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Sample records for rapid radiometric method

  1. Susceptibility testing of filamentous fungi to amphotericin B by a rapid radiometric method

    SciTech Connect

    Merz, W.G.; Fay, D.; Thumar, B.; Dixon, D.

    1984-01-01

    A rapid, radiometric method was developed to determine the susceptibility of filamentous fungi to amphotericin B. The rapid, radiometric method depended on measurement of the inhibition of /sup 24/CO/sub 2/ production in the presence of amphotericin B. Thirty isolates of filamentous fungi were tested by the rapid, radiometric method and a reference agar dilution method. There was 93% agreement between the two methods when an 80% or greater decrease in CO/sub 2/ production was used to calculate the minimal inhibitory concentration with the rapid, radiometric method. Minimal inhibitory concentrations, based on 80% decrease of CO/sub 2/ production, were achieved within 24 h of incubation with all of the fungi tested.

  2. Rapid radiometric methods to detect and differentiate Mycobacterium tuberculosis/M. bovis from other mycobacterial species

    SciTech Connect

    Siddiqi, S.H.; Hwangbo, C.C.; Silcox, V.; Good, R.C.; Snider, D.E. Jr.; Middlebrook, G.

    1984-10-01

    Rapid methods for the differentiation of Mycobacterium tuberculosis/M. bovis (TB complex) from other mycobacteria (MOTT bacilli) were developed and evaluated in a three-phase study. In the first phase, techniques for identification of Mycobacterium species were developed by using radiometric technology and BACTEC Middlebrook 7H12 liquid medium. Based on /sup 14/CO/sub 2/ evolution, characteristic growth patterns were established for 13 commonly encountered mycobacterial species. Mycobacteria belonging to the TB complex were differentiated from other mycobacteria by cellular morphology and rate of /sup 14/CO/sub 2/ evolution. For further differentiation, radiometric tests for niacin production and inhibition by Q-nitro-alpha-acetyl amino-beta-hydroxy-propiophenone (NAP) were developed. In the second phase, 100 coded specimens on Lowenstein-Jensen medium were identified as members of the TB complex, MOTT bacilli, bacteria other than mycobacteria, or ''no viable organisms'' within 3 to 12 (average 6.4) days of receipt from the Centers for Disease Control. Isolation and identification of mycobacteria from 20 simulated sputum specimens were carried out in phase III. Out of 20 sputum specimens, 16 contained culturable mycobacteria, and all of the positives were detected by the BACTEC method in an average of 7.3 days. The positive mycobacterial cultures were isolated and identified as TB complex or MOTT bacilli in an average of 12.8 days. The radiometric NAP test was found to be highly sensitive and specific for a rapid identification of TB complex, whereas the radiometric niacin test was found to have some inherent problems. Radiometric BACTEC and conventional methodologies were in complete agreement in Phase II as well as in Phase III.

  3. Survey of emissivity measurement by radiometric methods.

    PubMed

    Honner, M; Honnerová, P

    2015-02-01

    A survey of the state of the art in the field of spectral directional emissivity measurements by using radiometric methods is presented. Individual quantity types such as spectral, band, or total emissivity are defined. Principles of emissivity measurement by various methods (direct and indirect, and calorimetric and radiometric) are discussed. The paper is focused on direct radiometric methods. An overview of experimental setups is provided, including the design of individual parts such as the applied reference sources of radiation, systems of sample clamping and heating, detection systems, methods for the determination of surface temperature, and procedures for emissivity evaluation.

  4. Methods for LWIR Radiometric Calibration and Characterization

    NASA Technical Reports Server (NTRS)

    Ryan, Robert; Harrington, Gary; Howell, Dane; Pagnutti, Mary; Zanoni, Vicki

    2002-01-01

    The utility of a remote sensing system increases with its ability to retrieve surface temperature or radiance accurately. Research applications, such as sea temperature and power plant discharge, require a 0.2 C resolution or better for absolute temperature retrievals. Other applications, including agriculture water stress detection, require at least a 1 C resolution. To achieve these levels of accuracy routinely, scientists must perform laboratory and onboard calibration, as well as in-flight vicarious radiometric characterization. A common approach used for in-flight radiometric characterization incorporates a well-calibrated infrared radiometer that is mounted on a bouy and placed on a uniform water body. The radiometer monitors radiant temperature along with pressure, humidity, and temperature measurements of an associated column of atmosphere. On very still waters, however, a buoy can significantly distrub these measurements. Researchers at NASA's Stennis Space Center (SSC) have developed a novel approach of using an uncooled infrared camera mounted on a boom to quantify buoy effects. Another critical aspect of using buoy-mounted infrared radiometers is the need for extensive laboratory characterization of the instruments' radiometric sensitivity, field of view, and spectral response. Proper surface temperature retrieval also requires detailed knowledge of both the upward emission and the reflected sky emission. Recent work at SSC has demonstrated that the use of a polarization-based radiometer operating at the Brewster angle can greatly simplify temperature retrieval as well as improve overall accuracy.

  5. MODIS Radiometric Calibration Program, Methods and Results

    NASA Technical Reports Server (NTRS)

    Xiong, Xiaoxiong; Guenther, Bruce; Angal, Amit; Barnes, William; Salomonson, Vincent; Sun, Junqiang; Wenny, Brian

    2012-01-01

    As a key instrument for NASA s Earth Observing System (EOS), the Moderate Resolution Imaging Spectroradiometer (MODIS) has made significant contributions to the remote sensing community with its unprecedented amount of data products continuously generated from its observations and freely distributed to users worldwide. MODIS observations, covering spectral regions from visible (VIS) to long-wave infrared (LWIR), have enabled a broad range of research activities and applications for studies of the earth s interactive system of land, oceans, and atmosphere. In addition to extensive pre-launch measurements, developed to characterize sensor performance, MODIS carries a set of on-board calibrators (OBC) that can be used to track on-orbit changes of various sensor characteristics. Most importantly, dedicated and continuous calibration efforts have been made to maintain sensor data quality. This paper provides an overview of the MODIS calibration program, on-orbit calibration activities, methods, and performance. Key calibration results and lessons learned from the MODIS calibration effort are also presented in this paper.

  6. Site characterization for calibration of radiometric sensors using vicarious method

    NASA Astrophysics Data System (ADS)

    Parihar, Shailesh; Rathore, L. S.; Mohapatra, M.; Sharma, A. K.; Mitra, A. K.; Bhatla, R.; Singh, R. S.; Desai, Yogdeep; Srivastava, Shailendra S.

    2016-05-01

    Radiometric performances of earth observation satellite/sensors vary from ground pre-launch calibration campaign to post launch period extended to lifetime of the satellite due to launching vibrations. Therefore calibration is carried out worldwide through various methods throughout satellite lifetime. In India Indian Space Research Organization (ISRO) calibrates the sensor of Resourcesat-2 satellite by vicarious method. One of these vicarious calibration methods is the reflectance-based approach that is applied in this study for radiometric calibration of sensors on-board Resouresat-2 satellite. The results of ground-based measurement of atmospheric conditions and surface reflectance are made at Bap, Rajasthan Calibration/Validation (Cal/Val) site. Cal/Val observations at site were carried out with hyper-spectral Spectroradiometer covering spectral range of 350nm- 2500nm for radiometric characterization of the site. The Sunphotometer/Ozonometer for measuring the atmospheric parameters has also been used. The calibrated radiance is converted to absolute at-sensor spectral reflectance and Top-Of-Atmosphere (TOA) radiance. TOA radiance was computed using radiative transfer model `Second simulation of the satellite signal in the solar spectrum' (6S), which can accurately simulate the problems introduced by the presence of the atmosphere along the path from Sun to target (surface) to Sensor. The methodology for band averaged reflectance retrieval and spectral reflectance fitting process are described. Then the spectral reflectance and atmospheric parameters are put into 6S code to predict TOA radiance which compare with Resourcesat-2 radiance. Spectral signature and its reflectance ratio indicate the uniformity of the site. Thus the study proves that the selected site is suitable for vicarious calibration of sensor of Resourcesat-2. Further the study demonstrates the procedure for similar exercise for site selection for Cal/Val analysis of other satellite over India

  7. Radiometric studies with gas-liquid and thin-layer chromatography for rapid demonstration of hemin dependence and characterization of Mycobacterium haemophilum

    SciTech Connect

    Damato, J.J.; Collins, M.T.

    1984-09-01

    Eight isolates of Mycobacterium haemophilum were evaluated by radiometric methods to determine whether this test system could support the growth of these organisms as well as demonstrate their growth requirements for iron complexes such as hemin, ferric ammonium citrate, and blood. In addition, gas-liquid and thin-layer chromatography were evaluated to determine whether these procedures could further differentiate M. haemophilum from other mycobacteria. During the initial 24 to 48 h, there was no significant difference between the radiometric test broths containing iron complexes and control broths without iron supplementation. After 48 h, the test growth index readings rapidly increased, and control broth readings leveled off and declined. The mean growth index reading of the test broths after 6 days of incubation was 100 times that of the controls. The mean incubation time with supplemented 7H10 agar was 17 days. The use of radiometric media resulted in the demonstration of hemin dependence by M. haemophilum significantly earlier than with 7H10 agar. Of the three supplements studied, whole blood provided the greatest growth rate, followed by ferric ammonium citrate and hemin. When 12 species of mycobacteria other than M. haemophilum were radiometrically evaluated, no isolate demonstrated an iron complex requirement. Gas-liquid and thin-layer chromatography procedures were able to rapidly differentiate M. haemophilum from the other 12 Mycobacterium species.

  8. Interlaboratory drug susceptibility testing of Mycobacterium tuberculosis by a radiometric procedure and two conventional methods

    SciTech Connect

    Siddiqi, S.H.; Hawkins, J.E.; Laszlo, A.

    1985-12-01

    A total of 224 recent isolates of Mycobacterium tuberculosis from 163 patients selected to have multidrug resistance were tested against streptomycin (SM), isoniazid, rifampin, and ethambutol (EMB) by the rapid radiometric BACTEC method and two conventional proportion methods: the World Health Organization (WHO) method, using Lowenstein-Jensen medium; and the Veterans Administration reference laboratory for mycobacteria (VA) method, using Middlebrook 7H10 agar medium. The results were compared, focusing on the concentrations of the drugs in all three methods. Among the four drugs tested, most of the discrepancies in measured activity were observed with SM and EMB, generally because of differences in the drug concentrations used by the three methods. A 4-micrograms amount of SM in the BACTEC method was found to be slightly less active than 10 micrograms in the VA method and significantly more active than 4 micrograms of dihydrostreptomycin in the WHO method. With EMB, 2.5 micrograms in BACTEC was similar to 5 micrograms in the VA method and 2 micrograms in the WHO method, while 10 micrograms in the BACTEC method was found to be more active than 10 and 2 micrograms in the VA and WHO methods, respectively. To attain close agreement, drug concentrations used in the BACTEC method should be carefully selected when a comparison is to be made with any conventional method employed in a laboratory. Standardization of in vitro susceptibility testing is greatly needed to achieve uniformity among the test methods used to evaluate tuberculosis therapeutics.

  9. Calibration method for radiometric and wavelength calibration of a spectrometer

    NASA Astrophysics Data System (ADS)

    Granger, Edward M.

    1998-12-01

    A new calibration target or Certified Reference Material (CRM) has been designed that uses violet, orange, green and cyan dyes ont cotton paper. This paper type was chosen because it has a relatively flat spectral response from 400 nm to 700 nm and good keeping properties. These specific dyes were chosen because the difference signal between the orange, cyan, green and purple dyes have certain characteristics that then a low the calibration of an instrument. The ratio between the difference readings is a direct function of the center wavelength of a given spectral band. Therefore, the radiometric and spectral calibration can be determined simultaneously from the physical properties of the reference materials.

  10. A review of some radiometric calibration problems and methods

    NASA Technical Reports Server (NTRS)

    Slater, P. N.

    1984-01-01

    The in-flight radiometric calibration instrumentation and procedures of the Landsat Thematic Mapper and the high-resolution visible-range instruments of SPOT are illustrated with drawings and diagrams, characterized, and compared. Problems encountered in the laboratory calibration process, minimizing the temporal instability of the systems, identifying anomalies in the electronics in flight, and rechecking the calibration are examined, and it is pointed out that the stability of the calibration systems is less than that of the instruments themselves. The use of carefully measured ground-site data and atmospheric parameters in combination with radiative-transfer models for periodic calibration is recommended.

  11. Experimental methods of indoor millimeter-wave radiometric imaging for personnel concealed contraband detection

    NASA Astrophysics Data System (ADS)

    Hu, Taiyang; Xiao, Zelong; Li, Hao; Lv, Rongchuan; Lu, Xuan

    2014-11-01

    The increasingly emerging terrorism attacks and violence crimes around the world have posed severe threats to public security, so carrying out relevant research on advanced experimental methods of personnel concealed contraband detection is crucial and meaningful. All of the advantages of imaging covertly, avoidance of interference with other systems, intrinsic property of being safe to persons under screening , and the superior ability of imaging through natural or manmade obscurants, have significantly combined to enable millimeter-wave (MMW) radiometric imaging to offer great potential in personnel concealed contraband detection. Based upon the current research status of MMW radiometric imaging and urgent demands of personnel security screening, this paper mainly focuses on the experimental methods of indoor MMW radiometric imaging. The reverse radiation noise resulting from super-heterodyne receivers seriously affects the image experiments carried out at short range, so both the generation mechanism and reducing methods of this noise are investigated. Then, the benefit of sky illumination no longer exists for the indoor radiometric imaging, and this leads to the decrease in radiometric temperature contrast between target and background. In order to enhance the radiometric temperature contrast for improving indoor imaging performance, the noise illumination technique is adopted in the indoor imaging scenario. In addition, the speed and accuracy of concealed contraband detection from acquired MMW radiometric images are usually restricted to the deficiencies in traditional artificial interpretation by security inspectors, thus an automatic recognition and location algorithm by integrating improved Fuzzy C-means clustering with moment invariants is put forward. A series of original results are also presented to demonstrate the significance and validity of these methods.

  12. Comparison of diverse methods for the correction of atmospheric effects on LANDSAT and SKYLAB images. [radiometric correction in Brazil

    NASA Technical Reports Server (NTRS)

    Parada, N. D. J. (Principal Investigator); Camara, G.; Dias, L. A. V.; Mascarenhas, N. D. D.; Desouza, R. C. M.; Pereira, A. E. C.

    1982-01-01

    Earth's atmosphere reduces a sensors ability in currently discriminating targets. Using radiometric correction to reduce the atmospheric effects may improve considerably the performance of an automatic image interpreter. Several methods for radiometric correction from the open literature are compared leading to the development of an atmospheric correction system.

  13. Method to remove the effect of ambient temperature on radiometric calibration.

    PubMed

    Songtao, Chang; Yaoyu, Zhang; Zhiyuan, Sun; Min, Li

    2014-09-20

    High precision radiometric calibration is essential for infrared imaging systems, especially in scientific applications where an accurate quantitative analysis is required. Nevertheless, calibration and radiometry are usually not simultaneously performed. Hence the discrepancy of ambient temperature between calibration and actual measurement can generate significant measurement errors unless the calibration results have been properly corrected. To overcome the restriction, we studied the effect of ambient temperature on radiometric calibration, then derived the relationship between calibration results and ambient temperature considering the integration time. A novel method compensating for the impact of ambient temperature on the calibration of a cooled infrared system is proposed. Several experiments are performed, and the results indicate that the proposed method can not only ensure the accuracy of calibration but achieve calibration results under any ambient temperature and arbitrary integration time.

  14. Radiometric Method for the Research on Geomechanical Parameters of Rocks

    NASA Astrophysics Data System (ADS)

    Bonczyk, Michał; Wysocka, Małgorzata; Bukowska, Mirosława; Michalik, Bogusław; Prusek, Stanisław; Wadas, Mariusz

    2016-09-01

    Tests aimed to verify whether there is a correlation between the basic parameters characterizing the mechanical properties of rocks with the properties of ionizing radiation scattered by rocks were performed as part of the research. The positive correlation between the two examined properties would provide the basis for the development of a new method of rock testing using radiation sources or devices generating ionizing radiation. The method could be applied to carry out research in underground boreholes to determine the mechanical properties of the rock mass in situ. The study allowed the verification of the adopted assumptions for the proposed method. The verification was based on the correlation analysis of absorption coefficients of the ionizing radiation of rocks from the Upper Silesian Coal Basin with the results of the research on mechanical and physical properties.

  15. Infrared radiometric technique for rapid quantitative evaluation of heat flux distribution over large areas

    NASA Astrophysics Data System (ADS)

    Glazer, Stuart; Siebes, Georg

    1989-03-01

    This paper describes a novel approach for rapid, quantitative measurement of spatially distributed heat flux incident on a plane. The technique utilizes the spatial temperature distribution on an opaque thin film at the location of interest, as measured by an imaging infrared radiometer. Knowledge of film radiative properties, plus quantitative estimates of convection cooling permit the steady state energy balance at any location on the film sheet to be solved for the incident heat flux. Absolute accuracies on the order of 10-15 percent have been obtained in tests performed in air. The method is particularly useful for evaluation of spatial heat flux uniformity from distributed heat sources over large areas. It has recently been used in several applications at the Jet Propulsion Laboratory, including flux uniformity measurements from large distributed quartz lamp arrays used during thermal vacuum testing of several spacecraft components, and flux mapping of a low power NdYg laser beam.

  16. NASA Radiometric Characterization

    NASA Technical Reports Server (NTRS)

    Holekamp, Kara

    2006-01-01

    This viewgraph presentation reviews the characterization of radiometric data by NASA. The objective was to perform radiometric vicarious calibrations of imagery and compare with vendor-provided calibration coefficients. The approach was to use multiple, well-characterized sites. These sites are widely used by the NASA science community for radiometric characterization of airborne and space borne sensors. Using the data from these sites, the investigators performed independent characterizations with independent teams. Each team has slightly different measurement techniques and data processing methods.

  17. A new method for in-flight radiometric noise assessment: application to SPOT5

    NASA Astrophysics Data System (ADS)

    Pascal, V. éronique; Chaffaut, Francois-Xavier; Kubik, Philippe; Lebegue, Laurent; Valorge, Christophe; Jung, Mathieu

    2004-11-01

    Since SPOT1 launch in February 1986 and until SPOT5 launch in May 2002, the methods and means to insure the best quality of the images delivered to SPOT IMAGE customers have been continuously improved and updated. The quality of the corrected images is quantified through several figures of merit, including, for radiometric quality, the Signal-to-Noise Ratio (SNR). Radiometric noise is due to two separate phenomena: -column-wise noise: it represents on-board image chain performances. -line-wise noise: normalization defects (radiometric model deviations) may lead to visible "columns" on a uniform landscape. For each image, these two noises are combined in an "image noise" that quantifies the variations of the digital numbers on a uniform landscape. Different techniques can be used to assess these different noises in-flight. For SPOT1 to SPOT4, the on-board lamp is used for both normalization and SNR assessment. For SPOT5, without lamp unit, we use images acquired over the quasi-uniform landscapes of Antarctic and Greenland for normalization. However, uniformity of these landscapes is not sufficient to accurately measure the SNR. So, a new method experimented during SPOT3 in-flight commissioning phase and operational for SPOT5 is applied. It consists in using two images of the same landscape acquired simultaneously to eliminate the landscape contribution. This paper focuses on the presentation of this new method and compares its accuracy to the other methods. Finally, a comparison between flight measurements and ground measurements before launch is given.

  18. Radiometric calibration method for large aperture infrared system with broad dynamic range.

    PubMed

    Sun, Zhiyuan; Chang, Songtao; Zhu, Wei

    2015-05-20

    Infrared radiometric measurements can acquire important data for missile defense systems. When observation is carried out by ground-based infrared systems, a missile is characterized by long distance, small size, and large variation of radiance. Therefore, the infrared systems should be manufactured with a larger aperture to enhance detection ability and calibrated at a broader dynamic range to extend measurable radiance. Nevertheless, the frequently used calibration methods demand an extended-area blackbody with broad dynamic range or a huge collimator for filling the system's field stop, which would greatly increase manufacturing costs and difficulties. To overcome this restriction, a calibration method based on amendment of inner and outer calibration is proposed. First, the principles and procedures of this method are introduced. Then, a shifting strategy of infrared systems for measuring targets with large fluctuations of infrared radiance is put forward. Finally, several experiments are performed on a shortwave infrared system with Φ400  mm aperture. The results indicate that the proposed method cannot only ensure accuracy of calibration but have the advantage of low cost, low power, and high motility. Hence, it is an effective radiometric calibration method in the outfield.

  19. Radiometric cytolysis inhibition assay, a new rapid test for neutralizing antibodies to intact and trypsin-cleaved poliovirus

    SciTech Connect

    Hovi, T.; Roivainen, M.

    1989-04-01

    We have developed a new rapid test, the radiometric cytolysis inhibition assay (RACINA), for the determination of neutralizing poliovirus antibodies. HeLa cells prelabeled with /sup 51/Cr, (/sup 3/H)leucine, or, preferentially, with (/sup 3/H)uridine are used as sensitive quantitative indicators of residual infectious virus. Both suspensions and monolayer cultures of the indicator cells can be used. Neutralization of a fraction of a high-titer virus preparation can be scored after the first replication cycle at 8 to 10 h. By lowering the incubation temperature to 30/degree/C, the completion of the cytolysis due to the first replication cycle of poliovirus was delayed beyond 21 h. This makes it possible to use the RACINA, unlike the standard microneutralization assay, for measuring antibodies to trypsin-cleaved polioviruses. The RACINA was found to be as sensitive as and more reproducible than the standard microneutralization assay in the measurement of neutralizing poliovirus antibodies. The RACINA is a rapid and reliable test for neutralizing antibodies and in principle it may be applicable for quantitation of neutralizing antibodies to other cytolytic agents as well.

  20. NASA IKONOS Radiometric Characterization

    NASA Technical Reports Server (NTRS)

    Pagnutti, Mary; Frisbee, Troy; Zanoni, Vicki; Blonski, Slawek; Daehler, Erik; Grant, Brennan; Holekamp, Kara; Ryan, Robert; Sellers, Richard; Smith, Charles

    2002-01-01

    The objective of this program: Perform radiometric vicarious calibrations of IKQNOS imagery and compare with Space Imaging calibration coefficients The approach taken: utilize multiple well-characterized sites which are widely used by the NASA science community for radiometric characterization of airborne and spaceborne sensors; and to Perform independent characterizations with independent teams. Each team has slightly different measurement techniques and data processing methods.

  1. Photovoltaics radiometric issues and needs

    SciTech Connect

    Myers, D.R.

    1995-11-01

    This paper presents a summary of issues discussed at the photovoltaic radiometric measurements workshop. Topics included radiometric measurements guides, the need for well-defined goals, documentation, calibration checks, accreditation of testing laboratories and methods, the need for less expensive radiometric instrumentation, data correlations, and quality assurance.

  2. Determination of U, Pu and Am isotopes in Irish Sea sediment by a combination of AMS and radiometric methods.

    PubMed

    Srncik, M; Hrnecek, E; Steier, P; Wallner, G

    2011-04-01

    Samples from a marine sediment core from the Irish Sea (54.416 N, 3.563 W) were analyzed for the isotopic composition of uranium, plutonium and americium by a combination of radiometric methods and AMS. The radiochemical procedure consisted of a Pu separation step by anion exchange, subsequent U separation by extraction chromatography using UTEVA® and finally Am separation with TRU® Resin. Additionally to radiometric determination of these isotopes by alpha spectrometry, the separated samples were also used for the determination of (236)U/(238)U and plutonium isotope ratios by Accelerator Mass Spectrometry (AMS) at the VERA facility. PMID:21316820

  3. The Relationship between Balancing Reactions and Reaction Lifetimes: A Consideration of the Potassium-Argon Radiometric Method for Dating Minerals

    ERIC Educational Resources Information Center

    Howard, William A.

    2005-01-01

    A detailed examination of a commonly accepted practice in geology offers an example of how to stimulate critical thinking, teaches students how to read reactions, and challenges students to formulate better experiments for determining mineral ages more accurately. A demonstration of a Potassium-Argon radiometric method for dating minerals is…

  4. Photovoltaic solar radiometric measurements and evaluation

    SciTech Connect

    Myers, D.R.; Cannon, T.W.

    1996-01-01

    We describe current activities in radiometric measurements by the Photovoltaic (PV) Solar Radiometric Measurements and Evaluation Team as part of the National Renewable Energy Laboratory (NREL) PV Module and System Performance and Engineering Project. Scientific and engineering understanding of incident solar irradiance is provided through radiometric instrumentation and/or measurement methods. Recently, deployed reference broadband radiometric and meteorological instrumentation and spectral instrumentation provide the project with best-practice routine and specialized radiometric data. {copyright} {ital 1996 American Institute of Physics.}

  5. [In-Flight Radiometric Calibration for ZY-3 Satellite Multispectral Sensor by Modified Reflectance-Based Method].

    PubMed

    Han, Jie; Xie, Yong; Gu, Xing-fa; Yu, Tao; Liu, Qi-yue; Gao, Rong-jun

    2015-03-01

    Through integrating multi-spectral sensor characteristics of ZY-3 satellite, a modified reflectance-based method is proposed and used to achieve ZY-3 satellite multispectral sensor in-flight radiometric calibration. This method chooses level 1A image as data source and establishes geometric model to get an accurate observation geometric parameters at calibration site according to the information provided in image auxiliary documentation, which can reduce the influences on the calibration accuracy from image resampling and observation geometry errors. We use two-point and multi-points methods to calculate the absolute radiometric calibration coefficients of ZY-3 satellite multispectral sensor based on the large campaign at Dongying city, Shan Dong province. Compared with ZY-3 official calibration coefficients, multi-points method has higher accuracy than two-point method. Through analyzing the dispersion between each calibration point and the fitting line, we find that the residual error of water calibration site is larger than others, which of green band is approximately 67.39%. Treating water calibration site as an error, we filter it out using 95.4% confidence level as standard and recalculate the calibration coefficients with multi-points method. The final calibration coefficients show that the relative differences of the first three bands are less than 2% and the last band is less than 5%, which manifests that the proposed radiometric calibration method can obtain accurate and reliable calibration coefficients and is useful for other similar satellites in future.

  6. A simple and effective radiometric correction method to improve landscape change detection across sensors and across time

    USGS Publications Warehouse

    Chen, X.; Vierling, Lee; Deering, D.

    2005-01-01

    Satellite data offer unrivaled utility in monitoring and quantifying large scale land cover change over time. Radiometric consistency among collocated multi-temporal imagery is difficult to maintain, however, due to variations in sensor characteristics, atmospheric conditions, solar angle, and sensor view angle that can obscure surface change detection. To detect accurate landscape change using multi-temporal images, we developed a variation of the pseudoinvariant feature (PIF) normalization scheme: the temporally invariant cluster (TIC) method. Image data were acquired on June 9, 1990 (Landsat 4), June 20, 2000 (Landsat 7), and August 26, 2001 (Landsat 7) to analyze boreal forests near the Siberian city of Krasnoyarsk using the normalized difference vegetation index (NDVI), enhanced vegetation index (EVI), and reduced simple ratio (RSR). The temporally invariant cluster (TIC) centers were identified via a point density map of collocated pixel VIs from the base image and the target image, and a normalization regression line was created to intersect all TIC centers. Target image VI values were then recalculated using the regression function so that these two images could be compared using the resulting common radiometric scale. We found that EVI was very indicative of vegetation structure because of its sensitivity to shadowing effects and could thus be used to separate conifer forests from deciduous forests and grass/crop lands. Conversely, because NDVI reduced the radiometric influence of shadow, it did not allow for distinctions among these vegetation types. After normalization, correlations of NDVI and EVI with forest leaf area index (LAI) field measurements combined for 2000 and 2001 were significantly improved; the r 2 values in these regressions rose from 0.49 to 0.69 and from 0.46 to 0.61, respectively. An EVI "cancellation effect" where EVI was positively related to understory greenness but negatively related to forest canopy coverage was evident across a

  7. Correction to Method of Establishing the Absolute Radiometric Accuracy of Remote Sensing Systems While On-orbit Using Characterized Stellar Sources

    NASA Technical Reports Server (NTRS)

    Bowen, Howard S.; Cunningham, Douglas M.

    2007-01-01

    The contents include: 1) Brief history of related events; 2) Overview of original method used to establish absolute radiometric accuracy of remote sensing instruments using stellar sources; and 3) Considerations to improve the stellar calibration approach.

  8. Radiometric Dating Does Work!

    ERIC Educational Resources Information Center

    Dalrymple, G. Brent

    2000-01-01

    Discusses the accuracy of dating methods and creationist arguments that radiometric dating does not work. Explains the Manson meteorite impact and the Pierre shale, the ages of meteorites, the K-T tektites, and dating the Mount Vesuvius eruption. (Author/YDS)

  9. Critical comparison of radiometric and mass spectrometric methods for the determination of radionuclides in environmental, biological and nuclear waste samples.

    PubMed

    Hou, Xiaolin; Roos, Per

    2008-02-11

    The radiometric methods, alpha (alpha)-, beta (beta)-, gamma (gamma)-spectrometry, and mass spectrometric methods, inductively coupled plasma mass spectrometry, accelerator mass spectrometry, thermal ionization mass spectrometry, resonance ionization mass spectrometry, secondary ion mass spectrometry, and glow discharge mass spectrometry are reviewed for the determination of radionuclides. These methods are critically compared for the determination of long-lived radionuclides important for radiation protection, decommissioning of nuclear facilities, repository of nuclear waste, tracer application in the environmental and biological researches, these radionuclides include (3)H, (14)C, (36)Cl, (41)Ca, (59,63)Ni, (89,90)Sr, (99)Tc, (129)I, (135,137)Cs, (210)Pb, (226,228)Ra, (237)Np, (241)Am, and isotopes of thorium, uranium and plutonium. The application of on-line methods (flow injection/sequential injection) for separation of radionuclides and automated determination of radionuclides is also discussed.

  10. Critical comparison of radiometric and mass spectrometric methods for the determination of radionuclides in environmental, biological and nuclear waste samples.

    PubMed

    Hou, Xiaolin; Roos, Per

    2008-02-11

    The radiometric methods, alpha (alpha)-, beta (beta)-, gamma (gamma)-spectrometry, and mass spectrometric methods, inductively coupled plasma mass spectrometry, accelerator mass spectrometry, thermal ionization mass spectrometry, resonance ionization mass spectrometry, secondary ion mass spectrometry, and glow discharge mass spectrometry are reviewed for the determination of radionuclides. These methods are critically compared for the determination of long-lived radionuclides important for radiation protection, decommissioning of nuclear facilities, repository of nuclear waste, tracer application in the environmental and biological researches, these radionuclides include (3)H, (14)C, (36)Cl, (41)Ca, (59,63)Ni, (89,90)Sr, (99)Tc, (129)I, (135,137)Cs, (210)Pb, (226,228)Ra, (237)Np, (241)Am, and isotopes of thorium, uranium and plutonium. The application of on-line methods (flow injection/sequential injection) for separation of radionuclides and automated determination of radionuclides is also discussed. PMID:18215644

  11. A Method to Estimate Uncertainty in Radiometric Measurement Using the Guide to the Expression of Uncertainty in Measurement (GUM) Method; NREL (National Renewable Energy Laboratory)

    SciTech Connect

    Habte, A.; Sengupta, M.; Reda, I.

    2015-03-01

    Radiometric data with known and traceable uncertainty is essential for climate change studies to better understand cloud radiation interactions and the earth radiation budget. Further, adopting a known and traceable method of estimating uncertainty with respect to SI ensures that the uncertainty quoted for radiometric measurements can be compared based on documented methods of derivation.Therefore, statements about the overall measurement uncertainty can only be made on an individual basis, taking all relevant factors into account. This poster provides guidelines and recommended procedures for estimating the uncertainty in calibrations and measurements from radiometers. The approach follows the Guide to the Expression of Uncertainty in Measurement (GUM). derivation.Therefore, statements about the overall measurement uncertainty can only be made on an individual basis, taking all relevant factors into account. This poster provides guidelines and recommended procedures for estimating the uncertainty in calibrations and measurements from radiometers. The approach follows the Guide to the Expression of Uncertainty in Measurement (GUM).

  12. Rapid method to determine actinides and 89/90Sr in limestone and marble samples

    DOE PAGES

    Maxwell, Sherrod L.; Culligan, Brian; Hutchison, Jay B.; Utsey, Robin C.; Sudowe, Ralf; McAlister, Daniel R.

    2016-04-12

    A new method for the determination of actinides and radiostrontium in limestone and marble samples has been developed that utilizes a rapid sodium hydroxide fusion to digest the sample. Following rapid pre-concentration steps to remove sample matrix interferences, the actinides and 89/90Sr are separated using extraction chromatographic resins and measured radiometrically. The advantages of sodium hydroxide fusion versus other fusion techniques will be discussed. Lastly, this approach has a sample preparation time for limestone and marble samples of <4 hours.

  13. Simplified Vicarious Radiometric Calibration

    NASA Technical Reports Server (NTRS)

    Stanley, Thomas; Ryan, Robert; Holekamp, Kara; Pagnutti, Mary

    2010-01-01

    A measurement-based radiance estimation approach for vicarious radiometric calibration of spaceborne multispectral remote sensing systems has been developed. This simplified process eliminates the use of radiative transfer codes and reduces the number of atmospheric assumptions required to perform sensor calibrations. Like prior approaches, the simplified method involves the collection of ground truth data coincident with the overpass of the remote sensing system being calibrated, but this approach differs from the prior techniques in both the nature of the data collected and the manner in which the data are processed. In traditional vicarious radiometric calibration, ground truth data are gathered using ground-viewing spectroradiometers and one or more sun photometer( s), among other instruments, located at a ground target area. The measured data from the ground-based instruments are used in radiative transfer models to estimate the top-of-atmosphere (TOA) target radiances at the time of satellite overpass. These TOA radiances are compared with the satellite sensor readings to radiometrically calibrate the sensor. Traditional vicarious radiometric calibration methods require that an atmospheric model be defined such that the ground-based observations of solar transmission and diffuse-to-global ratios are in close agreement with the radiative transfer code estimation of these parameters. This process is labor-intensive and complex, and can be prone to errors. The errors can be compounded because of approximations in the model and inaccurate assumptions about the radiative coupling between the atmosphere and the terrain. The errors can increase the uncertainty of the TOA radiance estimates used to perform the radiometric calibration. In comparison, the simplified approach does not use atmospheric radiative transfer models and involves fewer assumptions concerning the radiative transfer properties of the atmosphere. This new technique uses two neighboring uniform

  14. TES radiometric assessment

    NASA Technical Reports Server (NTRS)

    Worden, H.; Sarkissian, E.; Bowman, K.; Fisher, B.; Rider, D.; Aumann, H. H.; Apolinski, M.; Debaca, R. C.; Gluck, S.; Madatyan, M.; McDuffie, J.; Tremblay, D.; Shephard, M.; Cady-Pereira, K.; Tobin, D.; Revercomb, H.

    2005-01-01

    TES is an infrared Fourier transform spectrometer on board the EOS-Aura spacecraft launched July 15, 2004. Improvements to the radiometric calibration and consequent assessment of radiometric accuracy have been on-going since launch.

  15. Rapid methods for identification of yeasts.

    PubMed Central

    Huppert, M; Harper, G; Sun, S H; Delanerolle, V

    1975-01-01

    Opportunistic infections by yeasts have been implicated as one of the major causes of complications in the compromised patient. Rapid recognition and identification of these yeasts is essential for patient management, but conventional liquid medium methods for completing identification tests are cumbersome and time consuming. Rapid tests have been devised based on modifications of methods commonly used in bacteriology. These rapid methods included tests for carbohydrate and nitrate assimilation, fermentation, and urease production. These were compared with several current methods for accuracy of results, for time to final identification, and for economy of time and reagents. In addition, the usual tests for pseudogerm tube formation, for production of hyphae or pseudohyphae, and for growth temperatures were included. The rapid tests achieved 96% or better accuracy compared with expected results, and 46 species of yeasts were identified in 1 to 2 days compared with the 10 to 14 days required by conventional liquid culture methods. Images PMID:1241586

  16. Detection of circulating immune complexes by Raji cell assay: comparison of flow cytometric and radiometric methods

    SciTech Connect

    Kingsmore, S.F.; Crockard, A.D.; Fay, A.C.; McNeill, T.A.; Roberts, S.D.; Thompson, J.M.

    1988-01-01

    Several flow cytometric methods for the measurement of circulating immune complexes (CIC) have recently become available. We report a Raji cell flow cytometric assay (FCMA) that uses aggregated human globulin (AHG) as primary calibrator. Technical advantages of the Raji cell flow cytometric assay are discussed, and its clinical usefulness is evaluated in a method comparison study with the widely used Raji cell immunoradiometric assay. FCMA is more precise and has greater analytic sensitivity for AHG. Diagnostic sensitivity by the flow cytometric method is superior in systemic lupus erythematosus (SLE), rheumatoid arthritis, and vasculitis patients: however, diagnostic specificity is similar for both assays, but the reference interval of FCMA is narrower. Significant correlations were found between CIC levels obtained with both methods in SLE, rheumatoid arthritis, and vasculitis patients and in longitudinal studies of two patients with cerebral SLE. The Raji cell FCMA is recommended for measurement of CIC levels to clinical laboratories with access to a flow cytometer.

  17. Comparison of thiaminase activity in fish using the radiometric and 4-nitrothiophenol colorimetric methods

    USGS Publications Warehouse

    Honeyfield, D.C.; Hanes, J.W.; Brown, L.; Kraft, C.E.; Begley, T.P.

    2010-01-01

    Thiaminase induced thiamine deficiency occurs in fish, humans, livestock and wild animals. A non-radioactive thiaminase assay was described in 2007, but a direct comparison with the radioactive 14C-thiamine method which has been in use for more than 30years has not been reported. The objective was to measure thiaminase activity in forage fish (alewife Alosa pseudoharengus, rainbow smelt Osmerus mordax, and slimy sculpin Cottus cognatus) consumed by predators that manifest thiamine deficiency using both methods. Modifications were made to the colorimetric assay to improve repeatability. Modification included a change in assay pH, enhanced sample clean-up, constant assay temperature (37??C), increase in the concentration of 4-nitrothiophenol (4NTP) and use of a spectrophotometer fitted with a 0.2cm cell. A strong relationship between the two assays was found for 51 alewife (R2=0.85), 36 smelt (R2=0.87) and 20 sculpin (R2=0.82). Thiaminase activity in the colorimetric assay was about 1000 times higher than activity measured by the radioactive method. Application of the assay to fish species from which no thiaminase activity has previously been reported resulted in no 4NTP thiaminase activity being found in bloater Coregonus hoyi, lake trout Salvelinus namaycusch, steelhead trout Oncorhynchus mykiss or Chinook salmon Oncorhynchus tshawytscha. In species previously reported to contain thiaminase, 4NTP thiaminase activity was measured in bacteria Paenibacillus thiaminolyticus, gizzard shad Dorosoma cepedianum, bracken fern Pteridium aquilinum, quagga mussel Dreissena bugensis and zebra mussels D. polymorpha. ?? 2010.

  18. Radiometric method for determining concentration of naturally occurring isotopes and device therefor

    SciTech Connect

    Yakubovich, S.L.; Gerling, V.E.; Golubnichy, V.V.; Kotsen, M.E.; Stepanov, J.N.

    1984-10-09

    The proposed method essentially consists in that a sample of a substance is placed between two scintillators in immediate contact therewith whereupon said sample is hermetically sealed. Arranged in close proximity to each scintillator is a photomultiplier tube recording ionizing ..cap alpha..- and b-radiation. A selector is utilized to select pulses corresponding to ..cap alpha..- and b-particles, and delayed coincidence circuits of a recording element separate and record b-..cap alpha.. and ..cap alpha..-..cap alpha.. cascade pairs of delayed coincidences of RaC, ThC, and AcA radionuclides. Flows are measured twice at a predetermined time interval to account for emanation build-up tendency and concentration of isotopes of radium is determined from a formula.

  19. PV Solar Radiometric Measurements

    SciTech Connect

    Myers, D.R.; Cannon, T.W.

    1997-02-01

    Radiometric measurements performed by the PV Solar Radiometric Measurements Task support NREL{close_quote}s centers for Measurements and Characterization, Performance Engineering and Reliability, and Renewable Energy Resources. The task provides characterization, measurements, testing, designs, and analysis of radiometric instrumentation and data for the performance of PV cells, modules, and systems. We describe recent characterization of the radiometric performance of pyranometers deployed for PV system testing at the NREL Outdoor Test Facility (OTF) and improvements undertaken in NREL broadband radiometer characterization. Typical measurement and calibration issues with diode array spectroradiometers used for absolute spectral measurements applied to PV performance and characterization are discussed. {copyright} {ital 1997 American Institute of Physics.}

  20. Application of a radiometric calibration method to lunar Fourier transform IR spectra by using a liquid-nitrogen-cooled high-emissivity blackbody.

    PubMed

    Schreiber, J; Blumenstock, T; Hase, F

    1997-11-01

    Since winter 1994/1995 the Moon has been used in addition to the Sun as an IR source of radiation to measure atmospheric absorption spectra with a Bruker IR Fourier transform spectrometer IFS 120M located near Kiruna, Sweden. A two-point radiometric calibration method with blackbody references was applied to lunar spectra in the long-wave detector channel to improve the accuracy of evaluation of the column amounts of different atmospheric trace gases. A new liquid-nitrogen-cooled high-emissivity blackbody without an entrance window is described that is used for this calibration method.

  1. Rapid methods and automation in dairy microbiology.

    PubMed

    Vasavada, P C

    1993-10-01

    The importance of microbiology to the dairy industry has been demonstrated by recent outbreaks of foodborne illness associated with consumption of milk and dairy products that had been contaminated with pathogenic organisms or toxins. Undesirable microorganisms constitute the primary hazard to safety, quality, and wholesomeness of milk and dairy foods. Consequently, increased emphasis has been placed on the microbiological analysis of milk and dairy products designed to evaluate quality and to ensure safety and regulatory compliance. The focus of dairy microbiology, however, remains largely on conventional methods: plate counts, most probable numbers, and dye reduction tests. These methods are slow, tedious, intensive in their requirements for material and labor, and often not suitable for assessing the quality and shelf-life of perishable dairy foods. With the exception of coliforms, Salmonella, and Staphylococcus aureus, isolation and characterization of various organisms occurring in milk and milk products are seldom a part of the routine microbiological analysis in the dairy industry. Recent emphasis on the programs based on HACCP (Hazard Analysis and Critical Control Points) for total quality management in the dairy industry and increased demand for microbiological surveillance of products, process, and environment have led to increased interest in rapid methods and automation in microbiology. Several methods for rapid detection, isolation, enumeration, and characterization of microorganisms are being adapted by the dairy industry. This presentation reviews rapid methods and automation in microbiology for microbiological analysis of milk and dairy products.

  2. Rapid method for measuring protease activity in milk using radiolabeled casein

    SciTech Connect

    Christen, G.L.

    1987-09-01

    A rapid means to detect the presence of protease activity in raw milk could be useful in predicting keeping ability of products made from that milk. A 30-min assay has been developed and compared with three other methods of detecting protease. Casein, (methyl-/sup 14/C)-methylated-alpha was purchased from a radioisotope supplier. Concentrations of substrate from 2 to 20 nCi gave counts per minute, which increased linearly when counted with the Charm analyzer. There was not a significant difference in counting times of 10, 20, or 30 min. A mixture of sodium acetate and acetic acid precipitated nonhydrolyzed substrate with an efficiency of 97%. Comparison of the (/sup 14/C) casein assay, a casein fluorescein isothiocyanate assay, trinitrobenzenesulfonic acid procedure, and the Hull procedure using protease from psychrotrophic bacteria revealed that the (/sup 14/C) casein and casein fluorescein isothiocyanate methods were roughly equivalent and that the radiometric procedure was 10 times more sensitive than the trinitrobenzenesulfonic acid assay. The radiometric procedure was approximately 10(4) times more sensitive than the Hull procedure. The (/sup 14/C) casein and casein fluorescein isothiocyanate methods were similar in time required, about 30 min, while the trinitrobenzenesulfonic acid assay and Hull method required about 1 h plus reagent preparation time. The (/sup 14/C) casein procedure was most expensive per test; the other three were cheaper and similar to each other in cost.

  3. Methods of Recording Rapid Wind Changes

    NASA Technical Reports Server (NTRS)

    Magnan, A

    1932-01-01

    The purpose of our research was to determine the rapid changes of air currents which impose varying stresses on the wings of airplanes. We attempted to express in figures the turbulence of the air, which perhaps plays some role in the behavior of airplanes in flight, as well as in the realization of certain methods of gliding flight. This is the reason which led us to conceive and develop the experimental equipment (hot-wire anemometer) described herein.

  4. A method for rapid characterization of diffusion.

    PubMed

    Song, Y-Q; Hürlimann, M D; Flaum, C

    2003-04-01

    This paper describes a method to determine molecular displacements as a function of time in just two scans: one reference scan using the Carr-Purcell-Meiboom-Gill (CPMG) sequence, a second scan using a modified CPMG sequence (KCPMG). Measurements on free diffusion in bulk fluids, and on restricted diffusion in porous rock samples are reported. This technique can also be used for rapid measurement of flow and chemical exchange. PMID:12713974

  5. Patch Antenna for Measuring the Internal Temperature of Biological Objects Using the Near-Field Microwave Radiometric Method

    NASA Astrophysics Data System (ADS)

    Ubaichin, A.; Bespalko, A.; Filatov, A.; Alexeev, E.; Zhuk, G.

