samples and compared with previous analyses of subsurface and lakebottom sediments. Elemental abundances were coordinated with the spectral data in order to assess trends in sediment alteration. The surface sediments in this study were compared with lakebottom sediments (Bishop JL et al. 2003 Int. J. Astrobiol. 2, 273-287 (doi:10.1017/S1473550403001654)) and samples from soil pits (Englert P et al. 2013 In European Planetary Science Congress, abstract no. 96; Englert P et al. 2014 In 45th Lunar and Planetary Science Conf., abstract no. 1707). Feldspar, quartz and pyroxene are common minerals found in all the sediments. Minor abundances of carbonate, chlorite, actinolite and allophane are also found in the surface sediments, and are similar to minerals found in greater abundance in the lakebottom sediments. Surface sediment formation is dominated by physical processes; a few centimetres below the surface chemical alteration sets in, whereas lakebottom sediments experience biomineralization. Characterizing the mineralogical variations in these samples provides insights into the alteration processes occurring in the ADV and supports understanding alteration in the cold and dry environment on Mars.

  20. Feature-based recognition of surface-enhanced Raman spectra for biological targets.

    PubMed

    Pavillon, Nicolas; Bando, Kazuki; Fujita, Katsumasa; Smith, Nicholas I

    2013-08-01

    We propose and compare multiple approaches to automatically process data measured through surface-enhanced Raman scattering (SERS), in the context of intracellular molecule probing. It relies on locally detecting the most relevant spectra to retrieve all data independently through indexing, thus avoiding any pre-filtering which occurs with standard processing methods. We first assess our approach on simulated data of the spectrum of Rhodamine 6G, and then validate high-performing methods on experimental measurements of this compound. The optimized method is then utilized to extract and classify the complex SERS response behavior of gold nanoparticles taken in live cells. PMID:23192987

  1. Raman spectra of aligned carbon micro-coils and their impedance characteristics under loads

    NASA Astrophysics Data System (ADS)

    Tao, Wang; Yabo, Zhu; Heliang, Fan; Zhicheng, Ju; Lei, Chen; Zhengyuan, Wang

    2014-02-01

    Scanning and transmission electron microscopy were used to characterize the morphology of the carbon microcoils (CMCs). The Raman spectra showed that CMCs had local regular structure as ID/IG = 0.841. Then, aligned CMCs/silicone-rubber composites (5 × 5 × 1 mm3) were fabricated by coating of silicone rubber on the CMCs. Their alternating current impedance characteristics were measured as a function of applied load and the pressure sensitivity was discussed. The results showed that the impedance decreased as the increasing applied load, and the sample with less CMCs owned high pressure sensitivity, which indicated a novel composite film could act as an alternative of tactile sensor.

  2. [First-principles study of vibrational Raman spectra of amorphous carbon].

    PubMed

    Niu, Li; Zhu, Jia-qi; Gao, Wei; Du, Shan-yi

    2009-09-01

    The vibrational density of states and nonresonant reduced Raman spectra of amorphous carbon at densities of 2.6, 2.9 and 3.2 g x cm(-3) were calculated by the use of a first-principles plane-wave pesudopotential method. Three structural models were generated by liquid-quench method using Car-Parinello molecular dynamics, their vibrational frequencies and eigenmodes were determined using the linear response approach, and Raman coupling tensors were calculated using the finite electric field method. The calculated results show that the sp3 fraction increases from 50% to 84.4%, the sp2 configuration changes from mainly rings to short chains, the position of the G peak moves to higher frequencies, the intensity ratio of D and G peaks decreases, the position of the T peak moves to lower frequencies and the intensity ratio of T and G peaks increases as density increases from 2.6 to 3.2 g x cm(-3). The authors' calculated Raman spectra show an overall good agreement with experimental spectra. The analysis in terms of atomic vibrations confirms that the G and D peaks both come from sp2 C contribution, G peak is due to the stretching vibration of any pair of sp2 atoms and the T peak is due to the C-C sp3 vibration. The authors' analysis also confirms that the dispersion of G and T peaks is due to bond-length changes. The bond length of chains (olefins) is shorter than that of rings, so their vibrational frequency is higher and the G-peak position moves to higher frequencies with increasing the sp3 fraction. The number of sp3-sp2 type bonds decreases as the sp3 fraction increases. These bonds are shorter than pure sp3-sp3 bonds, hence the T-peak position moves to lower frequencies. The research results provide a theoretic basis for analyzing experimental Raman spectra of amorphous carbon. PMID:19950647

  3. [First-principles study of vibrational Raman spectra of amorphous carbon].

    PubMed

    Niu, Li; Zhu, Jia-qi; Gao, Wei; Du, Shan-yi

    2009-09-01

    The vibrational density of states and nonresonant reduced Raman spectra of amorphous carbon at densities of 2.6, 2.9 and 3.2 g x cm(-3) were calculated by the use of a first-principles plane-wave pesudopotential method. Three structural models were generated by liquid-quench method using Car-Parinello molecular dynamics, their vibrational frequencies and eigenmodes were determined using the linear response approach, and Raman coupling tensors were calculated using the finite electric field method. The calculated results show that the sp3 fraction increases from 50% to 84.4%, the sp2 configuration changes from mainly rings to short chains, the position of the G peak moves to higher frequencies, the intensity ratio of D and G peaks decreases, the position of the T peak moves to lower frequencies and the intensity ratio of T and G peaks increases as density increases from 2.6 to 3.2 g x cm(-3). The authors' calculated Raman spectra show an overall good agreement with experimental spectra. The analysis in terms of atomic vibrations confirms that the G and D peaks both come from sp2 C contribution, G peak is due to the stretching vibration of any pair of sp2 atoms and the T peak is due to the C-C sp3 vibration. The authors' analysis also confirms that the dispersion of G and T peaks is due to bond-length changes. The bond length of chains (olefins) is shorter than that of rings, so their vibrational frequency is higher and the G-peak position moves to higher frequencies with increasing the sp3 fraction. The number of sp3-sp2 type bonds decreases as the sp3 fraction increases. These bonds are shorter than pure sp3-sp3 bonds, hence the T-peak position moves to lower frequencies. The research results provide a theoretic basis for analyzing experimental Raman spectra of amorphous carbon.

  4. IR and polarized Raman spectra of (NH 3) 2(CH 2) 2HPO 4

    NASA Astrophysics Data System (ADS)

    Philip, Daizy; Aruldhas, G.

    1989-11-01

    The IR and polarized Raman spectra of (NH 3) 2(CH 2) 2HPO 4 have been recorded and analyzed. In the crystal, symmetry of the HPO 4 ion is found to be reduced from C3 v to C1. The observed splittings indicate that the site symmetry and the correlation field effects are appreciable in the crystal. Strong vibrational coupling between the PO(H) stretching and POH out-of-plane bending modes is observed. Ethylene diammonium groups are crystallographically different in the unit cell.

  5. Polarised IR and Raman spectra of non-centrosymmetric Na3Li(SeO4)2.6H2O crystal--a new Raman laser material.

    PubMed

    Hanuza, J; Maczka, M; Lorenc, J; Kaminskii, A A; Bohaty, L; Becker, P

    2008-11-01

    Polarised IR and Raman spectra of Na3Li(SeO4)2.6H2O single crystal have been recorded. Discussion of the results has been based on the factor group approach for the trigonal R3c (C3v6) space group with Z = 2. The obtained results for the spontaneous Raman scattering have been used in the discussion of the stimulated Raman spectra of the material studied--a new Raman laser crystal.

  6. Raman Optical Activity Spectra for Large Molecules through Molecules-in-Molecules Fragment-Based Approach.

    PubMed

    Jovan Jose, K V; Raghavachari, Krishnan

    2016-02-01

    We present an efficient method for the calculation of the Raman optical activity (ROA) spectra for large molecules through the molecules-in-molecules (MIM) fragment-based method. The relevant higher energy derivatives from smaller fragments are used to build the property tensors of the parent molecule to enable the extension of the MIM method for evaluating ROA spectra (MIM-ROA). Two factors were found to be particularly important in yielding accurate results. First, the link-atom tensor components are projected back onto the corresponding host and supporting atoms through the Jacobian projection method, yielding a mathematically rigorous method. Second, the long-range interactions between fragments are taken into account by using a less computationally expensive lower level of theory. The performance of the MIM-ROA model is calibrated on the enantiomeric pairs of 10 carbohydrate benchmark molecules, with strong intramolecular interactions. The vibrational frequencies and ROA intensities are accurately reproduced relative to the full, unfragmented, results for these systems. In addition, the MIM-ROA method is employed to predict the ROA spectra of d-maltose, α-D-cyclodextrin, and cryptophane-A, yielding spectra in excellent agreement with experiment. The accuracy and performance of the benchmark systems validate the MIM-ROA model for exploring ROA spectra of large molecules.

  7. Using Separable Nonnegative Matrix Factorization Techniques for the Analysis of Time-Resolved Raman Spectra.

    PubMed

    Luce, Robert; Hildebrandt, Peter; Kuhlmann, Uwe; Liesen, Jörg

    2016-09-01

    The key challenge of time-resolved Raman spectroscopy is the identification of the constituent species and the analysis of the kinetics of the underlying reaction network. In this work we present an integral approach that allows for determining both the component spectra and the rate constants simultaneously from a series of vibrational spectra. It is based on an algorithm for nonnegative matrix factorization that is applied to the experimental data set following a few pre-processing steps. As a prerequisite for physically unambiguous solutions, each component spectrum must include one vibrational band that does not significantly interfere with the vibrational bands of other species. The approach is applied to synthetic "experimental" spectra derived from model systems comprising a set of species with component spectra differing with respect to their degree of spectral interferences and signal-to-noise ratios. In each case, the species involved are connected via monomolecular reaction pathways. The potential and limitations of the approach for recovering the respective rate constants and component spectra are discussed. PMID:27635022

  8. Raman spectra of gases. XVI - Torsional transitions in ethanol and ethanethiol

    NASA Technical Reports Server (NTRS)

    Durig, J. R.; Bucy, W. E.; Wurrey, C. J.; Carreira, L. A.

    1975-01-01

    The Raman spectra of gaseous ethanol and ethanethiol have been investigated. Thiol torsional fundamentals for the gauche conformer of EtSH and EtSD have been observed and the asymmetric potential function for this vibration has been calculated. Methyl torsional transitions and overtones have also been observed for both of these molecules. Barriers to internal rotation for the methyl top are calculated to be 3.77 and 3.84 kcal/mol for the EtSH and EtSD compounds, respectively. Hydroxyl torsional fundamentals were observed at 207 and 170 per cm in the EtOH and EtOD spectra, respectively. Overtones of the methyl torsion in both molecules yield a barrier to internal rotation of 3.62 kcal/mol for the gauche conformer.

  9. FT-IR and FT-Raman spectra of cimetidine and its metallocomplexes

    NASA Astrophysics Data System (ADS)

    Barańska, M.; Proniewicz, L. M.

    1999-11-01

    We present vibrational spectra of three stable, well-reproducible, polymorphic forms of cimetidine ( cim), a drug which is a powerful histamine H 2-receptor antagonist used in the treatment of peptic ulcer and the Zollinger-Ellison syndrome. Assignments of Raman and IR bands are made using semiempirical methods: MNDO, AM1 and PM3. We also describe the synthesis of Me( cim) 2(ClO 4) 2, where Me=Cu(II), Cd(II), Co(II) and Ni(II), and present their vibrational data. We show that the obtained complexes are isostructural, however a metal ion that occupies a center of octahedral unit introduces some distortions that can be seen in the spectra. We also make tentative assignment of metal-ligand stretching modes observed in low frequency range.

  10. [Study of biological molecules in water by using the resonance raman spectra in liquid-core optical fiber].

    PubMed

    Jia, Li-Hua; Wang, Yi-Ding; Sun, Cheng-Lin; Li, Zhan-Long; Li, Zuo-Wei; Wang, Li-Jun

    2009-10-01

    Raman spectrum is an important and effective method for the study of biological molecules in water. Measuring the Raman spectra for biological molecules in water, however, is very difficult because of the small Raman scattering cross section and the high electronic excitation energy of water molecules. In the present paper, the authors applied both technologies of liquid-core optical fiber and the resonance Raman spectra, then the intensity of Raman spectra was enhanced to a great extent. In this experiment, we chose the laser wavelength 514.5 of Ar+ ion laser as excitation laser, because we could obtain the maximal intensity of resonance Raman spectra at this wavelength. The experiment results show that, for the trace inspecting study of beta-carotene biological molecules in water, the concentration in the range of 10(-7)-10(-9) mol x L(-1) can be detected by quartz liquid-core optical fiber and the concentration in the range of 10(-9)-10(-10) mol x L(-1) by Teflon liquid-core optical fiber. The detecting utmost will be further reduced if improving the quality of optical fiber. PMID:20038038

  11. Real-space pseudopotential study of vibrational properties and Raman spectra in Si-Ge core-shell nanocrystals.

    PubMed

    Bobbitt, N Scott; Chelikowsky, James R

    2016-03-28

    We examine the vibrational properties and Raman spectra of Si-Ge core-shell nanostructures using real-space pseudopotentials constructed within density functional theory. Our method uses no empirical parameters, unlike many popular methods for predicting Raman spectra for nanocrystals. We find the dominant features of the Raman spectrum for the Si-Ge core-shell structure to be a superposition of the Raman spectra of the Ge and Si nanocrystals with optical peaks around 300 and 500 cm(-1), respectively. We also find a Si-Ge "interface" peak at 400 cm(-1). The Ge shell causes the Si core to expand from the equilibrium structure. This strain induces significant redshift in the Si contribution to the vibrational and Raman spectra, while the Ge shell is largely unstrained and does not exhibit this shift. We find that the ratio of peak heights is strongly related to the relative size of the core and shell regions. This finding suggests that Raman spectroscopy may be used to characterize the size of the core and shell in these structures. PMID:27036430

  12. Multivariate analysis of Raman spectra for in vitro non-invasive studies of living cells

    NASA Astrophysics Data System (ADS)

    Notingher, Ioan; Jell, Gavin; Notingher, Petronela L.; Bisson, Isabelle; Tsigkou, Olga; Polak, Julia M.; Stevens, Molly M.; Hench, Larry L.

    2005-06-01

    Understanding the biochemical and biophysical properties of live cells is fundamental for unravelling the secrets of many diseases and developing new therapies. Raman micro-spectroscopy is a powerful non-invasive technique that allows in vitro studies of individual living cells or groups of cells without the use of any labels or contrast enhancing chemicals. We describe the use of various multivariate statistical methods, such as Principal Component Analysis (PCA), Linear Discriminant Analysis (LDA) and Classical Least Square (CLS) fitting, to extract biochemical information related to various cellular events. Such methods are required because of the high complexity of the Raman spectra obtained from living cells. PCA and LDA are used to discriminate between healthy and tumor cells. A leave-one-out cross-validation method indicated high prediction accuracy (95%) in identification of tumorogenic bone cells. The CLS fitting method using commercially available biopolymers makes it possible to monitor biochemical changes during the differentiation of embryonic stem cells and foetal bone cells. The results suggest that in both cases differentiated cells are characterised by lower concentrations of RNA compared to undifferentiated cells. These studies suggest that Raman micro-spectroscopy could become an invaluable tool for in vitro cellular biochemistry studies.

  13. Quantum-mechanical calculation of the intensity distribution in resonance Raman scattering spectra of isolated skatole and skatole-water complex

    NASA Astrophysics Data System (ADS)

    Burova, T. G.; Nurlygayanova, M. H.; Ten, G. N.; Yakovleva, A. A.

    2013-03-01

    The relative intensities of lines in resonance Raman scattering spectra of isolated skatole and skatole-water complex have been calculated quantum mechanically. The influence of the intermolecular interaction on these spectra has been considered. Particular features of the intensity distribution in the resonance Raman scattering spectra of indole and skatole have been compared.

  14. Polarized Raman spectra of oriented fibers of A DNA and B DNA: anisotropic and isotropic local Raman tensors of base and backbone vibrations.

    PubMed Central

    Thomas, G J; Benevides, J M; Overman, S A; Ueda, T; Ushizawa, K; Saitoh, M; Tsuboi, M

    1995-01-01

    Polarized Raman spectra of oriented fibers of calf thymus DNA in the A and B conformations have been obtained by use of a Raman microscope operating in the 180 degrees back-scattering geometry. The following polarized Raman intensities in the spectral interval 200-1800 cm-1 were measured with both 514.5 and 488.0 nm laser excitations: (1) Icc, in which the incident and scattered light are polarized parallel to the DNA helical axis (c axis); (2) Ibb, in which the incident and scattered light are polarized perpendicular to c; and (3) Ibc and Icb, in which the incident and scattered light are polarized in mutually perpendicular directions. High degrees of structural homogeneity and unidirectional orientation were confirmed for both the A and B form fibers, as judged by comparison of the observed Raman markers and intensity anisotropies with measurements reported previously for oligonucleotide single crystals of known three-dimensional structures. The fiber Raman anisotropies have been combined with solution Raman depolarization ratios to evaluate the local tensors corresponding to key conformation-sensitive Raman bands of the DNA bases and sugar-phosphate backbone. The present study yields novel vibrational assignments for both A DNA and BDNA conformers and also confirms many previously proposed Raman vibrational assignments. Among the significant new findings are the demonstration of complex patterns of A form and B form indicator bands in the spectral intervals 750-900 and 1050-1100 cm-1, the identification of highly anisotropic tensors corresponding to vibrations of base, deoxyribose, and phosphate moieties, and the determination of relatively isotropic Raman tensors for the symmetrical stretching mode of phosphodioxy groups in A and B DNA. The present fiber results provide a basis for exploitation of polarized Raman spectroscopy to determine DNA helix orientation as well as to probe specific nucleotide residue orientations in nucleoproteins, viruses, and other

  15. Lidar-measured atmospheric N₂ vibrational-rotational Raman spectra and consequent temperature retrieval.

    PubMed

    Liu, Fuchao; Yi, Fan

    2014-11-17

    We have built a spectrally resolved Raman lidar to measure atmospheric N₂ Stokes vibrational-rotational Raman spectra. The lidar applies a double-grating polychromator with a reciprocal linear dispersion of ~0.12 nm mm(-1) for the wavelength separation and a 32-channel linear-array photomultiplier tube for sampling the spectral signals. The lidar can together measure the individual S- and O-branch line signals from J = 0 (2) through 14 (16). A comparison shows an excellent agreement between the lidar-measured and theoretically-calculated spectra. Based on the signal ratio of two individual lines (e.g., S-branch J = 6 and 12), the atmospheric temperature profiles are derived without requiring a calibration from another reference temperature. In terms of the envelope shape of an even-J section of the measured S-branch lines, we have also developed a new temperature retrieval approach without needing a calibration from reference temperature data. Both the approaches can give rise to reasonable temperature profiles comparable to that from local radiosonde.

  16. Spectra and structure of gallium compounds. II. Microwave, infrared, and Raman spectra, structure, and vibrational assignment of trimethylaminegallane

    NASA Astrophysics Data System (ADS)

    Durig, J. R.; Chatterjee, K. K.; Li, Y. S.; Jalilian, M.; Zozulin, A. J.; Odom, J. D.

    1980-07-01

    The microwave spectra of (CH3)3 14N 69GaH3, (CH3)3 14N 71GaH3, (CH3)3 15N 69GaH3, (CH3)3 15N 71GaH3, (CH3)3 14N 69GaD3 and (CH3)3 14N 71GaD3 were recorded from 26.5 to 40.0 GHz resulting in the first gas phase structural determination for a gallane adduct. An rs distance of 2.111±0.002 Å was obtained for the Ga-N bond. With reasonable assumptions for the structural parameters for the methyl moiety and the Ga-H distance the following molecular parameters were determined: r(N-C)=1.47 Å, uGaNC=110.0°, and uNGaH=102.0°. The barrier to internal rotation of the GaD3 moiety was calculated from the relative intensity of the vibrational satellites to be 1.2 kcal/mole. The infrared (200-4000 cm-1) and Raman spectra (50-3500 cm-1) of (CH3)3 NGaH3, (CH3)3 NGaD3, and (CH3)3 15NGaH3 have been recorded for the solid state at low temperature. The spectra have been interpreted in detail on the basis of C3v molecular symmetry. The splitting of the degenerate E modes in the spectra of the solids indicates that the previously determined crystal structure where the hydrogen positions were not determined is not correct for the complete molecule. A normal coordinate calculation has been carried out by utilizing a modified valence force field to calculate the frequencies and the potential energy distribution. The Ga-N stretch was found to be extensively mixed with the NC3 symmetric deformation for the (CH3)3 NGaH3 and for the d3 molecule additional mixing was found with the GaD3 symmetric deformation. The Ga-N force constant was found to have a value of 2.44 mdyn/Å which is considerably larger than the value of the Ga-P force constant (2.0 mdyn/Å) in (CH3)3 PGaH3. These results are compared to similar quantities in several corresponding Group IIIA-VA compounds.

  17. Multivariate statistical analysis of Raman spectra to distinguish normal, tumor, lymph nodes and mastitis in mouse mammary tissues

    NASA Astrophysics Data System (ADS)

    Dai, H.; Thakur, J. S.; Serhatkulu, G. K.; Pandya, A. K.; Auner, G. W.; Naik, R.; Freeman, D. C.; Naik, V. M.; Cao, A.; Klein, M. D.; Rabah, R.

    2006-03-01

    Raman spectra ( > 680) of normal mammary gland, malignant mammary gland tumors, and lymph node tissues from mice injected with 4T1 tumor cells have been recorded using 785 nm excitation laser. The state of the tissues was confirmed by standard pathological tests. The multivariate statistical analysis methods (principle component analysis and discriminant functional analysis) have been used to categorize the Raman spectra. The statistical algorithms based on the Raman spectral peak heights, clearly separated tissues into six distinct classes, including mastitis, which is clearly separated from normal and tumor. This study suggests that the Raman spectroscopy can possibly perform a real-time analysis of the human mammary tissues for the detection of cancer.

  18. Characterizing variability in in vivo Raman spectra of different anatomical locations in the upper gastrointestinal tract toward cancer detection

    NASA Astrophysics Data System (ADS)

    Bergholt, Mads Sylvest; Zheng, Wei; Lin, Kan; Ho, Khek Yu; Teh, Ming; Yeoh, Khay Guan; So, Jimmy Bok Yan; Huang, Zhiwei

    2011-03-01

    Raman spectroscopy is an optical vibrational technology capable of probing biomolecular changes of tissue associated with cancer transformation. This study aimed to characterize in vivo Raman spectroscopic properties of tissues belonging to different anatomical regions in the upper gastrointestinal (GI) tract and explore the implications for early detection of neoplastic lesions during clinical gastroscopy. A novel fiber-optic Raman endoscopy technique was utilized for real-time in vivo tissue Raman measurements of normal esophageal (distal, middle, and proximal), gastric (antrum, body, and cardia) as well as cancerous esophagous and gastric tissues from 107 patients who underwent endoscopic examinations. The non-negativity-constrained least squares minimization coupled with a reference database of Raman active biochemicals (i.e., actin, histones, collagen, DNA, and triolein) was employed for semiquantitative biomolecular modeling of tissue constituents in the upper GI. A total of 1189 in vivo Raman spectra were acquired from different locations in the upper GI. The Raman spectra among the distal, middle, and proximal sites of the esophagus showed no significant interanatomical variability. The interanatomical variability of Raman spectra among normal gastric tissue (antrum, body, and cardia) was subtle compared to cancerous tissue transformation, whereas biomolecular modeling revealed significant differences between the two organs, particularly in the gastroesophageal junction associated with proteins, DNA, and lipids. Cancerous tissues can be identified across interanatomical regions with accuracies of 89.3% [sensitivity of 92.6% (162/175) specificity of 88.6% (665/751)], and of 94.7% [sensitivity of 90.9% (30/33) specificity of 93.9% (216/230)] in the gastric and esophagus, respectively, using partial least squares-discriminant analysis together with the leave-one tissue site-out, cross validation. This work demonstrates that Raman endoscopy technique has

  19. Absorption, fluorescence, and Raman spectra of mass-selected rhenium dimers in argon matrices

    NASA Astrophysics Data System (ADS)

    Hu, Zhendong; Dong, Jian-Guo; Lombardi, John R.; Lindsay, D. M.; Harbich, W.

    1994-07-01

    We report absorption, laser fluorescence, and Raman spectra for Re2 in an argon matrix prepared by the mass-selected ion deposition technique. The dirhenium absorption spectrum consists of seven band systems (A-G) extending from the near infrared into the ultraviolet region. For the A system (a simple vibrational progression), we find T0=10 817(1) cm-1, ωe=317.1(5) cm-1 and ωexe=1.0(1) cm-1. A Franck-Condon analysis of the A system intensities predicts that this state has a smaller equilibrium internuclear distance than the ground state (Δre=-0.073 Å), in violation of Badger's rule. The B system starts at 13 250 cm-1 and consists of four overlapping (and possibly perturbed) subsystems, whose average vibrational spacing is 270(11) cm-1. The C, D, E, and F systems (vibrational spacings in parentheses) are centered at 22 300 cm-1 (210 cm-1), 24 500 cm-1 (195 cm-1), 29 150 cm-1 (175 cm-1), and 32 900 cm-1 (160 cm-1), respectively. Weak fluorescence spectra, obtained upon laser excitation into the A system, were characterized by vibrational progressions to the dimer ground (X) state and to a low lying (X') state for which T0=357.6(5) cm-1 and ωe=332.3(2) cm-1. Raman and fluorescence progressions to the ground state were observed when the B system was excited. These data give ωe=337.9(49) cm-1 for the dimer ground state in good agreement with measurements from photodetachment spectra [J. Am. Chem. Soc. 108, 178 (1986)]. We propose likely assignments for the low lying electronic states of Re2 and discuss our results in terms of the bonding in the other group VIIB dimers, Mn2 and Tc2.

  20. Coherent Raman spectra of the ν1 mode of 10BF 3 and 11BF 3

    NASA Astrophysics Data System (ADS)

    Kirkpatrick, Robynne; Masiello, Tony; Weber, Alfons; Nibler, Joseph W.

    2006-05-01

    High resolution (0.001 cm -1) coherent anti-Stokes Raman spectroscopy (CARS) was used to directly examine the ν1 symmetric stretching mode of the planar symmetric D3 h molecules 10BF 3 and 11BF 3. Simulations of the spectra were done using ν1 rovibrational parameters deduced from published infrared hot-band and difference-band studies and the close similarity to the observed CARS spectra confirms the validity of the infrared constants. No significant perturbations by Fermi resonance or Coriolis interactions with nearby states are observed, in marked contrast to the case of sulfur trioxide, a similar D3 h molecule recently studied. In the harmonic approximation, the 10BF 3 and 11BF 3ν1 Q-branches would be identical since the isotopic substitution is at the center of mass but, interestingly, the ν1 stretching frequency for 11BF 3 is found to be 0.198 cm -1higher than for the lighter 10BF 3 isotopomer. This counterintuitive result is reproduced almost exactly (0.200 cm -1) by ab initio calculations (B3LYP/cc-pVTZ) that included evaluation of cubic and quartic force constants and xij anharmonicity constants. The ab initio computations also predict to within 1% the Δ B, Δ C changes in the rotational constants in going from the ground state to the v1 = 1 vibrational level. The results illustrate nicely the complementary interplay of modern infrared, Raman, and ab initio methods in obtaining and analyzing rovibrational spectra.

  1. Predicting Raman Spectra of Aqueous Silica and Alumina Species in Solution From First Principles

    NASA Astrophysics Data System (ADS)

    Hunt, J. D.; Schauble, E. A.; Manning, C. E.

    2006-12-01

    Dissolved silica and alumina play an important role in lithospheric fluid chemistry. Silica concentrations in aqueous fluids vary over the range of crustal temperatures and pressures enough to allow for significant mass transport of silica via fluid-rock interaction. The polymerization of silica, and the possible incorporation of alumina into the polymer structure, could afford crystal-like or melt-like sites to otherwise insoluble elements such as titanium, leading to enhanced mobility. Raman spectroscopy in a hydrothermal diamond anvil cell (HDAC) has been used to study silica polymerization at elevated pressure and temperature [Ref. 1, 2], but Raman spectra of expected solutes are not fully understood. We calculated Raman spectra of H4SiO4 monomers, H6Si2O7 dimers, and H6SiAlO_7^- dimers, from first principles using hybrid density functional theory (B3LYP). These spectra take into account the variation in bridging angle (Si-O-Si and Si-O-Al angles) that the dimers will have at a given temperature by calculating a potential energy surface of the dimer as the bridging angle varies, and using a Boltzmann distribution at that temperature to determine relative populations at each geometry. Solution effects can be incorporated by using a polarizable continuum model (PCM), and a potential energy surface has been constructed for the silica dimer using a PCM. The bridging angle variation explains the broadness of the 630 cm^-^1 silica dimer peak observed in HDAC experiments [Ref. 1, 2] at high temperatures. The silica-alumina dimer bridging angle is shown to be stiffer than the silica dimer bridging angle, which results in a much narrower main peak. The synthetic spectrum obtained for the silica-alumina dimer suggests that there may be a higher ratio of complexed alumina to free alumina in solution at highly basic pH than previously estimated [Ref. 3]. References: 1. Zotov, N. and H. Keppler, Chemical Geology, 2002. 184: p. 71-82. 2. Zotov, N. and H. Keppler, American

  2. Sorting of Single Biomolecules based on Fourier Polar Representation of Surface Enhanced Raman Spectra

    NASA Astrophysics Data System (ADS)

    Leray, Aymeric; Brulé, Thibault; Buret, Mickael; Colas Des Francs, Gérard; Bouhelier, Alexandre; Dereux, Alain; Finot, Eric

    2016-02-01

    Surface enhanced Raman scattering (SERS) spectroscopy becomes increasingly used in biosensors for its capacity to detect and identify single molecules. In practice, a large number of SERS spectra are acquired and reliable ranking methods are thus essential for analysing all these data. Supervised classification strategies, which are the most effective methods, are usually applied but they require pre-determined models or classes. In this work, we propose to sort SERS spectra in unknown groups with an alternative strategy called Fourier polar representation. This non-fitting method based on simple Fourier sine and cosine transforms produces a fast and graphical representation for sorting SERS spectra with quantitative information. The reliability of this method was first investigated theoretically and numerically. Then, its performances were tested on two concrete biological examples: first with single amino-acid molecule (cysteine) and then with a mixture of three distinct odorous molecules. The benefits of this Fourier polar representation were highlighted and compared to the well-established statistical principal component analysis method.

  3. Sorting of Single Biomolecules based on Fourier Polar Representation of Surface Enhanced Raman Spectra

    PubMed Central

    Leray, Aymeric; Brulé, Thibault; Buret, Mickael; Colas des Francs, Gérard; Bouhelier, Alexandre; Dereux, Alain; Finot, Eric

    2016-01-01

    Surface enhanced Raman scattering (SERS) spectroscopy becomes increasingly used in biosensors for its capacity to detect and identify single molecules. In practice, a large number of SERS spectra are acquired and reliable ranking methods are thus essential for analysing all these data. Supervised classification strategies, which are the most effective methods, are usually applied but they require pre-determined models or classes. In this work, we propose to sort SERS spectra in unknown groups with an alternative strategy called Fourier polar representation. This non-fitting method based on simple Fourier sine and cosine transforms produces a fast and graphical representation for sorting SERS spectra with quantitative information. The reliability of this method was first investigated theoretically and numerically. Then, its performances were tested on two concrete biological examples: first with single amino-acid molecule (cysteine) and then with a mixture of three distinct odorous molecules. The benefits of this Fourier polar representation were highlighted and compared to the well-established statistical principal component analysis method. PMID:26833130

  4. Mechanistic studies on cyclohexanone oxygenase.

    PubMed

    Ryerson, C C; Ballou, D P; Walsh, C

    1982-05-25

    The bacterial flavoprotein monooxygenase carries out an oxygen insertion reaction on cyclohexanone, with ring expansion to form the seven-membered cyclic product epsilon-caprolactone, a transformation quite distinct from the phenol leads to catechol transformation carried out by the bacterial flavoprotein aromatic hydroxylases. Cyclohexanone oxygenase catalysis involves the four-electron of O2 at the expense of a two-electron oxidation of NADPH, concomitant with a two-electron oxidation of cyclohexanone to epsilon-caprolactone. NADPH oxidase activity is fully coupled with oxygen transfer to substrate. Steady-state kinetic assays demonstrate a ter-ter mechanism for this enzyme. Pre-steady-state kinetic assays demonstrate the participation of a 4a-hydroperoxyflavin intermediate during catalysis. In addition to its ketolactonizing activity, cyclohexanone oxygenase carries out S-oxygenation of thiane to thiane 1-oxide, a reaction which represents a nucleophilic displacement by the sulfur upon the terminal oxygen of the hydroperoxide. This is in contrast to cyclohexanone oxygenations where the flavin hydroperoxide acts as a nucleophile. In addition, a stable apoenzyme form is accessible and can be reconstituted with various FAD analogues with up to 100% recovery of enzyme activity. The accumulated results presented here support a Baeyer-Villiger rearrangement mechanism for the enzymatic oxygenation of cyclohexanone.

  5. Wavelet data processing of micro-Raman spectra of biological samples

    NASA Astrophysics Data System (ADS)

    Camerlingo, C.; Zenone, F.; Gaeta, G. M.; Riccio, R.; Lepore, M.

    2006-02-01

    A wavelet multi-component decomposition algorithm is proposed for processing data from micro-Raman spectroscopy (μ-RS) of biological tissue. The μ-RS has been recently recognized as a promising tool for the biopsy test and in vivo diagnosis of degenerative human tissue pathologies, due to the high chemical and structural information contents of this spectroscopic technique. However, measurements of biological tissues are usually hampered by typically low-level signals and by the presence of noise and background components caused by light diffusion or fluorescence processes. In order to overcome these problems, a numerical method based on discrete wavelet transform is used for the analysis of data from μ-RS measurements performed in vitro on animal (pig and chicken) tissue samples and, in a preliminary form, on human skin and oral tissue biopsy from normal subjects. Visible light μ-RS was performed using a He-Ne laser and a monochromator with a liquid nitrogen cooled charge coupled device equipped with a grating of 1800 grooves mm-1. The validity of the proposed data procedure has been tested on the well-characterized Raman spectra of reference acetylsalicylic acid samples.

  6. Size effects on Raman spectra of small CdSe nanoparticles in polymer films

    NASA Astrophysics Data System (ADS)

    Dzhagan, V. M.; Valakh, M. Ya; Raevskaya, A. E.; Stroyuk, A. L.; Kuchmiy, S. Ya; Zahn, D. R. T.

    2008-07-01

    The results of a resonant Raman scattering (RRS) study of polymer-stabilized colloidal CdSe nanoparticles (NPs) are reported. The size-selective nature of the RRS is demonstrated by analysing the NP ensembles with different average size \\bar {d} and size distribution Δd using a set of excitation wavelengths. The effect of size selection on the estimation of \\bar {d} and Δd values from the RRS spectra is discussed, as well as some peculiarities of RRS on surface optical phonons. From the experimentally observed small variation of the I2LO/ILO ratio for 2-5 nm NPs a minor effect of \\bar {d} on the electron-phonon coupling strength in this \\bar {d} range is supposed.

  7. FT-Raman and FTIR spectra, DFT investigation of the structure and vibrational assignment of mefenacet

    NASA Astrophysics Data System (ADS)

    Clemy Monicka, J.; James, C.

    2015-09-01

    FTIR and Raman spectral techniques were employed for the vibrational characterization of the herbicide mefenacet. The equilibrium geometry, various bonding features and harmonic vibrational wavenumbers were investigated with the help of density functional theory calculations. A detailed assignment of the vibrational spectra was made with the aid of theoretically predicted vibrational frequencies. Natural bond orbital analysis on mefenacet was carried out to reveal the nature of different interactions responsible for electron delocalization and the charge transfer between the orbitals (n → π∗, n → σ∗, π → π∗). Structural changes in the molecule due to the substitution of highly electronegative oxygen atom, conjugation and resonance effect were analyzed.

  8. Raman spectra of aligned carbon micro-coils and their impedance characteristics under loads

    SciTech Connect

    Tao, Wang; Yabo, Zhu Heliang, Fan; Zhicheng, Ju; Lei, Chen; Zhengyuan, Wang

    2014-02-21

    Scanning and transmission electron microscopy were used to characterize the morphology of the carbon microcoils (CMCs). The Raman spectra showed that CMCs had local regular structure as I{sub D}/I{sub G} = 0.841. Then, aligned CMCs/silicone–rubber composites (5 × 5 × 1 mm{sup 3}) were fabricated by coating of silicone rubber on the CMCs. Their alternating current impedance characteristics were measured as a function of applied load and the pressure sensitivity was discussed. The results showed that the impedance decreased as the increasing applied load, and the sample with less CMCs owned high pressure sensitivity, which indicated a novel composite film could act as an alternative of tactile sensor.

  9. Raman spectra of the mixed crystals RuSxSe2- x

    NASA Astrophysics Data System (ADS)

    Lin, H. C.; Lee, M. C.; Lin, S. S.; Huang, Y. S.

    1992-06-01

    The Raman spectra of the mixed RuS xSe 2- x crystal systems have been measured for the first time. As the composition parameter x becomes 1.8 and 0.6, both the E g and the A g modes of pure crystals merge into the RuS 2-like and the RuSe 2-like modes, respectively, in the mixed pyrite. The broadenings and shifts are significant for x range between 0.6 and 1.8. These unique features are different from the sol called "one-mode" and "two-mode" behaviours of some II-VI, III-V compound alloys. Our results are interpreted in terms of the spatial correlation model.

  10. Raman spectra of bilayer graphene covered with Poly(methyl methacrylate) thin film

    SciTech Connect

    Xia Minggang; Su Zhidan; Zhang Shengli

    2012-09-15

    The Raman spectra of bilayer graphene covered with poly(methyl methacrylate) (PMMA) were investigated. Both the G and 2D peaks of PMMA-coated graphene were stiff and broad compared with those of uncovered graphene. This could be attributed to the residual strain induced by high-temperature baking during fabrication of the nanodevice. Furthermore, the two 2D peaks stiffened and broadened with increasing laser power, which is just the reverse to uncovered graphene. The stiffness is likely caused by graphene compression induced by the circular bubble of the thin PMMA film generated by laser irradiation. Our findings may contribute to the application of PMMA in the strain engineering of graphene nanodevices.

  11. Solvent effects on the resonance Raman spectra of bacteriochlorophyll a cation radical

    NASA Astrophysics Data System (ADS)

    Misono, Yasuhito; Nishizawa, Ei-ichi; Limantara, Leenawaty; Koyama, Yasushi; Itoh, Koichi

    1995-04-01

    Resonance Raman (RR) spectra were measured for the cation radical of bacteriochlorophyll a in acetone, methanol, dichloromethane and mixed solvents of acetone and methanol. The ring-breathing (C a-C m stretching) frequency of the radical (abbreviated as vr+) was observed at 1601 cm -1 in acetone (forming a penta-coordinated monomer), at 1587 cm -1 in a methanol (forming a hexa-coordinated monomer) and at 1600 cm -1 in dichloromethane (forming a penta-coordinated aggregate). The RR spectrum of the radical in dichloromethane is almost identical to the transient RR spectrum ascribed to 'the aggregated T 1 species of Bchl a' formed in the particular solvent by Nishizawa, Limantara, Nanjou, Nagae, Kakuno and Koyama, indicating that their interpretation needs to be revised.

  12. Theoretical Study of Infrared and Raman Spectra of Hydrated Magnesium Sulfate Salts

    NASA Technical Reports Server (NTRS)

    Chaban, Galina M.; Huo, Winifred M.; Lee, Timothy J.; Kwak, Dochan (Technical Monitor)

    2002-01-01

    Harmonic and anharmonic vibrational frequencies, as well as infrared and Raman intensities, are calculated for MgSO4.nH20 (n=1-3). Electronic structure theory at the second order Moller-Plesset perturbation theory (MP2) level with a triple-zeta + polarization (TZP) basis set is used to determine the geometry, properties, and vibrational spectra of pure and hydrated MgSO4 salts. The direct vibrational self-consistent field (VSCF) method and its correlation corrected (CC-VSCF) extension are used to determine anharmonic corrections to vibrational frequencies and intensities for the pure MgSO4 and its complex with one water molecule. Very significant differences are found between vibrational of water molecules in complexes with MgSO4 and pure water. Some of the O-H stretching frequencies are shifted to the red very significantly (by up to 1500-2000/cm) upon complexation with magnesium sulfate. They should be observed between 1700 and 3000/cm in a region very different from the corresponding O-H stretch frequency region of pure water (3700-3800/cm). In addition, the SO2 stretching vibrations are found at lower frequency regions than the water vibrations. They can serve as unique identifiers for the presence of sulfate salts. The predicted infrared and Raman spectra should be of valuable help in the design of future missions and analysis of observed data from the ice surface of Jupiter's moon Europa that possibly contains hydrated MgSO4 salts.

  13. Conformational states of N-acylalanine dithio esters: correlation of resonance Raman spectra with structures

    SciTech Connect

    Lee, H.; Angus, R.H.; Storer, A.C.; Varughese, K.I.; Carey, P.R.

    1988-01-12

    The conformational states of N-acylalanine dithio esters, involving rotational isomers about the RC(=O)NH-CH(CH/sub 3/) and NHCH(CH/sub 3/)-C(=S) bonds, are defined and compared to those of N-acylglycine dithio esters. The structure of N-(p-nitrobenzoyl)-DL-alanine ethyl dithio ester has been determined by X-ray crystallographic analysis; it is a B-type conformer with the amide N atom cis to the thiol sulfur. Raman and resonance Raman (RR) measurements on this compound and for the B conformers of solid N-benzoyl-DL-alanine ethyl dithio ester and N-(..beta..-phenylpropionyl)-DL-alanine ethyl dithio ester and its NHCH(CD/sub 3/)C(=S) and NHCH(CH/sub 3/)/sup 13/C(=S) analogues are used to set up a library of RR data for alanine-based dithio esters in a B-conformer state. RR data for this solid material in its isotopically unsubstituted and CH(C-D/sub 3/)C(=S) and CH(CH/sub 3/)/sup 13/C(=S) forms provide information on the RR signatures of alanine dithio esters in A-like conformations. RR spectra are compared for the solid compounds, for N-(p-nitrobenzoyl)-DL-alanine, N-(..beta..-phenylpropionyl)-DL-alanine, and (methyloxycarbonyl)-L-phenylalanyl-DL-alanine ethyl dithio ester, and for several /sup 13/C=S- and CD/sub 3/-substituted analogues in CCl/sub 4/ or aqueous solutions. The RR data demonstrate that the alanine-based dithio esters take up A, B, and C/sub 5/ conformations in solution. The RR spectra of these conformers are clearly distinguishable from those for the same conformers of N-acylglycine dithio esters. However, the crystallographic and spectroscopic results show that the results show that the conformational properties of N-acylglycine and N-acylalanine dithio esters are very similar.

  14. Raman Spectra of Liquid Water from Ab Initio Molecular Dynamics: Vibrational Signatures of Charge Fluctuations in the Hydrogen Bond Network.

    PubMed

    Wan, Quan; Spanu, Leonardo; Galli, Giulia A; Gygi, François

    2013-09-10

    We report the first ab initio simulations of the Raman spectra of liquid water, obtained by combining first principles molecular dynamics and density functional perturbation theory. Our computed spectra are in good agreement with experiments, especially in the low frequency region. We also describe a systematic strategy to analyze the Raman intensities, which is of general applicability to molecular solids and liquids, and it is based on maximally localized Wannier functions and effective molecular polarizabilities. Our analysis revealed the presence of intermolecular charge fluctuations accompanying the hydrogen bond (HB) stretching modes at 270 cm(-1), in spite of the absence of any Raman activity in the isotropic spectrum. We also found that charge fluctuations partly contribute to the 200 cm(-1) peak in the anisotropic spectrum, thus providing insight into the controversial origin of such peak. Our results highlighted the importance of taking into account electronic effects in interpreting the Raman spectra of liquid water and the key role of charge fluctuations within the HB network; they also pointed at the inaccuracies of models using constant molecular polarizabilities to describe the Raman response of liquid water. PMID:26592405

  15. Time-dependent wave packet averaged vibrational frequencies from femtosecond stimulated Raman spectra

    NASA Astrophysics Data System (ADS)

    Wu, Yue-Chao; Zhao, Bin; Lee, Soo-Y.

    2016-02-01

    Femtosecond stimulated Raman spectroscopy (FSRS) on the Stokes side arises from a third order polarization, P(3)(t), which is given by an overlap of a first order wave packet, |" separators=" Ψ2 ( 1 ) ( p u , t ) > , prepared by a narrow band (ps) Raman pump pulse, Epu(t), on the upper electronic e2 potential energy surface (PES), with a second order wave packet, <" separators=" Ψ1 ( 2 ) ( p r ∗ , p u , t ) | , that is prepared on the lower electronic e1 PES by a broadband (fs) probe pulse, Epr(t), acting on the first-order wave packet. In off-resonant FSRS, |" separators=" Ψ2 ( 1 ) ( p u , t ) > resembles the zeroth order wave packet |" separators=" Ψ1 ( 0 ) ( t ) > on the lower PES spatially, but with a force on |" separators=" Ψ2 ( 1 ) ( p u , t ) > along the coordinates of the reporter modes due to displacements in the equilibrium position, so that <" separators=" Ψ1 ( 2 ) ( p r ∗ , p u , t ) | will oscillate along those coordinates thus giving rise to similar oscillations in P(3)(t) with the frequencies of the reporter modes. So, by recovering P(3)(t) from the FSRS spectrum, we are able to deduce information on the time-dependent quantum-mechanical wave packet averaged frequencies, ω ¯ j ( t ) , of the reporter modes j along the trajectory of |" separators=" Ψ1 ( 0 ) ( t ) > . The observable FSRS Raman gain is related to the imaginary part of P(3)(ω). The imaginary and real parts of P(3)(ω) are related by the Kramers-Kronig relation. Hence, from the FSRS Raman gain, we can obtain the complex P(3)(ω), whose Fourier transform then gives us the complex P(3)(t) to analyze for ω ¯ j ( t ) . We apply the theory, first, to a two-dimensional model system with one conformational mode of low frequency and one reporter vibrational mode of higher frequency with good results, and then we apply it to the time-resolved FSRS spectra of the cis-trans isomerization of retinal in rhodopsin [P. Kukura et al., Science 310, 1006 (2005)]. We obtain the vibrational

  16. [Effect on Fermi Resonance by Some External Fields: Investigation of Fermi Resonance According to Raman Spectra].

    PubMed

    Jiang, Xiu-lan; Sun, Cheng-lin; Zhou, Mi; Li, Dong-fei; Men, Zhi-wei; Li, Zuo-wei; Gao, Shu-qin

    2015-03-01

    Fermi resonance is a phenomenon of molecular vibrational coupling and energy transfer occurred between different groups of a single molecule or neighboring molecules. Many properties of Fermi resonance under different external fields, the investigation method of Raman spectroscopy as well as the application of Fermi resonance, etc need to be developed and extended further. In this article the research results and development about Fermi resonance obtained by Raman spectral technique were introduced systematically according to our work and the results by other researchers. Especially, the results of the behaviors of intramolecular and intermolecular Fermi resonance of some molecules under some external fields such as molecular field, pressure field and temperature field, etc were investigated and demonstrated in detail according to the Raman spectra obtained by high pressure DAC technique, temperature variation technique as well as the methods we planed originally in our group such as solution concentration variation method and LCOF resonance Raman spectroscopic technique, and some novel properties of Fermi resonance were found firstly. Concretely, (1) Under molecular field. a. The Raman spectra of C5H5 N in CH3 OH and H2O indicates that solvent effect can influence Fermi resonance distinctly; b. The phenomena of the asymmetric movement of the Fermi resonance doublets as well as the fundamental involved is tuned by the Fermi resonance which had not been found by other methods were found firstly by our variation solution concentration method; c. The Fermi resonance properties can be influenced distinctly by the molecular group reorganization induced by the hydrogen bond and anti-hydrogen bond in solution; d. Fermi resonance can occurred between C7 H8 and m-C8H10, and the Fermi resonance properties behave quite differently with the solution concentration; (2) Under pressure field. a. The spectral lines shift towards high wavenumber with increasing pressure, and

  17. Coherent anti-Stokes Raman spectra of oxygen atoms in flames.

    PubMed

    Teets, R E; Bechtel, J H

    1981-10-01

    Coherent anti-Stokes Raman spectroscopy (CARS) was used to detect oxygen atoms (electronic Raman scattering) and oxygen molecules (rotational Raman scattering) in both hydrogen-oxygen and methane-oxygen flames. The high spectral resolution of CARS is useful for distinguishing the oxygen-atom signals from larger nearby rotational Raman signals. Saturation of the molecular CARS signal that is due to stimulated Raman scattering was observed. This effect limits the sensitivity of the CARS method. PMID:19710736

  18. Effect of particle size and laser power on the Raman spectra of CuAlO2 delafossite nanoparticles

    NASA Astrophysics Data System (ADS)

    Yassin, O. A.; Alamri, S. N.; Joraid, A. A.

    2013-06-01

    A transparent conductive oxide CuAlO2 delafossite is studied using x-ray powder diffraction (XRD) and micro-Raman spectroscopy measurements as a function of the particle size and laser power from 2 to 20 mW. The XRD results indicate that the lattice parameters and the cell volume expand as the particle size reduces. Large red shifts (˜60 cm-1) and line broadening (˜50 cm-1) are observed as the particle size becomes of the order of 13 nm. These huge values can only be justified if collective effects on the Raman spectra created by the lattice expansion, confinement of phonons and enhanced phonon-phonon interactions are included in the interpretations of the Raman spectra of the CuAlO2 nanoparticles.

  19. Accurate Simulation of Resonance-Raman Spectra of Flexible Molecules: An Internal Coordinates Approach.

    PubMed

    Baiardi, Alberto; Bloino, Julien; Barone, Vincenzo

    2015-07-14

    The interpretation and analysis of experimental resonance-Raman (RR) spectra can be significantly facilitated by vibronic computations based on reliable quantum-mechanical (QM) methods. With the aim of improving the description of large and flexible molecules, our recent time-dependent formulation to compute vibrationally resolved electronic spectra, based on Cartesian coordinates, has been extended to support internal coordinates. A set of nonredundant delocalized coordinates is automatically generated from the molecular connectivity thanks to a new general and robust procedure. In order to validate our implementation, a series of molecules has been used as test cases. Among them, rigid systems show that normal modes based on Cartesian and delocalized internal coordinates provide equivalent results, but the latter set is much more convenient and reliable for systems characterized by strong geometric deformations associated with the electronic transition. The so-called Z-matrix internal coordinates, which perform well for chain molecules, are also shown to be poorly suited in the presence of cycles or nonstandard structures.

  20. Assessing Polarizability Models for the Simulation of Low-Frequency Raman Spectra of Benzene.

    PubMed

    Bender, John S; Coasne, Benoit; Fourkas, John T

    2015-07-23

    Optical Kerr effect (OKE) spectroscopy is a widely used technique for probing the low-frequency, Raman-active dynamics of liquids. Although molecular simulations are an attractive tool for assigning liquid degrees of freedom to OKE spectra, the accurate modeling of the OKE and the motions that contribute to it relies on the use of a realistic and computationally tractable molecular polarizability model. Here we explore how the OKE spectrum of liquid benzene, and the underlying dynamics that determines its shape, are affected by the polarizability model employed. We test a molecular polarizability model that uses a point anisotropic molecular polarizability and three other models that distribute the polarizability over the molecule. The simplest and most computationally efficient distributed polarizability model tested is found to be sufficient for the accurate simulation of the many-body polarizability dynamics of this liquid. We further find that the atomic-to-molecular polarizability transformation approximation [Hu et al. J. Phys. Chem. B 2008, 112, 7837-7849], used in conjunction with this distributed polarizability model, yields OKE spectra whose shapes differ negligibly from those calculated without this approximation, providing a substantial increase in computational efficiency.