    2016-01-01

    The near-field microwave antenna with central frequency of 2.23 GHz has been designed and manufactured to be used as a part of the medical microwave radiometric system. Experimental studies of the reflection coefficient in different parts of the human body were conducted using the developed antenna. The experimental studies were carried out in a group of volunteers with normal somatic growth. The results of the experiments were used to perform the analysis of the potential errors in the measurements obtained via the developed antenna.

  6. Radiometric correction procedure study

    NASA Technical Reports Server (NTRS)

    Colby, C.; Sands, R.; Murphrey, S.

    1978-01-01

    A comparison of MSS radiometric processing techniques identified as a preferred radiometric processing technique a procedure which equalizes the mean and standard deviation of detector-specific histograms of uncalibrated scene data. Evaluation of MSS calibration data demonstrated that the relationship between detector responses is essentially linear over the range of intensities typically observed in MSS data, and that the calibration wedge data possess a high degree of temporal stability. An analysis of the preferred radiometric processing technique showed that it could be incorporated into the MDP-MSS system without a major redesign of the system, and with minimal impact on system throughput.

  7. Rapid Column Extraction method for SoilRapid Column Extraction method for Soil

    SciTech Connect

    Maxwell, Sherrod, L. III; Culligan, Brian K.

    2005-11-07

    The analysis of actinides in environmental soil and sediment samples is very important for environmental monitoring as well as for emergency preparedness. A new, rapid actinide separation method has been developed and implemented that provides total dissolution of large soil samples, high chemical recoveries and effective removal of matrix interferences. This method uses stacked TEVA Resin{reg_sign}, TRU Resin{reg_sign} and DGA-Resin{reg_sign} cartridges from Eichrom Technologies (Darien, IL, USA) that allows the rapid separation of plutonium (Pu) neptunium (Np), uranium (U), americium (Am), and curium (Cm) using a single multi-stage column combined with alpha spectrometry. The method combines a rapid fusion step for total dissolution to dissolve refractory analytes and matrix removal using cerium fluoride precipitation to remove the difficult soil matrix. By using vacuum box cartridge technology with rapid flow rates, sample preparation time is minimized.

  8. NASA IKONOS Radiometric Characterization

    NASA Technical Reports Server (NTRS)

    Pagnutti, Mary; Ryan, Robert E.; Kelly, Michelle; Holekamp, Kara; Daehler, Erik; Zanoni, Vicki; Schiller, Stephen; Thome, Kurtis

    2002-01-01

    NASA acquired imagery from the IKONOS satellite as part of its Scientific Data Purchase (SDP) program, which purchases scientific data sets from commercial sources. This viewgraph presentation describes the IKONOS satellite and its sensors, and then gives an overview of characterization efforts undertaken by NASA in cooperation with other government agencies. The characterization included relative radiometric correction, absolute radiometric characterization of data from Lunar Lake Playa, Nevada, and calibration of data from Stennis Space Center, Mississippi.

  9. Intracellular fate of Mycobacterium avium subspecies paratuberculosis in monocytes from normal and infected, interferon-responsive cows as determined by a radiometric method.

    PubMed

    Zhao, B Y; Czuprynski, C J; Collins, M T

    1999-01-01

    The ability of Mycobacterium avium subsp. paratuberculosis to survive in bovine monocytes was studied using radiometric (BACTEC) culture, standard plate counting and microscopic counting of acid-fast stained monocyte monolayers. Results of microscopic counts sharply contrasted with results of viable counts determined both by plate counting and radiometric counting. We observed an early phase (the first 6 d after in vitro infection) of intracellular bacillary growth, followed by a later phase of mycobacteriostasis or killing (up to 12 d after in vitro infection) in monocytes from non-infected cows. The data suggest that multiplication and death of M. avium subsp. paratuberculosis occur simultaneously in bovine monocytes infected in vitro. Using the BACTEC method, we compared the ability of bovine monocytes from normal cows and cows infected with M. avium subsp. paratuberculosis and showing evidence of a strong Thl-like cellular immune response to ingest and inhibit the intracellular growth of M. avium subsp. paratuberculosis. There was a trend toward greater phagocytosis and faster killing of Mycobacterium avium subsp. paratuberculosis by monocytes from the infected, immune responder cows. However, the observed numbers of viable M. avium subsp. paratuberculosis at each time after monocyte infection were not significantly different between normal and infected cows.

  10. Rapid Column Extraction Methods for Urine

    SciTech Connect

    Maxwell, S.L. III

    2000-06-09

    A new fecal analysis method that dissolves plutonium oxide was developed at the Westinghouse Savannah River Site. Diphonix Resin (Eichrom Industries), is used to pre-concentrate the actinides from digested fecal samples. A rapid microwave digestion technique is used to remove the actinides from the Diphonix Resin, which effectively extracts plutonium and americium from acidic solutions containing hydrofluoric acid. After resin digestion, the plutonium and americium are recovered in a small volume of nitric acid that is loaded onto small extraction chromatography columns, TEVA Resin and TRU Resin (Eichrom Industries). The method enables complete dissolution of plutonium oxide and provides high recovery of plutonium and americium with good removal of thorium isotopes such as thorium-228.

  11. Simple rapid method for gene transfer

    SciTech Connect

    Cockburn, A.F.; Meier, H.

    1990-01-30

    The object of the present invention is to provide methods for gene transfer that reduce or eliminate cellular pretreatment steps, e.g., the removal of cell wall by chemical or enzymatic methods, is rapid and can be practiced without the need of additional expensive equipment. Cells, embryos or tissues selected for genetic manipulation are suspended in an Eppendorf tube in an aliquot of the desired genetic material to be transferred to which the resulting mixture is added and is agitated by vortexing from about 30 to about 90 seconds. The cells, embryos or tissue are sedimented and the DNA supernatant removed. After sedimentation, the injected material is resuspended in or on a growth medium to assay for expression.

  12. Effectiveness and cost of rapid and conventional laboratory methods for Mycobacterium tuberculosis screening.

    PubMed Central

    Heymann, S J; Brewer, T F; Ettling, M

    1997-01-01

    OBJECTIVE: Because delay in the diagnosis of tuberculosis (TB) contributes to the spread of disease and the associated mortality risk, the authors examined the effectiveness and cost of recent advances in methods of diagnosing TB and testing for drug susceptibility, comparing these rapid methods to traditional approaches. METHODS: Decision analysis was used to compare newer rapid and older nonrapid methods for diagnosing TB and testing for drug susceptibility. The average time to diagnosis, average time to treatment, average mortality, and cost of caring for patients evaluated for TB were compared. RESULTS: Using a combination of solid medium and broth cultures, nucleic acid probes for identification, and radiometric broth drug susceptibility testing would lead to diagnosis on average 15 days faster and to appropriate therapy on average five days sooner than methods currently employed by many U.S. laboratories. The average mortality would drop by five patients per 1000 patients evaluated (31%) and the average cost per patient would drop by $272 (18%). CONCLUSIONS: In this era of cost containment, it is important to incorporate test sensitivity and specificity when evaluating technologies. Tests with higher unit costs may lead to lower medical expenditures when diagnostic accuracy and speed are improved. U.S. laboratories should employ available rapid techniques for the diagnosis of TB. PMID:10822480

  13. Results of magnetic HGI and radiometric surveys in W. Canada

    SciTech Connect

    LeSchack, L.A.

    1997-05-19

    This article presents four case histories in which ground-based magnetic horizontal gradient intensity (HGI) and radiometric surveys were used in Western Canada for cost-effective geochemical exploration for hydrocarbons. The authors has developed these two surface exploration techniques from published studies and adapted them for use on the prairies the past 7 years. These surveys are used in conjunction with the usual geologic and seismic studies for: (1) evaluating prospects and land; (2) verifying seismic anomalies and inexpensively locating areas for conducting expensive 3D seismic surveys. Occasionally, as in two of the case histories discussed, these surveys were used successfully as stand-alone exploration methods where seismic exploration is not effective. The HGI and radiometric surveys measure, by geophysical methods, those effects associated with geochemical alterations due to vertical microseepage of hydrocarbons. The total cost, including permitting, data acquisition, data processing, and interpretation of the combination HGI and radiometric surveys is about 15% the total cost of a 3D seismic survey. Because of this, the author finds them an attractive and rapid survey adjunct to traditional exploration. They substantially reduce finding costs and significantly raise the probability of financial success.

  14. Small satellite radiometric measurements

    SciTech Connect

    Weber, P.G.

    1991-01-01

    A critical need for the Mission to Planet Earth is to provide continuous, well-calibrated radiometric data for the radiation budget. This paper describes a new, compact, flexible radiometer which will provide both spectrally integrated data and data in selected spectral bands. The radiometer design is suitable for use on small satellites, aircraft, or remotely piloted vehicles (RPVs). 12 refs., 2 figs.

  15. Relative radiometric calibration of LANDSAT TM reflective bands

    NASA Technical Reports Server (NTRS)

    Barker, J. L.

    1984-01-01

    A common scientific methodology and terminology is outlined for characterizing the radiometry of both TM sensors. The magnitude of the most significant sources of radiometric variability are discussed and methods are recommended for achieving the exceptional potential inherent in the radiometric precision and accuracy of the TM sensors.

  16. A method for sensible heat flux model parameterization based on radiometric surface temperature and environmental factors without involving the parameter KB-1

    NASA Astrophysics Data System (ADS)

    Zhuang, Qifeng; Wu, Bingfang; Yan, Nana; Zhu, Weiwei; Xing, Qiang

    2016-05-01

    Sensible heat flux is a key component of land-atmosphere interaction. In most parameterizations it is calculated with surface-air temperature differences and total aerodynamic resistance to heat transfer (Rae) that is related to the KB-1 parameter. Suitable values are hard to obtain since KB-1 is related both to canopy characteristics and environmental conditions. In this paper, a parameterize method for sensible heat flux over vegetated surfaces (maize field and grass land in the Heihe river basin of northwest China) was proposed based on the radiometric surface temperature, surface resistance (Rs) and vapor pressures (saturated and actual) at the surface and the atmosphere above the canopy. A biophysics-based surface resistance model was revised to compute surface resistance with several environmental factors. The total aerodynamic resistance to heat transfer is directly calculated by combining the biophysics-based surface resistance and vapor pressures. One merit of this method is that the calculation of KB-1 can be avoided. The method provides a new way to estimate sensible heat flux over vegetated surfaces and its performance compares well to the LAS measured sensible heat and other empirical or semi-empirical KB-1 based estimations.

  17. Radiometric studies of Mycobacterium lepraemurium.

    PubMed

    Camargo, E E; Larson, S M; Tepper, B S; Wagner, H N

    1976-01-01

    The radiometric method has been applied for studying the metabolism of M. lepraemurium and the conditions which might force or inhibit its metabolic activity in vitro. These organisms assimilate and oxidize (U-14C) glycerol, and (U-14C) acetate, but are unable to oxidize (U-14C) glucose, (U-14C) pyruvate, (U-14C) glycine and 14C-formate. When incubated at 30 degrees C M. lepraemurium oxidizes (U-14C) acetate to 14CO2 faster than 37 degrees C. The smae effect was observed with increasing concentrations of polysorbate 80 (Tween 80), or the 14C-substrate. No change in metabolic rate was observed when the organisms were kept at -20 degrees C for 12 days. Although tried several times, it was not possible to demonstrate any "inhibitors" of bacterial metabolism in the reaction system. The radiometric method seems to be an important tool for studying metabolic pathways and the influence of physical and biochemical factors on the metabolism of M. lepraemurium in vitro.

  18. Methods and compositions for rapid thermal cycling

    SciTech Connect

    Beer, Neil Reginald; Benett, William J.; Frank, James M.; Deotte, Joshua R.; Spadaccini, Christopher

    2015-10-27

    The rapid thermal cycling of a material is targeted. A microfluidic heat exchanger with an internal porous medium is coupled to tanks containing cold fluid and hot fluid. Fluid flows alternately from the cold tank and the hot tank into the porous medium, cooling and heating samples contained in the microfluidic heat exchanger's sample wells. A valve may be coupled to the tanks and a pump, and switching the position of the valve may switch the source and direction of fluid flowing through the porous medium. A controller may control the switching of valve positions based on the temperature of the samples and determined temperature thresholds. A sample tray for containing samples to be thermally cycled may be used in conjunction with the thermal cycling system. A surface or internal electrical heater may aid in heating the samples, or may replace the necessity for the hot tank.

  19. Radiometric sounding system

    SciTech Connect

    Whiteman, C.D.; Anderson, G.A.; Alzheimer, J.M.; Shaw, W.J.

    1995-04-01

    Vertical profiles of solar and terrestrial radiative fluxes are key research needs for global climate change research. These fluxes are expected to change as radiatively active trace gases are emitted to the earth`s atmosphere as a consequence of energy production and industrial and other human activities. Models suggest that changes in the concentration of such gases will lead to radiative flux divergences that will produce global warming of the earth`s atmosphere. Direct measurements of the vertical variation of solar and terrestrial radiative fluxes that lead to these flux divergences have been largely unavailable because of the expense of making such measurements from airplanes. These measurements are needed to improve existing atmospheric radiative transfer models, especially under the cloudy conditions where the models have not been adequately tested. A tethered-balloon-borne Radiometric Sounding System has been developed at Pacific Northwest Laboratory to provide an inexpensive means of making routine vertical soundings of radiative fluxes in the earth`s atmospheric boundary layer to altitudes up to 1500 m above ground level. Such vertical soundings would supplement measurements being made from aircraft and towers. The key technical challenge in the design of the Radiometric Sounding System is to develop a means of keeping the radiometers horizontal while the balloon ascends and descends in a turbulent atmospheric environment. This problem has been addressed by stabilizing a triangular radiometer-carrying platform that is carried on the tetherline of a balloon sounding system. The platform, carried 30 m or more below the balloon to reduce the balloon`s effect on the radiometric measurements, is leveled by two automatic control loops that activate motors, gears and pulleys when the platform is off-level. The sensitivity of the automatic control loops to oscillatory motions of various frequencies and amplitudes can be adjusted using filters.

  20. Kernel MAD Algorithm for Relative Radiometric Normalization

    NASA Astrophysics Data System (ADS)

    Bai, Yang; Tang, Ping; Hu, Changmiao

    2016-06-01

    The multivariate alteration detection (MAD) algorithm is commonly used in relative radiometric normalization. This algorithm is based on linear canonical correlation analysis (CCA) which can analyze only linear relationships among bands. Therefore, we first introduce a new version of MAD in this study based on the established method known as kernel canonical correlation analysis (KCCA). The proposed method effectively extracts the non-linear and complex relationships among variables. We then conduct relative radiometric normalization experiments on both the linear CCA and KCCA version of the MAD algorithm with the use of Landsat-8 data of Beijing, China, and Gaofen-1(GF-1) data derived from South China. Finally, we analyze the difference between the two methods. Results show that the KCCA-based MAD can be satisfactorily applied to relative radiometric normalization, this algorithm can well describe the nonlinear relationship between multi-temporal images. This work is the first attempt to apply a KCCA-based MAD algorithm to relative radiometric normalization.

  1. Method for rapid isolation of sensitive mutants

    DOEpatents

    Freyer, J.P.

    1997-07-29

    Sensitive mammalian cell mutants are rapidly isolated using flow cytometry. A first population of clonal spheroids is established to contain both normal and mutant cells. The population may be naturally occurring or may arise from mutagenized cells. The first population is then flow sorted by size to obtain a second population of clonal spheroids of a first uniform size. The second population is then exposed to a DNA-damaging agent that is being investigated. The exposed second population is placed in a growth medium to form a third population of clonal spheroids comprising spheroids of increased size from the mammalian cells that are resistant to the DNA-damaging agent and spheroids of substantially the first uniform size formed from the mammalian cells that are sensitive to the DNA-damaging agent. The third population is not flow sorted to differentiate the spheroids formed from resistant mammalian cells from spheroids formed from sensitive mammalian cells. The spheroids formed from sensitive mammalian cells are now treated to recover viable sensitive cells from which a sensitive cell line can be cloned. 15 figs.

  2. Method for rapid isolation of sensitive mutants

    DOEpatents

    Freyer, James P.

    1997-01-01

    Sensitive mammalian cell mutants are rapidly isolated using flow cytometry. A first population of clonal spheroids is established to contain both normal and mutant cells. The population may be naturally occurring or may arise from mutagenized cells. The first population is then flow sorted by size to obtain a second population of clonal spheroids of a first uniform size. The second population is then exposed to a DNA-damaging agent that is being investigated. The exposed second population is placed in a growth medium to form a third population of clonal spheroids comprising spheroids of increased size from the mammalian cells that are resistant to the DNA-damaging agent and spheroids of substantially the first uniform size formed from the mammalian cells that are sensitive to the DNA-damaging agent. The third population is not flow sorted to differentiate the spheroids formed from resistant mammalian cells from spheroids formed from sensitive mammalian cells. The spheroids formed from sensitive mammalian cells are now treated to recover viable sensitive cells from which a sensitive cell line can be cloned.

  3. Rapid vegetative propagation method for carob

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Many fruit species are propagated by vegetative methods such as budding, grafting, cutting, suckering, layering etc. to avoid heterozygosity. Carob trees (Ceratonia siliqua L.) are of highly economical value and it is among the most difficult-to-propagate fruit species. In this study, air-layering p...

  4. Colorimetric method for rapid determination of bacteriuria.

    PubMed

    Wallis, C; Melnick, J L; Longoria, C J

    1981-09-01

    An inexpensive, rapid, and simple colorimetric test for detection of bacteriuria is described. This test does not require bacterial growth and has the marked advantage of being able to quantify bacteria, even when the organisms are present in the urine of bacteriuric patients who are being treated with antibiotics. The test is carried out with 1 ml of urine, which is processed through a 10-mm-diameter filter than entraps the bacteria on its surface. Safranine dye is passed through the filter to stain the bacteria and the filter fibers. A decolorizer, which removes the dye from the filter fibers but not from the bacteria, is then passed through the filter. If there are greater than or equal to 10(5) colony-forming units of bacteria per ml in the sample, the 10-mm filter disk manifests a pink to red color. If there are less than 10(5)colony-forming units of bacteria per ml, the filter disk remains white or becomes slightly yellow. The entire procedure has been adapted to a semiautomated instrument and the time required per test is less than 1 min. The results obtained on the test card are a permanent record to be filled with the patient's chart. The bacteria can be quickly classified as gram positive or gram negative by selective staining of a second milliliter of urine on the filter. Of 441 urine specimens tested, 430 (98%) were correctly classified as containing more or less than 10(5) colony-forming units per ml. A total of 62 urine specimens were positive by bacterial plating (greater than or equal to 10(5) colony-forming units per ml), and 59 were positive by the colorimetric test. Eight false-positives (colorimetric test positive, plate counts less than 10(5)) were encountered in patients (bacteriuric) being prescribed antibiotics. Removal of the antibiotics from these urine specimens, with subsequent replating of the samples, indicated the presence of greater than or equal to 10(5) colony-forming units of bacteria per ml in three representative cases tested

  5. COMPARISON BETWEEN ELLMAN AND RADIOMETRIC METHODS FOR ASSESSING CHOLINESTERASE (CHE) INHIBITION IN RATS TREATED WITH N-METHYL CARBAMATE INSECTICIDES.

    EPA Science Inventory

    Carbamylated ChE is unstable and readily reactivates. This reactivation, promoted by increasing temperature and dilution, could have an impact on ex vivo ChE assays by decreasing apparent ChE inhibition. To assess the best method for measuring ChE inhibition in brain and RBCs f...

  6. Method and system rapid piece handling

    DOEpatents

    Spletzer, Barry L.

    1996-01-01

    The advent of high-speed fabric cutters has made necessary the development of automated techniques for the collection and sorting of garment pieces into collated piles of pieces ready for assembly. The present invention enables a new method for such handling and sorting of garment parts, and to apparatus capable of carrying out this new method. The common thread is the application of computer-controlled shuttling bins, capable of picking up a desired piece of fabric and dropping it in collated order for assembly. Such apparatus with appropriate computer control relieves the bottleneck now presented by the sorting and collation procedure, thus greatly increasing the overall rate at which garments can be assembled.

  7. An alternative radiometric method for calculating the sedimentation rates: application to an intertidal region (SW of Spain).

    PubMed

    Ligero, R A; Casas-Ruiz, M; Barrera, M; Barbero, L; Meléndez, M J

    2010-09-01

    A new method using the inventory determined for the activity of the radionuclide (137)Cs, coming from global radioactive fallout has been utilised to calculate the sedimentation rates. The method has been applied in a wide intertidal region in the Bay of Cádiz Natural Park (SW Spain). The sedimentation rates estimated by the (137)Cs inventory method ranged from 0.26 cm/year to 1.72 cm/year. The average value of the sedimentation rate obtained is 0.59 cm/year, and this rate has been compared with those resulting from the application of the (210)Pb dating technique. A good agreement between the two procedures has been found. From the study carried out, it has been possible for the first time, to draw a map of sedimentation rates for this zone where numerous physico-chemical, oceanographic and ecological studies converge, since it is situated in a region of great environmental interest. This area, which is representative of common environmental coastal scenarios, is particularly sensitive to perturbations related to climate change, and the results of the study will allow to make short and medium term evaluations of this change.

  8. Dating human skeletal remains using a radiometric method: biogenic versus diagenetic 90Sr and 210Pb in vertebrae.

    PubMed

    Schrag, Bettina; Uldin, Tanya; Mangin, Patrice; Froidevaux, Pascal

    2012-07-10

    In forensic science, there is a strong interest in determining the post-mortem interval (PMI) of human skeletal remains up to 50 years after death. Currently, there are no reliable methods to resolve PMI, the determination of which relies almost exclusively on the experience of the investigating expert. Here we measured (90)Sr and (210)Pb ((210)Po) incorporated into bones through a biogenic process as indicators of the time elapsed since death. We hypothesised that the activity of radionuclides incorporated into trabecular bone will more accurately match the activity in the environment and the food chain at the time of death than the activity in cortical bone because of a higher remodelling rate. We found that determining (90)Sr can yield reliable PMI estimates as long as a calibration curve exists for (90)Sr covering the studied area and the last 50 years. We also found that adding the activity of (210)Po, a proxy for naturally occurring (210)Pb incorporated through ingestion, to the (90)Sr dating increases the reliability of the PMI value. Our results also show that trabecular bone is subject to both (90)Sr and (210)Po diagenesis. Accordingly, we used a solubility profile method to determine the biogenic radionuclide only, and we are proposing a new method of bone decontamination to be used prior to (90)Sr and (210)Pb dating.

  9. Method for large and rapid terahertz imaging

    DOEpatents

    Williams, Gwyn P.; Neil, George R.

    2013-01-29

    A method of large-scale active THz imaging using a combination of a compact high power THz source (>1 watt), an optional optical system, and a camera for the detection of reflected or transmitted THz radiation, without the need for the burdensome power source or detector cooling systems required by similar prior art such devices. With such a system, one is able to image, for example, a whole person in seconds or less, whereas at present, using low power sources and scanning techniques, it takes several minutes or even hours to image even a 1 cm.times.1 cm area of skin.

  10. Rapid method for SV40 titration.

    PubMed

    Drayman, Nir; Kler, Slava; Ben-nun-Shaul, Orly; Oppenheim, Ariella

    2010-03-01

    SV40 titer is determined traditionally by the conventional plaque assay. Plaques appear after several rounds of infection and the assay takes around two weeks, which may delay research. A simpler assay was developed, based on detection of T-antigen in the infected cells by flow cytometry. Cells grown in 6-well plates are infected with serial dilutions of the viral stock, harvested 48h post-infection, stained and analyzed for T-antigen using a flow cytometer. The viral titer is calculated based on the percentage of T-antigen positive cells. The procedure is accomplished in 2 days. Unexpectedly we found that titers on different permissive African Green Monkey kidney cell lines were consistently different, suggesting variable susceptibility to SV40 infection. The method described, optimized for SV40 titration, may be adapted readily to other viruses.

  11. Radiometric Characterization of IKONOS Multispectral Imagery

    NASA Technical Reports Server (NTRS)

    Pagnutti, Mary; Ryan, Robert E.; Kelly, Michelle; Holekamp, Kara; Zanoni, Vicki; Thome, Kurtis; Schiller, Stephen

    2002-01-01

    A radiometric characterization of Space Imaging's IKONOS 4-m multispectral imagery has been performed by a NASA funded team from the John C. Stennis Space Center (SSC), the University of Arizona Remote Sensing Group (UARSG), and South Dakota State University (SDSU). Both intrinsic radiometry and the effects of Space Imaging processing on radiometry were investigated. Relative radiometry was examined with uniform Antarctic and Saharan sites. Absolute radiometric calibration was performed using reflectance-based vicarious calibration methods on several uniform sites imaged by IKONOS, coincident with ground-based surface and atmospheric measurements. Ground-based data and the IKONOS spectral response function served as input to radiative transfer codes to generate a Top-of-Atmosphere radiance estimate. Calibration coefficients derived from each vicarious calibration were combined to generate an IKONOS radiometric gain coefficient for each multispectral band assuming a linear response over the full dynamic range of the instrument. These calibration coefficients were made available to Space Imaging, which subsequently adopted them by updating its initial set of calibration coefficients. IKONOS imagery procured through the NASA Scientific Data Purchase program is processed with or without a Modulation Transfer Function Compensation kernel. The radiometric effects of this kernel on various scene types was also investigated. All imagery characterized was procured through the NASA Scientific Data Purchase program.

  12. [Laser-based radiometric calibration].

    PubMed

    Li, Zhi-gang; Zheng, Yu-quan

    2014-12-01

    Increasingly higher demands are put forward to spectral radiometric calibration accuracy and the development of new tunable laser based spectral radiometric calibration technology is promoted, along with the development of studies of terrestrial remote sensing, aeronautical and astronautical remote sensing, plasma physics, quantitative spectroscopy, etc. Internationally a number of national metrology scientific research institutes have built tunable laser based spectral radiometric calibration facilities in succession, which are traceable to cryogenic radiometers and have low uncertainties for spectral responsivity calibration and characterization of detectors and remote sensing instruments in the UK, the USA, Germany, etc. Among them, the facility for spectral irradiance and radiance responsivity calibrations using uniform sources (SIRCCUS) at the National Institute of Standards and Technology (NIST) in the USA and the Tunable Lasers in Photometry (TULIP) facility at the Physikalisch-Technische Bundesanstalt (PTB) in Germany have more representatives. Compared with lamp-monochromator systems, laser based spectral radiometric calibrations have many advantages, such as narrow spectral bandwidth, high wavelength accuracy, low calibration uncertainty and so on for radiometric calibration applications. In this paper, the development of laser-based spectral radiometric calibration and structures and performances of laser-based radiometric calibration facilities represented by the National Physical Laboratory (NPL) in the UK, NIST and PTB are presented, technical advantages of laser-based spectral radiometric calibration are analyzed, and applications of this technology are further discussed. Laser-based spectral radiometric calibration facilities can be widely used in important system-level radiometric calibration measurements with high accuracy, including radiance temperature, radiance and irradiance calibrations for space remote sensing instruments, and promote the

  13. [Laser-based radiometric calibration].

    PubMed

    Li, Zhi-gang; Zheng, Yu-quan

    2014-12-01

    Increasingly higher demands are put forward to spectral radiometric calibration accuracy and the development of new tunable laser based spectral radiometric calibration technology is promoted, along with the development of studies of terrestrial remote sensing, aeronautical and astronautical remote sensing, plasma physics, quantitative spectroscopy, etc. Internationally a number of national metrology scientific research institutes have built tunable laser based spectral radiometric calibration facilities in succession, which are traceable to cryogenic radiometers and have low uncertainties for spectral responsivity calibration and characterization of detectors and remote sensing instruments in the UK, the USA, Germany, etc. Among them, the facility for spectral irradiance and radiance responsivity calibrations using uniform sources (SIRCCUS) at the National Institute of Standards and Technology (NIST) in the USA and the Tunable Lasers in Photometry (TULIP) facility at the Physikalisch-Technische Bundesanstalt (PTB) in Germany have more representatives. Compared with lamp-monochromator systems, laser based spectral radiometric calibrations have many advantages, such as narrow spectral bandwidth, high wavelength accuracy, low calibration uncertainty and so on for radiometric calibration applications. In this paper, the development of laser-based spectral radiometric calibration and structures and performances of laser-based radiometric calibration facilities represented by the National Physical Laboratory (NPL) in the UK, NIST and PTB are presented, technical advantages of laser-based spectral radiometric calibration are analyzed, and applications of this technology are further discussed. Laser-based spectral radiometric calibration facilities can be widely used in important system-level radiometric calibration measurements with high accuracy, including radiance temperature, radiance and irradiance calibrations for space remote sensing instruments, and promote the

  14. An alternative method for the estimation of sedimentation rates using radiometric measurements in an intertidal region (sw of spain)

    NASA Astrophysics Data System (ADS)

    Ligero, Rufino; Casas-Ruiz, Melquiades; Barrera, Manuel; Barbero, Luis

    2010-05-01

    The techniques for the direct measurement of the sedimentation rate are reliable but slow and imprecise, given that the time intervals of measurement cannot be very long. Consequently it is an extremely laborious task to obtain a representative map of the sedimentation rates and such maps are available for very few zones. However, for most environmental studies, it is very important to know the sedimentation rates. The high degree of accuracy of the gamma spectrometric techniques together with the application of the model describes in this work, has allowed the determination of the sedimentation rates in a wide spatial area such of the Bay of Cadiz to be obtained with precision and consuming considerably less time in comparison to the traditional techniques. Even so, the experimental conditions required for the sample cores are fairly restrictive, and although the radiological method provides a quantitative advance in measurement, the experimental difficulty in the execution of the study is not greatly diminished. For this reason, a second model has been derived based on the measurement of the inventory, which offers economies in time and financial cost, and which allows the sedimentation rate in a region to be determined with satisfactory accuracy. Furthermore, it has been shown that the application of this model requires a precise determination of 137Cs inventories. The sedimentation rates estimated by the 137Cs inventory method ranged from 0.26 cm/year to 1.72 cm/year. The average value of the sedimentation rate obtained is 0.59 cm/year, and this rate has been compared with those resulting from the application of the 210Pb dating technique. A good agreement between the two procedures has been found. From the study carried out, it has been possible for the first time, to draw a map of sedimentation rates for this zone where numerous physical-chemical, oceanographic and ecological studies converge, since it is situated in a region of great environmental interest

  15. Application of non-radiometric methods to the determination of plutonium. Literature review conducted for the Buried Waste Integrated Program

    SciTech Connect

    Edelson, M.C.

    1992-03-05

    This literature review was motivated by discussions that took place during a review of contamination control technologies proposed for INEL (buried waste). It should be a useful tool in identifying non-radiation measurement techniques for Pu and Am such as ICP-MS, which should fulfill the following criteria: apparatus must be field deployable; up to 100 samples per day; and lower levels of detection and required time must be listed. The sensitivity of ICP and RIMS is compared against that needed for contamination monitoring at INEL. Only Pu-241, with a required detection limit of 400 ppt, would challenge the sensitivity of ICP-MS; Pu-238 would be easily determined. The need to determine Pu-238 and Am-241 in the presence of U-238 and Pu-241 seems to preclude the possibility of using laser ablation ICP-MS for Pu monitoring. ICP-AES and -LEAFS methods may not have enough sensitivity to determine Pu-238 at 2 ppb level with confidence, but RIMS (resonance ionization mass spectroscopy) should be adequate. 47 refs, figs.

  16. Predictions for rapid methods and automation in food microbiology.

    PubMed

    Fung, Daniel Y C

    2002-01-01

    A discussion is presented on the present status of rapid methods and automation in microbiology. Predictions are also presented for development in the following areas: viable cell counts; real-time monitoring of hygiene; polymerase chain reaction, ribotyping, and genetic tests in food laboratories; automated enzyme-linked immunosorbent assay and immunotests; rapid dipstick technology; biosensors for Hazard Analysis Critical Control Point programs; instant detection of target pathogens by computer-generated matrix; effective separation and concentration for rapid identification of target cells; microbiological alert systems in food packages; and rapid alert kits for detecting pathogens at home.

  17. Relative Radiometric Calibration of LANDSAT TM Reflective Bands

    NASA Technical Reports Server (NTRS)

    Barker, J. L.

    1985-01-01

    Results and recommendations pertaining to the characterization of the relative radiometric calibration of the protoflight thematic mapper (TM/PF) on the LANDSAT-4 satellite are presented. Some preliminary pre-launch and in-orbit results are also included from the flight model (TM/F) on LANDSAT-5. A common scientific methodology and terminology is outlined for characterizing the radiometry of both TM sensors. The magnitude of the most significant sources of radiometric variability are discussed and methods are recommended for achieving the exceptional potential inherent in the radiometric precision and accuracy of the sensors.

  18. Use of a novel radiometric method to assess the inhibitory effect of donepezil on acetylcholinesterase activity in minimally diluted tissue samples

    PubMed Central

    Kikuchi, Tatsuya; Okamura, Toshimitsu; Arai, Takuya; Obata, Takayuki; Fukushi, Kiyoshi; Irie, Toshiaki; Shiraishi, Tetsuya

    2010-01-01

    Background and purpose: Cholinesterase inhibitors have been widely used for the treatment of patients with dementia. Monitoring of the cholinesterase activity in the blood is used as an indicator of the effect of the cholinesterase inhibitors in the brain. The selective measurement of cholinesterase with low tissue dilution is preferred for accurate monitoring; however, the methods have not been established. Here, we investigated the effect of tissue dilution on the action of cholinesterase inhibitors using a novel radiometric method with selective substrates, N-[14C]methylpiperidin-4-yl acetate ([14C]MP4A) and (R)-N-[14C]methylpiperidin-3-yl butyrate ([14C]MP3B_R), for AChE and butyrylcholinesterase (BChE) respectively. Experimental approach: We investigated the kinetics of hydrolysis of [14C]-MP4A and [14C]-MP3B_R by cholinesterases, and evaluated the selectivity of [14C]MP4A and [14C]MP3B_R for human AChE and BChE, respectively, compared with traditional substrates. Then, IC50 values of cholinesterase inhibitors in minimally diluted and highly diluted tissues were measured with [14C]MP4A and [14C]MP3B_R. Key results: AChE and BChE activities were selectively measured as the first-order hydrolysis rates of [14C]-MP4A and [14C]MP3B_R respectively. The AChE selectivity of [14C]MP4A was an order of magnitude higher than traditional substrates used for the AChE assay. The IC50 values of specific AChE and BChE inhibitors, donepezil and ethopropazine, in 1.2-fold diluted human whole blood were much higher than those in 120-fold diluted blood. In addition, the IC50 values of donepezil in monkey brain were dramatically decreased as the tissue was diluted. Conclusions and implications: This method would effectively monitor the activity of cholinesterase inhibitors used for therapeutics, pesticides and chemical warfare agents. PMID:20401964

  19. Radiometric calibration by rank minimization.

    PubMed

    Lee, Joon-Young; Matsushita, Yasuyuki; Shi, Boxin; Kweon, In So; Ikeuchi, Katsushi

    2013-01-01

    We present a robust radiometric calibration framework that capitalizes on the transform invariant low-rank structure in the various types of observations, such as sensor irradiances recorded from a static scene with different exposure times, or linear structure of irradiance color mixtures around edges. We show that various radiometric calibration problems can be treated in a principled framework that uses a rank minimization approach. This framework provides a principled way of solving radiometric calibration problems in various settings. The proposed approach is evaluated using both simulation and real-world datasets and shows superior performance to previous approaches.

  20. Non-invasive hyperthermia apparatus including coaxial applicator having a non-invasive radiometric receiving antenna incorporated therein and method of use thereof

    DOEpatents

    Ross, M.P.

    1996-08-27

    A coaxial hyperthermia applicator is disclosed for applying non-invasively electromagnetic energy to a body against which it is placed. The coaxial applicator antenna has formed integrally within it a non-invasive radiometric antenna for receiving thermoelectromagnetic emissions. The coaxial-configured applicator produces a bell-shaped radiation pattern symmetric about the axis of symmetry of the coaxial applicator. Integrating the radiometric antenna within the coaxial applicator produces a single device that performs dual functions. The first function is to transmit non-invasively energy for heating a subcutaneous tumor. The second function is to receive non-invasively thermal electromagnetic radiation from the tumor by which temperature is sensed and fed back to control the output of the coaxial applicator. 11 figs.

  1. Non-invasive hyperthermia apparatus including coaxial applicator having a non-invasive radiometric receiving antenna incorporated therein and method of use thereof

    DOEpatents

    Ross, Michael P.

    1996-01-01

    A coaxial hyperthermia applicator for applying non-invasively electromagnetic energy to a body against which it is placed. The coaxial applicator antenna has formed integrally within it a non-invasive radiometric antenna for receiving thermoelectromagnetic emissions. The coaxial-configured applicator produces a bell-shaped radiation pattern symmetric about the axis of symmetry of the coaxial applicator. Integrating the radiometric antenna within the coaxial applicator produces a single device that performs dual functions. The first function is to transmit non-invasively energy for heating a subcutaneous tumor. The second function is to receive non-invasively thermal electromagnetic radiation from the tumor by which temperature is sensed and fed back to control the output of the coaxial applicator.

  2. REVIEW OF RAPID METHODS FOR ASSESSING WETLAND CONDITION

    EPA Science Inventory

    We evaluated over 40 wetland rapid assessment methods developed for a variety of purposes for their use in the assessment of ecological integrity or ecosystem condition. Four criteria were used to screen methods: 1) the method can be used to measure condition, 2) it is truly rap...

  3. RAPID METHOD FOR DETERMINATION OF RADIOSTRONTIUM IN EMERGENCY MILK SAMPLES

    SciTech Connect

    Maxwell, S.; Culligan, B.

    2008-07-17

    A new rapid separation method for radiostrontium in emergency milk samples was developed at the Savannah River Site (SRS) Environmental Bioassay Laboratory (Aiken, SC, USA) that will allow rapid separation and measurement of Sr-90 within 8 hours. The new method uses calcium phosphate precipitation, nitric acid dissolution of the precipitate to coagulate residual fat/proteins and a rapid strontium separation using Sr Resin (Eichrom Technologies, Darien, IL, USA) with vacuum-assisted flow rates. The method is much faster than previous method that use calcination or cation exchange pretreatment, has excellent chemical recovery, and effectively removes beta interferences. When a 100 ml sample aliquot is used, the method has a detection limit of 0.5 Bq/L, well below generic emergency action levels.

  4. Climate Change and Sounder Radiometric Stability

    NASA Technical Reports Server (NTRS)

    Pagano, Thomas S.; Aumann, Hartmut H.; Manning, Evan

    2009-01-01

    Satellite instrument radiometric stability is critical for climate studies. The Atmospheric Infrared Sounder (AIRS) radiances are of sufficient stability and accuracy to serve as a climate data record as evidenced by comparisons with the global network of buoys. In this paper we examine the sensitivity of derived geophysical products to potential instrument radiometric stability issues due to diurnal, orbital and seasonal variations. Our method is to perturb the AIRS radiances and examine the impact to retrieved parameters. Results show that instability in retrieved temperature products will be on the same order of the brightness temperature error in the radiances and follow the same time dependences. AIRS excellent stability makes it ideal for examining impacts of instabilities of future systems on geophysical parameter performance.

  5. Robust radiometric calibration and vignetting correction.

    PubMed

    Kim, Seon Joo; Pollefeys, Marc

    2008-04-01

    In many computer vision systems, it is assumed that the image brightness of a point directly reflects the scene radiance of the point. However, the assumption does not hold in most cases due to nonlinear camera response function, exposure changes, and vignetting. The effects of these factors are most visible in image mosaics and textures of 3D models where colors look inconsistent and notable boundaries exist. In this paper, we propose a full radiometric calibration algorithm that includes robust estimation of the radiometric response function, exposures, and vignetting. By decoupling the effect of vignetting from the response function estimation, we approach each process in a manner that is robust to noise and outliers. We verify our algorithm with both synthetic and real data which shows significant improvement compared to existing methods. We apply our estimation results to radiometrically align images for seamless mosaics and 3D model textures. We also use our method to create high dynamic range (HDR) mosaics which are more representative of the scene than normal mosaics.

  6. Methods and systems for rapid prototyping of high density circuits

    DOEpatents

    Palmer, Jeremy A.; Davis, Donald W.; Chavez, Bart D.; Gallegos, Phillip L.; Wicker, Ryan B.; Medina, Francisco R.

    2008-09-02

    A preferred embodiment provides, for example, a system and method of integrating fluid media dispensing technology such as direct-write (DW) technologies with rapid prototyping (RP) technologies such as stereolithography (SL) to provide increased micro-fabrication and micro-stereolithography. A preferred embodiment of the present invention also provides, for example, a system and method for Rapid Prototyping High Density Circuit (RPHDC) manufacturing of solderless connectors and pilot devices with terminal geometries that are compatible with DW mechanisms and reduce contact resistance where the electrical system is encapsulated within structural members and manual electrical connections are eliminated in favor of automated DW traces. A preferred embodiment further provides, for example, a method of rapid prototyping comprising: fabricating a part layer using stereolithography and depositing thermally curable media onto the part layer using a fluid dispensing apparatus.

  7. Lessons Learned from the AIRS Pre-Flight Radiometric Calibration

    NASA Technical Reports Server (NTRS)

    Pagano, Thomas S.; Aumann, Hartmut H.; Weiler, Margie

    2013-01-01

    The Atmospheric Infrared Sounder (AIRS) instrument flies on the NASA Aqua satellite and measures the upwelling hyperspectral earth radiance in the spectral range of 3.7-15.4 micron with a nominal ground resolution at nadir of 13.5 km. The AIRS spectra are achieved using a temperature controlled grating spectrometer and HgCdTe infrared linear arrays providing 2378 channels with a nominal spectral resolution of approximately 1200. The AIRS pre-flight tests that impact the radiometric calibration include a full system radiometric response (linearity), polarization response, and response vs scan angle (RVS). We re-derive the AIRS instrument radiometric calibration coefficients from the pre-flight polarization measurements, the response vs scan (RVS) angle tests as well as the linearity tests, and a recent lunar roll test that allowed the AIRS to view the moon. The data and method for deriving the coefficients is discussed in detail and the resulting values compared amongst the different tests. Finally, we examine the residual errors in the reconstruction of the external calibrator blackbody radiances and the efficacy of a new radiometric uncertainty model. Results show the radiometric calibration of AIRS to be excellent and the radiometric uncertainty model does a reasonable job of characterizing the errors.

  8. Rapid diagnosis of mumps virus infections by immunofluorescence methods.

    PubMed

    Lennette, D A; Emmons, R W; Lennette, E H

    1976-08-01

    Mumps and its complications, particularly meningoencephalitis, is an important disease problem, and more rapid diagnostic methods are desirable. A study was made of immunofluorescence methods for the early detection of mumps virus isolated in cell cultures, or adsorbed directly from clinical specimens onto guinea pig erythrocytes. A specific diagnosis could be made in hours to 2 or 3 days utilizing immunofluorescence methods, in contrast to about 6 days by standard methods. Details of the direct immunofluorescence methods are presented, to encourage wider application in clinical virology laboratories. PMID:787002

  9. Evaluation of a complete denture trial method applying rapid prototyping.

    PubMed

    Inokoshi, Masanao; Kanazawa, Manabu; Minakuchi, Shunsuke

    2012-02-01

    A new trial method for complete dentures using rapid prototyping (RP) was compared with the conventional method. Wax dentures were fabricated for 10 edentulous patients. Cone-beam CT was used to scan the wax dentures. Using 3D computer-aided design software, seven 3D denture images with different artificial teeth arrangements were made and seven trial dentures per patient were fabricated accordingly. Two prosthodontists performed a denture try-in for one patient using both conventional and RP methods. The prosthodontists and patients rated satisfaction for both methods using a visual analogue scale. Satisfaction ratings with both conventional and RP methods were compared using the Wilcoxon signed-rank test. Regarding prosthodontist's ratings, esthetics and stability were rated significantly higher with the conventional method than with the RP method, whereas chair time was rated significantly longer with the RP method than with the conventional method. Although further improvements are needed, the trial method applying RP seems promising.

  10. RAPID SEPARATION METHOD FOR ACTINIDES IN EMERGENCY SOIL SAMPLES

    SciTech Connect

    Maxwell, S.; Culligan, B.; Noyes, G.

    2009-11-09

    A new rapid method for the determination of actinides in soil and sediment samples has been developed at the Savannah River Site Environmental Lab (Aiken, SC, USA) that can be used for samples up to 2 grams in emergency response situations. The actinides in soil method utilizes a rapid sodium hydroxide fusion method, a lanthanum fluoride soil matrix removal step, and a streamlined column separation process with stacked TEVA, TRU and DGA Resin cartridges. Lanthanum was separated rapidly and effectively from Am and Cm on DGA Resin. Vacuum box technology and rapid flow rates are used to reduce analytical time. Alpha sources are prepared using cerium fluoride microprecipitation for counting by alpha spectrometry. The method showed high chemical recoveries and effective removal of interferences. This new procedure was applied to emergency soil samples received in the NRIP Emergency Response exercise administered by the National Institute for Standards and Technology (NIST) in April, 2009. The actinides in soil results were reported within 4-5 hours with excellent quality.

  11. Comparison of Rapid Methods for Analysis of Bacterial Fatty Acids

    PubMed Central

    Moss, C. Wayne; Lambert, M. A.; Merwin, W. H.

    1974-01-01

    When rapid gas-liquid chromatography methods for determination of bacterial fatty acids were compared, results showed that saponification was required for total fatty acid analysis. Transesterification with boron-trihalide reagents (BF3-CH3OH, BCl3-CH3OH) caused extensive degradation of cyclopropane acids and was less effective than saponification in releasing cellular hydroxy fatty acids. Digestion of cells with tetramethylammonium hydroxide was unsatisfactory because of extraneous gas-liquid chromatography peaks and because of lower recovery of branched-chain and hydroxy fatty acids. A simple, rapid saponification procedure which can be used for total cellular fatty acid analysis of freshly grown cells is described. PMID:4844271

  12. Radiometric surveys in underground environment

    NASA Astrophysics Data System (ADS)

    Bochiolo, Massimo; Chiozzi, Paolo; Verdoya, Massimo; Pasquale, Vincenzo

    2010-05-01

    Due to their ability to travel through the air for several metres, gamma-rays emitted from natural radioactive elements can be successfully used in surveys carried out both with airborne and ground equipments. Besides the concentration of the radio-elements contained in rocks and soils and the intrinsic characteristics of the gamma-ray detector, the detected count rate depends on the solid angle around the spectrometer. On a flat outcrop, ground spectrometry detects the radiation ideally produced by a cylindrical mass of rock of about two metres in diameter and thickness of about half a meter. Under these geometrical conditions, the natural radioactivity can be easily evaluated. With operating conditions different from the standard ones, such as at the edge of an escarpment, the count rate halves because of the missing material, whereas in the vicinity of a rock wall the count rate will increase. In underground environment, the recorded count rate may even double and the in situ assessment of the concentration of radio-elements may be rather difficult, even if the ratios between the different radio-elements may not be affected. We tested the applicability of gamma-ray spectrometry for rapid assessment of the potential hazard levels related to radon and radiation dose rate in underground environment. A mine shaft, located in a zone of uranium enrichment in Liguria (Italy), has been investigated. A preliminary ground radiometric survey was carried out to define the extent of the ore deposit. Then, the radiometric investigation was focussed on the mine shaft. Due to rock mass above the shaft vault, the background gamma radiation can be considered of negligible influence on measurements. In underground surveys, besides deviations from a flat geometry, factors controlling radon exhalation, emanation and stagnation, such as fractures, water leakage and the presence of ventilation, should be carefully examined. We attempted to evaluate these control factors and collected

  13. Rapid-estimation method for assessing scour at highway bridges

    USGS Publications Warehouse

    Holnbeck, Stephen R.

    1998-01-01

    A method was developed by the U.S. Geological Survey for rapid estimation of scour at highway bridges using limited site data and analytical procedures to estimate pier, abutment, and contraction scour depths. The basis for the method was a procedure recommended by the Federal Highway Administration for conducting detailed scour investigations, commonly referred to as the Level 2 method. Using pier, abutment, and contraction scour results obtained from Level 2 investigations at 122 sites in 10 States, envelope curves and graphical relations were developed that enable determination of scour-depth estimates at most bridge sites in a matter of a few hours. Rather than using complex hydraulic variables, surrogate variables more easily obtained in the field were related to calculated scour-depth data from Level 2 studies. The method was tested by having several experienced individuals apply the method in the field, and results were compared among the individuals and with previous detailed analyses performed for the sites. Results indicated that the variability in predicted scour depth among individuals applying the method generally was within an acceptable range, and that conservatively greater scour depths generally were obtained by the rapid-estimation method compared to the Level 2 method. The rapid-estimation method is considered most applicable for conducting limited-detail scour assessments and as a screening tool to determine those bridge sites that may require more detailed analysis. The method is designed to be applied only by a qualified professional possessing knowledge and experience in the fields of bridge scour, hydraulics, and flood hydrology, and having specific expertise with the Level 2 method.

  14. Optical Imaging and Radiometric Modeling and Simulation

    NASA Technical Reports Server (NTRS)

    Ha, Kong Q.; Fitzmaurice, Michael W.; Moiser, Gary E.; Howard, Joseph M.; Le, Chi M.

    2010-01-01

    OPTOOL software is a general-purpose optical systems analysis tool that was developed to offer a solution to problems associated with computational programs written for the James Webb Space Telescope optical system. It integrates existing routines into coherent processes, and provides a structure with reusable capabilities that allow additional processes to be quickly developed and integrated. It has an extensive graphical user interface, which makes the tool more intuitive and friendly. OPTOOL is implemented using MATLAB with a Fourier optics-based approach for point spread function (PSF) calculations. It features parametric and Monte Carlo simulation capabilities, and uses a direct integration calculation to permit high spatial sampling of the PSF. Exit pupil optical path difference (OPD) maps can be generated using combinations of Zernike polynomials or shaped power spectral densities. The graphical user interface allows rapid creation of arbitrary pupil geometries, and entry of all other modeling parameters to support basic imaging and radiometric analyses. OPTOOL provides the capability to generate wavefront-error (WFE) maps for arbitrary grid sizes. These maps are 2D arrays containing digital sampled versions of functions ranging from Zernike polynomials to combination of sinusoidal wave functions in 2D, to functions generated from a spatial frequency power spectral distribution (PSD). It also can generate optical transfer functions (OTFs), which are incorporated into the PSF calculation. The user can specify radiometrics for the target and sky background, and key performance parameters for the instrument s focal plane array (FPA). This radiometric and detector model setup is fairly extensive, and includes parameters such as zodiacal background, thermal emission noise, read noise, and dark current. The setup also includes target spectral energy distribution as a function of wavelength for polychromatic sources, detector pixel size, and the FPA s charge

  15. Development of a Rapid Assimilable Organic Carbon Method for Water

    PubMed Central

    LeChevallier, Mark W.; Shaw, Nancy E.; Kaplan, Louis A.; Bott, Thomas L.

    1993-01-01

    A rapid method for measurement of assimilable organic carbon (AOC) is proposed. The time needed to perform the assay is reduced by increasing the incubation temperature and increasing the inoculum density. The ATP luciferin-luciferase method quickly enumerates the test organisms without the need for plate count media or dilution bottles. There was no significant difference between AOC values determined with strain P17 for the ATP and plate count procedures. For strain NOX, the plate count procedure underestimated bacterial levels in some samples. Comparison of AOC values obtained by the Belleville laboratory (by the ATP technique) and the Stroud Water Research Center (by plate counts) showed that values were significantly correlated and not significantly different. The study concludes that the rapid AOC method can quickly determine the bacterial growth potential of water within 2 to 4 days. PMID:16348936

  16. Detection of urinary tract infections by rapid methods.

    PubMed Central

    Pezzlo, M

    1988-01-01

    A review of rapid urine screens for detection of bacteriuria and pyuria demonstrates a number of available alternatives to the culture method. Selection of one or more of these systems for routine use is dependent upon the laboratory and the patient population being tested. The laboratory approach to the diagnosis of urinary tract infection should consider the clinical diagnosis of the patient whenever possible. Keeping in mind that quantitative urine cultures alone cannot be used to detect infection in some patient populations unless lower colony counts are considered, a rapid screen may be a more practical approach. It has become accepted that 10(5) CFU/ml can no longer be used as the standard for all patient groups, that pyuria often is important in making the diagnosis of a urinary tract infection, and that most of the rapid screens are more sensitive than the culture method at 10(5) CFU/ml. Presently, no one approach can be recommended for all laboratories and all patient groups. However, each diagnostic laboratory should select one approach which is best for its situation. It is not practical, efficient, or cost effective to define a protocol for each possible clinical condition; however, all should be considered when developing a protocol. This protocol should be compatible with the patient population and communicated to the physicians. Use of a rapid screen should be beneficial to the patient, the physician, and the laboratory. PMID:3058296

  17. RAPID SEPARATION METHOD FOR ACTINIDES IN EMERGENCY AIR FILTER SAMPLES

    SciTech Connect

    Maxwell, S.; Noyes, G.; Culligan, B.

    2010-02-03

    A new rapid method for the determination of actinides and strontium in air filter samples has been developed at the Savannah River Site Environmental Lab (Aiken, SC, USA) that can be used in emergency response situations. The actinides and strontium in air filter method utilizes a rapid acid digestion method and a streamlined column separation process with stacked TEVA, TRU and Sr Resin cartridges. Vacuum box technology and rapid flow rates are used to reduce analytical time. Alpha emitters are prepared using cerium fluoride microprecipitation for counting by alpha spectrometry. The purified {sup 90}Sr fractions are mounted directly on planchets and counted by gas flow proportional counting. The method showed high chemical recoveries and effective removal of interferences. This new procedure was applied to emergency air filter samples received in the NRIP Emergency Response exercise administered by the National Institute for Standards and Technology (NIST) in April, 2009. The actinide and {sup 90}Sr in air filter results were reported in {approx}4 hours with excellent quality.

  18. A rapid method for the determination of honey diastase activity.

    PubMed

    Sakač, Nikola; Sak-Bosnar, Milan

    2012-05-15

    A new rapid method for the determination of honey diastase activity using direct potentiometric principles has been proposed. A platinum redox sensor has been used to quantify the amount of free triiodide released from a starch triiodide complex after starch hydrolysis by honey diastase. The method was tested on honey samples with varying diastase activities. The first 5 min of data for each sample were used for linear regression analysis in order to calculate diastase activity. The new method was compared with classical Schade and commercial Phadebas procedures. The results showed good correlations with both methods and offered a simple method for unit conversion to DN units for diastase activity, making the method suitable for routine analysis.

  19. A new ultrasound based method for rapid microorganism detection

    NASA Astrophysics Data System (ADS)

    Shukla, Shiva Kant; Segura, Luis Elvira; Sánchez, Carlos José Sierra; López, Pablo Resa

    2012-05-01

    A new method for rapid detection of catalase positive microorganisms by using an ultrasonic measuring method is proposed in this work. The developed technique is based on the detection of oxygen bubbles produced by the hydrolysis of hydrogen peroxide induced by the enzyme catalase which is present in many microorganisms. The bubbles are trapped in a media based on agar gel which was especially developed for microbiological evaluation. It is found that microorganism concentrations of the order of 105 c.f.u./ml can be detected by using this method. The results obtained show up that the proposed method is competitive with other modern commercial methods like luminescence by ATP system. The method can also be used for characterization of enzyme activity.

  20. [Development of a rapid method of immunologic monitoring during pregnancy].

    PubMed

    Khismatullina, N A; Iusupov, R Kh; Selimov, M A; Ianbarisova, S R

    2001-01-01

    The authors validate the efficiency of enzyme-linked immunoassay (ELISA) for rapid diagnosis of rabies and titration of specific antibodies and of the method of isolation of field rabies strains in the rat Gasser's node neurinoma cells. Highly active specific diagnostic agents for ELISA and immunofluorescent test based on sheep immunoglobulins have been created for detection of the rabies agent in pathological material from different animals and humans.

  1. Preparing Silica Aerogel Monoliths via a Rapid Supercritical Extraction Method

    PubMed Central

    Gorka, Caroline A.

    2014-01-01

    A procedure for the fabrication of monolithic silica aerogels in eight hours or less via a rapid supercritical extraction process is described. The procedure requires 15-20 min of preparation time, during which a liquid precursor mixture is prepared and poured into wells of a metal mold that is placed between the platens of a hydraulic hot press, followed by several hours of processing within the hot press. The precursor solution consists of a 1.0:12.0:3.6:3.5 x 10-3 molar ratio of tetramethylorthosilicate (TMOS):methanol:water:ammonia. In each well of the mold, a porous silica sol-gel matrix forms. As the temperature of the mold and its contents is increased, the pressure within the mold rises. After the temperature/pressure conditions surpass the supercritical point for the solvent within the pores of the matrix (in this case, a methanol/water mixture), the supercritical fluid is released, and monolithic aerogel remains within the wells of the mold. With the mold used in this procedure, cylindrical monoliths of 2.2 cm diameter and 1.9 cm height are produced. Aerogels formed by this rapid method have comparable properties (low bulk and skeletal density, high surface area, mesoporous morphology) to those prepared by other methods that involve either additional reaction steps or solvent extractions (lengthier processes that generate more chemical waste).The rapid supercritical extraction method can also be applied to the fabrication of aerogels based on other precursor recipes. PMID:24637334

  2. FACS technology used in a new rapid bacterial detection method.

    PubMed

    Schmidt, M; Hourfar, M K; Nicol, S-B; Spengler, H-P; Montag, T; Seifried, Erhard

    2006-10-01

    Culture methods for bacterial detection (BacT/ALERT or Pall eBDS) are currently implemented in blood donor screening procedures in many countries. Experience in the first years after implementation of these detection assays showed that although the analytical sensitivity was extremely high (about 1 CFU mL(-1)), the majority of these platelets were still transfused before a positive screening result was attained. Rapid technologies were developed to more effectively prevent transfusion-transmitted bacterial infection. In this study, a new rapid bacterial detection method based on fluorescence-activated cell sorting (FACS) technology was developed. Bacteria were stained with thiazole orange dye for 5 min and measurement was taken immediately after staining. The entire process took only 30 min. Six transfusion-relevant bacteria strains were tested in a spiking study. Without pre-incubation in a special bacteria growth medium, analytical sensitivity ranged between 10(5) CFU mL(-1) (Klebsiella oxytoca and Serratia marcesens) and 10(3) CFU mL(-1) (Escherichia coli). Sensitivity could be improved to 10(1) CFU mL(-1) for all tested bacteria by adding a pre-incubation step (6 h at 37 degrees C). Although preliminary in nature, results of our study suggest that bacterial detection by FACS technology in conjunction with a pre-incubation step offers a sensitive alternative technology to culture methods. Additionally, it provides the benefit of a rapid test time and the opportunity of preventing bacterial transmitted infections more effectively.

  3. Rapid enzymatic method for pectin methyl esters determination.

    PubMed

    Lękawska-Andrinopoulou, Lucyna; Vasiliou, Efstathios G; Georgakopoulos, Dimitrios G; Yialouris, Constantinos P; Georgiou, Constantinos A

    2013-01-01

    Pectin is a natural polysaccharide used in food and pharma industries. Pectin degree of methylation is an important parameter having significant influence on pectin applications. A rapid, fully automated, kinetic flow method for determination of pectin methyl esters has been developed. The method is based on a lab-made analyzer using the reverse flow-injection/stopped flow principle. Methanol is released from pectin by pectin methylesterase in the first mixing coil. Enzyme working solution is injected further downstream and it is mixed with pectin/pectin methylesterase stream in the second mixing coil. Methanol is oxidized by alcohol oxidase releasing formaldehyde and hydrogen peroxide. This reaction is coupled to horse radish peroxidase catalyzed reaction, which gives the colored product 4-N-(p-benzoquinoneimine)-antipyrine. Reaction rate is proportional to methanol concentration and it is followed using Ocean Optics USB 2000+ spectrophotometer. The analyzer is fully regulated by a lab written LabVIEW program. The detection limit was 1.47 mM with an analysis rate of 7 samples h(-1). A paired t-test with results from manual method showed that the automated method results are equivalent to the manual method at the 95% confidence interval. The developed method is rapid and sustainable and it is the first application of flow analysis in pectin analysis. PMID:24455426

  4. Rapid Enzymatic Method for Pectin Methyl Esters Determination

    PubMed Central

    Łękawska-Andrinopoulou, Lucyna; Vasiliou, Efstathios G.; Georgakopoulos, Dimitrios G.; Yialouris, Constantinos P.; Georgiou, Constantinos A.

    2013-01-01

    Pectin is a natural polysaccharide used in food and pharma industries. Pectin degree of methylation is an important parameter having significant influence on pectin applications. A rapid, fully automated, kinetic flow method for determination of pectin methyl esters has been developed. The method is based on a lab-made analyzer using the reverse flow-injection/stopped flow principle. Methanol is released from pectin by pectin methylesterase in the first mixing coil. Enzyme working solution is injected further downstream and it is mixed with pectin/pectin methylesterase stream in the second mixing coil. Methanol is oxidized by alcohol oxidase releasing formaldehyde and hydrogen peroxide. This reaction is coupled to horse radish peroxidase catalyzed reaction, which gives the colored product 4-N-(p-benzoquinoneimine)-antipyrine. Reaction rate is proportional to methanol concentration and it is followed using Ocean Optics USB 2000+ spectrophotometer. The analyzer is fully regulated by a lab written LabVIEW program. The detection limit was 1.47 mM with an analysis rate of 7 samples h−1. A paired t-test with results from manual method showed that the automated method results are equivalent to the manual method at the 95% confidence interval. The developed method is rapid and sustainable and it is the first application of flow analysis in pectin analysis. PMID:24455426

  5. Rapid quantification method for Legionella pneumophila in surface water.

    PubMed

    Wunderlich, Anika; Torggler, Carmen; Elsässer, Dennis; Lück, Christian; Niessner, Reinhard; Seidel, Michael

    2016-03-01

    World-wide legionellosis outbreaks caused by evaporative cooling systems have shown that there is a need for rapid screening methods for Legionella pneumophila in water. Antibody-based methods for the quantification of L. pneumophila are rapid, non-laborious, and relatively cheap but not sensitive enough for establishment as a screening method for surface and drinking water. Therefore, preconcentration methods have to be applied in advance to reach the needed sensitivity. In a basic test, monolithic adsorption filtration (MAF) was used as primary preconcentration method that adsorbs L. pneumophila with high efficiency. Ten-liter water samples were concentrated in 10 min and further reduced to 1 mL by centrifugal ultrafiltration (CeUF). The quantification of L. pneumophila strains belonging to the monoclonal subtype Bellingham was performed via flow-based chemiluminescence sandwich microarray immunoassays (CL-SMIA) in 36 min. The whole analysis process takes 90 min. A polyclonal antibody (pAb) against L. pneumophila serogroup 1-12 and a monoclonal antibody (mAb) against L. pneumophila SG 1 strain Bellingham were immobilized on a microarray chip. Without preconcentration, the detection limit was 4.0 × 10(3) and 2.8 × 10(3) CFU/mL determined by pAb and mAb 10/6, respectively. For samples processed by MAF-CeUF prior to SMIA detection, the limit of detection (LOD) could be decreased to 8.7 CFU/mL and 0.39 CFU/mL, respectively. A recovery of 99.8 ± 15.9% was achieved for concentrations between 1-1000 CFU/mL. The established combined analytical method is sensitive for rapid screening of surface and drinking water to allow fast hygiene control of L. pneumophila. PMID:26873217

  6. Rapid quantification method for Legionella pneumophila in surface water.

    PubMed

    Wunderlich, Anika; Torggler, Carmen; Elsässer, Dennis; Lück, Christian; Niessner, Reinhard; Seidel, Michael

    2016-03-01

    World-wide legionellosis outbreaks caused by evaporative cooling systems have shown that there is a need for rapid screening methods for Legionella pneumophila in water. Antibody-based methods for the quantification of L. pneumophila are rapid, non-laborious, and relatively cheap but not sensitive enough for establishment as a screening method for surface and drinking water. Therefore, preconcentration methods have to be applied in advance to reach the needed sensitivity. In a basic test, monolithic adsorption filtration (MAF) was used as primary preconcentration method that adsorbs L. pneumophila with high efficiency. Ten-liter water samples were concentrated in 10 min and further reduced to 1 mL by centrifugal ultrafiltration (CeUF). The quantification of L. pneumophila strains belonging to the monoclonal subtype Bellingham was performed via flow-based chemiluminescence sandwich microarray immunoassays (CL-SMIA) in 36 min. The whole analysis process takes 90 min. A polyclonal antibody (pAb) against L. pneumophila serogroup 1-12 and a monoclonal antibody (mAb) against L. pneumophila SG 1 strain Bellingham were immobilized on a microarray chip. Without preconcentration, the detection limit was 4.0 × 10(3) and 2.8 × 10(3) CFU/mL determined by pAb and mAb 10/6, respectively. For samples processed by MAF-CeUF prior to SMIA detection, the limit of detection (LOD) could be decreased to 8.7 CFU/mL and 0.39 CFU/mL, respectively. A recovery of 99.8 ± 15.9% was achieved for concentrations between 1-1000 CFU/mL. The established combined analytical method is sensitive for rapid screening of surface and drinking water to allow fast hygiene control of L. pneumophila.

  7. Method for rapidly producing microporous and mesoporous materials

    DOEpatents

    Coronado, P.R.; Poco, J.F.; Hrubesh, L.W.; Hopper, R.W.

    1997-11-11

    An improved, rapid process is provided for making microporous and mesoporous materials, including aerogels and pre-ceramics. A gel or gel precursor is confined in a sealed vessel to prevent structural expansion of the gel during the heating process. This confinement allows the gelation and drying processes to be greatly accelerated, and significantly reduces the time required to produce a dried aerogel compared to conventional methods. Drying may be performed either by subcritical drying with a pressurized fluid to expel the liquid from the gel pores or by supercritical drying. The rates of heating and decompression are significantly higher than for conventional methods. 3 figs.

  8. Rapid method for fabricating polymeric biconvex parabolic lenslets.

    PubMed

    Sun, Rongrong; Li, Yang; Li, Lei

    2014-09-15

    Microlenslets as well as microlens arrays have shown tremendous attractions and successes in miniature optical systems in recent decades. However, the fabrication methods for microlenslets and microlenslet arrays are limited. In this Letter, a rapid and low-cost method for fabricating polymeric biconvex lenslets is presented. This newly developed process is simply based on wetting behavior at interface and is able to produce high-quality biconvex lenslets with controllable size and shape. This technology will greatly simplify the production process and reduce the manufacturing costs for micro-optics. PMID:26466280

  9. Method for rapidly producing microporous and mesoporous materials

    DOEpatents

    Coronado, Paul R.; Poco, John F.; Hrubesh, Lawrence W.; Hopper, Robert W.

    1997-01-01

    An improved, rapid process is provided for making microporous and mesoporous materials, including aerogels and pre-ceramics. A gel or gel precursor is confined in a sealed vessel to prevent structural expansion of the gel during the heating process. This confinement allows the gelation and drying processes to be greatly accelerated, and significantly reduces the time required to produce a dried aerogel compared to conventional methods. Drying may be performed either by subcritical drying with a pressurized fluid to expel the liquid from the gel pores or by supercritical drying. The rates of heating and decompression are significantly higher than for conventional methods.

  10. Rapid surface enhanced Raman scattering detection method for chloramphenicol residues.

    PubMed

    Ji, Wei; Yao, Weirong

    2015-06-01

    Chloramphenicol (CAP) is a widely used amide alcohol antibiotics, which has been banned from using in food producing animals in many countries. In this study, surface enhanced Raman scattering (SERS) coupled with gold colloidal nanoparticles was used for the rapid analysis of CAP. Density functional theory (DFT) calculations were conducted with Gaussian 03 at the B3LYP level using the 3-21G(d) and 6-31G(d) basis sets to analyze the assignment of vibrations. Affirmatively, the theoretical Raman spectrum of CAP was in complete agreement with the experimental spectrum. They both exhibited three strong peaks characteristic of CAP at 1104 cm(-1), 1344 cm(-1), 1596 cm(-1), which were used for rapid qualitative analysis of CAP residues in food samples. The use of SERS as a method for the measurements of CAP was explored by comparing use of different solvents, gold colloidal nanoparticles concentration and absorption time. The method of the detection limit was determined as 0.1 μg/mL using optimum conditions. The Raman peak at 1344 cm(-1) was used as the index for quantitative analysis of CAP in food samples, with a linear correlation of R(2)=0.9802. Quantitative analysis of CAP residues in foods revealed that the SERS technique with gold colloidal nanoparticles was sensitive and of a good stability and linear correlation, and suited for rapid analysis of CAP residue in a variety of food samples. PMID:25754387

  11. Rapid surface enhanced Raman scattering detection method for chloramphenicol residues

    NASA Astrophysics Data System (ADS)

    Ji, Wei; Yao, Weirong

    2015-06-01

    Chloramphenicol (CAP) is a widely used amide alcohol antibiotics, which has been banned from using in food producing animals in many countries. In this study, surface enhanced Raman scattering (SERS) coupled with gold colloidal nanoparticles was used for the rapid analysis of CAP. Density functional theory (DFT) calculations were conducted with Gaussian 03 at the B3LYP level using the 3-21G(d) and 6-31G(d) basis sets to analyze the assignment of vibrations. Affirmatively, the theoretical Raman spectrum of CAP was in complete agreement with the experimental spectrum. They both exhibited three strong peaks characteristic of CAP at 1104 cm-1, 1344 cm-1, 1596 cm-1, which were used for rapid qualitative analysis of CAP residues in food samples. The use of SERS as a method for the measurements of CAP was explored by comparing use of different solvents, gold colloidal nanoparticles concentration and absorption time. The method of the detection limit was determined as 0.1 μg/mL using optimum conditions. The Raman peak at 1344 cm-1 was used as the index for quantitative analysis of CAP in food samples, with a linear correlation of R2 = 0.9802. Quantitative analysis of CAP residues in foods revealed that the SERS technique with gold colloidal nanoparticles was sensitive and of a good stability and linear correlation, and suited for rapid analysis of CAP residue in a variety of food samples.

  12. A novel method for rapid in vitro radiobioassay

    NASA Astrophysics Data System (ADS)

    Crawford, Evan Bogert

    Rapid and accurate analysis of internal human exposure to radionuclides is essential to the effective triage and treatment of citizens who have possibly been exposed to radioactive materials in the environment. The two most likely scenarios in which a large number of citizens would be exposed are the detonation of a radiation dispersal device (RDD, "dirty bomb") or the accidental release of an isotope from an industrial source such as a radioisotopic thermal generator (RTG). In the event of the release and dispersion of radioactive materials into the environment in a large city, the entire population of the city -- including all commuting workers and tourists -- would have to be rapidly tested, both to satisfy the psychological needs of the citizens who were exposed to the mental trauma of a possible radiation dose, and to satisfy the immediate medical needs of those who received the highest doses and greatest levels of internal contamination -- those who would best benefit from rapid, intensive medical care. In this research a prototype rapid screening method to screen urine samples for the presence of up to five isotopes, both individually and in a mixture, has been developed. The isotopes used to develop this method are Co-60, Sr-90, Cs-137, Pu-238, and Am-241. This method avoids time-intensive chemical separations via the preparation and counting of a single sample on multiple detectors, and analyzing the spectra for isotope-specific markers. A rapid liquid-liquid separation using an organic extractive scintillator can be used to help quantify the activity of the alpha-emitting isotopes. The method provides quantifiable results in less than five minutes for the activity of beta/gamma-emitting isotopes when present in the sample at the intervention level as defined by the Centers for Disease Control and Prevention (CDC), and quantifiable results for the activity levels of alpha-emitting isotopes present at their respective intervention levels in approximately 30

  13. Rapid method for the quantification of hydroquinone concentration: chemiluminescent analysis.

    PubMed

    Chen, Tung-Sheng; Liou, Show-Yih; Kuo, Wei-Wen; Wu, Hsi-Chin; Jong, Gwo-Ping; Wang, Hsueh-Fang; Shen, Chia-Yao; Padma, V Vijaya; Huang, Chih-Yang; Chang, Yen-Lin

    2015-11-01

    Topical hydroquinone serves as a skin whitener and is usually available in cosmetics or on prescription based on the hydroquinone concentration. Quantification of hydroquinone content therefore becomes an important issue in topical agents. High-performance liquid chromatography (HPLC) is the commonest method for determining hydroquinone content in topical agents, but this method is time-consuming and uses many solvents that can become an environmental issue. We report a rapid method for quantifying hydroquinone content by chemiluminescent analysis. Hydroquinone induces the production of hydrogen peroxide in the presence of basic compounds. Hydrogen peroxide induced by hydroquinone oxidized light-emitting materials such as lucigenin, resulted in the production of ultra-weak chemiluminescence that was detected by a chemiluminescence analyzer. The intensity of the chemiluminescence was found to be proportional to the hydroquinone concentration. We suggest that the rapid (measurement time, 60 s) and virtually solvent-free (solvent volume, <2 mL) chemiluminescent method described here for quantifying hydroquinone content may be an alternative to HPLC analysis. PMID:25693839

  14. Assessment of VIIRS radiometric performance using vicarious calibration sites

    NASA Astrophysics Data System (ADS)

    Uprety, Sirish; Cao, Changyong; Blonski, Slawomir; Wang, Wenhui

    2014-09-01

    Radiometric performance of satellite instruments needs to be regularly monitored to determine if there is any drift in the instrument response over time despite the calibration with the best effort. If a drift occurs, it needs to be characterized in order to keep the radiometric accuracy and stability well within the specification. Instrument gain change over time can be validated independently using many techniques such as using stable earth targets (desert, ocean, snow sites etc), inter-comparison with other well calibrated radiometers (using SNO, SNO-x), deep convective clouds (DCC), lunar observations or other methods. This study focus on using vicarious calibration sites for the assessment of radiometric performance of Suomi National Polar-Orbiting Partnership (S-NPP) Visible Infrared Imaging Radiometer Suite (VIIRS) reflective solar bands. The calibration stability is primarily analyzed by developing the top-of-atmosphere (TOA) reflectance time series over these sites. In addition, the radiometric bias relative to AQUA MODIS is estimated over these calibration sites and analyzed. The radiometric bias is quantified in terms of observed and spectral bias. The spectral characterization and bias analysis will be performed using hyperspectral measurements and radiative transfer models such as MODTRAN.

  15. A Rapid Method for Engineering Recombinant Polioviruses or Other Enteroviruses.

    PubMed

    Bessaud, Maël; Pelletier, Isabelle; Blondel, Bruno; Delpeyroux, Francis

    2016-01-01

    The cloning of large enterovirus RNA sequences is labor-intensive because of the frequent instability in bacteria of plasmidic vectors containing the corresponding cDNAs. In order to circumvent this issue we have developed a PCR-based method that allows the generation of highly modified or chimeric full-length enterovirus genomes. This method relies on fusion PCR which enables the concatenation of several overlapping cDNA amplicons produced separately. A T7 promoter sequence added upstream the fusion PCR products allows its transcription into infectious genomic RNAs directly in transfected cells constitutively expressing the phage T7 RNA polymerase. This method permits the rapid recovery of modified viruses that can be subsequently amplified on adequate cell-lines. PMID:26983739

  16. A Rapid Usability Evaluation (RUE) Method for Health Information Technology.

    PubMed

    Russ, Alissa L; Baker, Darrell A; Fahner, W Jeffrey; Milligan, Bryce S; Cox, Leeann; Hagg, Heather K; Saleem, Jason J

    2010-11-13

    Usability testing can help generate design ideas to enhance the quality and safety of health information technology. Despite these potential benefits, few healthcare organizations conduct systematic usability testing prior to software implementation. We used a Rapid Usability Evaluation (RUE) method to apply usability testing to software development at a major VA Medical Center. We describe the development of the RUE method, provide two examples of how it was successfully applied, and discuss key insights gained from this work. Clinical informaticists with limited usability training were able to apply RUE to improve software evaluation and elected to continue to use this technique. RUE methods are relatively simple, do not require advanced training or usability software, and should be easy to adopt. Other healthcare organizations may be able to implement RUE to improve software effectiveness, efficiency, and safety.

  17. A Rapid Method for the Diagnosis of Equine Virus Abortion

    PubMed Central

    Correa, W. M.

    1970-01-01

    Smears and imprints were made from the liver of 27 equine fetuses, believed to have aborted as a result of Equine Virus Abortion (EVA) infection. Several different fixatives and staining techniques were employed for the demonstration of typical intra-nuclear inclusion bodies in these preparations, and the following conclusions were reached. Methanol proved to be the best fixative and Pappenheim's panoptic method was the best staining technique, giving good contrast and definition of the inclusion bodies. Cytological methods provided a simple and rapid means of diagnosis, but histological sections provided evidence of lesions which was most useful when inclusion bodies were very difficult to find. However, cytological methods proved better than histological sections for the demonstration of EVA intranuclear inclusion bodies. ImagesFig. 1. PMID:4192198

  18. A Rapid Method for Refolding Cell Surface Receptors and Ligands

    PubMed Central

    Zhai, Lu; Wu, Ling; Li, Feng; Burnham, Robert S.; Pizarro, Juan C.; Xu, Bin

    2016-01-01

    Production of membrane-associated cell surface receptors and their ligands is often a cumbersome, expensive, and time-consuming process that limits detailed structural and functional characterization of this important class of proteins. Here we report a rapid method for refolding inclusion-body-based, recombinant cell surface receptors and ligands in one day, a speed equivalent to that of soluble protein production. This method efficiently couples modular on-column immobilized metal ion affinity purification and solid-phase protein refolding. We demonstrated the general utility of this method for producing multiple functionally active immunoreceptors, ligands, and viral decoys, including challenging cell surface proteins that cannot be produced using typical dialysis- or dilution-based refolding approaches. PMID:27215173

  19. Absolute Radiometric Calibration of KOMPSAT-3A

    NASA Astrophysics Data System (ADS)

    Ahn, H. Y.; Shin, D. Y.; Kim, J. S.; Seo, D. C.; Choi, C. U.

    2016-06-01

    This paper presents a vicarious radiometric calibration of the Korea Multi-Purpose Satellite-3A (KOMPSAT-3A) performed by the Korea Aerospace Research Institute (KARI) and the Pukyong National University Remote Sensing Group (PKNU RSG) in 2015.The primary stages of this study are summarized as follows: (1) A field campaign to determine radiometric calibrated target fields was undertaken in Mongolia and South Korea. Surface reflectance data obtained in the campaign were input to a radiative transfer code that predicted at-sensor radiance. Through this process, equations and parameters were derived for the KOMPSAT-3A sensor to enable the conversion of calibrated DN to physical units, such as at-sensor radiance or TOA reflectance. (2) To validate the absolute calibration coefficients for the KOMPSAT-3A sensor, we performed a radiometric validation with a comparison of KOMPSAT-3A and Landsat-8 TOA reflectance using one of the six PICS (Libya 4). Correlations between top-of-atmosphere (TOA) radiances and the spectral band responses of the KOMPSAT-3A sensors at the Zuunmod, Mongolia and Goheung, South Korea sites were significant for multispectral bands. The average difference in TOA reflectance between KOMPSAT-3A and Landsat-8 image over the Libya 4, Libya site in the red-green-blue (RGB) region was under 3%, whereas in the NIR band, the TOA reflectance of KOMPSAT-3A was lower than the that of Landsat-8 due to the difference in the band passes of two sensors. The KOMPSAT-3Aensor includes a band pass near 940 nm that can be strongly absorbed by water vapor and therefore displayed low reflectance. Toovercome this, we need to undertake a detailed analysis using rescale methods, such as the spectral bandwidth adjustment factor.

  20. Method for rapidly determining a pulp kappa number using spectrophotometry

    SciTech Connect

    Chai, Xin-Sheng; Zhu, Jun Yong

    2002-01-01

    A system and method for rapidly determining the pulp kappa number through direct measurement of the potassium permanganate concentration in a pulp-permanganate solution using spectrophotometry. Specifically, the present invention uses strong acidification to carry out the pulp-permanganate oxidation reaction in the pulp-permanganate solution to prevent the precipitation of manganese dioxide (MnO.sub.2). Consequently, spectral interference from the precipitated MnO.sub.2 is eliminated and the oxidation reaction becomes dominant. The spectral intensity of the oxidation reaction is then analyzed to determine the pulp kappa number.

  1. A method to rapidly create protein aggregates in living cells

    PubMed Central

    Miyazaki, Yusuke; Mizumoto, Kota; Dey, Gautam; Kudo, Takamasa; Perrino, John; Chen, Ling-chun; Meyer, Tobias; Wandless, Thomas J.

    2016-01-01

    The accumulation of protein aggregates is a common pathological hallmark of many neurodegenerative diseases. However, we do not fully understand how aggregates are formed or the complex network of chaperones, proteasomes and other regulatory factors involved in their clearance. Here, we report a chemically controllable fluorescent protein that enables us to rapidly produce small aggregates inside living cells on the order of seconds, as well as monitor the movement and coalescence of individual aggregates into larger structures. This method can be applied to diverse experimental systems, including live animals, and may prove valuable for understanding cellular responses and diseases associated with protein aggregates. PMID:27229621

  2. Rapid coulometric method for the Kjeldahl determination of nitrogen.

    PubMed

    Boström, C A; Cedergren, A; Johansson, G; Pettersson, I

    1974-11-01

    A rapid coulometric method for the Kjeldahl determination of nitrogen is described. The samples are digested by means of the Tecator AB digestion system which permits forty samples to be digested at the same time. The digestion products are diluted to 75 ml and 1 ml is coulometrically titrated in 1-2 min: 20-30 determinations can be performed per hour. For substances containing nitrogen in the per cent range the relative standard deviations for eight different substances were 0.1-1%.

  3. Method for producing rapid pH changes

    DOEpatents

    Clark, J.H.; Campillo, A.J.; Shapiro, S.L.; Winn, K.R.

    A method of initiating a rapid pH change in a solution comprises irradiating the solution with an intense flux of electromagnetic radiation of a frequency which produces a substantial pK change to a compound in solution. To optimize the resulting pH change, the compound being irradiated in solution should have an excited state lifetime substantially longer than the time required to establish an excited state acid-base equilibrium in the solution. Desired pH changes can be accomplished in nanoseconds or less by means of picosecond pulses of laser radiation.

  4. Method for producing rapid pH changes

    DOEpatents

    Clark, John H.; Campillo, Anthony J.; Shapiro, Stanley L.; Winn, Kenneth R.

    1981-01-01

    A method of initiating a rapid pH change in a solution by irradiating the solution with an intense flux of electromagnetic radiation of a frequency which produces a substantial pK change to a compound in solution. To optimize the resulting pH change, the compound being irradiated in solution should have an excited state lifetime substantially longer than the time required to establish an excited state acid-base equilibrium in the solution. Desired pH changes can be accomplished in nanoseconds or less by means of picosecond pulses of laser radiation.

  5. Radiometric acid-base titrations.

    PubMed

    Erdey, L; Gimesi, O; Szabadváry, F

    1969-03-01

    Acid-base titrations can be performed with radiometric end-point detection by use of labelled metal salts (e.g., ZnCl(2), HgCl(2)). Owing to the formation or dissolution of the corresponding hydroxide after the equivalence point, the activity of the titrated solution linearly increases or decreases as excess of standard solution is added. The end-point of the titration is determined graphically.

  6. Landsat-5 TM reflective-band absolute radiometric calibration

    USGS Publications Warehouse

    Chander, G.; Helder, D.L.; Markham, B.L.; Dewald, J.D.; Kaita, E.; Thome, K.J.; Micijevic, E.; Ruggles, T.A.

    2004-01-01

    The Landsat-5 Thematic Mapper (TM) sensor provides the longest running continuous dataset of moderate spatial resolution remote sensing imagery, dating back to its launch in March 1984. Historically, the radiometric calibration procedure for this imagery used the instrument's response to the Internal Calibrator (IC) on a scene-by-scene basis to determine the gain and offset of each detector. Due to observed degradations in the IC, a new procedure was implemented for U.S.-processed data in May 2003. This new calibration procedure is based on a lifetime radiometric calibration model for the instrument's reflective bands (1-5 and 7) and is derived, in part, from the IC response without the related degradation effects and is tied to the cross calibration with the Landsat-7 Enhanced Thematic Mapper Plus. Reflective-band absolute radiometric accuracy of the instrument tends to be on the order of 7% to 10%, based on a variety of calibration methods.

  7. Radiometric Dating in Geology.

    ERIC Educational Resources Information Center

    Pankhurst, R. J.

    1980-01-01

    Described are several aspects and methods of quantitatively measuring geologic time using a constant-rate natural process of radioactive decay. Topics include half lives and decay constants, radiogenic growth, potassium-argon dating, rubidium-strontium dating, and the role of geochronology in support of geological exploration. (DS)

  8. Sentinel-3 OLCI Radiometric and Spectral Performance Activities

    NASA Astrophysics Data System (ADS)

    Bourg, L.; Blanot, L.; Lamquin, N.; Bruniquel, V.; Meskini, N.; Nieke, J.; Bouvet, M.; Fougnie, B.

    2015-12-01

    The paper presents the activities to be undertaken by ACRI-ST under ESA/ESTEC coordination for the assessment of OLCI Radiometric and Spectral Performances during the SENTINEL-3 Commissioning Phase. As an introduction, it briefly describes the instrument concept and available on-board calibration hardware, the context and main objective of the work. Insisting on the fact that radiometric calibration of OLCI is based on in-flight measurements, as was for MERIS, it then describes the methodology and tools to be used during Commissioning. Finally, as in-flight based radiometry implies the need for independent validation, it describes the corresponding methods and tools.

  9. RAPID SEPARATION METHOD FOR EMERGENCY WATER AND URINE SAMPLES

    SciTech Connect

    Maxwell, S.; Culligan, B.

    2008-08-27

    The Savannah River Site Environmental Bioassay Lab participated in the 2008 NRIP Emergency Response program administered by the National Institute for Standards and Technology (NIST) in May, 2008. A new rapid column separation method was used for analysis of actinides and {sup 90}Sr the NRIP 2008 emergency water and urine samples. Significant method improvements were applied to reduce analytical times. As a result, much faster analysis times were achieved, less than 3 hours for determination of {sup 90}Sr and 3-4 hours for actinides. This represents a 25%-33% improvement in analysis times from NRIP 2007 and a {approx}100% improvement compared to NRIP 2006 report times. Column flow rates were increased by a factor of two, with no significant adverse impact on the method performance. Larger sample aliquots, shorter count times, faster cerium fluoride microprecipitation and streamlined calcium phosphate precipitation were also employed. Based on initial feedback from NIST, the SRS Environmental Bioassay Lab had the most rapid analysis times for actinides and {sup 90}Sr analyses for NRIP 2008 emergency urine samples. High levels of potential matrix interferences may be present in emergency samples and rugged methods are essential. Extremely high levels of {sup 210}Po were found to have an adverse effect on the uranium results for the NRIP-08 urine samples, while uranium results for NRIP-08 water samples were not affected. This problem, which was not observed for NRIP-06 or NRIP-07 urine samples, was resolved by using an enhanced {sup 210}Po removal step, which will be described.

  10. A rapid, inexpensive high throughput screen method for neurite outgrowth.

    PubMed

    Yeyeodu, Susan T; Witherspoon, Sam M; Gilyazova, Nailya; Ibeanu, Gordon C

    2010-01-01

    Neurite outgrowth assays are the most common phenotypic screen to assess chemical effects on neuronal cells. Current automated assays involve expensive equipment, lengthy sample preparation and handling, costly reagents and slow rates of data acquisition and analysis. We have developed a high throughput screen (HTS) for neurite outgrowth using a robust neuronal cell model coupled to fast and inexpensive visualization methods, reduced data volume and rapid data analysis. Neuroscreen-1 (NS-1) cell, a subclone of PC12, possessing rapid growth and enhanced sensitivity to NGF was used as a model neuron. This method reduces preparation time by using cells expressing GFP or native cells stained with HCS CellMask(™) Red in a multiplexed 30 min fixation and staining step. A 2x2 camera binning process reduced both image data files and analysis times by 75% and 60% respectively, compared to current protocols. In addition, eliminating autofocus steps during montage generation reduced data collection time. Pharmacological profiles for stimulation and inhibition of neurite outgrowth by NGF and SU6656 were comparable to current standard method utilizing immunofluorescence detection of tubulin. Potentiation of NGF-induced neurite outgrowth by members of a 1,120-member Prestwick compound library as assayed using this method identified six molecules, including etoposide, isoflupredone acetate, fludrocortisone acetate, thioguanosine, oxyphenbutazone and gibberellic acid, that more than doubled the neurite mass primed by 2 ng/ml NGF. This simple procedure represents an important routine approach in high throughput screening of large chemical libraries using the neurite outgrowth phenotype as a measure of the effects of chemical molecules on neuronal cells. PMID:21347208

  11. Radiometric Calibration of Earth-Observing Sensors Using the Radiometric Calibration Test Site (RadCaTS)

    NASA Astrophysics Data System (ADS)

    Czapla-Myers, J.; Anderson, N. J.; Thome, K. J.; Biggar, S. F.