  1. Discriminating adenocarcinoma from normal colonic mucosa through deconvolution of Raman spectra

    NASA Astrophysics Data System (ADS)

    Cambraia Lopes, Patricia; Moreira, Joaquim Agostinho; Almeida, Abilio; Esteves, Artur; Gregora, Ivan; Ledinsky, Martin; Lopes, Jose Machado; Henrique, Rui; Oliveira, Albino

    2011-12-01

    In this work, we considered the feasibility of Raman spectroscopy for discriminating between adenocarcinomatous and normal mucosal formalin-fixed colonic tissues. Unlike earlier studies in colorectal cancer, a spectral deconvolution model was implemented to derive spectral information. Eleven samples of human colon were used, and 55 spectra were analyzed. Each spectrum was resolved into 25 bands from 975 to 1720 cm-1, where modes of proteins, lipids, and nucleic acids are observed. From a comparative study of band intensities, those presenting higher differences between tissue types were correlated to biochemical assignments. Results from fitting procedure were further used as inputs for linear discriminant analysis, where combinations of band intensities and intensity ratios were tested, yielding accuracies up to 81%. This analysis yields objective discriminating parameters after fitting optimization. The bands with higher diagnosis relevance detected by spectra deconvolution enable to confine the study to some spectral regions instead of broader ranges. A critical view upon limitations of this approach is presented, along with a comparison of our results to earlier ones obtained in fresh colonic tissues. This enabled to assess the effect of formalin fixation in colonic tissues, and determine its relevance in the present analysis.

  2. Structure, spectra and antioxidant action of ascorbic acid studied by density functional theory, Raman spectroscopic and nuclear magnetic resonance techniques.

    PubMed

    Singh, Gurpreet; Mohanty, B P; Saini, G S S

    2016-02-15

    Structure, vibrational and nuclear magnetic resonance spectra, and antioxidant action of ascorbic acid towards hydroxyl radicals have been studied computationally and in vitro by ultraviolet-visible, nuclear magnetic resonance and vibrational spectroscopic techniques. Time dependant density functional theory calculations have been employed to specify various electronic transitions in ultraviolet-visible spectra. Observed chemical shifts and vibrational bands in nuclear magnetic resonance and vibrational spectra, respectively have been assigned with the help of calculations. Changes in the structure of ascorbic acid in aqueous phase have been examined computationally and experimentally by recording Raman spectra in aqueous medium. Theoretical calculations of the interaction between ascorbic acid molecule and hydroxyl radical predicted the formation of dehydroascorbic acid as first product, which has been confirmed by comparing its simulated spectra with the corresponding spectra of ascorbic acid in presence of hydrogen peroxide.

  3. Structure, spectra and antioxidant action of ascorbic acid studied by density functional theory, Raman spectroscopic and nuclear magnetic resonance techniques

    NASA Astrophysics Data System (ADS)

    Singh, Gurpreet; Mohanty, B. P.; Saini, G. S. S.

    2016-02-01

    Structure, vibrational and nuclear magnetic resonance spectra, and antioxidant action of ascorbic acid towards hydroxyl radicals have been studied computationally and in vitro by ultraviolet-visible, nuclear magnetic resonance and vibrational spectroscopic techniques. Time dependant density functional theory calculations have been employed to specify various electronic transitions in ultraviolet-visible spectra. Observed chemical shifts and vibrational bands in nuclear magnetic resonance and vibrational spectra, respectively have been assigned with the help of calculations. Changes in the structure of ascorbic acid in aqueous phase have been examined computationally and experimentally by recording Raman spectra in aqueous medium. Theoretical calculations of the interaction between ascorbic acid molecule and hydroxyl radical predicted the formation of dehydroascorbic acid as first product, which has been confirmed by comparing its simulated spectra with the corresponding spectra of ascorbic acid in presence of hydrogen peroxide.

  4. NIS, IR and Raman spectra with quantum mechanical calculations for analyzing the force field of hypericin model compounds

    SciTech Connect

    Ulicny, Jozef; Leulliot, Nicolas; Ghomi, Mahmoud; Grajcar, Lydie; Baron, Marie-Helene; Jobic, Herve

    1999-06-15

    Geometry optimization as well as harmonic force field calculations at HF and DFT levels of theory have been performed in order to elucidate the ground state properties of anthrone and emodin, two polycyclic conjugated molecules considered as hypericin model compounds. NIS, IR and FT-Raman spectra of these compounds have been recorded to validate the calculated results (geometry and vibrational modes). Calculated NIS spectra using the lowest energy conformers are in agreement with experiment. In addition, the intramolecular H-bonds in emodin predicted by the calculations can be evidenced using IR spectra as a function of temperature.

  5. Surface-Enhanced Raman Spectra of Tetra(4-Sulfonatophenyl)Porphyrin on the Surface of Plasmonic Silver Films

    NASA Astrophysics Data System (ADS)

    Gogoleva, S. D.; Lavysh, A. V.; Motevich, I. G.; Askirka, V. F.; Strekal, N. D.; Sheinin, V. B.; Koifman, O. I.; Zenkevich, E. I.; Maskevich, S. A.

    2016-05-01

    Absorption and Raman spectra of the tetra(4-sulfonatophenyl)porphyrin (TSPP) zwitterion in aqueous solutions under conditions at which porphyrin nanotubes (PNT) form (pH 1) are presented. TSPP was immobilized on the surface of plasmonic silver films (PSF) via quick transfer of a suspension of the molecules into a solution at pH 5 and onto the film surface in order to avoid degrading the film. Images of PNT and spheroidal TSPP aggregates on the PSF surface were visualized using confocal microscopy. Spatially resolved surface-enhanced Raman spectra (SERS) of these objects were recorded. Differences in SERS of PNT and TSPP globular aggregates are discussed based on quantum-chemical calculations of TSPP vibrational spectra. Vibrational bands sensitive to the tube-spherulite transition are found.

  6. Raman spectra of epitaxial graphene on SiC and of epitaxial graphene transferred to SiO2.

    PubMed

    Lee, Dong Su; Riedl, Christian; Krauss, Benjamin; von Klitzing, Klaus; Starke, Ulrich; Smet, Jurgen H

    2008-12-01

    Raman spectra were measured for mono-, bi-, and trilayer graphene grown on SiC by solid state graphitization, whereby the number of layers was preassigned by angle-resolved ultraviolet photoemission spectroscopy. It was found that the only unambiguous fingerprint in Raman spectroscopy to identify the number of layers for graphene on SiC(0001) is the line width of the 2D (or D*) peak. The Raman spectra of epitaxial graphene show significant differences as compared to micromechanically cleaved graphene obtained from highly oriented pyrolytic graphite crystals. The G peak is found to be blue-shifted. The 2D peak does not exhibit any obvious shoulder structures, but it is much broader and almost resembles a single-peak even for multilayers. Flakes of epitaxial graphene were transferred from SiC onto SiO2 for further Raman studies. A comparison of the Raman data obtained for graphene on SiC with data for epitaxial graphene transferred to SiO2 reveals that the G peak blue-shift is clearly due to the SiC substrate. The broadened 2D peak however stems from the graphene structure itself and not from the substrate.

  7. Measurement of Raman spectra of H2O and SO4(-) in seawater. [using laser spectroscopy

    NASA Technical Reports Server (NTRS)

    Houghton, W. M.

    1975-01-01

    A study of applying laser Raman spectroscopy to remote sensing of the sulfate ion in sea water is in progress. The SO4 Raman spectrum has been obtained from true sea water samples in the laboratory using a CW laser Raman spectrometric system. Radiometric calculations indicate the feasibility of obtaining usable SO4 Raman signals in a field experiment. One of serious difficulties expected in the field experiment would be from fluorescence of phytoplankton and organics.

  8. Dependence of Raman and absorption spectra of stacked bilayer MoS2 on the stacking orientation.

    PubMed

    Park, Seki; Kim, Hyun; Kim, Min Su; Han, Gang Hee; Kim, Jeongyong

    2016-09-19

    Stacked bilayer molybdenum disulfide (MoS2) exhibits interesting physical properties depending on the stacking orientation and interlayer coupling strength. Although optical properties, such as photoluminescence, Raman, and absorption properties, are largely dependent on the interlayer coupling of stacked bilayer MoS2, the origin of variations in these properties is not clearly understood. We performed comprehensive confocal Raman and absorption mapping measurements to determine the dependence of these spectra on the stacking orientation of bilayer MoS2. The results indicated that with 532-nm laser excitation, the Raman scattering intensity gradually increased upon increasing the stacking angle from 0° to 60°, whereas 458-nm laser excitation resulted in the opposite trend of decreasing Raman intensity with increasing stacking angle. This opposite behavior of the Raman intensity dependence was explained by the varying resonance condition between the Raman excitation wavelength and C exciton absorption energy of bilayer MoS2. Our work sheds light on the intriguing effect of the subtle interlayer interaction in stacked MoS2 bilayers on the resulting optical properties.

  9. Dependence of Raman and absorption spectra of stacked bilayer MoS2 on the stacking orientation.

    PubMed

    Park, Seki; Kim, Hyun; Kim, Min Su; Han, Gang Hee; Kim, Jeongyong

    2016-09-19

    Stacked bilayer molybdenum disulfide (MoS2) exhibits interesting physical properties depending on the stacking orientation and interlayer coupling strength. Although optical properties, such as photoluminescence, Raman, and absorption properties, are largely dependent on the interlayer coupling of stacked bilayer MoS2, the origin of variations in these properties is not clearly understood. We performed comprehensive confocal Raman and absorption mapping measurements to determine the dependence of these spectra on the stacking orientation of bilayer MoS2. The results indicated that with 532-nm laser excitation, the Raman scattering intensity gradually increased upon increasing the stacking angle from 0° to 60°, whereas 458-nm laser excitation resulted in the opposite trend of decreasing Raman intensity with increasing stacking angle. This opposite behavior of the Raman intensity dependence was explained by the varying resonance condition between the Raman excitation wavelength and C exciton absorption energy of bilayer MoS2. Our work sheds light on the intriguing effect of the subtle interlayer interaction in stacked MoS2 bilayers on the resulting optical properties. PMID:27661893

  10. Pressure-tuning micro-Raman spectra of artists' pigments: α- and β-copper phthalocyanine polymorphs.

    PubMed

    Beaulieu-Houle, Guillaume; Gilson, Denis F R; Butler, Ian S

    2014-01-01

    The two polymorphs of copper phthalocyanine, α- and β-CuPc, have been examined by micro-Raman spectroscopy at pressures approaching 5.0 GPa. The metastable α-polymorph does not exhibit any structural changes, while the more thermodynamically stable β-polymorph does exhibit a reversible phase transition at 2.0 GPa. The pressure dependences (dν/dP) for a selected number of vibrational modes are reported. Two regions of the Raman spectra, 800-900 cm(-1) and 1100-1200 cm(-1), are sensitive to pressure such that they can be used as indicators of the polymorphic form.

  11. Assignment of bacteriochlorophyll a ligation state from absorption and resonance raman spectra

    SciTech Connect

    Callahan, P.M.; Cotton, T.M.

    1987-11-11

    Absorption and Soret excitation resonance Raman (RR) spectra have been obtained for a series of coordination forms on monomeric bacteriochlorophyll a (BChl a). Strong and moderate intensity bands are observed in the RR spectrum at 1609 and 1530 cm/sup -1/ for five-coordinate species, which shift to 1595 and 1512 cm/sup -1/, respectively, in the six-coordinate form. These coordination-sensitive vibrations are independent of the nature of the axial ligand and are suggested to have significant C/sub a/ C/sub m/ character, while several other less intense coordination-sensitive bands at 1463, 1444, and 1375 cm/sup -1/ are considered to arise from C/sub b/C/sub b/ and C/sub a/N stretching vibrations. These coordination-sensitive RR bands were used to determine BChl a ligation state in the solvents used, and structure correlations based on absorption maxima have been developed. The Q/sub x/ absorption band position is sensitive not only to BChl a Mg/sup 2 +/ coordination number but also to the nature of the axial ligand, i.e., oxygen, sulfur, or nitrogen. Q/sub x/ maxima are observed at 570, 575-580, and 582 nm for five-coordinate oxygen, sulfur, and nitrogen ligands, respectively, and at 590-595 and 605-612 nm, for six-coordinate oxygen and nitrogen species, respectively. The Q/sub y/ absorption maximum is insensitive to coordination number changes but is dependent on the nature of the axial ligand: 770 nm for oxygen ligand(s) and 775 nm for nitrogen ligand(s). A similar series of absorption and Soret excitation RR spectra were obtained for the demetalated form of BChl a, BPheo a.

  12. Measurement and Simulation of Spontaneous Raman Scattering Spectra in High-Pressure, Fuel-Rich H2-Air Flames

    NASA Technical Reports Server (NTRS)

    Kojima, Jun; Nguyen, Quang-Viet

    2003-01-01

    Rotational vibrational spontaneous Raman spectra (SRS) of H2, N2, and H2O have been measured in H2-air flames at pressures up to 30 atm as a first stem towards establishing a comprehensive Raman spectral database for temperatures and species in high-pressure combustion. A newly developed high-pressure burner facility provides steady, reproducible flames with a high degree of flow precision. We have obtained an initial set of measurements that indicate the spectra are of sufficient quality in terms of spectral resolution, wavelength coverage, and signal-to-noise ratio for use in future reference standards. The fully resolved Stokes and anti-Stokes shifted SRS spectra were collected in the visible wavelength range (400-700 nm) using pulse-stretched 532 nm excitation and a non-intensified CCD spectrograph with a high-speed shutter. Reasonable temperatures were determined via the intensity distribution of rotational H2 lines at stoichiometry and fuel-rich conditions. Theoretical Raman spectra of H2 were computed using a semi-classical harmonic-oscillator model with recent pressure broadening data and were compared with experimental results. The data and simulation indicated that high-J rotational lines of H2 might interfere with the N2 vibrational Q-branch lines, and this could lead to errors in N2-Raman thermometry based on the line-fitting method. From a comparison of N2 Q-branch spectra in lean H2 low-pressure (1.2 atm) and high-pressure (30 atm) flames, we found no significant line-narrowing or -broadening effects at the current spectrometer resolution of 0.04 nm.

  13. Simulations of the infrared, Raman, and 2D-IR photon echo spectra of water in nanoscale silica pores

    DOE PAGES

    Burris, Paul C.; Laage, Damien; Thompson, Ward H.

    2016-05-20

    Vibrational spectroscopy is frequently used to characterize nanoconfined liquids and probe the effect of the confining framework on the liquid structure and dynamics relative to the corresponding bulk fluid. However, it is still unclear what molecular-level information can be obtained from such measurements. In this Paper, we address this question by using molecular dynamics (MD) simulations to reproduce the linear infrared (IR), Raman, and two-dimensional IR (2D-IR) photon echo spectra for water confined within hydrophilic (hydroxyl-terminated) silica mesopores. To simplify the spectra the OH stretching region of isotopically dilute HOD in D2O is considered. An empirical mapping approach is usedmore » to obtain the OH vibrational frequencies, transition dipoles, and transition polarizabilities from the MD simulations. The simulated linear IR and Raman spectra are in good general agreement with measured spectra of water in mesoporous silica reported in the literature. The key effect of confinement on the water spectrum is a vibrational blueshift for OH groups that are closest to the pore interface. The blueshift can be attributed to the weaker hydrogen bonds (H-bonds) formed between the OH groups and silica oxygen acceptors. Non-Condon effects greatly diminish the contribution of these OH moieties to the linear IR spectrum, but these weaker H-bonds are readily apparent in the Raman spectrum. The 2D-IR spectra have not yet been measured and thus the present results represent a prediction. Lastly, the simulated spectra indicate that it should be possible to probe the slower spectral diffusion of confined water compared to the bulk liquid by analysis of the 2D-IR spectra.« less

  14. [Density functional theory study of surface-enhanced raman spectra and excited state of 1,4-benzenedithiol].

    PubMed

    Shao, Yang-Fan; Li, Chong-Yang; Feng, Yuan-Ming; Lin, Wang

    2014-02-01

    Raman scattering spectra and optimized geometries of the 1,4-benzenedithiol molecule and complexes have been calculated using density functional theory (DFT) with B3LYP functional at the level of 6-311G+(d) basis set for C, H, S atoms and LanL2DZ for Ag, Au atoms, respectively. The optimized 1,4-benzenedithiol molecule was non-planar structure and the angle between benzene ring plane and S-H is 20.20. By means of the simulation of molecule adsorbed on gold and silver cluster, we concluded that gold clusters are nearly parallel to the benzenedithiol molecule and silver clusters are almost perpendicular to the molecular surface. The authors studied the interaction between Raman intensity and molecular properties, such as static polarizablity and charge distribution. The Raman intensity of 1,4-BDT-Au2, 1,4-BDT-Ag2 and Ag2-1,4-BDT-Au2 were in good agreement with static polarizability. The excited states of Ag2-1,4-BDT-Au2 complex were calculated using time-dependent density functional theory (TDDFT). And the simulated absorption spectra and several allowed singlet excited states were analyzed to investigate the surface-enhanced Raman chemical enhancement mechanism. PMID:24822413

  15. Molecular component distribution imaging of living cells by multivariate curve resolution analysis of space-resolved Raman spectra

    NASA Astrophysics Data System (ADS)

    Ando, Masahiro; Hamaguchi, Hiro-o.

    2014-01-01

    Label-free Raman microspectroscopy combined with a multivariate curve resolution (MCR) analysis can be a powerful tool for studying a wide range of biomedical molecular systems. The MCR with the alternating least squares (MCR-ALS) technique, which retrieves the pure component spectra from complicatedly overlapped spectra, has been successfully applied to in vivo and molecular-level analysis of living cells. The principles of the MCR-ALS analysis are reviewed with a model system of titanium oxide crystal polymorphs, followed by two examples of in vivo Raman imaging studies of living yeast cells, fission yeast, and budding yeast. Due to the non-negative matrix factorization algorithm used in the MCR-ALS analysis, the spectral information derived from this technique is just ready for physical and/or chemical interpretations. The corresponding concentration profiles provide the molecular component distribution images (MCDIs) that are vitally important for elucidating life at the molecular level, as stated by Schroedinger in his famous book, "What is life?" Without any a priori knowledge about spectral profiles, time- and space-resolved Raman measurements of a dividing fission yeast cell with the MCR-ALS elucidate the dynamic changes of major cellular components (lipids, proteins, and polysaccharides) during the cell cycle. The MCR-ALS technique also resolves broadly overlapped OH stretch Raman bands of water, clearly indicating the existence of organelle-specific water structures in a living budding yeast cell.

  16. Computation of Raman Spectra from Density Matrix Linear Response Theory in Extended Lagrangian Born-Oppenheimer Molecular Dynamics

    NASA Astrophysics Data System (ADS)

    Niklasson, Anders; Coe, Joshua; Cawkwell, Marc

    2011-06-01

    Linear response calculations based on density matrix perturbation theory [A. M. N. Niklasson and M. Challacombe, Phys. Rev. Lett. 92, 193001 (2004)] have been developed within a self-consistent tight-binding method for extended Lagrangian Born-Oppenheimer molecular dynamics [A. M. N. Niklasson, Phys. Rev. Lett., 100, 123004 (2008)]. Besides the nuclear coordinates, extended auxiliary electronic degrees of freedom are added to the regular Born-Oppenheimer Lagrangian, both for the electronic ground state and response densities. This formalism enables highly efficient, on-the-fly, analytic computations of the polarizability autocorrelation functions and the Raman spectra during energy conserving Born-Oppenheimer molecular dynamics trajectories. We will illustrate these capabilities via time-resolved Raman spectra computed during explicit, reactive molecular dynamics simulations of the shock compression of methane, benzene, tert-butylacetylene. Comparisons will be made with experimental results where possible.

  17. An analysis of stable forms of CL-20: A DFT study of conformational transitions, infrared and Raman spectra

    NASA Astrophysics Data System (ADS)

    Kholod, Yana; Okovytyy, Sergiy; Kuramshina, Gulnara; Qasim, Mohammad; Gorb, Leonid; Leszczynski, Jerzy

    2007-10-01

    The most stable forms of 2,4,6,8,10,12-hexanitro-2,4,6,8,10,12-hexaazaisowurtzitane (CL-20) were analyzed at the B3LYP/6-31G+(d,p) level of theory. The mechanism of conformational transformations was clarified. The activation energies of those transitions were found to be quite low and lie in the range 1.2-4.0 kcal mol -1. IR and Raman spectra of the studied CL-20 forms were simulated. The predicted vibrational modes were used for comparison with the experimental values. The unique peaks for each of the conformers in IR and Raman spectra were found. These peaks can be used as the "signatures" of the studied conformers and for identification of different polymorphs of CL-20 in mixtures.

  18. Infrared and Raman spectra, r0 structural parameters, conformational stability, and vibrational assignment of 2-cyanoethylamine

    NASA Astrophysics Data System (ADS)

    Durig, James R.; Darkhalil, Ikhlas D.; Klaassen, Joshua J.

    2012-09-01

    The infrared spectra (4000-200 cm-1) of the gas and solid and the Raman spectrum (4000-40 cm-1) of the liquid have been recorded. Vibrational fundamentals have been identified for four of the possible five stable conformers and complete vibrational assignments have been made for the Gg and Gt forms where the Capital G is for Gauche for the orientation around the Csbnd C bond and the lower cases g and t for gauche and trans orientation for the amine. These forms are the two lowest energy conformers. Vibrational assignments have been supported by MP2(full)/6-31G(d) ab initio calculations to predict harmonic force constants, fundamental frequencies, infrared intensities, Raman activities, and depolarization ratios. The conformational stabilities have been predicted from ab initio calculations utilizing several different basis sets up to aug-cc-pVTZ for both MP2(full) and density functional theory calculations by the B3LYP method. The enthalpy differences between the Gg and Gt conformers was determined to be 75 cm-1 and for the Gg to Tg form 333 cm-1. The r0 structural parameters have been obtained for the two most stable conformers from predicted parameters from ab initio MP2(full)/6-311+G(d,p) calculations adjusted to fit the previously reported microwave rotational constants. The determined heavy atom structural values for the Gg [Gt] conformer are: the distances (Å) N1sbnd C2 = 1.461(3) [1.453(3)], C2sbnd C3 = 1.535(3) [1.545(3)], C3sbnd C4 = 1.466(3) [1.463(3)], C4tbnd N5 = 1.161(3) [1.161(3)] and angles (°) ∠N1C2C3 = 109.5(5) [116.0(5)], ∠C2C3C4 = 111.1(5) [111.1(5)], ∠C3C4N5 = 177.4(5) [177.0(5)]. These parameters are compared to those estimated from the microwave study. The results are discussed and compared to the corresponding properties of some similar molecules.

  19. Broadening of the intracavity and output spectra of a raman fiber laser with a low-Q cavity

    NASA Astrophysics Data System (ADS)

    Babin, S. A.; Churkin, D. V.; Ismagulov, A. E.; Kablukov, S. I.; Podivilov, E. V.

    2007-11-01

    Intracavity and output spectra broadened in a Raman fiber laser with a low-Q cavity are measured and theoretically described. It is demonstrated that the previously developed approach of optical-wave turbulence can be used to describe the spectral broadening owing to the multiple four-wave mixing processes that involves numerous longitudinal modes of the low-Q cavity. The theoretically calculated spectra are in good agreement with the experimental data for various output reflection coefficients of the fiber Bragg gratings across the entire power range.

  20. Influence of ageing on Raman spectra and the conductivity of monolayer graphene samples irradiated by heavy and light ions

    NASA Astrophysics Data System (ADS)

    Butenko, A.; Zion, E.; Kaganovskii, Yu.; Wolfson, L.; Richter, V.; Sharoni, A.; Kogan, E.; Kaveh, M.; Shlimak, I.

    2016-07-01

    The influence of long-term ageing (about one year) on the Raman scattering (RS) spectra and the temperature dependence of conductivity has been studied in two series of monolayer graphene samples irradiated by different doses of C+ and Xe+ ions. It is shown that the main result of ageing consists of changes in the intensity and position of D- and G- and 2D-lines in RS spectra and in an increase of the conductivity. The observed effects are explained in terms of an increase of the radius of the "activated" area around structural defects.

  1. Resonance Raman and vibronic absorption spectra with Duschinsky rotation from a time-dependent perspective: Application to β-carotene

    NASA Astrophysics Data System (ADS)

    Banerjee, Shiladitya; Kröner, Dominik; Saalfrank, Peter

    2012-12-01

    The time-dependent approach to electronic spectroscopy, as popularized by Heller and co-workers in the 1980s, is applied here in conjunction with linear-response, time-dependent density functional theory to study vibronic absorption and resonance Raman spectra of β-carotene, with and without a solvent. Two-state models, the harmonic and the Condon approximations are used in order to do so. A new code has been developed which includes excited state displacements, vibrational frequency shifts, and Duschinsky rotation, i.e., mode mixing, for both non-adiabatic spectroscopies. It is shown that Duschinsky rotation has a pronounced effect on the resonance Raman spectra of β-carotene. In particular, it can explain a recently found anomalous behaviour of the so-called ν1 peak in resonance Raman spectra [N. Tschirner, M. Schenderlein, K. Brose, E. Schlodder, M. A. Mroginski, C. Thomsen, and P. Hildebrandt, Phys. Chem. Chem. Phys. 11, 11471 (2009)], 10.1039/b917341b, which shifts with the change in excitation wavelength.

  2. Quantum Mechanics/Molecular Mechanics Calculation of the Raman Spectra of the Phycocyanobilin Chromophore in α-C-Phycocyanin

    PubMed Central

    Mroginski, Maria Andrea; Mark, Franz; Thiel, Walter; Hildebrandt, Peter

    2007-01-01

    We have established a quantum mechanics (QM)/molecular mechanics (MM) hybrid method for calculating the Raman spectra of protein-bound cofactors using the α-subunit of C-phycocyanin containing a phycocyanobilin (PCB) chromophore as a test case. The PCB cofactor was described with density functional theory, whereas the protein matrix was treated with the CHARMM force field. The Hessian matrix of the QM region was built by taking into account bonded and nonbonded interactions with the protein environment and projected onto the internal coordinate space. Force constants were scaled with a global set of scaling factors, and the Raman intensities were computed using a finite-field method combined with a fourth-order differentiation algorithm for the calculation of the polarizability derivatives. In general, the QM/MM results provided a substantially improved description of the experimental resonance Raman (RR) spectra of the protein-bound cofactor compared to QM calculations of isolated PCB models in vacuo. The results allow the assessment of the effect of the protein-cofactor interactions on the RR spectra and reveal the potential and limitations of QM calculations on isolated tetrapyrroles for determining the chromophore structures in the various species and states of phytochromes for which three-dimensional structures are not available. PMID:17513350

  3. FTIR and FT-Raman spectra and DFT vibrational analysis of phosphorus-containing dendrons.

    PubMed

    Furer, V L; Vandyukova, I I; Vandyukov, A E; Majoral, J P; Caminade, A M; Kovalenko, V I

    2008-12-01

    FTIR and FT-Raman spectra of four generations of phosphorus-containing dendrons with terminal aldehyde or PCl groups have been recorded and analyzed. Their spectral patterns are determined by the ratio T/R (T, the number of terminal groups; R, the number of repeated units). Bands assigned to the core, repeated units and terminal groups were separated by the difference spectroscopy method. The optimized geometry, frequencies and intensity of IR bands of G(1v) generation dendron with terminal aldehyde groups were obtained by the density functional theory (DFT). It was found that the internal skeleton of molecules exists in a single stable conformation with planar O-C(6)H(4)-CHN-N(CH(3))-P(S) fragments, but terminal groups may adopt the t,g,g- and t,-g,g-rotational isomers. The t,-g,g-conformer is 0.74 kcal/mol less stable compared to the t,g,g-conformer. The bond length and bond angles obtained by DFT show the best agreement with experimental data. Relying on DFT calculations a complete assignment of vibrations is proposed for different parts of the studied dendrons. The calculated frequencies and intensity of IR bands of the t,g,g- and t,-g,g-conformers of G(1v) are found to be in reasonable agreement with the experimental results. The most reactive site in dendron is the core function and vinyl group is preferred for nucleophilic attack. In dendrimer the most reactive are the terminal groups.

  4. Effect of TiO2 particles on normal and resonance Raman spectra of coumarin 343: a theoretical investigation.

    PubMed

    Yang, Linzhi; Wu, Wenpeng; Zhao, Yi

    2015-04-28

    It is well known that interfacial structures and charge transfer in dye-sensitized solar cells are extremely important for the enhancement of cell efficiency. Here, the normal Raman spectra (NRS) and resonance Raman spectra (RRS) of a C343-sensitized TiO2 cluster (Ti9O18) are theoretically predicted from combined electronic structure calculations and a vibrationally-resolved spectral method to reveal the relationship between interfacial geometries and excited-state dynamics. The results show that although the NRS of free C343 and the C343-TiO2 cluster correspond to the vibrational motions of C343 in a high frequency domain, their mode frequencies show obvious differences due to the interaction of the TiO2 cluster on C343, and several new Raman active fingerprint modes, such as bidentate chelating bonding modes, can be used to determine interfacial geometries. However, the resonance Raman activities of low-frequency modes are significantly enhanced and several modes from the TiO2 cluster can be observed, consistent with experimental measurements. Furthermore, the RRS from a locally excited state and a charge transfer state of C343-TiO2 are dramatically different, for instance, new Raman active modes with 1212 cm(-1), 1560 cm(-1) and 1602 cm(-1), corresponding to the motions of CH2 rocking, C=C/C-N/C=O stretching and C=O/C=C stretching, appear from the charge transfer state. The obtained information on mode-specific reorganization energies from these excited states is greatly helpful to understand and control interfacial electron transfer.

  5. Discriminant analysis of Raman spectra for body fluid identification for forensic purposes.

    PubMed

    Sikirzhytski, Vitali; Virkler, Kelly; Lednev, Igor K

    2010-01-01

    Detection and identification of blood, semen and saliva stains, the most common body fluids encountered at a crime scene, are very important aspects of forensic science today. This study targets the development of a nondestructive, confirmatory method for body fluid identification based on Raman spectroscopy coupled with advanced statistical analysis. Dry traces of blood, semen and saliva obtained from multiple donors were probed using a confocal Raman microscope with a 785-nm excitation wavelength under controlled laboratory conditions. Results demonstrated the capability of Raman spectroscopy to identify an unknown substance to be semen, blood or saliva with high confidence.

  6. [Experimental study of Raman spectra of magnesite at 297 K and at the pressure of 0.13-1 GPa].

    PubMed

    Wang, Yu; Zheng, Hai-fei

    2005-09-01

    The experimental study of Raman spectra of magnesite has been conducted at the pressure of 967 MPa and at the temperatureof 297 K using a cubic zirconia-anvil cell. The result shows that neither phase transition nor organic substances were observed during compression, and the Raman peak of magnesite shifted to higher frequency with increasing pressure. The relation between the pressure and the Raman peak position of magnesite (1094 cm(-1)) was obtained as follows: v (cm(-1)) = 0.007 44 x P(MPa) + 1 093.3. The value of dv/dP of magnesite is greater than the previous data obtained by Gillet, which was mostly taken under the mantle pressure. And at the ambient temperature, magnesite can be used as a pressure gauge, and the relation between the pressure and Raman shift of 1 094 cm(-1) peak position is given as following: P(MPa) = 125.8 x (deltavp) 1094 + 124.7 (1094 cm(-1) < vp < 1101 cm(-1)).

  7. Ultraviolet Raman spectra and cross-sections of the G-series nerve agents.

    PubMed

    Christesen, Steven D; Pendell Jones, Jay; Lochner, Joseph M; Hyre, Aaron M

    2008-10-01

    Ultraviolet (UV) Raman spectroscopy is being applied to the detection of chemical agent contamination of natural and man-made surfaces. In support of these efforts, we have measured the UV Raman signatures of the G-series nerve agents GA (tabun), GB (sarin), GD (soman), GF (cyclosarin), and the agent simulant diisopropyl methylphosphonate (DIMP) at 248 nm and 262 nm, as well as taking their UV Raman and UV absorption cross-sections. Of these chemicals, only GA exhibits any significant pre-resonance enhancement. We also show that reduction of the excitation wavelength from 262 nm to 248 nm effectively shifts the Raman spectrum away from a substantial sample fluorescence background, implying a significant improvement in detection capability. PMID:18926015

  8. Impact of electronic defects on the Raman spectra from electrodeposited Cu(In,Ga)Se2 solar cells: Application for non-destructive defect assessment

    NASA Astrophysics Data System (ADS)

    Ruiz, C. M.; Fontané, X.; Fairbrother, A.; Izquierdo-Roca, V.; Broussillou, C.; Bodnar, S.; Pérez-Rodríguez, A.; Bermúdez, V.

    2013-03-01

    This work reports on the electrical and Raman scattering analysis of Cu(In,Ga)Se2 cells synthesised with different densities of Se and Cu related point defects. The analysis of the Raman spectra from the surface region of the absorbers shows a direct correlation between the spectral features of the main Raman peak and the density of Se vacancies detected by admittance spectroscopy, being sensitive to the presence of vacancy densities higher than 1015 cm-3. These results corroborate the potential of Raman scattering for the non-destructive detection of electronic defects with potential impact on the characteristics of the solar cells.

  9. Interpretation of FTIR spectra of polymers and Raman spectra of car paints by means of likelihood ratio approach supported by wavelet transform for reducing data dimensionality.

    PubMed

    Martyna, Agnieszka; Michalska, Aleksandra; Zadora, Grzegorz

    2015-05-01

    The problem of interpretation of common provenance of the samples within the infrared spectra database of polypropylene samples from car body parts and plastic containers as well as Raman spectra databases of blue solid and metallic automotive paints was under investigation. The research involved statistical tools such as likelihood ratio (LR) approach for expressing the evidential value of observed similarities and differences in the recorded spectra. Since the LR models can be easily proposed for databases described by a few variables, research focused on the problem of spectra dimensionality reduction characterised by more than a thousand variables. The objective of the studies was to combine the chemometric tools easily dealing with multidimensionality with an LR approach. The final variables used for LR models' construction were derived from the discrete wavelet transform (DWT) as a data dimensionality reduction technique supported by methods for variance analysis and corresponded with chemical information, i.e. typical absorption bands for polypropylene and peaks associated with pigments present in the car paints. Univariate and multivariate LR models were proposed, aiming at obtaining more information about the chemical structure of the samples. Their performance was controlled by estimating the levels of false positive and false negative answers and using the empirical cross entropy approach. The results for most of the LR models were satisfactory and enabled solving the stated comparison problems. The results prove that the variables generated from DWT preserve signal characteristic, being a sparse representation of the original signal by keeping its shape and relevant chemical information.

  10. Interpretation of FTIR spectra of polymers and Raman spectra of car paints by means of likelihood ratio approach supported by wavelet transform for reducing data dimensionality.

    PubMed

    Martyna, Agnieszka; Michalska, Aleksandra; Zadora, Grzegorz

    2015-05-01

    The problem of interpretation of common provenance of the samples within the infrared spectra database of polypropylene samples from car body parts and plastic containers as well as Raman spectra databases of blue solid and metallic automotive paints was under investigation. The research involved statistical tools such as likelihood ratio (LR) approach for expressing the evidential value of observed similarities and differences in the recorded spectra. Since the LR models can be easily proposed for databases described by a few variables, research focused on the problem of spectra dimensionality reduction characterised by more than a thousand variables. The objective of the studies was to combine the chemometric tools easily dealing with multidimensionality with an LR approach. The final variables used for LR models' construction were derived from the discrete wavelet transform (DWT) as a data dimensionality reduction technique supported by methods for variance analysis and corresponded with chemical information, i.e. typical absorption bands for polypropylene and peaks associated with pigments present in the car paints. Univariate and multivariate LR models were proposed, aiming at obtaining more information about the chemical structure of the samples. Their performance was controlled by estimating the levels of false positive and false negative answers and using the empirical cross entropy approach. The results for most of the LR models were satisfactory and enabled solving the stated comparison problems. The results prove that the variables generated from DWT preserve signal characteristic, being a sparse representation of the original signal by keeping its shape and relevant chemical information. PMID:25757825

  11. Raman vibrational spectra of bulk to monolayer ReS2 with lower symmetry

    DOE PAGES

    Feng, Yanqing; Zhou, Wei; Wang, Yaojia; Zhou, Jian; Liu, Erfu; Fu, Yajun; Ni, Zhenhua; Wu, Xinglong; Yuan, Hongtao; Miao, Feng; et al

    2015-08-26

    Lattice structure and symmetry of two-dimensional (2D) layered materials are of key importance to their fundamental mechanical, thermal, electronic and optical properties. Raman spectroscopy, as a convenient and nondestructive tool, however has its limitations on identifying all symmetry allowing Raman modes and determining the corresponding crystal structure of 2D layered materials with high symmetry like graphene and MoS2. Due to lower structural symmetry and extraordinary weak interlayer coupling of ReS2, we successfully identified all 18 first-order Raman active modes for bulk and monolayer ReS2. Without van der Waals (vdW) correction, our local density approximation (LDA) calculations successfully reproduce all themore » Raman modes. Our calculations also suggest no surface reconstruction effect and the absence of low frequency rigid-layer Raman modes below 100 cm-1. As a result, combining with Raman and LDA thus provides a general approach for studying the vibrational and structural properties of 2D layered materials with lower symmetry.« less

  12. Appearance of radial breathing modes in Raman spectra of multi-walled carbon nanotubes upon laser illumination

    NASA Astrophysics Data System (ADS)

    Rai, Padmnabh; Mohapatra, Dipti R.; Hazra, K. S.; Misra, D. S.; Ghatak, Jay; Satyam, P. V.

    2008-03-01

    The Raman spectra of the multi-walled carbon nanotubes are studied with the laser power of 5-20 mW. We observe the Raman bands at ˜1352, 1581, 1607, and 2700 cm -1 with 5 mW laser power. As the laser power is increased to 10, 15 and 20 mW, the radial breathing modes (RBMs) of the single wall carbon nanotubes (SWNTs) appear in the range 200-610 cm -1. The diameter corresponding to the highest RBM is ˜0.37 nm, the lowest reported so far. The RBMs are attributed to the local synthesis of the SWNTs at the top surface of the samples at higher laser power.

  13. FT-IR and FT-Raman spectra, MEP and HOMO-LUMO of 2,5-dichlorobenzonitrile: DFT study.

    PubMed

    Alcolea Palafox, M; Bhat, Daisy; Goyal, Yasha; Ahmad, Shabbir; Hubert Joe, I; Rastogi, V K

    2015-02-01

    The experimental FT-IR and FT-Raman spectra of 2,5-dichlorobenzonitrile molecule were recorded at room temperature, and the results compared with quantum chemical theoretical values using MP2 and DFT methods. Molecular geometry, vibrational wavenumbers and thermodynamic parameters were calculated. With the help of specific scaling procedures for the computed wavenumbers, the experimentally observed FTIR and FT-Raman bands were analyzed and assigned to different normal modes of the molecule. Most of the modes have wavenumbers in the expected range and the error obtained was in general very low. Several general conclusions were deduced. The NBO analysis has been done and Molecular Electrostatic Potential (MEP) has been plotted.

  14. Infrared, Raman, resonance Raman spectra and lattice dynamics calculations of the solid potassium(I) nickel(II) thiophosphate compound, KNiPS 4

    NASA Astrophysics Data System (ADS)

    Sourisseau, C.; Cavagnat, R.; Fouassier, M.; Brec, R.; Elder, S. H.

    1995-06-01

    The UV-visible (350-850 nm), infrared and Raman (20-700 cm -1) spectra of a new KNiPS 4 solid compound have been analyzed using powder samples and crystalline platelets. From polarization measurements, the main electronic transition of 1F 2← 1A 1 type due to the PS 43- thiophosphate groups are localized in the 360-570 nm range and vibrational assignments for most of the fundamental modes are proposed. These assignments were checked by complete valence force field lattice dynamics calculations in the various symmetry blocks of the tetragonal crystal structure (D 4h14). Potential energy distributions as well as mean squared vibrational amplitude calculations have shown strong ν(NiS) and σ(SPS) couplings in the (NiPS 4) - structural chains and remarkably high ν(NiS) infrared frequencies. Furthermore, the resonance Raman spectra of single crystals and powder samples were recorded over a wide range (647.1-476.5 nm) of excitatiob wavelengths. This allowed to probe the nature of the broad electronic transition of the complex centered around 510 nm and responsible for KNiPS 4 brown color. The Raman excitation profiles of several fundamentals and combination bands were thus established. Under resonance conditions, various crystalline components of A 1g, B 1g and B 2g symmetry for the ν 4(F 2) or ν 2(E) deformation modes of the PS 43- groups are enhanced. No overtone progressions involving totally symmetric modes were observed but anomalously intense high-order combination bands were detected. It is thus concluded that adiabatic as well as non-adiabatic interactions must play a great role in the vibronically induced Raman scattering processes. Reasons for this peculiar behavior are discussed in relation to the X-ray crystal structure of the KNiPS 4 compound. All the experimental results imply the presence of substantial site and factor group effects on the optical and vibronic properties of the thiophosphate anions.

  15. Stimulated resonance Raman scattering from organic dyes in a multiple-scattering medium as a potential method for determining their vibrational spectra

    SciTech Connect

    Yashchuk, V P; Tikhonov, E A; Bukatar', A O; Prigodiuk, O A; Smalyuk, A P

    2011-10-31

    A method is described for deriving Raman spectra of organic dyes from their random lasing spectra. The method was tested using Rhodamine 6G. The Raman spectrum obtained for this dye agrees well with the spectra measured by standard techniques but is more structured, which allows unresolved features to be detected. The spectrum provides more detailed information owing to the interference between the Raman scattered light and amplified spontaneous emission of the dye molecules within a photon mean free path. One advantage of the method is that the luminescence of the dye helps to observe Raman lines, which allows one to work in the Stokes region and facilitates the measurement procedure. (nonlinear optical phenomena)

  16. Comparison of several chemometric methods of libraries and classifiers for the analysis of expired drugs based on Raman spectra.

    PubMed

    Gao, Qun; Liu, Yan; Li, Hao; Chen, Hui; Chai, Yifeng; Lu, Feng

    2014-06-01

    Some expired drugs are difficult to detect by conventional means. If they are repackaged and sold back into market, they will constitute a new public health challenge. For the detection of repackaged expired drugs within specification, paracetamol tablet from a manufacturer was used as a model drug in this study for comparison of Raman spectra-based library verification and classification methods. Raman spectra of different batches of paracetamol tablets were collected and a library including standard spectra of unexpired batches of tablets was established. The Raman spectrum of each sample was identified by cosine and correlation with the standard spectrum. The average HQI of the suspicious samples and the standard spectrum were calculated. The optimum threshold values were 0.997 and 0.998 respectively as a result of ROC and four evaluations, for which the accuracy was up to 97%. Three supervised classifiers, PLS-DA, SVM and k-NN, were chosen to establish two-class classification models and compared subsequently. They were used to establish a classification of expired batches and an unexpired batch, and predict the suspect samples. The average accuracy was 90.12%, 96.80% and 89.37% respectively. Different pre-processing techniques were tried to find that first derivative was optimal for methods of libraries and max-min normalization was optimal for that of classifiers. The results obtained from these studies indicated both libraries and classifier methods could detect the expired drugs effectively, and they should be used complementarily in the fast-screening.

  17. UV and VIS Raman spectra of natural lonsdaleites: towards a recognised standard.

    PubMed

    Smith, David C; Godard, Gaston

    2009-08-01

    A UV laser has now been used to measure the Raman spectrum of lonsdaleite. This mineral species is a little-known hexagonal form of carbon having no known P-T field of stability. Lonsdaleite is known to coexist with diamond and/or graphite in certain impact structures and meteorites. Its presence in microinclusions in some ultrahigh-pressure eclogites is under discussion as there is a considerable wavenumber overlap of the sp(3) Raman band of lonsdaleite in the 1200-1400 cm(-1) region with certain bands of haematite, graphite and diamond, and also with "disordered-diamond" having a downshifted wavenumber. Various incoherent previously published values of the Raman bands are briefly reviewed and an attempt is made to establish a reference spectrum. Four samples of lonsdaleite from the Zapadnaya and Popigai impact structures (Ukraine) were measured with three different laser sources (488, 514.5 and 325 nm) with two Raman spectrometers. UV-Raman was less fluorescent. All the new data were coherent in establishing an sp(3) band centred at 1324+/-4 cm(-1) with a FWHM about five times wider than that of diamond and an intensity about 500 times weaker. The presence of a second band giving a weak shoulder around 1225 cm(-1) is discussed with respect to the alternative of one continuous asymmetrical band.

  18. Infrared and Polarized Raman Spectra of RbAl(SO 4) 2·12H 2O

    NASA Astrophysics Data System (ADS)

    Suresh, G.; Ratheesh, R.; Jayasree, R. S.; Nayar, V. U.; Keresztury, G.

    1996-03-01

    The IR and polarized Raman spectra of a single crystal RbAl(SO4)2·12H2O is recorded and analyzed at room temperature. Bands indicate a stronger S-O bond in RbAl(SO4)2·12H2O than that in a free SO2-4ion. The fraction of reversed sulfate group in the Rb alum is much lower than that in the potassium alum. Broad bands with frequencies considerably shifted from the free state values indicate that water molecules form hydrogen bonds of various strengths. Two crystallographically distinct water molecules are identified in the crystal.

  19. Coupled calculation of vibrational frequencies and intensities. Part VI. IR and Raman spectra of crotonaldehyde, methacrolein and methyl-vinylketone

    NASA Astrophysics Data System (ADS)

    Oelichmann, H.-J.; Bougeard, D.; Schrader, B.

    1981-12-01

    The vibrational spectra of trans-crotonaldehyde, methacrolein and methylvinylketone have been reinvestigated and the bands assigned. Normal coordinate analyses of these molecules based on the given assignments have been carried out in the valence force field approximation. A transferable force field for α, β-unsaturated aldehydes and ketones was obtained leading to good agreement between observed and calculated frequencies. The relative cartesian displacements of the atoms given in the L matrices were used to compute the IR and Raman intensities of each mode by a modified CNDO/2 procedure. The intensity calculations confirm the assignments and support the calculated force constants.

  20. Evolution of the Raman spectra from single-, few-, and many-layer graphene with increasing disorder

    SciTech Connect

    Martins Ferreira, E. H.; Stavale, F.; Moutinho, Marcus V. O.; Lucchese, M. M.; Capaz, Rodrigo B.; Achete, C. A.; Jorio, A.

    2010-09-15

    We report on the micro-Raman spectroscopy of monolayer, bilayer, trilayer, and many layers of graphene (graphite) bombarded by low-energy argon ions with different doses. The evolution of peak frequencies, intensities, linewidths, and areas of the main Raman bands of graphene is analyzed as function of the distance between defects and number of layers. We describe the disorder-induced frequency shifts and the increase in the linewidth of the Raman bands by means of a spatial-correlation model. Also, the evolution of the relative areas A{sub D}/A{sub G}, A{sub D}{sup '}/A{sub G}, and A{sub G}{sup '}/A{sub G} is described by a phenomenological model. The present results can be used to fully characterize disorder in graphene systems.

  1. The cell-cycle dependence of the spectra of proliferating normal and neoplastic single cells using confocal resonance Raman microspectroscopy

    NASA Astrophysics Data System (ADS)

    Boydston-White, Susie; Liu, Cheng-Hui; Alfano, Robert R.

    2013-03-01

    Confocal resonance Raman (RR) spectra were collected from single proliferating cells and analyzed to detect spectral patterns that are cell-cycle dependent, as a consequence of cellular proliferation — normal or abnormal. The cells' biochemical age at each time point was confirmed by immunohistochemical staining to identify the presence or absence of cellular components that appear and/or disappear as the cells proceed through the cell-cycle. The RR spectra were collected and compared for each time point as the cells proceeded through the cell cycle to determine what spectral vibrational patterns are cell-cycle dependent. In this study, the question is whether the cell-cycle dependent RR spectral patterns of the vibrational modes observed in proliferating normal and neoplastic single cells are due to a state of cancer or are simply the consequences of the cells' changing internal biochemistry due to the process of cellular proliferation --- normal or abnormal.

  2. FT-IR and Raman spectra and vibrational investigation of bis (4-acetylanilinium) hexachlorostannate using DFT (B3LYP) calculation

    NASA Astrophysics Data System (ADS)

    Tarchouna, S.; Chaabane, I.; Rahaiem, A. Ben

    2016-09-01

    4-acetylanilinium was used as a ligand for the synthesis of the organic/inorganic compound bis (4-acetylanilinium) hexachlorostannate. Vibrational study in the solid state was performed by FT-Raman of the free 4-acetylanilinium ligand C8H9ON+ and by FT-IR and FT-Raman spectroscopies of the [C8H10NO]2 SnCl6 compound. The comparative analysis of the Raman spectra of the title compound with that of the free ligand was discussed. The structure of the [C8H10NO]2SnCl6 was optimized by density functional theory (DFT) using B3LYP method and shows that the calculated values obtained by B3LYP/LanL2DZ basis are in a better agreement with the experimental data reported by Song et al. (2011) [1] than those obtained by B3LYP/LanL2MB basis. The vibrational frequencies are calculated using density functional theory (DFT) with the B3LYP/LanL2DZ basis, and scaled by various factors. Root mean square (RMS) value was calculated and the small difference between experimental and calculated modes has been interpreted by intermolecular interactions in the crystal.

  3. Thermal expansion, anharmonicity and temperature-dependent Raman spectra of single- and few-layer MoSe₂ and WSe₂.

    PubMed

    Late, Dattatray J; Shirodkar, Sharmila N; Waghmare, Umesh V; Dravid, Vinayak P; Rao, C N R

    2014-06-01

    We report the temperature-dependent Raman spectra of single- and few-layer MoSe2 and WSe2 in the range 77-700 K. We observed linear variation in the peak positions and widths of the bands arising from contributions of anharmonicity and thermal expansion. After characterization using atomic force microscopy and high-resolution transmission electron microscopy, the temperature coefficients of the Raman modes were determined. Interestingly, the temperature coefficient of the A(2)(2u) mode is larger than that of the A(1g) mode, the latter being much smaller than the corresponding temperature coefficients of the same mode in single-layer MoS2 and of the G band of graphene. The temperature coefficients of the two modes in single-layer MoSe2 are larger than those of the same modes in single-layer WSe2. We have estimated thermal expansion coefficients and temperature dependence of the vibrational frequencies of MoS2 and MoSe2 within a quasi-harmonic approximation, with inputs from first-principles calculations based on density functional theory. We show that the contrasting temperature dependence of the Raman-active mode A(1g) in MoS2 and MoSe2 arises essentially from the difference in their strain-phonon coupling. PMID:24692405

  4. Raman and infrared spectra, structure, vibrational assignment, normal coordinate analysis, and ab initio calculations of trifluoromethyl isocyanate

    NASA Astrophysics Data System (ADS)

    Durig, J. R.; Guirgis, G. A.; Eltayeb, S.

    1994-07-01

    The Raman (2500 to 30 cm -1) and infrared (2500 to 60 cm 1) spectra of gaseous and solid trifluoromethyl isocyanate, CF 3NCO, have been recorded. The Raman spectrum of the liquid has also been obtained and qualitative depolarization ratios have been measured. The CNC bend has been observed in the low-frequency Raman spectrum of the gas at 130 cm -1 as a relatively strong line which is split in the spectrum of the solid. However, the CF 3 torsional mode was not observed. The infrared spectrum of CF 3NCO dissolved in liquid xenon was also obtained and the observed spectrum indicates a very small barrier to internal rotation. With the exception of the torsion, a complete assignment of the vibrational fundamentals is proposed. The structural parameters, force constants, and vibrational frequencies have been determined from ab initio calculations utilizing a variety of basis sets and the theoretical results are compared to the experimental values when appropriate. These results have been compared with the corresponding quantities obtained for some similar molecules.

  5. Progress in the Raman spectra analysis of covalently functionalized multiwalled carbon nanotubes: unraveling disorder in graphitic materials.

    PubMed

    Rebelo, Susana L H; Guedes, Alexandra; Szefczyk, Monika E; Pereira, André M; Araújo, João P; Freire, Cristina

    2016-05-14

    Raman spectroscopy is highly sensitive to the morphology and electronic structures of graphitic materials, but a convenient interpretation model has been lacking for multiwalled carbon nanotubes (MWCNTs), in particular for the discrimination of spectral changes induced by covalent functionalization. The present work describes a systematic investigation of the Raman analysis of covalently functionalized MWCNTs by diazonium chemistry and oxidation methodologies, with typically different mechanisms and reaction sites. A multi-peak deconvolution system and spectral band assignment were proposed based on the chemical and structural modifications identified by X-ray photoelectron spectroscopy, thermogravimetry, X-ray diffraction, specific surface areas and the comparative analysis of the first and second order regions of the Raman spectra. Diazonium functionalization takes place mainly in the π-system of the external sidewall, while oxidation occurs on defects and leads to structure burning. This allowed us to distinguish between spectral features related to aromaticity disruptions within the sidewalls and spectral features related to changes within the inner tubes. The model was validated extending the studies to the functionalization of MWCNTs by the Bingel reaction.