    2014-12-01

    The Remote Sensing Group (RSG) of the College of Optical Sciences at the University of Arizona uses the reflectance-based approach to perform the absolute radiometric calibration of such sensors as Landsat 5 TM, Landsat 7 ETM+, Landsat 8 OLI, Terra and Aqua MODIS, ASTER, RapidEye, and others. The reflectance-based approach requires that personnel be present at a test site during the sensor overpass, so the Radiometric Calibration Test Site (RadCaTS) was developed in order to capture data during every possible overpass, which assists in the temporal trending of the radiometric calibration of earth-observing sensors. The number of earth-observing sensors is rapidly increasing in recent years, and RadCaTS provides the ability to radiometrically calibrate them without the requirement of frequent field campaigns. The 2013 launch of Landsat 8 provides a unique opportunity for RadCaTS in that it is being used to supplement the in situ measurements by RSG ground personnel, and it will be used throughout the lifetime of the Landsat 8 mission. This allows more data to be collected throughout the year, and it also allows the accuracy and uncertainty of RadCaTS to be analyzed. The current top-of-atmosphere (TOA) spectral radiance uncertainty of the reflectance-based approach is ~2.6% in the mid-visible region of the spectrum, and current work indicates that the uncertainty of RadCaTS in TOA spectral radiance is ~3-4%. This work presents the radiometric calibration results of RadCaTS for a variety of sensors such as Landsat 7 ETM+, Landsat 8 OLI, Terra and Aqua MODIS, MISR, ASTER, and Suomi NPP VIIRS.

  12. A Microwave Radiometric Method to Obtain the Average Path Profile of Atmospheric Temperature and Humidity Structure Parameters and Its Application to Optical Propagation System Assessment

    NASA Technical Reports Server (NTRS)

    Manning, Robert M.; Vyhnalek, Brian E.

    2015-01-01

    The values of the key atmospheric propagation parameters Ct2, Cq2, and Ctq are highly dependent upon the vertical height within the atmosphere thus making it necessary to specify profiles of these values along the atmospheric propagation path. The remote sensing method suggested and described in this work makes use of a rapidly integrating microwave profiling radiometer to capture profiles of temperature and humidity through the atmosphere. The integration times of currently available profiling radiometers are such that they are approaching the temporal intervals over which one can possibly make meaningful assessments of these key atmospheric parameters. Since these parameters are fundamental to all propagation conditions, they can be used to obtain Cn2 profiles for any frequency, including those for an optical propagation path. In this case the important performance parameters of the prevailing isoplanatic angle and Greenwood frequency can be obtained. The integration times are such that Kolmogorov turbulence theory and the Taylor frozen-flow hypothesis must be transcended. Appropriate modifications to these classical approaches are derived from first principles and an expression for the structure functions are obtained. The theory is then applied to an experimental scenario and shows very good results.

  13. Compact radiometric microwave calibrator

    SciTech Connect

    Fixsen, D. J.; Wollack, E. J.; Kogut, A.; Limon, M.; Mirel, P.; Singal, J.; Fixsen, S. M.

    2006-06-15

    The calibration methods for the ARCADE II instrument are described and the accuracy estimated. The Steelcast coated aluminum cones which comprise the calibrator have a low reflection while maintaining 94% of the absorber volume within 5 mK of the base temperature (modeled). The calibrator demonstrates an absorber with the active part less than one wavelength thick and only marginally larger than the mouth of the largest horn and yet black (less than -40 dB or 0.01% reflection) over five octaves in frequency.

  14. Rapid sampling for rapid analysis: A new method for VOCs in drinking water

    SciTech Connect

    Gardner, B.D.; Johnson, J.A.; Holland, J.F.

    1995-12-31

    Until recently, there has been only moderate emphasis placed on the time consumption of the sampling process in many gas chromatography/mass spectrometry (GC/MS) analyses. Historically, the total analysis time has been primarily dependent upon the chromatographic separation and detection steps, and significant decreases in sample preparation time have had little impact on overall sample throughput. The recent maturation of gas chromatography/time-of-flight mass spectrometry (GC/TOFMS) using time array detection has decreased chromatographic separation and mass spectrometric detection times by factors of 10 or more, leaving the sampling process as a significant and often limiting factor in the total analysis time. Current methods for the analysis of volatile organic compounds (VOCs) in drinking water utilize headspace or purge and trap techniques requiring 20-30 minute sampling times to extract these compounds for analysis by GC/MS. Solid-phase microextraction (SPME) has recently been presented as a viable alternative to the above methods. Sampling and desorption times of less than 10 minutes have been reported for part-per-billion levels of volatile organics in aqueous solution. These rapid times suggest a potential for combining SPME and GC/TOFMS technologies to create a methodology for high sample throughput.

  15. Rapid assessment methods of resilience for natural and agricultural systems.

    PubMed

    Torrico, Juan C; Janssens, Marc J J

    2010-12-01

    The resilience, ecological function and quality of both agricultural and natural systems were evaluated in the mountainous region of the Atlantic Rain Forest of Rio de Janeiro through Rapid Assessment Methods. For this goal new indicators were proposed, such as eco-volume, eco-height, bio-volume, volume efficiency, and resilience index. The following agricultural and natural systems have been compared according: (i) vegetables (leaf, fruit and mixed); (ii) citrus; (iii) ecological system; (iv) cattle, (v) silvo-pastoral system, (vi) forest fragment and (vii) forest in regeneration stage (1, 2 and 3 years old). An alternative measure (index) of resilience was proposed by considering the actual bio-volume as a function of the potential eco-volume. The objectives and hypotheses were fulfilled; it is shown that there does exist a high positive correlation between resilience index, biomass, energy efficiency and biodiversity. Cattle and vegetable systems have lowest resilience, whilst ecological and silvo-pastoral systems have greatest resilience. This new approach offers a rapid, though valuable assessment tool for ecological studies, agricultural development and landscape planning, particularly in tropical countries.

  16. Rapid method for the interconnection of single nano-objects

    NASA Astrophysics Data System (ADS)

    Della Torre, A.; Monteduro, A. G.; Maruccio, G.; Pugliese, M.; Ferrara, F.; Ercolani, D.; Roddaro, S.; Sorba, L.; Rinaldi, R.

    2015-05-01

    Increasing the ease and the rapidity of processing in micro and nanotechnology is an ongoing task, which is pursued in both the academic environment for investigation of novel systems and in industry for fabrication of complex circuits on a large scale. In the field of nanoelectronics, the major challenge is to demonstrate a feasible method for device implementation based on individual nanosize objects, such as nanowires, nanotubes and nanocrystals. However, integrating these small objects in a macroscopic circuit is a difficult task. So far, nanostructures have been wired by highly sophisticated techniques not suitable for large-scale integration in macroscopic circuits, such as electron-beam lithography or focused ion-beam deposition. Here we present a ‘one-pot’ and rapid approach to electrically interconnect individual nanowires from random spatial distribution, with high spatial and positioning resolution and a remarkable reduction in overall fabrication time with respect to the other expensive and laborious techniques. The reliability of such technique is demonstrated by implementing a single semiconductor nanowire device

  17. Rapid method for proline determination in grape juice and wine.

    PubMed

    Long, Danfeng; Wilkinson, Kerry L; Poole, Kate; Taylor, Dennis K; Warren, Tristan; Astorga, Alejandra M; Jiranek, Vladimir

    2012-05-01

    Proline is typically the most abundant amino acid present in grape juice and wine. The amount present is influenced by viticultural and winemaking factors and can be of diagnostic importance. A method for rapid routine quantitation of proline would therefore be of benefit for wine researchers and the industry in general. Colorimetric determination utilizing isatin as a derivatizing agent has previously been applied to plant extracts, biological fluids, and protein hydrolysates. In the current study, this method has been successfully adapted to grape juice and wine and proved to be sensitive to milligram per liter amounts of proline. At sugar concentrations above 60 g/L, interference from the isatin-proline reaction was observed, such that proline concentrations were considerably underestimated in grape juice and dessert wine. However, the method was robust for the analysis of fermentation samples and table wines. Results were within ±10% agreement with data generated from typical HPLC-based analyses. The isatin method is therefore considered suitable for the routine analysis required to support research into the utilization or release of proline by yeast during fermentation. PMID:22480274

  18. A simple method for rapidly processing HEU from weapons returns

    SciTech Connect

    McLean, W. II; Miller, P.E.

    1994-01-01

    A method based on the use of a high temperature fluidized bed for rapidly oxidizing, homogenizing and down-blending Highly Enriched Uranium (HEU) from dismantled nuclear weapons is presented. This technology directly addresses many of the most important issues that inhibit progress in international commerce in HEU; viz., transaction verification, materials accountability, transportation and environmental safety. The equipment used to carry out the oxidation and blending is simple, inexpensive and highly portable. Mobile facilities to be used for point-of-sale blending and analysis of the product material are presented along with a phased implementation plan that addresses the conversion of HEU derived from domestic weapons and related waste streams as well as material from possible foreign sources such as South Africa or the former Soviet Union.

  19. Statistical Methods for Rapid Aerothermal Analysis and Design Technology: Validation

    NASA Technical Reports Server (NTRS)

    DePriest, Douglas; Morgan, Carolyn

    2003-01-01

    The cost and safety goals for NASA s next generation of reusable launch vehicle (RLV) will require that rapid high-fidelity aerothermodynamic design tools be used early in the design cycle. To meet these requirements, it is desirable to identify adequate statistical models that quantify and improve the accuracy, extend the applicability, and enable combined analyses using existing prediction tools. The initial research work focused on establishing suitable candidate models for these purposes. The second phase is focused on assessing the performance of these models to accurately predict the heat rate for a given candidate data set. This validation work compared models and methods that may be useful in predicting the heat rate.

  20. Rapid identification of cytokinins by an immunological method

    SciTech Connect

    Morris, R.O.; Jameson, P.E.; Morris, J.W. ); Laloue, M. )

    1991-04-01

    A method for rapid identification of bacterial cytokinins has been developed in which cultures are fed ({sup 3}H)adenine, the cytokinins (including, {sup 3}H-labeled cytokinins) are isolated by immunoaffinity chromatography, and analyzed by HPLC with on-line scintillation counting. Analysis of Agrobacterium tumefaciens strains showed that some produced primarily trans-zeatin, whereas others produced primarily trans-zeatin riboside. Pseudomonas syringae pv savastanoi produced mixtures of transzeatin, dihydrozeatin, 1{double prime}-methyl-trans-zeatin riboside, and other unknown cytokinin-like substances. Corynebacterium fascians, produced cis-zeatin, isopentenyladenine and isopentenyladenosine. The technique is designed for qualitative rather than quantitative studies and allows ready identification of bacterial cytokinins. It may also have utility in the study of plant cytokinins if adequate incorporation of label into cytokinin precursor pools can be achieved.

  1. Method for rapid, high sensitivity tritiated water extraction

    SciTech Connect

    Failor, R.; Belovodsky, L.; Gaevoy, V.; Golubev, A.

    1997-04-20

    We have developed a thermal vacuum desorption process to rapidly extract water from environmental samples for tritium analysis. Thermal vacuum desorption allows for extraction of the moisture from the sample within a few hours in a form and quantity suitable for liquid scintillation counting and allows detection of tritium at the levels of <2 Bq/L of milk, <0.5 Bq/gm of vegetation, and < 0.5 Bq/gin of soil. We developed a prototype unit that can process batches of twenty or more samples within 24 hours. Early data shows that a high percentage of water is extracted reproducibly without enrichment or depletion of the tritium content. The quench coefficient of the extracted water is low allowing for accurate, direct liquid scintillation counting. Excellent comparison has been observed with results using freeze-dry lypholization as the water extraction method.

  2. Method for rapid base sequencing in DNA and RNA

    DOEpatents

    Jett, J.H.; Keller, R.A.; Martin, J.C.; Moyzis, R.K.; Ratliff, R.L.; Shera, E.B.; Stewart, C.C.

    1990-10-09

    A method is provided for the rapid base sequencing of DNA or RNA fragments wherein a single fragment of DNA or RNA is provided with identifiable bases and suspended in a moving flow stream. An exonuclease sequentially cleaves individual bases from the end of the suspended fragment. The moving flow stream maintains the cleaved bases in an orderly train for subsequent detection and identification. In a particular embodiment, individual bases forming the DNA or RNA fragments are individually tagged with a characteristic fluorescent dye. The train of bases is then excited to fluorescence with an output spectrum characteristic of the individual bases. Accordingly, the base sequence of the original DNA or RNA fragment can be reconstructed. 2 figs.

  3. Method for rapid base sequencing in DNA and RNA

    DOEpatents

    Jett, J.H.; Keller, R.A.; Martin, J.C.; Moyzis, R.K.; Ratliff, R.L.; Shera, E.B.; Stewart, C.C.

    1987-10-07

    A method is provided for the rapid base sequencing of DNA or RNA fragments wherein a single fragment of DNA or RNA is provided with identifiable bases and suspended in a moving flow stream. An exonuclease sequentially cleaves individual bases from the end of the suspended fragment. The moving flow stream maintains the cleaved bases in an orderly train for subsequent detection and identification. In a particular embodiment, individual bases forming the DNA or RNA fragments are individually tagged with a characteristic fluorescent dye. The train of bases is then excited to fluorescence with an output spectrum characteristic of the individual bases. Accordingly, the base sequence of the original DNA or RNA fragment can be reconstructed. 2 figs.

  4. Method for rapid base sequencing in DNA and RNA

    DOEpatents

    Jett, James H.; Keller, Richard A.; Martin, John C.; Moyzis, Robert K.; Ratliff, Robert L.; Shera, E. Brooks; Stewart, Carleton C.

    1990-01-01

    A method is provided for the rapid base sequencing of DNA or RNA fragments wherein a single fragment of DNA or RNA is provided with identifiable bases and suspended in a moving flow stream. An exonuclease sequentially cleaves individual bases from the end of the suspended fragment. The moving flow stream maintains the cleaved bases in an orderly train for subsequent detection and identification. In a particular embodiment, individual bases forming the DNA or RNA fragments are individually tagged with a characteristic fluorescent dye. The train of bases is then excited to fluorescence with an output spectrum characteristic of the individual bases. Accordingly, the base sequence of the original DNA or RNA fragment can be reconstructed.

  5. Rapid identification of clinically important bacteroides by coagglutination method.

    PubMed

    Lalitha, M K; Anandi, V; Elias, L; Kalpana, C R

    1991-03-01

    A coagglutination technique using indigenous reagents was applied for the rapid identification of Bacteroides fragilis and the black pigmented bacteroides group, using colony suspensions. All the 58 strains of B. fragilis and 42 strains of black pigmented bacteroides tested could be correctly identified by this method. The specificity of the coagglutination reagent was confirmed by the absence of cross reactivity with the related species of bacteroides, viz., B. distasonis, B. ovatus, B. vulgatus and B. thetaiotaomicron as well as other anaerobic and aerobic bacteria. A panel of four antisera against B. fragilis was required for correct identification of the strains tested, indicating the presence of multiple serotypes. On the other hand, all 42 strains of black pigmented bacteroides tested could be identified, using a single reagent as these strains appeared to have no antigenic type variants. PMID:1855827

  6. Rapid tooling method for soft customized removable oral appliances.

    PubMed

    Salmi, Mika; Tuomi, Jukka; Sirkkanen, Rauno; Ingman, Tuula; Mäkitie, Antti

    2012-01-01

    Traditionally oral appliances i.e. removable orthodontic appliances, bite splints and snoring / sleep apnea appliances are made with alginate impressions and wax registrations. Our aim was to describe the process of manufacturing customized oral appliances with a new technique i.e. rapid tooling method. The appliance should ideally be custom made to match the teeth. An orthodontic patient, scheduled for conventional orthodontic treatment, served as a study subject. After a precise clinical and radiographic examination, the approach was to digitize the patient's dental arches and then to correct them virtually by computer. Additive manufacturing was then used to fabricate a mould for a soft customized appliance. The mould was manufactured using stereolithography from Somos ProtoGen O-XT 18420 material. Casting material for the mould to obtain the final appliance was silicone. As a result we managed to create a customized soft orthodontic appliance. Also, the accuracy of the method was found to be adequate. Two versions of the described device were manufactured: one with small and one with moderate orthodontic force. The study person also gave information on the subjective patient adaptation aspects of the oral appliance.

  7. Rapid Method for Escherichia coli in the Cuyahoga River

    USGS Publications Warehouse

    Brady, Amie M.G.

    2007-01-01

    This study is a continuation of a previous U.S. Geological Survey (USGS) project in cooperation with the National Park Service at Cuyahoga Valley National Park in Brecksville, Ohio. A rapid (1-hour) method for detecting Escherichia coli (E. coli) in water was tested and compared to the standard (24-hour) method for determining E. coli concentrations. Environmental data were collected to determine turbidity, rainfall, and streamflow at the time of sampling. In the previous study (2004-5), data collected were used to develop predictive models to determine recreational water quality in the river at two sites within the park. Data collected during this continued study (2006) were used to test these models. At Jaite, a centrally located site within the park, the model correctly predicted exceedances or nonexceedances of the Ohio Environmental Protection Agency maximum for recreational water quality in 80 percent of samples. At Old Portage, a site near the upstream boundary of the park, the model correctly predicted recreational water quality in 58 percent of samples. All of the data collected in 2004-6 will be used to develop more accurate models for use in future studies. Analysis and discussion of model results are scheduled to be included in an upcoming USGS Scientific Investigations Report.

  8. Rapid and robust detection methods for poison and microbial contamination.

    PubMed

    Hoehl, Melanie M; Lu, Peter J; Sims, Peter A; Slocum, Alexander H

    2012-06-27

    Real-time on-site monitoring of analytes is currently in high demand for food contamination, water, medicines, and ingestible household products that were never tested appropriately. Here we introduce chemical methods for the rapid quantification of a wide range of chemical and microbial contaminations using a simple instrument. Within the testing procedure, we used a multichannel, multisample, UV-vis spectrophotometer/fluorometer that employs two frequencies of light simultaneously to interrogate the sample. We present new enzyme- and dye-based methods to detect (di)ethylene glycol in consumables above 0.1 wt % without interference and alcohols above 1 ppb. Using DNA intercalating dyes, we can detect a range of pathogens ( E. coli , Salmonella , V. Cholera, and a model for Malaria) in water, foods, and blood without background signal. We achieved universal scaling independent of pathogen size above 10(4) CFU/mL by taking advantage of the simultaneous measurement at multiple wavelengths. We can detect contaminants directly, without separation, purification, concentration, or incubation. Our chemistry is stable to ± 1% for >3 weeks without refrigeration, and measurements require <5 min.

  9. Rapid Tooling Method for Soft Customized Removable Oral Appliances

    PubMed Central

    Salmi, Mika; Tuomi, Jukka; Sirkkanen, Rauno; Ingman, Tuula; Mäkitie, Antti

    2012-01-01

    Traditionally oral appliances i.e. removable orthodontic appliances, bite splints and snoring / sleep apnea appliances are made with alginate impressions and wax registrations. Our aim was to describe the process of manufacturing customized oral appliances with a new technique i.e. rapid tooling method. The appliance should ideally be custom made to match the teeth. An orthodontic patient, scheduled for conventional orthodontic treatment, served as a study subject. After a precise clinical and radiographic examination, the approach was to digitize the patient’s dental arches and then to correct them virtually by computer. Additive manufacturing was then used to fabricate a mould for a soft customized appliance. The mould was manufactured using stereolithography from Somos ProtoGen O-XT 18420 material. Casting material for the mould to obtain the final appliance was silicone. As a result we managed to create a customized soft orthodontic appliance. Also, the accuracy of the method was found to be adequate. Two versions of the described device were manufactured: one with small and one with moderate orthodontic force. The study person also gave information on the subjective patient adaptation aspects of the oral appliance. PMID:22615719

  10. A rapid improved method for sexing embryo of water buffalo.

    PubMed

    Zoheir, K M A; Allam, A A

    2011-07-01

    The objective of the experiment of this paper is to develop and improve in the sexing method for preimplantation embryos of water buffalo (Bubalus bubalis) using loop-mediated isothermal amplification (LAMP) reaction. Embryo sexing has been recognized to control effectively the sex of offspring in the embryo transfer industry. A rapid and simple detection system was established by adding ethidium bromide (EB) or 5 μl of CuSO4 (3M) to the product of LAMP reaction. The result of these additions after 2 min was a color change and a precipitate. It could be employed as an alternative method in the detection of the reaction products in place of the time consuming electrophoresis or the turbidity meter. The in vitro produced buffalo embryos were divided into one to eight pieces using a microblade attached to a micromanipulator. The cell number in each piece was counted before sexing. Sexing of DNA samples extracted from one to five biopsies cells was performed by LAMP. After biopsy, the remaining part of the embryos was used to confirm the sex by polymerase chain reaction (PCR). Fifty buffalo embryos were used and the accuracy of sex prediction was 100% when the blastomeres dissociated from a morula exceeds three. In conclusion, the present procedure without turbidity meter and electrophoresis was reliable and applicable for sexing the water buffalo embryos.

  11. A Non-Radiative Transfer Approach to Radiometric Vicarious Calibration

    NASA Technical Reports Server (NTRS)

    Ryan, Robert; Holekamp, Kara; Pagnutti, Mary; Stanley, Thomas

    2007-01-01

    TOA (top-of-atmosphere) radiance from high-spatial-resolution satellite imagery systems is important for a wide variety of research and applications. Many research initiatives require data with absolute radiometric accuracy better than a few percent. The conversion of satellite digital numbers to radiance depends on accurate radiometric calibration. A common method for determining and validating radiometric calibrations is to rely upon vicarious calibration approaches. Historically, vicarious calibration methods use radiative transfer codes with ground-based atmosphere and surface reflectance or radiance inputs for estimating TOA radiance values. These TOA radiance values are compared against the satellite digital numbers to determine the radiometric calibration. However, the radiative transfer codes used depend on many assumptions about the aerosol properties and the atmospheric point spread function. A measurement-based atmospheric radiance estimation approach for high-spatial-resolution, multispectral, visible/near-infrared sensors is presented that eliminates the use of radiative transfer codes and many of the underlying assumptions. A comparison between the radiative transfer and non-radiative transfer approaches is made.

  12. Rapid preparation method for technetium-99m bicisate.

    PubMed

    Hung, J C; Chowdhury, S; Redfern, M G; Mahoney, D W

    1997-06-01

    The method currently recommended for the preparation of technetium-99m bicisate (99mTc-bicisate) requires a lengthy 30-min incubation at room temperature. The purpose of this study was to evaluate an alternative method to shorten the preparation time. 99mTc-bicisate was prepared with 3.7 GBq (100 mCi) 99mTc according to the manufacturer's instructions, except for the final incubation step, which was replaced with the microwave heating procedure. A standard thin-layer chromatography (TLC) method (i.e., Baker-Flex silica gel IB-F TLC plate with ethyl acetate as mobile phase) was used for the determination of the radiochemical purity (RCP) of 99mTc-bicisate. Our evaluation with different microwave heating processes (300 W with different heating times) demonstrated that as the microwave heating temperature was increased (i.e., 44 masculine-71 masculine C), an increased percentage of samples reached 95% within 5 min post preparation (n=58). The highest RCP value (i.e., 97.4%+/-0.5%, n=10) could be obtained immediately after an 8-s microwave heating time at 300 W (microwave temperature at 69 masculine C), and an average RCP value of 96.4%+/-1.3% (n=90) was maintained throughout the 24-h evaluation period. However, the trend seemed to reverse at higher microwave temperatures (i.e., 76 masculine-90 masculine C), which reconfirmed our initial findings that overheating had no benefit for the preparation of 99mTc-bicisate. To ensure that temperature was the only determining factor, a hot water incubator set at 69 masculine C was used (n=6). Similar RCP results were achieved. In conclusion, the use of a microwave oven at a low heat cycle provides a rapid and efficient way to prepare 99mTc-bicisate.

  13. Rapid simulation of spatial epidemics: a spectral method.

    PubMed

    Brand, Samuel P C; Tildesley, Michael J; Keeling, Matthew J

    2015-04-01

    Spatial structure and hence the spatial position of host populations plays a vital role in the spread of infection. In the majority of situations, it is only possible to predict the spatial spread of infection using simulation models, which can be computationally demanding especially for large population sizes. Here we develop an approximation method that vastly reduces this computational burden. We assume that the transmission rates between individuals or sub-populations are determined by a spatial transmission kernel. This kernel is assumed to be isotropic, such that the transmission rate is simply a function of the distance between susceptible and infectious individuals; as such this provides the ideal mechanism for modelling localised transmission in a spatial environment. We show that the spatial force of infection acting on all susceptibles can be represented as a spatial convolution between the transmission kernel and a spatially extended 'image' of the infection state. This representation allows the rapid calculation of stochastic rates of infection using fast-Fourier transform (FFT) routines, which greatly improves the computational efficiency of spatial simulations. We demonstrate the efficiency and accuracy of this fast spectral rate recalculation (FSR) method with two examples: an idealised scenario simulating an SIR-type epidemic outbreak amongst N habitats distributed across a two-dimensional plane; the spread of infection between US cattle farms, illustrating that the FSR method makes continental-scale outbreak forecasting feasible with desktop processing power. The latter model demonstrates which areas of the US are at consistently high risk for cattle-infections, although predictions of epidemic size are highly dependent on assumptions about the tail of the transmission kernel. PMID:25659478

  14. Rapid simulation of spatial epidemics: a spectral method.

    PubMed

    Brand, Samuel P C; Tildesley, Michael J; Keeling, Matthew J

    2015-04-01

    Spatial structure and hence the spatial position of host populations plays a vital role in the spread of infection. In the majority of situations, it is only possible to predict the spatial spread of infection using simulation models, which can be computationally demanding especially for large population sizes. Here we develop an approximation method that vastly reduces this computational burden. We assume that the transmission rates between individuals or sub-populations are determined by a spatial transmission kernel. This kernel is assumed to be isotropic, such that the transmission rate is simply a function of the distance between susceptible and infectious individuals; as such this provides the ideal mechanism for modelling localised transmission in a spatial environment. We show that the spatial force of infection acting on all susceptibles can be represented as a spatial convolution between the transmission kernel and a spatially extended 'image' of the infection state. This representation allows the rapid calculation of stochastic rates of infection using fast-Fourier transform (FFT) routines, which greatly improves the computational efficiency of spatial simulations. We demonstrate the efficiency and accuracy of this fast spectral rate recalculation (FSR) method with two examples: an idealised scenario simulating an SIR-type epidemic outbreak amongst N habitats distributed across a two-dimensional plane; the spread of infection between US cattle farms, illustrating that the FSR method makes continental-scale outbreak forecasting feasible with desktop processing power. The latter model demonstrates which areas of the US are at consistently high risk for cattle-infections, although predictions of epidemic size are highly dependent on assumptions about the tail of the transmission kernel.

  15. Radiometric Measurements and Data for Evaluating Photovoltaics

    SciTech Connect

    Myers, D. R.; Andreas, A.; Rymes, M.; Stoffel, T.; Reda, I.; Wilcox, S.; Treadwell, J.

    2000-01-01

    The National Renewable Energy Laboratory (NREL) Photovoltiac Radiometric Measurements Task ddresses the impact of solar and optical radiation on photovoltaic (PV) devices. The task maintains spectral and broadband calibration capability directly traceable to the National Institute of Standards and Technology (NIST) and the World Radiometric Reference (WRR) of the World Meteorological Organization (WMO).

  16. Field's stain--a rapid staining method for Acanthamoeba spp.

    PubMed

    Pirehma, M; Suresh, K; Sivanandam, S; Anuar, A K; Ramakrishnan, K; Kumar, G S

    1999-10-01

    Acanthamoeba sp. is a free-living amoeba known to cause chronic central nervous system infection or eye infection in humans. Many cases remain undetected for want of a good detection system. We report for the first time a rapid staining method to facilitate the identification of Acanthamoeba sp. using the modified Field's staining technique. A. castellanii, which was used in the present experiment, is maintained in our laboratory in mycological peptone medium (Gibco). The cultures were pooled together and smears were made on glass slides for staining purposes. Different types of stains such as Field's stain, modified Field's stain, Wright's stain, Giemsa stain, Ziehl-Neelsen stain, and trichrome stain were used to determine the best stain for the identification of this amoeba. The concentration of various stains and the duration of staining were varied to provide the best color and contrast for each stain. Acanthamoeba was also obtained from the brain of experimentally infected mice and was stained with various stains as mentioned above to determine the best stain for use in identifying the presence of this parasite in experimentally infected animals. The modified Field's stain gives a very good color contrast as compared with other stains. Furthermore, it takes only 20 s to be carried out using the least number of reagents, making it suitable for both laboratory and field use.

  17. VIIRS emissive band radiometric performance trending

    NASA Astrophysics Data System (ADS)

    Johnson, Eric; Ranshaw, Courtney

    2012-09-01

    The Visible/Infrared Imaging Radiometer Suite (VIIRS) is a key sensor on the Suomi National Polar-orbiting Partnership (NPP) satellite launched on October 28, 2011 into a polar orbit of 824 km nominal altitude. VIIRS collects radiometric and imagery data of the Earth's atmosphere, oceans, and land surfaces in 22 spectral bands spanning the visible and infrared spectrum from 0.4 to 12.5 μm. This paper summarizes the radiometric performance measured in the 7 VIIRS thermal emissive bands (3.7 to 12.5 μm), covering both pre-launch thermal-vacuum testing and early on-orbit characterizations. Radiometric characteristics trended include radiometric response and radiometric sensitivity (SNR/NEdT).

  18. Radiometrically accurate thermal imaging in the Landsat program

    NASA Astrophysics Data System (ADS)

    Lansing, Jack C., Jr.

    1988-01-01

    Methods of calibrating Landsat TM thermal IR data have been developed so that the residual error is reduced to 0.9 K (1 standard deviation). Methods for verifying the radiometric performance of TM on orbit and ground calibration methods are discussed. The preliminary design of the enhanced TM for Landsat-6 is considered. A technique for accurately reducing raw data from the Landsat-5 thermal band is described in detail.

  19. Small satellite radiometric measurement system

    SciTech Connect

    Weber, P.G.

    1992-01-01

    A critical need for the US Global Change Research Program is to provide continuous, well-calibrated radiometric data for the earth`s radiation budget. This paper describes a new, compact, relatively light-weight, adaptable radiometer which will provide both spectrally integrated measurements and data in selected spectral bands. The radiometer design is suitable for use on small satellites, aircraft, or remotely piloted aircraft (RPAs). An example of the implementation of this radiometer on a small satellite is given. Significant benefits derive from simultaneous measurements of specific narrow (in wavelength) spectral features; such data may be obtained by combining LARI with a compact spectrometer on the same platform. Well-chosen satellite orbits allow one to use data from other satellites (e.g. DMSP) to enhance the data product, or to provide superior coverage of specific locations. 23 refs.

  20. Dry rehydratable film method for rapid enumeration of coliforms in foods (3M Petrifilm Rapid Coliform Count plate): collaborative study.

    PubMed

    Kinneberg, Karen M; Lindberg, Kathryn G

    2002-01-01

    A rehydratable dry-film plating method for coliforms in foods, the 3M Petrifilm Rapid Coliform Count plate method, was compared with the U.S. Food and Drug Administration's Bacteriological Analytical Manual method for nondairy foods and the American Public Health Association's Standard Methods for the Examination of Dairy Products (SMEDP) method for dairy foods. Six food types, vanilla ice cream, cheddar cheese, fresh refrigerated uncooked pasta, wheat flour, prepared frozen macaroni and cheese, and frozen hash browns, were analyzed for coliforms by 11 collaborating laboratories. For each food product tested, the collaborators received 8 blind samples consisting of a control sample and 3 levels of inoculated sample, each in duplicate. The mean log counts for the methods were comparable. The repeatability and reproducibility variances of the Petrifilm Rapid Coliform Count method at 14 and 24 h were not significantly different from those of the standard methods.

  1. A new rapid method for rockfall energies and distances estimation

    NASA Astrophysics Data System (ADS)

    Giacomini, Anna; Ferrari, Federica; Thoeni, Klaus; Lambert, Cedric

    2016-04-01

    and distances at the base to block and slope features. The validation of the proposed approach was conducted by comparing predictions to experimental data collected in the field and gathered from the scientific literature. The method can be used for both natural and constructed slopes and easily extended to more complicated and articulated slope geometries. The study shows its great potential for a quick qualitative hazard assessment providing indication about impact energy and horizontal distance of the first impact at the base of a rock cliff. Nevertheless, its application cannot substitute a more detailed quantitative analysis required for site-specific design of mitigation measures. Acknowledgements The authors gratefully acknowledge the financial support of the Australian Coal Association Research Program (ACARP). References Dorren, L.K.A. (2003) A review of rockfall mechanics and modelling approaches, Progress in Physical Geography 27(1), 69-87. Agliardi, F., Crosta, G.B., Frattini, P. (2009) Integrating rockfall risk assessment and countermeasure design by 3D modelling techniques. Natural Hazards and Earth System Sciences 9(4), 1059-1073. Ferrari, F., Thoeni, K., Giacomini, A., Lambert, C. (2016) A rapid approach to estimate the rockfall energies and distances at the base of rock cliffs. Georisk, DOI: 10.1080/17499518.2016.1139729.

  2. Spectrally Tunable Sources for Advanced Radiometric Applications.

    PubMed

    Brown, S W; Rice, J P; Neira, J E; Johnson, B C; Jackson, J D

    2006-01-01

    A common radiometric platform for the development of application-specific metrics to quantify the performance of sensors and systems is described. Using this platform, sensor and system performance may be quantified in terms of the accuracy of measurements of standardized sets of source distributions. The prototype platform consists of spectrally programmable light sources that can generate complex spectral distributions in the ultraviolet, visible and short-wave infrared regions for radiometric, photometric and colorimetric applications. In essence, the programmable spectral source is a radiometric platform for advanced instrument characterization and calibration that can also serve as a basis for algorithm testing and instrument comparison.

  3. Petrifilm rapid S. aureus Count Plate method for rapid enumeration of Staphylococcus aureus in selected foods: collaborative study.

    PubMed

    Silbernagel, K M; Lindberg, K G

    2001-01-01

    A rehydratable dry-film plating method for Staphylococcus aureus in foods, the 3M Petrifilm Rapid S. aureus Count Plate method, was compared with AOAC Official Method 975.55 (Staphylococcus aureus in Foods). Nine foods-instant nonfat dried milk, dry seasoned vegetable coating, frozen hash browns, frozen cooked chicken patty, frozen ground raw pork, shredded cheddar cheese, fresh green beans, pasta filled with beef and cheese, and egg custard-were analyzed for S. aureus by 13 collaborating laboratories. For each food tested, the collaborators received 8 blind test samples consisting of a control sample and 3 levels of inoculated test sample, each in duplicate. The mean log counts for the methods were comparable for pasta filled with beef and cheese; frozen hash browns; cooked chicken patty; egg custard; frozen ground raw pork; and instant nonfat dried milk. The repeatability and reproducibility variances of the Petrifilm Rapid S. aureus Count Plate method were similar to those of the standard method.

  4. High speed radiometric measurements of IED detonation fireballs

    NASA Astrophysics Data System (ADS)

    Spidell, Matthew T.; Gordon, J. Motos; Pitz, Jeremey; Gross, Kevin C.; Perram, Glen P.

    2010-04-01

    Continuum emission is predominant in fireball spectral phenomena and in some demonstrated cases, fine detail in the temporal evolution of infrared spectral emissions can be used to estimate size and chemical composition of the device. Recent work indicates that a few narrow radiometric bands may reveal forensic information needed for the explosive discrimination and classification problem, representing an essential step in moving from "laboratory" measurements to a rugged, fieldable system. To explore phenomena not observable in previous experiments, a high speed (10μs resolution) radiometer with four channels spanning the infrared spectrum observed the detonation of nine home made explosive (HME) devices in the < 100lb class. Radiometric measurements indicate that the detonation fireball is well approximated as a single temperature blackbody at early time (0 < t <~ 3ms). The effective radius obtained from absolute intensity indicates fireball growth at supersonic velocity during this time. Peak fireball temperatures during this initial detonation range between 3000.3500K. The initial temperature decay with time (t <~ 10ms) can be described by a simple phenomenological model based on radiative cooling. After this rapid decay, temperature exhibits a small, steady increase with time (10 <~ t <~ 50ms) and peaking somewhere between 1000.1500K-likely the result of post-detonation combustion-before subsequent cooling back to ambient conditions . Radius derived from radiometric measurements can be described well (R2 > 0.98) using blast model functional forms, suggesting that energy release could be estimated from single-pixel radiometric detectors. Comparison of radiometer-derived fireball size with FLIR infrared imagery indicate the Planckian intensity size estimates are about a factor of two smaller than the physical extent of the fireball.

  5. A rapid method to improve protein detection by indirect ELISA

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The enzyme-linked immunosorbant assay (ELISA) is a rapid, high-throughput, quantitative immunoassay for the selective detection of target antigens. The general principle behind an ELISA is antibody mediated capture and detection of an antigen with a measureable substrate. Numerous incarnations of th...

  6. Statistical Methods for Rapid Aerothermal Analysis and Design Technology

    NASA Technical Reports Server (NTRS)

    Morgan, Carolyn; DePriest, Douglas; Thompson, Richard (Technical Monitor)

    2002-01-01

    The cost and safety goals for NASA's next generation of reusable launch vehicle (RLV) will require that rapid high-fidelity aerothermodynamic design tools be used early in the design cycle. To meet these requirements, it is desirable to establish statistical models that quantify and improve the accuracy, extend the applicability, and enable combined analyses using existing prediction tools. The research work was focused on establishing the suitable mathematical/statistical models for these purposes. It is anticipated that the resulting models can be incorporated into a software tool to provide rapid, variable-fidelity, aerothermal environments to predict heating along an arbitrary trajectory. This work will support development of an integrated design tool to perform automated thermal protection system (TPS) sizing and material selection.

  7. Comparison of rapid cultural methods for the detection of Salmonella species.

    PubMed

    Margot, H; Stephan, R; O'Mahony, E; Iversen, C

    2013-05-15

    Three newly developed rapid cultural methods (Rapid Salmonella, Precis™ Salmonella, IBISA Salmonella) for the detection of Salmonella spp. were compared to a reference method. All methods performed comparably on inclusivity/exclusivity testing. Similar limits of detection were observed for all methods with milk, cocoa and bouillon matrices. Some tea varieties appeared to disturb the normal color formation of all selective agars tested.

  8. Radiometric ages of Tennessee rocks

    SciTech Connect

    Corgan, J.X.; Bradley, M.W.

    1983-01-01

    This report compiles and summarizes all known radiometric age determinations based on bedrock samples from Tennessee. Data are available for 89 sites. Specimens record both igneous and metamorphic events ranging in age from 1.3 billion to 220 million years before present. Tennessee rocks have been dated by techniques that measure the results of four different kinds of radioactive decay: thorium-lead, uranium-lead, potassium-argon, and rubidium-strontium. Most determinations meet normal scientific standards for reliability. This study focuses on clarifying published data by bringing together geochemical, geological, and geographical information for each site. In addition to data on the age of bedrock samples, this study presents basic information on the ages of meteorites from Tennessee and on the ages of sediments and organic remains from Ice Age fossil sites and more recent archeological sites. While bedrock ages are the thrust of the report, other kinds of absolute age determinations are briefly discussed. 98 references, 11 figures, 3 tables.

  9. LANDSAT-4 multispectral scanner (MSS) subsystem radiometric characterization

    NASA Technical Reports Server (NTRS)

    Alford, W. (Editor); Barker, J. (Editor); Clark, B. P.; Dasgupta, R.

    1983-01-01

    The multispectral band scanner (mass) and its spectral characteristics are described and methods are given for relating video digital levels on computer compatible tapes to radiance into the sensor. Topics covered include prelaunch calibration procedures and postlaunch radiometric processng. Examples of current data resident on the MSS image processing system are included. The MSS on LANDSAT 4 is compared with the scanners on earlier LANDSAT satellites.

  10. Radiometric and signal-to-noise ratio properties of multiplex dispersive spectrometry

    SciTech Connect

    Barducci, Alessandro; Guzzi, Donatella; Lastri, Cinzia; Nardino, Vanni; Marcoionni, Paolo; Pippi, Ivan

    2010-10-01

    Recent theoretical investigations have shown important radiometric disadvantages of interferential multiplexing in Fourier transform spectrometry that apparently can be applied even to coded aperture spectrometers. We have reexamined the methods of noninterferential multiplexing in order to assess their signal-to-noise ratio (SNR) performance, relying on a theoretical modeling of the multiplexed signals. We are able to show that quite similar SNR and radiometric disadvantages affect multiplex dispersive spectrometry. The effect of noise on spectral estimations is discussed.

  11. Radiometric rectification - Toward a common radiometric response among multidate, multisensor images

    NASA Technical Reports Server (NTRS)

    Hall, F. G.; Strebel, D. E.; Nickeson, J. E.; Goetz, S. J.

    1991-01-01

    A method is developed for relating scene digital counts among several images of the same scene by identifying radiometric control sets with mean reflectances that are basically constant. The average digital-count values of the control sets are utilized to compute linear transforms that relate digital count values between images. Two Landsat TM images are studied by means of the technique using simulations of a wide range of atmospheric conditions. In the visible and near-IR bands the algorithm effectively adjusts the surface reflectance for the effects of relative atmospheric differences to within 1 percent. The proposed method is found to be an effective relative correction procedure that can be used when atmospheric optical-depth data and calibration coefficients are not available.

  12. Rapid method for isolating targeted organic chemicals from biological matrices

    SciTech Connect

    Caton, J.E.; Griest, W.H.; Watson, A.P.; Buchanan, M.V. ); Hazen, K.H. )

    1994-01-01

    The initial development is reported for a novel countercurrent filtration/dialysis and solid phase extractant system for the rapid isolation of low molecular weight target compounds from biological media. Except for piperazine (a highly water-soluble drug), recoveries of 50 - 95% were achieved for chemical warfare agent simulants and anthelmintic drugs extracted from meat, grain, or milk. The results suggest the potential for broad applications to complex samples such as environmental media and physiological specimens which traditionally require extensive fractionation prior to analysis.

  13. A rapid method for hydraulic profiling in unconsolidated formations

    USGS Publications Warehouse

    Dietrich, P.; Butler, J.J.; Faiss, K.

    2008-01-01

    Information on vertical variations in hydraulic conductivity (K) can often shed much light on how a contaminant will move in the subsurface. The direct-push injection logger has been developed to rapidly obtain such information in shallow unconsolidated settings. This small-diameter tool consists of a short screen located just behind a drive point. The tool is advanced into the subsurface while water is injected through the screen to keep it clear. Upon reaching a depth at which information about K is desired, advancement ceases and the injection rate and pressure are measured on the land surface. The rate and pressure values are used in a ratio that serves as a proxy for K. A vertical profile of this ratio can be transformed into a K profile through regressions with K estimates determined using other techniques. The viability of the approach was assessed at an extensively studied field site in eastern Germany. The assessment demonstrated that this tool can rapidly identify zones that may serve as conduits for or barriers to contaminant movement. ?? 2007 The Author(s).

  14. A rapid method to estimate Westergren sedimentation rates.

    PubMed

    Alexy, Tamas; Pais, Eszter; Meiselman, Herbert J

    2009-09-01

    The erythrocyte sedimentation rate (ESR) is a nonspecific but simple and inexpensive test that was introduced into medical practice in 1897. Although it is commonly utilized in the diagnosis and follow-up of various clinical conditions, ESR has several limitations including the required 60 min settling time for the test. Herein we introduce a novel use for a commercially available computerized tube viscometer that allows the accurate prediction of human Westergren ESR rates in as little as 4 min. Owing to an initial pressure gradient, blood moves between two vertical tubes through a horizontal small-bore tube and the top of the red blood cell (RBC) column in each vertical tube is monitored continuously with an accuracy of 0.083 mm. Using data from the final minute of a blood viscosity measurement, a sedimentation index (SI) was calculated and correlated with results from the conventional Westergren ESR test. To date, samples from 119 human subjects have been studied and our results indicate a strong correlation between SI and ESR values (R(2)=0.92). In addition, we found a close association between SI and RBC aggregation indices as determined by an automated RBC aggregometer (R(2)=0.71). Determining SI on human blood is rapid, requires no special training and has minimal biohazard risk, thus allowing physicians to rapidly screen for individuals with elevated ESR and to monitor therapeutic responses.

  15. [Development of sample pretreatment techniques-rapid detection coupling methods for food security analysis].

    PubMed

    Huang, Yichun; Ding, Weiwei; Zhang, Zhuomin; Li, Gongke

    2013-07-01

    This paper summarizes the recent developments of the rapid detection methods for food security, such as sensors, optical techniques, portable spectral analysis, enzyme-linked immunosorbent assay, portable gas chromatograph, etc. Additionally, the applications of these rapid detection methods coupled with sample pretreatment techniques in real food security analysis are reviewed. The coupling technique has the potential to provide references to establish the selective, precise and quantitative rapid detection methods in food security analysis.

  16. Experimental Research on Passive Millimeter Wave Radiometric Stealth Technology of Metal Objects

    NASA Astrophysics Data System (ADS)

    Zhang, Guangfeng; Lou, Guowei; Li, Xingguo

    2012-12-01

    Working all day and all weather, a passive millimeter wave radiometer (PMMW) can be widely used in civil and military affairs. It can get some specific information about the material characteristics different from radar and infrared detectors. On basis of the radiometric operating range equation, the radiation cross section and stealth effect of metal objects are presented for the PMMW near-sensing application. The measurement experiments of metal solid models adopts 3 mm band Dicke radiometer with the outdoor calibration system. The sky temperature and other different surface metal objects are also measured as the contrastive experiments. The results show the radiometric temperature contrasts of solid models have remarkable difference in the bare and coated conditions, and the radiometric operating range can decrease to 60.8 %. In addition, the PMMW stealth methods through different surface treatment respectively reduce the radiometric antenna temperature contrast in some degree.

  17. Radiometric-microbiologic assay fo vitamin B-6: analysis of plasma samples

    SciTech Connect

    Guilarte, T.R.; McIntyre, P.A.

    1981-11-01

    A radiometric microbiologic assay for the analysis of vitamin B-6 in plasma was developed. The method is based on the measurement of 14CO2 generated from the metabolism of DL-l-14C-valine (L-l-14C-valine) by Kloeckera brevis. The assay is specific for the biologically active forms of the vitamin, that is, pyridoxine, pyridoxal and pyridoxamine, and their respective phosphorylated forms. The biologically inert vitamin B-6 metabolite (4-pyridoxic acid) did not generate a response at concentrations tested. The radiometric technique was shown to be sensitive to the 1 nanogram level. Reproducibility and recovery studies gave good results. Fifteen plasma samples were assayed using the radiometric and turbidimetric techniques. The correlation coefficient was r . 0.98. Turbid material or precipitated debris did not interfere with the radiometric microbiologic assay, thus allowing for simplification of assay procedure.

  18. Radiometric and Spatial Characterization of High-Spatial Resolution Sensors

    NASA Technical Reports Server (NTRS)

    Thome, Kurtis; Zanoni, Vicki (Technical Monitor)

    2002-01-01

    The development and improvement of commercial hyperspatial sensors in recent years has increased the breadth of information that can be retrieved from spaceborne and airborne imagery. NASA, through it's Scientific Data Purchases, has successfully provided such data sets to its user community. A key element to the usefulness of these data are an understanding of the radiometric and spatial response quality of the imagery. This proposal seeks funding to examine the absolute radiometric calibration of the Ikonos sensor operated by Space Imaging and the recently-launched Quickbird sensor from DigitalGlobe. In addition, we propose to evaluate the spatial response of the two sensors. The proposed methods rely on well-understood, ground-based targets that have been used by the University of Arizona for more than a decade.

  19. Method for rapid screening of pesticide mineralization in soil.

    PubMed

    Rasmussen, Jim; Jensen, Pia Haugaard; Holm, Peter E; Jacobsen, Ole Stig

    2004-05-01

    A method has been developed for the analysis of (14)CO(2) evolution from the mineralization of (14)C-labelled organic compounds in soil samples. The new method is less space demanding and substantially cuts down laborious manual work compared to the traditional incubation bottle method used. Furthermore, the use of scintillation cocktail is largely reduced with the new method. In the new method, (14)CO(2) is trapped in filter paper held in the lid of a 20 ml glass vial by surface tension. The trapping solution used is Ca(OH)(2), which fixates CO(2) in the filter paper and the analysis of trapped (14)CO(2) is done using the Cyclone trade mark Storage Phosphor system. The lids are placed in a 32 well holder and exposed to a phosphor screen prior to scanning in a Cyclone trade mark scanner. The new filter method has been tested and compared to results obtained using the traditional method. The results show good agreement but due to a smaller capacity for CO(2) with the filter method compared to the traditional method, the interval between sampling has to be shorter using the filter method when the CO(2) development is high. The detection limits for the filter method is higher compared to the traditional method. With the filter method, the level of radioactivity has to exceed 300 dpm before detection is possible, while the same limit for the traditional method is around 30 dpm. On the other hand, the gas trapping faster and the efficiency is higher with the filter method. PMID:15063054

  20. Rapid method for measuring rotenone in water at piscicidal concentrations

    USGS Publications Warehouse

    Dawson, V.K.; Harman, P.D.; Schultz, D.P.; Allen, J.L.

    1983-01-01

    A high-performance liquid chromatography (HPLC) procedure that is rapid, specific, and sensitive (limit of detection <0.005 mg/liter) was developed for monitoring application and degradation rates of rotenone. For analysis, a water sample is buffered to pH 5 and injected through a Sep Pak(R) C18 disposable cartridge. The cartridge adsorbs and retains the rotenone which then can be eluted quantitatively from the cartridge with a small volume of methanol. This step effectively concentrates the sample and provides sample cleanup. The methanol extract is analyzed directly by HPLC on an MCH 10 reverse-phase column; methanol: water (75:25, volume : volume) is the mobile phase and flow rate is 1.5 ml/minute. The rotenone is detected by ultraviolet spectrophotometry at a wavelength of 295 nm.

  1. [Radiometric calibration of LCTF-based multispectral area CCD camera].

    PubMed

    Du, Li-Li; Yi, Wei-Ning; Zhang, Dong-Ying; Huang, Hong-Lian; Qiao, Yan-Li; Zhang, Xie

    2011-01-01

    Multispectral area CCD camera based on liquid crystal tunable filter (LCTF) is a new spectral imaging system, which could record image of one wavelength on the area CCD by utilizing electrically controlled birefringence of liquid-crystal and interference principle of polarized light. Because of the special working principle of LCTF and frame transfer area CCD, the existing radiometric calibration method can not meet the precision need of remote sensing application if it is used for LCTF-camera. An improved radiometric calibration method is proposed, in which the camera performance test and calibration experiment are carried out relying on the devices of integrating sphere and standard detector, and the absolute calibration coefficient is calculated via correcting frame transfer smear and improving data process algorithm. Then the validity of the laboratory calibration coefficient is checked by a field validation experiment. Experimental result indicates that the calibration coefficient is valid, and the radiation information on the ground could be accurately inverted from the calibrated image data. With the resolution of radiometric calibration of LCTF-camera and the improvement of calibration precision, the application field of the image data acquired by the camera would be extended effectively.

  2. Transportable high sensitivity small sample radiometric calorimeter

    SciTech Connect

    Wetzel, J.R.; Biddle, R.S.; Cordova, B.S.; Sampson, T.E.; Dye, H.R.; McDow, J.G.

    1998-12-31

    A new small-sample, high-sensitivity transportable radiometric calorimeter, which can be operated in different modes, contains an electrical calibration method, and can be used to develop secondary standards, will be described in this presentation. The data taken from preliminary tests will be presented to indicate the precision and accuracy of the instrument. The calorimeter and temperature-controlled bath, at present, require only a 30-in. by 20-in. tabletop area. The calorimeter is operated from a laptop computer system using unique measurement module capable of monitoring all necessary calorimeter signals. The calorimeter can be operated in the normal calorimeter equilibration mode, as a comparison instrument, using twin chambers and an external electrical calibration method. The sample chamber is 0.75 in (1.9 cm) in diameter by 2.5 in. (6.35 cm) long. This size will accommodate most {sup 238}Pu heat standards manufactured in the past. The power range runs from 0.001 W to <20 W. The high end is only limited by sample size.

  3. Rapid method for sampling metals for materials identification

    NASA Technical Reports Server (NTRS)

    Higgins, L. E.

    1971-01-01

    Nondamaging process similar to electrochemical machining is useful in obtaining metal samples from places inaccessible to conventional sampling methods or where methods would be hazardous or contaminating to specimens. Process applies to industries where metals or metal alloys play a vital role.

  4. Evaluating an alternative method for rapid urinary creatinine determination

    EPA Science Inventory

    Creatinine (CR) is an endogenously-produced chemical routinely assayed in urine specimens to assess kidney function, sample dilution. The industry-standard method for CR determination, known as the kinetic Jaffe (KJ) method, relies on an exponential rate of a colorimetric change,...

  5. A rapid method of determining BOD in coking plant wastewater

    SciTech Connect

    Papkov, G.I.; Stanetskaya, A.M.

    1982-02-01

    The method described is a modification of the conventional method. Analysis is carried out at a temperature of 34 C, the biomass is introduced separately into the flask, and the analysis time for total BOD determination is reduced from 20 to 8-9 days. (3 refs.)

  6. A rapid method of reconstituting human erythrocyte sugar transport proteins.

    PubMed

    Carruthers, A; Melchior, D L

    1984-06-01

    A rapid reconstitution procedure for human erythrocyte hexose transfer activity is described. The procedure (reverse-phase evaporation) avoids exposure of the isolated proteins to detergent, organic solvent, sonication, or freeze-thaw steps during insertion into synthetic membranes and may be effected within 15 min. The so-formed vesicles are unilamellar structures with a large encapsulated volume, narrow size range, and low passive permeabilities. Contamination by carry-through of endogenous (red cell) lipids is less than 1%. Reconstituted hexose transfer activity was examined by using unfractionated proteins (bands 3, 4.5, and 6) and purified proteins (bands 4.5 and 3). With unfractionated proteins, hexose transport activity is low [0.34 mumol X (mg of protein)-1 X min-1], is inhibited by cytochalasin B, and increases monotonically with protein concentration. Kinetic analysis indicates that Vmax values for both influx and efflux of D-glucose are identical. Reconstitution of the cytochalasin B binding protein (band 4.5) results in hexose transport with high specific activity [5 mumol X (mg of protein)-1 X min-1] and symmetry in transfer kinetics. Band 3 proteins also appear to mediate cytochalasin B sensitive D-glucose transport activity.

  7. RAPID SEPARATION METHOD FOR 237NP AND PU ISOTOPES IN LARGE SOIL SAMPLES

    SciTech Connect

    Maxwell, S.; Culligan, B.; Noyes, G.

    2010-07-26

    A new rapid method for the determination of {sup 237}Np and Pu isotopes in soil and sediment samples has been developed at the Savannah River Site Environmental Lab (Aiken, SC, USA) that can be used for large soil samples. The new soil method utilizes an acid leaching method, iron/titanium hydroxide precipitation, a lanthanum fluoride soil matrix removal step, and a rapid column separation process with TEVA Resin. The large soil matrix is removed easily and rapidly using this two simple precipitations with high chemical recoveries and effective removal of interferences. Vacuum box technology and rapid flow rates are used to reduce analytical time.

  8. Rapid Methods for the Detection of General Fecal Indicators

    EPA Science Inventory

    Specified that EPA should develop: appropriate and effective indicators for improving detection in a timely manner of pathogens in coastal waters appropriate, accurate, expeditious and cost-effective methods for the timely detection of pathogens in coastal waters

  9. A rapid method for the determination of lithium transference numbers

    SciTech Connect

    Zawodzinski, T.A. Jr.; Dai, H.; Sanderson, S.; Davey, J.; Uribe, F.

    1997-05-01

    Lithium ion-conducting polymer electrolytes are of increasing interest for use in lithium-polymer batteries. Lithium transference numbers, the net fraction of current carried by lithium in a cell, are key figures of merit for potential lithium battery electrolytes. The authors describe the Electrophoretic NMR (ENMR) method for the determination of lithium ion transference numbers (T{sub Li}). The work presented is a proof-of-concept of the application of the ENMR method to lithium ion transference measurements for several different lithium salts in gelled electrolytes. The NMR method allows accurate determination of T{sub Li} values, as indicated by the similarity of T{sub Li} in the gelled electrolytes to those in aqueous electrolyte solutions at low salt concentration. Based on calculated tradeoffs of various experimental parameters, they also discuss some conclusions concerning the range of applicability of the method to other electrolytes with lower lithium mobility.

  10. Rapid MRI method for mapping the longitudinal relaxation time

    NASA Astrophysics Data System (ADS)

    Hsu, Jung-Jiin; Glover, Gary H.

    2006-07-01

    A novel method for mapping the longitudinal relaxation time in a clinically acceptable time is developed based on a recent proposal [J.-J. Hsu, I.J. Lowe, Spin-lattice relaxation and a fast T1-map acquisition method in MRI with transient-state magnetization, J. Magn. Reson. 169 (2004) 270-278] and the speed of the spiral pulse sequence. The method acquires multiple curve-fitting samples with one RF pulse train. It does not require RF pulses of specific flip angles (e.g., 90° or 180°), nor are the long recovery waiting time and the measurement of the magnetization at thermal equilibrium needed. Given the value of the flip angle, the curve fitting is semi-logarithmic and not computationally intensive. On a heterogeneous phantom, the average percentage difference between measurements of the present method and those of an inversion-recovery method is below 2.7%. In mapping the human brain, the present method, for example, can obtain four curve-fitting samples for five 128 × 128 slices in less than 3.2 s and the results are in agreement with other studies in the literature.

  11. Methods for LWIR Radiometric Calibration and Characterization

    NASA Technical Reports Server (NTRS)

    Ryan, Robert; Pagnutti, Mary; Zanoni, Vicki; Harrington, Gary; Howell, Dane; Stewart, Randy

    2002-01-01

    The utility of a thermal remote sensing system increases with it's ability to retrieve surface temperature or radiance accurately. The radiometer measures the water surface radiant temperature. Combining these measurements with atmospheric pressure, temperature, and water vapor profiles, a top-of-the-atmosphere tradiance estimate can be caluclated with a radiativer transfer code to compare to trhe sensor's output. A novel approach has been developed using an uncooled infrared camera mounted on a boom, to quantify buoy effects.

  12. User's guide to the Radiometric Age Data Bank (RADB)

    USGS Publications Warehouse

    Zartman, Robert Eugene; Cole, James C.; Marvin, Richard F.

    1976-01-01

    The Radiometric Age Data Bank (RADB) has been established by the U.S. Geological Survey, as a means for collecting and organizing the estimated 100,000 radiometric ages presently published for the United States. RADB has been constructed such that a complete sample description (location, rock type, etc.), literature citation, and extensive analytical data are linked to form an independent record for each sample reported in a published work. Analytical data pertinent to the potassium-argon, rubidium-strontium, uranium-thorium-lead, lead-alpha, and fission-track methods can be accommodated, singly or in combinations, for each record. Data processing is achieved using the GIPSY program (University of Oklahoma) which maintains the data file and builds, updates, searches, and prints the records using simple yet versatile command statements. Searching and selecting records is accomplished by specifying the presence, absence, or (numeric or alphabetic) value of any element of information in the data bank, and these specifications can be logically linked to develop sophisticated searching strategies. Output is available in the form of complete data records, abbreviated tests, or columnar tabulations. Samples of data-reporting forms, GIPSY command statements, output formats, and data records are presented to illustrate the comprehensive nature and versatility of the Radiometric Age Data Bank.

  13. Radiometric dating of the Siloam Tunnel, Jerusalem.

    PubMed

    Frumkin, Amos; Shimron, Aryeh; Rosenbaum, Jeff

    2003-09-11

    The historical credibility of texts from the Bible is often debated when compared with Iron Age archaeological finds (refs. 1, 2 and references therein). Modern scientific methods may, in principle, be used to independently date structures that seem to be mentioned in the biblical text, to evaluate its historical authenticity. In reality, however, this approach is extremely difficult because of poor archaeological preservation, uncertainty in identification, scarcity of datable materials, and restricted scientific access into well-identified worship sites. Because of these problems, no well-identified Biblical structure has been radiometrically dated until now. Here we report radiocarbon and U-Th dating of the Siloam Tunnel, proving its Iron Age II date; we conclude that the Biblical text presents an accurate historic record of the Siloam Tunnel's construction. Being one of the longest ancient water tunnels lacking intermediate shafts, dating the Siloam Tunnel is a key to determining where and when this technological breakthrough took place. Siloam Tunnel dating also refutes a claim that the tunnel was constructed in the second century bc.

  14. Success of Rapid Continuous Thermal Demagnetization When Conventional Methods Failed

    NASA Astrophysics Data System (ADS)

    Coe, R. S.; Le Goff, M.

    2014-12-01

    Conventional stepwise thermal demagnetization of samples spanning a basalt flow erupted during a polarity transition at Steens Mountain, Oregon yielded scattered directions of high-temperature remanence, whereas the results of continuous thermal demagnetization cluster convincingly among the characteristic directions of the next several flows below. The continuous demagnetization was performed using the Triaxe1, a 3-axis vibrating sample magnetometer in which the directions of ~1 cm3 sub-samples were measured repeatedly as temperature increased during heated from 20 to 500-550°C in only 12-13 minutes. The demagnetization trajectories suggest that normal-polarity secondary magnetization, acquired both at room temperature in today's polarity chron and during modest reheating in a normal field during cooling of the overlying flow, was responsible for the failure of conventional thermal demagnetization. Our favored explanation is that alteration during ordinary thermal demagnetization raised the blocking temperature while preserving the direction of the overprint, thereby masking the primary component. The rapid heating (~40°C/min) during continuous demagnetization appears to have been fast enough to demagnetize the normal overprint before this masking could happen. Thermomagnetic cycles exhibit significant irreversibility starting around 300°C, both in air and in argon. Changes in room-temperature hysteresis parameters after heating in air to temperature T also start to change around T=300°C. Titanomagnetite of composition TM65-70, partially oxidized to titanomaghemite, plus a minor low-Ti, oxyexsolved phase are observed in thin section and inferred from thermomagnetic curves. Thus, inversion of secondary titanomaghemite that carries a normal overprint could be the masking mechanism. The failure of AF demagnetization, on the other hand, we attribute to overlapping coercivity spectra of primary and secondary magnetization. 1Le Goff and Gallet, 2004, Earth Planet

  15. A multi-channel radiometric profiler of temperature, humidity and cloud liquid.

    SciTech Connect

    Ware, R.; Carpenter, R.; Guldner, J.; Liljegren, J.; Nehrkorn, T.; Solheim, F.; Vandenberghe, F.; Environmental Research; Radiometrics Corp.; Univ. Corp. for Atmospheric Research; Weather Decision Technologies Inc.; Atmospheric and Environmental Research Inc.; National Center for Atmospheric Research

    2003-07-31

    A microwave radiometer is described that provides continuous thermodynamic (temperature, water vapor, and moisture) soundings during clear and cloudy conditions. The radiometric profiler observes radiation intensity at 12 microwave frequencies, along with zenith infrared and surface meteorological measurements. Historical radiosonde and neural network or regression methods are used for profile retrieval. We compare radiometric, radiosonde, and forecast soundings and evaluate the accuracy of radiometric temperature and water vapor soundings on the basis of statistical comparison with radiosonde soundings. We find that radiometric soundings are equivalent in accuracy to radiosonde soundings when used in numerical weather forecasting. A case study is described that demonstrates improved fog forecasting on the basis of variational assimilation of radiometric soundings. The accuracy of radiometric cloud liquid soundings is evaluated by comparison with cloud liquid sensors carried by radiosondes. Accurate high-resolution three-dimensional water vapor and wind analysis is described on the basis of assimilation of simulated thermodynamic and wind soundings along with GPS slant delays. Examples of mobile thermodynamic and wind profilers are shown. Thermodynamic profiling, particularly when combined with wind profiling and slant GPS, provides continuous atmospheric soundings for improved weather and dispersion forecasting.

  16. Rapid method for interconversion of binary and decimal numbers

    NASA Technical Reports Server (NTRS)

    Lim, R. S.

    1970-01-01

    Decoding tree consisting of 40-bit semiconductor read-only memories interconverts binary and decimal numbers 50 to 100 times faster than current methods. Decimal-to-binary conversion algorithm is based on a divided-by-2 iterative equation, binary-to-decimal conversion algorithm utilizes multiplied-by-2 iterative equation.

  17. [Methods for the rapid preparation of paraffin blocks].

    PubMed

    Shmurun, R I

    1992-01-01

    Two accelerated chloroform-paraffin processings of materials with the use of ultrasound (US) and microwave (MW) irradiation in the stove "Electronica" as well as a combined method with US- and MW-irradiation are proposed to shorten drastically the duration of the prehistologic processing.

  18. Optimal control methods for rapidly time-varying Hamiltonians

    SciTech Connect

    Motzoi, F.; Merkel, S. T.; Wilhelm, F. K.; Gambetta, J. M.

    2011-08-15

    In this article, we develop a numerical method to find optimal control pulses that accounts for the separation of timescales between the variation of the input control fields and the applied Hamiltonian. In traditional numerical optimization methods, these timescales are treated as being the same. While this approximation has had much success, in applications where the input controls are filtered substantially or mixed with a fast carrier, the resulting optimized pulses have little relation to the applied physical fields. Our technique remains numerically efficient in that the dimension of our search space is only dependent on the variation of the input control fields, while our simulation of the quantum evolution is accurate on the timescale of the fast variation in the applied Hamiltonian.

  19. Ambient methods and apparatus for rapid laser trace constituent analysis

    DOEpatents

    Snyder, Stuart C.; Partin, Judy K.; Grandy, Jon D.; Jeffery, Charles L.

    2002-01-01

    A method and apparatus are disclosed for measuring trace amounts of constituents in samples by using laser induced breakdown spectroscopy and laser induced fluorescence under ambient conditions. The laser induced fluorescence is performed at a selected wavelength corresponding to an absorption state of a selected trace constituent. The intensity value of the emission decay signal which is generated by the trace constituent is compared to calibrated emission intensity decay values to determine the amount of trace constituent present.

  20. Evaluation of the Fully Automated BACTEC MGIT 960 System for Testing Susceptibility of Mycobacterium tuberculosis to Pyrazinamide, Streptomycin, Isoniazid, Rifampin, and Ethambutol and Comparison with the Radiometric BACTEC 460TB Method

    PubMed Central

    Scarparo, Claudio; Ricordi, Paolo; Ruggiero, Giuliana; Piccoli, Paola

    2004-01-01

    The performance of the fully automated BACTEC MGIT 960 (M960) system for the testing of Mycobacterium tuberculosis susceptibility to streptomycin (SM), isoniazid (INH), rifampin (RMP), ethambutol (EMB), and pyrazinamide (PZA) was evaluated with 100 clinical isolates and compared to that of the radiometric BACTEC 460TB (B460) system. The agar proportion method and the B460 system were used as reference methods to resolve the discordant results for SM, INH, RMP, and EMB (a combination known as SIRE) and PZA, respectively. The overall agreements were 96.3% for SIRE and 92% for PZA. For SIRE, a total of 26 discrepancies were found and were resolved in favor of the M960 system in 8 cases and in favor of the B460 system in 18 cases. The M960 system produced 8 very major errors (VME) and 10 major errors (ME), while the B460 system showed 4 VME and 4 ME. No statistically significant differences were found. Both systems exhibited excellent performance, but a higher number of VME was observed with the M960 system at the critical concentrations of EMB and SM. For PZA, a total of eight discrepancies were observed and were resolved in favor of the M960 system in one case and in favor of the B460 system in seven cases; no statistically significant differences were found. The M960 system showed four VME and three ME. The mean times to report overall PZA results and resistant results were 8.2 and 9.8 days, respectively, for the M960 system and 7.4 and 8.1 days, respectively, for the B460 system. Statistically significant differences were found. The mean times to report SIRE results were 8.3 days for the M960 system and 8.2 days for the B460 system. No statistically significant differences were found. Twelve strains tested for SIRE susceptibility and seven strains tested for PZA susceptibility had been reprocessed because of contamination. In conclusion, the M960 system can represent a valid alternative to the B460 for M. tuberculosis susceptibility testing; however, the frequent

  1. [Development of rapid methods for quantitative analysis of proteolytic reactions].

    PubMed

    Beloivan, O A; Tsvetkova, M N; Bubriak, O A

    2002-01-01

    The approaches for development of express methods for quantitative control of proteolytic reactions are discussed. Recently, these reactions have taken on special significance for revealing many important problems of theoretical and practical medicine and biology as well as for technological, pharmacological and ecological monitoring. Traditional methods can be improved both by use of immobilized enzymes and substrates, and on the basis of combination of various classic biochemical and immunological approaches. The synthesis of substrates with specified properties allows new methods to be realized for the study of the proteinase activity and kinetic characteristics of the corresponding reactions both in vitro and in vivo. An application of biosensor technology is promising trend since it allows the analysis time and cost to be saved, the direct interaction between enzymes and their inhibitors and activators to be studied in a real time scale, the quantitative measurements to be performed both in liquids and in the air. Besides, biosensor technique is well compatible with computer data processing. PMID:12924013

  2. Azimuthal radiometric temperature measurements of wheat canopies

    NASA Technical Reports Server (NTRS)

    Kimes, D. S.

    1981-01-01

    The effects of azimuthal view angle on the radiometric temperature of wheat canopies at various stages of development are investigated. Measurements of plant height, total leaf area index, green leaf area index and Feeks growth stage together with infrared radiometric temperature measurements at 12 azimuth intervals with respect to solar azimuth and at different solar zenith angles were obtained for four wheat canopies at various heights. Results reveal a difference on the order of 2 C between the temperatures measured at azimuths of 0 and 180 deg under calm wind conditions, which is attributed to the time-dependent transfer of heat between canopy component surfaces. The azimuthal dependence must thus be taken into account in the determination of radiometric temperatures.

  3. THEMATIC MAPPER: DETAILED RADIOMETRIC AND GEOMETRIC CHARACTERISTICS.

    USGS Publications Warehouse

    Kieffer, Hugh

    1983-01-01

    The paper is in abstract form. It discusses those radiometric characteristics of the Landsat 4 Thematic Mapper (TM) that can be established without absolute calibration or spectral data. Subscenes of radiometrically raw data (B-data) were examined on an individual detector basis; areas of uniform radiance were used to characterize subtle radiometric differences and noise problems. The effective resolution in radiance is degraded by about a factor of two by irregular width of the digital levels. Several detectors have a change of gain with a period of several scans, the largest effect is about 4%. The geometric fidelity of the GSFC filmwriter used for Thematic Mapper (TM) images was assessed by measurement with accuracy better than three micrometers of a test grid.

  4. AIRS radiometric calibration validation for climate research

    NASA Technical Reports Server (NTRS)

    Aumann, Hartmut H.; Pagano, Thomas S.; Elliott, Denis; Gaiser, Steve; Gregorich, Dave; Broberg, Steve

    2005-01-01

    Climate research using data from satellite based radiometers makes extreme demands on the traceability and stability of the radiometric calibration. The selection of a cooled grating array spectrometer for the Atmospheric Infrared Sounder, AIRS, is key, but does not ensured that AIRS data will be of climate quality. Additional design features, plus additional pre-launch testing, and extensive on-orbit calibration subsystem monitoring beyond what would suffice for application of the data to weather forecasting were required to ensure the radiometric data quality required for climate research. Validation that climate data quality are being generated makes use of the sea surface skin temperatures (SST and (obs-calc).

  5. Rapid and Sensitive Plate Method for Detection of Aspergillus fumigatus

    PubMed Central

    Bauters, T. G. M.; Nelis, H. J.

    2000-01-01

    The routine identification of Aspergillus fumigatus in clinical samples involves, apart from direct examination, the isolation of the organism on a plate followed by its microscopic characterization. This approach lacks sensitivity, specificity, and speed. A new procedure has been developed combining microcolony formation on a nylon membrane filter at 45°C with the detection of a specific 4-methylumbelliferyl-α-l-arabinopyranoside cleaving enzyme activity in digitonin permeabilized cells. The test takes approximately 14 h and has an efficiency of 98.2% and false-positive and -negative rates of 0 and 3.1%, respectively. When applied to 188 clinical samples taken from patients with proven or nonproven presence of Aspergillus species, a good agreement with the conventional plate-microscopy method was obtained. PMID:11015405

  6. Rapid new methods for paint collection and lead extraction.

    PubMed

    Gutknecht, William F; Harper, Sharon L; Winstead, Wayne; Sorrell, Kristen; Binstock, David A; Salmons, Cynthia A; Haas, Curtis; McCombs, Michelle; Studabaker, William; Wall, Constance V; Moore, Curtis

    2009-01-01

    Chronic exposure of children to lead can result in permanent physiological impairment. In adults, it can cause irritability, poor muscle coordination, and nerve damage to the sense organs and nerves controlling the body. Surfaces coated with lead-containing paints are potential sources of exposure to lead. In April 2008, the U.S. Environmental Protection Agency (EPA) finalized new requirements that would reduce exposure to lead hazards created by renovation, repair, and painting activities, which disturb lead-based paint. On-site, inexpensive identification of lead-based paint is required. Two steps have been taken to meet this challenge. First, this paper presents a new, highly efficient method for paint collection that is based on the use of a modified wood drill bit. Second, this paper presents a novel, one-step approach for quantitatively grinding and extracting lead from paint samples for subsequent lead determination. This latter method is based on the use of a high-revolutions per minute rotor with stator to break up the paint into approximately 50 micron-size particles. Nitric acid (25%, v/v) is used to extract the lead in <3 minutes. Recoveries are consistently >95% for real-world paints, National Institute of Standards and Technology's standard reference materials, and audit samples from the American Industrial Hygiene Association's Environmental Lead Proficiency Analytical Testing Program. This quantitative extraction procedure, when paired with quantitative paint sample collection and lead determination, may enable the development of a lead paint test kit that will meet the specifications of the final EPA rule.

  7. The Rapid-Heat LAMPellet Method: A Potential Diagnostic Method for Human Urogenital Schistosomiasis

    PubMed Central

    Carranza-Rodríguez, Cristina; Pérez-Arellano, José Luis; Vicente, Belén; López-Abán, Julio; Muro, Antonio

    2015-01-01

    Background Urogenital schistosomiasis due to Schistosoma haematobium is a serious underestimated public health problem affecting 112 million people - particularly in sub-Saharan Africa. Microscopic examination of urine samples to detect parasite eggs still remains as definitive diagnosis. This work was focussed on developing a novel loop-mediated isothermal amplification (LAMP) assay for detection of S. haematobium DNA in human urine samples as a high-throughput, simple, accurate and affordable diagnostic tool to use in diagnosis of urogenital schistosomiasis. Methodology/Principal Findings A LAMP assay targeting a species specific sequence of S. haematobium ribosomal intergenic spacer was designed. The effectiveness of our LAMP was assessed in a number of patients´ urine samples with microscopy confirmed S. haematobium infection. For potentially large-scale application in field conditions, different DNA extraction methods, including a commercial kit, a modified NaOH extraction method and a rapid heating method were tested using small volumes of urine fractions (whole urine, supernatants and pellets). The heating of pellets from clinical samples was the most efficient method to obtain good-quality DNA detectable by LAMP. The detection limit of our LAMP was 1 fg/µL of S. haematobium DNA in urine samples. When testing all patients´ urine samples included in our study, diagnostic parameters for sensitivity and specificity were calculated for LAMP assay, 100% sensitivity (95% CI: 81.32%-100%) and 86.67% specificity (95% CI: 75.40%-94.05%), and also for microscopy detection of eggs in urine samples, 69.23% sensitivity (95% CI: 48.21% -85.63%) and 100% specificity (95% CI: 93.08%-100%). Conclusions/Significance We have developed and evaluated, for the first time, a LAMP assay for detection of S. haematobium DNA in heated pellets from patients´ urine samples using no complicated requirement procedure for DNA extraction. The procedure has been named the Rapid

  8. Radiometric calibration and noise estimation of acousto-optic tunable filter hyperspectral imaging systems.

    PubMed

    Katrašnik, Jaka; Pernuš, Franjo; Likar, Boštjan

    2013-05-20

    The accuracy of the radiometric response of acousto-optic tunable filter (AOTF) hyperspectral imaging systems is crucial for obtaining reliable measurements. It is therefore important to know the radiometric response and noise characteristics of the hyperspectral imaging system used. A radiometric model of an AOTF hyperspectral imaging system composed of an imaging sensor radiometric model (CCD, CMOS, and sCMOS) and an AOTF light transmission model is proposed. Using the radiometric model, a method for obtaining the fixed pattern noise (FPN) of the imaging system by displacing and imaging an illuminated reference target is developed. Methods for estimating the temporal noise of the imaging system, using the photon transfer method, and for correcting FPN are also presented. Noise estimation and image restoration methods were tested on an AOTF hyperspectral imaging system. The results indicate that the developed methods can accurately calculate temporal and FPN, and can effectively correct the acquired images. After correction, the signal-to-noise ratio of the acquired images was shown to increase by 26%. PMID:23736239

  9. Radiometric calibration and noise estimation of acousto-optic tunable filter hyperspectral imaging systems.

    PubMed

    Katrašnik, Jaka; Pernuš, Franjo; Likar, Boštjan

    2013-05-20

    The accuracy of the radiometric response of acousto-optic tunable filter (AOTF) hyperspectral imaging systems is crucial for obtaining reliable measurements. It is therefore important to know the radiometric response and noise characteristics of the hyperspectral imaging system used. A radiometric model of an AOTF hyperspectral imaging system composed of an imaging sensor radiometric model (CCD, CMOS, and sCMOS) and an AOTF light transmission model is proposed. Using the radiometric model, a method for obtaining the fixed pattern noise (FPN) of the imaging system by displacing and imaging an illuminated reference target is developed. Methods for estimating the temporal noise of the imaging system, using the photon transfer method, and for correcting FPN are also presented. Noise estimation and image restoration methods were tested on an AOTF hyperspectral imaging system. The results indicate that the developed methods can accurately calculate temporal and FPN, and can effectively correct the acquired images. After correction, the signal-to-noise ratio of the acquired images was shown to increase by 26%.

  10. Rapid and simple method of qPCR primer design.

    PubMed

    Thornton, Brenda; Basu, Chhandak

    2015-01-01

    Quantitative real-time polymerase chain reaction (qPCR) is a powerful tool for analysis and quantification of gene expression. It is advantageous compared to traditional gel-based method of PCR, as gene expression can be visualized "real-time" using a computer. In qPCR, a reporter dye system is used which intercalates with DNA's region of interest and detects DNA amplification. Some of the popular reporter systems used in qPCR are the following: Molecular Beacon(®), SYBR Green(®), and Taqman(®). However, success of qPCR depends on the optimal primers used. Some of the considerations for primer design are the following: GC content, primer self-dimer, or secondary structure formation. Freely available software could be used for ideal qPCR primer design. Here we have shown how to use some freely available web-based software programs (such as Primerquest(®), Unafold(®), and Beacon designer(®)) to design qPCR primers.

  11. The Most Probable Limit of Detection (MPL) for rapid microbiological methods.

    PubMed

    Verdonk, G P H T; Willemse, M J; Hoefs, S G G; Cremers, G; van den Heuvel, E R

    2010-09-01

    Classical microbiological methods have nowadays unacceptably long cycle times. Rapid methods, available on the market for decades, are already applied within the clinical and food industry, but the implementation in pharmaceutical industry is hampered by for instance stringent regulations on validation and comparability with classical methods. Equivalence studies become less relevant when rapid methods are able to detect only one single microorganism. Directly testing this capability is currently impossible due to problems associated with preparing a spiked sample with low microbial counts. To be able to precisely estimate the limit of detection of rapid absence/presence tests, the method of the most probable limit is presented. It is based on three important elements; a relatively precise quantity of microorganisms, a non-serial dilution experiment and a statistical approach. For a set of microorganisms, a limit of detection of one was demonstrated using two different rapid methods.

  12. High throughput microfluidic rapid and low cost prototyping packaging methods.

    PubMed

    Miled, Amine; Sawan, Mohamad

    2013-12-23

    In this work, 3 different packaging and assembly techniques are presented. They can be classified into two categories: one-time use and reusable packaging techniques. The one-time use packaging technique employs UV-based and temperature curing epoxies to connect microtubes to access holes, wire-bonding for integrated circuit connections, and silver epoxy for electrical connections. This method is based on a robust assembly technique that can support relatively high pressure close to 1 psi and does not need any support to strengthen the microfluidic architecture. Reusable packaging techniques consist of PDMS-based microtube interconnectors and anisotropic adhesive films for electrical connections. These devices are more sensitive and fragile. Consequently, Plexiglas support is added to the microfluidic structure to improve the electrical contact when anisotropic adhesive films are used, and also to strengthen the microfluidic architecture. In addition, a micromanipulator is needed to maintain tubes while using a thin PDMS layer to connect them to the access holes. Different PDMS layer thicknesses, ranging from 0.45-3 mm, are tested to compare the best adherence versus injection rates. Applied injection rates are varied from 50-300 μl/hr for 0.45-3 mm PDMS layers, respectively. These techniques are mainly applicable for low-pressure applications. However, they can be extended for high-pressure ones through plasma-oxygen process to permanently seal the PDMS to glass substrates. The main advantage of this technique, besides the fact that it is reusable, consists of keeping the device observable when the microchannel length is very short (in the range of 3 mm or lower).

  13. GPU-based high-precision real-time radiometric rendering for IR scene generation

    NASA Astrophysics Data System (ADS)

    Huang, Xi; Zhang, Jianqi; Zhang, Shaoze; Wu, Xin

    2014-07-01

    Aiming at the problem that traditional infrared scene real-time radiometric rendering method leads to greater calculation error for securing real-time purpose, this article studies the IR rendering comprehensive optimization method, which secures real-time performance as well as calculation accuracy. Firstly, based on the effective average value principle, the spectrum coupling thermal emission and reflected radiations in the spectral radiometric equation are decomposed into physical quantities, and the spectral radiometric equation is improved to become a simpler calculation between "primer" radiance terms and effective average factors. Secondly, the parameter processing method is proposed to cope with the situation when index parameters of effective average factors exceed the maximum dimensionalities of graphics processing unit (GPU) look-up-table (LUT); and pre-calculation method is applied to promote the real-time evaluation efficiency of the physical quantities in the radiometric equation. Finally, concurrent computation of radiometric equation is achieved with GPU IR scene generation software and the precise and real-time rendering of three-dimensional IR scene is realized.

  14. Absolute Radiometric Calibration Of The Thematic Mapper

    NASA Astrophysics Data System (ADS)

    Slater, P. N.; Biggar, S. F.; Holm, R. G.; Jackson, R. D.; Mao, Y.; Moran, M. S.; Palmer, J. M.; Yuan, B.

    1986-11-01

    The results are presented of five in-flight absolute radiometric calibrations, made in the period July 1984 to November 1985, at White Sands, New Mexico, of the solar reflective bands of the Landsat-5 Thematic Mapper (TM) . The 23 bandcalibrations made on the five dates show a ± 2.8% RMS variation from the mean as a percentage of the mean.

  15. Radiometric surface temperature components for row crops

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Land surface temperature is a boundary condition often used in assessing soil moisture status and energy exchange from the soil-vegetation-atmosphere interface. For row crops having incomplete canopy cover, the radiometric surface temperature is a composite of sunlit and shaded vegetation and substr...

  16. Radiometric terrain correction of SPOT5 image

    NASA Astrophysics Data System (ADS)

    Feng, Xiuli; Zhang, Feng; Wang, Ke

    2007-06-01

    Remote sensing SPOT5 images have been widely applied to the surveying of agriculture and forest resources and to the monitoring of ecology environment of mountain areas. However, the accuracy of land-cover classification of mountain areas is often influenced by the topographical shadow effect. Radiometric terrain correction is important for this kind of application. In this study, a radiometric terrain correction model which based on the rationale of moment matching was made in ERDAS IMAGINE by using the Spatial Modeler Language. Lanxi city in China as the study area, a SPOT5 multispectral image with the spatial resolution of 10 m of that mountain area was corrected by the model. Furthermore, in order to present the advantage of this new model in radiometric terrain correction of remote sensing SPOT5 image, the traditional C correction approach was also applied to the same area to see its difference with the result of the radiometric terrain correction model. The results show that the C correction approach keeps the overall statistical characteristics of spectral bands. The mean and the standard deviation value of the corrected image are the same as original ones. However, the standard deviation value became smaller by using the radiometric terrain correction model and the mean value changed accordingly. The reason of these changes is that before the correction, the histogram of the original image is represented as the 'plus-skewness distribution' due to the relief-caused shade effect, after the correction of the model, the histogram of the image is represented as the normal distribution and the shade effect of the relief has been removed. But as for the result of the traditional C approach, the skewness of the histogram remains the same after the correction. Besides, some portions of the mountain area have been over-corrected. So in my study area, the C correction approach can't remove the shade effect of the relief ideally. The results show that the radiometric

  17. Branching Ratios for The Radiometric Calibration of EUNIS-2012

    NASA Technical Reports Server (NTRS)

    Daw, Adrian N.; Bhatia, A. K.; Rabin, Douglas M.

    2012-01-01

    The Extreme Ultraviolet Normal Incidence Spectrograph (EUNIS) sounding rocket instrument is a two-channel imaging spectrograph that observes the solar corona and transition region with high spectral resolution and a rapid cadence made possible by unprecedented sensitivity. The upcoming flight will incorporate a new wavelength channel covering the range 524-630 Angstroms, the previously-flown 300-370 Angstroms channel, and the first flight demonstration of cooled active pixel sensor (APS) arrays. The new 524-630 Angstrom channel incorporates a Toroidal Varied Line Space (TVLS) grating coated with B4C/Ir, providing broad spectral coverage and a wide temperature range of 0.025 to 10 MK. Absolute radiometric calibration of the two channels is being performed using a hollow cathode discharge lamp and NIST-calibrated AXUV-100G photodiode. Laboratory observations of He I 584 Angstroms and He II 304 Angstroms provide absolute radiometric calibrations of the two channels at those two respective wavelengths by using the AXUV photodiode as a transfer standard. The spectral responsivity is being determined by observing line pairs with a common upper state in the spectra of Ne I-III and Ar II-III. Calculations of A-values for the observed branching ratios are in progress.

  18. Radiometric infrared focal plane array imaging system for thermographic applications

    NASA Technical Reports Server (NTRS)

    Esposito, B. J.; Mccafferty, N.; Brown, R.; Tower, J. R.; Kosonocky, W. F.

    1992-01-01

    This document describes research performed under the Radiometric Infrared Focal Plane Array Imaging System for Thermographic Applications contract. This research investigated the feasibility of using platinum silicide (PtSi) Schottky-barrier infrared focal plane arrays (IR FPAs) for NASA Langley's specific radiometric thermal imaging requirements. The initial goal of this design was to develop a high spatial resolution radiometer with an NETD of 1 percent of the temperature reading over the range of 0 to 250 C. The proposed camera design developed during this study and described in this report provides: (1) high spatial resolution (full-TV resolution); (2) high thermal dynamic range (0 to 250 C); (3) the ability to image rapid, large thermal transients utilizing electronic exposure control (commandable dynamic range of 2,500,000:1 with exposure control latency of 33 ms); (4) high uniformity (0.5 percent nonuniformity after correction); and (5) high thermal resolution (0.1 C at 25 C background and 0.5 C at 250 C background).

  19. Rapid methods for the detection of foodborne bacterial pathogens: principles, applications, advantages and limitations

    PubMed Central

    Law, Jodi Woan-Fei; Ab Mutalib, Nurul-Syakima; Chan, Kok-Gan; Lee, Learn-Han

    2015-01-01

    The incidence of foodborne diseases has increased over the years and resulted in major public health problem globally. Foodborne pathogens can be found in various foods and it is important to detect foodborne pathogens to provide safe food supply and to prevent foodborne diseases. The conventional methods used to detect foodborne pathogen are time consuming and laborious. Hence, a variety of methods have been developed for rapid detection of foodborne pathogens as it is required in many food analyses. Rapid detection methods can be categorized into nucleic acid-based, biosensor-based and immunological-based methods. This review emphasizes on the principles and application of recent rapid methods for the detection of foodborne bacterial pathogens. Detection methods included are simple polymerase chain reaction (PCR), multiplex PCR, real-time PCR, nucleic acid sequence-based amplification (NASBA), loop-mediated isothermal amplification (LAMP) and oligonucleotide DNA microarray which classified as nucleic acid-based methods; optical, electrochemical and mass-based biosensors which classified as biosensor-based methods; enzyme-linked immunosorbent assay (ELISA) and lateral flow immunoassay which classified as immunological-based methods. In general, rapid detection methods are generally time-efficient, sensitive, specific and labor-saving. The developments of rapid detection methods are vital in prevention and treatment of foodborne diseases. PMID:25628612

  20. The Eurosdr Project "RADIOMETRIC Aspects of Digital Photogrammetric IMAGES" - Results of the Empirical Phase

    NASA Astrophysics Data System (ADS)

    Honkavaara, E.; Arbiol, R.; Markelin, L.; Martínez, L.; Bovet, S.; Bredif, M.; Chandelier, L.; Heikkinen, V.; Korpela, I.; Lelegard, L.; Pérez, F.; Schläpfer, D.; Tokola, T.

    2011-09-01

    This article presents the empirical research carried out in the context of the multi-site EuroSDR project "Radiometric aspects of digital photogrammetric images" and provides highlights of the results. The investigations have considered the vicarious radiometric and spatial resolution validation and calibration of the sensor system, radiometric processing of the image blocks either by performing relative radiometric block equalization or into absolutely reflectance calibrated products, and finally aspects of practical applications on NDVI layer generation and tree species classification. The data sets were provided by Leica Geosystems ADS40 and Intergraph DMC and the participants represented stakeholders in National Mapping Authorities, software development and research. The investigations proved the stability and quality of evaluated imaging systems with respect to radiometry and optical system. The first new-generation methods for reflectance calibration and equalization of photogrammetric image block data provided promising accuracy and were also functional from the productivity and usability points of view. The reflectance calibration methods provided up to 5% accuracy without any ground reference. Application oriented results indicated that automatic interpretation methods will benefit from the optimal use of radiometrically accurate multi-view photogrammetric imagery.

  1. A rapid molecular method for characterising bacterial bioburden in chronic wounds.

    PubMed

    Wolcott, R D; Dowd, S E

    2008-12-01

    Polymerase chain reaction is a culture-free method of identifying pathogens. This case study describes how, unlike traditional culture reports, a modification of this technique rapidly determined that Pseudomonas spp. was present in a chronic wound.

  2. Radiometric correction and equalization of satellite digital data

    NASA Technical Reports Server (NTRS)

    Algazi, V. R.; Ford, G. E.; Kazakoff, J. A.