  6. IR and Raman spectra, ab initio and density functional computations of the vibrational spectra, molecular geometries and atomic charges of uracil and 5-aminouracil.

    PubMed

    Singh, J S

    2014-09-15

    Infrared (IR) and Raman spectra of uracil and 5-aminouracil have been recorded and analyzed between the region 200-4000 cm(-1). The optimized molecular geometries, atomic polar tensor (APT) charges and vibrational characteristics have been studied theoretically using restricted Hartree-Fock (RHF) and density functional theory (DFT) methods. Using the Becke's exchange in conjunction with Lee-Yang-Parr's correlation functional and Becke's three-parameter hybrid method (B3LYP), the ab initio and DFT calculations were carried out to study the optimized molecular fundamental vibrational frequencies for uracil and 5-aminouracil by employing Gaussian-03 program. The fundamental vibrational frequencies along with their corresponding intensities in IR and Raman activities and depolarization ratios of the Raman lines have also been calculated using the RHF and DFT methods employing different basis sets. In quantum chemical calculations, the most of B3LYP/6-311++G** vibrational frequencies are in the excellent agreement with available experimental assignments and helped in the reassignments of some fundamental vibrational modes. On the basis of calculated results, the assignments of some missing frequencies in the experimental study are proposed. Assuming under the Cs point group for both molecules, the distribution of normal mode of vibrations between the two species as planar (a') and non-planar (a″) are given by 25a'+11a″, of which 30 modes (21a'+9a″) correspond to the uracil moiety and 6 modes (4a'+2a″) to the NH2 group. Kekule ring stretching mode is found to be comparatively higher frequency magnitude than the mode of uracil due to the involvement of hydrogen bonding of amino group. But, the ring breathing is found to be lower frequency magnitude compared to those for uracil which could be due to mass effect of the NH2 group in place of the hydrogen atom. All other bands have also been assigned different fundamentals/overtones/combinations.

  7. Re-examination of the SiGe Raman spectra: Percolation/one-dimensional-cluster scheme and ab initio calculations

    NASA Astrophysics Data System (ADS)

    Pagès, O.; Souhabi, J.; Torres, V. J. B.; Postnikov, A. V.; Rustagi, K. C.

    2012-07-01

    We report on the detailed assignment of various features observed in the Raman spectra of SiGe alloys along the linear chain approximation (LCA), as achieved based on remarkable intensity interplays with composition between such neighboring features known from the literature but which so far have not been fully exploited. Such an assignment is independently supported by ab initio calculation of the frequencies of bond-stretching modes taking place in different local environments, which we define at one dimension (1D) for consistency with the LCA. Fair contour modeling of the SiGe Raman spectra is eventually obtained via a so-called 1D-cluster version of the phenomenological (LCA-based) percolation scheme, as originally developed for zincblende alloys, after ab initio calibration of the intrinsic Si-Si, Si-Ge, and Ge-Ge Raman efficiencies. The 1D-cluster scheme introduces a seven-oscillator [1 × (Ge-Ge), 4 × (Si-Ge), 2 × (Si-Si)] Raman behavior for SiGe, which considerably deviates from the currently accepted six-oscillator [1 × (Ge-Ge), 1 × (Si-Ge), 4 × (Si-Si)] behavior. Different numbers of Raman modes per bond are interpreted as different sensitivities to the local environment of Ge-Ge (insensitive), Si-Si (sensitive to first neighbors), and Si-Ge (sensitive to second neighbors) bond stretching. The as-obtained SiGe 1D-cluster/percolation scheme is also compared with the current version for zincblende alloys, using GaAsP as a natural reference. A marked deviation is concerned with an inversion of the like phonon branches in each multiplet. This is attributed either to the considerable Si and Ge phonon dispersions (Si-Si doublet) or to a basic difference in the lattice relaxations of diamond and zincblende alloys (Si-Ge multiplet). The SiGe vs GaAsP comparison is supported by ab initio calculation of the local lattice relaxation/dynamics related to prototype impurity motifs that are directly transposable to the two crystal structures.

  8. A study of the observed shift in the peak position of olivine Raman spectra as a result of shock induced by hypervelocity impacts

    NASA Astrophysics Data System (ADS)

    Harriss, Kathryn H.; Burchell, M. J.

    2016-07-01

    Kuebler et al. (2006) identified variations in olivine Raman spectra based on the composition of individual olivine grains, leading to identification of olivine composition from Raman spectra alone. However, shock on a crystal lattice has since been shown to result in a structural change to the original material, which produces a shift in the Raman spectra of olivine grains compared with the original unshocked olivine (Foster et al. 2013). This suggests that the use of the compositional calculations from the Raman spectra, reported in Kuebler et al. (2006), may provide an incorrect compositional value for material that has experienced shock. Here, we have investigated the effect of impact speed (and hence peak shock pressure) on the shift in the Raman spectra for San Carlos olivine (Fo91) impacting Al foil. Powdered San Carlos olivine (grain size 1-10 μm) was fired at a range of impact speeds from 0.6 to 6.1 km s-1 (peak shock pressures 5-86 GPa) at Al foil to simulate capture over a wide range of peak shock pressures. A permanent change in the Raman spectra was found to be observed only for impact speeds greater than ~5 km s-1. The process that causes the shift is most likely linked to an increase in the peak pressure produced by the impact, but only after a minimum shock pressure associated with the speed at which the effect is first observed (here 65-86 GPa). At speeds around 6 km s-1 (peak shock pressures ~86 GPa), the shift in Raman peak positions is in a similar direction (red shift) to that observed by Foster et al. (2013) but of twice the magnitude.

  9. Line broadening, line shifting, and line coupling effects on N sub 2 --H sub 2 O stimulated Raman spectra

    SciTech Connect

    Bonamy, J.; Robert, D. ); Hartmann, J.M. ); Gonze, M.L.; Saint-Loup, R.; Berger, H. )

    1989-11-15

    In order to understand the influence of H{sub 2}O on the stimulated Raman {ital Q}-branch spectra of nitrogen in combusting media, an exhaustive theoretical and experimental study has been carried out. Starting from a semiclassical model, particularly convenient at high temperature, the {ital Q}-line broadening and shifting coefficients have been calculated over a wide temperature range and for a large number of lines. Stimulated Raman Spectra (SRS) measurements have allowed us to test these calculated line broadening coefficients and thus establish the high accuracy of semiclassical values. The theoretical broadening coefficients have been inverted to deduce state-to-state rotational relaxation rates by using two types of fitting laws. A partial test of the resulting {ital Q}-branch profiles has been realized at moderate pressures leading to a discrimination between these two laws. Furthermore, the effect of rotational energy transfers on collisionally narrowed profiles at higher densities has been simulated and compared with the pure N{sub 2} case.

  10. Spectroscopic and structural studies on lactose species in aqueous solution combining the HATR and Raman spectra with SCRF calculations.

    PubMed

    Márquez, María Jimena; Brizuela, Alicia Beatriz; Davies, Lilian; Brandán, Silvia Antonia

    2015-04-30

    In this work, the α and β isomers, the α-lactose monohydrate and dihydrate and the dimeric species of lactose were studied from the spectroscopic point of view in gas and aqueous solution phases combining the infrared, Horizontal Attenuated Total Reflectance (HATR) and Raman spectra with the density functional theory (DFT) calculations. Aqueous saturated solutions of α-lactose monohydrate and solutions at different molar concentrations of α-lactose monohydrate in water were completely characterized by infrared, HATR and Raman spectroscopies. For all the species in solution, the solvent effects were studied using the solvation polarizable continuum (PCM) and solvation (SM) models and, then, their corresponding solvation energies were predicted. The vibrational spectra of those species in aqueous solution were completely assigned by employing the Scaled Quantum Mechanics Force Field (SQMFF) methodology and the self-consistent reaction field (SCRF) calculations. The stabilities of all those species were studied by using the natural bond orbital (NBO), and atoms in molecules (AIM) calculations.

  11. Origin of the doublet at 1360 and 1340 cm -1 in the Raman spectra of tryptophan and related compounds

    NASA Astrophysics Data System (ADS)

    Harada, Issei; Miura, Takashi; Takeuchi, Hideo

    Raman spectra of indole, skatole, tryptophan and its derivatives including C 4-monodeuterated tryptophan were studied with special attention to the origin of the band around 1350 cm -1. The band is observed as a doublet or triplet depending on the compound and solvent, which was ascribed to Fermi resonance between one fundamental and one or two combination bands of the out-of-plane bending vibrations. Removal of the interaction is seen for C 4D-tryptophan and some solutions of skatole. The assignments of the component vibrations were made based on the shifts in frequencies upon C 4-deuteration. In tryptophan derivatives the doublet (or triplet) peaks exhibit steep changes in relative intensity at the p K a points of the dissociable groups, which is ascribed as arising from slight frequency shifts of a p K a-sensitive component vibration. Relations between the relative intensity and environment of indole were obtained and their possible applicability to the analyses of Raman spectra of proteins is suggested.

  12. Effects of central metal on electronic structure, magnetic properties, infrared and Raman spectra of double-decker phthalocyanine

    NASA Astrophysics Data System (ADS)

    Suzuki, Atsushi; Oku, Takeo

    2016-09-01

    The effects of the central metal in double-decker metal phthalocyanine on the electronic structure, magnetic properties, and infrared and Raman spectra of the complex were investigated. Electron density distributions were delocalized on the phthalocyanine rings. The narrow energy gap and infrared peaks observed in the ultra-violet-visible-near infrared spectra of the systems were attributed to phthalocyanine ring-ring interactions the between overlapping π-orbitals on each ring. The chemical shift behavior of the phthalocyanine rings was separated by the deformation of their structure owing to nuclear magnetic interaction of the nuclear quadrupole interaction as determined by the electronic field gradient and asymmetric parameters. The magnetic parameters of principle g-tensors were dependent on the perturbation of the crystal field by the hybridization of the d-spin in the central metal conjugated with nitrogen ligands. In the case of the vanadyl system, the IR vibration modes were shifted by the soft vibration mode for resolving the symmetrical structure. Inactive Raman vibration modes arose from no-polarization on the phthalocyanine rings. Double-decker metal phthalocyanines have great advantages for the control of the magnetic mechanism for quantum spin entanglement in the relaxation process.

  13. Quantum-based Molecular Dynamics Simulations of Shock-induced Reactions with Time-resolved Raman Spectra

    NASA Astrophysics Data System (ADS)

    Cawkwell, Marc; Sanville, Edward; Coe, Joshua; Niklasson, Anders

    2012-02-01

    Shock-induced reactions in liquid hydrocarbons have been studied using quantum-based, self-consistent tight-binding (SC-TB) molecular dynamics simulations with an accurate and transferable model for interatomic bonding. Our SC-TB code LATTE enables explicit simulations of shock compression using the universal liquid Hugoniot. Furthermore, the effects of adiabatic shock heating are captured precisely using Niklasson's energy conserving extended Lagrangian Born-Oppenheimer Molecular Dynamics formalism. We have been able to perform relatively large-scale SC-TB simulations by either taking advantage of the sparsity of the density matrix to achieve O(N) performance or by using graphics processing units to accelerate O(N^3) algorithms. We have developed the capability for the on-the-fly computation of Raman spectra from the Fourier transform of the polarizability autocorrelation function via the density matrix perturbation theory of Niklasson and Challacombe. These time-resolved Raman spectra enable us compare the results of our simulations with identical diagnostics collected experimentally. We will illustrate these capabilities with a series of simulations of shock-induced reaction paths in a number of simple molecules.

  14. Raman spectra of Cu2BIICIV X4 VI magnetic quaternary semiconductor compounds with tetragonal stannite type structure

    NASA Astrophysics Data System (ADS)

    Rincón, C.; Quintero, M.; Power, Ch.; Moreno, E.; Quintero, E.; Henao, J. A.; Macías, M. A.; Morocoima, M.

    2015-05-01

    A comparative study of the Raman spectra of Cu2BIICIV S4 VI and Cu2BIICIV Se4 VI (where B = Mn or Fe) magnetic quaternary semiconductor compounds with stannite-type structure (I 4 ¯ 2m) has been done. Most of the fourteen Raman lines expected for these materials were observed in the spectra. The two strongest lines observed have been assigned to the IR inactive A11 and A12 stannite modes that originated from the motion of the S or Se anion around the Cu and CIV cations remaining at rest. The shift in the frequency of these two lines of about 150 cm-1 to lower energies observed in Cu2BIICIV Se4 VI compounds as compared to those in Cu2BIICIV S4 VI ones, can then be explained as due to the anion mass effect. Based on the fact that values of these frequencies depend mainly on anion mass and bond-stretching forces between nearest-neighbor atoms, the vibrational frequencies v ¯ (A12) and v ¯ (A12) of both modes for several Cu2BIICIV X4 VI stannite compounds (where X = S, Se, or Te) very close to the experimental data reported for these materials were calculated from a simple model that relates these stretching forces to the anion-cation bond-distances.

  15. Theoretical Study on Surface-Enhanced Raman Spectra of Water Adsorbed on Noble Metal Cathodes of Nanostructures

    NASA Astrophysics Data System (ADS)

    Wu, De-Yin; Pang, Ran; Tian, Zhong-Qun

    2016-06-01

    The observed surface-enhanced Raman scattering (SERS) spectra of water adsorbed on metal film electrodes of silver, gold, and platinum nanoparticles were used to infer interfacial water structures. The basis is the change of the electrochemical vibrational Stark tuning rates and the relative Raman intensity of the stretching and bending modes. How it is not completely understood the reason why the relative Raman intensity ratio of the bending and stretching vibrations of interfacial water increases at the very negative potential region. Density functional theory calculations provide the conceptual model. The specific enhancement effect for the bending mode was closely associated with the water adsorption structure in a hydrogen bonded configuration through its H-end binding to surface sites with large polarizability due to strong cathodic polarization. The present theoretical results allow us to propose that interfacial water molecules exist on these metal cathodes with different hydrogen bonding interactions, the HO-H…Ag(Au) for silver and gold. In acidic solution, a surface electron-hydronium ion-pair was proposed as an adsorption configuration of interfacial water structures on silver and gold cathodes based on density functional theory (DFT) calculations. The EHIP is in the configuration of H3O+(H2O)ne-, where the hydronium H3O+ and the surface electron is separated by water layers. The electron bound in the EHIP can first be excited under light irradiation, subsequently inducing a structural relaxation into a hydrated hydrogen atom. Thus, Raman intensities of the interfacial water in the EHIP species are signifcantly enhanced due to the cathodic polarization on silver and gold electrodes.

  16. FTIR and Raman spectra, DFT and normal coordinate computations of 2,4,5- and 2,4,6-tri-fluoroanilines

    NASA Astrophysics Data System (ADS)

    Mukherjee, V.; Singh, N. P.; Yadav, R. A.

    2009-07-01

    FTIR and Raman spectra of the 2,4,5- and 2,4,6-tri-fluoroaniline molecules have been reported. Density functional method has been employed to calculate the optimized geometrical parameters, atomic charges and vibrational frequencies. In addition, SQM force field method has also been employed to calculate potential energy distribution matrix. The observed and calculated IR and Raman spectra have been simulated. Each normal mode has been assigned using observed and calculated vibrational frequencies, IR and Raman intensities, depolarization ratios for the Raman lines, vector displacements and potential energy distributions. Optimized geometrical parameters, atomic charges and vibrational frequencies have been compared for the title molecules. The influences of presence of fluorine atoms to the geometries and normal modes of the aniline molecule have also been discussed.

  17. Experimental and density functional theory study of Raman and SERS spectra of 5-amino-2-mercaptobenzimidazole

    NASA Astrophysics Data System (ADS)

    Chen, Yufeng; Yang, Jin; Li, Zonglong; Li, Ran; Ruan, Weidong; Zhuang, Zhiping; Zhao, Bing

    2016-01-01

    Raman spectroscopy, surface-enhanced Raman spectroscopy (SERS) and density functional theory (DFT) simulations were employed to study 5-amino-2-mercaptobenzimidazole (5-A-2MBI) molecules. Ag colloids were used as SERS substrates which were prepared by using hydroxylamine hydrochloride as reducing agent. Raman vibration modes and SERS characteristic peaks of 5-A-2MBI were assigned with the aid of DFT calculations. The molecular electrostatic potential (MEP) of 5-A-2MBI was used to discuss the possible adsorption behavior of 5-A-2MBI on Ag colloids. The spectral analysis showed that 5-A-2MBI molecules were slightly titled via the sulfur atoms adhering to the surfaces of Ag substrates. The obtained SERS spectral intensity decreased when lowering the 5-A-2MBI concentrations. A final detection limit on the concentration of 5 × 10- 7 mol · L- 1 was gained. SERS proved to be a simple, fast and reliable method for the detection and characterization of 5-A-2MBI molecules.

  18. Raman and infrared spectra, normal coordinate analysis and ab initio calculations of 4-Amino-2-chloropyrimidine-5-carbonitrile

    NASA Astrophysics Data System (ADS)

    Abuelela, Ahmed M.; Mohamed, Tarek A.; Wilson, Lee D.; Zoghaib, Wajdi M.

    2016-07-01

    The present work reports an experimental and theoretical study of molecular structure of 4-Amino-2-chloropyrimidine-5-carbonitrile (ACPC) in solid phase. Raman and infrared (IR) spectra of ACPC have been recorded in the region of 3600-100 cm-1 and 4000-200 cm-1, respectively. Calculations with the methods of B3LYP and Møller-Plesset second perturbation (MP2) were carried out for structural and vibrational predictions. The computational approaches were tested and adapted by comparing the predicted spectra to results obtained experimentally. In order to assign the calculated frequencies for the recorded ones, a normal coordinate analysis has been performed for vibrations with respect to the nuclei displacements for all the fundamental frequencies. By computing and analyzing, in detail, the infrared and Raman spectra of ACPC, the changes in the vibrational features were probed by identifying two tautomers of ACPC; (i) amino ACPC which could exist in two conformational structures, and (ii) imino ACPC which could exist in four conformational structures. Both computational and spectral results were in favor of the amino tautomer with no evidence for the existence of interconversion between amino and imino forms. Moreover, only one of the amino ACPC conformers was found to be the most stable one where the hybridization of amino group was found to be sp3. The theoretical predictions agree well with the available experimental data, accounting for the interconversion process in the amino/imino functional groups. We demonstrate that vibrational spectroscopy constitutes a powerful tool for studying molecular structure due to its high sensitivity to changes in molecular geometry.

  19. FT-IR, FT-Raman spectra, density functional computations of the vibrational spectra and molecular geometry of butylated hydroxy toluene.

    PubMed

    Babu, P Chinna; Sundaraganesan, N; Dereli, Ö; Türkkan, E

    2011-08-01

    The FT-IR spectrum of 2,6-di-tert-butyl-4-methylphenol [butylated hydroxy toluene] was recorded in the region 4000-400 cm(-1). The FT-Raman spectrum of butylated hydroxy toluene was also recorded in the region 3500-50 cm(-1). The molecular structure and vibrational frequencies of butylated hydroxy toluene (BHT) have been investigated with combined experimental and theoretical study. Two stable conformers of the title compound were obtained from the result of geometry optimizations of these possible conformers. The conformer 1 is (approximately 2.6 kcal/mol) more stable than conformer 2. Geometry optimizations and vibrational frequency calculations were performed by BLYP and B3LYP methods using 6-31G(d), 6-31G(d,p) and 6-31+G(d,p) as basis sets. The scaled frequencies were compared with experimental spectrum and on the basis of this comparison; assignments of fundamental vibrational modes were examined. Comparison of the experimental spectra with harmonic vibrational wavenumbers indicates that B3LYP/6-31G(d) results are more accurate. Predicted electronic absorption spectra of BHT from TD-DFT calculation have been analyzed and compared with the experimental UV-vis spectrum. The calculated HOMO and LUMO energies show that the charge transfer occurs within the molecule.

  20. The effect of laser wavelength on the Raman Spectra of phenanthrene, chrysene, and tetracene: implications for extra-terrestrial detection of polyaromatic hydrocarbons.

    PubMed

    Alajtal, A I; Edwards, H G M; Elbagerma, M A; Scowen, I J

    2010-06-01

    Raman spectroscopy, with visible laser (514 and 633 nm) and near infrared (785 and 1064 nm) excitation, has been used to obtain high quality spectra of phenanthrene, chrysene, and tetracene. Samples with dimensions from a minimum size of 10 microm have been analyzed utilizing a Raman microprobe fitted with a charge-coupled device (CCD) array detector and a FT-Raman instrument. Fluorescence is observed for samples using visible 514, 633 and near infrared 785 nm excitation but most of the samples can be measured with a near infrared 1064 nm Nd:YAG laser.

  1. The effect of laser wavelength on the Raman Spectra of phenanthrene, chrysene, and tetracene: Implications for extra-terrestrial detection of polyaromatic hydrocarbons

    NASA Astrophysics Data System (ADS)

    Alajtal, A. I.; Edwards, H. G. M.; Elbagerma, M. A.; Scowen, I. J.

    2010-06-01

    Raman spectroscopy, with visible laser (514 and 633 nm) and near infrared (785 and 1064 nm) excitation, has been used to obtain high quality spectra of phenanthrene, chrysene, and tetracene. Samples with dimensions from a minimum size of 10 μm have been analyzed utilizing a Raman microprobe fitted with a charge-coupled device (CCD) array detector and a FT-Raman instrument. Fluorescence is observed for samples using visible 514, 633 and near infrared 785 nm excitation but most of the samples can be measured with a near infrared 1064 nm Nd:YAG laser.

  2. Ultraviolet Raman spectra of single uncoated and SiO2-coated silicon-on-insulator nanowires: Phonon boundary scattering, wave-vector relaxation and stress

    NASA Astrophysics Data System (ADS)

    Poborchii, Vladimir; Tada, Tetsuya; Morita, Yukinori; Kanayama, Toshihiko

    2013-10-01

    We study Raman spectra of single straight Si-on-insulator (SOI) nanowires (NWs) at the 364 nm excitation wavelength. Uncoated SOI NW Raman band downshift and asymmetric broadening appeared to be smaller than those reported for NW ensembles, where these effects are enhanced due to additional wave-vector relaxation associated with NW imperfections. We observe NW-diameter-inversely proportional symmetric Raman band broadening associated with the phonon boundary scattering (PBS). NW longitudinal optical phonon lifetime and mean free path are determined from the PBS band broadening. SiO2-coated NWs display stress transforming from tensile to compressive with a decrease in the NW width.

  3. FT-IR and Raman spectra, ab initio and density functional computations of the vibrational spectra, molecular geometries and atomic charges of uracil and 5-methyluracil (thymine).

    PubMed

    Singh, J S

    2015-02-25

    FT-IR (400-4000 cm(-1)) and Raman spectra (200-4000 cm(-1)) of uracil and 5-methyluracil (thymine) have been recorded and analyzed. The optimized molecular geometries, atomic polar tensor (APT) charges and vibrational characteristics have been studied theoretically using restricted Hartree-Fock (RHF) and density functional theory (DFT) methods. Using the Becke's exchange in conjunction with Lee-Yang-Parr's correlation functional and Becke's three-parameter hybrid method (B3LYP), the ab initio and DFT calculations were carried out to study the optimized molecular fundamental vibrational frequencies for uracil and 5-methyluracil (thymine) by employing Gaussian-03 program. The fundamental vibrational frequencies along with their corresponding intensities in IR and Raman activities and depolarization ratios of the Raman lines have also been calculated using the RHF and DFT methods employing different basis sets. In quantum chemical calculations, most of the B3LYP/6-311++G(∗∗) vibrational frequencies are in excellent agreement with the available experimental assignments and helped to propose in the reassignments of some missing frequencies in experimental study. Assuming under the Cs point group for both molecules, the distribution of normal mode of vibrations between the two species as planar (a') and non-planar (a″) for all 39 normal vibrational modes of 5-methyluracil are given by 26a'+13a″, of which 30 modes (21a'+9a″) correspond to the uracil moiety and 9 modes (5a'+4a″) to the CH3 group. Consistent assignments have been made for the internal modes of CH3 group, especially for the anti-symmetric CH3 stretching and bending modes. A possible explanation could be the planarity of pyrimidine ring and non-planarity at carbon site of methyl group which might cause the splitting of frequencies including three components due to the substitution of CH3 group at the site of C5 atom on pyrimidine ring of uracil. The three non-equivalent CH bonds of CH3 group are

  4. Raman Spectra Study and the Corresponding Strain Dependence of Graphyne and Graphdiyne

    NASA Astrophysics Data System (ADS)

    Zhang, Shuqing; College of Chemistry; Molecular Engineering Team

    Graphynes, composed ofsp-sp2 carbon atoms, have attracted increasing interest of research due to particular optical, electrical and mechanical properties they might have. According to recent theoretical studies prediction, the systhesis of graphyne and graphdiyne are difficult but offer more possible compared to other graphynes, and they have been tried to form and got initial achievement1. For new materials, their widespread application is impossible without a convinient, fast, non-destructive characterization tool. Raman spectroscopy has performed remarkable ability for studing the properties of sp2 and sp3 carbon materials, such as diamond, graphite, carbon fibers and nanotubes. Naturally, we may expect it is also work in sp-sp2 carbon materials2. In our work, the Raman features of graphyne and graphdiyne are studied systematically and their variations versus mechanical strain are also investigated by group theory and first-principles calculations. 1. Guoxing Li, et al. Chem. Commun. 2010, 46: 3256 2. Jinying Wang*, Shuqing Zhang*, et al. Phys. Chem. Chem. Phys.2014, 16 (23): 11303

  5. High-pressure Raman study of vibrational spectra in crystalline acetanilide

    NASA Astrophysics Data System (ADS)

    Sakai, Masamichi; Kuroda, Noritaka; Nishina, Yuichiro

    1993-01-01

    We have studied the effect of pressure on the low-frequency lattice modes and the amide-I (N-CO stretching) vibrational modes in crystalline acetanilide (C6H5NHCOCH3) in the temperature range 80-300 K by means of Raman spectroscopy. The Raman intensity of the 1650-cm-1 band, which appears upon cooling, is enhanced by applying pressure. The energy difference between the amide-I phonon (Ag mode) and the 1650-cm-1 bands does not change appreciably under pressure up to at least 4 GPa. These results are analyzed in terms of the self-trapped model in which a single lattice mode couples with the amide-I excitation by taking into account the effect of pressure on the low-frequency lattice modes and on the dipole-dipole interactions associated with the amide-I vibration. A band is observed at 30 cm-1 below the amide-I phonon band at low temperatures with a pressure above ~2 GPa.

  6. Davydov Splitting and Excitonic Resonance Effects in Raman Spectra of Few-Layer MoSe2.

    PubMed

    Kim, Kangwon; Lee, Jae-Ung; Nam, Dahyun; Cheong, Hyeonsik

    2016-08-23

    Raman spectra of few-layer MoSe2 were measured with eight excitation energies. New peaks that appear only near resonance with various exciton states are analyzed, and the modes are assigned. The resonance profiles of the Raman peaks reflect the joint density of states for optical transitions, but the symmetry of the exciton wave functions leads to selective enhancement of the A1g mode at the A exciton energy and the shear mode at the C exciton energy. We also find Davydov splitting of intralayer A1g, E1g, and A2u modes due to interlayer interaction for some excitation energies near resonances. Furthermore, by fitting the spectral positions of interlayer shear and breathing modes and Davydov splitting of intralayer modes to a linear chain model, we extract the strength of the interlayer interaction. We find that the second-nearest-neighbor interlayer interaction amounts to about 30% of the nearest-neighbor interaction for both in-plane and out-of-plane vibrations. PMID:27479147

  7. Synthetic organic pigments of the 20th and 21st century relevant to artist's paints: Raman spectra reference collection

    NASA Astrophysics Data System (ADS)

    Scherrer, Nadim C.; Stefan, Zumbuehl; Francoise, Delavy; Annette, Fritsch; Renate, Kuehnen

    2009-08-01

    Some 170 organic pigments relevant to artist's paints have been collected from historic collections and modern manufacturers. The number includes multiples of the same pigment from different sources and comprises 118 different color indices (C.I.). All of them have been analysed with FTIR spectroscopy and 125 pigments (93 different C.I. No.s) of particular relevance to artist's paints have been characterised with Raman spectroscopy so far. The pigment collection encompasses the following pigment classes and subgroups: monoazo pigments represented by acetoacetic arylide yellow (hansa yellow), β-naphthol, BON, naphthol AS and benzimidazolone; disazo pigments with disazo condensation, diarylide, bisacetoacetarylide, pyrazolone; azo-azomethin metal complex pigments; non-azo, polycyclic pigments such as phthalocyanines, diketopyrrolo-pyrroles (DPP), perylenes and perinones, quinacridones, isoindolinones, polycarbocyclic anthraquinones and dioxanines. The selection of references was based on availability (historic collections) and current use in 16 acrylic, alkyd and oil-based artist's paints, and it covers pigment colors PY yellow (27 C.I. No.s), PR red (38), PO orange (9), PB blue (8), PV violet (6), PG green (3) and PBr brown (2). Besides peak tables and spectra patterns, flow charts based on color, pigment class, group and individual color index are presented to help identification of unknowns and mixed paint samples. While Raman could isolate all different C.I. numbers, multiple references of the same C.I. from different sources could not be distinguished.

  8. The 2ν{sub 3} Raman overtone of sulfur hexafluoride: Absolute spectra, pressure effects, and polarizability properties

    SciTech Connect

    Chrysos, M. Rachet, F.; Kremer, D.

    2014-03-28

    Of the six normal vibrations of SF{sub 6}, ν{sub 3} has a key role in the mechanisms of radiative forcing. This vibration, though inactive in Raman, shows up through the transition 2ν{sub 3} allowing for a complementary view on the asymmetric stretch of the molecule. Here, we look back into this topic, which has already caught some interest in the past but with some points been left out. We make a systematic incoherent-light-scattering analysis of the overtone with the use of different gas pressures and polarization orientations for the incident beam. Absolute-scale isotropic and anisotropic spectra are reported along with natural and pressure-induced widths and shifts, and other spectral features such as the peaks corresponding to the (experimentally indistinguishable) interfering channels E{sub g} and F{sub 2g} hitherto seen solely as two-photon IR-absorption features. We make the first-ever prediction of the SF{sub 6} polarizability second derivative with respect to the ν{sub 3}-mode coordinate and we develop a heuristic argument to explain why the superposition of the three degenerate stretching motions that are related to the ν{sub 3} mode cannot but generate a polarized Raman band.

  9. Structure-Property Relationship of CaO-MgO-SiO2 Slag: Quantitative Analysis of Raman Spectra

    NASA Astrophysics Data System (ADS)

    Park, Joo Hyun

    2013-08-01

    The quantitative structural information such as the relative abundance of silicate discrete anions (Q n units) and the concentration of three types of oxygens, viz. free-, bridging- and nonbridging oxygen can be obtained from micro-Raman spectra of the quenched CaO-SiO2-MgO glass samples. Various transport properties such as viscosity, density, and electrical conductivity can be expected as a simple linear function of "ln (Q3/Q2)," indicating that these physical properties are strongly dependent on a degree of polymerization of silicate melts. The methodology outlined in the current study can be extended to predict the physicochemical properties of silicate melts in ferrous and non-ferrous metallurgical processes.

  10. Analysis of serum from type II diabetes mellitus and diabetic complication using surface-enhanced Raman spectra (SERS)

    NASA Astrophysics Data System (ADS)

    Han, H. W.; Yan, X. L.; Dong, R. X.; Ban, G.; Li, K.

    2009-03-01

    In this paper, we show surface-enhanced Raman spectra (SERS) of serums from type II diabetes mellitus and diabetic complication (coronary disease, glaucoma and cerebral infarction), and analyze the SERS through the multivariate statistical methods of principal component analysis (PCA). In particular, we find that there exist many adenines in these serums, which maybe come from DNA (RNA) damage. The relative intensity of the band at 725±2 cm-1 assigned to adenine is higher for patients than for the healthy volunteers; therefore, it can be used as an important ‘fingerprint’ in order to diagnose these diseases. It is also shown that serums from type II diabetes mellitus group, diabetic complication group and healthy volunteers group can be discriminated by PCA.

  11. Effects of Er doping on Raman spectra and on the structural properties of YbMnO{sub 3}

    SciTech Connect

    Sattibabu, Bhumireddi; Bhatnagar, Anil K.

    2015-06-24

    Polycrystalline samples of Yb{sub 1-x}Er{sub x}MnO{sub 3} (x= 0, 0.1 and 0.2) were prepared by a solid state reaction procedure. Detailed crystal structure studies were performed using X-ray diffraction data obtained at room temperature. The application of the Rietveld method confirmed the reported hexagonal P6{sub 3}cm phase. Crystallographic parameters for the pure compounds are in agreement with those found in the literature. Changes in the lattice parameters, unit-cell volume, and polyhedral distortions observed in the compounds are explained as a function of x. Raman spectra show that the phonon peaks of Yb{sub 1-x}Er{sub x}MnO{sub 3} slightly shift to lower frequencies with doping.

  12. c-Axis Raman scattering spectra of MgB2: observation of a dirty-limit gap in the pi bands.

    PubMed

    Quilty, J W; Lee, S; Tajima, S; Yamanaka, A

    2003-05-23

    Raman scattering spectra from the ac face of thick MgB2 single crystals were measured in zz, xz, and xx polarizations. In zz and xz polarizations a threshold at around 29 cm(-1) forms in the below T(c) continuum but no pair-breaking peak is seen, in contrast to the sharp pair-breaking peak at around 100 cm(-1) in xx polarization. The zz and xz spectra are consistent with Raman scattering from a dirty superconductor while the sharp peak in the xx spectra argues for a clean system. Analysis of the spectra resolves this contradiction, placing the larger and smaller gap magnitudes in the sigma and pi bands and indicating that relatively strong impurity scattering is restricted to the pi bands.

  13. Coherent anti-Stokes Raman scattering (CARS) spectra, with resonance enhancement, of cytochrome c and vitamin B12 in dilute aqueous solution.

    PubMed

    Nestor, J; Spiro, T G; Klauminzer, G

    1976-10-01

    Coherent anti-Stokes Raman scattering (CARS) spectra have been obtained for ferrocytochrome c and cyano cobalamin in aqueous solution at millimolar concentrations, using a pair of tunable dye lasers pumped by a pulsed nitrogen laser. Resonance enhancement was obtained by tuning the omega1 laser to the visible absorption bands of the samples. The spectral features correspond to those observed in the conventional resonance Raman spectra. It appears that CARS spectroscopy, with its advantageous fluorescence rejection, can be usefully applied to biological samples by exploiting resonance enhancement. While the background scattering from water is 10 times higher than that of benzene and other aromatic solvents, it is actually at the low end of the scale for most liquids. The anomalously low background of aromatic liquids is thought to result from competition by the unusually efficient stimulated Raman scattering which they display. Off-resonance spectra for both cobalamin and cytochrome c contain negative peaks, i.e., absorption bands in the background. These are interpreted as inverse Raman processes induced by the omega1 photons in the presence of the continuum provided by the background scattering. While both CARS and the inverse Raman effect are subject to resonance enhancement, the wavelength dependence of CARS is evidently steeper.

  14. [Raman spectra study of thermal transformation of nephrite cat's eye from Sichuan province].

    PubMed

    Lu, Bao-qi; Xia, Yi-ben; Qi, Li-jian; You, Jing-lin

    2005-11-01

    Raman spectrum and X-ray powder diffraction (XRD) were used to study the process andproduct of thermal transformation of nephrite cat's eye from Sichuan province. The results indicate that upon being heated till 900 degrees C, tremolite in the nephrite cat's eye is dehydrated completely and the appearance of a new characteristic band near 671 cm(-1) indicates the form of a new product. At 1 000 degrees C, the intensity of band near 1014 cm(-1) rises obviously, and the weak bands near 573 cm(-1) and 934 cm(-1) present. Up to 1100 degrees C, the band near 1033 cm(-1) appears. All these evidences show that the final thermal transformation product is identified as Ca-Mg pyroxene which is similar to diopside both in structure and in composition. This conclusion is confirmed by XRD.

  15. Experimental and theoretical study of the infrared, Raman, and electronic spectra of two isomers of C{sub 78} of C{sub 2v} Symmetry

    SciTech Connect

    Benz, M.; Kapps, M.M.; Michel, R.H.; Fanti, M.; Orlandi, G.; Zerbetto, F.; Fowler, P.W.; Fuchs, D.; Lehner, C.

    1996-08-01

    The two C{sub 2v} isomers of C{sub 78} that satisfy the isolated-pentagon rule have been separated and studied by infrared, Raman (1064 nm excitation), and electronic spectroscopies backed up by semiempirical quantum chemical calculations. The structures have, respectively, 21 and 22 inequivalent atoms. The interplay between experiment and theory affords insight into the electronic and vibrational properties of the two molecules. In particular, through the comparison of the Raman and electronic spectra with their simulations, it is shown that the Raman spectra of the two isomers are different in nature. The spectrum of the isomer with 22 inequivalent atoms displays some preresonant character, while the spectrum of the other isomer does not. It is concluded that the properties of higher fullerenes must be treated on an individual basis, even when they share the same number of atoms and symmetry. 28 refs., 6 figs., 6 tabs.

  16. Surface enhanced Raman spectra of carbonate, hydrocarbonate, and substituted acetic acids on silver hydrosols

    NASA Astrophysics Data System (ADS)

    Kai, Sun; Chaozhi, Wan; Guangzhi, Xu

    1989-01-01

    The SERS spectra of carbonate, hydrocarbonate and several substituted acetic acids absorbed on silver hydrosols are recorded. The greatest enhancement of E' modes is shown in the spectrum of carbonate, from which the carbonate is deduced to be absorbed in an "end on" configuration, rather than flat on the surface. The spectrum of the hydrocarbonate solution shows the most enhanced bands at about 925 and 620 cm -1, which cannot be explained clearly. All the substituted acids have a most enhanced bands at about 1630 cm -1, revealing that the acids are initially adsorbed in a single bonding state through the carboxyl group. The change in the SERS spectra of the acids with time indicates that a bidentate bridging adsorbed state may be formed after some time.

  17. Signs of the Biological Effect of ~2 μm Low-Intensity Laser Radiation in Raman and Absorption Spectra of Blood

    NASA Astrophysics Data System (ADS)

    Batay, L. E.; Khodasevich, I. A.; Khodasevich, M. A.; Gorbunova, N. B.; Manina, E. Yu.

    2016-09-01

    Local exposure of experimental animals to low-intensity emission from a thulium laser (λ = 1.96 μm) leads to changes in the Raman and IR absorption spectra of blood. This indicates development of systemic effects caused by direct excitation of water molecules by radiation with wavelength ~2 μm, in particular modifi cation of the hemoglobin molecule.

  18. Resonance Raman spectra of the (2Fe-2S) clusters of the Rieske protein from thermus and phthalate dioxygenase from pseudomonas

    SciTech Connect

    Kuila, D.; Fee, J.A.; Schoonover, J.R.; Woodruff, W.H.

    1987-03-04

    In this paper a resonance Raman (RR) study of novel iron-sulfur-nitrogen clusters is described which provides evidence for an asymmetric distribution of Cys and N ligands on the cluster. The systems examined were Thermus Rieske protein (TRP) and phthalate dioxygenase (PDO) from Pseudomonas cepacia; the RR spectra of these proteins are compared to that of spinach ferredoxin (SFD).

  19. Quantum chemical calculations and analysis of FTIR, FT-Raman and UV-Vis spectra of temozolomide molecule

    NASA Astrophysics Data System (ADS)

    Bhat, Sheeraz Ahmad; Ahmad, Shabbir

    2015-11-01

    A combined experimental and theoretical study of the structure, vibrational and electronic spectra of temozolomide molecule, which is largely used in the treatment of brain tumours, is presented. FTIR (4000-400 cm-1) and FT-Raman spectra (4000‒50 cm-1) have been recorded and analysed using anharmonic frequency calculations using VPT2, VSCF and CC-VSCF levels of theory within B3LYP/6-311++G(d,p) framework. Anharmonic methods give accurate frequencies of fundamental modes, overtones as well as Fermi resonances and account for coupling of different modes. The anharmonic frequencies calculated using VPT2 and CC-VSCF methods show better agreement with the experimental data. Harmonic frequencies including solvent effects are also computed using IEF-PCM model. The magnitudes of coupling between pair of modes have been calculated using coupling integral based on 2MR-QFF approximation. Intermolecular interactions are discussed for three possible dimers of temozolomide. UV-Vis spectrum, examined in ethanol solvent, is compared with the calculated spectrum at TD-DFT/6-311++G(d,p) level of theory. The electronic properties, such as excitation energy, frontier molecular orbital energies and the assignments of the absorption bands are also discussed.

  20. Atomistic modeling of the low-frequency mechanical modes and Raman spectra of icosahedral virus capsids

    NASA Astrophysics Data System (ADS)

    Dykeman, Eric C.; Sankey, Otto F.

    2010-02-01

    We describe a technique for calculating the low-frequency mechanical modes and frequencies of a large symmetric biological molecule where the eigenvectors of the Hessian matrix are determined with full atomic detail. The method, which follows order N methods used in electronic structure theory, determines the subset of lowest-frequency modes while using group theory to reduce the complexity of the problem. We apply the method to three icosahedral viruses of various T numbers and sizes; the human viruses polio and hepatitis B, and the cowpea chlorotic mottle virus, a plant virus. From the normal-mode eigenvectors, we use a bond polarizability model to predict a low-frequency Raman scattering profile for the viruses. The full atomic detail in the displacement patterns combined with an empirical potential-energy model allows a comparison of the fully atomic normal modes with elastic network models and normal-mode analysis with only dihedral degrees of freedom. We find that coarse-graining normal-mode analysis (particularly the elastic network model) can predict the displacement patterns for the first few (˜10) low-frequency modes that are global and cooperative.

  1. Retrieval Of Cloud Pressure And Chlorophyll Content Using Raman Scattering In GOME Ultraviolet Spectra

    NASA Technical Reports Server (NTRS)

    Atlas, Robert (Technical Monitor); Joiner, Joanna; Vasikov, Alexander; Flittner, David; Gleason, James; Bhartia, P. K.

    2002-01-01

    Reliable cloud pressure estimates are needed for accurate retrieval of ozone and other trace gases using satellite-borne backscatter ultraviolet (buv) instruments such as the global ozone monitoring experiment (GOME). Cloud pressure can be derived from buv instruments by utilizing the properties of rotational-Raman scattering (RRS) and absorption by O2-O2. In this paper we estimate cloud pressure from GOME observations in the 355-400 nm spectral range using the concept of a Lambertian-equivalent reflectivity (LER) surface. GOME has full spectral coverage in this range at relatively high spectral resolution with a very high signal-to-noise ratio. This allows for much more accurate estimates of cloud pressure than were possible with its predecessors SBUV and TOMS. We also demonstrate the potential capability to retrieve chlorophyll content with full-spectral buv instruments. We compare our retrieved LER cloud pressure with cloud top pressures derived from the infrared ATSR instrument on the same satellite. The findings confirm results from previous studies that showed retrieved LER cloud pressures from buv observations are systematically higher than IR-derived cloud-top pressure. Simulations using Mie-scattering radiative transfer algorithms that include O2-O2 absorption and RRS show that these differences can be explained by increased photon path length within and below cloud.

  2. Chemometric study of Andalusian extra virgin olive oils Raman spectra: Qualitative and quantitative information.

    PubMed

    Sánchez-López, E; Sánchez-Rodríguez, M I; Marinas, A; Marinas, J M; Urbano, F J; Caridad, J M; Moalem, M

    2016-08-15

    Authentication of extra virgin olive oil (EVOO) is an important topic for olive oil industry. The fraudulent practices in this sector are a major problem affecting both producers and consumers. This study analyzes the capability of FT-Raman combined with chemometric treatments of prediction of the fatty acid contents (quantitative information), using gas chromatography as the reference technique, and classification of diverse EVOOs as a function of the harvest year, olive variety, geographical origin and Andalusian PDO (qualitative information). The optimal number of PLS components that summarizes the spectral information was introduced progressively. For the estimation of the fatty acid composition, the lowest error (both in fitting and prediction) corresponded to MUFA, followed by SAFA and PUFA though such errors were close to zero in all cases. As regards the qualitative variables, discriminant analysis allowed a correct classification of 94.3%, 84.0%, 89.0% and 86.6% of samples for harvest year, olive variety, geographical origin and PDO, respectively. PMID:27260451

  3. DFT calculation of vibrational frequencies of clusters in GaAs and the Raman spectra

    NASA Astrophysics Data System (ADS)

    Radhika Devi, V.; Shrivastava, Keshav N.

    2012-09-01

    We have calculated the vibrational frequencies of clusters of Ga and As atoms from the first principles using the density-functional theory (DFT) method and the local-density approximation (LDA). We find that the calculated value of 286.2 cm-1 for a linear cluster of Ga2As2 is very near the experimental value of 292 ± 4 cm-1. The calculated value of 289.4 cm-1 for Ga2As6 (dumb bell) cluster is indeed very near the experimental value. There are strong phonon correlations so that the cluster frequency is within the dispersion relation of the crystal LO value. There is a weak line in the experimental Raman spectrum at 268 cm-1 which is very near the value of 267.3 cm-1 calculated for the Ga2As (triangular) cluster. The weak lines corresponding to the linear bonds provide the strength to the amorphous samples. There are clusters of atoms in the glassy state of GaAs.

  4. Chemometric study of Andalusian extra virgin olive oils Raman spectra: Qualitative and quantitative information.

    PubMed

    Sánchez-López, E; Sánchez-Rodríguez, M I; Marinas, A; Marinas, J M; Urbano, F J; Caridad, J M; Moalem, M

    2016-08-15

    Authentication of extra virgin olive oil (EVOO) is an important topic for olive oil industry. The fraudulent practices in this sector are a major problem affecting both producers and consumers. This study analyzes the capability of FT-Raman combined with chemometric treatments of prediction of the fatty acid contents (quantitative information), using gas chromatography as the reference technique, and classification of diverse EVOOs as a function of the harvest year, olive variety, geographical origin and Andalusian PDO (qualitative information). The optimal number of PLS components that summarizes the spectral information was introduced progressively. For the estimation of the fatty acid composition, the lowest error (both in fitting and prediction) corresponded to MUFA, followed by SAFA and PUFA though such errors were close to zero in all cases. As regards the qualitative variables, discriminant analysis allowed a correct classification of 94.3%, 84.0%, 89.0% and 86.6% of samples for harvest year, olive variety, geographical origin and PDO, respectively.

  5. DFT calculation of vibrational frequencies of clusters in GaAs and the Raman spectra.

    PubMed

    Radhika Devi, V; Shrivastava, Keshav N

    2012-09-01

    We have calculated the vibrational frequencies of clusters of Ga and As atoms from the first principles using the density-functional theory (DFT) method and the local-density approximation (LDA). We find that the calculated value of 286.2 cm(-1) for a linear cluster of Ga(2)As(2) is very near the experimental value of 292 ± 4 cm(-1). The calculated value of 289.4 cm(-1) for Ga(2)As(6) (dumb bell) cluster is indeed very near the experimental value. There are strong phonon correlations so that the cluster frequency is within the dispersion relation of the crystal LO value. There is a weak line in the experimental Raman spectrum at 268 cm(-1) which is very near the value of 267.3 cm(-1) calculated for the Ga(2)As (triangular) cluster. The weak lines corresponding to the linear bonds provide the strength to the amorphous samples. There are clusters of atoms in the glassy state of GaAs.

  6. FT-IR and FT-Raman spectra, normal coordinate analysis and ab initio computations of Trimesic acid.

    PubMed

    Mahalakshmi, G; Balachandran, V

    2014-04-24

    The FT-IR and FT-Raman spectra have been recorded of Trimesic acid (1,3,5-benzenetricarboxylic acid, H3BTC). The molecular structure, conformational stability, geometry optimization, vibrational frequencies have been investigated. The total energy calculations of H3BTC were tried for various possible conformers. The spectra were interpreted with the aid of normal coordinate analysis based on ab initio Hartree-Fock (HF) and density functional theory (DFT/B3LYP) methods and 6-31+G(d,p) basis set level and was scaled using scale factors yielding good agreement between observed and calculated frequencies. Vibrational assignments and Natural bonding orbital (NBO) calculations are performed on the stable monomer of H3BTC using the same level of theory. Intramolecular hydrogen bond exists via COOH group gives the evidence for the formation of dimer entities in the title molecule. UV-VIS spectral analyses of H3BTC have been researched by theoretical calculations. In order to understand electronic transitions of the compound, TD-DFT calculations on electronic absorption spectra in gas phase and solvent (DMSO and Chloroform) were performed. The calculated frontier orbital energies, absorption wavelengths (λ), oscillator strengths (ƒ) and excitation energies (E) for gas phase and solvent (DMSO and Chloroform) are also illustrated. The statistical thermodynamic functions were obtained for the range of temperature 100-1000 K. Reliable vibrational modes associated with H3BTC are made on the basis of total energy distribution (TED) results obtained from scaled quantum mechanical (SQM) method. PMID:24508892

  7. The use of UV, FT-IR and Raman spectra for the identification of the newest penem analogs: Solutions based on mathematic procedure and the density functional theory

    NASA Astrophysics Data System (ADS)

    Cielecka-Piontek, J.; Lewandowska, K.; Barszcz, B.; Paczkowska, M.

    2013-02-01

    The application of ultraviolet, FT-IR and Raman spectra was proposed for identification studies of the newest penem analogs (doripenem, biapenem and faropenem). An identification of the newest penem analogs based on their separation from related substances was achieved after the application of first derivative of direct spectra in ultraviolet which permitted elimination of overlapping effects. A combination of experimental and theoretical studies was performed for analyzing the structure and vibrational spectra (FT-IR and Raman spectra) of doripenem, biapenem and faropenem. The calculations were conducted using the density functional theory with the B3LYP hybrid functional and 6-31G(d,p) basis set. The confirmation of the applicability of the DFT methodology for interpretation of vibrational IR and Raman spectra of the newest penem analogs contributed to determination of changes of vibrations in the area of the most labile bonds. By employing the theoretical approach it was possible to eliminate necessity of using reference standards which - considering the instability of penem analogs - require that correction coefficients are factored in.

  8. The use of UV, FT-IR and Raman spectra for the identification of the newest penem analogs: solutions based on mathematic procedure and the density functional theory.

    PubMed

    Cielecka-Piontek, J; Lewandowska, K; Barszcz, B; Paczkowska, M

    2013-02-15

    The application of ultraviolet, FT-IR and Raman spectra was proposed for identification studies of the newest penem analogs (doripenem, biapenem and faropenem). An identification of the newest penem analogs based on their separation from related substances was achieved after the application of first derivative of direct spectra in ultraviolet which permitted elimination of overlapping effects. A combination of experimental and theoretical studies was performed for analyzing the structure and vibrational spectra (FT-IR and Raman spectra) of doripenem, biapenem and faropenem. The calculations were conducted using the density functional theory with the B3LYP hybrid functional and 6-31G(d,p) basis set. The confirmation of the applicability of the DFT methodology for interpretation of vibrational IR and Raman spectra of the newest penem analogs contributed to determination of changes of vibrations in the area of the most labile bonds. By employing the theoretical approach it was possible to eliminate necessity of using reference standards which - considering the instability of penem analogs - require that correction coefficients are factored in. PMID:23218399

  9. Time-resolved coherent anti-Stokes Raman spectroscopy (CARS) and the measurement of vibrational spectra in shock-compressed molecular materials

    SciTech Connect

    Moore, D.S.; Schmidt, S.C.

    1990-01-01

    We present the use of coherent anti-Stokes Raman scattering (CARS) in conjunction with a two-stage light-gas gun to obtain vibrational spectra of shock-compressed liquid N{sub 2}, O{sub 2}, CO, and their mixtures. The experimental spectra are compared to spectra calculated using a semiclassical model for CARS intensities to obtain vibrational frequencies, peak Raman susceptibilities, and linewidths. The derived spectroscopic parameters suggest thermal equilibrium of the vibrational populations is established in less than a few nanoseconds after shock passage. Vibrational temperatures obtained are compared to those derived from equation-of-state calculations. Shifts in the vibrational frequencies reflect the influence of increased density and temperature on the intramolecular motion. 11 refs., 5 figs.