    1979-01-01

    Satellite digital data from Landsat and NOAA satellites is often marred by striping or streaking errors due to variations in the response of the radiometric sensors. In this paper, we discuss the equalization of the digital data as a preprocessing step, prior to image enhancement or automatic classification. The methods described make use of statistics of the data itself to generate nonlinear or linear memory-less equalization algorithms. These algorithms, by contrast to multidimensional filtering, do not result in a loss of spatial resolution. Examples of applications to Landsat and NOAA-3 thermal infrared data are given and illustrated.

  3. Radiometric calibration of Landsat Thematic Mapper multispectral images

    USGS Publications Warehouse

    Chavez, P.S.

    1989-01-01

    A main problem encountered in radiometric calibration of satellite image data is correcting for atmospheric effects. Without this correction, an image digital number (DN) cannot be converted to a surface reflectance value. In this paper the accuracy of a calibration procedure, which includes a correction for atmospheric scattering, is tested. Two simple methods, a stand-alone and an in situ sky radiance measurement technique, were used to derive the HAZE DN values for each of the six reflectance Thematic Mapper (TM) bands. The DNs of two Landsat TM images of Phoenix, Arizona were converted to surface reflectances. -from Author

  4. Rapid identification of salmonella serotypes with stereo and hyperspectral microscope imaging Methods

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The hyperspectral microscope imaging (HMI) method can reduce detection time within 8 hours including incubation process. The early and rapid detection with this method in conjunction with the high throughput capabilities makes HMI method a prime candidate for implementation for the food industry. Th...

  5. Rapid Identification of Salmonella Serotypes with Stereo and Hyperspectral Microscope Imaging Methods

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The hyperspectral microscope imaging (HMI) method can reduce detection time within 8 hours including incubation process. The early and rapid detection with this method in conjunction with the high throughput capabilities makes HMI method a prime candidate for implementation for the food industry. Th...

  6. Field Evaluation of a Semiautomated Method for Rapid and Simple Analysis of Recreational Water Microbiological Quality

    PubMed Central

    Anglès d'Auriac, Marc B.; Roberts, Hildegarde; Shaw, Terri; Sirevåg, Reidun; Hermansen, Leonila Fajardo; Berg, James D.

    2000-01-01

    An early warning system using a rapid enzymatic semiautomated method suitable for fecal coliform detection in recreational waters within 8 h was developed further and evaluated in this study. This rapid method was compared to the standard method followed in the United Kingdom. We used 1,011 samples originating from 206 different locations in Wales. When we assessed the presence or absence of fecal coliforms, targeting very low levels of contamination, we obtained 83.9% agreement between the rapid method and the lauryl sulfate broth-membrane filtration technique, whereas direct confirmation of the samples processed by the rapid method showed 89.3% agreement. Environmental enzymatic background activity was found to be the main limiting factor for this method. Owing to a specific and integrated handling of the results by the software of the instrument, the percentage of false-positive results (a consequence of enzymatic background) was successfully limited to 2.9% by the direct confirmation evaluation. However, 7.8% false-negative results due to “late-growers” had to be accepted in order to produce results within a working day. At present, the method can be used in a more conservative way to assess the environmental threshold of 100 CFU of fecal coliforms per 100 ml in recreational waters. The implications of our findings with regard to the applicability of rapid enzymatic methods are discussed. PMID:11010890

  7. A radiometric Bode's Law: Predictions for Uranus

    NASA Technical Reports Server (NTRS)

    Desch, M. D.; Kaiser, M. L.

    1984-01-01

    The magnetospheres of three planets, Earth, Jupiter, and Saturn, are known to be sources of intense, nonthermal radio bursts. The emissions from these sources undergo pronounced long term intensity fluctuations that are caused by the solar wind interaction with the magnetosphere of each planet. Determinations by spacecraft of the low frequency radio spectra and radiation beam geometry now permit a reliable assessment of the overall efficiency of the solar wind in stimulating these emissions. Earlier estimates of how magnetospheric radio output scales with the solar wind energy input must be revised greatly, with the result that, while the efficiency is much lower than previously thought, it is remarkably uniform from planet to planet. The formulation of a radiometric Bode's Law from which a planet's magnetic moment is estimated from its radio emission output is presented. Applying the radiometric scaling law to Uranus, the low-frequency radio power is likely to be measured by the Voyager 2 spacecraft as it approaches this planet.

  8. The Candela and Photometric and Radiometric Measurements

    PubMed Central

    Parr, Albert C.

    2001-01-01

    The national measurement system for photometric and radiometric quantities is presently based upon techniques that make these quantities traceable to a high-accuracy cryogenic radiometer. The redefinition of the candela in 1979 provided the opportunity for national measurement laboratories to base their photometric measurements on optical detector technology rather than on the emission from high-temperature blackbody optical sources. The ensuing technical developments of the past 20 years, including the significant improvements in cryogenic radiometer performance, have provided the opportunity to place the fundamental maintenance of photometric quantities upon absolute detector based technology as was allowed by the 1979 redefinition. Additionally, the development of improved photodetectors has had a significant impact on the methodology in most of the radiometric measurement areas. This paper will review the status of the NIST implementation of the technical changes mandated by the 1979 redefinition of the candela and its effect upon the maintenance and dissemination of optical radiation measurements. PMID:27500020

  9. Intelligent Visual Input: A Graphical Method for Rapid Entry of Patient-Specific Data

    PubMed Central

    Bergeron, Bryan P.; Greenes, Robert A.

    1987-01-01

    Intelligent Visual Input (IVI) provides a rapid, graphical method of data entry for both expert system interaction and medical record keeping purposes. Key components of IVI include: a high-resolution graphic display; an interface supportive of rapid selection, i.e., one utilizing a mouse or light pen; algorithm simplification modules; and intelligent graphic algorithm expansion modules. A prototype IVI system, designed to facilitate entry of physical exam findings, is used to illustrates the potential advantages of this approach.

  10. Assessment criteria and approaches for rapid detection methods to be used in the food industry.

    PubMed

    Wiedmann, Martin; Wang, Siyun; Post, Laurie; Nightingale, Kendra

    2014-04-01

    The number of commercially available kits and methods for rapid detection of foodborne pathogens continues to increase at a considerable pace, and the diversity of methods and assay formats is reaching a point where it is very difficult even for experts to weigh the advantages and disadvantages of different methods and to decide which methods to choose for a certain testing need. Although a number of documents outline quantitative criteria that can be used to evaluate different detection methods (e.g., exclusivity and inclusivity), a diversity of criteria is typically used by industry to select specific methods that are used for pathogen detection. This article is intended to provide an overall outline of criteria that the food industry can use to evaluate new rapid detection methods, with a specific focus on nucleic acid-based detection methods.

  11. A Review of LIDAR Radiometric Processing: From Ad Hoc Intensity Correction to Rigorous Radiometric Calibration.

    PubMed

    Kashani, Alireza G; Olsen, Michael J; Parrish, Christopher E; Wilson, Nicholas

    2015-11-06

    In addition to precise 3D coordinates, most light detection and ranging (LIDAR) systems also record "intensity", loosely defined as the strength of the backscattered echo for each measured point. To date, LIDAR intensity data have proven beneficial in a wide range of applications because they are related to surface parameters, such as reflectance. While numerous procedures have been introduced in the scientific literature, and even commercial software, to enhance the utility of intensity data through a variety of "normalization", "correction", or "calibration" techniques, the current situation is complicated by a lack of standardization, as well as confusing, inconsistent use of terminology. In this paper, we first provide an overview of basic principles of LIDAR intensity measurements and applications utilizing intensity information from terrestrial, airborne topographic, and airborne bathymetric LIDAR. Next, we review effective parameters on intensity measurements, basic theory, and current intensity processing methods. We define terminology adopted from the most commonly-used conventions based on a review of current literature. Finally, we identify topics in need of further research. Ultimately, the presented information helps lay the foundation for future standards and specifications for LIDAR radiometric calibration.

  12. A Review of LIDAR Radiometric Processing: From Ad Hoc Intensity Correction to Rigorous Radiometric Calibration.

    PubMed

    Kashani, Alireza G; Olsen, Michael J; Parrish, Christopher E; Wilson, Nicholas

    2015-01-01

    In addition to precise 3D coordinates, most light detection and ranging (LIDAR) systems also record "intensity", loosely defined as the strength of the backscattered echo for each measured point. To date, LIDAR intensity data have proven beneficial in a wide range of applications because they are related to surface parameters, such as reflectance. While numerous procedures have been introduced in the scientific literature, and even commercial software, to enhance the utility of intensity data through a variety of "normalization", "correction", or "calibration" techniques, the current situation is complicated by a lack of standardization, as well as confusing, inconsistent use of terminology. In this paper, we first provide an overview of basic principles of LIDAR intensity measurements and applications utilizing intensity information from terrestrial, airborne topographic, and airborne bathymetric LIDAR. Next, we review effective parameters on intensity measurements, basic theory, and current intensity processing methods. We define terminology adopted from the most commonly-used conventions based on a review of current literature. Finally, we identify topics in need of further research. Ultimately, the presented information helps lay the foundation for future standards and specifications for LIDAR radiometric calibration. PMID:26561813

  13. A Review of LIDAR Radiometric Processing: From Ad Hoc Intensity Correction to Rigorous Radiometric Calibration

    PubMed Central

    Kashani, Alireza G.; Olsen, Michael J.; Parrish, Christopher E.; Wilson, Nicholas

    2015-01-01

    In addition to precise 3D coordinates, most light detection and ranging (LIDAR) systems also record “intensity”, loosely defined as the strength of the backscattered echo for each measured point. To date, LIDAR intensity data have proven beneficial in a wide range of applications because they are related to surface parameters, such as reflectance. While numerous procedures have been introduced in the scientific literature, and even commercial software, to enhance the utility of intensity data through a variety of “normalization”, “correction”, or “calibration” techniques, the current situation is complicated by a lack of standardization, as well as confusing, inconsistent use of terminology. In this paper, we first provide an overview of basic principles of LIDAR intensity measurements and applications utilizing intensity information from terrestrial, airborne topographic, and airborne bathymetric LIDAR. Next, we review effective parameters on intensity measurements, basic theory, and current intensity processing methods. We define terminology adopted from the most commonly-used conventions based on a review of current literature. Finally, we identify topics in need of further research. Ultimately, the presented information helps lay the foundation for future standards and specifications for LIDAR radiometric calibration. PMID:26561813

  14. Geometric and Radiometric Evaluation of Rasat Images

    NASA Astrophysics Data System (ADS)

    Cam, Ali; Topan, Hüseyin; Oruç, Murat; Özendi, Mustafa; Bayık, Çağlar

    2016-06-01

    RASAT, the second remote sensing satellite of Turkey, was designed and assembled, and also is being operated by TÜBİTAK Uzay (Space) Technologies Research Institute (Ankara). RASAT images in various levels are available free-of-charge via Gezgin portal for Turkish citizens. In this paper, the images in panchromatic (7.5 m GSD) and RGB (15 m GSD) bands in various levels were investigated with respect to its geometric and radiometric characteristics. The first geometric analysis is the estimation of the effective GSD as less than 1 pixel for radiometrically processed level (L1R) of both panchromatic and RGB images. Secondly, 2D georeferencing accuracy is estimated by various non-physical transformation models (similarity, 2D affine, polynomial, affine projection, projective, DLT and GCP based RFM) reaching sub-pixel accuracy using minimum 39 and maximum 52 GCPs. The radiometric characteristics are also investigated for 8 bits, estimating SNR between 21.8-42.2, and noise 0.0-3.5 for panchromatic and MS images for L1R when the sea is masked to obtain the results for land areas. The analysis show that RASAT images satisfies requirements for various applications. The research is carried out in Zonguldak test site which is mountainous and partly covered by dense forest and urban areas.

  15. Revised landsat-5 thematic mapper radiometric calibration

    USGS Publications Warehouse

    Chander, G.; Markham, B.L.; Barsi, J.A.

    2007-01-01

    Effective April 2, 2007, the radiometric calibration of Landsat-5 (L5) Thematic Mapper (TM) data that are processed and distributed by the U.S. Geological Survey (USGS) Center for Earth Resources Observation and Science (EROS) will be updated. The lifetime gain model that was implemented on May 5, 2003, for the reflective bands (1-5, 7) will be replaced by a new lifetime radiometric-calibration curve that is derived from the instrument's response to pseudoinvariant desert sites and from cross calibration with the Landsat-7 (L7) Enhanced TM Plus (ETM+). Although this calibration update applies to all archived and future L5 TM data, the principal improvements in the calibration are for the data acquired during the first eight years of the mission (1984-1991), where the changes in the instrument-gain values are as much as 15%. The radiometric scaling coefficients for bands 1 and 2 for approximately the first eight years of the mission have also been changed. Users will need to apply these new coefficients to convert the calibrated data product digital numbers to radiance. The scaling coefficients for the other bands have not changed. ?? 2007 IEEE.

  16. Method for the rapid synthesis of large quantities of metal oxide nanowires at low temperatures

    DOEpatents

    Sunkara, Mahendra Kumar; Vaddiraju, Sreeram; Mozetic, Miran; Cvelbar, Uros

    2009-09-22

    A process for the rapid synthesis of metal oxide nanoparticles at low temperatures and methods which facilitate the fabrication of long metal oxide nanowires. The method is based on treatment of metals with oxygen plasma. Using oxygen plasma at low temperatures allows for rapid growth unlike other synthesis methods where nanomaterials take a long time to grow. Density of neutral oxygen atoms in plasma is a controlling factor for the yield of nanowires. The oxygen atom density window differs for different materials. By selecting the optimal oxygen atom density for various materials the yield can be maximized for nanowire synthesis of the metal.

  17. A rapid method for determining salinomycin and monensin sensitivity in Eimeria tenella

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Standard methods of determining the ionophore sensitivity of Eimeria rely on infecting chickens with an isolate or a mixture of Eimeria spp. oocysts in the presence of different anti-coccidial drugs. The purpose of this study was to develop a rapid in vitro method for assessing salinomycin and mone...

  18. Methods for separation/purification utilizing rapidly cycled thermal swing sorption

    DOEpatents

    Tonkovich, Anna Lee Y.; Monzyk, Bruce F.; Wang, Yong; VanderWiel, David P.; Perry, Steven T.; Fitzgerald, Sean P.; Simmons, Wayne W.; McDaniel, Jeffrey S.; Weller, Jr., Albert E.

    2004-11-09

    The present invention provides apparatus and methods for separating fluid components. In preferred embodiments, the apparatus and methods utilize microchannel devices with small distances for heat and mass transfer to achieve rapid cycle times and surprisingly large volumes of fluid components separated in short times using relatively compact hardware.

  19. Radiometric calibration and processing procedure for reflective bands on LANDSAT-4 protoflight Thematic Mapper

    NASA Technical Reports Server (NTRS)

    Barker, J. L.; Abrams, R. B.; Ball, D. L.; Leung, K. C.

    1984-01-01

    The radiometric subsystem of NASA's LANDSAT-4 Thematic Mapper (TM) sensor is described. Special emphasis is placed on the internal calibrator (IC) pulse shapes and timing cycle. The procedures for the absolute radiometric calibration of the TM channels with a 122-centimeter integrating sphere and the transfer of radiometric calibration from the channels to the IC are reviewed. The use of the IC to calibrate TM data in the ground processing system consists of pulse integration, pulse averaging, IC state identification, linear regression analysis, and histogram equalization. An overview of the SCROUNGE-era (before August 1983) method is presented. Procedural differences between SCROUNGE and the TIPS-era (after July 1983) and the implications of these differences are discussed.

  20. Absolute radiometric calibration of Als intensity data: effects on accuracy and target classification.

    PubMed

    Kaasalainen, Sanna; Pyysalo, Ulla; Krooks, Anssi; Vain, Ants; Kukko, Antero; Hyyppä, Juha; Kaasalainen, Mikko

    2011-01-01

    Radiometric calibration of airborne laser scanning (ALS) intensity data aims at retrieving a value related to the target scattering properties, which is independent on the instrument or flight parameters. The aim of a calibration procedure is also to be able to compare results from different flights and instruments, but practical applications are sparsely available, and the performance of calibration methods for this purpose needs to be further assessed. We have studied the radiometric calibration with data from three separate flights and two different instruments using external calibration targets. We find that the intensity data from different flights and instruments can be compared to each other only after a radiometric calibration process using separate calibration targets carefully selected for each flight. The calibration is also necessary for target classification purposes, such as separating vegetation from sand using intensity data from different flights. The classification results are meaningful only for calibrated intensity data.

  1. Radiometric Calibration of Mars HiRISE High Resolution Imagery Based on Fpga

    NASA Astrophysics Data System (ADS)

    Hou, Yifan; Geng, Xun; Xing, Shuai; Tang, Yonghe; Xu, Qing

    2016-06-01

    Due to the large data amount of HiRISE imagery, traditional radiometric calibration method is not able to meet the fast processing requirements. To solve this problem, a radiometric calibration system of HiRISE imagery based on field program gate array (FPGA) is designed. The montage gap between two channels caused by gray inconsistency is removed through histogram matching. The calibration system is composed of FPGA and DSP, which makes full use of the parallel processing ability of FPGA and fast computation as well as flexible control characteristic of DSP. Experimental results show that the designed system consumes less hardware resources and the real-time processing ability of radiometric calibration of HiRISE imagery is improved.

  2. Artifact correction and absolute radiometric calibration techniques employed in the Landsat 7 image assessment system

    USGS Publications Warehouse

    Boncyk, Wayne C.; Markham, Brian L.; Barker, John L.; Helder, Dennis

    1996-01-01

    The Landsat-7 Image Assessment System (IAS), part of the Landsat-7 Ground System, will calibrate and evaluate the radiometric and geometric performance of the Enhanced Thematic Mapper Plus (ETM +) instrument. The IAS incorporates new instrument radiometric artifact correction and absolute radiometric calibration techniques which overcome some limitations to calibration accuracy inherent in historical calibration methods. Knowledge of ETM + instrument characteristics gleaned from analysis of archival Thematic Mapper in-flight data and from ETM + prelaunch tests allow the determination and quantification of the sources of instrument artifacts. This a priori knowledge will be utilized in IAS algorithms designed to minimize the effects of the noise sources before calibration, in both ETM + image and calibration data.

  3. Absolute radiometric calibration of Als intensity data: effects on accuracy and target classification.

    PubMed

    Kaasalainen, Sanna; Pyysalo, Ulla; Krooks, Anssi; Vain, Ants; Kukko, Antero; Hyyppä, Juha; Kaasalainen, Mikko

    2011-01-01

    Radiometric calibration of airborne laser scanning (ALS) intensity data aims at retrieving a value related to the target scattering properties, which is independent on the instrument or flight parameters. The aim of a calibration procedure is also to be able to compare results from different flights and instruments, but practical applications are sparsely available, and the performance of calibration methods for this purpose needs to be further assessed. We have studied the radiometric calibration with data from three separate flights and two different instruments using external calibration targets. We find that the intensity data from different flights and instruments can be compared to each other only after a radiometric calibration process using separate calibration targets carefully selected for each flight. The calibration is also necessary for target classification purposes, such as separating vegetation from sand using intensity data from different flights. The classification results are meaningful only for calibrated intensity data. PMID:22346660

  4. Radiometric Characterization of Hyperspectral Imagers using Multispectral Sensors

    NASA Technical Reports Server (NTRS)

    McCorkel, Joel; Kurt, Thome; Leisso, Nathan; Anderson, Nikolaus; Czapla-Myers, Jeff

    2009-01-01

    The Remote Sensing Group (RSG) at the University of Arizona has a long history of using ground-based test sites for the calibration of airborne and satellite based sensors. Often, ground-truth measurements at these test sites are not always successful due to weather and funding availability. Therefore, RSG has also automated ground instrument approaches and cross-calibration methods to verify the radiometric calibration of a sensor. The goal in the cross-calibration method is to transfer the calibration of a well-known sensor to that of a different sensor, This work studies the feasibility of determining the radiometric calibration of a hyperspectral imager using multispectral a imagery. The work relies on the Moderate Resolution Imaging Spectroradiometer (M0DIS) as a reference for the hyperspectral sensor Hyperion. Test sites used for comparisons are Railroad Valley in Nevada and a portion of the Libyan Desert in North Africa. Hyperion bands are compared to MODIS by band averaging Hyperion's high spectral resolution data with the relative spectral response of M0DlS. The results compare cross-calibration scenarios that differ in image acquisition coincidence, test site used for the calibration, and reference sensor. Cross-calibration results are presented that show agreement between the use of coincident and non-coincident image pairs within 2% in most brands as well as similar agreement between results that employ the different MODIS sensors as a reference.

  5. Empirical radiometric correction of optical remote sensing imagery

    NASA Astrophysics Data System (ADS)

    Palubinskas, Gintautas; Mueller, Rupert M.; Reinartz, Peter H.

    2002-08-01

    We propose an empirical radiometric correction method for the effects, such as atmospheric effects and anisotropic reflection of the surface, in optical remote sensing data. These distortions are sensor viewing (scanning) angle dependent, thus they can be significant for data received from airborne sensors due to their wide field of view. The procedure is based solely on the digital image data and consists of several steps. First, the initial image region near nadir (minimal distortions) is clustered by an extended k-means algorithm, which automatically detects the clusters (surface types) in an image. Then, for each cluster an average line profile is calculated. These profiles (initially defined in a middle part of an image line) are extrapolated to the whole line of an image by a polynomial approximation. Finally, from these polynomial functions the linear regression over all clusters is build using the radiative transfer equation, which allows the radiometric correction for each viewing angle in an image relative to the reference angle, usually nadir. The procedure is iterative, that is the correction is first performed for a narrow part around the initial region. Then the procedure is initialized with this newly corrected image region and repeated until the whole image is corrected. The experiments for data acquired by airborne multispectral scanner DAEDALUS AADS 1268 ATM show the effectiveness of the proposed method especially for the mosaicking and classification applications.

  6. Radiometric-microbiologic assay of niacin using Kloeckera brevis: analysis of human blood and food

    SciTech Connect

    Guilarte, T.R.; Pravlik, K.

    1983-12-01

    Kloeckera brevis, a yeast, was used as the test organism for the development of a radiometric-microbiologic (RMA) assay for niacin. The assay was determined to be sensitive to the 2 ng niacin per vial level and specific for the biologically active forms of this vitamin. The method was shown to be simple, accurate, and precise in the analysis of niacin in human blood and food. The application of the radiometric technique eliminates some of the problems encountered with conventional turbidimetric-microbiologic assay.

  7. RAPID FUSION METHOD FOR DETERMINATION OF PLUTONIUM ISOTOPES IN LARGE RICE SAMPLES

    SciTech Connect

    Maxwell, S.

    2013-03-01

    A new rapid fusion method for the determination of plutonium in large rice samples has been developed at the Savannah River National Laboratory (Aiken, SC, USA) that can be used to determine very low levels of plutonium isotopes in rice. The recent accident at Fukushima Nuclear Power Plant in March, 2011 reinforces the need to have rapid, reliable radiochemical analyses for radionuclides in environmental and food samples. Public concern regarding foods, particularly foods such as rice in Japan, highlights the need for analytical techniques that will allow very large sample aliquots of rice to be used for analysis so that very low levels of plutonium isotopes may be detected. The new method to determine plutonium isotopes in large rice samples utilizes a furnace ashing step, a rapid sodium hydroxide fusion method, a lanthanum fluoride matrix removal step, and a column separation process with TEVA Resin cartridges. The method can be applied to rice sample aliquots as large as 5 kg. Plutonium isotopes can be determined using alpha spectrometry or inductively-coupled plasma mass spectrometry (ICP-MS). The method showed high chemical recoveries and effective removal of interferences. The rapid fusion technique is a rugged sample digestion method that ensures that any refractory plutonium particles are effectively digested. The MDA for a 5 kg rice sample using alpha spectrometry is 7E-5 mBq g{sup -1}. The method can easily be adapted for use by ICP-MS to allow detection of plutonium isotopic ratios.

  8. NASA IKONOS Multispectral Radiometric Calibration and 3-Year Temporal Stability Assessment

    NASA Technical Reports Server (NTRS)

    Pagnutti, Mary; Carver, David; Holekamp, Kara; Ryan, Robert; Zanoni, Vicki; Thome, Kurtis; Schiller, Stephen; Aaran, David

    2003-01-01

    Radiometric calibration of commercial imaging satellite products is required to ensure that science and application communities can place confidence in the imagery they use and can fully understand its properties. Inaccurate radiometric calibrations can lead to erroneous decisions and invalid conclusions and can limit intercomparisons with other system. In addition, the user community has little or no insight into the design and operation of commercial sensors or into the methods involved in generating commercial products. To address this calibration need, the NASA Stennis Space Center (SSC) Earth Science Applications (ESA) Directorate established a commercial satellite imaging radiometric calibration team consisting of three independent groups: NASA, SSC,ESA, the University of Arizona Remote Sensing Group, and South Dacota State University. Each group determined the absolute radiometric calibration coefficients of the Space Imaging IKONOS 4-band, 4 m multispectral product covering the visible through near-infrared spectral region. For a three year period beginning in 2000, each team employed some variant of a reflectance-based vicarious calibration approach, requiring ground-based measurements coincident with IKONOS image acquisitions and radiative transfer calculations. Several study sites throughout the United States were employed that covered nearly the entire dynamic range of the IKONOS sensor. IKONOS at-sensor radiance values were compared to those estimated by each independent group to determine the IKONOS sensor's radiometric accuracy and stability. Over 10 individual vicariously determined at-sensor radiance estimates were used each year. When combined, these estimates provided a high-precision radiometric gain calibration coefficient. No significant calibration offset was observed. The results of this evaluation provide the scientific community with an independent assessment of the IKONOS sensor's absolute calibration and temporal stability over the 3

  9. INTRABAND RADIOMETRIC PERFORMANCE OF THE LANDSAT 4 THEMATIC MAPPER.

    USGS Publications Warehouse

    Kieffer, Hugh H.; Eliason, Eric M.; Chavez, Pat S.; ,

    1985-01-01

    This preliminary report examines those radiometric characteristics of the Landsat 4 Thematic Mapper (TM) that can be established without absolute calibration of spectral data. Analysis is based largely on radiometrically raw (B type) data of three daytime and two nighttime scenes; in most scenes, a set of 512 lines were examined on an individual-detector basis. Subscenes selected for uniform-radiance were used to characterize subtle radiometric differences and noise problems.

  10. Relative radiometric calibration of LANDSAT TM reflective bands

    NASA Technical Reports Server (NTRS)

    Barker, J. L.

    1984-01-01

    Raw thematic mapper (TM) calibration data from pre-launch tests and in-orbit acquisitions from LANDSAT 4 and 5 satellites are analyzed to assess the radiometric characteristics of the TM sensor. A software program called TM radiometric and algorithmic performance program (TRAPP) was used for the majority of analyses. Radiometric uncertainty in the final TM image originates from: (1) scene variability (solar irradiance and atmospheric scattering); (2) optical and electrical variability of the sensor; and (3) variability introduced during image processing.

  11. Current status and future plans for NBS radiometric source standards

    NASA Technical Reports Server (NTRS)

    Kostkowski, H. J.

    1975-01-01

    The accuracy and long-term stability of currently available NBS radiometric source standards are described. Current research efforts and expected results in this area are outlined. There are over ten NBS radiometric source standards currently available or under development that are of interest for solar measurements or for remote sensing of the earth. The standards and sources are classified and described in terms of the radiometric quantities they represent -- spectral radiance, spectral irradiance and irradiance.

  12. Rapid assessment method for prevalence and intensity of Loa loa infection.

    PubMed Central

    Takougang, Innocent; Meremikwu, Martin; Wandji, Samuel; Yenshu, Emmanuel V.; Aripko, Ben; Lamlenn, Samson B.; Eka, Braide L.; Enyong, Peter; Meli, Jean; Kale, Oladele; Remme, Jan H.

    2002-01-01

    OBJECTIVE: To assess the validity of observations on eye worm and Calabar swellings for the rapid assessment of the prevalence and intensity of loiasis at the community level. METHOD: A total of 12895 individuals over the age of 15 years living in 102 communities in Cameroon and Nigeria took part in the study. A standardized questionnaire was administered to participants from whom finger-prick blood samples were collected and examined for Loa loa microfilariae. Rapid assessments of the prevalence and intensity of loiasis were made on the basis of a history of eye worm or Calabar swellings. FINDINGS: There was a strong correlation between the indices of the rapid assessment procedures and the parasitological indices of L. loa endemicity. The rapid assessment indices were effective in diagnosing high-risk communities (sensitivity 94-100%; specificity 66-92%). The highest sensitivity (100%) and specificity (92%) were obtained with a rapid assessment procedure based on a history of eye worm lasting 1-7 days together with confirmation by the guided recognition of a photograph of adult L. loa in the eye. CONCLUSION: Rapid assessment of the prevalence and intensity of loiasis at the community level can be achieved using a procedure based on the history of eye worm lasting 1-7 days together with confirmation by the guided recognition of a photograph of an adult L. loa in the eye. PMID:12481206

  13. Method for rapid estimation of scour at highway bridges based on limited site data

    USGS Publications Warehouse

    Holnbeck, S.R.; Parrett, Charles

    1997-01-01

    Limited site data were used to develop a method for rapid estimation of scour at highway bridges. The estimates can be obtained in a matter of hours rather than several days as required by more-detailed methods. Such a method is important because scour assessments are needed to identify scour-critical bridges throughout the United States. Using detailed scour-analysis methods and scour-prediction equations recommended by the Federal Highway Administration, the U.S. Geological Survey, in cooperation with the Montana Department of Transportation, obtained contraction, pier, and abutment scour-depth data for sites from 10 States.The data were used to develop relations between scour depth and hydraulic variables that can be rapidly measured in the field. Relations between scour depth and hydraulic variables, in the form of envelope curves, were based on simpler forms of detailed scour-prediction equations. To apply the rapid-estimation method, a 100-year recurrence interval peak discharge is determined, and bridge- length data are used in the field with graphs relating unit discharge to velocity and velocity to bridge backwater as a basis for estimating flow depths and other hydraulic variables that can then be applied using the envelope curves. The method was tested in the field. Results showed good agreement among individuals involved and with results from more-detailed methods. Although useful for identifying potentially scour-critical bridges, themethod does not replace more-detailed methods used for design purposes. Use of the rapid- estimation method should be limited to individuals having experience in bridge scour, hydraulics, and flood hydrology, and some training in use of the method.

  14. Radiometric instrumentation and measurements guide for photovoltaic performance testing

    SciTech Connect

    Myers, D.

    1997-04-01

    The Photovoltaic Module and Systems Performance and Engineering Project at the National Renewable Energy Laboratory performs indoor and outdoor standardization, testing, and monitoring of the performance of a wide range of photovoltaic (PV) energy conversion devices and systems. The PV Radiometric Measurements and Evaluation Team (PVSRME) within that project is responsible for measurement and characterization of natural and artificial optical radiation which stimulates the PV effect. The PV manufacturing and research and development community often approaches project members for technical information and guidance. A great area of interest is radiometric instrumentation, measurement techniques, and data analysis applied to understanding and improving PV cell, module, and system performance. At the Photovoltaic Radiometric Measurements Workshop conducted by the PVSRME team in July 1995, the need to communicate knowledge of solar and optical radiometric measurements and instrumentation, gained as a result of NREL`s long-term experiences, was identified as an activity that would promote improved measurement processes and measurement quality in the PV research and manufacturing community. The purpose of this document is to address the practical and engineering need to understand optical and solar radiometric instrument performance, selection, calibration, installation, and maintenance applicable to indoor and outdoor radiometric measurements for PV calibration, performance, and testing applications. An introductory section addresses radiometric concepts and definitions. Next, concepts essential to spectral radiometric measurements are discussed. Broadband radiometric instrumentation and measurement concepts are then discussed. Each type of measurement serves as an important component of the PV cell, module, and system performance measurement and characterization process.

  15. A simple, rapid and inexpensive screening method for the identification of Pythium insidiosum.

    PubMed

    Tondolo, Juliana Simoni Moraes; Loreto, Erico Silva; Denardi, Laura Bedin; Mario, Débora Alves Nunes; Alves, Sydney Hartz; Santurio, Janio Morais

    2013-04-01

    Growth of Pythium insidiosum mycelia around minocycline disks (30μg) did not occur within 7days of incubation at 35°C when the isolates were grown on Sabouraud, corn meal, Muller-Hinton or RPMI agar. This technique offers a simple and rapid method for the differentiation of P. insidiosum from true filamentous fungi. PMID:23419825

  16. A rapid and simple method for the detection and enumeration of Escherichia coli in cleansed shellfish.

    PubMed Central

    Humphrey, T. J.; Gawler, A. H.

    1986-01-01

    A multiple-tube technique based on peptone water incubated at 44 degrees C for 24 h followed by detection of indole was found to be sensitive and specific for the detection of Escherichia coli in oysters and mussels. The method has the advantage of providing rapid results and is both less expensive and less time-consuming than other MPN techniques. PMID:3537117

  17. Collision-induced fragmentation accurate mass spectrometric analysis methods to rapidly characterize phytochemicals in plant extracts

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The rapid advances in analytical chromatography equipment have made the reliable and reproducible measurement of a wide range of plant chemical components possible. Full chemical characterization of a given plant material is possible with the new mass spectrometers currently available. New methods a...

  18. RAPID AND PRECISE METHOD FOR MEASURING STABLE CARBON ISOTOPE RATIOS OF DISSOLVED INORGANIC CARBON

    EPA Science Inventory

    We describe a method for rapid preparation, concentration and stable isotopic analysis of dissolved inorganic carbon (d13C-DIC). Liberation of CO2 was accomplished by placing 100 ?l phosphoric acid and 0.9 ml water in an evacuated 1.7-ml gas chromatography (GC) injection vial. Fo...

  19. [A new, automatic, non-radiometric system for culturing MB/BACT bacilli and its value in the microbiologic diagnosis of tuberculosis].

    PubMed

    Zofia, Z; Augustynowicz-Kopeć, E; Klatt, M

    1998-01-01

    The MB/BacT is a fully automated, rapid, non-radiometric system, for the culture of Mycobacteria for clinical samples other than blood. CO2 production is measured and reported as reflective units from the MB/BacT Process Bottle colorimetric sensor. We are evaluating the MB/BacT system in comparison to our routine culture method--culture on egg media (glycerol and puruvate), in the Bactec 460-Tb radiometric machine and in MB Redox. A total of 286 clinical samples from respiratory tract were inoculated into three or four culture systems and incubated at 37 degrees C. There was only little difference in mean time to detection between the MB/BacT and Bactec system (for M.tuberculosis 11 days versus 9 days), but both systems were faster than egg media (16 days). Contamination rates for MB/BacT system was 8.4%, and for Bactec 6.9%. The colorimetric technology used in the MB/BacT is a rapid and sensitive for the measurement of mycobacterial growth. PMID:9658878

  20. An extended area blackbody for radiometric calibration

    NASA Astrophysics Data System (ADS)

    LaVeigne, Joe; Franks, Greg; Singer, Jake; Arenas, D. J.; McHugh, Steve

    2013-06-01

    SBIR is developing an enhanced blackbody for improved radiometric testing. The main feature of the blackbody is an improved coating with higher emissivity than the standard coating used. Comparative measurements of the standard and improved coatings are reported, including reflectance. The coatings were also tested with infrared imagers and a broadband emissivity estimate derived from the imagery data. In addition, a control algorithm for constant slew rate has been implemented, primarily for use in minimum resolvable temperature measurements. The system was tested over a range of slew rates from 0.05 K/min to 10 K/min and its performance reported.

  1. Rapid and mild purification method for nanoparticles from a dispersed solution using a monolithic silica disk.

    PubMed

    Itoh, Naoki; Santa, Tomofumi; Kato, Masaru

    2015-07-24

    A rapid and mild purification method for nanoparticles using the commercially available monolithic silica disk, MonoSpin(®), was developed. The nanoparticles were purified from a dispersed solution by filtration with the aid of centrifugation at 2290×g for 2min. The purification conditions were rapid, mild, and simple compared with those of the conventional purification methods such as ultracentrifugation, dialysis, size exclusion chromatography, and ultrafiltration. The method was shown to be applicable for the purification of various nanoparticles, regardless of their size (from 21 to 100nm), composition material (silica, polyethylene glycol, and pegylated liposome), and encapsulated molecule (rhodamine 110 and doxorubicin). It was shown that this method is applicable to the purification of a wide range of nanoparticles in many different fields.

  2. Rapid and simple method for serotyping of staphylocoagulase using polystyrene latex particles.

    PubMed

    Kouguchi, Yoshihiro; Fujiwara, Takako; Teramoto, Miki

    2009-01-01

    The serotyping of staphylocoagulase is widely used in Japan. However, the conventional immunoassay based on neutralization of the antisera is so laborious and time-consuming that it is not widely used in the other countries. In order to overcome these drawbacks we developed a novel staphylocoagulase serotyping method based on a microplate format using polystyrene latex particles. Addition of latex particles promotes the formation of fibrin complexes, which represents a more rapidly and easily detected endpoint. For 83 strains, 90% were classified into serotypes within 3 h, and there was no discrepancy in the results between our method and the conventional method. These results indicate that the present microplate method is rapid, simple, and interpretable. PMID:20528093

  3. An economical and combined method for rapid and efficient isolation of fungal DNA.

    PubMed

    Lech, T; Syguła-Cholewinska, J; Szostak-Kot, J

    2014-12-18

    DNA isolation is a crucial step of conducting genetic studies in any organism. However, this process is quite difficult when studying fungi because of the need to damage the fungal cell walls of specific structures. In this study, we developed a method for the rapid and efficient isolation of fungal DNA based on simultaneous mechanical and enzymatic cell wall degradation. There are several typical modifications of the standard phenol-chloroform DNA extraction method. This method can be modified to degrade the fungal cell wall. The first step of the presented DNA extraction included manual homogenization in modified lysis buffer. Next, enzymatic digestion using 2 enzymes was conducted, including lyticase and proteinase K. To carefully select the most favorable conditions, we developed an economical, rapid, and reliable method for fungal DNA extraction that ensures both high efficiency and proper purity, which are essential for further analyses.

  4. Apparatus and method for rapid separation and detection of hydrocarbon fractions in a fluid stream

    SciTech Connect

    Sluder, Charles S.; Storey, John M.; Lewis, Sr., Samuel A.

    2013-01-22

    An apparatus and method for rapid fractionation of hydrocarbon phases in a sample fluid stream are disclosed. Examples of the disclosed apparatus and method include an assembly of elements in fluid communication with one another including one or more valves and at least one sorbent chamber for removing certain classifications of hydrocarbons and detecting the remaining fractions using a detector. The respective ratios of hydrocarbons are determined by comparison with a non separated fluid stream.

  5. Adjustment of a rapid method for quantification of Fusarium spp. spore suspensions in plant pathology.

    PubMed

    Caligiore-Gei, Pablo F; Valdez, Jorge G

    2015-01-01

    The use of a Neubauer chamber is a broadly employed method when cell suspensions need to be quantified. However, this technique may take a long time and needs trained personnel. Spectrophotometry has proved to be a rapid, simple and accurate method to estimate the concentration of spore suspensions of isolates of the genus Fusarium. In this work we present a linear formula to relate absorbance measurements at 530nm with the number of microconidia/ml in a suspension.

  6. Application of a rapid screening method to detect irradiated meat in Brazil

    NASA Astrophysics Data System (ADS)

    Villavicencio, A. L. C. H. A. L. C. H.; Mancini-Filho, J. J.; Delincée, H.

    2000-03-01

    Based on the enormous potential for food irradiation in Brazil, and to ensure free consumer choice, there is a need to find a convenient and rapid method for detection of irradiated food. Since treatment with ionising radiation causes DNA fragmentation, the analysis of DNA damage might be promising. In this paper, the DNA Comet Assay was used to identify exotic meat (boar, jacaré and capybara), irradiated with 60Co gamma rays. The applied radiation doses were 0, 1.5, 3.0 and 4.5 kGy. Analysis of the DNA migration enabled a rapid identification of the radiation treatment.

  7. New Sentinel-2 radiometric validation approaches (SEOM program)

    NASA Astrophysics Data System (ADS)

    Bruniquel, Véronique; Lamquin, Nicolas; Ferron, Stéphane; Govaerts, Yves; Woolliams, Emma; Dilo, Arta; Gascon, Ferran

    2016-04-01

    SEOM is an ESA program element whose one of the objectives aims at launching state-of-the-art studies for the scientific exploitation of operational missions. In the frame of this program, ESA awarded ACRI-ST and its partners Rayference and National Physical Laboratory (NPL) early 2016 for a R&D study on the development and intercomparison of algorithms for validating the Sentinel-2 radiometric L1 data products beyond the baseline algorithms used operationally in the frame of the S2 Mission Performance Centre. In this context, several algorithms have been proposed and are currently in development: The first one is based on the exploitation of Deep Convective Cloud (DCC) observations over ocean. This method allows an inter-band radiometry validation from the blue to the NIR (typically from B1 to B8a) from a reference band already validated for example with the well-known Rayleigh method. Due to their physical properties, DCCs appear from the remote sensing point of view to have bright and cold tops and they can be used as invariant targets to monitor the radiometric response degradation of reflective solar bands. The DCC approach is statistical i.e. the method shall be applied on a large number of measurements to derive reliable statistics and decrease the impact of the perturbing contributors. The second radiometric validation method is based on the exploitation of matchups combining both concomitant in-situ measurements and Sentinel-2 observations. The in-situ measurements which are used here correspond to measurements acquired in the frame of the RadCalNet networks. The validation is performed for the Sentinel-2 bands similar to the bands of the instruments equipping the validation site. The measurements from the Cimel CE 318 12-filters BRDF Sun Photometer installed recently in the Gobabeb site near the Namib desert are used for this method. A comprehensive verification of the calibration requires an analysis of MSI radiances over the full dynamic range

  8. Validation of rapid assessment methods to determine streamflow duration classes in the Pacific Northwest, USA.

    PubMed

    Nadeau, Tracie-Lynn; Leibowitz, Scott G; Wigington, Parker J; Ebersole, Joseph L; Fritz, Ken M; Coulombe, Robert A; Comeleo, Randy L; Blocksom, Karen A

    2015-07-01

    United States Supreme Court rulings have created uncertainty regarding U.S. Clean Water Act (CWA) authority over certain waters, and established new data and analytical requirements for determining CWA jurisdiction. Thus, rapid assessment methods are needed that can differentiate between ephemeral, intermittent, and perennial streams. We report on the validation of several methods. The first (Interim Method) was developed through best professional judgment (BPJ); an alternative (Revised Method) resulted from statistical analysis. We tested the Interim Method on 178 study reaches in Oregon, and constructed the Revised Method based on statistical analysis of the Oregon data. Next, we evaluated the regional applicability of the methods on 86 study reaches across a variety of hydrologic landscapes in Washington and Idaho. During the second phase, we also compared the Revised Method with a similar approach (Combined Method) based on combined field data from Oregon, Washington, and Idaho. We further compared field-based methods with a GIS-based approach (GIS Method) that used the National Hydrography Dataset and a synthetic stream network. Evaluations of all methods compared results with actual streamflow duration classes. The Revised Method correctly determined known streamflow duration 83.9% of the time, versus 62.3% accuracy of the Interim Method and 43.6% accuracy for the GIS-based approach. The Combined Method did not significantly outperform the Revised Method. Analysis showed biological indicators most accurately discriminate streamflow duration classes. While BPJ established a testable hypothesis, this study illustrates the importance of quantitative field testing of rapid assessment methods. Results support a consistent method applicable across the Pacific Northwest. PMID:25931296

  9. Validation of Rapid Assessment Methods to Determine Streamflow Duration Classes in the Pacific Northwest, USA

    NASA Astrophysics Data System (ADS)

    Nadeau, Tracie-Lynn; Leibowitz, Scott G.; Wigington, Parker J.; Ebersole, Joseph L.; Fritz, Ken M.; Coulombe, Robert A.; Comeleo, Randy L.; Blocksom, Karen A.

    2015-07-01

    United States Supreme Court rulings have created uncertainty regarding U.S. Clean Water Act (CWA) authority over certain waters, and established new data and analytical requirements for determining CWA jurisdiction. Thus, rapid assessment methods are needed that can differentiate between ephemeral, intermittent, and perennial streams. We report on the validation of several methods. The first (Interim Method) was developed through best professional judgment (BPJ); an alternative (Revised Method) resulted from statistical analysis. We tested the Interim Method on 178 study reaches in Oregon, and constructed the Revised Method based on statistical analysis of the Oregon data. Next, we evaluated the regional applicability of the methods on 86 study reaches across a variety of hydrologic landscapes in Washington and Idaho. During the second phase, we also compared the Revised Method with a similar approach (Combined Method) based on combined field data from Oregon, Washington, and Idaho. We further compared field-based methods with a GIS-based approach (GIS Method) that used the National Hydrography Dataset and a synthetic stream network. Evaluations of all methods compared results with actual streamflow duration classes. The Revised Method correctly determined known streamflow duration 83.9 % of the time, versus 62.3 % accuracy of the Interim Method and 43.6 % accuracy for the GIS-based approach. The Combined Method did not significantly outperform the Revised Method. Analysis showed biological indicators most accurately discriminate streamflow duration classes. While BPJ established a testable hypothesis, this study illustrates the importance of quantitative field testing of rapid assessment methods. Results support a consistent method applicable across the Pacific Northwest.