  10. Resonance Raman spectra of organic molecules absorbed on inorganic semiconducting surfaces: Contribution from both localized intramolecular excitation and intermolecular charge transfer excitation

    SciTech Connect

    Ye, ChuanXiang; Zhao, Yi E-mail: liangwz@xmu.edu.cn; Liang, WanZhen E-mail: liangwz@xmu.edu.cn

    2015-10-21

    The time-dependent correlation function approach for the calculations of absorption and resonance Raman spectra (RRS) of organic molecules absorbed on semiconductor surfaces [Y. Zhao and W. Z. Liang, J. Chem. Phys. 135, 044108 (2011)] is extended to include the contribution of the intermolecular charge transfer (CT) excitation from the absorbers to the semiconducting nanoparticles. The results demonstrate that the bidirectionally interfacial CT significantly modifies the spectral line shapes. Although the intermolecular CT excitation makes the absorption spectra red shift slightly, it essentially changes the relative intensities of mode-specific RRS and causes the oscillation behavior of surface enhanced Raman spectra with respect to interfacial electronic couplings. Furthermore, the constructive and destructive interferences of RRS from the localized molecular excitation and CT excitation are observed with respect to the electronic coupling and the bottom position of conductor band. The interferences are determined by both excitation pathways and bidirectionally interfacial CT.

  11. Fourier-transform infrared and Raman spectra, and ab initio calculations for cadmium- n-di-iso-propylphosphorylguanidine-di-chloride (CdDPGCl 2) complex

    NASA Astrophysics Data System (ADS)

    Téllez, Claudio A.; Hollauer, Eduardo; Felcman, Judith; Lopes, Damiana C. N.; Cattapan, Renata A.

    2002-07-01

    Cadmium- n-di-isopropylphosphorylguanidine-di-chloride (CdDPGCl 2) was synthesized in the solid phase and characterized previously. The Fourier transform infrared and Raman spectra of (CdDPGCl 2) in the solid state were recorded and analyzed. Emphasis was placed on the vibrational assignment of the [(O 2P=O{CdCl 2}HN=C)] fragment of the complete molecular structure. With the aim of assisting the vibrational assignment of the experimental spectra, a comparison with the spectra of N-di-isopropylphosphorylguanidine ligand was carried out and ab initio calculations have been performed with several effective core potentials and valence basis sets (Hay-Wadt (HW) and Stevens-Basch-Krauss (SBK)). Due to our limited computational resources, hydrogen atoms replaced the isopropyl groups. The calculated geometrical parameters showed excellent agreement with the experimental, as well as the RHF/MP2 calculated infrared wave numbers, when compared to the IR/Raman experimental wave numbers.

  12. FTIR and FT-Raman spectra, vibrational assignments and density functional theory calculations of 2,6-dibromo-4-nitroaniline and 2-(methylthio)aniline.

    PubMed

    Krishnakumar, V; Balachandran, V

    2005-06-01

    The FTIR and FT-Raman spectra of 2,6-dibromo-4-nitroaniline (2,6-DB4NA) in solid phase and 2-(methylthio)aniline (2-MTA) in liquid phase were measured. The geometry and normal vibrations have been obtained from the density functional theory (DFT) with the B3LYP method employing the 6-31G* basis set. Scale factors, which bring computational frequencies in closer agreement with the experimental data, have been calculated for predominant vibrational motions of the normal modes. The effects of the amino, bromine, nitro, thio and methyl substituents on vibrational frequencies have been investigated. The infrared and Raman spectra were also predicted from the calculated intensities. The observed and the calculated spectra were found to be in good agreement. PMID:15863052

  13. FTIR and FT-Raman spectra, vibrational assignments and density functional theory calculations of 2,6-dibromo-4-nitroaniline and 2-(methylthio)aniline

    NASA Astrophysics Data System (ADS)

    Krishnakumar, V.; Balachandran, V.

    2005-06-01

    The FTIR and FT-Raman spectra of 2,6-dibromo-4-nitroaniline (2,6-DB4NA) in solid phase and 2-(methylthio)aniline (2-MTA) in liquid phase were measured. The geometry and normal vibrations have been obtained from the density functional theory (DFT) with the B3LYP method employing the 6-31G* basis set. Scale factors, which bring computational frequencies in closer agreement with the experimental data, have been calculated for predominant vibrational motions of the normal modes. The effects of the amino, bromine, nitro, thio and methyl substituents on vibrational frequencies have been investigated. The infrared and Raman spectra were also predicted from the calculated intensities. The observed and the calculated spectra were found to be in good agreement.

  14. So-called `relaxation' mode located at 0.1 cm-1 in the low-frequency Raman spectra of ethylene glycol - acetone mixtures

    NASA Astrophysics Data System (ADS)

    Amo, Y.; Kameda, Y.; Usuki, T.

    2016-05-01

    Low frequency Raman spectra of ethylene glycol(EG) and acetone mixtures are investigated by high-resolution double monochrometer. A broad peak located at 0.1 cm-1 in susceptibility spectra is compared with the dielectric loss spectra. Both Raman relaxation time(τMRT1) and dielectric relaxation time(τD1) are determined by the model fitting method. The ratio τMRT1/τD1 does not depend on static dielectric constant of mixtures and is almost constant, ≈3.2, from 1.0 (pure EG) to 0.3 mole fraction. This result indicates that both τMRT1 and τD1 are determined by the same molecular dynamics.

  15. Molecular structure, natural bond analysis, vibrational and electronic spectra, surface enhanced Raman scattering and Mulliken atomic charges of the normal modes of [Mn(DDTC)2] complex.

    PubMed

    Téllez S, Claudio A; Costa, Anilton C; Mondragón, M A; Ferreira, Glaucio B; Versiane, O; Rangel, J L; Lima, G Müller; Martin, A A

    2016-12-01

    Theoretical and experimental bands have been assigned for the Fourier Transform Infrared and Raman spectra of the bis(diethyldithiocarbamate)Mn(II) complex, [Mn(DDTC)2]. The calculations have been based on the DFT/B3LYP method, second derivative spectra and band deconvolution analysis. The UV-vis experimental spectra were measured in acetonitrile solution, and the calculated electronic spectrum was obtained using the TD/B3LYP method with 6-311G(d, p) basis set for all atoms. Charge transfer bands and those d-d spin forbidden were assigned in the UV-vis spectrum. The natural bond orbital analysis was carried out using the DFT/B3LYP method and the Mn(II) hybridization leading to the planar geometry of the framework was discussed. Surface enhanced Raman scattering (SERS) was also performed. Mulliken charges of the normal modes were obtained and related to the SERS enhanced bands. PMID:27344520

  16. Molecular structure, natural bond analysis, vibrational and electronic spectra, surface enhanced Raman scattering and Mulliken atomic charges of the normal modes of [Mn(DDTC)2] complex.

    PubMed

    Téllez S, Claudio A; Costa, Anilton C; Mondragón, M A; Ferreira, Glaucio B; Versiane, O; Rangel, J L; Lima, G Müller; Martin, A A

    2016-12-01

    Theoretical and experimental bands have been assigned for the Fourier Transform Infrared and Raman spectra of the bis(diethyldithiocarbamate)Mn(II) complex, [Mn(DDTC)2]. The calculations have been based on the DFT/B3LYP method, second derivative spectra and band deconvolution analysis. The UV-vis experimental spectra were measured in acetonitrile solution, and the calculated electronic spectrum was obtained using the TD/B3LYP method with 6-311G(d, p) basis set for all atoms. Charge transfer bands and those d-d spin forbidden were assigned in the UV-vis spectrum. The natural bond orbital analysis was carried out using the DFT/B3LYP method and the Mn(II) hybridization leading to the planar geometry of the framework was discussed. Surface enhanced Raman scattering (SERS) was also performed. Mulliken charges of the normal modes were obtained and related to the SERS enhanced bands.

  17. Vitrinite reflectance and Raman spectra of carbonaceous material as indicators of frictional heating on faults: Constraints from friction experiments

    NASA Astrophysics Data System (ADS)

    Furuichi, Hiroyuki; Ujiie, Kohtaro; Kouketsu, Yui; Saito, Tsubasa; Tsutsumi, Akito; Wallis, Simon

    2015-08-01

    Vitrinite reflectance (Ro) and Raman spectra of carbonaceous material (RSCM) are both widely used as indicators of the maximum attained temperatures in sedimentary and metamorphic rocks. However, the potential of these methods to estimate temperature increases associated with fault slip has not been closely studied. To examine this issue, friction experiments were conducted on a mixture of powdered clay-rich fault material and carbonaceous material (CM) at slip rates of 0.15 mm/s and 1.3 m/s in nitrogen (N2) gas with or without distilled water. After the experiments, we measured Ro and RSCM and compared to those in starting material. The results indicate that when fault material suffers rapid heating at >500 °C in ∼9 s at 1.3 m/s, Ro and the intensity ratio of D1 and D2 Raman bands of CM (ID2/ID1) markedly increase. Comminution with very small temperature rise in ∼32 min at 0.15 mm/s is responsible for very limited changes in Ro and ID2/ID1. Our results demonstrate that Ro and RSCM could be useful for the detection of frictional heating on faults when the power density is ≥0.52 MW/m2. However, the conventionally used Ro and RSCM geothermometers are inadequate for the estimation of peak temperature during seismic fault slip. The reaction kinetics incorporating the effects of rapid heating at high slip rates and studies of the original microtexture and composition of CM are required to establish a reliable thermometer for frictional heating on faults.

  18. [Gauss-Lorentz quantitative research on O-H stretching Raman spectra of water in common chlorine salt solution].

    PubMed

    Yang, Dan; Xu, Wen-Yi

    2013-02-01

    In order to explore the Raman spectroscopy quantitative method of common cations in geological fluids, the present paper has systematically studied Raman spectra of NaCl-H2O, CaCl2-H2O, MgCl2-H2O, CuCl2-H2O, ZnCl2-H2O and FeCl3-H2O solutions by Gauss-Lorentz deconvolution integrated peaks. The results shows that: (1) there is a good quantitative relationship between the peak intensity ratio (low-frequency/high frequency) and the concentration for all systems studied, and this result provides a convenient and reliable quantitative method for quantitative analysis of these systems at room temperature. (2) In the NaCl-H2O and CaCl2-H2O and MgCl2-H2O system, with the concentration increasing, the peak intensity ratio (LF/HF) shows a declining trend , and this result suggests that the number of intermolecular hydrogen bonds is gradually reduced; however, in the CuCl2-H2O, ZnCl2-H2O and FeCl3-H2O system, the trend is on the rise; and this result suggests that the number of intermolecular hydrogen bonds is gradually increased; Such a result may be related to the complex that the transition metal ions formed in these three systems, and further studies are needed. (3) It can be seen through the slopes (that are obtained from fitting curves of the intensity ratio and the concentration in all systems) that the ability affecting of hydrogen bond of water molecules is in such order: CaCl2, MgCl2 > NaCl, FeCl3 > ZnCl2, CuCl2.

  19. Vibrational Raman spectra of hydrogen clathrate hydrates from density functional theory.

    PubMed

    Ramya, K R; Venkatnathan, Arun

    2013-03-28

    Hydrogen clathrate hydrates are promising sources of clean energy and are known to exist in a sII hydrate lattice, which consists of H2 molecules in dodecahedron (5(12)) and hexakaidecahedron (5(12)6(4)) water cages. The formation of these hydrates which occur in extreme thermodynamic conditions is known to be considerably reduced by an inclusion of tetrahydrofuran (THF) in cages of these hydrate lattice. In this present work, we employ the density functional theory with a dispersion corrected (B97-D) functional to characterize vibrational Raman modes in the cages of pure and THF doped hydrogen clathrate hydrates. Our calculations show that the symmetric stretch of the H2 molecule in the 5(12)6(4)H2·THF cage is blueshifted compared to the 5(12)6(4)H2 cage. However, all vibrational modes of water molecules are redshifted which suggest reduced interaction between the H2 molecule and water molecules in the 5(12)6(4)H2·THF cage. The symmetric and asymmetric O-H stretch of water molecules in 5(12)H2, 5(12)6(4)H2, and 5(12)6(4)H2·THF cages are redshifted compared with the corresponding guest free cages due to interactions between encapsulated H2 molecules and water molecules of the cages. The low frequency modes contain contributions from contraction and expansion of water cages and vibration of water molecules due to hydrogen bonding and these modes could possibly play an important role in the formation of the hydrate lattice.

  20. [Study on the Recognition of Liquor Age of Gujing Based on Raman Spectra and Support Vector Regression].

    PubMed

    Wang, Guo-xiang; Wang, Hai-yan; Wang, Hu; Zhang, Zheng-yong; Liu, Jun

    2016-03-01

    It is an important and difficult research point to recognize the age of Chinese liquor rapidly and exactly in the field of liquor analyzing, which is also of great significance to the healthy development of the liquor industry and protection of the legitimate rights and interests of consumers. Spectroscopy together with the pattern recognition technology is a preferred method of achieving rapid identification of wine quality, in which the Raman Spectroscopy is promising because of its little affection of water and little or free of sample pretreatment. So, in this paper, Raman spectra and support vector regression (SVR) are used to recognize different ages and different storing time of the liquor of the same age. The innovation of this paper is mainly reflected in the following three aspects. First, the application of Raman in the area of liquor analysis is rarely reported till now. Second, the concentration of studying the recognition of wine age, while most studies focus on studying specific components of liquor and studies together with the pattern recognition method focus more on the identification of brands or different types of base wine. The third one is the application of regression analysis framework, which cannot be only used to identify different years of liquor, but also can be used to analyze different storing time, which has theoretical and practical significance to the research and quality control of liquor. Three kinds of experiments are conducted in this paper. Firstly, SVR is used to recognize different ages of 5, 8, 16 and 26 years of the Gujing Liquor; secondly, SVR is also used to classify the storing time of the 8-years liquor; thirdly, certain group of train data is deleted form the train set and put into the test set to simulate the actual situation of liquor age recognition. Results show that the SVR model has good train and predict performance in these experiments, and it has better performance than other non-liner regression method such

  1. Surface-enhanced Raman scattering spectra of adsorbates on Cu2O nanospheres: charge-transfer and electromagnetic enhancement

    NASA Astrophysics Data System (ADS)

    Jiang, Li; You, Tingting; Yin, Penggang; Shang, Yang; Zhang, Dongfeng; Guo, Lin; Yang, Shihe

    2013-03-01

    Surface-enhanced Raman scattering (SERS) spectra of 4-mercaptobenzoic acid (4-MBA) have been investigated on the surface of Cu2O nanospheres. The SERS signals were believed to originate from the static chemical enhancement, resonant chemical enhancement and electromagnetic enhancement. The coupling between the adsorbates and the semiconductor, evidenced by the shift in absorption spectrum of modified Cu2O and the enhancement of non-totally symmetric modes of the 4-MBA and 4-mercaptopyridine (4-MPY) molecules, were invoked to explain the experimental results. Furthermore, simulations were employed to investigate the nature of the enhancement mechanisms operative between the molecules and the semiconductor. Density functional theory (DFT) calculations suggested a charge transfer (CT) transition process between the molecules and the Cu2O nanospheres. Three-dimensional finite-difference time domain (3D-FDTD) simulations were conducted to map out the electromagnetic field around the Cu2O nanospheres. The experimental and simulation results have revealed the promise of the Cu2O nanospheres as a good SERS substrate and the prospect of using the SERS substrate as a valuable tool for in situ investigation and assay of the adsorption behavior on semiconductor surfaces.Surface-enhanced Raman scattering (SERS) spectra of 4-mercaptobenzoic acid (4-MBA) have been investigated on the surface of Cu2O nanospheres. The SERS signals were believed to originate from the static chemical enhancement, resonant chemical enhancement and electromagnetic enhancement. The coupling between the adsorbates and the semiconductor, evidenced by the shift in absorption spectrum of modified Cu2O and the enhancement of non-totally symmetric modes of the 4-MBA and 4-mercaptopyridine (4-MPY) molecules, were invoked to explain the experimental results. Furthermore, simulations were employed to investigate the nature of the enhancement mechanisms operative between the molecules and the semiconductor

  2. [Characteristics of Raman spectra of minerals in the veins of Wenchuan earthquake fault zone].

    PubMed

    Xie, Chao; Zhou, Ben-gang; Liu, Lei; Zhou, Xiao-cheng; Yi, Li; Chen, Zhi; Cui, Yue-ju; Li, Jing; Chen, Zheng-wei; Du, Jian-guo

    2015-01-01

    Quartz in the veins at the Shenxigou section of Wenchuan earthquake fault zone was investigated by micro-Raman spectroscopic measurement, and the distribution of compressive stress in the fault zone was estimated by the frequency shifts of the 464 cm-1 vibrational mode of quartz grains in the veins. It was showed that the 464 cm-1 peak arising from the quartz grains in the veins near the fault plane shifts by 3. 29 cm-1 , and the corresponding compressive stress is 368. 63 MPa, which is significantly lower than the stress accumulation on both sides due to multi-stage events. Stress accumulation increased with moving away from the fault plane in the footwall with the offset of the 464 cm-1 peak arising from the quartz grains in the veins increasing, which can reach 494. 77 MPa at a distance of 21 m with a high offset of 4. 40 cm-1 of the 464 cm-1 peak. The compressive stress gets the maximum value of 519.87 MPa at a distance of 10 m from the fault plane in the hanging wall with the offset of the 464 cm-1 peak arising from the quartz grains in the veins being 4. 62 cm-1, followed by a sudden drop in stress accumulation, and it drops to 359. 59 MPa at a distance of 17 m. Because of moving away from the foult plane at the edge of the foult zone, the stress drops to 359. 59 MPa with a small value of 464 cm-1 peak offset 3. 21 cm-1 at a distance of 27 m from the fault plane in the hanging wall due to the little effect by the fault activity. Therefore, the stress of Wenchuan earthquake fault zone is partially released, but the rest of the stress distribution is uneven, and there is also a high stress accumulation in somewhere in the fault zone, which reflects that the mechanical properties of the rocks in the fault zone have a characteristic of unevenness in space.

  3. [Characteristics of Raman spectra of minerals in the veins of Wenchuan earthquake fault zone].

    PubMed

    Xie, Chao; Zhou, Ben-gang; Liu, Lei; Zhou, Xiao-cheng; Yi, Li; Chen, Zhi; Cui, Yue-ju; Li, Jing; Chen, Zheng-wei; Du, Jian-guo

    2015-01-01

    Quartz in the veins at the Shenxigou section of Wenchuan earthquake fault zone was investigated by micro-Raman spectroscopic measurement, and the distribution of compressive stress in the fault zone was estimated by the frequency shifts of the 464 cm-1 vibrational mode of quartz grains in the veins. It was showed that the 464 cm-1 peak arising from the quartz grains in the veins near the fault plane shifts by 3. 29 cm-1 , and the corresponding compressive stress is 368. 63 MPa, which is significantly lower than the stress accumulation on both sides due to multi-stage events. Stress accumulation increased with moving away from the fault plane in the footwall with the offset of the 464 cm-1 peak arising from the quartz grains in the veins increasing, which can reach 494. 77 MPa at a distance of 21 m with a high offset of 4. 40 cm-1 of the 464 cm-1 peak. The compressive stress gets the maximum value of 519.87 MPa at a distance of 10 m from the fault plane in the hanging wall with the offset of the 464 cm-1 peak arising from the quartz grains in the veins being 4. 62 cm-1, followed by a sudden drop in stress accumulation, and it drops to 359. 59 MPa at a distance of 17 m. Because of moving away from the foult plane at the edge of the foult zone, the stress drops to 359. 59 MPa with a small value of 464 cm-1 peak offset 3. 21 cm-1 at a distance of 27 m from the fault plane in the hanging wall due to the little effect by the fault activity. Therefore, the stress of Wenchuan earthquake fault zone is partially released, but the rest of the stress distribution is uneven, and there is also a high stress accumulation in somewhere in the fault zone, which reflects that the mechanical properties of the rocks in the fault zone have a characteristic of unevenness in space. PMID:25993832

  4. Raman spectra of nitrogen-containing organic compounds obtained in high altitude sites using a portable spectrometer: Possible application for remote robotic Titan studies

    NASA Astrophysics Data System (ADS)

    Jehlicka, Jan; Culka, Adam; Edwards, Howell G. M.

    2010-04-01

    Well-resolved Raman spectra of examples of nitrogen-containing compounds were detected using a portable Raman instrument (Ahura First Defender XL) outdoors at a low temperature of -15 °C at an altitude of 2860 m (Pitztall, Austria). The portable Raman spectrometer tested here is equipped with a 785 nm diode laser and fixed frontal probe. Solid forms of formamide, urea, 3-methylpyridine, aniline, indene, 1-(2-aminoethyl)piperazine, benzofuran and indoline were detected unambiguously under field high-mountain conditions. The main Raman features (strong, medium and partially weak bands) were observed at their correct wavenumber positions (spectral resolution 7-10 cm -1) in the range 200-2000 cm -1. The results obtained demonstrate the possibility of applying a miniaturised Raman spectrometer as key instrument for investigating the presence of nitrogen-containing organic compounds and biomolecules under low temperature field conditions. Within the payload designed by ESA and NASA for future missions focusing not only on Mars, Raman spectroscopy will be an important non-destructive analytical tool for the in-situ identification of both organic and inorganic compounds relevant to life detection on planetary surfaces or near sub-surfaces.

  5. Analysis of the Raman spectra of Ca(2+)-dipicolinic acid alone and in the bacterial spore core in both aqueous and dehydrated environments.

    PubMed

    Kong, Lingbo; Setlow, Peter; Li, Yong-qing

    2012-08-21

    The core of dormant bacterial spores suspended in water contains a large depot of dipicolinic acid (DPA) chelated with divalent cations, predominantly Ca(2+) (CaDPA), and surrounded by water molecules. Since the intensities of the vibration bands of CaDPA molecules depend significantly on the water content in the CaDPA's environment, the Raman spectra of CaDPA in spores may allow the determination of the spore core's hydration state. We have measured Raman spectra of single spores of three Bacillus species in different hydration states including the spores suspended in water, air-dried and vacuum-dried. As a comparison, we also measured the Raman spectra of CaDPA and DPA in different forms including in aqueous solution, and as amorphous powder and crystalline form. We also monitored changes in Raman spectra of an individual spore during dehydration under vacuum. The results indicated that (1) the state of CaDPA in the core of a spore suspended in water is close to an amorphous solid or a glassy state, but still mixed with water molecules; (2) the ratio of intensities of Raman bands at 1575 and 1017 cm(-1) (I(1575)/I(1017)) is sensitive to the water content in the CaDPA's environment; (3) variations in I(1575)/I(1017) are small (∼4%) in a population of dormant Bacillus spores suspended in water; and (4) the I(1575)/I(1017) ratio increases significantly during dehydration under vacuum. Consequently, measurement of the I(1575)/I(1017) ratio of CaDPA in spores may allow a qualitative estimation of the degree of hydration of the bacterial spore's core. PMID:22763367

  6. The biomolecule of 5-bromocytosine: FT-IR and FT-Raman spectra and DFT calculations. Identification of the tautomers in the isolated state and simulation the spectra in the solid state.

    PubMed

    Alcolea Palafox, M; Rastogi, V K; Kumar, Satendra; Joe, Hubert

    2013-07-01

    An accurate assignment of the IR spectrum in Ar matrix of 5-bromocytosine and of the IR and Raman spectra in the solid state was carried out. For this purpose Density functional calculations (DFTs) were performed to clarify wavenumber assignments of the experimental observed bands. The calculated values were scaled using scaling equations and they were compared with IR and Raman experimental data. Good reproduction of the experimental wavenumbers is obtained and the% error is very small in the majority of cases. In the isolated state all the tautomer forms of 5-bromocytosine were determined and optimized. The wavenumbers corresponding to C1 and C2b tautomers were identified and assigned in the IR experimental spectrum reported in Ar matrix. Our study confirms the existence of at least two tautomers, the amino-oxo and the amino-hydroxy in the isolated state. In the solid state the FT-IR and FT-Raman spectra of 5-bromocytosine in the powder form were recorded in the region 400-4000 cm(-1) and 50-3500 cm(-1), respectively. The unit cell found in the crystal was simulated as a tetramer form in three tautomers. Thus, it has been possible to assign all the 33 normal modes of vibration. The study indicates that the features, that are the characteristic of the vibrational spectra of cytosine, are retained by the spectra of 5-bromocytosine and it exists in the solid phase in the amino-oxo form.

  7. Simulation of the EXAFS and Raman spectra of InxGa1-xN utilizing the equation of motion routine of FEFF8.

    NASA Astrophysics Data System (ADS)

    Katsikini, M.; Pinakidou, F.; Paloura, E. C.; Arvanitidis, J.; Ves, S.; Reinholz, U.; Papadomanolaki, E.; Iliopoulos, E.

    2016-05-01

    A combined analysis of EXAFS and Raman spectra is applied for the study of InxGa1-xN alloys with 0.3Raman spectra that resemble the vibrational density of states. On the other hand, theoretical simulation of the Raman spectra using the Equation of Motion routine of FEFF8 provides the vibrational component of the Debye-Waller factor (DWF). The static disorder component of the DWFs was obtained by fitting the Ga and In K-edge EXAFS spectra. The analysis revealed that the nearest neighbor distances of the 1st and 2nd shell deviate from the values predicted by the law of Vegard and the virtual crystal approximation. The static disorder in the first nearest neighboring shell (In-N and Ga-N) is null whereas in the cation-cation neighboring shells the static component is generally smaller than the vibrational.

  8. FT-IR and FT-Raman spectra of 5-fluoroorotic acid with solid state simulation by DFT methods

    NASA Astrophysics Data System (ADS)

    Cuellar, A.; Alcolea Palafox, M.; Rastogi, V. K.; Kiefer, W.; Schlücker, S.; Rathor, S. K.

    2014-11-01

    FT-Raman and FT-IR studies of the biomolecule 5-fluoroorotic acid in the solid state were carried out. The unit cell found in the crystal was simulated as a tetramer form by density functional calculations. They were performed to clarify wavenumber assignments of the experimental observed bands in the spectra. Correlations with the molecule of uracil were made, and specific scale equations were employed to scale the wavenumbers of 5-fluoroorotic acid. Good reproduction of the experimental wavenumbers is obtained and the % error is very small in the majority of the bands. This fact confirms our simplified solid state model. The molecular structure was fully optimized using DFT and MP2 methods. The relative stability of both the syn and anti conformations was investigated, and the anti-form was found to be slightly more stable, by 7.49 kJ/mol at the MP2 level. The structures of all possible tautomeric forms were determined. The keto-form appeared as the most stable one. The NBO atomic charges and several thermodynamic parameters were also calculated.

  9. A comparative study of the infrared and Raman spectra of aniline and o-, m-, p-phenylenediamine isomers

    NASA Astrophysics Data System (ADS)

    Badawi, Hassan M.; Förner, Wolfgang; Ali, Shaikh A.

    2013-08-01

    The structural stabilities of o-, m- and p-phenylenediamine (PDA) isomers were investigated by DFT-B3LYP and ab initio MP2 calculations with the 6-311G** basis set. From the calculations the three isomers were predicted to exist predominantly in an anti (transoid) structure. In the o-isomer, the syn (cisoid) form is calculated to turn to the anti (transoid) form with the two HNCC torsional angles of about 44 and 10° and the NH2 inversion barrier of 3-4 kcal/mol. The CCNH torsional angles in the m-PDA and p-PDA isomers were calculated to be about 25-26° as compared to 20° in aniline. A comparison of the Raman spectra of the three PDA-s with those of aniline shows the high sensitivity of the ring breathing mode to the nature of substituents in the aniline ring. The vibrational wavenumbers were computed at the DFT-B3LYP for aniline and the o-, m- and p-PDA isomers for the purpose of comparison. Complete vibrational assignments were made on the basis of normal coordinate analyses and potential energy distributions for aniline and the o-, m- and p-PDA molecules.

  10. The infrared, Raman, NMR and UV spectra, ab initio calculations and spectral assignments of 2-amino-4-chloro-6-methoxypyrimidine

    NASA Astrophysics Data System (ADS)

    Cinar, Z.; Karabacak, M.; Cinar, M.; Kurt, M.; Chinna babu, P.; Sundaraganesan, N.

    2013-12-01

    The 2-amino-4-chloro-6-methoxypyrimidine abbreviated as ACMP have been investigated by both the experimental and theoretical methods; through this work we provide the essential fact about the structural and vibrational insights. The optimized molecular structure, atomic charges, vibrational frequencies and ultraviolet spectral interpretation of ACMP have been studied by performing DFT/B3LYP/6-311++G(df,pd) level of theory. The FT-IR, FT-Raman spectra were recorded in the region 4000-400 cm-1 and 4000-50 cm-1 respectively. The UV absorption spectrum of the compound that dissolved in ethanol and water solution were recorded in the range of 200-400 nm. The scaled wavenumbers are compared with the experimental values. The difference between the observed and scaled wavenumber values of most of the fundamentals is very small. Based on the UV spectrum and TD-DFT calculations, the electronic structure and the assignments of the absorption bands were carried out. The 1H, 13C and DEPT 135 nuclear magnetic resonance (NMR) chemical shifts of the molecule were calculated using with the Gauge Including Atomic Orbital (GIAO) method and compared with experimental results. Besides, molecular electrostatic potential (MEP), frontier molecular orbitals (FMO) analysis were investigated using theoretical calculations.

  11. A comparative study of the infrared and Raman spectra of aniline and o-, m-, p-phenylenediamine isomers.

    PubMed

    Badawi, Hassan M; Förner, Wolfgang; Ali, Shaikh A

    2013-08-01

    The structural stabilities of o-, m- and p-phenylenediamine (PDA) isomers were investigated by DFT-B3LYP and ab initio MP2 calculations with the 6-311G(**) basis set. From the calculations the three isomers were predicted to exist predominantly in an anti (transoid) structure. In the o-isomer, the syn (cisoid) form is calculated to turn to the anti (transoid) form with the two HNCC torsional angles of about 44 and 10° and the NH2 inversion barrier of 3-4 kcal/mol. The CCNH torsional angles in the m-PDA and p-PDA isomers were calculated to be about 25-26° as compared to 20° in aniline. A comparison of the Raman spectra of the three PDA-s with those of aniline shows the high sensitivity of the ring breathing mode to the nature of substituents in the aniline ring. The vibrational wavenumbers were computed at the DFT-B3LYP for aniline and the o-, m- and p-PDA isomers for the purpose of comparison. Complete vibrational assignments were made on the basis of normal coordinate analyses and potential energy distributions for aniline and the o-, m- and p-PDA molecules.

  12. A novel europium (III) nitridoborate Eu3[B3N6]: Synthesis, crystal structure, magnetic properties, and Raman spectra

    NASA Astrophysics Data System (ADS)

    Aydemir, Umut; Kokal, Ilkin; Prots, Yurii; Förster, Tobias; Sichelschmidt, Jörg; Schappacher, Falko M.; Pöttgen, Rainer; Ormeci, Alim; Somer, Mehmet

    2016-07-01

    A novel europium (III) nitridoborate, Eu3[B3N6], was successfully synthesized by oxidation of Eu3II[BN2]2 with Br2 at 1073 K. The compound crystallizes in the trigonal space group R 3 barc (No:167) with a=11.9370(4) Å, c=6.8073(4) Å, and Z=6. The crystal structure of Eu3[B3N6] consists of isolated, planar cyclic [B3N6]9- units which are charge-balanced by Eu3+ cations. The oxidation state of Eu was investigated by Mössbauer spectroscopy, electron spin resonance (ESR) spectroscopy, and quantum chemical calculations. The 151Eu Mössbauer spectroscopic measurement at 77 K reveals that the main signal at δ=0.93(7) mm/s is originating from trivalent Europium. Eu3[B3N6] showed no ESR signal in accordance with a non-magnetic (J=0) 7F0 ground state of the 4f6 configuration. Quantum chemical calculations find six electrons in the 4f subshell (4f6) of Eu indicating an oxidation state of +3. We present for the first time the vibrational spectra of a compound with cyclic trimer [B3N6]9- moieties. The Raman spectrum of Eu3[B3N6] is in good agreement with the predicted number of modes for the spectroscopically relevant cyclic [B3N6]9- group with D3h symmetry.

  13. Temperature induced changes in resonance Raman spectra intensity of all-trans-β-carotene: Changes in the fundamental, combination and overtone modes

    NASA Astrophysics Data System (ADS)

    Liu, Tianyuan; Xu, Shengnan; Li, Zuowei; Wang, Mengzhou; Sun, Chenglin

    2014-10-01

    The resonance Raman spectra of the fundamental, combination and overtone modes around the Csbnd C and Cdbnd C stretches of all-trans-β-carotene in 1,2-dichloroethane solution are obtained from the 293 K to 83 K temperature range. The results indicate that the intensity of the fundamentals in the liquid and solid phases generally increases as the temperature decreases, except for the liquid-solid phase transition, which exhibits a decreasing trend. The Raman intensities ratio between the fundamentals υ1 and υ2, combinations (overtones) and the fundamentals both increases with decreasing temperature. The Raman bandwidths of the Cdbnd C bonds gradually become narrow as the temperature decreases. These varieties of relative intensity are analyzed using the coherent weakly damped electron-lattice vibration mode, the effective conjugation length mode as well as the theory of electron-phonon interaction in this work.

  14. Structural and spectroscopic study of a pectin isolated from citrus peel by using FTIR and FT-Raman spectra and DFT calculations

    NASA Astrophysics Data System (ADS)

    Bichara, Laura C.; Alvarez, Patricia E.; Fiori Bimbi, María V.; Vaca, Hugo; Gervasi, Claudio; Brandán, Silvia Antonia

    2016-05-01

    In this work, pectin isolated from citrus peel with a degree of esterification of 76% was characterized by Fourier Transform Infrared (FTIR) and Fourier Transform Raman (FT-Raman) spectroscopies. Structural studies were carried out taking into account their partial degree of esterification and considering the polygalacturonic acid chain as formed by two different subunits, one with both COOH and COOsbnd CH3 groups (Ac) and the other one as constituted by two subunits with two COOsbnd CH3 groups (Es). Their structural properties, harmonic frequencies, force fields and force constants in gas and aqueous solution phases were calculated by using the hybrid B3LYP/6-31G∗ method. Then, their complete vibrational analyses were performed by using the IR and Raman spectra accomplished with the scaled quantum mechanical (SQM) methodology. Reactivities and behaviors in both media were predicted for Ac and Es by using natural bond orbital (NBO), atoms in molecules (AIM), and frontier orbitals calculations. We report for first time the complete assignments of those two different units of polygalacturonic acid chain which are the 132 normal vibration modes of Ac and the 141 normal vibration modes of Es, combining the normal internal coordinates with the SQM methodology. In addition, three subunits were also studied. Reasonable correlations between the experimental and theoretical spectra were obtained. Thus, this work would allow the quick identification of pectin by using infrared and Raman spectroscopies and also provides new insight into the interactions that exist between subunits of a large pectin chain.

  15. Difference in effect of temperature on absorption and Raman spectra between all-trans-β-carotene and all-trans-retinol

    NASA Astrophysics Data System (ADS)

    Qu, Guan-Nan; Li, Shuo; Sun, Cheng-Lin; Liu, Tian-Yuan; Wu, Yong-Ling; Sun, Shang; Shan, Xiao-Ning; Men, Zhi-Wei; Chen, Wei; Li, Zuo-Wei; Gao, Shu-Qin

    2012-12-01

    Temperature dependencies (81 °C-18 °C) ofvisible absorption and Raman spectra of all-trans-β-carotene and all-trans-retinol extremely diluted in dimethyl sulfoxide are investigated in order to clarify temperature effects on different polyenes. Their absorption spectra are identified to be redshifted with temperature decreasing. Moreover, all-trans-β-carotene is more sensitive to temperature due to the presence of a longer length of conjugated system. The characteristic energy responsible for the conformational changes in all-trans-β-carotene is smaller than that in all-trans-retinol. Both of the Raman scattering cross sections increase with temperature decreasing. The results are explained with electron—phonon coupling theory and coherent weakly damped electron—lattice vibrations model.

  16. A theoretical study on the molecular structure and vibrational (FT-IR and Raman) spectra of cyano-bridged heteronuclear polymeric complex of triethylenetetramine

    NASA Astrophysics Data System (ADS)

    Kürkçüoğlu, Güneş Süheyla; Çetinkaya, Fulya; Arslan, Taner

    The cyano bridged complex of triethylenetetramine was characterized by FT-IR, Raman spectroscopy and X-ray single crystal diffraction analysis. The molecular geometry and vibrational frequencies of the complex in the ground state have been calculated by using B3LYP density functional method with LANL2DZ basis set. A good correlation was found via comparison of the experimental and theoretical vibrational frequencies of complex. The complex of the type [Zn(teta)Ni(μ-CN)2(CN)2]n has been studied in the 4000-250 cm-1 region and assignment of all the observed bands were made. The analysis of the FT-IR and Raman spectra indicates that there are some structure spectra correlations.

  17. Microwave, infrared and Raman spectra, r0 structural parameters, ab initio calculations and vibrational assignment of 1-fluoro-1-silacyclopentane.

    PubMed

    Durig, James R; Panikar, Savitha S; Obenchain, Daniel A; Bills, Brandon J; Lohan, Patrick M; Peebles, Rebecca A; Peebles, Sean A; Groner, Peter; Guirgis, Gamil A; Johnston, Michael D

    2012-01-28

    The microwave spectrum (6500-18 ,500 MHz) of 1-fluoro-1-silacyclopentane, c-C(4)H(8)SiHF has been recorded and 87 transitions for the (28)Si, (29)Si, (30)Si, and (13)C isotopomers have been assigned for a single conformer. Infrared spectra (3050-350 cm(-1)) of the gas and solid and Raman spectrum (3100-40 cm(-1)) of the liquid have also been recorded. The vibrational data indicate the presence of a single conformer with no symmetry which is consistent with the twist form. Ab initio calculations with a variety of basis sets up to MP2(full)/aug-cc-pVTZ predict the envelope-axial and envelope-equatorial conformers to be saddle points with nearly the same energies but much lower energy than the planar conformer. By utilizing the microwave rotational constants for seven isotopomers ((28)Si, (29)Si, (30)Si, and four (13)C) combined with the structural parameters predicted from the MP2(full)/6-311+G(d,p) calculations, adjusted r(0) structural parameters have been obtained for the twist conformer. The heavy atom distances in Å are: r(0)(SiC(2)) = 1.875(3); r(0)(SiC(3)) = 1.872(3); r(0)(C(2)C(4)) = 1.549(3); r(0)(C(3)C(5)) = 1.547(3); r(0)(C(4)C(5)) = 1.542(3); r(0)(SiF) = 1.598(3) and the angles in degrees are: [angle]CSiC = 96.7(5); [angle]SiC(2)C(4) = 103.6(5); [angle]SiC(3)C(5) = 102.9(5); [angle]C(2)C(4)C(5) = 108.4(5); [angle]C(3)C(5)C(4) = 108.1(5); [angle]F(6)Si(1)C(2) = 110.7(5); [angle]F(6)Si(1)C(3) = 111.6(5). The heavy atom ring parameters are compared to the corresponding r(s) parameters. Normal coordinate calculations with scaled force constants from MP2(full)/6-31G(d) calculations were carried out to predict the fundamental vibrational frequencies, infrared intensities, Raman activities, depolarization values, and infrared band contours. These experimental and theoretical results are compared to the corresponding quantities of some other five-membered rings.

  18. Assignment of phantom bands in the solid-state infrared and Raman spectra of coronene: The importance of a minute out-of-plane distortion.

    PubMed

    Todorov, Petar D; Jenneskens, Leonardus W; van Lenthe, Joop H

    2010-01-21

    The molecular geometry and the normal modes properties of coronene are investigated by means of DFT(B3LYP) and restricted/Hartree-Fock calculations utilizing basis sets of triple zeta+polarization quality. The interpretation of the infrared and Raman spectra of coronene, especially in solid state, is critically revised. The phantom bands in the solid state, previously not understood, are readily assigned after considering a minute out-of-plane molecular distortion from D(6h) to C(2h).

  19. Near infrared excited micro-Raman spectra of 4:1 methanol-ethanol mixture and ruby fluorescence at high pressure

    NASA Astrophysics Data System (ADS)

    Wang, X. B.; Shen, Z. X.; Tang, S. H.; Kuok, M. H.

    1999-06-01

    Near infrared (NIR) lasers, as a new excitation source for Raman spectroscopy, has shown its unique advantages and is being increasingly used for some special samples, such as those emitting strong fluorescence in the visible region. This article focuses on some issues related to high-pressure micro-Raman spectroscopy using NIR excitation source. The Raman spectra of 4:1 methanol-ethanol mixture (4:1 M-E) show a linear variation in both Raman shifts and linewidths under pressure up to 18 GPa. This result is useful in distinguishing Raman scattering of samples from that of the alcohol mixture, an extensively used pressure-transmitting medium. The R1 fluorescence in the red region induced by two-photon absorption of the NIR laser is strong enough to be used as pressure scale. The frequency and line width of the R1 lines are very sensitive to pressure change and the glass transition of the pressure medium. Our results manifest that it is reliable and convenient to use NIR induced two-photon excited fluorescence of ruby for both pressure calibration and distribution of pressure in the 4:1 M-E pressure transmitting medium.

  20. Vibration wavenumbers of 3-aminobenzotrifluoride in the ground and S1 electronic states from its infrared, Raman, and supersonic jet S1- S0 fluorescence spectra

    NASA Astrophysics Data System (ADS)

    Ribeiro-Claro, Paulo J. A.; Teixeira-Dias, JoséJ. C.; Gordon, Robert D.; Hollas, J. Michael

    1991-11-01

    Raman and infrared spectra of 3-aminobenzotrifluoride, in the liquid phase, and single vibronic level fluorescence spectra, in a supersonic jet, have been obtained and interpreted to give a fairly complete set of vibrational assignments in S0. These include the observation of the I 20 band in fluorescence, where ν1 is the NH 2-inversion vibration, in agreement with a previous interpretation of the gas phase far infrared spectrum. A strong Fermi resonance between one quantum of the a'CCF 3 bending vibration and two quanta of the a″CCF 3 bending vibration has been identified in S1.

  1. Polarized infra-red and Raman spectra of monoclinic α-KLn(WO 4) 2 single crystals (Ln = Sm—Lu, Y)

    NASA Astrophysics Data System (ADS)

    Hanuza, J.; Macalik, L.

    The polarized i.r. and Raman spectra for single crystals of α-KLn(WO 4) 2 family were measured, where Ln = Y and lanthanides from Sm to Lu. The molecular and crystal structures were analysed in terms of C 2/ c = C62 h (Z = 4) monoclinic unit cell. A comparison of vibrational spectra measured for isomorphic crystals of several RE elements was used to describe the internal and external optic modes. On that basis the hexacoordination of tungsten atoms and polymeric (W 2O 10) n clusters with ? and ? bridge systems were discussed.

  2. Thermodynamic properties of cyclopentanone and cyclohexanone

    SciTech Connect

    Shvaro, O.V.; Peshchenko, A.D.; Sachek, A.I.; Markovnik, V.S.; Al'khimovich, V.M.

    1987-11-01

    The isobaric specific heats and combustion heats of vapors of cyclopentanone and cyclohexanone were measured calorimetrically. Data are also provided on vaporization heats, formation heats, entropies, and combustion properties. The test equipment and measuring apparatus are described as well as measures taken for their calibration.

  3. Organic Process Technology Valuation: Cyclohexanone Oxime Syntheses

    ERIC Educational Resources Information Center

    Cannon, Kevin C.; Breen, Maureen P.

    2010-01-01

    Three contemporary processes for cyclohexanone oxime synthesis are evaluated in a case study. The case study introduces organic chemistry students to basic cost accounting to determine the most economical technology. Technical and financial aspects of these processes are evaluated with problem-based exercises that may be completed by students…

  4. Resonance Raman Spectra of Five-Coordinate Heme-Nitrosyl Cytochromes c': Effect of the Proximal Heme-NO Environment.

    PubMed

    Servid, Amy E; McKay, Alison L; Davis, Cherry A; Garton, Elizabeth M; Manole, Andreea; Dobbin, Paul S; Hough, Michael A; Andrew, Colin R

    2015-06-01

    Five-coordinate heme nitrosyl complexes (5cNO) underpin biological heme-NO signal transduction. Bacterial cytochromes c' are some of the few structurally characterized 5cNO proteins, exhibiting a distal to proximal 5cNO transition of relevance to NO sensing. Establishing how 5cNO coordination (distal vs proximal) depends on the heme environment is important for understanding this process. Recent 5cNO crystal structures of Alcaligenes xylosoxidans cytochrome c' (AXCP) and Shewanella frigidimarina cytochrome c' (SFCP) show a basic residue (Arg124 and Lys126, respectively) near the proximal NO binding sites. Using resonance Raman (RR) spectroscopy, we show that structurally characterized 5cNO complexes of AXCP variants and SFCP exhibit a range of ν(NO) (1651-1671 cm(-1)) and ν(FeNO) (519-536 cm(-1)) vibrational frequencies, depending on the nature of the proximal heme pocket and the sample temperature. While the AXCP Arg124 residue appears to have little impact on 5cNO vibrations, the ν(NO) and ν(FeNO) frequencies of the R124K variant are consistent with (electrostatically) enhanced Fe(II) → (NO)π* backbonding. Notably, RR frequencies for SFCP and R124A AXCP are significantly displaced from the backbonding trendline, which in light of recent crystallographic data and density functional theory modeling may reflect changes in the Fe-N-O angle and/or extent of σ-donation from the NO(π*) to the Fe(II) (dz(2)) orbital. For R124A AXCP, correlation of vibrational and crystallographic data is complicated by distal and proximal 5cNO populations. Overall, this study highlights the complex structure-vibrational relationships of 5cNO proteins that allow RR spectra to distinguish 5cNO coordination in certain electrostatic and steric environments.

  5. Transient resonance Raman spectra of benzophenone and its four isotopic analogues in the lowest excited triplet state

    SciTech Connect

    Tahara, T.; Hamaguchi, H.; Tasumi, M.

    1987-11-05

    Transient resonance Raman spectra of T/sub 1/ benzophenone (T/sub 1/BP) and its four isotopic analogues in carbon tetrachloride solutions were measured. Vibrational assignments of eight T/sub 1/ bands have been made on the basis of the observed isotopic frequency shifts. The assignments clarified the following three points concerning the structure of T/sub 1/ BP in solution. (1) The CO bond order in T/sub 1/ BP is much lower than that in the ground-state benzophenone (S/sub 0/ BP). The CO stretching frequency in T/sub 1/ is found to be 1222 cm/sup -1/, whereas the corresponding value in S/sub 0/ is 1665 cm/sup -1/. The former frequency indicates a single-bond-like character of the CO bonding in the T/sub 1/ state. (2) Vibrational frequencies of several ring modes show marked downshifts in going from S/sub 0/ to T/sub 1/. This suggests the delocalization of the ..pi..* electron into the ring part. (3) The assignment (1302 cm/sup -1/) of the symmetric C-phenyl stretch mode in the T/sub 1/ withdraws S/sub 0/ absorption spectrum is questioned. According to the present assignment, the frequency of this mode (approx. 1100 cm/sup -1/) is slightly lower than that in the ground state (1150 cm/sup -1/). The simple quantum chemical picture of T/sub 1/ BP, which predicted the increase of the C-phenyl bond order with the ..pi..* withdraws n excitation, should therefore be reconsidered.

  6. Infrared and Raman spectra of the fluoroxysulfate ion, SO/sub 4/F/sup -1 -/, and of fluorine perchlorate, ClO/sub 4/F

    SciTech Connect

    Appelman, E.H.; Basile, L.J.; Kim, H.

    1982-07-01

    The infrared and Raman spectra of solid cesium and rubidium fluoroxysulfates, CsSO/sub 4/F and RbSO/sub 4/F, have been measured, along with the gas-phase spectra of the isoelectronic molecule fluorine perchlorate, ClO/sub 4/F. The spectra are consistent with a perchloric acid type structure of C/sub s/ symmetry, and the vibrational bands have been assigned with reference to the analogous species of C/sub 3..nu../ symmetry: the fluorosulfate ion, SO/sub 3/F/sup -/, and perchloryl fluoride, ClO/sub 3/F. Normal-coordinate analyses have been carried out for both ClO/sub 4/F and SO/sub 4/F/sup -/. 6 figures, 4 tables.

  7. Simulating One-Photon Absorption and Resonance Raman Scattering Spectra Using Analytical Excited State Energy Gradients within Time-Dependent Density Functional Theory

    SciTech Connect

    Silverstein, Daniel W.; Govind, Niranjan; van Dam, Hubertus J. J.; Jensen, Lasse

    2013-12-10

    A parallel implementation of analytical time-dependent density functional theory gradients is presented for the quantum chemistry program NWChem. The implementation is based on the Lagrangian approach developed by Furche and Ahlrichs. To validate our implementation, we first calculate the Stokes shifts for a range of organic dye molecules using a diverse set of exchange-correlation functionals (traditional density functionals, global hybrids, and range-separated hybrids) followed by simulations of the one-photon absorption and resonance Raman scattering spectrum of the phenoxyl radical, the well-studied dye molecule rhodamine 6G, and a molecular host–guest complex (TTFcCBPQT4+). The study of organic dye molecules illustrates that B3LYP and CAM-B3LYP generally give the best agreement with experimentally determined Stokes shifts unless the excited state is a charge transfer state. Absorption, resonance Raman, and fluorescence simulations for the phenoxyl radical indicate that explicit solvation may be required for accurate characterization. For the host–guest complex and rhodamine 6G, it is demonstrated that absorption spectra can be simulated in good agreement with experimental data for most exchange-correlation functionals. Finally, however, because one-photon absorption spectra generally lack well-resolved vibrational features, resonance Raman simulations are necessary to evaluate the accuracy of the exchange-correlation functional for describing a potential energy surface.

  8. FT-Raman, FT-IR spectra and total energy distribution of 3-pentyl-2,6-diphenylpiperidin-4-one: DFT method.

    PubMed

    Subashchandrabose, S; Saleem, H; Erdogdu, Y; Rajarajan, G; Thanikachalam, V

    2011-11-01

    FT-Raman and FT-IR spectra were recorded for 3-pentyl-2,6-diphenylpiperidin-4-one (PDPO) sample in solid state. The equilibrium geometries, harmonic vibrational frequencies, infrared and the Raman scattering intensities were computed using DFT/6-31G(d,p) level. Results obtained at this level of theory were used for a detailed interpretation of the infrared and Raman spectra, based on the total energy distribution (TED) of the normal modes. Molecular parameters such as bond lengths, bond angles and dihedral angles were calculated and compared with X-ray diffraction data. This comparison was good agreement. The intra-molecular charge transfer was calculated by means of natural bond orbital analysis (NBO). Hyperconjugative interaction energy was more during the π-π* transition. Energy gap of the molecule was found using HOMO and LUMO calculation, hence the less band gap, which seems to be more stable. Atomic charges of the carbon, nitrogen and oxygen were calculated using same level of calculation.

  9. Raman and IR studies and DFT calculations of the vibrational spectra of 2,4-Dithiouracil and its cation and anion.

    PubMed

    Singh, R; Yadav, R A

    2014-09-15

    Raman and FTIR spectra of solid 2,4-Dithiouracil (DTU) at room temperature have been recorded. DFT calculations were carried out to compute the optimized molecular geometries, GAPT charges and fundamental vibrational frequencies along with their corresponding IR intensities, Raman activities and depolarization ratios of the Raman bands for the neutral DTU molecule and its cation (DTU+) and anion (DTU-) using the Gaussian-03 software. Addition of one electron leads to increase in the atomic charges on the sites N1 and N3 and decrease in the atomic charges on the sites S8 and S10. Due to ionization of DTU molecule, the charge at the site C6 decreases in the cationic and anionic radicals of DTU as compared to its neutral species. As a result of anionic radicalization, the C5C6 bond length increases and loses its double bond character while the C4C5 bond length decreases. In the case of the DTU+ ion the IR and Raman band corresponding to the out-of-phase coupled NH stretching mode is strongest amongst the three species. The anionic DTU radical is found to be the most stable. The two NH out-of-plane bending modes are found to originate due to out-of-phase and in-phase coupling of the two NH bonds in the anion and cation contrary to the case of the neutral DTU molecule in which the out-of-plane bending motions of the two NH bonds are not coupled.

  10. From linear to cyclic oligoparaphenylenes: electronic and molecular changes traced in the vibrational Raman spectra and reformulation of the bond length alternation pattern.

    PubMed

    Peña-Alvarez, Miriam; Qiu, Lili; Taravillo, Mercedes; Baonza, Valentín G; Delgado, M Carmen Ruiz; Yamago, Shigeru; Jasti, Ramesh; Navarrete, Juan T López; Casado, Juan; Kertesz, Miklos

    2016-04-28

    Cyclic paraphenylenes, [n]CPPs, and linear paraphenylenes, [n]LPPs, formed by n benzenes, are investigated by Raman spectroscopy for n = 5 to 12 and density functional theory (DFT) for n = 4 to 20. The information on the experimental Raman frequencies and intensities, combined with DFT computations and reported X-ray diffraction structures, provides a consistent interpretation of the Raman spectra and allows establishing relevant structure-property trends. Structural and electronic effects such as benzene ring bending, inter-ring torsions, π-conjugation (aromaticity) and orbital energy gaps as a function of the linear elongation in [n]LPPs versus the macrocyclic curvature in [n]CPPs and of the molecular size (i.e., polymer limit) are systematically analyzed on the basis of the vibrational Raman properties. Changes in the BLA as an indicator of the degree of quinonoid character are analyzed and linked to the Effective Conjugation Coordinate (ECC) model. The BLA patterns involved in twisted and non-twisted conformations and in different species (bipolarons, quinonoid tautomers, and ECC active modes) are compared and their differences are discussed. This paper offers a unified interpretation of structural and electronic aspects in relation to the evolution from linear 1D π-systems to cyclic 2D structures.

  11. FT-IR and Raman spectra, ab initio and density functional computations of the vibrational spectra, molecular geometries and atomic charges of uracil and 5-halogenated uracils (5-X-uracils; X=F, Cl, Br, I).

    PubMed

    Singh, J S

    2014-01-01

    Raman (200-4000 cm(-1)) and FT-IR (400-4000 cm(-1)) spectra of uracil and 5-halogenated uracils (5-X-uracils; X=F, Cl, Br, I) have been recorded and analyzed in the range 200-4000 cm(-1). The optimized molecular geometries, atomic polar tensor (APT) charges and vibrational characteristics have been studied theoretically using restricted Hartree-Fock (RHF) and density functional theory (DFT) methods. Ab initio and DFT calculations [using Becke's exchange in conjunction with Lee-Yang-Parr's correlation functional and Becke's three-parameter hybrid method (B3LYP)] were carried out to study the optimized molecular fundamental vibrational frequencies for uracil and 5-halogenated uracils by employing Gaussian-03 program. Gauss View software was used to make the vibrational analysis. Raman and IR spectra have been computed theoretically for the uracil and 5-halogenated molecules. The fundamental vibrational frequencies along with their corresponding intensities in IR and Raman activities and depolarization ratios of the Raman lines have also been calculated using the RHF and DFT methods employing different basis sets. Quantum chemical calculations helped in the reassignments of some fundamental vibrational modes. Most of the B3LYP/6-311++G(**) vibrational frequencies are in excellent agreement with available experimental assignments. The ring breathing and kekule stretching modes are found to lower magnitudes compared to those for uracil which could be due to mass effect of halogen atom in place of the hydrogen atom. The C-X (X=F, Cl, Br, I) stretching frequency is distinctly separated from the CH/NH ring stretching frequencies on the pyrimidine ring. All other bands have also been assigned different fundamentals/overtones/combinations.

  12. Structural properties, vibrational spectra and surface-enhanced Raman scattering of 2,4,6-trichloro- and tribromoanilines: A comparative study

    NASA Astrophysics Data System (ADS)

    Haruna, Kabiru; Saleh, Tawfik A.; Al Thagfi, Jameel; Al-Saadi, Abdulaziz A.

    2016-10-01

    A comparative electronic and spectroscopic analysis of 2,4,6-trichloroaniline (TCA) and 2,4,6-tribromoaniline (TBA) was carried out by theoretical and experimental techniques. The NH2 inversion barrier in TCA and TBA molecules was predicted to be three times less than that in aniline and 2,4,6-trifluoroaniline. The size of the halogen substituents in the ortho positions is shown by density functional theory to play an important role in determining the electronic and structural properties of the amino group in the investigated haloaniline derivatives. A thorough interpretation of the infrared and Raman spectra has been performed on the basis of the observed and calculated infrared and Raman spectra as well as calculated potential energy distribution values. In addition, the SERS spectra for both trihaloanilines were successfully collected up to a concentration of 10-6 M using aged hydroxylamine-reduced silver colloid as an active substrate for TCA and TBA. SERS intensities of several peaks were found to linearly change with concentration allowing quantitative analyses of TCA and TBA. A relatively stronger interaction in the case of TBA-silver colloids is predicted compared to the TCA analogue.

  13. Vibrational spectra (FT-IR, FT-Raman), frontier molecular orbital, first hyperpolarizability, NBO analysis and thermodynamics properties of Piroxicam by HF and DFT methods.

    PubMed

    Suresh, S; Gunasekaran, S; Srinivasan, S

    2015-03-01

    The solid phase FT-IR and FT-Raman spectra of 4-Hydroxy-2-methyl-N-(2-pyridinyl)-2H-1,2-benzothiazine-3-carboxamide-1,1-dioxide (Piroxicam) have been recorded in the region 4000-400 and 4000-100cm(-1) respectively. The molecular geometry, harmonic vibrational frequencies and bonding features of piroxicam in the ground state have been calculated by Hartree-Fock (HF) and density functional theory (DFT) methods using 6-311++G(d,p) basis set. The calculated harmonic vibrational frequencies are scaled and they are compared with experimental obtained by FT-IR and FT-Raman spectra. A detailed interpretation of the vibrational spectra of the title compound has been made on the basis of the calculated potential energy distribution (PED). The electronic properties, such as HOMO and LUMO energies, molecular electrostatic potential (MESP) are also performed. The linear polarizability (α) and the first order hyper polarizability (β) values of the title compound have been computed. The molecular stability arising from hyper conjugative interaction, charge delocalization has been analyzed using natural bond orbital (NBO) analysis.

  14. The vibrational assignments of the infrared and Raman spectra of the symmetrically substituted 2,3-diphenylquinoxaline and its N,N‧-dioxide: Experimental and computational study

    NASA Astrophysics Data System (ADS)

    Badawi, Hassan M.; Al-Saadi, Abdulaziz A.; Ali, Shaikh A.

    2014-01-01

    2,3-diphenylquinoxaline (DPQ) and 2,3-diphenylquinoxaline N,N‧-dioxide (DPQDO) (also known as 2,3-diphenylquinoxaline 1,4-dioxide) were synthesized, and their infrared and Raman spectra were measured. The structural stability and the vibrational spectra of the two quinoxaline molecules were investigated at the DFT-B3LYP and ab initio MP2 levels of calculation with the 6-311G** basis set. From the calculations, the two molecules were predicted to exist in a non-planar structure with nearly C2 symmetry. The quinoxaline and the two phenyl rings of the parent compound were calculated to have tilting angles of about 12°, 42° and 42° out of the plane of the molecule at the DFT level as compared to the X-ray angles of 12°, 37° and 53°. The non-planar structure was predicted to be about 5 and 11 kcal/mol lower in energy than the perpendicular structures in the case of the parent and the dioxide, repectively. Complete vibrational assignments of the infrared and Raman spectra of DPQ and DPQDO molecules were provided by combining experimental and theoretical data.

  15. Vibrational spectra (FT-IR, FT-Raman), frontier molecular orbital, first hyperpolarizability, NBO analysis and thermodynamics properties of Piroxicam by HF and DFT methods

    NASA Astrophysics Data System (ADS)

    Suresh, S.; Gunasekaran, S.; Srinivasan, S.

    2015-03-01

    The solid phase FT-IR and FT-Raman spectra of 4-Hydroxy-2-methyl-N-(2-pyridinyl)-2H-1,2-benzothiazine-3-carboxamide-1,1-dioxide (Piroxicam) have been recorded in the region 4000-400 and 4000-100 cm-1 respectively. The molecular geometry, harmonic vibrational frequencies and bonding features of piroxicam in the ground state have been calculated by Hartree-Fock (HF) and density functional theory (DFT) methods using 6-311++G(d,p) basis set. The calculated harmonic vibrational frequencies are scaled and they are compared with experimental obtained by FT-IR and FT-Raman spectra. A detailed interpretation of the vibrational spectra of the title compound has been made on the basis of the calculated potential energy distribution (PED). The electronic properties, such as HOMO and LUMO energies, molecular electrostatic potential (MESP) are also performed. The linear polarizability (α) and the first order hyper polarizability (β) values of the title compound have been computed. The molecular stability arising from hyper conjugative interaction, charge delocalization has been analyzed using natural bond orbital (NBO) analysis.

  16. Raman spectra of R{sub 2}O{sub 3} (R—rare earth) sesquioxides with C-type bixbyite crystal structure: A comparative study

    SciTech Connect

    Abrashev, M. V.; Todorov, N. D.; Geshev, J.

    2014-09-14

    Raman spectra of R{sub 2}O{sub 3} (R—Sc, Er, Y, Ho, Gd, Eu, and Sm) powders with C-type bixbyite crystal structure are measured. With the help of these data and ones, previously published for other oxides from the same structural family, general dependencies of the frequencies of the Raman peaks on the cubic crystal unit cell parameter are constructed. Using these dependencies and knowing the symmetry of the peaks for one of the oxides, determined from previous single-crystal measurements, it is possible to find out the symmetry of the peaks from the spectra of all compounds. It was found that the frequency of the six lowest frequency peaks scales with the square root of the mass of the rare earth showing that mainly R ions take part in these vibrations. These results agree with performed here lattice dynamical calculations. The anomalous softening of the frequency of some peaks in the spectra of Eu{sub 2}O{sub 3} is discussed.

  17. Side chain dependence of intensity and wavenumber position of amide I' in IR and visible Raman spectra of XA and AX dipeptides.

    PubMed

    Measey, Thomas; Hagarman, Andrew; Eker, Fatma; Griebenow, Kai; Schweitzer-Stenner, Reinhard

    2005-04-28

    A series of AX and XA dipeptides in D2O have been investigated by FTIR, isotropic, and anisotropic Raman spectroscopy at acidic, neutral, and alkaline pD, to probe the influence of amino acid side chains on the amide I' band. We obtained a set of spectral parameters for each peptide, including intensities, wavenumbers, half-widths, and dipole moments, and found that these amide I' parameters are indeed dependent on the side chain. Side chains with similar characteristic properties were found to have similar effects on the amide I'. For example, dipeptides with aliphatic side chains were found to exhibit a downshift of the amide I' wavenumber, while those containing polar side chains experienced an increase in wavenumber. The N-terminal charge causes a substantial upshift of amide I', whereas the C-terminal charge causes a moderate decrease of the transition dipole moment. Density functional theory (DFT) calculations on the investigated dipeptides in vacuo yielded different correlations between theoretically and experimentally obtained wavenumbers for aliphatic/aromatic and polar/charged side chains, respectively. This might be indicative of a role of the hydration shell in transferring side chain-backbone interactions. For Raman bands, we found a correlation between amide I' depolarization ratio and wavenumber which reflects that some side chains (valine, histidine) have a significant influence on the Raman tensor. Altogether, the obtained data are of utmost importance for utilizing amide I as a tool for secondary structure analysis of polypeptides and proteins and providing an experimental basis for theoretical modeling of this important backbone mode. This is demonstrated by a rather accurate modeling for the amide I' band profiles of the IR, isotropic Raman, and anisotropic Raman spectra of the beta-amyloid fragment Abeta(1-82).

  18. Electronic Raman scattering with excitation between localized states observed in the zinc M{sub 2,3} soft x-ray spectra of ZnS

    SciTech Connect

    Zhou, L.; Callcott, T.A.; Jia, J.J.

    1997-04-01

    Zn M{sub 2,3} soft x-ray fluorescence (SXF) spectra of ZnS and ZnS{sub .5}Se{sub .5} excited near threshold show strong inelastic scattering effects that can be explained using a simple model and an inelastic scattering theory based on second order perturbation theory. This scattering is often called electronic resonance Raman scattering. Tulkki and Aberg have developed this theory in detail for atomic systems, but their treatment can be applied to solid systems by utilizing electronic states characteristic of solids rather than of atomic systems.

  19. Raman spectra and cross sections of ammonia, chlorine, hydrogen sulfide, phosgene, and sulfur dioxide toxic gases in the fingerprint region 400-1400 cm-1

    NASA Astrophysics Data System (ADS)

    Aggarwal, R. L.; Farrar, L. W.; Di Cecca, S.; Jeys, T. H.

    2016-02-01

    Raman spectra of ammonia (NH3), chlorine (Cl2), hydrogen sulfide (H2S), phosgene (COCl2), and sulfur dioxide (SO2) toxic gases have been measured in the fingerprint region 400-1400 cm-1. A relatively compact (<2'x2'x2'), sensitive, 532 nm 10 W CW Raman system with double-pass laser and double-sided collection was used for these measurements. Two Raman modes are observed at 934 and 967 cm-1 in NH3. Three Raman modes are observed in Cl2 at 554, 547, and 539 cm-1, which are due to the 35/35 35/37, and 37/37 Cl isotopes, respectively. Raman modes are observed at 870, 570, and 1151 cm-1 in H2S, COCl2, and SO2, respectively. Values of 3.68 ± 0.26x10-32 cm2/sr (3.68 ± 0.26x10-36 m2/sr), 1.37 ± 0.10x10-30 cm2/sr (1.37 ± 0.10x10-34 m2/sr), 3.25 ± 0.23x10-31 cm2/sr (3.25 ± 0.23x10-35 m2/sr), 1.63 ± 0.14x10-30 cm2/sr (1.63 ± 0.14x10-34 m2/sr), and 3.08 ± 0.22x10-30 cm2/sr (and 3.08 ± 0.22x10-34 m2/sr) were determined for the differential Raman cross section of the 967 cm-1 mode of NH3, sum of the 554, 547, and 539 cm-1 modes of Cl2, 870 cm-1 mode of H2S, 570 cm-1 mode of COCl2, and 1151 cm-1 mode of SO2, respectively, using the differential Raman cross section of 3.56 ± 0.14x10-31 cm2/sr (3.56 ± 0.14x10-35 m2/sr) for the 1285 cm-1 mode of CO2 as the reference.

  20. Analysis of torsional spectra of molecules with two internal C/3v/ rotors. III - Far-infrared and gas phase Raman spectra of dimethylamine-d0, -d3, and -d6

    NASA Technical Reports Server (NTRS)

    Durig, J. R.; Griffin, M. G.; Groner, P.

    1977-01-01

    The Raman spectra of gaseous dimethylamine-d0, -d3, and -d6 have been recorded between 0 and 4000/cm. The far-infrared spectra have been recorded between 300 and 100/cm. Considerable torsional data are reported and used to characterize the torsional potential function based on a semi-rigid model. The average effective V3 for the dimethylamines was found to be 1052 plus or minus 12/cm. The cos-cos coupling term was approximately 15% of the effective V3, whereas the sine-sine coupling term was of an order of magnitude smaller for (CH3)2NH and (CD3)2NH. However, for the mixed isotope the sine-sine term was found to be negligible and the cos-cos about one-half the value obtained for the other two isotopes.

  1. Raman spectra of (Bi,Pb) sub 2 Sr sub 2 CaCu sub 2 O sub 8+ y single crystals and the role of lead substitution

    SciTech Connect

    Sapriel, J.; Schneck, J.; Scott, J.F.; Toledano, J.C.; Pierre, L.; Chavignon, J.; Daguet, C. ); Chaminade, J.P. ); Boyer, H. )

    1991-03-01

    We report the Raman spectra of chemically characterized (Bi{sub 2{minus}{ital x}}Pb{sub {ital x}})Sr{sub 2}CaCu{sub 2}O{sub 8+{ital y}} single crystals for 0{lt}{ital x}{lt}0.4. Significant modifications of the spectra, becoming more pronounced with increasing {ital x}, are noted with respect to the lead-free crystals in the ranges of the 117-cm{sup {minus}1}, (460--530)-cm{sup {minus}1}, and (630--650)-cm{sup {minus}1} lines. The interpretation of these modifications provides an important confirmation of recent speculations concerning the lattice dynamics of this family of superconductors and the role of lead in modifying their structure and their microstructure.

  2. Isomerization and Fragmentation of Cyclohexanone in a Heated Micro-Reactor

    NASA Astrophysics Data System (ADS)

    Porterfield, Jessica P.; Nguyen, Thanh Lam; Baraban, Joshua H.; Buckingham, Grant; Troy, Tyler; Kostko, Oleg; Ahmed, Musahid; Stanton, John F.; Daily, John W.; Ellison, Barney

    2016-06-01

    he thermal decomposition of cyclohexanone (C_6H10=O) has been studied in a set of flash-pyrolysis micro-reactors. Samples of C_6H10=O were first observed to decompose at 1200 K. Short residence times of 100 μsec and dilution of samples (<0.1%) isolate unimolecular decomposition. Products were identified by tunable VUV photoionization mass spectroscopy, photoionization appearance thresholds, and complementary matrix infrared absorption spectroscopy. Thermal cracking of cyclohexanone appeared to result from a variety of competing pathways pictured to the right. Isomerization of cyclohexanone to the enol, cyclohexen-1-ol (C_6H_9OH), is followed by retro-Diels-Alder cleavage to CH_2=CH_2 and CH_2=C(OH)-CH=CH_2. Further isomerization of CH_2=C(OH)CH=CH_2 to methyl vinyl ketone (CH_3COCH=CH_2, MVK) was also observed. Photoionization spectra identified both enols, C_6H_9OH and CH=C(OH)CH=CH_2, and the ionization threshold of C_6H_9OH was measured to be 8.2 ± 0.1 eV. At 1200 K, the products of cyclohexanone pyrolysis were found to be: C_6H_9OH, CH_2=C(OH)CH=CH_2, MVK, CH_2CHCH_2, CO, CH_2=C=O, CH_3, CH_2=C=CH_2, CH_2=CH-CH=CH_2, CH_2=CHCH_2CH_3, CH_2=CH_2, and HCCH.

  3. Chemometric evaluation of temperature-dependent surface-enhanced Raman spectra of riboflavin: What is the best multivariate approach to describe the effect of temperature?

    NASA Astrophysics Data System (ADS)

    Kokaislová, Alžběta; Kalhousová, Milena; Gráfová, Michaela; Matějka, Pavel

    2014-10-01

    Riboflavin is an essential nutrient involved in energetic metabolism. It is used as a pharmacologically active substance in treatment of several diseases. From analytical point of view, riboflavin can be used as an active part of sensors for substances with affinity to riboflavin molecules. In biological environment, metal substrates coated with riboflavin are exposed to temperatures that are different from room temperature. Hence, it is important to describe the influence of temperature on adsorbed molecules of riboflavin, especially on orientation of molecules towards the metal surface and on stability of adsorbed molecular layer. Surface-enhanced Raman scattering (SERS) spectroscopy is a useful tool for investigation of architecture of molecular layers adsorbed on metal surfaces because the spectral features in SERS spectra change with varying orientation of molecules towards the metal surface, as well as with changes in mutual interactions among adsorbed molecules. In this study, riboflavin was adsorbed on electrochemically prepared massive silver substrates that were exposed to temperature changes according to four different temperature programs. Raman spectra measured at different temperatures were compared considering positions of spectral bands, their intensities, bandwidths and variability of all these parameters. It was found out that increase of substrate temperature up to 50 °C does not lead to any observable decomposition of riboflavin molecules, but the changes of band intensity ratios within individual spectra are apparent. To distinguish sources of variability beside changes in band intensities and widths, Principal Component Analysis (PCA) was applied. Discriminant Analysis (DA) was used to explore if the SERS spectra can be separated according to temperature. The results of Partial Least Squares (PLS) regression demonstrate the possibility to predict the sample temperature using SERS spectral features. Results of all performed experiments and

  4. Applications of Group Theory: Infrared and Raman Spectra of the Isomers of 1,2-Dichloroethylene: A Physical Experiment

    ERIC Educational Resources Information Center

    Craig, Norman C.; Lacuesta, Nanette N.

    2004-01-01

    A study of the vibrational spectroscopy of the cis and trans isomers of 1,2-dichloroethylene provides an excellent opportunity to learn the applications group theory in laboratories. The necessity of using infrared (IR) spectroscopy and Raman spectroscopy in making full vibrational assignments is illustrated.

  5. Ab Initio Calculated and Experimentally Measured Raman Spectra of Spodumene (LiAlSi2O6)

    NASA Astrophysics Data System (ADS)

    Stangarone, C.; Prencipe, M.; Mantovani, L.; Bersani, D.; Tribaudino, M.; Lottici, P. P.

    2014-06-01

    Polarization Raman measurements on spodumene enabled the identification of all 30 active modes (14 Ag and 16 Bg). Ab initio CRYSTAL14 calculations (WC1LYP hamiltonian) give very good agreement for frequencies (ǀΔǀ< 4.8 cm^-1) and intensities.

  6. Evolution mechanism of mesoporous silicon nanopillars grown by metal-assisted chemical etching and nanosphere lithography: correlation of Raman spectra and red photoluminescence

    NASA Astrophysics Data System (ADS)

    Karadan, Prajith; John, Siju; Anappara, Aji A.; Narayana, Chandrabhas; Barshilia, Harish C.

    2016-07-01

    We have fabricated highly ordered, vertically aligned, high aspect ratio silicon nanopillars (SiNPLs) of diameter ~80 nm by combining metal-assisted chemical etching and nanosphere lithography. The evolution of surface morphology of porous silicon nanopillars has been explained, and the presence of mesoporous structures was detected on the top of silicon nanopillars using field emission scanning electron microscopy. The mesoporosity of the SiNPLs is confirmed by Brunauer-Emmett-Teller measurements. The peak shift and the splitting of optical phonon modes into LO and TO modes in the micro-Raman spectra of mesoporous SiNPLs manifest the presence of 2-3 nm porous Si nanocrystallites ( P-SiNCs) on the top of SiNPLs and the size of crystallites was calculated using bond polarizability model for spherical phonon confinement. The origin of red luminescence is explained using quantum confinement (QC) and QC luminescent center models for the P-SiNCs, which is correlated with the micro-Raman spectra. Finally, we confirmed the origin of the red luminescence is from the P-SiNCs formed on surface of SiNPLs, highly desired for LED devices by suitably tailoring the substrate.

  7. Line interference effects using a refined Robert-Bonamy formalism: The test case of the isotropic Raman spectra of autoperturbed N2

    NASA Astrophysics Data System (ADS)

    Boulet, Christian; Ma, Qiancheng; Thibault, Franck

    2014-02-01

    A symmetrized version of the recently developed refined Robert-Bonamy formalism [Q. Ma, C. Boulet, and R. H. Tipping, J. Chem. Phys. 139, 034305 (2013)] is proposed. This model takes into account line coupling effects and hence allows the calculation of the off-diagonal elements of the relaxation matrix, without neglecting the rotational structure of the perturbing molecule. The formalism is applied to the isotropic Raman spectra of autoperturbed N2 for which a benchmark quantum relaxation matrix has recently been proposed. The consequences of the classical path approximation are carefully analyzed. Methods correcting for effects of inelasticity are considered. While in the right direction, these corrections appear to be too crude to provide off diagonal elements which would yield, via the sum rule, diagonal elements in good agreement with the quantum results. In order to overcome this difficulty, a re-normalization procedure is applied, which ensures that the off-diagonal elements do lead to the exact quantum diagonal elements. The agreement between the (re-normalized) semi-classical and quantum relaxation matrices is excellent, at least for the Raman spectra of N2, opening the way to the analysis of more complex molecular systems.

  8. A 2A2<--X 2B1 absorption and Raman spectra of the OClO molecule: A three-dimensional time-dependent wave packet study

    NASA Astrophysics Data System (ADS)

    Sun, Zhigang; Lou, Nanquan; Nyman, Gunnar

    2005-02-01

    Time-dependent wave packet calculations of the (A 2A2←X 2B1) absorption and Raman spectra of the OClO molecule are reported. The Fourier grid Hamiltonian method in three dimensions is employed. The X 2B1 ground state ab initio potential energy surface reported by Peterson [J. Chem. Phys. 109, 8864 (1998)] is used together with his corresponding A 2A2 state surface or the revised surface of the A 2A2 state by Xie and Guo [Chem. Phys. Lett. 307, 109 (1999)]. Radau coordinates are used to describe the vibrations of a nonrotating OClO molecule. The split-operator method combined with fast Fourier transform is applied to propagate the wave function. We find that the ab initio A 2A2 potential energy surface better reproduces the detailed structures of the absorption spectrum at long wavelength, while the revised surface of the A 2A2 state, consistent with the work of Xie and Guo, better reproduces the overall shape and the energies of the vibrational levels. Both surfaces of the A 2A2 state can reasonably reproduce the experimental Raman spectra but neither does so in detail for the numerical model employed in the present work.

  9. Line interference effects using a refined Robert-Bonamy formalism: The test case of the isotropic Raman spectra of autoperturbed N{sub 2}

    SciTech Connect

    Boulet, Christian; Ma, Qiancheng

    2014-02-28

    A symmetrized version of the recently developed refined Robert-Bonamy formalism [Q. Ma, C. Boulet, and R. H. Tipping, J. Chem. Phys. 139, 034305 (2013)] is proposed. This model takes into account line coupling effects and hence allows the calculation of the off-diagonal elements of the relaxation matrix, without neglecting the rotational structure of the perturbing molecule. The formalism is applied to the isotropic Raman spectra of autoperturbed N{sub 2} for which a benchmark quantum relaxation matrix has recently been proposed. The consequences of the classical path approximation are carefully analyzed. Methods correcting for effects of inelasticity are considered. While in the right direction, these corrections appear to be too crude to provide off diagonal elements which would yield, via the sum rule, diagonal elements in good agreement with the quantum results. In order to overcome this difficulty, a re-normalization procedure is applied, which ensures that the off-diagonal elements do lead to the exact quantum diagonal elements. The agreement between the (re-normalized) semi-classical and quantum relaxation matrices is excellent, at least for the Raman spectra of N{sub 2}, opening the way to the analysis of more complex molecular systems.

  10. The stability and Raman spectra of ikaite, CaCO3·6H2O, at high pressure and temperature

    USGS Publications Warehouse

    Shahar, Anat; Bassett, William A.; Mao, Ho-kwang; Chou, I-Ming; Mao, Wendy

    2005-01-01

    Raman analyses of single crystals of ikaite, CaCO3·6H2O, synthesized in a diamond-anvil cell at ambient temperature yield spectra from 0.14 to 4.08 GPa; the most intense peaks are at 228 and 1081 cm−1 corresponding to Eg(external) and A1g (internal) modes of vibrations in CO2− 3 ions, respectively. These are in good agreement with Raman spectra previously published for ikaite in powder form at ambient temperature and pressure. Visual observations of a sample consisting initially of a mixture of calcite + water in a hydrothermal diamond-anvil cell yielded a P-T phase diagram up to 2 GPa and 120 °C; the boundary for the reaction ikaite ↔ aragonite + water has a positive slope and is curved convexly toward the aragonite + water field similar to typical melt curves. This curvature can be explained in terms of the Clapeyron equation for a boundary between a solid phase and a more compressible liquid phase or largely liquid phase assemblage.

  11. Development and integration of block operations for data invariant automation of digital preprocessing and analysis of biological and biomedical Raman spectra.

    PubMed

    Schulze, H Georg; Turner, Robin F B

    2015-06-01

    High-throughput information extraction from large numbers of Raman spectra is becoming an increasingly taxing problem due to the proliferation of new applications enabled using advances in instrumentation. Fortunately, in many of these applications, the entire process can be automated, yielding reproducibly good results with significant time and cost savings. Information extraction consists of two stages, preprocessing and analysis. We focus here on the preprocessing stage, which typically involves several steps, such as calibration, background subtraction, baseline flattening, artifact removal, smoothing, and so on, before the resulting spectra can be further analyzed. Because the results of some of these steps can affect the performance of subsequent ones, attention must be given to the sequencing of steps, the compatibility of these sequences, and the propensity of each step to generate spectral distortions. We outline here important considerations to effect full automation of Raman spectral preprocessing: what is considered full automation; putative general principles to effect full automation; the proper sequencing of processing and analysis steps; conflicts and circularities arising from sequencing; and the need for, and approaches to, preprocessing quality control. These considerations are discussed and illustrated with biological and biomedical examples reflecting both successful and faulty preprocessing.

  12. Line Interference Effects Using a Refined Robert-Bonamy Formalism: the Test Case of the Isotropic Raman Spectra of Autoperturbed N2

    NASA Technical Reports Server (NTRS)

    Boulet, Christian; Ma, Qiancheng; Thibault, Franck

    2014-01-01

    A symmetrized version of the recently developed refined Robert-Bonamy formalism [Q. Ma, C. Boulet, and R. H. Tipping, J. Chem. Phys. 139, 034305 (2013)] is proposed. This model takes into account line coupling effects and hence allows the calculation of the off-diagonal elements of the relaxation matrix, without neglecting the rotational structure of the perturbing molecule. The formalism is applied to the isotropic Raman spectra of autoperturbed N2 for which a benchmark quantum relaxation matrix has recently been proposed. The consequences of the classical path approximation are carefully analyzed. Methods correcting for effects of inelasticity are considered. While in the right direction, these corrections appear to be too crude to provide off diagonal elements which would yield, via the sum rule, diagonal elements in good agreement with the quantum results. In order to overcome this difficulty, a re-normalization procedure is applied, which ensures that the off-diagonal elements do lead to the exact quantum diagonal elements. The agreement between the (re-normalized) semi-classical and quantum relaxation matrices is excellent, at least for the Raman spectra of N2, opening the way to the analysis of more complex molecular systems.

  13. Raman and IR studies and DFT calculations of the vibrational spectra of 2,4-Dithiouracil and its cation and anion

    NASA Astrophysics Data System (ADS)

    Singh, R.; Yadav, R. A.

    2014-09-01

    Raman and FTIR spectra of solid 2,4-Dithiouracil (DTU) at room temperature have been recorded. DFT calculations were carried out to compute the optimized molecular geometries, GAPT charges and fundamental vibrational frequencies along with their corresponding IR intensities, Raman activities and depolarization ratios of the Raman bands for the neutral DTU molecule and its cation (DTU+) and anion (DTU-) using the Gaussian-03 software. Addition of one electron leads to increase in the atomic charges on the sites N1 and N3 and decrease in the atomic charges on the sites S8 and S10. Due to ionization of DTU molecule, the charge at the site C6 decreases in the cationic and anionic radicals of DTU as compared to its neutral species. As a result of anionic radicalization, the C5sbnd C6 bond length increases and loses its double bond character while the C4sbnd C5 bond length decreases. In the case of the DTU+ ion the IR and Raman band corresponding to the out-of-phase coupled Nsbnd H stretching mode is strongest amongst the three species. The anionic DTU radical is found to be the most stable. The two NH out-of-plane bending modes are found to originate due to out-of-phase and in-phase coupling of the two NH bonds in the anion and cation contrary to the case of the neutral DTU molecule in which the out-of-plane bending motions of the two NH bonds are not coupled.

  14. [The symmetric zero-area conversion adptive peak-seeking method research for LIBS/Raman spectra].

    PubMed

    Bi, Yun-Feng; Li, Ying; Zheng, Rong-Er

    2013-02-01

    Automatic peak seeking is an indispensable link for in situ and real-time spectral detection and analysis, and has important significance for application of spectral technology to such fields as long-term marine monitoring and oil mud logging. Based on some typical LIBS/Raman spectrum data obtained from lab, three kinds of symmetric zero-area transformation functions respectively constructed from Gaussian, Lorentz and Voigt function were compared, and the results show that there exists an optimal symmetrical zero-area transformation function for peak seeking, but all the transformation functions obtain the same peak position and peak width under their optimal parameters. The proposed method is free from spectrum background and baseline trend influence, adaptive to the wide range of SNR, close to or even better than artificial recognition for weak peak, and could be used in future automatic in-situ analysis of LIBS and Raman. PMID:23697128

  15. FTIR, FT-RAMAN, NMR, spectra, normal co-ordinate analysis, NBO, NLO and DFT calculation of N,N-diethyl-4-methylpiperazine-1-carboxamide molecule.

    PubMed

    Muthu, S; Elamurugu Porchelvi, E

    2013-11-01

    The Fourier Transform Infrared (FT-IR) and FT-Raman of N,N-diethyl-4-methylpiperazine-1-carboxamide (NND4MC) have been recorded and analyzed. The structure of the compound was optimized and the structural characteristics were determined by density functional theory (DFT) using B3LYP method with 6-31G(d,p) and 6-311G(d,p) basis sets. The difference between the observed and scaled wavenumber values of most of the fundamentals is very small. The theoretically predicted FT-IR and FT-Raman spectra of the title molecule have been constructed. The detailed interpretation of the vibrational spectra has been carried out with aid of normal coordinate analysis (NCA) following the scaled quantum mechanical force field methodology. Stability of the molecule arising from hyperconjugative interactions and charge delocalization has been analyzed using natural bond orbital (NBO) analysis. The results show that electron density (ED) in the σ(*) and π(*) antibonding orbitals and second order delocalization energies (E2) confirm the occurrence of intramolecular charge transfer (ICT) within the molecule. The electronic dipole moment (μD) and the first hyperpolarizability (βtot) values of the investigated molecule were computed using Density Functional Theory (DFT/B3LYP) with 6-31G(d,p) and 6-311G(d,p) basis sets. The calculated results also show that the NND4MC molecule may have microscopy nonlinear optical (NLO) behavior with non zero values. Mulliken atomic charges of NND4MC were calculated. The (13)C nuclear magnetic resonance (NMR) chemical shifts of the molecule were calculated by the gauge independent atomic orbital (GIAO) method and compared with experimental results. The UV-Vis spectrum of the compound was recorded. The theoretical electronic absorption spectra have been calculated by using CIS, TD-DFT methods. A study on the electronic properties, such as HOMO and LUMO energies, molecular electrostatic potential (MEP) were also performed.

  16. Structural peculiarities and Raman spectra of TeO{sub 2}/WO{sub 3}-based glasses: A fresh look at the problem

    SciTech Connect

    Mirgorodsky, Andreie; Colas, Maggy; Smirnov, Mikhael; Merle-Mejean, Therese; El-Mallawany, Raouf; Thomas, Philippe

    2012-06-15

    Ideas currently dominating the field of structural studies of TeO{sub 2}-based glasses are critically considered. A new physically and chemically consistent approach to the constitution of binary TeO{sub 2}-WO{sub 3} glasses is proposed, in which the reasoning coming from the Raman spectra reexamination are correlated with the basic principles of thermodynamics. Separation into two phases is suggested in such glasses. One phase is TeO{sub 2}, and another is Te(WO{sub 4}){sub 2} consisting of tetrahedral [WO{sub 4}]{sup 2-} anions and of Te{sup 4+} cations. Supplementary M{sub n}O{sub k} oxides added to the glasses are found incorporated in the former phase, thus producing solid solutions (for M=Ti, Nb) or tellurite compounds (for M=Nd). - Graphical abstract: Raman scattering spectra of TeO{sub 2}-based glasses with the following compositions (mol%): (a) pure TeO{sub 2}, (b) 85TeO{sub 2}-15WO{sub 3}, (c) 80TeO{sub 2}-15WO{sub 3}-5TiO{sub 2} ,(d) 80TeO{sub 2}-10WO{sub 3}-5TiO{sub 2}-5Nb{sub 2}O{sub 5}, (e) 80TeO{sub 2}-12WO{sub 3}-5TiO{sub 2}-3 Nd{sub 2}O{sub 3}, (f) 80TeO{sub 2}-10WO{sub 3}-5TiO{sub 2}-5Nd{sub 2}O{sub 3}. Highlights: Black-Right-Pointing-Pointer Structural studies of TeO{sub 2}-WO{sub 3} glasses are critically considered. Black-Right-Pointing-Pointer The oxide glass formation is analyzed from Raman spectra and thermodynamic principles. Black-Right-Pointing-Pointer Separation into two phases, TeO{sub 2} and Te(WO{sub 4}){sub 2}, is intrinsic in such glasses. Black-Right-Pointing-Pointer TiO{sub 2} or Nb{sub 2}O{sub 5} addition to TeO{sub 2}-WO{sub 3} glasses leads to produce solid solutions. Black-Right-Pointing-Pointer Nd{sub 2}O{sub 3} addition to TeO{sub 2}-WO{sub 3} glasses leads to produce a tellurite compound.

  17. Infrared and Raman spectra, theoretical calculations, conformations, and two-dimensional potential energy surface of 2-cyclopenten-1-one ethylene ketal.

    PubMed

    Sheu, Hong-Li; Meinander, Niklas; Laane, Jaan

    2015-03-01

    The infrared and Raman spectra of the bicyclic spiro molecule 2-cyclopenten-1-one ethylene ketal (CEK) have been recorded. Density functional theory (DFT) calculations were used to compute the theoretical spectra, and these agree well with the experimental spectra. The structures and conformational energies for the two pairs of conformational minima, which can be defined in terms of ring-bending (x) and ring-twisting (τ) vibrational coordinates, have also been calculated. Utilizing the results from ab initio MP2/cc-PVTZ computations, a two-dimensional potential energy surface (PES) was calculated. The energy levels and wave functions for this PES were then calculated, and the characteristics of these were analyzed. At lower energies, all of the quantum states are doubly degenerate and correspond to either the lower-energy conformation L or to conformation H, which is 154 cm(-1) higher in energy. At energies above the barrier to interconversion of 264 cm(-1), the wave functions show that the quantum levels have significant probabilities for both conformations. PMID:25133325

  18. Photochemical Reactions of Cyclohexanone: Mechanisms and Dynamics.

    PubMed

    Shemesh, Dorit; Nizkorodov, Sergey A; Gerber, R Benny

    2016-09-15

    Photochemistry of carbonyl compounds is of major importance in atmospheric and organic chemistry. The photochemistry of cyclohexanone is studied here using on-the-fly molecular dynamics simulations on a semiempirical multireference configuration interaction potential-energy surface to predict the distribution of photoproducts and time scales for their formation. Rich photochemistry is predicted to occur on a picosecond time scale following the photoexcitation of cyclohexanone to the first singlet excited state. The main findings include: (1) Reaction channels found experimentally are confirmed by the theoretical simulations, and a new reaction channel is predicted. (2) The majority (87%) of the reactive trajectories start with a ring opening via C-Cα bond cleavage, supporting observations of previous studies. (3) Mechanistic details, time scales, and yields are predicted for all reaction channels. These benchmark results shed light on the photochemistry of isolated carbonyl compounds in the atmosphere and can be extended in the future to photochemistry of more complex atmospherically relevant carbonyl compounds in both gaseous and condensed-phase environments.

  19. Photochemical Reactions of Cyclohexanone: Mechanisms and Dynamics.

    PubMed

    Shemesh, Dorit; Nizkorodov, Sergey A; Gerber, R Benny

    2016-09-15

    Photochemistry of carbonyl compounds is of major importance in atmospheric and organic chemistry. The photochemistry of cyclohexanone is studied here using on-the-fly molecular dynamics simulations on a semiempirical multireference configuration interaction potential-energy surface to predict the distribution of photoproducts and time scales for their formation. Rich photochemistry is predicted to occur on a picosecond time scale following the photoexcitation of cyclohexanone to the first singlet excited state. The main findings include: (1) Reaction channels found experimentally are confirmed by the theoretical simulations, and a new reaction channel is predicted. (2) The majority (87%) of the reactive trajectories start with a ring opening via C-Cα bond cleavage, supporting observations of previous studies. (3) Mechanistic details, time scales, and yields are predicted for all reaction channels. These benchmark results shed light on the photochemistry of isolated carbonyl compounds in the atmosphere and can be extended in the future to photochemistry of more complex atmospherically relevant carbonyl compounds in both gaseous and condensed-phase environments. PMID:27525541

  20. Gas Phase Raman Spectra of Butadiene and BUTADIENE-d_{6} and the Internal Rotation Potential Energy Function

    NASA Astrophysics Data System (ADS)

    Boopalachandran, Praveenkumar; Laane, Jaan; Craig, Norman C.

    2009-06-01

    The Raman spectrum of butadiene has been previously reported by Carreira and by Engeln and co-workers. Both studies reported a series of bands corresponding to double quantum jumps of ν_{13}, the internal rotation vibration, of the trans rotamer. Both studies also reported weaker bands assigned to the higher energy conformer. Carriera assigned these to the cis form while Engeln assigned them to the gauche form. Recent high level calculations by Feller and Craig also assign the higher energy form as gauche. In the present study we report the gas phase Raman spectrum of butadiene and its d_{6} isotopomer at both 25^°C and 260^°C. Several new spectral features in the 330 to 210 cm^{-1} region were observed and the effect of heating on the band intensities was studied. In addition, combination bands were observed in the 630 to 690 cm^{-1} (ν_{12} + ν_{13}) and 1130 to 1180 cm^{-1} (ν_{10} + ν_{13}) regions. A periodic potential energy function with V_{1}, V_{2}, V_{3}, V_{4}, and V_{6} terms was utilized to fit the data. This function was compared to the results from previous work and to the theoretical calculation. L. Carreira, J. Phys. Chem. 62, 3851 (1975). R. Engeln, D. Consalvo, and J. Reuss, J. Chem. Phys. 160, 427 (1992). D. Feller and N. C. Craig, J. Phys. Chem. 113, 1601 (2009).

  1. Vibrational frequency analysis, FT-IR and Laser-Raman spectra, DFT studies on ethyl (2E)-2-cyano-3-(4-methoxyphenyl)-acrylate.

    PubMed

    Sert, Yusuf; Sreenivasa, S; Doğan, Hatice; Mohan, N R; Suchetan, P A; Ucun, Fatih

    2014-09-15

    The experimental FT-IR (4000-400 cm(-1)) and Laser-Raman spectra (4000-100 cm(-1)) of ethyl (2E)-2-cyano-3-(4-methoxyphenyl)-acrylate in solid phase have been recorded. Its theoretical vibrational frequencies, IR intensities, Raman activities and optimized geometric parameters (bond lengths and bond angles) have been calculated using density functional theory (DFT/B3LYP: Becke, 3-parameter, Lee-Yang-Parr and DFT/M06-2X: the highly parameterized empirical exchange correlation function) with 6-311++G(d, p) basis set by Gaussian 03 software, for the first time. The assignments of the vibrational frequencies have been done by potential energy distribution (PED) analysis using VEDA4 software. The optimized geometric parameters and vibrational frequencies have been seen to be in good agreement with the corresponding experimental data and results in the literature. In addition, the highest occupied molecular orbital (HOMO) energy, the lowest unoccupied molecular orbital (LUMO) energy and the other related molecular energy values of the compound have been investigated by using the same theoretical calculations.

  2. Quantum chemical vibrational study, molecular property, FTIR, FT-Raman spectra, NBO, HOMO-LUMO energies and thermodynamic properties of 1-methyl-2-phenyl benzimidazole

    NASA Astrophysics Data System (ADS)

    Karnan, M.; Balachandran, V.; Murugan, M.; Murali, M. K.

    2014-09-01

    The solid phase FT-IR and FT-Raman spectra of 1-methyl-2-phenyl benzimidazole (MPBZ) have been recorded in the condensed state. In this work, experimental and theoretical study on the molecular structure, quantum chemical calculations of energies and vibrational wavenumbers of MPBZ is presented. The vibrational frequencies of the title compound were obtained theoretically by DFT/B3LYP calculations employing the standard 6-311+G(d,p) and 6-311++G(d,p) basis set for optimized geometry and were compared with Fourier transform infrared spectrum (FTIR) in the region of 4000-400 cm-1 and with Fourier transform Raman spectrum in the region of 4000-100 cm-1. Complete vibrational assignments, analysis and correlation of the fundamental modes for the title compound were carried out. The vibrational harmonic frequencies were scaled using scale factor, yielding a good agreement between the experimentally recorded and the theoretically calculated values. The study is extended to calculate the HOMO-LUMO energy gap, NBO, mapped molecular electrostatic potential (MEP) surfaces, polarizability, Mulliken charges and thermodynamic properties of the title compound.

  3. Raman spectra and density of Li 2O-B 2O 3-GeO 2 glasses with high Li 2O content

    NASA Astrophysics Data System (ADS)

    Mansour, E.

    2010-01-01

    One series of glass having the molar formula y[42.5Li 2O·57.5GeO 2]·(1- y)[42.5Li 2O·57.5B 2O 3] where y ranged between 0 and 0.55 has been prepared and measured for density, molar volume and Raman spectra. No density anomaly was observed throughout the composition range of the studied glasses. The large difference in molecular mass between that of B 2O 3 and GeO 2 is the reason for the density change. The linear change in density reveals that each oxide in the glass would contribute to the density by a specific factor. Alkali oxide is incorporated into the borate as well as the germanate networks. There are three essential Raman broad bands at ∼525, ∼775 and ∼835 cm -1. With increasing GeO 2 content, the number of NBOs associated with Q 2 decreases in the germanate network while three-membered rings of GeO 4 tetrahedra are formed. The number of borate groups containing four coordinated boron decreases with increasing GeO 2 content at the expense of B 2O 3.

  4. Theoretical surface-enhanced Raman spectra study of substituted benzenes. II. Density functional theoretical SERS modelling of o-, m-, and p-methoxybenzonitrile

    NASA Astrophysics Data System (ADS)

    Fleming, Guillermo Diaz; Golsio, Italo; Aracena, Andres; Celis, Freddy; Vera, Leticia; Koch, Rainer; Campos-Vallette, Marcelo

    2008-12-01

    The SERS modelling of o-, m-, and p-methoxybenzonitrile has been performed following the same methodology that in Part I. Optimized structure obtained from DFT calculations in a B3LYP-LANL2DZ level of calculation shows different tilted positions for the isomers under study. From correlations obtained by comparison of Raman and SERS spectra concerning geometrical parameters, frequency shifting, change in band intensity, and force constants is possible to give insight about the different effect of the metal surface on these molecules and the structural reasons of this behaviour. Frontier orbital analysis gives further information and reveals a ligand to metal charge transfer mechanism for all isomers, as well as its relative importance.

  5. Correlation of observed and model vibrational frequencies for aqueous organic acids: UV resonance Raman spectra and molecular orbital calculations of benzoic, salicylic, and phthalic acids.

    PubMed

    Trout, Chad C; Tambach, T J; Kubicki, James D

    2005-09-01

    The aromatic carboxylic acids benzoic, salicylic and phthalic acid were used to study the interaction of soluble organics compounds with metal cations. To accomplish this, we have developed methods for studying the carboxylic acids using UV resonance Raman (UVRR) combined with molecular orbital density functional theory calculations. The pH values of the acid solutions were based on the pK(a)'s for the different acids to examine the neutral and charged species. Deprotonation of the organic acids was detectable down to 10(-4)M using UVRR (two orders of magnitude lower than previous vibrational spectroscopy studies). Limitations to decreasing the concentration lower using the current UVRR facilities are discussed. Two methods were used to calculate the optimized geometry and frequencies of the acids: explicit and continuum solvation. The frequencies from the experimental spectra were then compared to the theoretical results obtained from the two methods.

  6. Correlation of observed and model vibrational frequencies for aqueous organic acids: UV resonance Raman spectra and molecular orbital calculations of benzoic, salicylic, and phthalic acids

    NASA Astrophysics Data System (ADS)

    Trout, Chad C.; Tambach, T. J.; Kubicki, James D.

    2005-09-01

    The aromatic carboxylic acids benzoic, salicylic and phthalic acid were used to study the interaction of soluble organics compounds with metal cations. To accomplish this, we have developed methods for studying the carboxylic acids using UV resonance Raman (UVRR) combined with molecular orbital density functional theory calculations. The pH values of the acid solutions were based on the p Ka's for the different acids to examine the neutral and charged species. Deprotonation of the organic acids was detectable down to 10 -4 M using UVRR (two orders of magnitude lower than previous vibrational spectroscopy studies). Limitations to decreasing the concentration lower using the current UVRR facilities are discussed. Two methods were used to calculate the optimized geometry and frequencies of the acids: explicit and continuum solvation. The frequencies from the experimental spectra were then compared to the theoretical results obtained from the two methods.

  7. Density functional theory study, FT-IR and FT-Raman spectra and SQM force field calculation for vibrational analysis of 1, 3-Bis (hydroxymethyl) benzimidazolin-2-one

    NASA Astrophysics Data System (ADS)

    Joseph, Lynnette; Sajan, D.; Chaitanya, K.; Devarajegowda, H. C.; Isac, Jayakumary

    2013-10-01

    FT-IR and FT-Raman spectra of 1, 3-Bis (hydroxymethyl) benzimidazolin-2-one were recorded and analyzed in the solid phase. The optimized molecular geometry and vibrational wavenumbers have also been calculated in optimized structure by using DFT method. Scaled quantum mechanical force fields have also been used to calculate potential energy distributions in order to make conspicuous vibrational assignments. The red shifting of the Osbnd H stretching wavenumber is due to the formation of Osbnd H⋯O intermolecular hydrogen bonding. The lowering and splitting of the carbonyl stretching vibrational modes is assigned to the intermolecular association based on Cdbnd O⋯H type hydrogen bonding in the molecule. Chemical interpretation of hyperconjugative interactions was done by natural bond orbital analysis.

  8. Density functional theory study, FT-IR and FT-Raman spectra and SQM force field calculation for vibrational analysis of 1, 3-Bis (hydroxymethyl) benzimidazolin-2-one.

    PubMed

    Joseph, Lynnette; Sajan, D; Chaitanya, K; Devarajegowda, H C; Isac, Jayakumary

    2013-10-01

    FT-IR and FT-Raman spectra of 1, 3-Bis (hydroxymethyl) benzimidazolin-2-one were recorded and analyzed in the solid phase. The optimized molecular geometry and vibrational wavenumbers have also been calculated in optimized structure by using DFT method. Scaled quantum mechanical force fields have also been used to calculate potential energy distributions in order to make conspicuous vibrational assignments. The red shifting of the O-H stretching wavenumber is due to the formation of O-H···O intermolecular hydrogen bonding. The lowering and splitting of the carbonyl stretching vibrational modes is assigned to the intermolecular association based on C=O···H type hydrogen bonding in the molecule. Chemical interpretation of hyperconjugative interactions was done by natural bond orbital analysis. PMID:23792238

  9. FT-IR, FT-Raman, NMR and UV-Vis spectra and DFT calculations of 5-bromo-2-ethoxyphenylboronic acid (monomer and dimer structures).

    PubMed

    Sas, E B; Kose, E; Kurt, M; Karabacak, M

    2015-02-25

    In this study, the Fourier Transform Infrared (FT-IR) and Fourier Transform Raman (FT-Raman) spectra of 5-bromo-2-ethoxyphenylboronic acid (5Br2EPBA) are recorded in the solid phase in the region 4000-400 cm(-1) and 3500-10 cm(-1), respectively. The (1)H, (13)C and DEPT nuclear magnetic resonance (NMR) spectra are recorded in DMSO solution. The UV-Vis absorption spectrum of 5Br2EPBA is saved in the range of 200-400 nm in ethanol and water. The following theoretical calculations for monomeric and dimeric structures are supported by experimental results. The molecular geometry and vibrational frequencies in the ground state are calculated by using DFT methods with 6-31G(d,p) and 6-311G(d,p) basis sets. There are four conformers for the present molecule. The computational results diagnose the most stable conformer of 5Br2EPBA as Trans-Cis (TC) form. The complete assignments are performed on the basis of the total energy distribution (TED) of vibrational modes, calculated with scaled quantum mechanics (SQM) method in parallel quantum solutions (PQS) program. The (1)H and (13)C NMR chemical shifts of 5Br2EPBA molecule are calculated by using the Gauge Invariant Atomic Orbital (GIAO) method in DMSO and gas phase for monomer and dimer structures of the most stable conformer. Moreover, electronic properties, such as the HOMO and LUMO energies (by TD-DFT and CIS methods) and molecular electrostatic potential surface (MEPs) are investigated. Stability of the molecule arising from hyper-conjugative interactions, charge delocalization is analyzed using natural bond orbital (NBO) analysis. Nonlinear optical (NLO) properties and thermodynamic features are presented. All calculated results are compared with the experimental data of the title molecule. The correlation of theoretical and experimental results provides a detailed description of the structural and physicochemical properties of the title molecule.

  10. FT-IR, FT-Raman, NMR and UV-Vis spectra and DFT calculations of 5-bromo-2-ethoxyphenylboronic acid (monomer and dimer structures).