  10. RNASwift: A rapid, versatile RNA extraction method free from phenol and chloroform.

    PubMed

    Nwokeoji, Alison O; Kilby, Peter M; Portwood, David E; Dickman, Mark J

    2016-11-01

    RNASwift is an inexpensive, versatile method for the rapid extraction of RNA. Existing RNA extraction methods typically use hazardous chemicals including phenol, chloroform and formamide which are often difficult to completely remove from the extracted RNA. RNASwift uses sodium chloride and sodium dodecyl sulphate to lyse the cells and isolate the RNA from the abundant cellular components in conjunction with solid phase extraction or isopropanol precipitation to rapidly purify the RNA. Moreover, the purified RNA is directly compatible with downstream analysis. Using spectrophotometry in conjunction with ion pair reverse phase chromatography to analyse the extracted RNA, we show that RNASwift extracts and purifies RNA of higher quality and purity in comparison to alternative RNA extraction methods. The RNASwift method yields approximately 25 μg of RNA from only 10(8)Escherichia coli cells. Furthermore, RNASwift is versatile; the same simple reagents can be used to rapidly extract RNA from a variety of different cells including bacterial, yeast and mammalian cells. In addition to the extraction of total RNA, the RNASwift method can also be used to extract double stranded RNA from genetically modified E. coli in higher yields compared to alternative methods. PMID:27495141

  11. RNASwift: A rapid, versatile RNA extraction method free from phenol and chloroform.

    PubMed

    Nwokeoji, Alison O; Kilby, Peter M; Portwood, David E; Dickman, Mark J

    2016-11-01

    RNASwift is an inexpensive, versatile method for the rapid extraction of RNA. Existing RNA extraction methods typically use hazardous chemicals including phenol, chloroform and formamide which are often difficult to completely remove from the extracted RNA. RNASwift uses sodium chloride and sodium dodecyl sulphate to lyse the cells and isolate the RNA from the abundant cellular components in conjunction with solid phase extraction or isopropanol precipitation to rapidly purify the RNA. Moreover, the purified RNA is directly compatible with downstream analysis. Using spectrophotometry in conjunction with ion pair reverse phase chromatography to analyse the extracted RNA, we show that RNASwift extracts and purifies RNA of higher quality and purity in comparison to alternative RNA extraction methods. The RNASwift method yields approximately 25 μg of RNA from only 10(8)Escherichia coli cells. Furthermore, RNASwift is versatile; the same simple reagents can be used to rapidly extract RNA from a variety of different cells including bacterial, yeast and mammalian cells. In addition to the extraction of total RNA, the RNASwift method can also be used to extract double stranded RNA from genetically modified E. coli in higher yields compared to alternative methods.

  12. A rapid photoelectric method for reading cell migration from agarose microdroplets.

    PubMed

    Gauthier-Rahman, S; Morlat, J L; Leca, G; Bouin, M

    1982-08-27

    A rapid photoelectric method for reading cell migration from agarose microdroplets is described. Practically instantaneous, the method eliminates drawing and planimetry and makes feasible the use of a wide range of antigen concentrations. The results obtained are similar to those obtained by planimetry, but the photoelectric method is more sensitive. Enhancement of migration as well as inhibition were significantly demonstrated by this method. Migration inhibition of immune mouse spleen cells was found to be bizonal, with 2 peaks, one at very low antigen concentrations (10(-3) microgram/ml ovalbumin) and one at 10 microgram/ml.

  13. Cellufine sulfate column chromatography as a simple, rapid, and effective method to purify dengue virus.

    PubMed

    Kanlaya, Rattiyaporn; Thongboonkerd, Visith

    2016-08-01

    Conventional method to purify/concentrate dengue virus (DENV) is time-consuming with low virus recovery yield. Herein, we applied cellufine sulfate column chromatography to purify/concentrate DENV based on the mimicry between heparan sulfate and DENV envelope protein. Comparative analysis demonstrated that this new method offered higher purity (as determined by less contamination of bovine serum albumin) and recovery yield (as determined by greater infectivity). Moreover, overall duration used for cellufine sulfate column chromatography to purify/concentrate DENV was approximately 1/20 of that of conventional method. Therefore, cellufine sulfate column chromatography serves as a simple, rapid, and effective alternative method for DENV purification/concentration.

  14. A robust method for the rapid generation of recombinant Zika virus expressing the GFP reporter gene.

    PubMed

    Gadea, Gilles; Bos, Sandra; Krejbich-Trotot, Pascale; Clain, Elodie; Viranaicken, Wildriss; El-Kalamouni, Chaker; Mavingui, Patrick; Desprès, Philippe

    2016-10-01

    Zika virus (ZIKV) infection is a major public health problem with severe human congenital and neurological anomalies. The screening of anti-ZIKV compounds and neutralizing antibodies needs reliable and rapid virus-based assays. Here, we described a convenient method leading to the rapid production of molecular clones of ZIKV. To generate a molecular clone of ZIKV strain MR766(NIID), the viral genome was directly assembled into Vero cells after introduction of four overlapping synthetic fragments that cover the full-length genomic RNA sequence. Such strategy has allowed the production of a recombinant ZIKV expressing the GFP reporter gene that is stable over two culturing rounds on Vero cells. Our data demonstrate that the ZIKV reporter virus is a very reliable GFP-based tool for analyzing viral growth and measuring the neutralizing antibody as well as rapid screening of antiviral effect of different classes of inhibitors.

  15. A multichannel wide FOV infrared radiometric system

    NASA Astrophysics Data System (ADS)

    Jacobson, S.; Lissak, Z.; Yoav, Y.; Komet, Y.; Davidson, R.

    1989-07-01

    A radiometric system which consists of five IR radiometers with a mutual data acquisition system is described. The system was designed, developed and built at IAI to conduct simultaneous IR signature measurements of a high intensity source at different aspect angles. The requirement to provide a wide FOV radiometric capability led to a technical solution based on the combination of refractive and reflective optics. Each radiometer is equipped with a ZnSe lens, elliptical mirror, mechanical chopper and a thermoelectrically cooled PbSe detector. The chopper is positioned before the entrance aperture and its blades serve as an ambient temperature reference Black Body. The reference temperature is monitored by a temperature transducer. The optical layout of the radiometers and relevant ray tracing examples are demonstrated. The radiometer sensitivity and field of view response data are presented. The data acquisition as well as software capabilities are described. The system is remotely operated. Data on source intensity, at different aspect angles, may be obtained immediately after the test.

  16. A simple, low-cost staining method for rapid-throughput analysis of tumor spheroids

    PubMed Central

    Eckerdt, Frank; Alvarez, Angel; Bell, Jonathan; Arvanitis, Constadina; Iqbal, Asneha; Arslan, Ahmet D.; Hu, Bo; Cheng, Shi-Yuan; Goldman, Stewart; Platanias, Leonidas C.

    2016-01-01

    Tumor spheroids are becoming an important tool for the investigation of cancer stem cell (CSC) function in tumors; thus, low-cost and high-throughput methods for drug screening of tumor spheroids are needed. Using neurospheres as non-adherent three-dimensional (3-D) cultures, we developed a simple, low-cost acridine orange (AO)–based method that allows for rapid analysis of live neurospheres by fluorescence microscopy in a 96-well format. This assay measures the cross-section area of a spheroid, which corresponds to cell viability. Our novel method allows rapid screening of a panel of anti-proliferative drugs to assess inhibitory effects on the growth of cancer stem cells in 3-D cultures. PMID:26757811

  17. A Rapid Method for Viral Particle Detection in Viral-Induced Gastroenteritis: A TEM Study

    NASA Astrophysics Data System (ADS)

    Hicks, M. John; Barrish, James P.; Hayes, Elizabeth S.; Leer, Laurie C.; Estes, Mary K.; Cubitt, W. D.

    1995-10-01

    Infectious gastroenteritis is a common cause of hospitalization in the pediatric population. The most frequent cause of gastroenteritis is viral in origin. The purpose of this study was to compare a rapid modified negative-staining TEM method with the conventional pseudoreplica technique in detection of viral particles in fecal samples from children with viral gastroenteritis. The modified negative-staining method resulted in a significantly higher (2.5 ± 0.5, p = 0.02) viral rating score than that for the conventional pseudoreplica technique (1.7 ± 0.4). In addition, the preparation time for the negative-staining method was approximately one fifth that for the conventional pseudoreplica technique. Rapid diagnosis of viral gastroenteritis may be made by ultrastructural detection of viral particles in fecal samples using the negative staining technique.

  18. Studies on the Rapid Methods for Evaluating Seed Vigor of Sweet Corn

    NASA Astrophysics Data System (ADS)

    Zhao, Guangwu; Yang, Linlin; Wang, Jianhua; Zhu, Zhujun

    Since the germination test is still the main method for evaluating seed vigor of sweet corn, it is necessary to study the rapid methods for evaluating their vigor. First, two vigor levels of 9 super sweet corn and 9 sugar enhanced corn hybrids were distinguished by accelerated ageing treatment. Next, their vigor statuses were tested by rapid methods such as electrical conductivity (EC), soluble sugar (SS), volatile aldehyde (VA), dehydrogenase activity (DA) and Q2 oxygen sensing technology. Correlation relationship was analyzed between the above tested values and vigor performances. The results showed that EC, SS, VA, DA, oxygen metabolism rate (OMR), critical oxygen pressure (COP) were all suitable to evaluate seed vigor of sweet corn. Furthermore, VA was optimal for evaluating seed vigor of super sweet corn. DA was optimal for evaluating sugar enhanced corn.

  19. Rapid Column Extraction Method for Actinides and Sr-89/90 in Water Samples

    SciTech Connect

    MAXWELL III, SHERROD L.

    2005-06-15

    The SRS Environmental Laboratory analyzes water samples for environmental monitoring, including river water and ground water samples. A new, faster actinide and strontium 89/90 separation method has been developed and implemented to improve productivity, reduce labor costs and add capacity to this laboratory. This method uses stacked TEVA Resin{reg_sign}, TRU Resin{reg_sign} and Sr-Resin{reg_sign} cartridges from Eichrom Technologies (Darien, IL, USA) that allows the rapid separation of plutonium (Pu), neptunium (Np), uranium (U), americium (Am), curium (Cm) and thorium (Th) using a single multi-stage column combined with alpha spectrometry. By using vacuum box cartridge technology with rapid flow rates, sample preparation time is minimized. The method can be used for routine analysis or as a rapid method for emergency preparedness. Thorium and curium are often analyzed separately due to the interference of the daughter of Th-229 tracer, actinium (Ac)-225, on curium isotopes when measured by alpha spectrometry. This new method also adds a separation step using DGA Resin{reg_sign}, (Diglycolamide Resin, Eichrom Technologies) to remove Ac-225 and allow the separation and analysis of thorium isotopes and curium isotopes at the same time.

  20. Determination of rapid chlorination rate constants by a stopped-flow spectrophotometric competition kinetics method.

    PubMed

    Song, Dean; Liu, Huijuan; Qiang, Zhimin; Qu, Jiuhui

    2014-05-15

    Free chlorine is extensively used for water and wastewater disinfection nowadays. However, it still remains a big challenge to determine the rate constants of rapid chlorination reactions although competition kinetics and stopped-flow spectrophotometric (SFS) methods have been employed individually to investigate fast reaction kinetics. In this work, we proposed an SFS competition kinetics method to determine the rapid chlorination rate constants by using a common colorimetric reagent, N,N-diethyl-p-phenylenediamine (DPD), as a reference probe. A kinetic equation was first derived to estimate the reaction rate constant of DPD towards chlorine under a given pH and temperature condition. Then, on that basis, an SFS competition kinetics method was proposed to determine directly the chlorination rate constants of several representative compounds including tetracycline, ammonia, and four α-amino acids. Although Cl2O is more reactive than HOCl, its contribution to the overall chlorination kinetics of the test compounds could be neglected in this study. Finally, the developed method was validated through comparing the experimentally measured chlorination rate constants of the selected compounds with those obtained or calculated from literature and analyzing with Taft's correlation as well. This study demonstrates that the SFS competition kinetics method can measure the chlorination rate constants of a test compound rapidly and accurately.

  1. Rapid and effective DNA extraction method with bead grinding for a large amount of fungal DNA.

    PubMed

    Watanabe, M; Lee, K; Goto, K; Kumagai, S; Sugita-Konishi, Y; Hara-Kudo, Y

    2010-06-01

    To identify a rapid method for extracting a large amount of DNA from fungi associated with food hygiene, extraction methods were compared using fungal pellets formed rapidly in liquid media. Combinations of physical and chemical methods or commercial kits were evaluated with 3 species of yeast, 10 species of ascomycetous molds, and 4 species of zygomycetous molds. Bead grinding was the physical method, followed by chemical methods involving sodium dodecyl sulfate (SDS), cetyl trimethyl ammonium bromide (CTAB), and benzyl chloride and two commercial kits. Quantity was calculated by UV absorbance at 260 nm, quality was determined by the ratio of UV absorbance at 260 and 280 nm, and gene amplifications and electrophoresis profiles of whole genomes were analyzed. Bead grinding with the SDS method was the most effective for DNA extraction for yeasts and ascomycetous molds, and bead grinding with the CTAB method was most effective with zygomycetous molds. For both groups of molds, bead grinding with the CTAB method was the best approach for DNA extraction. Because this combination also is relatively effective for yeasts, it can be used to extract a large amount of DNA from a wide range of fungi. The DNA extraction methods are useful for developing gene indexes to identify fungi with molecular techniques, such as DNA fingerprinting.

  2. Rapid diagnostic methods for influenza virus in clinical specimens - A comparative study

    NASA Technical Reports Server (NTRS)

    Evans, A. S.; Olson, B.

    1982-01-01

    A comparison of five rapid viral diagnostic techniques for identifying influenza virus in nasopharyngeal aspirates has been made on patients with influenza-like illnesses. Initial results with immune electron microscopy were positive in only one of 11 specimens from which virus was isolated and further work abandoned. Four other rapid tests were carried out on 39 specimens from which influenza virus had been isolated in tissue culture in 28. Of these 28 specimens yielding virus, 24 (85.7 percent) were positive by an indirect fluorescent antibody test (IFAT) on nasopharyngeal cells, 18 (64.3 percent) by enzyme-linked immunosorbent assay (ELISA), 19 (67.8 percent) by enzyme-linked fluorescent assay (ELFA), and 26 (92.8 percent) by a rapid tissue culture amplification method (TCA) in a continuous Rhesus monkey kidney line (LLC-MK2) with identification of virus by fluorescent antibody. In terms of sensitivity, simplicity, and rapidity, a combination of the IFAT and TCA methods seems to be very useful.

  3. Development of a loop-mediated isothermal amplification method for rapid detection of pigeon circovirus.

    PubMed

    Tsai, Shinn Shyong; Chang, Yeng Ling; Huang, Yen Li; Liu, Hung Jen; Ke, Guan Ming; Chiou, Chwei Jang; Hsieh, Yao Ching; Chang, Tsung Chou; Cheng, Li Ting; Chuang, Kuo Pin

    2014-05-01

    There are no effective antiviral treatments for pigeon circovirus (PiCV); thus, rapid diagnosis is critical for effective control of the disease caused by this virus. The recent development of a novel LAMP technique that amplifies nucleic acids rapidly with high specificity and sensitivity under isothermal conditions has overcome some of the deficiencies of nucleic-acid-based diagnostic tests. We established a LAMP method for rapid detection of PiCV using two pairs of primers that were designed from PiCV and compared its sensitivity and specificity with that of PCR. Amplification by LAMP was optimal at 63 °C for 60 min. The detection limit was nearly 0.5 pg of PiCV DNA, making it ten times more sensitive than PCR. There was no cross-reaction with porcine circovirus type 2 (PCV2), pigeon Trichomonas gallinae, or pigeon herpesvirus (PHV) under the same conditions. The assay also successfully detected the pathogen DNA in the tissues of infected pigeons. This is the first report indicating that LAMP is a valuable, rapid method of detecting PiCV with high sensitivity and specificity. PMID:24193953

  4. Development of a loop-mediated isothermal amplification method for rapid detection of pigeon circovirus.

    PubMed

    Tsai, Shinn Shyong; Chang, Yeng Ling; Huang, Yen Li; Liu, Hung Jen; Ke, Guan Ming; Chiou, Chwei Jang; Hsieh, Yao Ching; Chang, Tsung Chou; Cheng, Li Ting; Chuang, Kuo Pin

    2014-05-01

    There are no effective antiviral treatments for pigeon circovirus (PiCV); thus, rapid diagnosis is critical for effective control of the disease caused by this virus. The recent development of a novel LAMP technique that amplifies nucleic acids rapidly with high specificity and sensitivity under isothermal conditions has overcome some of the deficiencies of nucleic-acid-based diagnostic tests. We established a LAMP method for rapid detection of PiCV using two pairs of primers that were designed from PiCV and compared its sensitivity and specificity with that of PCR. Amplification by LAMP was optimal at 63 °C for 60 min. The detection limit was nearly 0.5 pg of PiCV DNA, making it ten times more sensitive than PCR. There was no cross-reaction with porcine circovirus type 2 (PCV2), pigeon Trichomonas gallinae, or pigeon herpesvirus (PHV) under the same conditions. The assay also successfully detected the pathogen DNA in the tissues of infected pigeons. This is the first report indicating that LAMP is a valuable, rapid method of detecting PiCV with high sensitivity and specificity.

  5. Validation of Landsat 7 ETM+ band 6 radiometric performance

    NASA Technical Reports Server (NTRS)

    Palluconi, Frank; Hook, Simon; Abtahi, Ali; Alley, Ron

    2005-01-01

    Since shortly after launch the radiometric performance of band 6 of the ETM+ instrument on Landsat 7 has been evaluated using vicarious calbiration techniques for both land and water targets. This evaluation indicates the radiometric performance of band 6 has been both highly stable and accurate.

  6. Rapid method for the determination of 226Ra in hydraulic fracturing wastewater samples

    DOE PAGES

    Maxwell, Sherrod L.; Culligan, Brian K.; Warren, Richard A.; McAlister, Daniel R.

    2016-03-24

    A new method that rapidly preconcentrates and measures 226Ra from hydraulic fracturing wastewater samples was developed in the Savannah River Environmental Laboratory. The method improves the quality of 226Ra measurements using gamma spectrometry by providing up to 100x preconcentration of 226Ra from this difficult sample matrix, which contains very high levels of calcium, barium, strontium, magnesium and sodium. The high chemical yield, typically 80-90%, facilitates a low detection limit, important for lower level samples, and indicates method ruggedness. Ba-133 tracer is used to determine chemical yield and correct for geometry-related counting issues. The 226Ra sample preparation takes < 2 hours.

  7. Advantage of a rapid extraction method of HIV1 DNA suitable for polymerase chain reaction.

    PubMed

    Vignoli, C; de Lamballerie, X; Zandotti, C; Tamalet, C; de Micco, P

    1995-01-01

    We describe a new protocol for extraction of DNA suitable for HIV1 gene amplification from clinical samples using "Chelex-100" chelating resin. Comparison was made with the classic proteinase K extraction method; 154 specimens were extracted with both methods and subjected to PCR (polymerase chain reaction). The Chelex-100 procedure optimized the yield of DNA recovery and minimized contamination due to sample manipulation. It decreased false negative results due to PCR inhibitors. A DNA sample suitable for use in PCR was obtained in 30 minutes. Chelex-100 treatment is a simple, rapid and low-cost method for DNA extraction in clinical laboratories.

  8. High-throughput radiometric CYP2C19 inhibition assay using tritiated (S)-mephenytoin.

    PubMed

    Di Marco, Annalise; Cellucci, Antonella; Chaudhary, Ashok; Fonsi, Massimiliano; Laufer, Ralph

    2007-10-01

    A rapid and sensitive radiometric assay for assessing the potential of drugs to inhibit cytochrome P450 (P450) 2C19 in human liver microsomes is described. The new assay, which does not require high-performance liquid chromatography (HPLC) separation or mass spectrometric detection, is based on the release of tritium as tritiated water that occurs upon CYP2C19-mediated 4'-hydroxylation of (S)-mephenytoin labeled with tritium in the 4' position. Because this reaction is subject to an NIH shift, tritium was also introduced into the 3'- and 5'-positions of the tracer to enhance formation of a tritiated water product. Tritiated water was separated from the substrate using 96-well solid-phase extraction plates. The reaction is NADPH-dependent and sensitive to CYP2C19 inhibitors. IC(50) values for 15 diverse drugs differed less than 2.5-fold from those determined by quantification of the unlabeled 4'-hydroxy-(S)-mephenytoin product, using HPLC coupled to mass spectrometric detection. All of the steps of the new assay, namely incubation, product separation, and radioactivity counting, are performed in a 96-well format and can be automated. This assay represents a non-HPLC, high-throughput version of the classic (S)-mephenytoin 4'-hydroxylation assay, which is the most widely used method to assess the potential for CYP2C19 inhibition of new chemical entities.

  9. RAPID METHOD FOR PLUTONIUM, AMERICIUM AND CURIUM IN VERY LARGE SOIL SAMPLES

    SciTech Connect

    Maxwell, S

    2007-01-08

    The analysis of actinides in environmental soil and sediment samples is very important for environmental monitoring. There is a need to measure actinide isotopes with very low detection limits. A new, rapid actinide separation method has been developed and implemented that allows the measurement of plutonium, americium and curium isotopes in very large soil samples (100-200 g) with high chemical recoveries and effective removal of matrix interferences. This method uses stacked TEVA Resin{reg_sign}, TRU Resin{reg_sign} and DGA-Resin{reg_sign} cartridges from Eichrom Technologies (Darien, IL, USA) that allows the rapid separation of plutonium (Pu), americium (Am), and curium (Cm) using a single multistage column combined with alpha spectrometry. The method combines an acid leach step and innovative matrix removal using cerium fluoride precipitation to remove the difficult soil matrix. This method is unique in that it provides high tracer recoveries and effective removal of interferences with small extraction chromatography columns instead of large ion exchange resin columns that generate large amounts of acid waste. By using vacuum box cartridge technology with rapid flow rates, sample preparation time is minimized.

  10. Application of Rapid Prototyping Methods to High-Speed Wind Tunnel Testing

    NASA Technical Reports Server (NTRS)

    Springer, A. M.

    1998-01-01

    This study was undertaken in MSFC's 14-Inch Trisonic Wind Tunnel to determine if rapid prototyping methods could be used in the design and manufacturing of high speed wind tunnel models in direct testing applications, and if these methods would reduce model design/fabrication time and cost while providing models of high enough fidelity to provide adequate aerodynamic data, and of sufficient strength to survive the test environment. Rapid prototyping methods utilized to construct wind tunnel models in a wing-body-tail configuration were: fused deposition method using both ABS plastic and PEEK as building materials, stereolithography using the photopolymer SL-5170, selective laser sintering using glass reinforced nylon, and laminated object manufacturing using plastic reinforced with glass and 'paper'. This study revealed good agreement between the SLA model, the metal model with an FDM-ABS nose, an SLA nose, and the metal model for most operating conditions, while the FDM-ABS data diverged at higher loading conditions. Data from the initial SLS model showed poor agreement due to problems in post-processing, resulting in a different configuration. A second SLS model was tested and showed relatively good agreement. It can be concluded that rapid prototyping models show promise in preliminary aerodynamic development studies at subsonic, transonic, and supersonic speeds.

  11. Radiometric performance of the Viking Mars lander cameras

    NASA Technical Reports Server (NTRS)

    Huck, F. O.; Burcher, E. E.; Taylor, E. J.; Wall, S. D.

    1975-01-01

    The Viking lander cameras feature an array of 12 silicon photodiodes for electronic focus selection and multispectral imaging. Comparisons of absolute radiometric calibrations of the four cameras selected for the mission to Mars with performance predictions based on their design data revealed minor discrepancies. These discrepancies were caused primarily by the method used to calibrate the photosensor array and apparently also from light reflections internal to the array. The sensitivity and dynamic range of all camera channels are found to be sufficient for high quality pictures, providing that the commandable gains and offsets can be optimized for the scene radiance; otherwise, the quantization noise may be too high or the dynamic range too low for an adequate characterization of the scene.

  12. Radiometric Calibrations, Measurements, and Standards Development at NREL: Preprint

    SciTech Connect

    Myers, D. R.; Andreas, A.; Stoffel, T.; Reda, I.; Wilcox, S.; Gotseff, P.; Kay, B.

    2001-10-01

    Presented at the 2001 NCPV Program Review Meeting: Radiometric calibrations, measurements, and standards development at NREL. We describe proposed revisions to current reference standard spectral distributions used to evaluate photovoltaic device performance and durability of materials. Improvements in broadband outdoor radiometer calibrations reduce uncertainties in broadband radiometer calibrations. We report a method to quantify the rate of change of broadband radiometer responsivities as a function of integrated exposure to irradiance and thermal energy. The results of applying a vector of calibration factors or responsivities to field data to remove zenith-angle dependent errors in global solar radiation measurements are shown. We report on the relative sensitivity of radiometers to daily versus biweekly cleaning.

  13. [In-flight absolute radiometric calibration of UAV multispectral sensor].

    PubMed

    Chen, Wei; Yan, Lei; Gou, Zhi-Yang; Zhao, Hong-Ying; Liu, Da-Ping; Duan, Yi-Ni

    2012-12-01

    Based on the data of the scientific experiment in Urad Front Banner for UAV Remote Sensing Load Calibration Field project, with the help of 6 hyperspectral radiometric targets with good Lambertian property, the wide-view multispectral camera in UAV was calibrated adopting reflectance-based method. The result reveals that for green, red and infrared channel, whose images were successfully captured, the linear correlation coefficients between the DN and radiance are all larger than 99%. In final analysis, the comprehensive error is no more than 6%. The calibration results demonstrate that the hyperspectral targets equipped by the calibration field are well suitable for air-borne multispectral load in-flight calibration. The calibration result is reliable and could be used in the retrieval of geophysical parameters.

  14. Active radiometric calorimeter for absolute calibration of radioactive sources

    SciTech Connect

    Stump, K.E.; DeWerd, L.A.; Rudman, D.A.; Schima, S.A.

    2005-03-01

    This report describes the design and initial noise floor measurements of a radiometric calorimeter designed to measure therapeutic medical radioactive sources. The instrument demonstrates a noise floor of approximately 2 nW. This low noise floor is achieved by using high temperature superconducting (HTS) transition edge sensor (TES) thermometers in a temperature-control feedback loop. This feedback loop will be used to provide absolute source calibrations based upon the electrical substitution method. Other unique features of the calorimeter are (a) its ability to change sources for calibration without disrupting the vacuum of the instrument, and (b) the ability to measure the emitted power of a source in addition to the total contained source power.

  15. A rapid bioassay method for the determination of 90Sr in human urine sample.

    PubMed

    Sadi, Baki B; Li, Chunsheng; Jodayree, Sara; Lai, Edward P C; Kochermin, Vera; Kramer, Gary H

    2010-06-01

    A rapid bioassay method has been developed for the determination of (90)Sr in human urine samples. The method is based on on-cartridge decolourisation of urine sample, separation of (90)Y from (90)Sr on an anion exchange resin column and by determination of (90)Sr using a liquid scintillation analyser (LSA). Separation of (90)Y from (90)Sr was achieved through selective complexation of yttrium with phosphate and subsequent retention of the anionic yttrium phosphate species on anion exchange resin. A total recovery of 97 +/- 2 % was obtained for strontium with three washes. The minimum detectable activity for the method was 0.2 Bq or 40 Bq l(-1). Measurement accuracy (relative bias, B(r)) and repeatability (relative precision, S(B)) of the method for the determination of (90)Sr were found to be -1 and 4.7 %, respectively. Excellent linearity (r(2) > 0.999) was established over an activity range from 3.25 x 10(2) to 3.25 x 10(4) Bq l(-1). The method was also found to be very robust (S(B) < 5 %) against the matrix effect from different urine samples. Performance of the rapid bioassay method for sensitivity, accuracy and repeatability evaluated against the performance criteria for radiobioassay (ANSI N13.30) was found to be in compliant. Considering the simplicity, excellent analytical figures of merit, fast sample turnaround time (<1 h) and cost efficiency (<30 USD per sample) of the developed method, it is very promising as a rapid bioassay method for supporting the medical response to an emergency where internal contamination of (90)Sr is involved.

  16. Melting Temperature Mapping Method: A Novel Method for Rapid Identification of Unknown Pathogenic Microorganisms within Three Hours of Sample Collection.

    PubMed

    Niimi, Hideki; Ueno, Tomohiro; Hayashi, Shirou; Abe, Akihito; Tsurue, Takahiro; Mori, Masashi; Tabata, Homare; Minami, Hiroshi; Goto, Michihiko; Akiyama, Makoto; Yamamoto, Yoshihiro; Saito, Shigeru; Kitajima, Isao

    2015-07-28

    Acquiring the earliest possible identification of pathogenic microorganisms is critical for selecting the appropriate antimicrobial therapy in infected patients. We herein report the novel "melting temperature (Tm) mapping method" for rapidly identifying the dominant bacteria in a clinical sample from sterile sites. Employing only seven primer sets, more than 100 bacterial species can be identified. In particular, using the Difference Value, it is possible to identify samples suitable for Tm mapping identification. Moreover, this method can be used to rapidly diagnose the absence of bacteria in clinical samples. We tested the Tm mapping method using 200 whole blood samples obtained from patients with suspected sepsis, 85% (171/200) of which matched the culture results based on the detection level. A total of 130 samples were negative according to the Tm mapping method, 98% (128/130) of which were also negative based on the culture method. Meanwhile, 70 samples were positive according to the Tm mapping method, and of the 59 suitable for identification, 100% (59/59) exhibited a "match" or "broad match" with the culture or sequencing results. These findings were obtained within three hours of whole blood collection. The Tm mapping method is therefore useful for identifying infectious diseases requiring prompt treatment.

  17. Fuji apple storage time rapid determination method using Vis/NIR spectroscopy

    PubMed Central

    Liu, Fuqi; Tang, Xuxiang

    2015-01-01

    Fuji apple storage time rapid determination method using visible/near-infrared (Vis/NIR) spectroscopy was studied in this paper. Vis/NIR diffuse reflection spectroscopy responses to samples were measured for 6 days. Spectroscopy data were processed by stochastic resonance (SR). Principal component analysis (PCA) was utilized to analyze original spectroscopy data and SNR eigen value. Results demonstrated that PCA could not totally discriminate Fuji apples using original spectroscopy data. Signal-to-noise ratio (SNR) spectrum clearly classified all apple samples. PCA using SNR spectrum successfully discriminated apple samples. Therefore, Vis/NIR spectroscopy was effective for Fuji apple storage time rapid discrimination. The proposed method is also promising in condition safety control and management for food and environmental laboratories. PMID:25874818

  18. Evaluation of methods for rapid determination of freezing point of aviation fuels

    NASA Technical Reports Server (NTRS)

    Mathiprakasam, B.

    1982-01-01

    Methods for identification of the more promising concepts for the development of a portable instrument to rapidly determine the freezing point of aviation fuels are described. The evaluation process consisted of: (1) collection of information on techniques previously used for the determination of the freezing point, (2) screening and selection of these techniques for further evaluation of their suitability in a portable unit for rapid measurement, and (3) an extensive experimental evaluation of the selected techniques and a final selection of the most promising technique. Test apparatuses employing differential thermal analysis and the change in optical transparency during phase change were evaluated and tested. A technique similar to differential thermal analysis using no reference fuel was investigated. In this method, the freezing point was obtained by digitizing the data and locating the point of inflection. Results obtained using this technique compare well with those obtained elsewhere using different techniques. A conceptual design of a portable instrument incorporating this technique is presented.

  19. [A rapid prototype fabrication method of dental splint based on 3D simulation and technology].

    PubMed

    Lin, Yanping; Chen, Xiaojun; Zhang, Shilei; Wang, Chengtao

    2006-04-01

    The conventional design and fabrication of the dental splint (in orthognathic surgery) is based on the preoperative planning and model surgery so this process is of low precision and efficiency. In order to solve the problems and be up to the trend of computer-assisted surgery, we have developed a novel method to design and fabricate the dental splint--computer-generated dental splint, which is based on three-dimensional model simulation and rapid prototype technology. After the surgical planning and simulation of 3D model, we can modify the model to be superior in chewing action (functional) and overall facial appearance (aesthetic). Then, through the Boolean operation of the dental splint blank and the maxillofacial bone model the model of dental splint is formed. At last, the dental splint model is fabricated through rapid prototype machine and applied in clinic. The result indicates that, with the use of this method, the surgical precision and efficiency are improved.

  20. A Rapid and Economical Method for Efficient DNA Extraction from Diverse Soils Suitable for Metagenomic Applications.

    PubMed

    Devi, Selvaraju Gayathri; Fathima, Anwar Aliya; Radha, Sudhakar; Arunraj, Rex; Curtis, Wayne R; Ramya, Mohandass

    2015-01-01

    A rapid, cost effective method of metagenomic DNA extraction from soil is a useful tool for environmental microbiology. The present work describes an improved method of DNA extraction namely "powdered glass method" from diverse soils. The method involves the use of sterile glass powder for cell lysis followed by addition of 1% powdered activated charcoal (PAC) as purifying agent to remove humic substances. The method yielded substantial DNA (5.87 ± 0.04 μg/g of soil) with high purity (A260/280: 1.76 ± 0.05) and reduced humic substances (A340: 0.047 ± 0.03). The quality of the extracted DNA was compared against five different methods based on 16S rDNA PCR amplification, BamHI digestion and validated using quantitative PCR. The digested DNA was used for a metagenomic library construction with the transformation efficiency of 4 X 106 CFU mL-1. Besides providing rapid, efficient and economical extraction of metgenomic DNA from diverse soils, this method's applicability is also demonstrated for cultivated organisms (Gram positive B. subtilis NRRL-B-201, Gram negative E. coli MTCC40, and a microalgae C. sorokiniana UTEX#1666). PMID:26167854

  1. Efficiency of passive magnetic-confinement methods for rapidly rotating rings

    NASA Astrophysics Data System (ADS)

    Hull, John R.

    1985-11-01

    Rapidly rotating, large-diameter rings have potential for use as low-cost electrical-energy storage devices. The efficiency of passive electromagnetic and electrodynamic methods to confine the rotating rings is investigated. Confinement methods examined include repulsive image force, repulsive null flux, attractive image force, and radially stable attractive. For each method the decay time is given in terms of the ring material properties and design parameters. The repulsive techniques are shown to have decay times of less than a day when optimized within a set of practical design constraints. The two attractive levitation methods result in the largest decay times, but are inherently unstable. When null-flux stabilizers are used with attractive levitation, the decay time is shown to depend on magnetic field inhomogeneity. Finally, an inherently stable and very efficient attractive levitation method is proposed. The new method is based on an analogy with alternating-gradient synchrotrons and should have application in high-speed ground transportation.

  2. Rapid direct methods for enumeration of specific, active bacteria in water and biofilms

    NASA Technical Reports Server (NTRS)

    McFeters, G. A.; Pyle, B. H.; Lisle, J. T.; Broadaway, S. C.

    1999-01-01

    Conventional methods for detecting indicator and pathogenic bacteria in water may underestimate the actual population due to sublethal environmental injury, inability of the target bacteria to take up nutrients and other physiological factors which reduce bacterial culturability. Rapid and direct methods are needed to more accurately detect and enumerate active bacteria. Such a methodological advance would provide greater sensitivity in assessing the microbiological safety of water and food. The principle goal of this presentation is to describe novel approaches we have formulated for the rapid and simultaneous detection of bacteria plus the determination of their physiological activity in water and other environmental samples. The present version of our method involves the concentration of organisms by membrane filtration or immunomagnetic separation and combines an intracellular fluorochrome (CTC) for assessment of respiratory activity plus fluorescent-labelled antibody detection of specific bacteria. This approach has also been successfully used to demonstrate spatial and temporal heterogeneities of physiological activities in biofilms when coupled with cryosectioning. Candidate physiological stains include those capable of determining respiratory activity, membrane potential, membrane integrity, growth rate and cellular enzymatic activities. Results obtained thus far indicate that immunomagnetic separation can provide a high degree of sensitivity in the recovery of seeded target bacteria (Escherichia coli O157:H7) in water and hamburger. The captured and stained target bacteria are then enumerated by either conventional fluorescence microscopy or ChemScan(R), a new instrument that is very sensitive and rapid. The ChemScan(R) laser scanning instrument (Chemunex, Paris, France) provides the detection of individual fluorescently labelled bacterial cells using three emission channels in less than 5 min. A high degree of correlation has been demonstrated between

  3. Method for rapid base sequencing in DNA and RNA with two base labeling

    DOEpatents

    Jett, James H.; Keller, Richard A.; Martin, John C.; Posner, Richard G.; Marrone, Babetta L.; Hammond, Mark L.; Simpson, Daniel J.

    1995-01-01

    Method for rapid-base sequencing in DNA and RNA with two-base labeling and employing fluorescent detection of single molecules at two wavelengths. Bases modified to accept fluorescent labels are used to replicate a single DNA or RNA strand to be sequenced. The bases are then sequentially cleaved from the replicated strand, excited with a chosen spectrum of electromagnetic radiation, and the fluorescence from individual, tagged bases detected in the order of cleavage from the strand.

  4. Method for rapid base sequencing in DNA and RNA with two base labeling

    DOEpatents

    Jett, J.H.; Keller, R.A.; Martin, J.C.; Posner, R.G.; Marrone, B.L.; Hammond, M.L.; Simpson, D.J.

    1995-04-11

    A method is described for rapid-base sequencing in DNA and RNA with two-base labeling and employing fluorescent detection of single molecules at two wavelengths. Bases modified to accept fluorescent labels are used to replicate a single DNA or RNA strand to be sequenced. The bases are then sequentially cleaved from the replicated strand, excited with a chosen spectrum of electromagnetic radiation, and the fluorescence from individual, tagged bases detected in the order of cleavage from the strand. 4 figures.

  5. Visible/infrared radiometric calibration station

    SciTech Connect

    Byrd, D.A.; Maier, W.B. II; Bender, S.C.; Holland, R.F.; Michaud, F.D.; Luettgen, A.L.; Christensen, R.W.; O`Brian, T.R.

    1994-07-01

    We have begun construction of a visible/infrared radiometric calibration station that will allow for absolute calibration of optical and IR remote sensing instruments with clear apertures less than 16 inches in diameter in a vacuum environment. The calibration station broadband sources will be calibrated at the National Institute of Standards and Technology (NIST) and allow for traceable absolute radiometric calibration to within {plus_minus}3% in the visible and near IR (0.4--2.5 {mu}m), and less than {plus_minus}1% in the infrared, up to 12 {mu}m. Capabilities for placing diffraction limited images or for sensor full-field flooding will exist. The facility will also include the calibration of polarization and spectral effects, spatial resolution, field of view performance, and wavefront characterization. The configuration of the vacuum calibration station consists of an off-axis 21 inch, f/3.2, parabolic collimator with a scanning fold flat in collimated space. The sources are placed, via mechanisms to be described, at the focal plane of the off-axis parabola. Vacuum system pressure will be in the 10{sup {minus}6} Torr range. The broadband white-light source is a custom design by LANL with guidance from Labsphere Inc. The continuous operating radiance of the integrating sphere will be from 0.0--0.006 W/cm{sup 2}/Sr/{mu}m (upper level quoted for {approximately}500 nm wavelength). The blackbody source is also custom designed at LANL with guidance from NIST. The blackbody temperature will be controllable between 250--350{degrees}K. Both of the above sources have 4.1 inch apertures with estimated radiometric instability at less than 1%. The designs of each of these units will be described. The monochromator and interferometer light sources are outside the vacuum, but all optical relay and beam shaping optics are enclosed within the vacuum calibration station. These sources are described, as well as the methodology for alignment and characterization.

  6. Thematic mapper: detailed radiometric and geometric characteristics

    USGS Publications Warehouse

    Kieffer, Hugh

    1983-01-01

    Those radiometric characteristics of the Landsat 4 Thematic Mapper (TM) that can be established without absolute calibration of spectral data have been examined. Subscenes of radiometric all raw data (B-data) were examined on an individual detector basis: areas of uniform radiance were used to characterize subtle radiometric differences and noise problems. A variety of anomalies have been discovered with magnitude of a few digital levels or less: the only problem not addressable by ground processing is irregular width of the digital levels. Essentially all of this non-ideal performance is incorporated in the fully processed (P-type) images, but disguised by the geometric resampling procedure. The overall performance of the Thematic Mapper is a great improvement over previous Landsat scanners. The effective resolution in radiance is degraded by about a factor of two by irregular width of the digital levels. Several detectors have a change of gain with a period of several scans, the largest effect is about 4%. These detectors appear to switch between two response levels during scan direction reversal; there is no apparent periodicity to these changes. This can cause small apparent difference between forward and reverse scans for portions of an image. The high-frequency noise level of each detector was characterized by the standard deviation of the first derivative in the sample direction across a flat field. Coherent sinusoidal noise patterns were determined using one-dimensional Fourier transforms. A "stitching" pattern in Band 1 has a period of 13.8 samples with a peak-to-peak amplitude ranging from 1 to 5 DN. Noise with a period of 3.24 samples is pronounced for most detectors in band 1, to a lesser extent in bands 2, 3, and 4, and below background noise levels in bands 5, 6, and 7. The geometric fidelity of the GSFC film writer used for Thematic Mapper (TM) images was assessed by measurement with accuracy bette than three micrometers of a test grid. A set of 55

  7. An Innovative Method for Rapid Identification and Detection of Vibrio alginolyticus in Different Infection Models

    PubMed Central

    Fu, Kaifei; Li, Jun; Wang, Yuxiao; Liu, Jianfei; Yan, He; Shi, Lei; Zhou, Lijun

    2016-01-01

    Vibrio alginolyticus is one of the most common pathogenic marine Vibrio species, and has been found to cause serious seafood-poisoning or fatal extra-intestinal infections in humans, such as necrotizing soft-tissue infections, bacteremia, septic shock, and multiple organ failures. Delayed accurate diagnosis and treatment of most Vibrio infections usually result to high mortality rates. The objective of this study was to establish a rapid diagnostic method to detect and identify the presence of V. alginolyticus in different samples, so as to facilitate timely treatment. The widely employed conventional methods for detection of V. alginolyticus include biochemical identification and a variety of PCR methods. The former is of low specificity and time-consuming (2–3 days), while the latter has improved accuracy and processing time. Despite such advancements, these methods are still complicated, time-consuming, expensive, require expertise and advanced laboratory systems, and are not optimal for field use. With the goal of providing a simple and efficient way to detect V. alginolyticus, we established a rapid diagnostic method based on loop-mediated Isothermal amplification (LAMP) technology that is feasible to use in both experimental and field environments. Three primer pairs targeting the toxR gene of V. alginolyticus were designed, and amplification was carried out in an ESE tube scanner and Real-Time PCR device. We successfully identified 93 V. alginolyticus strains from a total of 105 different bacterial isolates and confirmed their identity by 16s rDNA sequencing. We also applied this method on infected mouse blood and contaminated scallop samples, and accurate results were both easily and rapidly (20–60 min) obtained. Therefore, the RT-LAMP assay we developed can be conveniently used to detect the presence of V. alginolyticus in different samples. Furthermore, this method will also fulfill the gap for real-time screening of V. alginolyticus infections

  8. A Direct and Rapid Method to Determine Cyanide in Urine by Capillary Electrophoresis

    PubMed Central

    Zhang, Qiyang; Maddukuri, Naveen; Gong, Maojun

    2015-01-01

    Cyanides are poisonous chemicals that widely exist in nature and industrial processes as well as accidental fires. Rapid and accurate determination of cyanide exposure would facilitate forensic investigation, medical diagnosis, and chronic cyanide monitoring. Here, a rapid and direct method was developed for the determination of cyanide ions in urinary samples. This technique was based on an integrated capillary electrophoresis system coupled with laser-induced fluorescence (LIF) detection. Cyanide ions were derivatized with naphthalene-2,3-dicarboxaldehyde (NDA) and a primary amine (glycine) for LIF detection. Three separate reagents, NDA, glycine, and cyanide sample, were mixed online, which secured uniform conditions between samples for cyanide derivatization and reduced the risk of precipitation formation of mixtures. Conditions were optimized; the derivatization was completed in 2-4 minutes, and the separation was observed in 25 s. The limit of detection (LOD) was 4.0 nM at 3-fold signal-to-noise ratio for standard cyanide in buffer. The cyanide levels in urine samples from smokers and non-smokers were determined by using the method of standard addition, which demonstrated significant difference of cyanide levels in urinary samples from the two groups of people. The developed method was rapid and accurate, and is anticipated to be applicable to cyanide detection in waste water with appropriate modification. PMID:26342870

  9. Rapid method to determine 89Sr/90Sr in large concrete samples

    DOE PAGES

    Maxwell, Sherrod L.; Culligan, Brian; Hutchison, Jay B.; Utsey, Robin C.; Sudowe, Ralf; McAlister, Daniel R.