    PubMed

    Sas, E B; Kose, E; Kurt, M; Karabacak, M

    2015-02-25

    In this study, the Fourier Transform Infrared (FT-IR) and Fourier Transform Raman (FT-Raman) spectra of 5-bromo-2-ethoxyphenylboronic acid (5Br2EPBA) are recorded in the solid phase in the region 4000-400 cm(-1) and 3500-10 cm(-1), respectively. The (1)H, (13)C and DEPT nuclear magnetic resonance (NMR) spectra are recorded in DMSO solution. The UV-Vis absorption spectrum of 5Br2EPBA is saved in the range of 200-400 nm in ethanol and water. The following theoretical calculations for monomeric and dimeric structures are supported by experimental results. The molecular geometry and vibrational frequencies in the ground state are calculated by using DFT methods with 6-31G(d,p) and 6-311G(d,p) basis sets. There are four conformers for the present molecule. The computational results diagnose the most stable conformer of 5Br2EPBA as Trans-Cis (TC) form. The complete assignments are performed on the basis of the total energy distribution (TED) of vibrational modes, calculated with scaled quantum mechanics (SQM) method in parallel quantum solutions (PQS) program. The (1)H and (13)C NMR chemical shifts of 5Br2EPBA molecule are calculated by using the Gauge Invariant Atomic Orbital (GIAO) method in DMSO and gas phase for monomer and dimer structures of the most stable conformer. Moreover, electronic properties, such as the HOMO and LUMO energies (by TD-DFT and CIS methods) and molecular electrostatic potential surface (MEPs) are investigated. Stability of the molecule arising from hyper-conjugative interactions, charge delocalization is analyzed using natural bond orbital (NBO) analysis. Nonlinear optical (NLO) properties and thermodynamic features are presented. All calculated results are compared with the experimental data of the title molecule. The correlation of theoretical and experimental results provides a detailed description of the structural and physicochemical properties of the title molecule. PMID:25305625

  11. FT-IR, FT-Raman, NMR and UV-Vis spectra and DFT calculations of 5-bromo-2-ethoxyphenylboronic acid (monomer and dimer structures)

    NASA Astrophysics Data System (ADS)

    Sas, E. B.; Kose, E.; Kurt, M.; Karabacak, M.

    2015-02-01

    In this study, the Fourier Transform Infrared (FT-IR) and Fourier Transform Raman (FT-Raman) spectra of 5-bromo-2-ethoxyphenylboronic acid (5Br2EPBA) are recorded in the solid phase in the region 4000-400 cm-1 and 3500-10 cm-1, respectively. The 1H, 13C and DEPT nuclear magnetic resonance (NMR) spectra are recorded in DMSO solution. The UV-Vis absorption spectrum of 5Br2EPBA is saved in the range of 200-400 nm in ethanol and water. The following theoretical calculations for monomeric and dimeric structures are supported by experimental results. The molecular geometry and vibrational frequencies in the ground state are calculated by using DFT methods with 6-31G(d,p) and 6-311G(d,p) basis sets. There are four conformers for the present molecule. The computational results diagnose the most stable conformer of 5Br2EPBA as Trans-Cis (TC) form. The complete assignments are performed on the basis of the total energy distribution (TED) of vibrational modes, calculated with scaled quantum mechanics (SQM) method in parallel quantum solutions (PQS) program. The 1H and 13C NMR chemical shifts of 5Br2EPBA molecule are calculated by using the Gauge Invariant Atomic Orbital (GIAO) method in DMSO and gas phase for monomer and dimer structures of the most stable conformer. Moreover, electronic properties, such as the HOMO and LUMO energies (by TD-DFT and CIS methods) and molecular electrostatic potential surface (MEPs) are investigated. Stability of the molecule arising from hyper-conjugative interactions, charge delocalization is analyzed using natural bond orbital (NBO) analysis. Nonlinear optical (NLO) properties and thermodynamic features are presented. All calculated results are compared with the experimental data of the title molecule. The correlation of theoretical and experimental results provides a detailed description of the structural and physicochemical properties of the title molecule.

  12. Gas chromatographic determination of cyclohexanone leached from hemodialysis tubing.

    PubMed

    Snell, R P

    1993-01-01

    A capillary gas chromatographic procedure is described for the determination of cyclohexanone leached from hemodialysis tubing by water. Recoveries were 100% at 2.0 mg/100 mL (20 ppm), 99.0% at 500 microg/100 mL (5 ppm), and 106% at 1.0 microg/100 mL (10 ppb). Reproducibility of the system was 0.152% for 3.0 microL injections of a solution containing cyclohexanone at 5.58 microg/mL. Correlation coefficients were 0.9983 for 0.3672-3.672 ng and 1.0000 for 3.672-367.2 ng. Twenty hemodialysis tubing sets from 4 manufacturers were examined. The leachable cyclohexanone ranged from 1.02 to 43.7 ppm per set. Rinsing the tubing with 1 L 0.9% sodium chloride solution did not remove significant amounts (P = 0.05) of leachable cyclohexanone.

  13. Filling in of Fraunhofer and gas-absorption lines in sky spectra as caused by rotational Raman scattering.

    PubMed

    Sioris, C E; Evans, W F

    1999-04-20

    A line-by-line radiative-transfer model to quantify the Ring effect as caused by rotational Raman scattering has been developed for the 310-550-nm spectral interval. The solar zenith angle and the resolution are key input parameters, as is the sky spectrum (excluding inelastic atmospheric scattering), which was modeled with MODTRAN 3.5. The filling in is modeled for ground-based viewing geometry and includes surface reflection and single inelastic scattering. It is shown that O2 contributes half of the filling in of N2. A strong inverse relationship with wavelength is noted in the filling in. A comparison with observations shows moderate agreement. The largest filling in occurs in the Ca II K and H lines.

  14. Resonance Raman and temperature-dependent electronic absorption spectra of cavity and noncavity models of the hydrated electron

    PubMed Central

    Casey, Jennifer R.; Larsen, Ross E.; Schwartz, Benjamin J.

    2013-01-01

    Most of what is known about the structure of the hydrated electron comes from mixed quantum/classical simulations, which depend on the pseudopotential that couples the quantum electron to the classical water molecules. These potentials usually are highly repulsive, producing cavity-bound hydrated electrons that break the local water H-bonding structure. However, we recently developed a more attractive potential, which produces a hydrated electron that encompasses a region of enhanced water density. Both our noncavity and the various cavity models predict similar experimental observables. In this paper, we work to distinguish between these models by studying both the temperature dependence of the optical absorption spectrum, which provides insight into the balance of the attractive and repulsive terms in the potential, and the resonance Raman spectrum, which provides a direct measure of the local H-bonding environment near the electron. We find that only our noncavity model can capture the experimental red shift of the hydrated electron’s absorption spectrum with increasing temperature at constant density. Cavity models of the hydrated electron predict a solvation structure similar to that of the larger aqueous halides, leading to a Raman O–H stretching band that is blue-shifted and narrower than that of bulk water. In contrast, experiments show the hydrated electron has a broader and red-shifted O–H stretching band compared with bulk water, a feature recovered by our noncavity model. We conclude that although our noncavity model does not provide perfect quantitative agreement with experiment, the hydrated electron must have a significant degree of noncavity character. PMID:23382233

  15. [Screening and function analysis of a cyclohexanone-degrading bacterium CN1 from deep sea sediment].

    PubMed

    Li, Hu; Shao, Zong-Ze

    2007-10-01

    Micrococcu luteus CN1 was found to be able to utilize cyclohexanone well from the strains originally isolated from Pacific Ocean sediment. The optimum conditions for its growth were determined as 25 degrees C -37 degrees C, pH 8, salinity 6%. It could survive in the medium with high concentration of cyclohexanone ( > 44% V/V), and grew most vigorously in medium with 16.7% (V/V) cyclohexanone. CN1 could transform cyclohexanol to cyclohexanone which could be further degraded and mineralized quickly. This indicated the presence of cyclohexanol dehydrogenase and probable presence of cyclohexanone monooxygenase. With degenerate PCR for cloning part of cyclohexanone monooxygenase gene, the DNA fragment of 450bp was gotten. Amino acid sequence analysis showed that it owned the conserved sequence of the Baeyer-Villiger monooxygenase family and had the highest homology of 80% with cyclohexanone monooxygenase from Arthrobacter sp. BP2, only 53% with that from Acinetobacter sp. NCIMB 9871 which had been the most deeply investigated. So far as we know, both cyclohexanol and cyclohexanone degradation resorted to cyclohexanone monooxygenase. So this gene should be responsible for cyclohexanone degradation in CN1. All the cyclohexanone-degraders previously reported could degrade cyclopentanone, but, CN1 did not degrade cyclopentanone. This indicated that cyclohexanone monooxygenase in CN1 was special. Additionally, it was found for the first time that cyclohexanol could inhibit cyclohexanone degradation to certain degree in CN1.

  16. Low-frequency vibrations in resonance Raman spectra of horse heart myoglobin. Iron-ligand and iron-nitrogen vibrational modes.

    PubMed

    Desbois, A; Lutz, M; Banerjee, R

    1979-04-17

    The low-frequency regions (150--700 cm-1) of resonance Raman (RR) spectra of various complexes of oxidized and reduced horse heart myoglobin were examined by use of 441.6-nm excitation. In this frequency range, RR spectra show 10 bands common to all myoglobin derivatives (numbered here for convenience from I to X). Relative intensities of bands IV, V, and X constitute good indicators of the doming state of the heme and, consequently, of the spin state of the iron atom. An additional band is present for several complexes (fluorometmyoglobin, hydroxymetmyoglobin, azidometmyoglobin, and oxymyoglobin). Isotopic substitutions on the exogenous ligands and of the iron atom (56Fe leads to 54Fe) allow us to assign these additional lines to the stretching vibrations of the Fe-sixth ligand bond. Similarly, bands II are assigned to stretching vibrations of the Fe-N-(pyrrole) bonds. An assignment of bands VI to stretching vibrations of the Fe-Nepsilon(proximal histidine) bonds is also proposed. Mechanisms for the resonance enhancement of the main low-frequency bands are discussed on the basis of the excitation profiles and of the dispersion curves for depolarization ratios obtained for fluorometmyoglobin and hydroxymetmyoglobin.

  17. Time-Dependent Approach to Resonance Raman Spectra Including Duschinsky Rotation and Herzberg-Teller Effects: Formalism and Its Realistic Applications.

    PubMed

    Ma, Huili; Liu, Jie; Liang, WanZhen

    2012-11-13

    Efficient quantum dynamical and electronic structure approaches are presented to calculate resonance Raman spectroscopy (RRS) with inclusion of Herzberg-Teller (HT) contribution and mode-mixing (Duschinsky) effect. In the dynamical method, an analytical expression for RRS in the time domain is proposed to avoid summation over the large number of intermediate vibrational states. In the electronic structure calculations, the analytic energy-derivative approaches for the excited states within the time-dependent density functional theory (TDDFT), developed by us, are adopted to overcome the computational bottleneck of excited-state gradient and Hessian calculations. In addition, an analytic calculation to the geometrical derivatives of the transition dipole moment, entering the HT term, is also adopted. The proposed approaches are implemented to calculate RR spectra of a few of conjugated systems, phenoxyl radical, 2-thiopyridone in water solution, and free-base porphyrin. The calculated RR spectra show the evident HT effect in those π-conjugated systems, and their relative intensities are consistent with experimental measurements.

  18. Line mixing effects in isotropic Raman spectra of pure N{sub 2}: A classical trajectory study

    SciTech Connect

    Ivanov, Sergey V.; Boulet, Christian; Buzykin, Oleg G.; Thibault, Franck

    2014-11-14

    Line mixing effects in the Q branch of pure N{sub 2} isotropic Raman scattering are studied at room temperature using a classical trajectory method. It is the first study using an extended modified version of Gordon's classical theory of impact broadening and shift of rovibrational lines. The whole relaxation matrix is calculated using an exact 3D classical trajectory method for binary collisions of rigid N{sub 2} molecules employing the most up-to-date intermolecular potential energy surface (PES). A simple symmetrizing procedure is employed to improve off-diagonal cross-sections to make them obeying exactly the principle of detailed balance. The adequacy of the results is confirmed by the sum rule. The comparison is made with available experimental data as well as with benchmark fully quantum close coupling [F. Thibault, C. Boulet, and Q. Ma, J. Chem. Phys. 140, 044303 (2014)] and refined semi-classical Robert-Bonamy [C. Boulet, Q. Ma, and F. Thibault, J. Chem. Phys. 140, 084310 (2014)] results. All calculations (classical, quantum, and semi-classical) were made using the same PES. The agreement between classical and quantum relaxation matrices is excellent, opening the way to the analysis of more complex molecular systems.

  19. Raman spectra of oriented and non-oriented Cu hydroxy-phosphate minerals: libethenite, cornetite, pseudomalachite, reichenbachite and ludjibaite.

    PubMed

    Kharbish, Sherif; Andráš, Peter; Luptáková, Jarmila; Milovská, Stanislava

    2014-09-15

    Oriented cornetite [Cu3PO4(OH)3], libethenite [Cu2PO4(OH)] and pseudomalachite [Cu5(PO4)2(OH)4] and non-oriented reichenbachite [Cu5(PO4)2(OH)4] and ludjibaite [Cu5(PO4)2(OH)4] minerals from Ľubietová and Špania Dolina dump fields, Banská Bystrica, Slovakia were examined by polarized Raman spectroscopy. The examined minerals display the characteristic vibrational modes of PO4 and OH groups and further lattice modes. The PO4 stretching and bending vibrations of the investigated minerals occur between 1150 and 900 cm(-1) and between 700 and 350 cm(-1), respectively. On the other hand, the hydroxyl group stretching and bending modes appear above 3350 cm(-1) and between 900 and 700 cm(-1), respectively. The lattice vibrations occur below 350 cm(-1). The different bond distances of the PO4 groups readily explain the shift of the bands to higher or lower wavenumbers among the studied Cu hydroxy-phosphate minerals.

  20. Chronic toxicity study of cyclohexanone in rats and mice.

    PubMed

    Lijinsky, W; Kovatch, R M

    1986-10-01

    A 2-year chronic toxicity assay of cyclohexanone (CAS: 108-94-1) was conducted in F344 rats and (C57BL/6 X C3H)F1 mice by administering a solution of cyclohexanone in drinking water. Two concentrations were given to rats, 6,500 and 3,300 ppm (wt/vol). Male mice received 13,000 and 6,500 ppm, while female mice were given three concentrations, 25,000, 13,000, and 6,500 ppm. Each treatment group consisted of 50 or 52 male and 50 or 52 female rats or mice, except 47 male mice treated with the highest dose and 41 female mice treated with the highest dose, and there was a group of untreated controls of each species. Survival and weight gain were similar to those of controls at the lowest cyclohexanone dose in both sexes of both species, but weight gain was depressed at all of the higher doses. Survival was good (greater than 80% at 90 wk) in all groups except in female mice at the 2 highest doses; at 25,000 ppm of cyclohexanone, only 50% of mice lived beyond 1 year. Most of the neoplasms in the treated groups did not differ significantly in number from those in the controls. Male rats receiving 3,300 ppm cyclohexanone had a 13% incidence of adrenal cortex adenomas (7 animals) compared with an incidence of 2% in controls; the incidence of this neoplasm did not increase in the male rats receiving 6,500 ppm or in the female rats given either dose. The mice had a statistically significant increase in incidence of lymphomas-leukemias among the females given 6,500 ppm, but not among the groups given higher doses of cyclohexanone. Male mice given 6,500 ppm cyclohexanone showed an increased incidence of hepatocellular adenomas and carcinomas, 50% versus 32.5% in controls, but the incidence of these neoplasms was only 37% in the male mice given 13,000 ppm cyclohexanone. The incidence of lymphomas in male mice and of hepatocellular neoplasms in female mice given cyclohexanone did not differ from that in the controls. The evidence for carcinogenic activity of cyclohexanone is

  1. Raman spectra, ab initio molecular orbital calculations, vibrational analysis, and thermodynamic functions for NH/sub 3/:AlX/sub 3/ (X = F, Cl, Br)

    SciTech Connect

    Papatheodorou, G.N.; Curtiss, L.A.; Maroni, V.A.

    1983-03-15

    Raman spectra of gaseous NH/sub 3/:AlCl/sub 3/ and NH/sub 3/:AlBr/sub 3/ were recorded at 400 /sup 0/C. The observed Raman frequencies in combination with reported infrared frequencies for NH/sub 3/:AlCl/sub 3/ and ab initio molecular orbital calculations on NH/sub 3/:AlCl/sub 3/ and NH/sub 3/:AlF/sub 3/ were used to derive force constants for all three NH/sub 3/:AlX/sub 3/ complexes (X = F, Cl, Br) based on an adjusted valence force field (AVFF) concept. The resulting force constant calculations produced complete sets of A/sub 1/ and E mode frequencies for each complex. Statistical mechanical analyses were then performed using the A/sub 1/ and E mode frequencies together with estimated values for the torsional mode of each complex and published enthalpy data. From these analyses, the relative thermodynamic stability of each complex was determined. At 700 and 1000 K, NH/sub 3/:AlCl/sub 3/ was found to be more stable than NH/sub 3/:AlBr/sub 3/. It was further predicted that the reaction of gaseous NH/sub 3/ with solid AlF/sub 3/ to form NH/sub 3/:AlF/sub 3/ is not favored in this temperature range, which provides an explanation for the lack of success in prior efforts to produce NH/sub 3/:AlF/sub 3/.

  2. Ab Initio Calculation Of Vibrational Frequencies In AsxS1-x Glass And The Raman Spectra

    NASA Astrophysics Data System (ADS)

    Rosli, Ahmad Nazrul; Kassim, Hasan Abu; Shrivastava, Keshav N.

    2009-06-01

    We have made many different models for the understanding of the structure of AsS glass. In particular, we made the models of AsS3 (triangular), AsS3 (pyramid), AsS4 (3S on one side, one on the other side of As, S3-As-S), AsS4 (pyramid), AsS4 (tetrahedral), AsS7, As2S6 (dumb bell), As2S3 (bipyramid), As2S3 (zig-zag), As3S2 (bipyramid), As3S2 (linear), As4S4 (cubic), As4S4 (ring), As4S (tetrahedral), As4S (pyramid), As4S3 (linear) and As6S2 (dumb bell) by using the density functional theory which solves the Schrödinger equation for the given number of atoms in a cluster in the local density approximation. The models are optimized for the minimum energy which determines the structures, bond lengths and angles. For the optimized clusters, we calculated the vibrational frequencies in each case by calculating the gradients of the first principles potential. We compare the experimentally observed Raman frequencies with those calculated so that we can identify whether the cluster is present in the glass. In this way we find that AsS4 (S3-As-S), As4S4 (ring), As2S3 (bipyramid), As4S4 (cubic), As4S3 (linear), As2S3 (zig-zag), AsS4 (Td), As2S6 (dumb bell), AsS3 (triangle) and AsS3 (pyramid) structures are present in the actual glass.

  3. High resolution infrared and Raman spectra of {sup 13}C{sup 12}CD{sub 2}: The CD stretching fundamentals and associated combination and hot bands

    SciTech Connect

    Di Lonardo, G.; Fusina, L. Canè, E.; Tamassia, F.; Martínez, R. Z.; Bermejo, D.

    2015-09-07

    Infrared and Raman spectra of mono {sup 13}C fully deuterated acetylene, {sup 13}C{sup 12}CD{sub 2}, have been recorded and analysed to obtain detailed information on the C—D stretching fundamentals and associated combination, overtone, and hot bands. Infrared spectra were recorded at an instrumental resolution ranging between 0.006 and 0.01 cm{sup −1} in the region 1800–7800 cm{sup −1}. Sixty new bands involving the ν{sub 1} and ν{sub 3} C—D stretching modes also associated with the ν{sub 4} and ν{sub 5} bending vibrations have been observed and analysed. In total, 5881 transitions have been assigned in the investigated spectral region. In addition, the Q branch of the ν{sub 1} fundamental was recorded using inverse Raman spectroscopy, with an instrumental resolution of about 0.003 cm{sup −1}. The transitions relative to each stretching mode, i.e., the fundamental band, its first overtone, and associated hot and combination bands involving bending states with υ{sub 4} + υ{sub 5} up to 2 were fitted simultaneously. The usual Hamiltonian appropriate to a linear molecule, including vibration and rotation l-type and the Darling–Dennison interaction between υ{sub 4} = 2 and υ{sub 5} = 2 levels associated with the stretching states, was adopted for the analysis. The standard deviation for each global fit is ≤0.0004 cm{sup −1}, of the same order of magnitude of the measurement precision. Slightly improved parameters for the bending and the ν{sub 2} manifold have been also determined. Precise values of spectroscopic parameters deperturbed from the resonance interactions have been obtained. They provide quantitative information on the anharmonic character of the potential energy surface, which can be useful, in addition to those reported in the literature, for the determination of a general anharmonic force field for the molecule. Finally, the obtained values of the Darling–Dennison constants can be valuable for understanding energy flows

  4. Picosecond near-infrared excited transient Raman spectra of β-carotene in the excited S 2 state: Solvent effects on the in-phase C dbnd C stretching band and vibronic coupling

    NASA Astrophysics Data System (ADS)

    Sakamoto, Akira; Matsuno, Shinya; Tasumi, Mitsuo

    2010-07-01

    Picosecond time-resolved Raman spectra of β-carotene in the excited S 2 ( 1Bu+) state have been obtained in resonance with its near-infrared transient absorption. The Raman band due to the in-phase C dbnd C stretching mode of β-carotene in the S 2 state has been observed at about 1550 cm -1. The solvent effects on this band are discussed in comparison with the previous results on the corresponding bands in the ground S 0 ( 1Ag-) state and the excited S 1 ( 2Ag-) state.

  5. Cholesterol complexes with tri-n-butylphosphate, tri-n-octylamine and cyclohexanone in chlorinated hydrocarbon solvents.

    PubMed

    Senegacnik, Marjan; Klofutar, Cveto

    2007-04-01

    The hydrogen bonding interactions of moderately associated cholesterol with tri-n-butylphosphate, tri-n-octylamine and cyclohexanone in dilute solutions of tetrachloromethane, 1,2-dichloroethane and trichloromethane were studied by conventional IR spectroscopy. Information on the stoichiometry of the complexes formed was derived from least squares plots of the linearized expressions of Bjerrum's degree of system formation. The formation constants of the complexes were also determined in this way. The spectra recorded in the OH region from 3100 to 3700 cm-1 were resolved in to the bands of the cholesterol species and the complexes formed. The complexes responsible for the observed bands were recognized from the dependence of their intensity on cholesterol monomer and free base concentration and from their frequency locations. The presence of the complexes B...HO(R) and B...HO(R)...HO(R) with tri-n-butylphosphate and tri-n-octylamine was established in all of the solutions and also for the system cholesterol+cyclohexanone in 1,2-dichloroethane. On the other hand, for cholesterol bonding to cyclohexanone in tetrachloromethane, the model considering complexes with 3:1 and 1:1 stoichiometry seemed the most appropriate.

  6. Conformational stability, vibrational (FT-IR and FT-Raman) spectra and computational analysis of m-trifluoromethyl benzoic acid

    NASA Astrophysics Data System (ADS)

    Balachandran, V.; Karpagam, V.; Santhi, G.; Revathi, B.; Ilango, G.; Kavimani, M.

    2015-02-01

    In this work, the vibrational characteristics of m-trifluoromethyl benzoic acid have been investigated and both the experimental and theoretical vibrational data indicate the presence of functional groups in the title molecule. The density functional theoretical (DFT) computations were performed at the B3LYP/6-31G (d, p), LSDA/6-31G (d, p), MP2/6-31G (d, p) levels to derive the optimized geometry, vibrational wavenumbers. Furthermore, the molecular orbital calculations such as natural bond orbitals (NBO), HOMO-LUMO energy gap and Mapped molecular electrostatic potential (MEP) surfaces, The Mulliken charges, the first-order hyperpolarizability were also performed with the same level of DFT. The thermal flexibility of molecule in associated with vibrational temperature was also illustrated on the basis of correlation graphs. The detailed interpretation of the vibrational spectra has been carried out with the aid of potential energy distribution (PED) results obtained from MOLVIB program. The delocalization of electron density of various constituents of the molecule has been discussed with the aid of NBO and HOMO-LUMO energy gap analysis.

  7. Conformational stability, vibrational (FT-IR and FT-Raman) spectra and computational analysis of m-trifluoromethyl benzoic acid.

    PubMed

    Balachandran, V; Karpagam, V; Santhi, G; Revathi, B; Ilango, G; Kavimani, M

    2015-02-25

    In this work, the vibrational characteristics of m-trifluoromethyl benzoic acid have been investigated and both the experimental and theoretical vibrational data indicate the presence of functional groups in the title molecule. The density functional theoretical (DFT) computations were performed at the B3LYP/6-31G (d, p), LSDA/6-31G (d, p), MP2/6-31G (d, p) levels to derive the optimized geometry, vibrational wavenumbers. Furthermore, the molecular orbital calculations such as natural bond orbitals (NBO), HOMO-LUMO energy gap and Mapped molecular electrostatic potential (MEP) surfaces, The Mulliken charges, the first-order hyperpolarizability were also performed with the same level of DFT. The thermal flexibility of molecule in associated with vibrational temperature was also illustrated on the basis of correlation graphs. The detailed interpretation of the vibrational spectra has been carried out with the aid of potential energy distribution (PED) results obtained from MOLVIB program. The delocalization of electron density of various constituents of the molecule has been discussed with the aid of NBO and HOMO-LUMO energy gap analysis.

  8. Isomerization and Fragmentation of Cyclohexanone in a Heated Micro-Reactor.

    PubMed

    Porterfield, Jessica P; Nguyen, Thanh Lam; Baraban, Joshua H; Buckingham, Grant T; Troy, Tyler P; Kostko, Oleg; Ahmed, Musahid; Stanton, John F; Daily, John W; Ellison, G Barney

    2015-12-24

    The thermal decomposition of cyclohexanone (C6H10═O) has been studied in a set of flash-pyrolysis microreactors. Decomposition of the ketone was observed when dilute samples of C6H10═O were heated to 1200 K in a continuous flow microreactor. Pyrolysis products were detected and identified by tunable VUV photoionization mass spectroscopy and by photoionization appearance thresholds. Complementary product identification was provided by matrix infrared absorption spectroscopy. Pyrolysis pressures were roughly 100 Torr, and contact times with the microreactors were roughly 100 μs. Thermal cracking of cyclohexanone appeared to result from a variety of competing pathways, all of which open roughly simultaneously. Isomerization of cyclohexanone to the enol, cyclohexen-1-ol (C6H9OH), is followed by retro-Diels-Alder cleavage to CH2═CH2 and CH2═C(OH)-CH═CH2. Further isomerization of CH2═C(OH)-CH═CH2 to methyl vinyl ketone (CH3CO-CH═CH2, MVK) was also observed. Photoionization spectra identified both enols, C6H9OH and CH2═C(OH)-CH═CH2, and the ionization threshold of C6H9OH was measured to be 8.2 ± 0.1 eV. Coupled cluster electronic structure calculations were used to establish the energetics of MVK. The heats of formation of MVK and its enol were calculated to be ΔfH298(cis-CH3CO-CH═CH2) = -26.1 ± 0.5 kcal mol(-1) and ΔfH298(s-cis-1-CH2═C(OH)-CH═CH2) = -13.7 ± 0.5 kcal mol(-1). The reaction enthalpy ΔrxnH298(C6H10═O → CH2═CH2 + s-cis-1-CH2═C(OH)-CH═CH2) is 53 ± 1 kcal mol(-1) and ΔrxnH298(C6H10═O → CH2═CH2 + cis-CH3CO-CH═CH2) is 41 ± 1 kcal mol(-1). At 1200 K, the products of cyclohexanone pyrolysis were found to be C6H9OH, CH2═C(OH)-CH═CH2, MVK, CH2CHCH2, CO, CH2═C═O, CH3, CH2═C═CH2, CH2═CH-CH═CH2, CH2═CHCH2CH3, CH2═CH2, and HC≡CH.

  9. Finite temperature effects on the X-ray absorption spectra of lithium compounds: first-principles interpretation of X-ray Raman measurements.

    PubMed

    Pascal, Tod A; Boesenberg, Ulrike; Kostecki, Robert; Richardson, Thomas J; Weng, Tsu-Chien; Sokaras, Dimosthenis; Nordlund, Dennis; McDermott, Eamon; Moewes, Alexander; Cabana, Jordi; Prendergast, David

    2014-01-21

    We elucidate the role of room-temperature-induced instantaneous structural distortions in the Li K-edge X-ray absorption spectra (XAS) of crystalline LiF, Li2SO4, Li2O, Li3N, and Li2CO3 using high resolution X-ray Raman spectroscopy (XRS) measurements and first-principles density functional theory calculations within the eXcited electron and Core Hole approach. Based on thermodynamic sampling via ab initio molecular dynamics simulations, we find calculated XAS in much better agreement with experiment than those computed using the rigid crystal structure alone. We show that local instantaneous distortion of the atomic lattice perturbs the symmetry of the Li 1s core-excited-state electronic structure, broadening spectral line-shapes and, in some cases, producing additional spectral features. The excellent agreement with high-resolution XRS measurements validates the accuracy of our first-principles approach to simulating XAS, and provides both accurate benchmarks for model compounds and a predictive theoretical capability for identification and characterization of multi-component systems, such as lithium-ion batteries, under working conditions.

  10. Analysis of the infrared and Raman spectra of the symmetrically substituted 1,3-diphenylurea and 1,3-diphenylacetone (dibenzyl ketone)

    NASA Astrophysics Data System (ADS)

    Badawi, Hassan M.; Förner, Wolfgang

    The structural stability of 1,3-diphenylurea and 1,3-diphenylacetone was investigated by the DFT-B3LYP and ab initio MP2 calculations using the 6-311G** basis set. From full energy optimization at the MP2 level of theory the near-planar cis-trans form of 1,3-diphenylurea was predicted to be about 1.5 kcal/mol lower in energy than the X-ray near-planar cis-cis conformer. At the DFT-B3LYP level of theory the near-planar cis-trans and cis-cis forms were predicted to have a very comparable relative stability. The dibenzyl ketone was predicted by both levels to exist predominantly in a gauche-gauche conformation. On comparison the DFT near-planar structures of each of the two molecules were found to be consistent with the reported X-ray structures. The analysis of the infrared and Raman spectra of 1,3-diphenylurea suggests the presence of a second form at room temperature. The vibrational frequencies of the conformers most consistent with X-ray data of diphenylurea and dibenzyl ketone were computed at the B3LYP level and tentative vibrational assignments of their normal modes were provided on the basis of combined experimental and computed data.

  11. Composition Dependent Analysis of Raman Spectra in the Modified Boroaluminosilicate System: Implications for Coupling Between Structural Resonance and Relaxation in the Glass Network

    SciTech Connect

    S. V. Raman; R. S. Czernuszewicz; A. A. Zareba

    2004-04-01

    The boroaluminosilicate system was systematically modified by addition of magnesium, sodium and zirconium oxides. Strong bridging silicate bands and narrow and intense nonbridging silicate bands compose the Raman spectra of glasses. The fundamental nonbridging molecular species bands are related to the bridged network bands by the first overtone and signify anharmonic oscillation. At a constant degree of depolymerisation, the nonbridging band intensity depends on the silica content. With decrease in silica content, the bridged network band frequency shifts to a higher value and simultaneously the nonbridging bands intensify. The sharp rise in intensity for the nonbridging bands is attributed to resonant oscillations between the bridged lattice network and nonbridging molecular species. The resonance between the two structural entities possibly occurs in response to relaxation of the bridged network with decrease in silica content. Contributions to enhancement of intensity also presumably arise from resonance in valency bonds and oscillations in the oxygen edge shared polyhedral (ESP) structure for the nonbridging molecular species. The force constant of the ESP species varies as a function of zirconium, sodium and magnesium coordination to apex nonbridging oxygens. The single ESP band transforms to Fermi doublet upon crystallisation to orthosilicate structures of zircon and forsterite. 32 refs.

  12. FT-IR, FT-Raman, UV/Vis spectra and fluorescence imaging studies on 2-(bromoacetyl)benzo(b)furan by ab initio DFT calculations.

    PubMed

    Veeraiah, A

    2015-08-01

    The vibrational and electronic properties of 2-(bromoacetyl)benzo(b)furan have been studied in the ground state using experimental techniques (FT-IR, FT-Raman and UV) and density functional theory (DFT) employing B3LYP exchange correlation with the 6-31G(d,p) basis set. The theoretically calculated optimized parameters, vibrational frequencies etc., were compared with the experimental values, which yield good agreement between the observed and calculated values. The complete assignments of fundamental modes were performed on the basis of the potential energy distribution (PED). UV-visible spectrum of the compound was recorded in the region 300-600 nm and compared with the theoretical spectrum obtained from SAC-CI calculations. A good agreement is observed between the experimental and theoretical spectra. Fluorescence microscopic imaging studies proved that the compound can be used as one of the potential light sources in the yellow region with suitable excitation. Further, the predicted electronic transitions between the MOs 47→64, 52→62, 56→65, 56→72, 56→77 of the compound show a strong line at 569.8 nm.

  13. Liquid-phase oxidation of cyclohexanone over cerium oxide catalyst

    SciTech Connect

    Shen, H.C. ); Weng, H.S. )

    1990-05-01

    Catalytic oxidation of cyclohexanone in the liquid phase with glacial acetic acid as the solvent over cerium oxide was studied between 5 and 15 atm and 98 and 118 {degrees} C in a batch reactor. The products were adipic acid, glutaric acid, succinic acid, caprolactone, carbon oxides, etc. The reaction undergoes a short induction period prior to a rapid reaction regime. In both regimes, the reaction is independent of oxygen pressure when the system pressure is above 10 atm. The induction period is inversely proportional to both of the catalyst weight and cyclohexanone concentration.During the rapid reaction regime, the reaction rate was found to be proportional to the 0.5 power of the catalyst weight and to the 1.5 power of the cyclohexanone concentration. Reaction mechanisms and rate expressions are proposed. The carbon oxides produced in this study were much lower than those previously reported. The cerium oxide catalyst is stable during the reaction.

  14. 2-Amino-3,5-dichlorobenzonitrile: DFT calculations in the monomer and dimer forms, FT-IR and FT-Raman spectra, molecular geometry, atomic charges and thermodynamical parameters.

    PubMed

    Rastogi, V K; Alcolea Palafox, M; Tomar, Rashmi; Singh, Upama

    2013-06-01

    The experimental IR and Raman spectra of 2-amino-3,5-dichlorobenzonitrile molecule were recorded, and the results compared with theoretical values. Molecular geometry, vibrational wavenumbers and thermodynamic parameters were calculated using MP2 and DFT quantum chemical methods. With the help of specific scaling procedures for the computed wavenumbers, the experimentally observed FTIR and FT-Raman bands were analyzed and assigned to different normal modes of vibrations of the molecule. Simulations in the dimer form were carried out to improve the assignment of the bands in the solid state experimental spectra. The error obtained was in general very low. Using PED's were determined the contributions of the different modes to each wavenumber. Several general conclusions were also deduced.

  15. Thermodynamic characteristics of cyclohexanone distribution between extractants and water

    SciTech Connect

    Vozin, V.G.; Diyarov, I.N.; Gainullin, I.F.

    1986-01-10

    The authors have determined the thermodynamic characteristics of cyclohexanone distribution between extractants and water, making it possible to estimate the effectiveness of its separation by the extraction method. The extractants studied were hexane, heptane, octane, benzene, toluene, ethylbenzene, ethyl acetate, and butyl acetate. Analysis of the results shows that the partition ratio increases with increase of the equilibrium concentrations of cyclohexanone in the coexisting phases, indicating association of the molecules of the distributed substance in the extractant phase. The foregoing leads to the conclusion that aromatic hydrocarbons and acetate esters are superior to paraffins in extractive properties.

  16. Polarized and depolarized Raman spectra of liquid carbon disulfide in the pressure range 0-10 kbar. I. Vibration frequencies, C-S bond length, and Fermi resonance

    NASA Astrophysics Data System (ADS)

    Ikawa, S.; Whalley, Edward

    1986-09-01

    The effect of pressure on the polarized and depolarized Raman spectra of liquid carbon disulphide, i.e., the peak frequencies, bandwidths, and relative intensities of both the allowed ν1 and 2ν2 bands and the interaction-induced ν2 and ν3 bands, have been measured at 22 °C up to 10 kbar. This paper discusses the effect of pressure on the frequencies and on the relative isotropic intensity of the ν1 and 2ν2 bands. The frequency of the ν1 band increases linearly with pressure, within the experimental uncertainty, at the rate 0.16±0.01 cm-1 kbar-1, and the frequencies of the ν2, ν3, and 2ν2 bands decrease nonlinearly. The frequency shifts are described by second-order perturbation theory with the molecular anharmonicity and the intermolecular interaction as perturbations. The leading terms of the shifts consist of the same derivative of the interaction potential, multiplied by different anharmonicity constants, and the shifts of the ν1 and 2ν2 bands suggests that the C-S bond length decreases at the rate 2×10-4 Å kbar-1. The relative isotropic intensity of the 2ν2 and ν1 bands increases with pressure at the rate 0.050 kbar-1, whereas the anisotropic 2ν2 intensity relative to the isotropic ν1 intensity is independent of pressure to the experimental precision of ˜0.005. The effect of pressure on the second derivative of the isotropic and anisotropic parts of the polarizability with respect to the bend coordinate was estimated as 1.1×10-43 C m2 V-1 kbar-1 and ˜0, respectively, from these values.

  17. Raman and surface enhanced Raman spectroscopic investigation on Lamiaceae plants

    NASA Astrophysics Data System (ADS)

    Rösch, P.; Popp, J.; Kiefer, W.

    1999-05-01

    The essential oils of Thymus vulgaris and Origanum vulgaris are studied by means of micro-Raman spectroscopy. The containing monoterpenes can be identified by their Raman spectra. Further the essential oils are investigated in their natural environment, the so-called oil cells of these Lamiaceae plants, with surface enhanced Raman spectroscopy (SERS). This method has the advantage to enhance Raman signals and furthermore the SERS effect leads to fluorescence quenching.

  18. The Raman signature of H2 in the uv spectra of Uranus and Neptune: Constraints on the haze optical properties and on the para-H2 fraction

    NASA Astrophysics Data System (ADS)

    Courtin, Régis

    1999-08-01

    dynamical state of the troposphere. Longwards of 3000 Å, the inferred absorptivities are consistent with laboratory measurements on tholins produced from CH 4-H 2 gas mixtures ( Khare et al., 1987). The para-H 2 mole fraction on both planets is constrained from the strength of a prominent H 2 Raman feature at 2853 Å. On Uranus, at latitudes between 45 and 75°S and in the 50-500 mbar pressure range, the best agreement is obtained with an equilibrium para-H 2 distribution. On Neptune, there is an indication of a slight departure from equilibrium in the same pressure range at mid-southern latitudes. Although this new method is significantly less accurate, its results are consistent with those of previous investigations based on the analysis of H 2 quadrupole lines ( Baines et al., 1995) and of the Voyager IRIS spectra ( Conrath et al., 1998).

  19. Remote Raman System for Planetary Landers: Data Reduction and Analysis

    NASA Technical Reports Server (NTRS)

    Horton, K. A.; Domergue-Schmidt, N.; Sharma, S. K.; Deb, P.; Lucey, P. G.

    2000-01-01

    Raman spectroscopy is typically envisioned as an in situ analysis technique. Raman spectra measured remotely (10s of meters) from a planetary lander can be calibrated to spectral radiance and the Raman scattering efficiency can be determined.

  20. Monitoring of occupational exposure to cyclohexanone by diffusive sampling and urinalysis.

    PubMed

    Toshio Kawai Yoko Nakahara Shun'inchi Horiguchi Zuo-Wen Zhang Kae Higashikawa Masayuki Ikeda

    1999-01-01

    The present study was initiated in order to identify the best marker of occupational exposure to cyclohexanone among cyclohexanone and its metabolites in urine. To examine if diffusive samplers are applicable to personal monitoring of exposure to cyclohexanone in workroom air, the performance of carbon cloth to adsorb cyclohexanone in air was studied by experimental exposure of the cloth to cyclohexanone at 5, 10, 25 or 50 ppm (i.e. 20, 40, 100 or 200 mg m-3) for up to 8 h. Cyclohexanone in the exposed cloth was extracted with carbon disulphide followed by gas chromatographic (GC) analysis. The cloth adsorbed cyclohexanone in proportion to the concentration (up to 50 ppm) and the duration (up to 8 h), and responded quantitatively to a 15 min exposure at 100 ppm. In a field survey, end-of-shift urine samples were collected from 24 factory workers occupationally exposed to cyclohexanone (up to 9 ppm) in combination with toluene and other solvents. Urine samples were also collected from 10 subjects with no occupational exposure to solvents. The urine samples were treated with acid or an enzyme preparation for hydrolysis, and extracted with dichloromethane or ethyl acetate. The extracts were analysed by GC for cyclohexanone, cyclohexanol, and trans- and cis-isomers of 1,2- and 1,4-cyclohexanediol. Both cyclohexanol and trans-1,2-cyclohexanediol in urine correlated significantly with time-weighted average intensity of exposure to cyclohexanone. Although trans -1,4-isomer was also excreted, its quantitative relation with cyclohexanone exposure could not be established, because the solvent extraction rate was low and unstable. Excretion of cis-isomers was not confirmed. The two analytes, cyclohexanol and trans-1,2-cyclohexanediol, appeared to be equally valid as exposure markers, but the latter may be superior to the former in the sense that it is sensitive enough to separate the exposed from the non-exposed at 1 ppm or less cyclohexanone exposure.

  1. Electronic structures of organometallic complexes of f elements LXXXIII: First comparison of experimental and calculated (on the basis of density functional theory) polarized Raman spectra of an oriented organometallic single crystal: Tris(pentamethylcyclopentadienyl)lanthanum

    NASA Astrophysics Data System (ADS)

    Amberger, Hanns-Dieter; Reddmann, Hauke; Mueller, Thomas J.; Evans, William J.

    2014-10-01

    The polarized Raman spectra of an oriented La(η5-C5Me5)3 (1) single crystal (where the principal axes of the two molecules per unit cell are uniformly oriented) as well as the mid (ca. 90 K) and far infrared spectra of pellets have been recorded. Applying the selection rules of C3h symmetry to the spectra obtained, the irreducible representations (irreps) of numerous lines/bands of intra-ligand character were derived. In the range <400 cm-1, where 28 Raman-allowed lines and 20 FIR-allowed bands of both skeletal and intra-ligand character are expected, only few assignments based on symmetry considerations were possible. In order to increase the number of identifications, model calculations on the basis of density functional theory (DFT) were performed. In the intra-ligand range >400 cm-1, the obtained results agree well with the experimental findings. Because of the strong mixing at lower wavenumbers, even the separation of calculated skeletal and intra-ligand modes and the identification of the former was only successful by comparing the calculated FIR and averaged Raman spectra of compound 1 with those of La(η5-C5Me4H)3 (2). Making use of both the calculated frequencies of normal modes and their polarizability tensors, the polarized Raman spectra of an oriented single crystal of 1 in the range <400 cm-1 were calculated and compared to the experimental ones. Because of an overestimation of the mixing of normal vibrations of A"; symmetry, the experimental intensities of the lines of the symmetric stretch ν1(A";) were not reproduced by the calculation for compound 1 but by that for Sm(η5-C5Me5)3 (3). Skeletal and intra-ligand modes were separated and designated. Neglecting νC-H modes, the DFT calculation for 1 achieved an r.m.s. deviation of 17.9 cm-1 for 72 assignments.

  2. Atmospheric chemistry of cyclohexanone: UV spectrum and kinetics of reaction with chlorine atoms

    SciTech Connect

    Wallington, T.J.; Iwasaki, E.; Matsumi, Y.; Kaiser, E. W.; Calvert, Jack G

    2008-05-01

    Absolute and relative rate techniques were used to study the reactivity of Cl atoms with cyclohexanone in 6 Torr of argon or 800 950 Torr of N2 at 295 2 K. The absolute rate experiments gave k(Cl + cyclohexanone) = (1.88 0.38) 10 10, whereas the relative rate experiments gave k(Cl + cyclohexanone) = (1.66 0.26) 10 10 cm3 molecule 1 s 1. Cyclohexanone has a broad UV absorption band with a maximum cross section of (4.0 0.3) 10 20 cm2 molecule 1 near 285 nm. The results are discussed with respect to the literature data.

  3. Molecular structure, vibrational spectroscopic (FT-IR, FT-Raman), UV-vis spectra, first order hyperpolarizability, NBO analysis, HOMO and LUMO analysis, thermodynamic properties of benzophenone 2,4-dicarboxylic acid by ab initio HF and density functional method

    NASA Astrophysics Data System (ADS)

    Chaitanya, K.

    2012-02-01

    The FT-IR (4000-450 cm -1) and FT-Raman spectra (3500-100 cm -1) of benzophenone 2,4-dicarboxylic acid (2,4-BDA) have been recorded in the condensed state. Density functional theory calculation with B3LYP/6-31G(d,p) basis set have been used to determine ground state molecular geometries (bond lengths and bond angles), harmonic vibrational frequencies, infrared intensities, Raman activities and bonding features of the title compounds. The assignments of the vibrational spectra have been carried out with the help of normal co-ordinate analysis (NCA) following the scaled quantum mechanical force field (SQMFF) methodology. The first order hyperpolarizability ( β0) and related properties ( β, α0 and Δ α) of 2,4-BDA is calculated using HF/6-31G(d,p) method on the finite-field approach. The stability of molecule has been analyzed by using NBO analysis. The calculated first hyperpolarizability shows that the molecule is an attractive molecule for future applications in non-linear optics. The calculated HOMO and LUMO energies show that charge transfer occurs within these molecules. Mulliken population analysis on atomic charges is also calculated. Because of vibrational analyses, the thermodynamic properties of the title compound at different temperatures have been calculated. Finally, the UV-vis spectra and electronic absorption properties were explained and illustrated from the frontier molecular orbitals.

  4. Blood analysis by Raman spectroscopy.

    PubMed

    Enejder, Annika M K; Koo, Tae-Woong; Oh, Jeankun; Hunter, Martin; Sasic, Slobodan; Feld, Michael S; Horowitz, Gary L

    2002-11-15

    Concentrations of multiple analytes were simultaneously measured in whole blood with clinical accuracy, without sample processing, using near-infrared Raman spectroscopy. Spectra were acquired with an instrument employing nonimaging optics, designed using Monte Carlo simulations of the influence of light-scattering-absorbing blood cells on the excitation and emission of Raman light in turbid medium. Raman spectra were collected from whole blood drawn from 31 individuals. Quantitative predictions of glucose, urea, total protein, albumin, triglycerides, hematocrit, and hemoglobin were made by means of partial least-squares (PLS) analysis with clinically relevant precision (r(2) values >0.93). The similarity of the features of the PLS calibration spectra to those of the respective analyte spectra illustrates that the predictions are based on molecular information carried by the Raman light. This demonstrates the feasibility of using Raman spectroscopy for quantitative measurements of biomolecular contents in highly light-scattering and absorbing media. PMID:18033426

  5. Synthesis, spectral, thermal, optical and theoretical studies of (2E,6E)-2-benzylidene-6-(4-methoxybenzylidene)cyclohexanone.

    PubMed

    Meenatchi, V; Muthu, K; Rajasekar, M; Meenakshisundaram, Sp

    2014-01-01

    Single crystals of (2E,6E)-2-benzylidine-6-(4-methoxybenzylidine)cyclohexanone are grown by slow evaporation of ethanolic solution at room temperature. The characteristic functional groups present in the molecule are confirmed by Fourier transform infrared and Fourier transform Raman analyses. The scanning electron microscopy study reveals the surface morphology of the material. Thermogravimetric/differential thermal analysis study reveals the purity of the material and the crystal is transparent in the visible region having a lower optical cut-off at ∼487nm. The second harmonic generation efficiency of as-grown material is estimated by Kurtz and Perry technique. Optimized geometry has been derived using Hartree-Fock calculations performed at the level 6-31G (d,p) and the first-order molecular hyperpolarizability (β) is estimated. The specimen is further characterized by nuclear magnetic resonance spectroscopy.

  6. Computational Kinetic Study for the Unimolecular Decomposition Pathways of Cyclohexanone.

    PubMed

    Zaras, Aristotelis M; Dagaut, Philippe; Serinyel, Zeynep

    2015-07-16

    There has been evidence lately that several endophytic fungi can convert lignocellulosic biomass into ketones among other oxygenated compounds. Such compounds could prove useful as biofuels for internal combustion engines. Therefore, their combustion properties are of high interest. Cyclohexanone was identified as an interesting second-generation biofuel ( Boot , M. ; et al. Cyclic Oxygenates: A New Class of Second-Generation Biofuels for Diesel Engines? Energy Fuels 2009 , 23 , 1808 - 1817 ; Klein-Douwel , R. J. H. ; et al. Soot and Chemiluminescence in Diesel Combustion of Bio-Derived, Oxygenated and Reference Fuels . Proc. Combust. Inst. 2009 , 32 , 2817 - 2825 ). However, until recently ( Serinyel , Z. ; et al. Kinetics of Oxidation of Cyclohexanone in a Jet- Stirred Reactor: Experimental and Modeling . Proc. Combust. Inst. 2014 ; DOI: 10.1016/j.proci.2014.06.150 ), no previous studies on the kinetics of oxidation of that fuel could be found in the literature. In this work, we present the first theoretical kinetic study of the unimolecular decomposition pathways of cyclohexanone, a cyclic ketone that could demonstrate important fuel potential. Using the quantum composite G3B3 method, we identified six different decomposition pathways for cyclohexanone and computed the corresponding rate constants. The rate constants were calculated using the G3B3 method coupled with Rice-Ramsperger-Kassel-Marcus theory in the temperature range of 800-2000 K. Our calculations show that the kinetically more favorable channel for thermal decomposition is pathway 2 that produces 1,3-butadien-2-ol, which in turn can isomerize easily to methyl vinyl ketone through a small barrier. The results presented here can be used in a future kinetic combustion mechanism.

  7. Computational Kinetic Study for the Unimolecular Decomposition Pathways of Cyclohexanone.

    PubMed

    Zaras, Aristotelis M; Dagaut, Philippe; Serinyel, Zeynep

    2015-07-16

    There has been evidence lately that several endophytic fungi can convert lignocellulosic biomass into ketones among other oxygenated compounds. Such compounds could prove useful as biofuels for internal combustion engines. Therefore, their combustion properties are of high interest. Cyclohexanone was identified as an interesting second-generation biofuel ( Boot , M. ; et al. Cyclic Oxygenates: A New Class of Second-Generation Biofuels for Diesel Engines? Energy Fuels 2009 , 23 , 1808 - 1817 ; Klein-Douwel , R. J. H. ; et al. Soot and Chemiluminescence in Diesel Combustion of Bio-Derived, Oxygenated and Reference Fuels . Proc. Combust. Inst. 2009 , 32 , 2817 - 2825 ). However, until recently ( Serinyel , Z. ; et al. Kinetics of Oxidation of Cyclohexanone in a Jet- Stirred Reactor: Experimental and Modeling . Proc. Combust. Inst. 2014 ; DOI: 10.1016/j.proci.2014.06.150 ), no previous studies on the kinetics of oxidation of that fuel could be found in the literature. In this work, we present the first theoretical kinetic study of the unimolecular decomposition pathways of cyclohexanone, a cyclic ketone that could demonstrate important fuel potential. Using the quantum composite G3B3 method, we identified six different decomposition pathways for cyclohexanone and computed the corresponding rate constants. The rate constants were calculated using the G3B3 method coupled with Rice-Ramsperger-Kassel-Marcus theory in the temperature range of 800-2000 K. Our calculations show that the kinetically more favorable channel for thermal decomposition is pathway 2 that produces 1,3-butadien-2-ol, which in turn can isomerize easily to methyl vinyl ketone through a small barrier. The results presented here can be used in a future kinetic combustion mechanism. PMID:25354027

  8. [Research on Raman spectra of glycerinat at the pressure of 0-1.0 GPa and the temperature of 29 degrees C].

    PubMed

    Liu, Jun-jie; Zheng, Hai-fei

    2005-11-01

    The present paper investigates Raman spectral characters of liquid glycerin by the experiment at the pressure of 0-1.0 GPa and the temperature of 29 degrees C, and defines the relation between the pressure and the Raman peak of glycerin at ambient temperature. The result shows that there are two characteristic Raman peaks of glycerin defined as v(CH) and v(CH2), and both of them move to higher positions as system pressure increases. The relation between the system pressure and peak positions of glycerin is given as the following: v(CH) = 0.0092P + 2886.67 and v(CH2) = 0.009 4P + 2948.53. On the other hand, glycerin is reliable as a liquid pressure gauge for high pressure experiment. The equation applied to demarcate system pressure is also showed: P = 106.4 v(CH2) - 3.14 x 10(5).

  9. Vibrational spectra (FT-IR and FT-Raman), molecular structure, natural bond orbital, and TD-DFT analysis of L-Asparagine Monohydrate by Density Functional Theory approach.

    PubMed

    Sylvestre, S; Sebastian, S; Edwin, S; Amalanathan, M; Ayyapan, S; Jayavarthanan, T; Oudayakumar, K; Solomon, S

    2014-12-10

    In this work we report the vibrational spectral analysis of l-Asparagine Monohydrate (LAM) molecule by using FT-IR and FT-Raman spectroscopic techniques. The equilibrium geometry, harmonic vibrational wavenumbers, various bonding features have been computed using density functional B3LYP method with 6-311G(d,p) as basis set. Stability of the molecule arising from hyperconjugative interactions, charge delocalization have been analyzed using natural bond orbital (NBO) analysis. The results show that charge in electron density (ED) in σ(*) and π(*) antibonding orbitals and second order delocalization energies E((2)) confirms the occurrence of Intramolecular Charge Transfer (ICT) within the molecule. The energy and oscillator strength calculated by Time-Dependent Density Functional Theory (TD-DFT) complements with the experimental findings. The simulated spectra satisfactorily coincide with the experimental spectra.

  10. Short-term monitoring of a gas seep field in the Katakolo bay (Western Greece) using Raman spectra DTS and DAS fibre-optic methods

    NASA Astrophysics Data System (ADS)

    Chalari, A.; Mondanos, M.; Finfer, D.; Christodoulou, D.; Kordella, S.; Papatheodorou, G.; Geraga, M.; Ferentinos, G.

    2012-12-01

    A wide submarine seep of thermogenic gas in the Katakolo bay, Western Greece, was monitored passively using the intelligent Distributed Acoustic Sensor (iDAS) and Ultima Raman spectra Distributed Temperature Sensor (DTS), in order to study the thermal and noise signal of the bubble plumes released from the seafloor. Katakolo is one one of the most prolific thermogenic gas seepage zones in Europe and the biggest methane seep ever reported in Greece. Very detailed repetitive offshore gas surveys, including marine remote sensing (sub-bottom profiling, side scan sonar), underwater exploration by a towed instrumented system (MEDUSA), long-term monitoring benthic station (GMM), compositional and isotopic analyses, and flux measurements of gas, showed that: (a) gas seepage takes place over an extended area in the Katakolo harbour and along two main normal faults off the harbour; (b) at least 823 gas bubble ( 10-20 cm in diameter) plumes escaping over an area of 94,200 m2, at depths ranging from 5.5 to 16 m; (c) the gas consists mainly of methane and has H2S levels of hundreds to thousands ppmv, and shows significant amounts of other light hydrocarbons like ethane, propane, iso-butane and C6 alkanes, (d) offshore and onshore seeps release the same type of thermogenic gas; (e) due to the shallow depth, more than 90 % of CH4 released at the seabed enters the atmosphere, and (f) the gas seeps may produce severe geohazards for people, buildings and construction facilities due to the explosive and toxicological properties of methane and hydrogen sulfide, respectively. For the short-term monitoring, the deployment took place on a site located inside the harbour of Katakolo within a thermogenic gas seepage area where active faults are intersected. The iDAS system makes it possible to observe the acoustical signal along the entire length of an unmodified optical cable without introducing any form of point sensors such as Bragg gratings. When the bubble plumes are released by the

  11. Vibrational (FT-IR and FT-Raman), electronic (UV-Vis), NMR (1H and 13C) spectra and reactivity analyses of 4,5-dimethyl-o-phenylenediamine.

    PubMed

    Atac, Ahmet; Karaca, Caglar; Gunnaz, Salih; Karabacak, Mehmet

    2014-09-15

    The structure of 4,5-dimethyl-o-phenylenediamine (C8H12N2, DMPDA) was investigated on the basis of spectroscopic data and theoretical calculations. The sterochemical structure was determined by FT-IR, FT-Raman, UV, 1H and 13C NMR spectra. An experimental study and a theoretical analysis were associated by using the B3LYP method with Gaussian09 package program. FT-IR and FT-Raman spectra were recorded in the region of 4000-400 cm(-1) and 4000-10 cm(-1), respectively. The vibrational spectra were calculated by DFT method and the fundamental vibrations were assigned on the basis of the total energy distribution (TED), calculated with scaled quantum mechanics (SQM) method with Parallel Quantum Solutions (PQS) program. The UV absorption spectrum of the compound that dissolved in ethanol solution were recorded in the range of 190-400 nm. Total density of state (TDOS) and partial density of state (PDOS) of the DMPDA in terms of HOMOs and LUMOs were calculated and analyzed. Chemical shifts were reported in ppm relative to tetramethylsilane (TMS) for 1H and 13C NMR spectra. The compound was dissolved in dimethyl sulfoxide (DMSO). Also, 1H and 13C chemical shifts calculated using the gauge independent atomic orbital (GIAO) method. Mullikan atomic charges and other thermo-dynamical parameters were investigated with the help of B3LYP (DFT) method using 6-311++G** basis set. On the basis of the thermodynamic properties of the title compound at different temperatures have been carried out, revealing the correlations between heat capacity (C), entropy (S), enthalpy changes (H) and temperatures. The optimized bond lengths, bond angles, chemical shifts and vibrational wavenumbers showed the best agreement with the experimental results.

  12. Vibrational (FT-IR and FT-Raman), electronic (UV-Vis), NMR (1H and 13C) spectra and reactivity analyses of 4,5-dimethyl-o-phenylenediamine.

    PubMed

    Atac, Ahmet; Karaca, Caglar; Gunnaz, Salih; Karabacak, Mehmet

    2014-09-15

    The structure of 4,5-dimethyl-o-phenylenediamine (C8H12N2, DMPDA) was investigated on the basis of spectroscopic data and theoretical calculations. The sterochemical structure was determined by FT-IR, FT-Raman, UV, 1H and 13C NMR spectra. An experimental study and a theoretical analysis were associated by using the B3LYP method with Gaussian09 package program. FT-IR and FT-Raman spectra were recorded in the region of 4000-400 cm(-1) and 4000-10 cm(-1), respectively. The vibrational spectra were calculated by DFT method and the fundamental vibrations were assigned on the basis of the total energy distribution (TED), calculated with scaled quantum mechanics (SQM) method with Parallel Quantum Solutions (PQS) program. The UV absorption spectrum of the compound that dissolved in ethanol solution were recorded in the range of 190-400 nm. Total density of state (TDOS) and partial density of state (PDOS) of the DMPDA in terms of HOMOs and LUMOs were calculated and analyzed. Chemical shifts were reported in ppm relative to tetramethylsilane (TMS) for 1H and 13C NMR spectra. The compound was dissolved in dimethyl sulfoxide (DMSO). Also, 1H and 13C chemical shifts calculated using the gauge independent atomic orbital (GIAO) method. Mullikan atomic charges and other thermo-dynamical parameters were investigated with the help of B3LYP (DFT) method using 6-311++G** basis set. On the basis of the thermodynamic properties of the title compound at different temperatures have been carried out, revealing the correlations between heat capacity (C), entropy (S), enthalpy changes (H) and temperatures. The optimized bond lengths, bond angles, chemical shifts and vibrational wavenumbers showed the best agreement with the experimental results. PMID:24813280

  13. Vibrational (FT-IR and FT-Raman), electronic (UV-Vis), NMR (1H and 13C) spectra and reactivity analyses of 4,5-dimethyl-o-phenylenediamine

    NASA Astrophysics Data System (ADS)

    Atac, Ahmet; Karaca, Caglar; Gunnaz, Salih; Karabacak, Mehmet

    2014-09-01

    The structure of 4,5-dimethyl-o-phenylenediamine (C8H12N2, DMPDA) was investigated on the basis of spectroscopic data and theoretical calculations. The sterochemical structure was determined by FT-IR, FT-Raman, UV, 1H and 13C NMR spectra. An experimental study and a theoretical analysis were associated by using the B3LYP method with Gaussian09 package program. FT-IR and FT-Raman spectra were recorded in the region of 4000-400 cm-1 and 4000-10 cm-1, respectively. The vibrational spectra were calculated by DFT method and the fundamental vibrations were assigned on the basis of the total energy distribution (TED), calculated with scaled quantum mechanics (SQM) method with Parallel Quantum Solutions (PQS) program. The UV absorption spectrum of the compound that dissolved in ethanol solution were recorded in the range of 190-400 nm. Total density of state (TDOS) and partial density of state (PDOS) of the DMPDA in terms of HOMOs and LUMOs were calculated and analyzed. Chemical shifts were reported in ppm relative to tetramethylsilane (TMS) for 1H and 13C NMR spectra. The compound was dissolved in dimethyl sulfoxide (DMSO). Also, 1H and 13C chemical shifts calculated using the gauge independent atomic orbital (GIAO) method. Mullikan atomic charges and other thermo-dynamical parameters were investigated with the help of B3LYP (DFT) method using 6-311++G** basis set. On the basis of the thermodynamic properties of the title compound at different temperatures have been carried out, revealing the correlations between heat capacity (C), entropy (S), enthalpy changes (H) and temperatures. The optimized bond lengths, bond angles, chemical shifts and vibrational wavenumbers showed the best agreement with the experimental results.

  14. Raman Spectra of Single-Walled Carbon Nanotubes Synthesized by Aerosol CVD-Method Using Ferrocene and CuNi Nanoparticles

    NASA Astrophysics Data System (ADS)

    Lomakin, M. V.; Rybakov, M. S.; Kosobutsky, A. V.; Sevostyanov, O. G.; Shandakov, S. D.

    2015-09-01

    Properties of single-walled carbon nanotubes (SWCNTs) obtained by aerosol method of chemical deposition from the gas phase using ethanol, ferrocene, and CuNi nanoparticles are studied. The structural and vibrational characteristics of synthesis products are determined by Raman spectroscopy. The influence of the catalyst nanoparticles introduced into the reaction mixture on the properties of the synthesized SWCNTs is discussed.

  15. Palladium-catalyzed aerobic dehydrogenative aromatization of cyclohexanone imines to arylamines.

    PubMed

    Hajra, Alakananda; Wei, Ye; Yoshikai, Naohiko

    2012-11-01

    Dehydrogenative aromatization of cyclohexanone imines to arylamines has been achieved using a palladium catalyst under aerobic conditions. The reaction is applicable to a variety of imines that are either preformed or generated in situ from cyclohexanone derivatives and aryl or alkylamines.

  16. Raman scattering in crystals

    SciTech Connect

    Edwards, D.F.

    1988-09-30

    A tutorial presentation is given of Raman scattering in crystals. The physical concepts are emphasized rather than the detailed mathematical formalism. Starting with an introduction to the concepts of phonons and conservation laws, the effects of photon-phonon interactions are presented. This interaction concept is shown for a simple cubic crystal and is extended to a uniaxial crystal. The correlation table method is used for determining the number and symmetry of the Raman active modes. Finally, examples are given to illustrate the relative ease of using this group theoretical method and the predictions are compared with measured Raman spectra. 37 refs., 17 figs., 6 tabs.

  17. Temperature-dependent Raman spectra and electrical properties of 0.69Pb(Mg1/3Nb2/3)O3-0.31PbTiO3 single crystals

    NASA Astrophysics Data System (ADS)

    Fang, Bijun; Liu, Xing; Li, Xiaobing; Ding, Jianning; Zhao, Xiangyong; Luo, Haosu

    2016-09-01

    The temperature-dependent Raman spectra and electrical properties of the 0.69Pb(Mg1/3Nb2/3)O3-0.31PbTiO3 (0.69PMN-0.31PT) single crystals were investigated. Based on the group theory, the poled 0.69PMN-0.31PT single crystals belong to the monoclinic crystal system, which was confirmed by the room-temperature Raman spectra. The 0.69PMN-0.31PT single crystals experience successive structural phase transitions, i.e., a monoclinic-tetragonal (FEM-FET) phase transition at TM-T and a tetragonal-cubic (FET-PC) phase transition at T m determined by the dielectric measurement. Due to the enhancement of long-range order, their FEM-FET phase transition becomes more obvious after the poling process. The wavenumbers and line widths of the 271, 502, 575, 795 cm-1 Raman modes, and the intensity ratios of I_{{271{{cm}}^{ - 1} }} /I_{{795{{cm}}^{ - 1} }} and I_{{502{{cm}}^{ - 1} }} /I_{{575{{cm}}^{ - 1} }} exhibit obvious anomalies around T M-T and T m, which are closely related to the FEM-FET and FET-PC phase transitions. The temperature and electric field (E)-induced phase transitions are observed in the unipolar strain-E (S-E) curves. The converse piezoelectric constant ( d 33), maximum strain value ( S max%) and longitudinal electrostrictive coefficient ( Q) increase considerably around the ferroelectric phase transition temperature T M-T.

  18. Disposition of acetone, methyl ethyl ketone and cyclohexanone in acute poisoning.

    PubMed

    Sakata, M; Kikuchi, J; Haga, M; Ishiyama, N; Maeda, T; Ise, T; Hikita, N

    1989-01-01

    A case of coma due to the drinking of a liquid cement for polyvinyl chloride resin, containing acetone, methyl ethyl ketone, cyclohexanone and polyvinyl chloride is described. The patient also simultaneously ingested the alcoholic beverage, sake. After gastric lavage, plasma exchanges and direct hemoperfusions, the patient recovered. The concentrations of these chemicals in plasma and urine were analyzed at various time intervals to estimate the clearance. The elimination half lives for acetone and methyl ethyl ketone were 18 hours and 10 hours, respectively. Although cyclohexanone made up the largest component in the solvents, the blood level was extremely low and a large amount of cyclohexanol, a metabolite of cyclohexanone was detected in the blood and urine. The glucuronide metabolite of cyclohexanol was also estimated after the hydrolysis with beta-glucuronidase. Since the conversion of cyclohexanone to cyclohexanol is known to be catalyzed by alcohol dehydrogenase, possible interactions between sake ingestion and cyclohexanone metabolism is proposed.

  19. Notizen: Raman-Spektroskopische Untersuchungen der Systeme ASCl3/Cl2-AlCl3 und AsCl3 /Cl2-GaCl3/ Raman Spectra of the Systems AsCl3/Cl2—AlCl3 and AsCl3/Cl2-GaCl3

    NASA Astrophysics Data System (ADS)

    Demircan, B.; Brockner, W.

    1983-07-01

    In the systems investigated only the compounds AsAlCl8 and AsGaCl8 g are found. Raman spectra were recorded for the solid and molten compounds and for mixtures with excess ASCl3 + CL2 and AlCl3 and GaCl3 , respectively. The observed frequencies are assigned to tetrahedral AsCl4+, AlCl4- and GaCl4- units. Melting of AsCl4AlCl 4 and AsCl4GaCl4 causes a decomposition into AsCl3 , Cl2 and AlCl3 and GaCl3 , respectively.

  20. Lactone-bound structures of cyclohexanone monooxygenase provide insight into the stereochemistry of catalysis.

    PubMed

    Yachnin, Brahm J; McEvoy, Michelle B; MacCuish, Roderick J D; Morley, Krista L; Lau, Peter C K; Berghuis, Albert M

    2014-12-19

    The Baeyer-Villiger monooxygenases (BVMOs) are microbial enzymes that catalyze the synthetically useful Baeyer-Villiger oxidation reaction. The available BVMO crystal structures all lack a substrate or product bound in a position that would determine the substrate specificity and stereospecificity of the enzyme. Here, we report two crystal structures of cyclohexanone monooxygenase (CHMO) with its product, ε-caprolactone, bound: the CHMO(Tight) and CHMO(Loose) structures. The CHMO(Tight) structure represents the enzyme state in which substrate acceptance and stereospecificity is determined, providing a foundation for engineering BVMOs with altered substrate spectra and/or stereospecificity. The CHMO(Loose) structure is the first structure where the product is solvent accessible. This structure represents the enzyme state upon binding and release of the substrate and product. In addition, the role of the invariant Arg329 in chaperoning the substrate/product during the catalytic cycle is highlighted. Overall, these data provide a structural framework for the engineering of BVMOs with altered substrate spectra and/or stereospecificity.

  1. Raman spectra and dielectric studies in Ti substituted Bi2 (Zn2/3Nb4/3)O7 pyrochlores

    NASA Astrophysics Data System (ADS)

    Kumar, Aditya; Singh, Manoj K.; Singh, Gulab; Sudheendran, K.; Raju, K. C. James

    2016-05-01

    Bi2Zn2/3-x/3Nb4/3-2x/3TixO7 (m - BZNT) with x = 0 to 0.4 were synthesized in the conventional solid state route. The dielectric constants of these ceramics at microwave frequencies are found to be increasing from 70 to 114 when x increased from 0 to 0.4. Raman scattering studies were carried out to investigate the effect of Ti4+ substitution on the dielectric properties of Bi2 (Zn2/3Nb4/3)O7 (m-BZN) ceramics. The observed Raman peaks in the m-BZNT are slightly shifted towards lower frequency in comparison to that of m-BZN clearly indicated that the Ti4+ ions are indeed occupying substitution sites in the host m - BZN. The anomalous change in intensity and full with at half maxima (FWHM) of Raman modes at 749 and 847 cm-1 suggest change in oxygen octahedral closely related to dielectric properties of m-BZNT.

  2. Solid-state Raman spectra of non-centrosymmetric crystals - Theoretical vs. experimental study towards an application in THz-regime

    NASA Astrophysics Data System (ADS)

    Ivanova, Bojidarka B.

    2012-05-01

    Experimental and theoretical solid-state Raman spectroscopic study of five model derivatives of amino acids (AAs), crystallizing in the non-centrosymmetric space groups, with the number molecules per unit cell Z = 1-8 were studied. The self-assembly association effects within the frame of crystals with P21, Pca21, and P212121, space groups and their effect on the Raman frequencies, within 10-0.3 THz were discussed. The assignment of the spectroscopic properties and the hydrogen bond interactions, depending of the crystal packing of the model tyramine hemihydrate was performed. The paper aims to make a bridge between the methods for analysis of the optical phenomena within the THz-region, such as far-IR, Raman and THz-spectroscopy. The observed individual characteristic excitations of materials within THz-region, provided unique opportunity for chemical identification in solid-state. The specific advantages of each of the methods provided unique combination allowing both qualitative and quantitative analysis, especially of macro-components, and achievement of the analytical information at an extremely high degree of certainty towards the individual characteristics of each of the studied chemicals as properties of evidence, and would contributed in varying degrees to the evidence in the field of forensic chemical analysis.

  3. NBO, NMR, UV, FT-IR, FT-Raman spectra and molecular structure (monomeric and dimeric structures) investigation of 4-Chloro-3,5-Xylenol: a combined experimental and theoretical study.

    PubMed

    Arivazhagan, M; Gayathri, R

    2013-12-01

    In this work, a joint experimental (FTIR and FT-Raman) and theoretical (DFT and ab initio) study on the structure and the vibrations of 4-Chloro-3,5-Xylenol (CXL) are compared and analyzed. CXL is a chlorinated phenolic antiseptic which is a bactericide against most gram-positive bacteria. The first hyperpolarizability (β0) of this novel molecular system and related non-linear properties of CXL are calculated using HF/6-311++G(d,p) method on the finite-field approach. The energy and oscillator strength calculated using absorption spectra (UV-Vis spectrum), this spectral analysis confirms the charge transfer of the molecule. The theoretical (13)C nuclear magnetic resonance (NMR) chemical shifts of the molecule were calculated by Gauge Including Atomic Orbital (GIAO) method, to analyze the molecular environment as well as the delocalization activities of electron clouds. The directly calculated ionization potential (IP), electron affinity (EA), electronegativity (χ), chemical hardness (η), first electron excitation energy (τ) and electrophilicity index (ω) as well as local reactivity (S) analyzed using HOMO and LUMO energies; the energy band gap are also determined. NBO analysis shows that charge in electron density(ED) in the σ(*) and π(*) antibonding orbitals and E((2)) energies confirms the occurrence of ICT (Intramolecular Charge Transfer) within the molecule. Inter molecular hydrogen bonds exist between -OH group, give the evidence for the formation of dimer entities in the title molecule. The influences of chlorine atom, hydroxyl group and methyl group on the geometry of benzene and its normal modes of vibrations (monomer and dimer of CXL) have also been discussed. Finally the calculated results were applied to simulate Infrared and Raman spectra of the title molecule which show good agreement with observed spectra.

  4. NBO, NMR, UV, FT-IR, FT-Raman spectra and molecular structure (monomeric and dimeric structures) investigation of 4-Chloro-3,5-Xylenol: A combined experimental and theoretical study

    NASA Astrophysics Data System (ADS)

    Arivazhagan, M.; Gayathri, R.

    2013-12-01

    In this work, a joint experimental (FTIR and FT-Raman) and theoretical (DFT and ab initio) study on the structure and the vibrations of 4-Chloro-3,5-Xylenol (CXL) are compared and analyzed. CXL is a chlorinated phenolic antiseptic which is a bactericide against most gram-positive bacteria. The first hyperpolarizability (β0) of this novel molecular system and related non-linear properties of CXL are calculated using HF/6-311++G(d,p) method on the finite-field approach. The energy and oscillator strength calculated using absorption spectra (UV-Vis spectrum), this spectral analysis confirms the charge transfer of the molecule. The theoretical 13C nuclear magnetic resonance (NMR) chemical shifts of the molecule were calculated by Gauge Including Atomic Orbital (GIAO) method, to analyze the molecular environment as well as the delocalization activities of electron clouds. The directly calculated ionization potential (IP), electron affinity (EA), electronegativity (χ), chemical hardness (η), first electron excitation energy (τ) and electrophilicity index (ω) as well as local reactivity (S) analyzed using HOMO and LUMO energies; the energy band gap are also determined. NBO analysis shows that charge in electron density(ED) in the σ* and π* antibonding orbitals and E(2) energies confirms the occurrence of ICT (Intramolecular Charge Transfer) within the molecule. Inter molecular hydrogen bonds exist between -OH group, give the evidence for the formation of dimer entities in the title molecule. The influences of chlorine atom, hydroxyl group and methyl group on the geometry of benzene and its normal modes of vibrations (monomer and dimer of CXL) have also been discussed. Finally the calculated results were applied to simulate Infrared and Raman spectra of the title molecule which show good agreement with observed spectra.

  5. Cyclohexanone derivatives with cytotoxicity from the fungus Penicillium commune.

    PubMed

    Liu, Fang-zhi; Ren, Jin-wei; Tang, Jin-shan; Liu, Xing-zhong; Che, Yong-sheng; Yao, Xin-sheng

    2013-06-01

    Four new cyclohexanone derivatives (2-5) and one known analog, (-)-Palitantin (1) were isolated from the EtOAc extract of Penicillium commune, a fungal strain of low-temperature habitats. The structures of 2-5 were determined on the basis of extensive spectroscopic analysis. Furthermore, the absolute configuration of 2 was assigned by electronic circular dichroism (ECD) calculations, whereas that 3-5 were deduced via the CD data. Cytotoxicities of 2-5 against five human carcinoma cell lines (Hela, A549, MCF7, HCT116, T24) were evaluated.

  6. Solubility of anthracene and anthraquinone in cyclohexanone + carbon dioxide

    SciTech Connect

    Chang, C.J. . Dept. of Chemical Engineering)

    1994-10-01

    In the processing of an anthracene oil fraction from coal tar, a mixture of anthracene and anthraquinone is required to be separated to obtain products of high purity. The solubilities of anthracene and anthraquinone were measured in cyclohexanone + carbon dioxide as a function of the temperature and pressure of carbon dioxide at 291, 300, and 313 K and from 1.8--12.4 MPa. Average equilibrium solubilities and recoveries of both solids increased with increasing normalized concentration and pressure. The average separation factor of anthracene to anthraquinone, due to the effect of the mixed solvent, was 2.88 [+-] 1.91.

  7. Differentiation of lipsticks by Raman spectroscopy.

    PubMed

    Salahioglu, Fatma; Went, Michael J

    2012-11-30

    Dispersive Raman spectra have been obtained using a Raman microscope and an excitation wavelength of 632.8 nm from 69 lipsticks of various colours and from a range of manufacturers without any pre-treatment of the samples. 10% of the samples were too fluorescent to give Raman spectra. 22% of the samples gave spectra which were unique to the brand and colour within the collected sample set. The remaining 68% of the samples gave spectra which could be classified into seven distinct groups. Discrimination of red lipsticks by this technique was the most difficult. The spectra of deposited lipstick samples remained unchanged over a period of a least a year.

  8. Monitoring of exposure to cyclohexanone through the analysis of breath and urine.

    PubMed

    Ong, C N; Chia, S E; Phoon, W H; Tan, K T; Kok, P W

    1991-12-01

    Occupational exposure to cyclohexanone was studied for 59 workers through the analysis of environmental air, alveolar air, and urinary cyclohexanol. Environmental cyclohexanone exposure was measured by personal sampling with a carbon-felt passive dosimeter. Cyclohexanone in alveolar air and cyclohexanol in urine were determined with gas chromatography with a flame ionization detector. The end-of-shift urinary cyclohexanol levels correlated well with the time-weighted average environmental cyclohexanone values (r = 0.66). Urinary cyclohexanol corrected for creatinine correlated best with cyclohexanone in air (r = 0.77); when corrected for specific gravity, it gave a similar correlation coefficient (r = 0.73). When the time-weighted average of the exposure was 25 ppm, the corresponding calculated concentration for urinary cyclohexanol was 54.5 mg/1, 23.3 mg/g of creatinine, or 43.5 mg/l at a specific gravity of 1.018. The relationship between cyclohexanone exposure and its concentration in exhaled breath was found to be poorer than that for cyclohexanone exposure and the urinary metabolite (r = 0.51).

  9. Effects of structure distortion on optical phonon properties of crystalline beta-BaTeMo{sub 2}O{sub 9}—A novel nonlinear optical material: Infrared and Raman spectra as well as first-principles calculations

    SciTech Connect

    Zhou, S. T.; Huang, Y.; Qiu, W. Y.; Li, Y. L.; He, S. M.; Zhang, B. E-mail: xschen@mail.sitp.ac.cn Chen, X. S. E-mail: xschen@mail.sitp.ac.cn Lu, W. E-mail: xschen@mail.sitp.ac.cn; Zhang, J. J.; Tao, X. T.

    2013-12-21

    The infrared dielectric property of monoclinic BaTeMo{sub 2}O{sub 9} single crystals is studied by polarized IR reflectance spectra from 20 to 1800 cm{sup −1}. Based on the modified Lorentz model, the frequencies, strengths, and dampings of TO modes as well as the orientations of the dipole momenta are determined, agreeing well with Raman spectra and results from First-principles calculation. The observed modes are visually assigned to the specific atoms' motions in the primitive cell based on the theory calculations. A large shift of the internal modes of the anion groups relative to free anion co-ordination polyhedra is observed, which can be used to indicate the distortions of co-ordination polyhedra related to the nonlinear optical properties. Further, the experimental results of the strengths of the oscillators support the elimination and splitting of degenerate modes in free regular polyhedrons. These results offer a way to evaluate the nonlinear optical properties by use of traditional IR reflectivity spectra.

  10. FT-IR, FT-Raman, UV, NMR spectra and molecular structure investigation of (E)-2-(3-chloropyrazin-2-yl)-1-(3-ethyl-2, 6-diphenyl piperidin-4-ylidene) hydrazine: A combined experimental and theoretical study

    NASA Astrophysics Data System (ADS)

    Therasa Alphonsa, A.; Loganathan, C.; Athavan Alias Anand, S.; Kabilan, S.

    2015-11-01

    This work presents the characterization of (E)-2-(3-chloropyrazin-2-yl)-1-(3-ethyl-2, 6-diphenyl piperidin-4-ylidene) hydrazine (HDE) by quantum chemical calculations and spectral techniques. The structure was investigated by FT-IR, FT-Raman, UV-vis and NMR techniques. The geometrical parameters and energies have been obtained from Density functional theory (DFT) B3LYP (6-31G (d, p)) basis set calculations. The geometry of the molecule was fully optimized, vibrational spectra were calculated and fundamental vibrations were assigned on the basis of total energy distribution (TED) of the vibrational modes, calculated with scaled quantum mechanics (SQM) method. 1H and 13C NMR chemical shifts of the molecule were calculated using Gauge-independent atomic orbital method (GIAO). The electronic properties such as excitation energies, wavelength, HOMO, LUMO energies performed by Time dependent density functional theory (TD-DFT) results complements with the experimental findings. NBO analysis has been performed for analyzing charge delocalization throughout the molecule. The calculation results were applied to simulate spectra of the title compound, which show excellent agreement with observed spectra. To provide information about the interactions between human cytochrome protein and the novel compound theoretically, docking studies were carried out using Schrödinger software.

  11. Cancer cells assemble and align gold nanorods conjugated to antibodies to produce highly enhanced, sharp, and polarized surface Raman spectra: a potential cancer diagnostic marker.

    PubMed

    Huang, Xiaohua; El-Sayed, Ivan H; Qian, Wei; El-Sayed, Mostafa A

    2007-06-01

    Human oral cancer cells are found to assemble and align gold nanorods conjugated to anti-epidermal growth factor receptor (anti-EGFR) antibodies. Immnoconjugated gold nanorods and nanospheres were shown previously to exhibit strong Rayleigh (Mie) scattering useful for imaging. In the present letter, molecules near the nanorods on the cancer cells are found to give a Raman spectrum that is greatly enhanced (due to the high surface plasmon field of the nanorod assembly in which their extended surface plasmon fields overlap), sharp (due to a homogeneous environment), and polarized (due to anisotropic alignments). These observed properties can be used as diagnostic signatures for cancer cells.

  12. Raman spectroscopy of transition metal dichalcogenides

    NASA Astrophysics Data System (ADS)

    Saito, R.; Tatsumi, Y.; Huang, S.; Ling, X.; Dresselhaus, M. S.

    2016-09-01

    Raman spectroscopy of transition metal dichalcogenides (TMDs) is reviewed based on our recent theoretical and experimental works. First, we discuss the semi-classical and quantum mechanical description for the polarization dependence of Raman spectra of TMDs in which the optical dipole transition matrix elements as a function of laser excitation energy are important for understanding the polarization dependence of the Raman intensity and Raman tensor. Overviewing the symmetry of TMDs, we discuss the dependence of the Raman spectra of TMDs on layer thickness, polarization, laser energy and the structural phase. Furthermore, we discuss the Raman spectra of twisted bilayer and heterostructures of TMDs. Finally, we give our perspectives on the Raman spectroscopy of TMDs.

  13. Combined linear response quantum mechanics and classical electrodynamics (QM/ED) method for the calculation of surface-enhanced Raman spectra.

    PubMed

    Mullin, Jonathan; Schatz, George C

    2012-03-01

    A multiscale method is presented that allows for evaluation of plasmon-enhanced optical properties of nanoparticle/molecule complexes with no additional cost compared to standard electrodynamics (ED) and linear response quantum mechanics (QM) calculations for the particle and molecule, respectively, but with polarization and orientation effects automatically described. The approach first calculates the total field of the nanoparticle by ED using the finite difference time domain (FDTD) method. The field intensity in the frequency domain as a function of distance from the nanoparticle is calculated via a Fourier transform. The molecular optical properties are then calculated with QM in the frequency domain in the presence of the total field of the nanoparticle. Back-coupling due to dipolar reradiation effects is included in the single-molecule plane wave approximation. The effects of polarization and partial orientation averaging are considered. The QM/ED method is evaluated for the well-characterized test case of surface-enhanced Raman scattering (SERS) of pyridine bound to silver, as well as for the resonant Raman chromophore rhodamine 6G. The electromagnetic contribution to the enhancement factor is 10(4) for pyridine and 10(2) for rhodamine 6G.

  14. Influence of piezoelectric strain on the Raman spectra of BiFeO3 films deposited on PMN-PT substrates

    NASA Astrophysics Data System (ADS)

    Himcinschi, Cameliu; Guo, Er-Jia; Talkenberger, Andreas; Dörr, Kathrin; Kortus, Jens

    2016-01-01

    BiFeO3 epitaxial thin films were deposited on piezoelectric 0.72Pb(Mg1/3Nb2/3)O3-0.28PbTiO3 (PMN-PT) substrates with a conductive buffer layer (La0.7Sr0.3MnO3 or SrRuO3) using pulsed laser deposition. The calibration of the strain values induced by the electric field applied on the piezoelectric PMN-PT substrates was realised using X-Ray diffraction measurements. The method of piezoelectrically induced strain allows one to directly obtain a quantitative correlation between the strain and the shift of the Raman-active phonons. This is a prerequisite for making Raman scattering a strong tool to probe the strain coupling in multiferroic nanostructures. Using the Poisson's number for BiFeO3, one can determine the volume change induced by strain, and therefore the Grüneisen parameters for specific phonon modes.

  15. Robust cyclohexanone selective chemiresistors based on single-walled carbon nanotubes.

    PubMed

    Frazier, Kelvin M; Swager, Timothy M

    2013-08-01

    Functionalized single-walled carbon nanotube (SWCNT)-based chemiresistors are reported for a highly robust and sensitive gas sensor to selectively detect cyclohexanone, a target analyte for explosive detection. The trifunctional selector has three important properties: it noncovalently functionalizes SWCNTs with cofacial π-π interactions, it binds to cyclohexanone via hydrogen bond (mechanistic studies were investigated), and it improves the overall robustness of SWCNT-based chemiresistors (e.g., humidity and heat). Our sensors produced reversible and reproducible responses in less than 30 s to 10 ppm of cyclohexanone and displayed an average theoretical limit of detection (LOD) of 5 ppm.

  16. Phonon mode and phase transition behaviors of (1-x)PbSc1/2Ta1/2O3-xPbHfO3 relaxor ferroelectric ceramics determined by temperature-dependent Raman spectra

    NASA Astrophysics Data System (ADS)

    Zhang, W. J.; Li, W. W.; Chen, X. G.; Hu, Z. G.; Liu, W.; Wang, G. S.; Dong, X. L.; Chu, J. H.

    2011-07-01

    The composition dependence of phase transition temperature in (1-x)PbSc1/2Ta1/2O3-xPbHfO3 (PSTH) ceramics (0≤x≤0.2) has been investigated by Raman spectra. From the typical phonon mode variations, the PSTH ceramics unambiguously undergoes three structural transformations with increasing the temperature from 82 to 673 K. It was found that the F2g phonon mode disappears above the Curie temperature. Moreover, the PSTH ceramics exhibited the paraelectric to ferroelectric phase transitions at 287, 293, 313, 320, and 330 K with the composition. The phenomena can be ascribed to the enhanced length of Pb-O-Ta bonds induced by the incorporation of Hf4+ ions.

  17. A robust and effective time-independent route to the calculation of Resonance Raman spectra of large molecules in condensed phases with the inclusion of Duschinsky, Herzberg-Teller, anharmonic, and environmental effects

    PubMed Central

    Egidi, Franco; Bloino, Julien; Cappelli, Chiara; Barone, Vincenzo

    2015-01-01

    We present an effective time-independent implementation to model vibrational resonance Raman (RR) spectra of medium-large molecular systems with the inclusion of Franck-Condon (FC) and Herzberg-Teller (HT) effects and a full account of the possible differences between the harmonic potential energy surfaces of the ground and resonant electronic states. Thanks to a number of algorithmic improvements and very effective parallelization, the full computations of fundamentals, overtones, and combination bands can be routinely performed for large systems possibly involving more than two electronic states. In order to improve the accuracy of the results, an effective inclusion of the leading anharmonic effects is also possible, together with environmental contributions under different solvation regimes. Reduced-dimensionality approaches can further enlarge the range of applications of this new tool. Applications to imidazole, pyrene, and chlorophyll a1 in solution are reported, as well as comparisons with available experimental data. PMID:26550003

  18. Size-Dependent Raman Shifts for nanocrystals

    PubMed Central

    Gao, Yukun; Zhao, Xinmei; Yin, Penggang; Gao, Faming

    2016-01-01

    Raman spectroscopy is a very sensitive tool for probing semiconductor nanocrystals. The underlying mechanism behind the size-dependent Raman shifts is still quite controversial. Here we offer a new theoretical method for the quantum confinement effects on the Raman spectra of semiconductor nanocrystals. We propose that the shift of Raman spectra in nanocrystals can result from two overlapping effects: the quantum effect shift and surface effect shift. The quantum effect shift is extracted from an extended Kubo formula, the surface effect shift is determined via the first principles calculations. Fairly good prediction of Raman shifts can be obtained without the use of any adjustable parameter. Closer analysis shows that the size-dependent Raman shifts in Si nanocrystals mainly result from the quantum effect shifts. For nanodiamond, the proportion of surface effect shift in Raman shift is up to about 40%. Such model can also provide a good baseline for using Raman spectroscopy as a tool to measure size. PMID:27102066

  19. Size-Dependent Raman Shifts for nanocrystals.

    PubMed

    Gao, Yukun; Zhao, Xinmei; Yin, Penggang; Gao, Faming

    2016-04-22

    Raman spectroscopy is a very sensitive tool for probing semiconductor nanocrystals. The underlying mechanism behind the size-dependent Raman shifts is still quite controversial. Here we offer a new theoretical method for the quantum confinement effects on the Raman spectra of semiconductor nanocrystals. We propose that the shift of Raman spectra in nanocrystals can result from two overlapping effects: the quantum effect shift and surface effect shift. The quantum effect shift is extracted from an extended Kubo formula, the surface effect shift is determined via the first principles calculations. Fairly good prediction of Raman shifts can be obtained without the use of any adjustable parameter. Closer analysis shows that the size-dependent Raman shifts in Si nanocrystals mainly result from the quantum effect shifts. For nanodiamond, the proportion of surface effect shift in Raman shift is up to about 40%. Such model can also provide a good baseline for using Raman spectroscopy as a tool to measure size.

  20. [Raman active vibrations of aluminosilicates].

    PubMed

    Pan, Feng; Yu, Xue-hui; Mo, Xuan-xue; You, Jing-lin; Wang, Chen; Chen, Hui; Jiang, Guo-chang

    2006-10-01

    Raman spectra of aluminosilicate minerals, namely kyanite, andalusite, and sillimanite and K2O-Al2O3-SiO2 glasses were recorded. Four alumino-silicon tetrahedral model clusters were calculated by self-consistent (SCF) molecular orbital ab-ini-tio calculation of the quantum chem (QC) method. The result shows a decrease tendency in Raman frequencies in the 800-1200 cm(-1) frequency region with increase in four-coordinated Al content, which is assigned to the Si--Onb symmetry stretching vibrations. The Raman spectra in the 700-800 cm(-1) frequency region is attributed to Al-Onb symmetry stretching vibrations. PMID:17205741

  1. [Raman active vibrations of aluminosilicates].

    PubMed

    Pan, Feng; Yu, Xue-hui; Mo, Xuan-xue; You, Jing-lin; Wang, Chen; Chen, Hui; Jiang, Guo-chang

    2006-10-01

    Raman spectra of aluminosilicate minerals, namely kyanite, andalusite, and sillimanite and K2O-Al2O3-SiO2 glasses were recorded. Four alumino-silicon tetrahedral model clusters were calculated by self-consistent (SCF) molecular orbital ab-ini-tio calculation of the quantum chem (QC) method. The result shows a decrease tendency in Raman frequencies in the 800-1200 cm(-1) frequency region with increase in four-coordinated Al content, which is assigned to the Si--Onb symmetry stretching vibrations. The Raman spectra in the 700-800 cm(-1) frequency region is attributed to Al-Onb symmetry stretching vibrations.

  2. Raman spectra of Cu{sub 2}B{sup II}C{sup IV}X{sub 4}{sup VI} magnetic quaternary semiconductor compounds with tetragonal stannite type structure

    SciTech Connect

    Rincón, C. Quintero, M.; Power, Ch.; Moreno, E.; Quintero, E.; Morocoima, M.; Henao, J. A.; Macías, M. A.

    2015-05-28

    A comparative study of the Raman spectra of Cu{sub 2}B{sup II}C{sup IV}S{sub 4}{sup VI} and Cu{sub 2}B{sup II}C{sup IV}Se{sub 4}{sup VI}(where B = Mn or Fe) magnetic quaternary semiconductor compounds with stannite-type structure (I4{sup ¯}2m) has been done. Most of the fourteen Raman lines expected for these materials were observed in the spectra. The two strongest lines observed have been assigned to the IR inactive A{sub 1}{sup 1} and A{sub 1}{sup 2} stannite modes that originated from the motion of the S or Se anion around the Cu and C{sup IV} cations remaining at rest. The shift in the frequency of these two lines of about 150 cm{sup −1} to lower energies observed in Cu{sub 2}B{sup II}C{sup IV}Se{sub 4}{sup VI} compounds as compared to those in Cu{sub 2}B{sup II}C{sup IV}S{sub 4}{sup VI} ones, can then be explained as due to the anion mass effect. Based on the fact that values of these frequencies depend mainly on anion mass and bond-stretching forces between nearest-neighbor atoms, the vibrational frequencies v{sup ¯}(A{sub 1}{sup 2}) and v{sup ¯}(A{sub 1}{sup 2}) of both modes for several Cu{sub 2}B{sup II}C{sup IV}X{sub 4}{sup VI} stannite compounds (where X = S, Se, or Te) very close to the experimental data reported for these materials were calculated from a simple model that relates these stretching forces to the anion-cation bond-distances.

  3. An experimental and theoretical investigation of Acenaphthene-5-boronic acid: conformational study, NBO and NLO analysis, molecular structure and FT-IR, FT-Raman, NMR and UV spectra.

    PubMed

    Karabacak, Mehmet; Sinha, Leena; Prasad, Onkar; Asiri, Abdullah M; Cinar, Mehmet

    2013-11-01

    The solid state Fourier transform infrared (FT-IR) and FT-Raman spectra of Acenaphthene-5-boronic acid (AN-5-BA), have been recorded in the range 4000-400cm(-1) and 4000-10cm(-1), respectively. Density functional theory (DFT), with the B3LYP functional was used for the optimization of the ground state geometry and simulation of the infrared and Raman spectra of the molecule. The vibrational wave numbers and their assignments were examined theoretically using the Gaussian 09 set of quantum chemistry codes and the normal modes were assigned by a scaled quantum mechanical (SQM) force field approach. Hydrogen-bonded dimer of AN-5-BA, optimized by counterpoise correction, has also been studied by B3LYP at the 6-311++G(d,p) level and the effects of molecular association through O-H⋯O hydrogen bonding have been discussed. The (1)H and (13)C nuclear magnetic resonance (NMR) chemical shifts of the molecule were calculated by Gauge-Including Atomic Orbital (GIAO) method. Natural bond orbital (NBO) analysis has been applied to study stability of the molecule arising from charge delocalization. UV spectrum of the title compound was also recorded and the electronic properties, such as frontier orbitals, and band gap energies were measured by TD-DFT approach. The first order hyperpolarizability 〈β〉, its components and associated properties such as average polarizability and anisotropy of the polarizability (α and Δα) of AN-5-BA was calculated using the finite-field approach. PMID:23892116

  4. An experimental and theoretical investigation of Acenaphthene-5-boronic acid: Conformational study, NBO and NLO analysis, molecular structure and FT-IR, FT-Raman, NMR and UV spectra

    NASA Astrophysics Data System (ADS)

    Karabacak, Mehmet; Sinha, Leena; Prasad, Onkar; Asiri, Abdullah M.; Cinar, Mehmet

    2013-11-01

    The solid state Fourier transform infrared (FT-IR) and FT-Raman spectra of Acenaphthene-5-boronic acid (AN-5-BA), have been recorded in the range 4000-400 cm-1 and 4000-10 cm-1, respectively. Density functional theory (DFT), with the B3LYP functional was used for the optimization of the ground state geometry and simulation of the infrared and Raman spectra of the molecule. The vibrational wave numbers and their assignments were examined theoretically using the Gaussian 09 set of quantum chemistry codes and the normal modes were assigned by a scaled quantum mechanical (SQM) force field approach. Hydrogen-bonded dimer of AN-5-BA, optimized by counterpoise correction, has also been studied by B3LYP at the 6-311++G(d,p) level and the effects of molecular association through O-H⋯O hydrogen bonding have been discussed. The 1H and 13C nuclear magnetic resonance (NMR) chemical shifts of the molecule were calculated by Gauge-Including Atomic Orbital (GIAO) method. Natural bond orbital (NBO) analysis has been applied to study stability of the molecule arising from charge delocalization. UV spectrum of the title compound was also recorded and the electronic properties, such as frontier orbitals, and band gap energies were measured by TD-DFT approach. The first order hyperpolarizability <β>, its components and associated properties such as average polarizability and anisotropy of the polarizability (α and Δα) of AN-5-BA was calculated using the finite-field approach.

  5. Surface-enhanced resonance Raman spectra of water-insoluble tetraphenylporphyrin and chlorophyll a on silver hydrosols with a dioxane molecular spacer

    NASA Astrophysics Data System (ADS)

    Woolley, Paul S.; Keely, Brendan J.; Hester, Ronald E.

    1996-08-01

    A surface-enhanced resonance Raman spectroscopic (SERRS) study of tetraphenylporphyrin (TTP) on a silver hydrosol, obtained by mixing a dioxane solution of the water-insoluble TPP with the hydrosol, indicates that there is no metallation of the porphyrin. By contrast, water-soluble porphyrins such as tetra-N-methylpyridylporphyrin (TMPyP) have been shown to undergo metallation. We suggest that the TPP is encapsulated within a dioxane envelope which is co-adsorbed to the surface of the silver hydrosol and functions as a molecular spacer. This spacer does not eliminate the analytical advantages afforded by SERRS, but does prevent significant perturbation from the native conformation, as is demonstrated by results obtained using chlorophyll a.

  6. Theoretical Investigation on the Substituent Effect of Halogen Atoms at the C8 Position of Adenine: Relative Stability, Vibrational Frequencies, and Raman Spectra of Tautomers.

    PubMed

    Chen, Yan-Li; Wu, De-Yin; Tian, Zhong-Qun

    2016-06-16

    We have theoretically investigated the substituent effect of adenine at the C8 position with a substituent X = H, F, Cl, and Br by using the density functional theory (DFT) at the B3LYP/6-311+G(d, p) level. The aim is to study the substituent effect of halogen atoms on the relative stability, vibrational frequencies, and solvation effect of tautomers. Our calculated results show that for substituted adenine molecules the N9H8X tautomer to be the most stable structure in gas phase at the present theoretical level. Here N9H8X denotes the hydrogen atom binds to the N9 position of imidazole ring and X denotes H, F, Cl, and Br atoms. The influence of the induced attraction of the fluorine substituent is significantly larger than chlorine and bromine ones. The halogen substituent effect has a significant influence on changes of vibrational frequencies and Raman intensities. PMID:27243104

  7. Theoretical Investigation on the Substituent Effect of Halogen Atoms at the C8 Position of Adenine: Relative Stability, Vibrational Frequencies, and Raman Spectra of Tautomers.

    PubMed

    Chen, Yan-Li; Wu, De-Yin; Tian, Zhong-Qun

    2016-06-16

    We have theoretically investigated the substituent effect of adenine at the C8 position with a substituent X = H, F, Cl, and Br by using the density functional theory (DFT) at the B3LYP/6-311+G(d, p) level. The aim is to study the substituent effect of halogen atoms on the relative stability, vibrational frequencies, and solvation effect of tautomers. Our calculated results show that for substituted adenine molecules the N9H8X tautomer to be the most stable structure in gas phase at the present theoretical level. Here N9H8X denotes the hydrogen atom binds to the N9 position of imidazole ring and X denotes H, F, Cl, and Br atoms. The influence of the induced attraction of the fluorine substituent is significantly larger than chlorine and bromine ones. The halogen substituent effect has a significant influence on changes of vibrational frequencies and Raman intensities.

  8. Poly-3-hydroxy butyric acid interaction with the transgenic flax fibers: FT-IR and Raman spectra of the composite extracted from a GM flax

    NASA Astrophysics Data System (ADS)

    Wróbel-Kwiatkowska, Magdalena; Żuk, Magdalena; Szopa, Jan; Dymińska, Lucyna; Mączka, Mirosław; Hanuza, Jerzy

    2009-07-01

    The FT-IR and FT-Raman studies have been performed on commercial 3-hydroxy-butyric acid, commercial poly-3-hydroxy butyric acid as well as poly-3-hydroxy butyric acid (PHB) produced by bacteria. The data were compared to those obtained for poly-3-hydroxy butyric acid extracted from natural and genetically modified flax. Genetically modified flax was generated by expression of three bacterial genes coding for synthesis of poly-3-hydroxy butyric acid. Thus transgenic flaxes were enhanced with different amount of the PHB. The discussion of polymer structure and vibrational properties has been done in order to get insight into differences among these materials. The interaction between the cellulose of flax fibers and embedded poly-3-hydroxybutyric acid has been also discussed. The spectroscopic data provide evidences for structural changes in cellulose and in PHB when synthesized in fibers. Based on this data it is suggesting that cellulose and PHB interact by hydrogen and ester bonds.

  9. NBO, HOMO, LUMO analysis and vibrational spectra (FTIR and FT Raman) of 1-Amino 4-methylpiperazine using ab initio HF and DFT methods

    NASA Astrophysics Data System (ADS)

    Mahalakshmi, G.; Balachandran, V.

    2015-01-01

    Experimental FTIR and FT-Raman spectroscopic analysis of 1-Amino-4-methylpiperazine (1A4MP) have been performed. A detailed quantum chemical calculations have been carried out using ab initio HF and density functional theory calculations (B3LYP) with 6-311+G(d,p) basis set. The atomic charges, electronic exchange interaction and charge delocalization of the molecule have been performed by natural bond orbital (NBO) analysis. Electron density distribution and frontier molecular orbitals (FMOs) have been constructed at B3LYP/6-311+G(d,p) level to understand the electronic properties. The charge density distribution and site of chemical reactivity of the molecule have been obtained by mapping electron density isosurface with electrostatic potential surfaces (ESP). The electronic properties, HOMO and LUMO energies were measured by time-dependent TD-DFT approach. The dipole moment (μ), polarizability (α), anisotropy polarizability (Δα) and hyperpolarizability (β) of the molecule have been reported.

  10. Characterization and identification of contraband using UV resonant Raman spectroscopy

    NASA Astrophysics Data System (ADS)

    Lacey, Richard J.; Hayward, Ian P.; Sands, H. S.; Batchelder, David N.

    1997-02-01

    A range of explosives and narcotics have been examined using Raman spectroscopy with 244 nm excitation. This wavelength of excitation eliminates the fluorescence problems associated with excitation at visible wavelengths. Comparison with spectra obtained using visible excitation reveals that resonance Raman scattering is occurring. This results in simplified spectra, and enhanced Raman scattering efficiencies.

  11. The conformational stability, solvation and the assignments of the experimental infrared, Raman, 1H and 13C NMR spectra of the local anesthetic drug lidocaine

    NASA Astrophysics Data System (ADS)

    Badawi, Hassan M.; Förner, Wolfgang; Ali, Shaikh A.

    2015-05-01

    The structure, vibrational and 1H and 13C NMR spectra of the local anesthetic drug lidocaine were investigated by the B3LYP/6-311G∗∗ calculations. The molecule was predicted to have the non-planar cis (NCCN ∼ 0°) structures being about 2-6 kcal/mol lower in energy than the corresponding trans (NCCN ∼ 180°) forms. The calculated NCCN (9.6°) and CNCC (-132.2°) torsional angles were in a good qualitative agreement with the reported X-ray angles (3.1 and 13.0°, -102.67 and -77.9°, respectively, for H-bonded dimers). The Gibbs energy of solution of lidocaine in formamide, water, dimethylsulfoxide, acetonitrile, methanol, ethanol and chloroform solutions was estimated at the B3LYP level. The predicted affinity of lidocaine toward the alcohols, acetonitrile and chloroform solutions was in excellent agreement with the reported experimental solubility of the drug in organic solvents. The analysis of the observed vibrational spectra is consistent with the presence of lidocaine in only one conformation at room temperature. The 1H and 13C NMR spectra of lidocaine were interpreted by experimental and DFT calculated chemical shifts of the drug. The RMSD between experimental and theoretical 1H and 13C chemical shifts for lidocaine is 0.47 and 8.26 ppm, respectively.

  12. Vibrational analysis using FT-IR, FT-Raman spectra and HF-DFT methods and NBO, NLO, NMR, HOMO-LUMO, UV and electronic transitions studies on 2,2,4-trimethyl pentane.

    PubMed

    Suvitha, A; Periandy, S; Govindarajan, M; Gayathri, P

    2015-03-01

    In this work, the vibrational spectral analysis was carried out by using Raman and infrared spectroscopy in the range 100-4000cm(-1)and 50-4000cm(-1), respectively, for 2,2,4-Trimethyl Pentane, TMP (C8H18) molecule. The molecular structure, fundamental vibrational frequencies and intensity of the vibrational bands are interpreted with the aid of structure optimizations and geometrical parameter calculations based on Hartree Fock (HF) and density functional theory (DFT) method with 6-311++G(d,p) basis set. The scaled B3LYP/6-311++G(d,p) results shows the best agreement with the experimental values over the other method. The calculated HOMO and LUMO energies shows that charge transfer within the molecule. The physical reactions of single bond hydrocarbon TMP were investigated. The results of the calculations were applied to simulate spectra of the title compound, which shows the excellent agreement with observed spectra. Besides, Mulliken atomic charges, UV, frontier molecular orbital (FMO), MEP, NLO activity, Natural Bond-Orbital (NBO) analysis, NMR and thermodynamic properties of title molecule were also performed.

  13. Mass spectrometric analysis of isotope effects in bioconversion of benzene to cyclohexanone

    NASA Astrophysics Data System (ADS)

    Nam, In-Hyun; Murugesan, Kumarasamy; Kim, Young-Mo; Yang, In-Hee; Chang, Yoon-Seok

    2006-06-01

    Pseudomonas veronii strain PH-03 has been shown to convert benzene to cyclohexanone through phenol. Mass spectrometry results revealed that unusual isotopic effects have been occurred in the transformation product, cyclohexanone. The isotopic composition was strongly depends on the compound specific hydrogen or oxygen source. The exchange of labile deuterium atoms has been investigated through electrospray ionization liquid chromatography mass spectrometry. The mass spectrometric analysis of biotransformation products enabled the proposal of a corresponding bioconversion pathway.

  14. Solubilities and raman spectra of NdOCl in some chloride melts of interest for the electrowinning of magnesium from its oxide

    NASA Astrophysics Data System (ADS)

    Mediaas, H.; Tkatcheva, O.; Dracopoulos, V.; Papatheodorou, G. N.; Kipouros, G. J.; Østvold, T.

    2000-08-01

    Some fundamental data related to the solvent proposed for a new technical electrolytic process for magnesium production based on MgO as the raw material are presented. Liquidus data are obtained for MgCl2-rich melts in the MgCl2-NdOCl system. The solubility of MgO and NdOCl in pure liquid NdCl3, MgO in NdCl3-MgCl2 and in MgCl2-NdCl3-NaCl liquid mixtures, and NdOCl in CaCl2 and Cs2MgCl4 have also been studied. The solubility of MgO decreases when MgCl2 is added to the pure NdCl3 and further by additions of NaCl as expected. A so far unidentified compound having the composition Mg x Nd y OCl2 x-3 y-2 where x and y are larger than 1 seems to be formed in very small amounts in these melts. This compound seems to precipitate at temperatures higher than 910 °C in the NdCl3-MgO quasi-binary system containing about 8 mol pct MgO and seems to remain suspended in the melt in small quantities. The first liquid-solid phase transition observed, however, was the NdCl3 (1)=NdCl3 (s) transition <758 °C. X-ray diffraction (XRD) data of filtered samples of this solid show new X-ray lines not detected in MgCl2, NdCl3, NaCl, MgO, and NdOCl. The published phase diagram of the quasi binary system MgCl2-NdOCl is, according to the present work, not correct because the solubility of MgO seems to be much less than previously reported. Raman spectroscopic data of NdCl3-MgCl2-NdOCl melts show the known features of the NdCl3-MgCl2 and NdCl3-NdOCl melts. Raman bands due to dissolved species of the unidentified compound were not detected. In view of the obvious small concentration of this species in the liquid phase, this was reasonable.

  15. FT-IR and FT-Raman spectra, molecular structure and first-order molecular hyperpolarizabilities of a potential antihistaminic drug, cyproheptadine HCl.

    PubMed

    Sagdinc, Seda G; Erdas, Dilek; Gunduz, Ilknur; Sahinturk, Ayse Erbay

    2015-01-01

    Cyproheptadine hydrochloride (CYP HCl) {4-(5H-dibenzo[a,d]-cyclohepten-5-ylidene)-1-methylpiperidine hydrochloride} is a first-generation antihistamine with additional anticholinergic, antiserotonergic, and local-anesthetic properties. The geometry optimization, Mulliken atomic charges and wavenumber and intensity of the vibrational bands of all of the possible modes of CYP HCl have been calculated using ab initio Hartree-Fock (HF) and density functional theory (DFT) employing the B3LYP functional with the 6-311G(d,p) basis set. We have compared the calculated IR and Raman wavenumbers with experimental data. Quantum-chemical calculations of the geometrical structure, energies, and molecular electrostatic potential and NBO analysis of CYP HCl have been performed using the B3LYP/6-311G(d,p) method. The electric dipole moment (μ), static polarizability (α) and the first hyperpolarizability (β) values of the title compound have been computed using HF and DFT methods. The study reveals that the antihistaminic pharmacological property of CYP HCl has a large β value and, hence, may in general have potential applications in the development of non-linear optical materials. The experimental and calculated results for CYP HCl have also been compared with those for mianserin HCl.

  16. FT-IR and FT-Raman spectra, molecular structure and first-order molecular hyperpolarizabilities of a potential antihistaminic drug, cyproheptadine HCl

    NASA Astrophysics Data System (ADS)

    Sagdinc, Seda G.; Erdas, Dilek; Gunduz, Ilknur; Sahinturk, Ayse Erbay

    2015-01-01

    Cyproheptadine hydrochloride (CYP HCl) {4-(5H-dibenzo[a,d]-cyclohepten-5-ylidene)-1-methylpiperidine hydrochloride} is a first-generation antihistamine with additional anticholinergic, antiserotonergic, and local-anesthetic properties. The geometry optimization, Mulliken atomic charges and wavenumber and intensity of the vibrational bands of all of the possible modes of CYP HCl have been calculated using ab initio Hartree-Fock (HF) and density functional theory (DFT) employing the B3LYP functional with the 6-311G(d,p) basis set. We have compared the calculated IR and Raman wavenumbers with experimental data. Quantum-chemical calculations of the geometrical structure, energies, and molecular electrostatic potential and NBO analysis of CYP HCl have been performed using the B3LYP/6-311G(d,p) method. The electric dipole moment (μ), static polarizability (α) and the first hyperpolarizability (β) values of the title compound have been computed using HF and DFT methods. The study reveals that the antihistaminic pharmacological property of CYP HCl has a large β value and, hence, may in general have potential applications in the development of non-linear optical materials. The experimental and calculated results for CYP HCl have also been compared with those for mianserin HCl.

  17. Influence of piezoelectric strain on the Raman spectra of BiFeO3 films deposited on PMN-PT substrates

    DOE PAGES

    Himcinschi, Cameliu; Guo, Er -Jia; Talkenberger, Andreas; Dorr, Kathrin; Kortus, Jens

    2016-01-27

    In this study, BiFeO3 epitaxial thin films were deposited on piezoelectric 0.72Pb(Mg1/3Nb2/3)O3-0.28PbTiO3 (PMN-PT) substrates with a conductive buffer layer (La0.7Sr0.3MnO3 or SrRuO3) using pulsed laser deposition. The calibration of the strain values induced by the electric field applied on the piezoelectric PMN-PT substrates was realised using X-Ray diffraction measurements. The method of piezoelectrically induced strain allows to obtain a quantitative correlation between strain and the shift of the Raman-active phonons, ruling out the influence of extrinsic factors, such as growth conditions, crystalline quality of substrates, or film thickness. Using the Poisson number for BiFeO3 one can determine the volume changemore » induced by strain, and therefore the Gr neisen parameters for specific phonon modes.« less

  18. UV Raman spectroscopy of hydrocarbons.

    PubMed

    Loppnow, G R; Shoute, L; Schmidt, K J; Savage, A; Hall, R H; Bulmer, J T

    2004-11-15

    In this paper, the UV Raman spectra of a large number of saturated and alkyl-substituted monocyclic, bicyclic and polycyclic aromatic hydrocarbons are obtained at 220 and 233 nm excitation wavelengths. Also included are nitrogen- and sulphur-containing hydrocarbons. The spectra obtained are fluorescence free, even for such highly fluorescent compounds as perylene, consistent with earlier reports of UV Raman spectra of hydrocarbons. The hydrocarbon UV Raman spectra exhibit greatly improved signal-to-noise ratio when in the neat liquid or solution state compared with the neat solid state, suggesting that some surface degradation occurs under the conditions used here. Assignments are given for most of the bands and clear marker bands for the different classes of hydrocarbons are readily observable, although their relative intensities vary greatly. These results are discussed in the context of structure and symmetry to develop a consistent, molecular-based model of vibrational group frequencies. PMID:15482987

  19. Simultaneous biocatalyst production and Baeyer-Villiger oxidation for bioconversion of cyclohexanone by recombinant Escherichia coli expressing cyclohexanone monooxygenase.

    PubMed

    Lee, Won-Heong; Park, Yong-Cheol; Lee, Dae-Hee; Park, Kyungmoon; Seo, Jin-Ho

    2005-01-01

    Cyclohexanone monooxygenase (CHMO) catalyzing Baeyer-Villiger oxidation converts cyclic ketones into optically pure lactones, which have been used as building blocks in organic synthesis. A recombinant Escherichia coli BL21(DE3)/pMM4 expressing CHMO originated from Acinetobacter sp. NCIB 9871 was used to produce epsilon-caprolactone through a simultaneous biocatalyst production and Baeyer-Villiger oxidation (SPO) process. A fed-batch process was designed to obtain high cell density for improving production of epsilon-caprolactone. The fed-batch SPO process gave the best results, 10.2 g/L of epsilon-caprolactone and 0.34 g/(L.h) of productivity, corresponding to a 10.5- and 3.4-fold enhancement compared with those of the batch SPO, respectively.

  20. Wavelength dependent resonance Raman band intensity of broadband stimulated Raman spectroscopy of malachite green in ethanol.

    PubMed

    Cen, Qiongyan; He, Yuhan; Xu, Mei; Wang, Jingjing; Wang, Zhaohui

    2015-03-21

    Resonance broadband stimulated Raman spectroscopy of malachite green in ethanol has been performed. With a tuning picosecond visible laser source and a broadband Raman probe, the Raman gain and loss spectra have been measured simultaneously. By scanning the Raman pump across the first absorption band of the molecule, we found that the resonant Raman bands could be only seen when the pump laser tuned in the range of the red edge of the S1←S0 transition. Dispersive lineshapes of resonant Raman bands have been observed in the Raman loss spectra, while the line shape is normal (same as spontaneous Raman) in the Raman gain spectra. Although, the resonant bands in the loss spectrum are usually stronger than that in the gain spectrum, the band intensities of both loss and gain linearly increase with the pump energy. The relative magnitude of each corresponding resonant band in the Raman loss and gain varies with the pump wavelength. Mode specified Raman excitation profiles have been obtained through broadband stimulated Raman measurement.

  1. Wavelength dependent resonance Raman band intensity of broadband stimulated Raman spectroscopy of malachite green in ethanol

    NASA Astrophysics Data System (ADS)

    Cen, Qiongyan; He, Yuhan; Xu, Mei; Wang, Jingjing; Wang, Zhaohui

    2015-03-01

    Resonance broadband stimulated Raman spectroscopy of malachite green in ethanol has been performed. With a tuning picosecond visible laser source and a broadband Raman probe, the Raman gain and loss spectra have been measured simultaneously. By scanning the Raman pump across the first absorption band of the molecule, we found that the resonant Raman bands could be only seen when the pump laser tuned in the range of the red edge of the S1←S0 transition. Dispersive lineshapes of resonant Raman bands have been observed in the Raman loss spectra, while the line shape is normal (same as spontaneous Raman) in the Raman gain spectra. Although, the resonant bands in the loss spectrum are usually stronger than that in the gain spectrum, the band intensities of both loss and gain linearly increase with the pump energy. The relative magnitude of each corresponding resonant band in the Raman loss and gain varies with the pump wavelength. Mode specified Raman excitation profiles have been obtained through broadband stimulated Raman measurement.

  2. Raman and coherent anti-Stokes Raman scattering microspectroscopy for biomedical applications.

    PubMed

    Krafft, Christoph; Dietzek, Benjamin; Schmitt, Michael; Popp, Jürgen

    2012-04-01

    A tutorial article is presented for the use of linear and nonlinear Raman microspectroscopies in biomedical diagnostics. Coherent anti-Stokes Raman scattering (CARS) is the most frequently applied nonlinear variant of Raman spectroscopy. The basic concepts of Raman and CARS are introduced first, and subsequent biomedical applications of Raman and CARS are described. Raman microspectroscopy is applied to both in-vivo and in-vitro tissue diagnostics, and the characterization and identification of individual mammalian cells. These applications benefit from the fact that Raman spectra provide specific information on the chemical composition and molecular structure in a label-free and nondestructive manner. Combining the chemical specificity of Raman spectroscopy with the spatial resolution of an optical microscope allows recording hyperspectral images with molecular contrast. We also elaborate on interfacing Raman spectroscopic tools with other technologies such as optical tweezing, microfluidics and fiber optic probes. Thereby, we aim at presenting a guide into one exciting branch of modern biophotonics research.

  3. Raman and coherent anti-Stokes Raman scattering microspectroscopy for biomedical applications

    NASA Astrophysics Data System (ADS)

    Krafft, Christoph; Dietzek, Benjamin; Schmitt, Michael; Popp, Jürgen

    2012-04-01

    A tutorial article is presented for the use of linear and nonlinear Raman microspectroscopies in biomedical diagnostics. Coherent anti-Stokes Raman scattering (CARS) is the most frequently applied nonlinear variant of Raman spectroscopy. The basic concepts of Raman and CARS are introduced first, and subsequent biomedical applications of Raman and CARS are described. Raman microspectroscopy is applied to both in-vivo and in-vitro tissue diagnostics, and the characterization and identification of individual mammalian cells. These applications benefit from the fact that Raman spectra provide specific information on the chemical composition and molecular structure in a label-free and nondestructive manner. Combining the chemical specificity of Raman spectroscopy with the spatial resolution of an optical microscope allows recording hyperspectral images with molecular contrast. We also elaborate on interfacing Raman spectroscopic tools with other technologies such as optical tweezing, microfluidics and fiber optic probes. Thereby, we aim at presenting a guide into one exciting branch of modern biophotonics research.

  4. Effects of anisotropic interaction-induced properties of hydrogen-rare gas compounds on rototranslational Raman scattering spectra: Comprehensive theoretical and numerical analysis

    NASA Astrophysics Data System (ADS)

    Głaz, Waldemar; Bancewicz, Tadeusz; Godet, Jean-Luc; Gustafsson, Magnus; Haskopoulos, Anastasios; Maroulis, George

    2016-07-01

    A comprehensive study is presented of many aspects of the depolarized anisotropic collision induced (CI) component of light scattered by weakly bound compounds composed of a dihydrogen molecule and a rare gas (Rg) atom, H2-Rg. The work continues a series of earlier projects marking the revival of interest in linear light scattering following the development of new highly advanced tools of quantum chemistry and other theoretical, computational, and experimental means of spectral analyses. Sophisticated ab initio computing procedures are applied in order to obtain the anisotropic polarizability component's dependence on the H2-Rg geometry. These data are then used to evaluate the CI spectral lines for all types of Rg atoms ranging from He to Xe (Rn excluded). Evolution of the properties of CI spectra with growing polarizability/masses of the complexes studied is observed. Special attention is given to the heaviest, Kr and Xe based, scatterers. The influence of specific factors shaping the spectral lines (e.g., bound and metastable contribution, potential anisotropy) is discussed. Also the share of pressure broadened allowed rotational transitions in the overall spectral profile is taken into account and the extent to which it is separable from the pure CI contribution is discussed. We finish with a brief comparison between the obtained results and available experimental data.

  5. Effects of anisotropic interaction-induced properties of hydrogen-rare gas compounds on rototranslational Raman scattering spectra: Comprehensive theoretical and numerical analysis.

    PubMed

    Głaz, Waldemar; Bancewicz, Tadeusz; Godet, Jean-Luc; Gustafsson, Magnus; Haskopoulos, Anastasios; Maroulis, George

    2016-07-21

    A comprehensive study is presented of many aspects of the depolarized anisotropic collision induced (CI) component of light scattered by weakly bound compounds composed of a dihydrogen molecule and a rare gas (Rg) atom, H2-Rg. The work continues a series of earlier projects marking the revival of interest in linear light scattering following the development of new highly advanced tools of quantum chemistry and other theoretical, computational, and experimental means of spectral analyses. Sophisticated ab initio computing procedures are applied in order to obtain the anisotropic polarizability component's dependence on the H2-Rg geometry. These data are then used to evaluate the CI spectral lines for all types of Rg atoms ranging from He to Xe (Rn excluded). Evolution of the properties of CI spectra with growing polarizability/masses of the complexes studied is observed. Special attention is given to the heaviest, Kr and Xe based, scatterers. The influence of specific factors shaping the spectral lines (e.g., bound and metastable contribution, potential anisotropy) is discussed. Also the share of pressure broadened allowed rotational transitions in the overall spectral profile is taken into account and the extent to which it is separable from the pure CI contribution is discussed. We finish with a brief comparison between the obtained results and available experimental data. PMID:27448883

  6. Hadamard transform visible Raman spectrometry

    SciTech Connect

    Tilotta, D.C.; Freeman, R.D.; Fateley, W.G.

    1987-11-01

    The successful application of LC-SLM Hadamard transform spectrometry as a simultaneous multiwavelength detection system to Raman spectroscopy is presented. Multiplexed Raman data are obtained with the use of an Ar/sup +/ laser lasing at 514.5 nm and a room-temperature silicon photodiode. A conventional 90/sup 0/ scattering geometry is employed for measurements. It is demonstrated that the LC-SLM Hadamard transform Raman spectrometer possesses the capability of performing spectral subtraction and the ability to obtain depolarization ratios of Raman bands, and can function as a selectively tunable optical filter for both Rayleigh line rejection and optical band notching. It is also demonstrated that, for the Hadamard transform Raman experiment, the silicon photodiode used as the detector produces spectra with slightly better signal-to-noise ratios than those obtained with the photomultiplier tube (PMT) used as the detector, although the PMT shows an increase in sensitivity.

  7. Deciphering the Finger Prints of Brain Cancer Glioblastoma Multiforme from Four Different Patients by Using Near Infrared Raman Spectroscopy

    PubMed Central

    Banerjee, Hirendra Nath; Banerji, Arnold; Banerjee, Arunendra Nath; Riddick, Eilena; Petis, Jenae; Evans, Shavonda; Patel, Megha; Parson, Carl; Smith, Valerie; Gwebu, E.; Voisin, Sarah

    2015-01-01

    To explore the effectiveness of Raman spectra to diagnose brain cancer glioblastoma multiforme (GBM), we investigated the Raman spectra of single cell from four different GBM cell lines developed from four different patients and analyzed the spectra. The Raman spectra of brain cancer (GBM) cells were similar in all these cell lines. The results indicate that Raman spectra can offer the experimental basis for the cancer diagnosis and treatment. PMID:25937869

  8. Vibrational (FT-IR and FT-Raman) spectra and quantum chemical studies on the molecular orbital calculations, chemical reactivity and thermodynamic parameters of 2-chloro-5-(trifluoromethyl) aniline

    NASA Astrophysics Data System (ADS)

    Karthick, T.; Balachandran, V.; Perumal, S.; Nataraj, A.

    2013-04-01

    In this work, the vibrational characteristics of 2-chloro-5-(trifluoromethyl) aniline have been investigated and both the experimental and theoretical vibrational data indicate the presence of various functional groups within the title molecule. The influence of chlorine substituent on the vibrational wavenumbers of a molecule in comparison with aniline and trifluoromethyl aniline has been discussed in detail. The density functional theoretical (DFT) computations were performed at the B3LYP/6-31++G(3df,3pd)/6-31G(3df,3pd) levels to derive the optimized geometry, vibrational wavenumbers with IR and Raman intensities. Furthermore, the molecular orbital calculations such as; natural bond orbitals (NBOs) and HOMO-LUMO energy gap and mapped molecular electrostatic potential (MEP) surfaces were also performed with the same level of DFT. The temperature dependence thermodynamic parameters of a molecule were illustrated on the basis of their correlation graphs. The detailed interpretation of the vibrational spectra has been carried out with the aid of potential energy distribution (PED) results obtained from MOLVIB program. The delocalization of electron density in various constituents of the molecule has been discussed with the aid of NBO and HOMO-LUMO energy gap analysis.

  9. Raman spectroscopy under extreme conditions

    SciTech Connect

    Goncharov, A F; Crowhurst, J C

    2004-11-05

    We report the results of Raman measurements of various materials under simultaneous conditions of high temperature and high pressure in the diamond anvil cell (DAC). High temperatures are generated by laser heating or internal resistive (ohmic) heating or a combination of both. We present Raman spectra of cubic boron nitride (cBN) to 40 GPa and up to 2300 K that show a continuous pressure and temperature shift of the frequency of the transverse optical mode. We have also obtained high-pressure Raman spectra from a new noble metal nitride, which we synthesized at approximately 50 GPa and 2000 K. We have obtained high-temperature spectra from pure nitrogen to 39 GPa and up to 2000 K, which show the presence of a hot band that has previously been observed in CARS measurements. These measurements have also allowed us to constrain the melting curve and to examine changes in the intramolecular potential with pressure.

  10. Raman spectroscopy of shocked water

    SciTech Connect

    Holmes, N.C.; Mitchell, A.C.; Nellis, W.J.; Graham, W.B.; Walrafen, G.E.

    1983-07-01

    Raman scattering has been used extensively to study the vibrational and rotational properties of molecules under a variety of conditions. Here, interest is in the behavior of water molecules shocked to high pressures and temperatures. Behind the shock front the water molecules undergo changes in bonding and the molecules may become ionized. Raman spectroscopy can be used to determine the molecular species behind the shock front. In addition, changes in Raman spectra can yield information regarding inter- and intramolecular potentials and the temperature behind the shock front.

  11. Characterization of an FMN-containing cyclohexanone monooxygenase from a cyclohexane-grown Xanthobacter sp.

    PubMed

    Trower, M K; Buckland, R M; Griffin, M

    1989-04-15

    A soluble cyclohexanone monooxygenase was purified 16.1-fold to homogeneity from a Xanthobacter sp. grown upon cyclohexane as sole source of carbon and energy. The native enzyme is a 50-kDa single polypeptide chain associated with FMN rather than FAD as flavin prosthetic group in a 1:1 stoichiometric relationship. The monooxygenase catalyses the transformation of cyclohexanone to the lactone 1-oxa-2-oxocycloheptane in an oxygen ring insertion reaction. Only related cycloalkanone substrates are accepted for oxygenation, no activity is shown towards straight-chain alkanones. Enzyme activity is strongly inhibited by sulphydryl-reactive agents, but is relatively insensitive to metal chelators, electron transport inhibitors and the metal ions Fe3+ and Cu2+. Cyclohexanone monooxygenase has Km values for cyclohexanone and NADPH of less than 0.5 microM and 12.5 microM respectively. Kinetic investigations under steady-state conditions demonstrate that the flavoprotein prosthetic group, FMN, is involved in the monooxygenase catalytic mechanism. The systematic name for the enzyme is cyclohexanone, NADPH:oxygen oxidoreductase (6-hydroxylating, 1,2-lactonizing) (EC 1.14.13.22).

  12. Assessment of the toxicity of cyclohexanone administered intravenously to Wistar and Gunn rats.

    PubMed

    Greener, Y; Martis, L; Indacochea-Redmond, N

    1982-09-01

    The toxicity of cyclohexanone, used as a solvent cement in polyvinyl chloride medical devices, was assessed in Wistar and Gunn rats. The Gunn rat was used because it has a negligible activity of UDP glucuronosyltransferase toward bilirubin and certain other aglycones. Cyclohexanone was administered iv for 28 consecutive days to Wistar and Gunn rats in two doses (50 and 100 mg/kg), using solutions containing 0.25 and 0.50 g per 100 ml, respectively, at a constant volume of 20 mg/kg. Saline (0.9% NaCl) was used as the control. Daily observations for signs of toxicity showed no adverse effects in Wistar or Gunn rats injected with either dose. Daily weight changes of control and test animals were similar. Ophthalmologic examinations revealed no treatment-related structural lesions. No adverse effects were noted when the data from the hemogram or clinical chemistry parameters were evaluated. Gross pathological and histopathologic assessment showed no alterations due to cyclohexanone treatment. Urinary excretions of total and glucuronide conjugates of cyclohexanol were similar for Wistar and Gunn rats; less than 1% was excreted as free cyclohexanone and cyclohexanol. It is concluded that the Gunn rat is capable of forming glucuronides of cyclohexanol and that cyclohexanone at these doses has a negligible toxic potential.

  13. Simultaneous identification of two cyclohexanone oxidation genes from an environmental Brevibacterium isolate using mRNA differential display.

    PubMed

    Brzostowicz, P C; Gibson, K L; Thomas, S M; Blasko, M S; Rouvière, P E

    2000-08-01

    The technique of mRNA differential display was used to identify simultaneously two metabolic genes involved in the degradation of cyclohexanone in a new halotolerant Brevibacterium environmental isolate. In a strategy based only on the knowledge that cyclohexanone oxidation was inducible in this strain, the mRNA population of cells exposed to cyclohexanone was compared to that of control cells using reverse transcription-PCR reactions primed with a collection of 81 arbitrary oligonucleotides. Three DNA fragments encoding segments of flavin monooxygenases were isolated with this technique, leading to the identification of the genes of two distinct cyclohexanone monooxygenases, the enzymes responsible for the oxidation of cyclohexanone. Each monooxygenase was expressed in Escherichia coli and characterized. This work validates the application of mRNA differential display for the discovery of new microbial metabolic genes.

  14. [Rapid detection of residual cyclohexanone in disposable medical devices by ultraviolet photoionization ion mobility spectrometry (UV-IMS)].

    PubMed

    Li, Hu; Han, Hai-yan; Niu, Wen-qi; Wang, Hong-mei; Huang, Chao-qun; Jiang, Hai-he; Chu, Yan-nan

    2012-01-01

    In the manufacture of disposable PVC medical devices, cyclohexanone is frequently used as an adhesive reagent, which can be released into the tube airspace or stored solution and thus may cause some adverse effects on patients in therapy. In this paper, an ultraviolet photoionization ion mobility spectrometry (UV-IMS) technique has been developed to detect cyclohexanone through monitoring the gas composition within a package of infusion sets. The concentrations of cyclohexanone were prepared by means of exponential dilution method, and the experiments show that the UV-IMS has a limit of detection at 15 ppb and its measurable linear dynamics range is over three orders of magnitude. The concentrations of cyclohexanone in three brands of infusion sets packages were determined to be 16.78, 17.59 and 46.69 ppm respectively. The UV-IMS is proposed as a tool for the quality control of medical devices to monitor illegal uses of chemical solvents like cyclohexanone.

  15. Vibrational and vibronic spectra of tryptamine conformers

    NASA Astrophysics Data System (ADS)

    Mayorkas, Nitzan; Bernat, Amir; Izbitski, Shay; Bar, Ilana

    2013-03-01

    Conformation-specific ionization-detected stimulated Raman spectra, including both Raman loss and Raman gain lines, along with visible-visible-ultraviolet hole-burning spectra of tryptamine (TRA) conformers have been measured simultaneously, with the aim of obtaining new data for identifying them. The slightly different orientations of the ethylamine side chain relative to the indole lead to unique spectral signatures, pointing to the presence of seven TRA conformers in the molecular beam. Comparison of ionization-loss stimulated Raman spectra to computationally scaled harmonic Raman spectra, especially in the alkyl C-H and amine N-H stretch regions together with the retrieved information on the stabilities of the TRA conformers assisted their characterization and structural identification. The prospects and limitations of using these spectroscopic methods as potential conformational probes of flexible molecules are discussed.

  16. Raman Spectroscopy.

    ERIC Educational Resources Information Center

    Gerrard, Donald L.

    1984-01-01

    Reviews literature on Raman spectroscopy from late 1981 to late 1983. Topic areas include: instrumentation and sampling; liquids and solutions; gases and matrix isolation; biological molecules; polymers; high-temperature and high-pressure studies; Raman microscopy; thin films and surfaces; resonance-enhanced and surface-enhanced spectroscopy; and…

  17. Synthesis and cytotoxic potential of heterocyclic cyclohexanone analogues of curcumin.

    PubMed

    Yadav, Babasaheb; Taurin, Sebastien; Rosengren, Rhonda J; Schumacher, Marc; Diederich, Marc; Somers-Edgar, Tiffany J; Larsen, Lesley

    2010-09-15

    A series of 18 heterocyclic cyclohexanone analogues of curcumin have been synthesised and screened for their activity in both adherent and non-adherent cancer cell models. Cytotoxicity towards MBA-MB-231 breast cancer cells, as well as ability to inhibit NF-kappaB transactivation in non-adherent K562 leukemia cells were investigated. Three of these analogues 3,5-bis(pyridine-4-yl)-1-methylpiperidin-4-one B1, 3,5-bis(3,4,5-trimethoxybenzylidene)-1-methylpiperidin-4-one B10, and 8-methyl-2,4-bis((pyridine-4-yl)methylene)-8-aza-bicyclo[3.2.1]octan-3-one C1 showed potent cytotoxicity towards MBA-MB-231, MDA-MB-468, and SkBr3 cell lines with EC50 values below 1 microM and inhibition of NF-kappaB activation below 7.5 microM. The lead drug candidate, B10, was also able to cause 43% of MDA-MB-231 cells to undergo apoptosis after 18 h. This level of activity warrants further investigation for the treatment of ER-negative breast cancer and/or chronic myelogenous leukemia as prototypical cellular models for solid and liquid tumors.

  18. Capillary gas chromatographic determination of cyclohexanone and 2-ethyl-1-hexanol leached from solution administration sets.

    PubMed

    Danielson, J W

    1991-01-01

    A capillary gas chromatographic method is described for the determination of cyclohexanone and 2-ethyl-1-hexanol leached from solution administration sets. A preliminary study was made of compounds leached from solution administration sets by 5% sodium bicarbonate solution (pH 8.1), 0.9% sodium chloride solution (pH 6.8), and water. Water was selected as the leaching solvent because similar quantities of the compounds were leached into water and into both types of parenteral solutions. The correlation coefficients were 0.99977 for cyclohexanone and 0.99974 for 2-ethyl-1-hexanol, and recoveries were good (93-94%). Five administration sets from each of 2 manufacturers were analyzed by this method. The amounts of cyclohexanone that were leached from the individual sets varied considerably; however, similar quantities were leached from sets of both manufacturers. 2-Ethyl-1-hexanol was also found in extracts from each of the sets analyzed.

  19. Raman spectroscopy for identification of wood species

    NASA Astrophysics Data System (ADS)

    Gerasimov, V. A.; Gurovich, A. M.; Kostrin, D. K.; Selivanov, L. M.; Simon, V. A.; Stuchenkov, A. B.; Paltcev, A. V.; Uhov, A. A.

    2016-08-01

    This article discusses the application of Raman spectroscopy for identification of wood species. Use of Raman spectroscopy allows increasing the certainty of determining the type of wood compared to the analysis of spectra of diffuse reflectance. Raman spectrums of different wood samples when irradiated by laser radiation are shown. Ways to improve the determination reliability of wood species due to the modernization of the identification technique are discussed. The stages of data processing, allowing carrying out correct further analysis are described.

  20. Oxidation of cyclohexanone and 2-hydroxycyclohexanone in presence of chromium naphthenate

    SciTech Connect

    Frerdin, B.G.; Borodina, O.V.; PerkelH, A.L.

    1986-06-01

    The authors determine the influence of the catalytic chromium salt on the course of conversion of cyclohexanone and 2-hydroxycyclohexanone. It is seen from data obtained by interpolation that the concentration of peroxides is considerably lower in the presence of the catalyst, evidently because of their higher decomposition rate. Decomposition of monofunctional secondary hydroperoxides in the presence of chromium salts gives higher ketone yields. In distinction from polymethylene hydrocarbons, which form carbonyl compounds, cyclohexanone is conerted in the presence of chromium salts predominantly through 2-hydroxycyclohexanone.

  1. HOMO-LUMO, UV, NLO, NMR and vibrational analysis of 3-methyl-1-phenylpyrazole using FT-IR, FT-RAMAN FT-NMR spectra and HF-DFT computational methods.

    PubMed

    Carthigayan, K; Xavier, S; Periandy, S

    2015-05-01

    In this paper, the spectral analysis of 3-methyl-1-phenylpyrazole is carried out using the FT-IR, FT Raman, FT NMR and UV-Vis spectra with the help of quantum mechanical computations using HF and density functional theories. The different conformers of the compound and their minimum energies are studied using B3LYP functional with 6-311+G (d,p) basis set and the most stable conformer with minimum energy was identified and the same conformer was used for further computations. The computed wave numbers from different methods are scaled so as to agree with the experimental values and the scaling factors are reported. All the modes of vibrations are assigned and the structure the molecule is analyzed in terms of parameters like bond length, bond angle and dihedral angle predicted by both HF and B3LYP methods with 6-311+G (d,p) and 6-311++G (d,p) basis sets. The values of dipole moment (μ), polarizability (α) and hyperpolarizability (β) of the molecule are reported, using which the non-linear property of the molecule is discussed. The HOMO-LUMO mappings are reported which reveals the different charge transfer possibilities within the molecule. The isotropic chemical shifts predicted for (1)H and (13)C atoms using gauge invariant atomic orbital (GIAO) theory show good agreement with experimental shifts. NBO analysis is carried out to picture the charge transfer between the localized bonds and lone pairs. The thermodynamic properties (heat capacity, entropy and enthalpy) at different temperatures are also calculated. PMID:25710893

  2. HOMO-LUMO, UV, NLO, NMR and vibrational analysis of 3-methyl-1-phenylpyrazole using FT-IR, FT-RAMAN FT-NMR spectra and HF-DFT computational methods.

    PubMed

    Carthigayan, K; Xavier, S; Periandy, S

    2015-05-01

    In this paper, the spectral analysis of 3-methyl-1-phenylpyrazole is carried out using the FT-IR, FT Raman, FT NMR and UV-Vis spectra with the help of quantum mechanical computations using HF and density functional theories. The different conformers of the compound and their minimum energies are studied using B3LYP functional with 6-311+G (d,p) basis set and the most stable conformer with minimum energy was identified and the same conformer was used for further computations. The computed wave numbers from different methods are scaled so as to agree with the experimental values and the scaling factors are reported. All the modes of vibrations are assigned and the structure the molecule is analyzed in terms of parameters like bond length, bond angle and dihedral angle predicted by both HF and B3LYP methods with 6-311+G (d,p) and 6-311++G (d,p) basis sets. The values of dipole moment (μ), polarizability (α) and hyperpolarizability (β) of the molecule are reported, using which the non-linear property of the molecule is discussed. The HOMO-LUMO mappings are reported which reveals the different charge transfer possibilities within the molecule. The isotropic chemical shifts predicted for (1)H and (13)C atoms using gauge invariant atomic orbital (GIAO) theory show good agreement with experimental shifts. NBO analysis is carried out to picture the charge transfer between the localized bonds and lone pairs. The thermodynamic properties (heat capacity, entropy and enthalpy) at different temperatures are also calculated.

  3. Raman spectroscopy of white wines.

    PubMed

    Martin, Coralie; Bruneel, Jean-Luc; Guyon, François; Médina, Bernard; Jourdes, Michael; Teissedre, Pierre-Louis; Guillaume, François

    2015-08-15

    The feasibility of exploiting Raman scattering to analyze white wines has been investigated using 3 different wavelengths of the incoming laser radiation in the near-UV (325 nm), visible (532 nm) and near infrared (785 nm). To help in the interpretation of the Raman spectra, the absorption properties in the UV-visible range of two wine samples as well as their laser induced fluorescence have also been investigated. Thanks to the strong intensity enhancement of the Raman scattered light due to electronic resonance with 325 nm laser excitation, hydroxycinnamic acids may be detected and analyzed selectively. Fructose and glucose may also be easily detected below ca. 1000 cm(-1). This feasibility study demonstrates the potential of the Raman spectroscopic technique for the analysis of white wines.

  4. [Raman spectrum study on turquoise].

    PubMed

    Chen, Quan-Li; Qi, Li-Jian; Chen, Jing-Zhong

    2009-02-01

    The Raman spectrum has been employed to discuss the explanation of the structure of water and the vibration of [PO4(3-)] tetrahedron of the turquoise from Hubei and Anhui province. The Raman spectra are resulted mainly from vibrations of water, hydroxyl units and [PO4(3-)] tetrahedron of turquoise. The 3 510-3 440 cm(-1) bands with the main Raman spectra peak at 3 470 cm(-1) were assigned to the upsilon(OH) stretching vibrations and the 3 290-3 070 cm(-1) bands assigned to the upsilon(H2O) stretching vibrations. The bands observed at 1 200-1 030 cm(-1) with the strong peak at 1 039 cm(-1) were assigned to upsilon3 (PO4) antisymmetric stretching vibrations. And the Raman spectra peaks at 650-540 cm(-1) and 500-410 cm(-1) were attributed to the upsilon4 and upsilon2 bending vibrations of [PO4(3-)] tetrahedron, respectively. The spectra of the turquoise from different localities are basically similar and subtly different.

  5. Kerr-gated picosecond Raman spectroscopy and Raman photon migration of equine bone tissue with 400-nm excitation

    NASA Astrophysics Data System (ADS)

    Morris, Michael D.; Goodship, Allen E.; Draper, Edward R. C.; Matousek, Pavel; Towrie, Michael; Parker, Anthony W.

    2004-07-01

    We show that Raman spectroscopy with visible lasers, even in the deep blue is possible with time-gated Raman spectroscopy. A 4 picosec time gate allows efficient fluorescence rejection, up to 1000X, and provides almost background-free Raman spectra with low incident laser power. The technology enables spectroscopy with better than 10X higher scattering efficiency than is possible with the NIR (785 nm and 830 nm) lasers that are conventionally used. Raman photon migration is shown to allow depth penetration. We show for the first time that Kerr-gated Raman spectra of bone tissue with blue laser excitation enables both fluorescence rejection and depth penetration.

  6. Infrared and Raman spectra of organic materials

    NASA Astrophysics Data System (ADS)

    Baratta, G. A.; Spinella, F.; Strazzulla, G.

    Ion-processing of such materials as frozen gases, graphite, aliphatic, and aromatic polymers, complex molecules, and biological compounds is studied by using vibrational spectroscopy. In particular, frozen methane, diamond, high-oriented pyrolitic graphite, microcrystalline graphite, polyethylene pristine, and ion-produced hydrogenated amorphous carbon (IPHAC) are investigated. Focus is placed on effects induced by fast ions colliding with different organic targets. It is demonstrated that IPHAC as well as other organic materials, exhibits dehydrogenation demonstrated by changes in its IR spectrum.

  7. Sensitivity of Raman spectroscopy to normal patient variability

    PubMed Central

    Vargis, Elizabeth; Byrd, Teresa; Logan, Quinisha; Khabele, Dineo; Mahadevan-Jansen, Anita

    2011-01-01

    Many groups have used Raman spectroscopy for diagnosing cervical dysplasia; however, there have been few studies looking at the effect of normal physiological variations on Raman spectra. We assess four patient variables that may affect normal Raman spectra: Race/ethnicity, body mass index (BMI), parity, and socioeconomic status. Raman spectra were acquired from a diverse population of 75 patients undergoing routine screening for cervical dysplasia. Classification of Raman spectra from patients with a normal cervix is performed using sparse multinomial logistic regression (SMLR) to determine if any of these variables has a significant effect. Results suggest that BMI and parity have the greatest impact, whereas race/ethnicity and socioeconomic status have a limited effect. Incorporating BMI and obstetric history into classification algorithms may increase sensitivity and specificity rates of disease classification using Raman spectroscopy. Studies are underway to assess the effect of these variables on disease. PMID:22112136

  8. Sensitivity of Raman spectroscopy to normal patient variability

    NASA Astrophysics Data System (ADS)

    Vargis, Elizabeth; Byrd, Teresa; Logan, Quinisha; Khabele, Dineo; Mahadevan-Jansen, Anita

    2011-11-01

    Many groups have used Raman spectroscopy for diagnosing cervical dysplasia; however, there have been few studies looking at the effect of normal physiological variations on Raman spectra. We assess four patient variables that may affect normal Raman spectra: Race/ethnicity, body mass index (BMI), parity, and socioeconomic status. Raman spectra were acquired from a diverse population of 75 patients undergoing routine screening for cervical dysplasia. Classification of Raman spectra from patients with a normal cervix is performed using sparse multinomial logistic regression (SMLR) to determine if any of these variables has a significant effect. Results suggest that BMI and parity have the greatest impact, whereas race/ethnicity and socioeconomic status have a limited effect. Incorporating BMI and obstetric history into classification algorithms may increase sensitivity and specificity rates of disease classification using Raman spectroscopy. Studies are underway to assess the effect of these variables on disease.

  9. Differentiation of lipsticks by Raman spectroscopy.

    PubMed

    Salahioglu, Fatma; Went, Michael J

    2012-11-30

    Dispersive Raman spectra have been obtained using a Raman microscope and an excitation wavelength of 632.8 nm from 69 lipsticks of various colours and from a range of manufacturers without any pre-treatment of the samples. 10% of the samples were too fluorescent to give Raman spectra. 22% of the samples gave spectra which were unique to the brand and colour within the collected sample set. The remaining 68% of the samples gave spectra which could be classified into seven distinct groups. Discrimination of red lipsticks by this technique was the most difficult. The spectra of deposited lipstick samples remained unchanged over a period of a least a year. PMID:22959771

  10. Kinetic Crystallography by Raman Microscopy

    PubMed Central

    Carey, Paul R.; Chen, Yuanyuan; Gong, Bo; Kalp, Matthew

    2010-01-01

    Raman spectra, obtained using a Raman microscope, offer an unique and incisive approach to follow interactions and reactions inside a single crystal under soak-in or soak-out conditions. The utility of this approach derives from the finding that the Raman spectra from single macromolecular crystals, under normal (non-resonance) conditions, are extremely stable, with a low “light background,” and provide ideal platforms for Raman difference spectroscopy. In turn, this allows the interrogation of sub-molecular changes in very large and complex macromolecular environments. There is often great synergy with X-ray crystallography, with the Raman spectroscopist providing crystallography colleagues with the best soak-in conditions to generate a targeted intermediate for flash freezing and X-ray analysis. On the other hand, X-ray structures at points along a reaction pathway provide invaluable benchmarks for interpreting the Raman data from populations seen by Raman to be changing in real-time. These principles will be illustrated by two reactions: The first involves a complex, branching reaction pathway underlying the inhibition of β-lactamases by clinically important pharmaceutical compounds, where different combinations of drug and enzyme function in different regions of the pathway. The second shows how temporal data can be derived for several events in the initiation step of RNA synthesis—more specifically, when one GTP molecule is joined to one ATP molecule to form a G•A dimer in the active site of a 115,000 Dalton crystalline RNA polymerase. Finally, we will summarize the extension of Raman microscopy to nucleic acid crystals and the information that has been obtained for RNA-based enzymes. PMID:20797452

  11. Quantitative NIR Raman analysis in liquid mixtures.

    PubMed

    Sato-Berrú, R Ysacc; Medina-Valtierra, Jorge; Medina-Gutiérrez, Cirilo; Frausto-Reyes, Claudio

    2004-08-01

    The capability to obtain quantitative information of a simple way from Raman spectra is a subject of considerable interest. In this work, this is demonstrated for mixtures of ethanol with water and rhodamine-6G (R-6G) with methanol, which were analyzed directly in glass vessel. The Raman intensities and a simple mathematical model have been used and applied for the analysis of liquid samples. It is starting point to generate a general expression, from the experimental spectra, as the sum of the particular expression for each pure compound allow us to obtain an expression for the mixtures which can be used for determining concentrations, from the Raman spectrum, of the mixture.

  12. Occlusal caries detection using polarized Raman spectroscopy

    NASA Astrophysics Data System (ADS)

    Ionita, I.; Bulou, A.

    2008-02-01

    The tooth enamel, because of its hydroxyapatite composition, must present a Raman spectrum with strong polarization anisotropy. Carious lesions of the enamel will produce an alteration of local symmetry and will increase much more scattering of light. This will reduce the anisotropy of the Raman spectra. Because of the difference between high sensitivity to polarization of the 959 cm -1 Raman peak in sound enamel and low sensitivity in carried enamel, Raman polarized spectroscopy could be a useful method to early detect teeth caries.

  13. Neurotoxicity associated with occupational exposure to acetone, methyl ethyl ketone, and cyclohexanone.

    PubMed

    Mitran, E; Callender, T; Orha, B; Dragnea, P; Botezatu, G

    1997-01-01

    The neurotoxic effects of acetone, methyl ethyl ketone (MEK), and cyclohexanone on Romanian workers and the impact of those effects on industry environmental standards have been controversial subjects. To scientifically substantiate the standards, a study was conducted on three groups of workers to determine the changes induced by ketone solvents on the central and peripheral nervous systems. Groups of exposed workers and matched controls were studied for each solvent: acetone, 71 exposed and 86 controls from a coin printing factory; MEK, 41 exposed and 63 controls from a cable factory; and cyclohexanone, 75 exposed and 85 controls from a furniture factory. The subjects' mean age was 36 years. The mean length of exposure was 14 years. Study participants completed a questionnaire, responded to questions about alcohol consumption, submitted to a clinical examination, submitted samples for identification of biological exposure markers, and underwent motor nerve conduction velocity and neurobehavioral tests. Results showed that workers exposed to acetone were most affected in terms of human performance and evidence of neurotoxicity, followed by workers exposed to MEK and workers exposed to cyclohexanone. On the basis of the results, it was proposed that the 6-hr permissible exposure limits for acetone, MEK, and cyclohexanone be reduced to less than 500, 200, and 150 mg/m3, respectively.

  14. Selective oxidation of cyclohexanol to cyclohexanone in the ionic liquid 1-octyl-3-methylimidazolium chloride.

    PubMed

    Chen, Long; Zhou, Teng; Chen, Lifang; Ye, Yinmei; Qi, Zhiwen; Freund, Hannsjörg; Sundmacher, Kai

    2011-09-01

    Ionic liquid (IL) 1-octyl-3-methylimidazolium chloride was found to effectively intensify cyclohexanol oxidation and resulted in 100% conversion of cyclohexanol with 100% selectivity to cyclohexanone using hydrogen peroxide as an oxidant and WO(3) as a catalyst. The effect of the IL as a solvent is discussed with the support of COSMO-RS theory.

  15. [Determination of residual cyclohexanone in disposable infusion set by gas chromatography].

    PubMed

    Zhang, Li; Wen, Yan; He, Tao; Wang, Minzhu; Xu, Pinghua

    2014-09-01

    An effective GC method was established for contents determination of the residual solvent of cyclohexanone in infusion sets for single use. The cyclohexanone in infusion sets for single use products were extracted with circular pump, using ethylalcohol as the extraction solven, then the extract followed by analysis of gas chromatography-tandem mass spectrometry. The method was simple, rapid, sensitive and accurate, Cyclohexanone showed good linearity in the range of (5.5-190.9) μg/mL, the correlation coefficient was 0.999 0, the detection limit (S/N = 3) was 0.133 μg/mL and limits of quantitation (S/N = 10) was 1.33 μg/mL. The spiked average recoveries ranged from 98% to 99%. The relative standard deviations (RSDs) of the method ranged from 1.03% to 1.98%. The method was simple, fast, sensitive and accurate, and may serve as a mass control method for residual cyclohexanone in disposable infusion sets for single use.

  16. Density functional theory studies on hydroxylamine mechanism of cyclohexanone ammoximation on titanium silicalite-1 catalyst.

    PubMed

    Chu, Chang Qing; Zhao, Hai Tao; Qi, Yan Ying; Xin, Feng

    2013-06-01

    The hydroxylamine mechanism of cyclohexanone ammoximation on defective titanium active site of titanium silicalite-1 (TS-1) was simulated using two-layer ONIOM (M062X/6-31G**:PM6) method. A new energy favorable reaction route was found, which contained two parts: (1) the catalytic oxidation of adsorbed NH3 to form hydroxylamine using the Ti-OOH as an active oxidant formed by reacting H2O2 with the defective Ti active site; (2) the subsequent noncatalytic oximation of desorbed hydroxylamine and cyclohexanone out of TS-1 pores to form cyclohexanone oxime. In the catalytic formation of hydroxylamine on the Ti active site of TS-1, the proposed mechanism of two-step single-proton transfer aided by a lattice oxygen atom bonded to Ti atom need a lower reaction energy than the mechanism proposed before. In the subsequent noncatalytic oximation of hydroxylamine and cyclohexanone, which contained two elementary reaction steps in total, the mechanisms of one-step double-proton transfer in the first elementary reaction step and the subsequent one-step three-proton transfer for the second elementary reaction step were proposed, in which the solvent water molecules played a very important role in assisting and stabilizing the proton transfer processes.

  17. One pot synthesis of cyclohexanone oxime from nitrobenzene using a bifunctional catalyst.

    PubMed

    Rubio-Marqués, Paula; Hernández-Garrido, Juan Carlos; Leyva-Pérez, Antonio; Corma, Avelino

    2014-02-18

    Cyclohexanone oxime is formed from nitrobenzene with 97% yield in a one-pot reaction catalysed by palladium and gold nanoparticles on carbon. The reaction is carried out under hydrogen at 60 °C and the overall transformation involves a multi-step catalysed mechanism from which intermediates and catalytically active species have been identified.

  18. Determination of cyclohexanol in urine and its use in environmental monitoring of cyclohexanone exposure.

    PubMed

    Ong, C N; Sia, G L; Chia, S E; Phoon, W H; Tan, K T

    1991-01-01

    A simple and sensitive method for determining urinary cyclohexanol, the main metabolite of cyclohexanone, by hydrolysis and gas chromatography (GC) with a flame ionization detector was developed. A 2-mL urine sample was hydrolyzed with 0.4 mL of concentrated HCl and followed by extracting twice with diethylether. Two microL of the filtrate was injected into the GC with a methyl silicone column. The detection limit is estimated to be 0.4 mg/L. The coefficient of variation for the procedure is 8% and 10% for the range of concentration 5 and 50 mg/L, respectively. The within-run variation was 5.4% and between-day variation was 9.67%. The method was verified with urine samples collected from workers exposed to cyclohexanone. An excellent correlation (r = 0.88) was observed between environmental cyclohexanone exposure and cyclohexanol in urine. The procedure is relatively simple and reproducible and it can be applied for occupational health measurement of cyclohexanone exposure.

  19. Single Molecule Raman Spectroscopy Under High Pressure

    NASA Astrophysics Data System (ADS)

    Fu, Yuanxi; Dlott, Dana

    2014-06-01

    Pressure effects on surface-enhanced Raman scattering spectra of Rhdoamine 6G adsorbed on silver nanoparticle surfaces was studied using a confocal Raman microscope. Colloidal silver nanoparticles were treated with Rhodamine 6G (R6G) and its isotopically substituted partner, R6G-d4. Mixed isotopomers let us identify single-molecule spectra, since multiple-molecule spectra would show vibrational transitions from both species. The nanoparticles were embedded into a poly vinyl alcohol film, and loaded into a diamond anvil cell for the high-pressure Raman scattering measurement. Argon was the pressure medium. Ambient pressure Raman scattering spectra showed few single-molecule spectra. At moderately high pressure ( 1GPa), a surprising effect was observed. The number of sites with observable spectra decreased dramatically, and most of the spectra that could be observed were due to single molecules. The effects of high pressure suppressed the multiple-molecule Raman sites, leaving only the single-molecule sites to be observed.

  20. Raman and surface-enhanced Raman scattering (SERS) studies of the thrombin-binding aptamer.

    PubMed

    Wu, Tsai-Chin; Vasudev, Milana; Dutta, Mitra; Stroscio, Michael A

    2013-06-01

    Surface-enhanced Raman scattering is used to study the Raman spectra and peak shifts the thrombin-binding aptamer (TBA) on substrates having two different geometries; one with a single stranded sequence and one with double stranded sequence. The Raman signals of the deoxyribonucleic acids on both substrates are enhanced and specific peaks of bases are identified. These results are highly reproducible and have promising applications in low cost nucleic acid detection.