    2016-03-24

    Here, a new rapid method has been developed that provides high quality low-level measurements of 89,90Sr in concrete samples with an MDA (Minimum Detectable Activity) of <1 mBq g-1. The new method is fast, meets new decommissioning regulatory limits and is robust even if refractory particles are present. The method utilizes a rapid fusion to ensure total dissolution of samples and rapid preconcentration and separation of 89,90Sr from 5-10 g concrete samples. When, the 89Sr/90Sr ratio is high, Sr can be isolated from up to 5g concrete samples, total 89/90Sr measured, and then 90Sr determined via 90Y separated after amore » period of ingrowth. Another approach allows the immediate determination of 90Sr in 10 g concrete aliquots without waiting for 90Y ingrowth, in instances where the shorter lived 89Sr is unlikely to be encountered.« less

  10. A high throughput method for rapid screening of chitosanase-producing fungal strain under acidic conditions.

    PubMed

    Ding, Su; Chen, Gui-Guang; Liang, Zhi-Qun; Zeng, Wei; Cao, Mu-Ming; Chen, Guo-Pin; Xie, Shu-Yu; Li, Wei

    2016-11-01

    A novel high-throughput method was established for rapid screening of a large numbers of Aspergillus fumigatus (A. fumigatus) mutants with high chitosanase production under acidic culture condition by exploiting the fact that iodine can be used as the indicator to stain chitosan but is ineffective for chitooligosaccharides. The mutant population was generated by irradiating A. fumigatus CICC 2434 with Co(60)-γ rays. Mutants were cultured on acidic plates containing colloidal chitosan and preliminary screened according to diameter of haloes formed around colonies. Then, chitosanase production of the isolates were verified by dinitrosalicylic acid assay. Lastly, molecular masses on enzymolysis products of isolated mutants were rapidly compared by aniline blue plate assay. Using this method, the mutant strain Co-8 was selected, which had chitosanase activity of 24.87 U/mL (increased by 369.2 % as compared to that of its parental strain).Taking together, the method is easy, efficient and particularly suited to rapid screen acidophilic fungal strains with high chitosanase-production. PMID:27628334

  11. A direct and rapid method to determine cyanide in urine by capillary electrophoresis.

    PubMed

    Zhang, Qiyang; Maddukuri, Naveen; Gong, Maojun

    2015-10-01

    Cyanides are poisonous chemicals that widely exist in nature and industrial processes as well as accidental fires. Rapid and accurate determination of cyanide exposure would facilitate forensic investigation, medical diagnosis, and chronic cyanide monitoring. Here, a rapid and direct method was developed for the determination of cyanide ions in urinary samples. This technique was based on an integrated capillary electrophoresis system coupled with laser-induced fluorescence (LIF) detection. Cyanide ions were derivatized with naphthalene-2,3-dicarboxaldehyde (NDA) and a primary amine (glycine) for LIF detection. Three separate reagents, NDA, glycine, and cyanide sample, were mixed online, which secured uniform conditions between samples for cyanide derivatization and reduced the risk of precipitation formation of mixtures. Conditions were optimized; the derivatization was completed in 2-4min, and the separation was observed in 25s. The limit of detection (LOD) was 4.0nM at 3-fold signal-to-noise ratio for standard cyanide in buffer. The cyanide levels in urine samples from smokers and non-smokers were determined by using the method of standard addition, which demonstrated significant difference of cyanide levels in urinary samples from the two groups of people. The developed method was rapid and accurate, and is anticipated to be applicable to cyanide detection in waste water with appropriate modification.

  12. A Low Complexity Rapid Molecular Method for Detection of Clostridium difficile in Stool

    PubMed Central

    McElgunn, Cathal J.; Pereira, Clint R.; Parham, Nicholas J.; Smythe, James E.; Wigglesworth, Michael J.; Smielewska, Anna; Parmar, Surendra A.; Gandelman, Olga A.; Brown, Nicholas M.; Tisi, Laurence C.; Curran, Martin D.

    2014-01-01

    Here we describe a method for the detection of Clostridium difficile from stool using a novel low-complexity and rapid extraction process called Heat Elution (HE). The HE method is two-step and takes just 10 minutes, no specialist instruments are required and there is minimal hands-on time. A test method using HE was developed in conjunction with Loop-mediated Isothermal Amplification (LAMP) combined with the real-time bioluminescent reporter system known as BART targeting the toxin B gene (tcdB). The HE-LAMP-BART method was evaluated in a pilot study on clinical fecal samples (tcdB+, n =  111; tcdB−, n  = 107). The HE-LAMP-BART method showed 95.5% sensitivity and 100% specificity against a gold standard reference method using cytotoxigenic culture and also a silica-based robotic extraction followed by tcdB PCR to control for storage. From sample to result, the HE-LAMP-BART method typically took 50 minutes, whereas the PCR method took >2.5 hours. In a further study (tcdB+, n =  47; tcdB−, n  = 28) HE-LAMP-BART was compared to an alternative commercially available LAMP-based method, Illumigene (Meridian Bioscience, OH), and yielded 87.2% sensitivity and 100% specificity for the HE-LAMP-BART method compared to 76.6% and 100%, respectively, for Illumigene against the reference method. A subset of 27 samples (tcdB+, n =  25; tcdB−, n  = 2) were further compared between HE-LAMP-BART, Illumigene, GeneXpert (Cepheid, Sunnyvale, CA) and RIDA®QUICK C. difficile Toxin A/B lateral flow rapid test (R-Biopharm, Darmstadt, Germany) resulting in sensitivities of HE-LAMP-BART 92%, Illumigene 72% GeneXpert 96% and RIDAQuick 76% against the reference method. The HE-LAMP-BART method offers the advantages of molecular based approaches without the cost and complexity usually associated with molecular tests. Further, the rapid time-to-result and simple protocol means the method can be applied away from the centralized laboratory settings. PMID:24416173

  13. Improved capabilities of the Chinese high-resolution remote sensing satellite GF-1 for monitoring suspended particulate matter (SPM) in inland waters: Radiometric and spatial considerations

    NASA Astrophysics Data System (ADS)

    Li, Jian; Chen, Xiaoling; Tian, Liqiao; Huang, Jue; Feng, Lian

    2015-08-01

    Dominated by high dynamic and small-scale variability, remote sensing of inland or coastal waters is frequently impended by insufficient spatial resolutions from conventional ocean color sensors. With the urgent need and the rapid progress in high-resolution earth observation systems (HR), it is critical to assess the capabilities of HR in inland water monitoring. In this study, the radiometric and spatial performance of the Chinese high-resolution GF-1 Wide Field Imager (WFI) data for water quality monitoring were evaluated in term of the signal-to-noise ratio (SNR), sensitivity to suspended particulate matter (SPM) variations and spatial depiction ability. The SNR was statistically estimated from variable moving window method, and the radiometric sensitivity was simulated using the Moderate Resolution Atmospheric Transmission (MODTRAN) under varied surface and atmospheric conditions. Results indicated that both the SNR and the radiometric sensitivity of the GF-1 WFI were enhanced by 3-5 times than its predecessor (Chinese HJ-1 CCD) or Landsat 7 Enhanced Thematic Mapper Plus (ETM+), and were comparable to Landsat 8 Operational Land Imager (OLI) and Moderate Resolution Imaging Spectroradiometer (MODIS) medium-resolution bands (250 and 500 m), which have been extensively applied in inland water environment monitoring. Cross comparisons demonstrated high consistency of the spatial distribution and concentration of SPM maps between GF-1 WFI and Landsat 8 OLI. Furthermore, more than 75% of the spatial variations in high turbid waters were resolved from GF-1 WFI data, whereas the ability dropped to 40% when the spatial resolution was degraded to 250 m (MODIS-like sensors). Overall, GF-1 WFI is extraordinarily promising with an enhanced SNR, an increased spectral sensitivity to SPM variations and an advanced spatial resolution. With the ongoing plans of the successive GF series (2-7), the findings would serve as a reference for forthcoming applications, and are critical

  14. Rapid method to detect duplex formation in sequencing by hybridization methods

    DOEpatents

    Mirzabekov, Andrei Darievich; Timofeev, Edward Nikolaevich; Florentiev, Vladimer Leonidovich; Kirillov, Eugene Vladislavovich

    1999-01-01

    A method for determining the existence of duplexes of oligonucleotide complementary molecules is provided whereby a plurality of immobilized oligonucleotide molecules, each of a specific length and each having a specific base sequence, is contacted with complementary, single stranded oligonucleotide molecules to form a duplex so as to facilitate intercalation of a fluorescent dye between the base planes of the duplex. The invention also provides for a method for constructing oligonucleotide matrices comprising confining light sensitive fluid to a surface, exposing said light-sensitive fluid to a light pattern so as to cause the fluid exposed to the light to coalesce into discrete units and adhere to the surface; and contacting each of the units with a set of different oligonucleotide molecules so as to allow the molecules to disperse into the units.

  15. Rapid method to detect duplex formation in sequencing by hybridization methods

    DOEpatents

    Mirzabekov, A.D.; Timofeev, E.N.; Florentiev, V.L.; Kirillov, E.V.

    1999-01-19

    A method for determining the existence of duplexes of oligonucleotide complementary molecules is provided. A plurality of immobilized oligonucleotide molecules, each of a specific length and each having a specific base sequence, is contacted with complementary, single stranded oligonucleotide molecules to form a duplex. Each duplex facilitates intercalation of a fluorescent dye between the base planes of the duplex. The invention also provides for a method for constructing oligonucleotide matrices comprising confining light sensitive fluid to a surface and exposing the light-sensitive fluid to a light pattern. This causes the fluid exposed to the light to coalesce into discrete units and adhere to the surface. This places each of the units in contact with a set of different oligonucleotide molecules so as to allow the molecules to disperse into the units. 13 figs.

  16. Interactive Rapid Dose Assessment Model (IRDAM): reactor-accident assessment methods. Vol. 2

    SciTech Connect

    Poeton, R.W.; Moeller, M.P.; Laughlin, G.J.; Desrosiers, A.E.

    1983-05-01

    As part of the continuing emphasis on emergency preparedness, the US Nuclear Regulatory Commission (NRC) sponsored the development of a rapid dose assessment system by Pacific Northwest Laboratory (PNL). This system, the Interactive Rapid Dose Assessment Model (IRDAM) is a micro-computer based program for rapidly assessing the radiological impact of accidents at nuclear power plants. This document describes the technical bases for IRDAM including methods, models and assumptions used in calculations. IRDAM calculates whole body (5-cm depth) and infant thyroid doses at six fixed downwind distances between 500 and 20,000 meters. Radionuclides considered primarily consist of noble gases and radioiodines. In order to provide a rapid assessment capability consistent with the capacity of the Osborne-1 computer, certain simplifying approximations and assumptions are made. These are described, along with default values (assumptions used in the absence of specific input) in the text of this document. Two companion volumes to this one provide additional information on IRDAM. The user's Guide (NUREG/CR-3012, Volume 1) describes the setup and operation of equipment necessary to run IRDAM. Scenarios for Comparing Dose Assessment Models (NUREG/CR-3012, Volume 3) provides the results of calculations made by IRDAM and other models for specific accident scenarios.

  17. Radiometric characterization of the NASA GSFC radiometric calibration facility primary transfer radiometer

    NASA Astrophysics Data System (ADS)

    Cooper, John W.; Brown, Steven W.; Abel, Peter; Marketon, John E.; Butler, James J.

    2004-11-01

    As part of an effort to reduce uncertainties in the radiometric calibrations of integrating sphere sources and standard lamp irradiance sources, the Goddard Space Flight Center (GSFC) Radiometric Calibration Facility (RCF) primary radiometer was characterized at the NIST facility for Spectral Irradiance and Radiance Calibrations with Uniform Sources (SIRCUS). Specifically, the radiometer's slit spectral function was measured and the magnitude of out-of-band stray light was determined. The characterization also revealed significant contributions of spectral stray light due to fluorescence of the radiometer's input sphere. The RCF examined the effects of stray light and sphere fluorescence in the radiometer on source radiance calibrations along with approaches to reduce those sources of measurement error.

  18. A rapid and enhanced DNA detection method for crop cultivar discrimination.

    PubMed

    Monden, Yuki; Takasaki, Kazuto; Futo, Satoshi; Niwa, Kousuke; Kawase, Mitsuo; Akitake, Hiroto; Tahara, Makoto

    2014-09-20

    In many crops species, the development of a rapid and precise cultivar discrimination system has been required for plant breeding and patent protection of plant cultivars and agricultural products. Here, we successfully evaluated strawberry cultivars via a novel method, namely, the single tag hybridization (STH) chromatographic printed array strip (PAS) using the PCR products of eight genomic regions. In a previous study, we showed that genotyping of eight genomic regions derived from FaRE1 retrotransposon insertion site enabled to discriminate 32 strawberry cultivars precisely, however, this method required agarose/acrylamide gel electrophoresis, thus has the difficulty for practical application. In contrast, novel DNA detection method in this study has some great advantages over standard DNA detection methods, including agarose/acrylamide gel electrophoresis, because it produces signals for DNA detection with dramatically higher sensitivity in a shorter time without any preparation or staining of a gel. Moreover, this method enables the visualization of multiplex signals simultaneously in a single reaction using several independent amplification products. We expect that this novel method will become a rapid and convenient cultivar screening assay for practical purposes, and will be widely applied to various situations, including laboratory research, and on-site inspection of plant cultivars and agricultural products. PMID:24954682

  19. A Microfluidic Channel Method for Rapid Drug-Susceptibility Testing of Pseudomonas aeruginosa

    PubMed Central

    Matsumoto, Yoshimi; Grushnikov, Andrey; Kikuchi, Kazuma; Noji, Hiroyuki; Yamaguchi, Akihito; Yagi, Yasushi

    2016-01-01

    The recent global increase in the prevalence of antibiotic-resistant bacteria and lack of development of new therapeutic agents emphasize the importance of selecting appropriate antimicrobials for the treatment of infections. However, to date, the development of completely accelerated drug susceptibility testing methods has not been achieved despite the availability of a rapid identification method. We proposed an innovative rapid method for drug susceptibility testing for Pseudomonas aeruginosa that provides results within 3 h. The drug susceptibility testing microfluidic (DSTM) device was prepared using soft lithography. It consisted of five sets of four microfluidic channels sharing one inlet slot, and the four channels are gathered in a small area, permitting simultaneous microscopic observation. Antimicrobials were pre-introduced into each channel and dried before use. Bacterial suspensions in cation-adjusted Mueller–Hinton broth were introduced from the inlet slot and incubated for 3 h. Susceptibilities were microscopically evaluated on the basis of differences in cell numbers and shapes between drug-treated and control cells, using dedicated software. The results of 101 clinically isolated strains of P. aeruginosa obtained using the DSTM method strongly correlated with results obtained using the ordinary microbroth dilution method. Ciprofloxacin, meropenem, ceftazidime, and piperacillin caused elongation in susceptible cells, while meropenem also induced spheroplast and bulge formation. Morphological observation could alternatively be used to determine the susceptibility of P. aeruginosa to these drugs, although amikacin had little effect on cell shape. The rapid determination of bacterial drug susceptibility using the DSTM method could also be applicable to other pathogenic species, and it could easily be introduced into clinical laboratories without the need for expensive instrumentation. PMID:26872134

  20. A rapid chemical odour profiling method for the identification of rhinoceros horns.

    PubMed

    Ueland, Maiken; Ewart, Kyle; Troobnikoff, Amanda N; Frankham, Greta; Johnson, Rebecca N; Forbes, Shari L

    2016-09-01

    Illegal poaching causes great harm to species diversity and conservation. A vast amount of money is involved in the trade of illegal or forged animal parts worldwide. In many cases, the suspected animal part is unidentifiable and requires costly and invasive laboratory analysis such as isotopic fingerprinting or DNA testing. The lack of rapid and accurate methods to identify wildlife parts at the point of detection represents a major hindrance in the enforcement and prosecution of wildlife trafficking. The ability of wildlife detector dogs to alert to different wildlife species demonstrates that there is a detectable difference in scent profile of illegally traded animal parts. This difference was exploited to develop a rapid, non-invasive screening method for distinguishing rhinoceros horns of different species. The method involved the collection of volatile organic compounds (VOC) by headspace solid-phase microextraction (HS-SPME) and analysis by comprehensive two-dimensional gas chromatography - time-of-flight mass spectrometry (GC×GC-TOFMS). It was hypothesised that the use of the specific odour profile as a screening method could separate and differentiate geographic origin or exploit the difference in diets of different species within a family (such as white rhinoceros and black rhinoceros from the Rhinocerotidae family). Known black and white rhinoceros horn samples were analysed using HS-SPME-GC×GC-TOFMS and multivariate statistics were applied to identify groupings in the data set. The black rhinoceros horn samples were distinctly different from the white rhinoceros horn samples. This demonstrated that seized rhinoceros horn samples can be identified based on their distinct odour profiles. The chemical odour profiling method has great potential as a rapid and non-invasive screening method in order to combat and track illegal trafficking of wildlife parts.

  1. A rapid chemical odour profiling method for the identification of rhinoceros horns.

    PubMed

    Ueland, Maiken; Ewart, Kyle; Troobnikoff, Amanda N; Frankham, Greta; Johnson, Rebecca N; Forbes, Shari L

    2016-09-01

    Illegal poaching causes great harm to species diversity and conservation. A vast amount of money is involved in the trade of illegal or forged animal parts worldwide. In many cases, the suspected animal part is unidentifiable and requires costly and invasive laboratory analysis such as isotopic fingerprinting or DNA testing. The lack of rapid and accurate methods to identify wildlife parts at the point of detection represents a major hindrance in the enforcement and prosecution of wildlife trafficking. The ability of wildlife detector dogs to alert to different wildlife species demonstrates that there is a detectable difference in scent profile of illegally traded animal parts. This difference was exploited to develop a rapid, non-invasive screening method for distinguishing rhinoceros horns of different species. The method involved the collection of volatile organic compounds (VOC) by headspace solid-phase microextraction (HS-SPME) and analysis by comprehensive two-dimensional gas chromatography - time-of-flight mass spectrometry (GC×GC-TOFMS). It was hypothesised that the use of the specific odour profile as a screening method could separate and differentiate geographic origin or exploit the difference in diets of different species within a family (such as white rhinoceros and black rhinoceros from the Rhinocerotidae family). Known black and white rhinoceros horn samples were analysed using HS-SPME-GC×GC-TOFMS and multivariate statistics were applied to identify groupings in the data set. The black rhinoceros horn samples were distinctly different from the white rhinoceros horn samples. This demonstrated that seized rhinoceros horn samples can be identified based on their distinct odour profiles. The chemical odour profiling method has great potential as a rapid and non-invasive screening method in order to combat and track illegal trafficking of wildlife parts. PMID:27240958

  2. Absolute radiometric calibration of the CCRS SAR

    NASA Astrophysics Data System (ADS)

    Ulander, Lars M. H.; Hawkins, Robert K.; Livingstone, Charles E.; Lukowski, Tom I.

    1991-11-01

    Determining the radar scattering coefficients from SAR (synthetic aperture radar) image data requires absolute radiometric calibration of the SAR system. The authors describe an internal calibration methodology for the airborne Canada Centre for Remote Sensing (CCRS) SAR system, based on radar theory, a detailed model of the radar system, and measurements of system parameters. The methodology is verified by analyzing external calibration data acquired over a 6-month period in 1988 by the C-band radar using HH polarization. The results indicate that the overall error is +/- 0.8 dB (1-sigma) for incidence angles +/- 20 deg from antenna boresight. The dominant error contributions are due to the antenna radome and uncertainties in the elevation angle relative to the antenna boresight.

  3. The Joint African Radiometric Propagation Measurement Programme

    NASA Astrophysics Data System (ADS)

    Arbesser-Rastburg, B.; Zaks, C.; Rogers, D. V.; McCarthy, D. K.; Allnutt, J. E.

    1990-06-01

    This paper summarizes the principal aspects of a major cooperative radiowave propagation experiment that was designed to collect data for improving rain attenuation prediction models for tropical Africa. A pressing need for such data had previously been identified by Resolution 79 of the CCIR. In a unique joint arrangement with three African governments, Intelsat, Comsat, the U.S. Agency for International Development, the U.S. National Telecommunications and Information Administration and the U.S. Telecommunications Training Institute (USTTI) collaborated in setting up a Ku-band radiometric measurement campaign in Cameroon, Kenya and Nigeria. A brief historical overview is given, together with the major technical parameters of the sites and the equipment installed there. The anticipated characteristics of the three locations are outlined with regard to meteorological and propagation conditions, and some preliminary indications of the results are presented based on an inspection of the early event data.

  4. GIFTS SM EDU Radiometric and Spectral Calibrations

    NASA Technical Reports Server (NTRS)

    Tian, J.; Reisse, R. a.; Johnson, D. G.; Gazarik, J. J.

    2007-01-01

    The Geosynchronous Imaging Fourier Transform Spectrometer (GIFTS) Sensor Module (SM) Engineering Demonstration Unit (EDU) is a high resolution spectral imager designed to measure infrared (IR) radiance using a Fourier transform spectrometer (FTS). The GIFTS instrument gathers measurements across the long-wave IR (LWIR), short/mid-wave IR (SMWIR), and visible spectral bands. The raw interferogram measurements are radiometrically and spectrally calibrated to produce radiance spectra, which are further processed to obtain atmospheric profiles via retrieval algorithms. This paper describes the processing algorithms involved in the calibration. The calibration procedures can be subdivided into three categories: the pre-calibration stage, the calibration stage, and finally, the post-calibration stage. Detailed derivations for each stage are presented in this paper.

  5. Absolute radiometric calibration of the Thematic Mapper

    NASA Technical Reports Server (NTRS)

    Slater, P. N.; Biggar, S. F.; Holm, R. G.; Jackson, R. D.; Mao, Y.

    1986-01-01

    Calibration data for the solar reflective bands of the Landsat-5 TM obtained from five in-flight absolute radiometric calibrations from July 1984-November 1985 at White Sands, New Mexico are presented and analyzed. Ground reflectance and atmospheric data were utilized to predict the spectral radiance at the entrance pupil of the TM and the average number of digital counts in each TM band. The calibration of each of the TM solar reflective bands was calculated in terms of average digital counts/unit spectral radiance for each band. It is observed that for the 12 reflectance-based measurements the rms variation from the means as a percentage of the mean is + or - 1.9 percent; for the 11 measurements in the IR bands, it is + or - 3.4 percent; and the rms variation for all 23 measurements is + or - 2.8 percent.

  6. Overview of the radiometric calibration of MOBY

    NASA Astrophysics Data System (ADS)

    Clark, Dennis K.; Feinholz, Michael; Yarbrough, Mark; Johnson, B. Carol; Brown, Steven W.; Kim, Yong S.; Barnes, Robert A.

    2002-01-01

    a negative difference for the post- deployment values. This trend is to be expected after a deployment of 3 months. To date, only the pre-deployment calibration measurements have been used to adjust the system responses for the MOBY time series. Based on these results, the estimated radiometric uncertainty for MOBY in-water ocean color measurements is estimated to be about 4% to 8% (kequals1). As part of a collaboration with NIST, annual radiometric comparisons are made at the MOBY calibration facility. NIST personnel use transfer radiometers and integrating spheres to validate (verify) the accuracy of the MOBY calibration sources. Recently, we began a study of the stray light contribution to the radiometric uncertainty in the MOBY systems. A complete reprocessing of the MOBY data set, including the changes within each MOBY deployment, will commence upon the completion of the stray light characterization, which is scheduled for the fall of 2001. It is anticipated that this reprocessing will reduce the overall radiometric uncertainty to less than 5% (kequals1).

  7. Multifrequency excitation method for rapid and accurate dynamic test of micromachined gyroscope chips.

    PubMed

    Deng, Yan; Zhou, Bin; Xing, Chao; Zhang, Rong

    2014-10-17

    A novel multifrequency excitation (MFE) method is proposed to realize rapid and accurate dynamic testing of micromachined gyroscope chips. Compared with the traditional sweep-frequency excitation (SFE) method, the computational time for testing one chip under four modes at a 1-Hz frequency resolution and 600-Hz bandwidth was dramatically reduced from 10 min to 6 s. A multifrequency signal with an equal amplitude and initial linear-phase-difference distribution was generated to ensure test repeatability and accuracy. The current test system based on LabVIEW using the SFE method was modified to use the MFE method without any hardware changes. The experimental results verified that the MFE method can be an ideal solution for large-scale dynamic testing of gyroscope chips and gyroscopes.

  8. A method of rapidly estimating the position of the laminar separation point

    NASA Technical Reports Server (NTRS)

    Von Doenhoff, Albert E

    1938-01-01

    A method is described of rapidly estimating the position of the laminar separation point from the given pressure distribution along a body; the method is applicable to a fairly wide variety of cases. The laminar separation point is found by the von Karman-Millikan method for a series of velocity distributions along a flat plate, which consist of a region of uniform velocity followed by a region of uniform decreased velocity. It is shown that such a velocity distribution can frequently replace the actual velocity distribution along a body insofar as the effects on laminar separation are concerned. An example of the application of the method is given by using it to calculate the position of the laminar separation point on the NACA 0012 airfoil section at zero lift. The agreement between the position of the separation point calculated according to the present method and that found from more elaborate computations is very good.

  9. Multifrequency Excitation Method for Rapid and Accurate Dynamic Test of Micromachined Gyroscope Chips

    PubMed Central

    Deng, Yan; Zhou, Bin; Xing, Chao; Zhang, Rong

    2014-01-01

    A novel multifrequency excitation (MFE) method is proposed to realize rapid and accurate dynamic testing of micromachined gyroscope chips. Compared with the traditional sweep-frequency excitation (SFE) method, the computational time for testing one chip under four modes at a 1-Hz frequency resolution and 600-Hz bandwidth was dramatically reduced from 10 min to 6 s. A multifrequency signal with an equal amplitude and initial linear-phase-difference distribution was generated to ensure test repeatability and accuracy. The current test system based on LabVIEW using the SFE method was modified to use the MFE method without any hardware changes. The experimental results verified that the MFE method can be an ideal solution for large-scale dynamic testing of gyroscope chips and gyroscopes. PMID:25330052

  10. Comparison of concentration methods for rapid detection of hookworm ova in wastewater matrices using quantitative PCR.

    PubMed

    Gyawali, P; Ahmed, W; Jagals, P; Sidhu, J P S; Toze, S

    2015-12-01

    Hookworm infection contributes around 700 million infections worldwide especially in developing nations due to increased use of wastewater for crop production. The effective recovery of hookworm ova from wastewater matrices is difficult due to their low concentrations and heterogeneous distribution. In this study, we compared the recovery rates of (i) four rapid hookworm ova concentration methods from municipal wastewater, and (ii) two concentration methods from sludge samples. Ancylostoma caninum ova were used as surrogate for human hookworm (Ancylostoma duodenale and Necator americanus). Known concentration of A. caninum hookworm ova were seeded into wastewater (treated and raw) and sludge samples collected from two wastewater treatment plants (WWTPs) in Brisbane and Perth, Australia. The A. caninum ova were concentrated from treated and raw wastewater samples using centrifugation (Method A), hollow fiber ultrafiltration (HFUF) (Method B), filtration (Method C) and flotation (Method D) methods. For sludge samples, flotation (Method E) and direct DNA extraction (Method F) methods were used. Among the four methods tested, filtration (Method C) method was able to recover higher concentrations of A. caninum ova consistently from treated wastewater (39-50%) and raw wastewater (7.1-12%) samples collected from both WWTPs. The remaining methods (Methods A, B and D) yielded variable recovery rate ranging from 0.2 to 40% for treated and raw wastewater samples. The recovery rates for sludge samples were poor (0.02-4.7), although, Method F (direct DNA extraction) provided 1-2 orders of magnitude higher recovery rate than Method E (flotation). Based on our results it can be concluded that the recovery rates of hookworm ova from wastewater matrices, especially sludge samples, can be poor and highly variable. Therefore, choice of concentration method is vital for the sensitive detection of hookworm ova in wastewater matrices.

  11. Rapid method for protein quantitation by Bradford assay after elimination of the interference of polysorbate 80.

    PubMed

    Cheng, Yongfeng; Wei, Haiming; Sun, Rui; Tian, Zhigang; Zheng, Xiaodong

    2016-02-01

    Bradford assay is one of the most common methods for measuring protein concentrations. However, some pharmaceutical excipients, such as detergents, interfere with Bradford assay even at low concentrations. Protein precipitation can be used to overcome sample incompatibility with protein quantitation. But the rate of protein recovery caused by acetone precipitation is only about 70%. In this study, we found that sucrose not only could increase the rate of protein recovery after 1 h acetone precipitation, but also did not interfere with Bradford assay. So we developed a method for rapid protein quantitation in protein drugs even if they contained interfering substances.

  12. A rapid method for comparing monoclonal antibodies by limited proteolysis and electrophoresis.

    PubMed

    Weissman, D; Rothstein, T L; Marshak-Rothstein, A

    1985-01-01

    A rapid and sensitive method for comparing the primary structure of proteins has been adapted to the study of monoclonal antibodies. Samples were digested with alpha-chymotrypsin in the presence of sodium dodecyl sulfate after which peptide fragments were separated into distinctive banding patterns by polyacrylamide gel electrophoresis. This method could easily detect differences in the primary structure of antibodies with related as well as unrelated binding specificities. In addition, antibody molecules derived by somatic diversification from the same germ line gene segments could be distinguished from one another.

  13. A rapid method for the computation of equilibrium chemical composition of air to 15000 K

    NASA Technical Reports Server (NTRS)

    Prabhu, Ramadas K.; Erickson, Wayne D.

    1988-01-01

    A rapid computational method has been developed to determine the chemical composition of equilibrium air to 15000 K. Eleven chemically reacting species, i.e., O2, N2, O, NO, N, NO+, e-, N+, O+, Ar, and Ar+ are included. The method involves combining algebraically seven nonlinear equilibrium equations and four linear elemental mass balance and charge neutrality equations. Computational speeds for determining the equilibrium chemical composition are significantly faster than the often used free energy minimization procedure. Data are also included from which the thermodynamic properties of air can be computed. A listing of the computer program together with a set of sample results are included.

  14. Polymerase Chain Reaction/Rapid Methods Are Gaining a Foothold in Developing Countries.

    PubMed

    Ragheb, Suzan Mohammed; Jimenez, Luis

    Detection of microbial contamination in pharmaceutical raw materials and finished products is a critical factor to guarantee their safety, stability, and potency. Rapid microbiological methods-such as polymerase chain reaction-have been widely applied to clinical and food quality control analysis. However, polymerase chain reaction applications to pharmaceutical quality control have been rather slow and sporadic. Successful implementation of these methods in pharmaceutical companies in developing countries requires important considerations to provide sensitive and robust assays that will comply with good manufacturing practices. PMID:25188346

  15. Absolute Radiometric Calibration of EUNIS-06

    NASA Technical Reports Server (NTRS)

    Thomas, R. J.; Rabin, D. M.; Kent, B. J.; Paustian, W.

    2007-01-01

    The Extreme-Ultraviolet Normal-Incidence Spectrometer (EUNIS) is a soundingrocket payload that obtains imaged high-resolution spectra of individual solar features, providing information about the Sun's corona and upper transition region. Shortly after its successful initial flight last year, a complete end-to-end calibration was carried out to determine the instrument's absolute radiometric response over its Longwave bandpass of 300 - 370A. The measurements were done at the Rutherford-Appleton Laboratory (RAL) in England, using the same vacuum facility and EUV radiation source used in the pre-flight calibrations of both SOHO/CDS and Hinode/EIS, as well as in three post-flight calibrations of our SERTS sounding rocket payload, the precursor to EUNIS. The unique radiation source provided by the Physikalisch-Technische Bundesanstalt (PTB) had been calibrated to an absolute accuracy of 7% (l-sigma) at 12 wavelengths covering our bandpass directly against the Berlin electron storage ring BESSY, which is itself a primary radiometric source standard. Scans of the EUNIS aperture were made to determine the instrument's absolute spectral sensitivity to +- 25%, considering all sources of error, and demonstrate that EUNIS-06 was the most sensitive solar E W spectrometer yet flown. The results will be matched against prior calibrations which relied on combining measurements of individual optical components, and on comparisons with theoretically predicted 'insensitive' line ratios. Coordinated observations were made during the EUNIS-06 flight by SOHO/CDS and EIT that will allow re-calibrations of those instruments as well. In addition, future EUNIS flights will provide similar calibration updates for TRACE, Hinode/EIS, and STEREO/SECCHI/EUVI.

  16. FPGA-based data processing module design of on-board radiometric calibration in visible/near infrared bands

    NASA Astrophysics Data System (ADS)

    Zhou, Guoqing; Li, Chenyang; Yue, Tao; Liu, Na; Jiang, Linjun; Sun, Yue; Li, Mingyan

    2015-12-01

    FPGA technology has long been applied to on-board radiometric calibration data processing however the integration of FPGA program is not good enough. For example, some sensors compressed remote sensing images and transferred to ground station to calculate the calibration coefficients. It will affect the timeliness of on-board radiometric calibration. This paper designs an integrated flow chart of on-board radiometric calibration. Building FPGA-based radiometric calibration data processing modules uses system generator. Thesis focuses on analyzing the calculation accuracy of FPGA-based two-point method and verifies the feasibility of this method. Calibration data was acquired by hardware platform which was built using integrating sphere, CMOS camera (canon 60d), ASD spectrometers and light filter (center wavelength: 690nm, bandwidth: 45nm). The platform can simulate single-band on-board radiometric calibration data acquisition in visible/near infrared band. Making an experiment of calibration coefficients calculation uses obtained data and FPGA modules. Experimental results show that: the camera linearity is above 99% meeting the experimental requirement. Compares with MATLAB the calculation accuracy of two-point method by FPGA are as follows: the error of gain value is 0.0053%; the error of offset value is 0.00038719%. Those results meet experimental accuracy requirement.

  17. A new, sensitive, and rapid spectrophotometric method for the determination of sulfa drugs.

    PubMed

    Nagaraja, Padmarajaiah; Yathirajan, Hemmige S; Sunitha, Kallanchira R; Vasantha, Ramanathapura A

    2002-01-01

    A sensitive, rapid, and simple spectrophotometric method is described for the determination of sulfa drugs. The method is based on the formation of a red-colored product by the diazotization of sulfonamides such as sulfathiazole (SFT), sulfadiazine (SFD), sulfacetamide (SFA), sulfamethoxazole (SFMx), sulfamerazine (SFMr), sulfaguanidine (SFG), and sulfamethazine (SFMt), followed by complexation with dopamine in the presence of molybdate ions in (1 + 1) H2SO4 medium. Absorbance of the resulting red product is measured at 490-510 nm, and the product is stable for 2 days at 27 degrees C. Beer's law is obeyed in the concentration range of 0.04-8.0 microg/mL at the wavelength of maximum absorption. The method was used successfully for the determination of some sulfonamides in tablets and eye drops. Common excipients used as additives in pharmaceuticals do not interfere in the proposed method. The method offers the advantages of simplicity, rapidity, and sensitivity without the need for extraction or heating. The limits of detection and quantitation were calculated for SFT, SFD, SFA, SFMx, SFMr, SFG, and SFMt.

  18. Method for rapid detection of viable Escherichia coli in water using real-time NASBA.

    PubMed

    Heijnen, Leo; Medema, Gertjan

    2009-07-01

    A rapid real-time NASBA method was developed for detection of Escherichia coli in water samples. In this method, a fragment of the clpB-mRNA is amplified and a specific molecular beacon probe is used to detect the amplified mRNA fragment during the NASBA reaction. The method was shown to be specific and sensitive (1 viable E. coli in 100ml) and can be performed within 3-4h. Different inactivation processes (starvation, heat, UV-irradiation and chlorine) were employed to study the relationship between culturability and the ability to detect E. coli using NASBA. Detection of clpB-mRNA correlated with culturability after starvation or chlorine treatment. After UV-irradiation or heat-inactivation, detection of the increase in production of clpB-mRNA in viable E. coli cells after heat-shock induction correlated with culturability. Application of the NASBA method on tap water, treated sewage and surface water samples showed that culture and NASBA yielded comparable results in these different matrices. This study demonstrates that the NASBA method has high potential as a rapid test for microbiological water quality monitoring.

  19. [Research on the method for rapid detection of soil moisture content using spectral data].

    PubMed

    Song, Tao; Bao, Yi-Dan; He, Yong

    2009-03-01

    Spectroscopy technique is one of the qualitative and quantitative analytical techniques developed quickly in recent years. The spectral analysis is a fast and non-destructive method and has been used in many fields such as oil industry, food industry and so on. In the present paper, the spectral band sensitive to soil moisture content was found from the visible/near infrared spectra and a monadic linear regression model based on the data of sensitive spectral band was applied to develop a method for rapid detection of soil moisture content. The spectral data of 52 soil samples were collected by using FieldSpec HandHeld spectroradiometer made by ASD (Analytical Spectral Device) company in the US, and the data of soil moisture content were obtained by experiment. The spectral band sensitive to soil moisture content was achieved by correlation coefficient method. Then, the data of sensitive spectral band were used to build monadic linear regression model of soil moisture content. Finally, the model was employed for the prediction of soil moisture content. Correlation coefficient (r) of prediction and root mean square error of prediction (RMSEP) were used as the evaluation standards. The results indicated that the r and RMSEP for the prediction of soil moisture content were 0.966 5 and 0.012 1 respectively. Thus, it is concluded that the method used in this paper is an available method for the rapid detection of soil moisture content based on the visible/near-infrared spectra.

  20. A Rapid and Economical Method for Efficient DNA Extraction from Diverse Soils Suitable for Metagenomic Applications

    PubMed Central

    Devi, Selvaraju Gayathri; Fathima, Anwar Aliya; Radha, Sudhakar; Arunraj, Rex; Curtis, Wayne R.; Ramya, Mohandass

    2015-01-01

    A rapid, cost effective method of metagenomic DNA extraction from soil is a useful tool for environmental microbiology. The present work describes an improved method of DNA extraction namely “powdered glass method” from diverse soils. The method involves the use of sterile glass powder for cell lysis followed by addition of 1% powdered activated charcoal (PAC) as purifying agent to remove humic substances. The method yielded substantial DNA (5.87 ± 0.04 μg/g of soil) with high purity (A260/280: 1.76 ± 0.05) and reduced humic substances (A340: 0.047 ± 0.03). The quality of the extracted DNA was compared against five different methods based on 16S rDNA PCR amplification, BamHI digestion and validated using quantitative PCR. The digested DNA was used for a metagenomic library construction with the transformation efficiency of 4 X 106 CFU mL-1. Besides providing rapid, efficient and economical extraction of metgenomic DNA from diverse soils, this method’s applicability is also demonstrated for cultivated organisms (Gram positive B. subtilis NRRL-B-201, Gram negative E. coli MTCC40, and a microalgae C. sorokiniana UTEX#1666). PMID:26167854

  1. Rapid methods to detect organic mercury and total selenium in biological samples

    PubMed Central

    2011-01-01

    Background Organic mercury (Hg) is a global pollutant of concern and selenium is believed to afford protection against mercury risk though few approaches exist to rapidly assess both chemicals in biological samples. Here, micro-scale and rapid methods to detect organic mercury (< 1.5 ml total sample volume, < 1.5 hour) and total selenium (Se; < 3.0 ml total volume, < 3 hour) from a range of biological samples (10-50 mg) are described. Results For organic Hg, samples are digested using Tris-HCl buffer (with sequential additions of protease, NaOH, cysteine, CuSO4, acidic NaBr) followed by extraction with toluene and Na2S2O3. The final product is analyzed via commercially available direct/total mercury analyzers. For Se, a fluorometric assay has been developed for microplate readers that involves digestion (HNO3-HClO4 and HCl), conjugation (2,3-diaminonaphthalene), and cyclohexane extraction. Recovery of organic Hg (86-107%) and Se (85-121%) were determined through use of Standard Reference Materials and lemon shark kidney tissues. Conclusions The approaches outlined provide an easy, rapid, reproducible, and cost-effective platform for monitoring organic Hg and total Se in biological samples. Owing to the importance of organic Hg and Se in the pathophysiology of Hg, integration of such methods into established research monitoring efforts (that largely focus on screening total Hg only) will help increase understanding of Hg's true risks. PMID:21232132

  2. Analysis Of Volatile Fingerprints: A Rapid Screening Method For Antifungal Agents For Efficacy Against Dermatophytes

    NASA Astrophysics Data System (ADS)

    Naraghi, Kamran; Sahgal, Natasha; Adriaans, Beverley; Barr, Hugh; Magan, Naresh

    2009-05-01

    The potential of using an electronic nose (E. nose) for rapid screening dermatophytes to antifungal agents was studied. In vitro, the 50 and 90% effective concentration (EC) values of five antifungal agents for T. rubrum and T. mentagrophytes were obtained by mycelial growth assays. Then, the qualitative volatile production patterns of the growth responses of these fungi to these values were incorporated into solid medium were analysed after 96-120 hrs incubation at 25° C using headspace analyses. Overall, results, using PCA and CA demonstrated that it is possible to differentiate between various treatments within 96-120 hrs. This study showed that potential exists for using qualitative volatile patterns as a rapid screening method for antifungal agents for microorganism. This approach could also facilitate the monitoring of antimicrobial drug activities and infection control programmes and perhaps drug resistance build up in microbial species.

  3. Application of rapid cloud point extraction method for trace cobalt analysis coupled with spectrophotometric determination.

    PubMed

    Wen, Xiaodong; He, Lei; Shi, Chunsheng; Deng, Qingwen; Wang, Jiwei; Zhao, Xia

    2013-11-01

    In this work, the analytical performance of conventional spectrophotometer was improved through the coupling of effective preconcentration method with spectrophotometric determination. Rapidly synergistic cloud point extraction (RS-CPE) was used to pre-concentrate ultra trace cobalt and firstly coupled with spectrophotometric determination. The developed coupling was simple, rapid and efficient. The factors influencing RS-CPE and spectrophotometer were optimized. Under the optimal conditions, the limit of detection (LOD) was 0.6μgL(-1), with sensitivity enhancement factor of 23. The relative standard deviation (RSD) for seven replicate measurements of 50μgL(-1) of cobalt was 4.3%. The recoveries for the spiked samples were in the acceptable range of 93.8-105%.

  4. Application of rapid cloud point extraction method for trace cobalt analysis coupled with spectrophotometric determination

    NASA Astrophysics Data System (ADS)

    Wen, Xiaodong; He, Lei; Shi, Chunsheng; Deng, Qingwen; Wang, Jiwei; Zhao, Xia

    2013-11-01

    In this work, the analytical performance of conventional spectrophotometer was improved through the coupling of effective preconcentration method with spectrophotometric determination. Rapidly synergistic cloud point extraction (RS-CPE) was used to pre-concentrate ultra trace cobalt and firstly coupled with spectrophotometric determination. The developed coupling was simple, rapid and efficient. The factors influencing RS-CPE and spectrophotometer were optimized. Under the optimal conditions, the limit of detection (LOD) was 0.6 μg L-1, with sensitivity enhancement factor of 23. The relative standard deviation (RSD) for seven replicate measurements of 50 μg L-1 of cobalt was 4.3%. The recoveries for the spiked samples were in the acceptable range of 93.8-105%.

  5. Wet SEM: a novel method for rapid diagnosis of brain tumors.

    PubMed

    Barshack, Iris; Polak-Charcon, Sylvia; Behar, Vered; Vainshtein, Anya; Zik, Ory; Ofek, Efrat; Hadani, Moshe; Kopolovic, Juri; Nass, Dvora

    2004-01-01

    The authors present the application of wet SEM for histopathological assessment, a technology for imaging fully hydrated samples at atmospheric pressure in a scanning electron microscope (SEM). Both transmission and scanning electron microscopy techniques usually require long and complex sample preparation of the tissues. In marked contrast, a rapid preparation of tissues is described for evaluation by SEM imaging. The wet SEM technology successfully demonstrated both histological and ultrastructural features of several CNS tumors: Rosette formation and intracytoplasmic lumens were observed in ependymoma; numerous fibrillary processes in fibrillary astrocytoma; and focal rosette formation with no intracytoplasmic lumens in medulloblastoma. Application of this method simultaneously with frozen section may improve rapid intraoperative diagnosis of these intracranial tumors.

  6. A rapid method for counting nucleated erythrocytes on stained blood smears by digital image analysis

    USGS Publications Warehouse

    Gering, E.; Atkinson, C.T.

    2004-01-01

    Measures of parasitemia by intraerythrocytic hematozoan parasites are normally expressed as the number of infected erythrocytes per n erythrocytes and are notoriously tedious and time consuming to measure. We describe a protocol for generating rapid counts of nucleated erythrocytes from digital micrographs of thin blood smears that can be used to estimate intensity of hematozoan infections in nonmammalian vertebrate hosts. This method takes advantage of the bold contrast and relatively uniform size and morphology of erythrocyte nuclei on Giemsa-stained blood smears and uses ImageJ, a java-based image analysis program developed at the U.S. National Institutes of Health and available on the internet, to recognize and count these nuclei. This technique makes feasible rapid and accurate counts of total erythrocytes in large numbers of microscope fields, which can be used in the calculation of peripheral parasitemias in low-intensity infections.

  7. Development of a rapid and simple method for detection of protein contaminants in carmine.

    PubMed

    Nakayama, Norihisa; Ohtsu, Yutaka; Maezawa-Kase, Daisuke; Sano, Ken-Ichi

    2015-01-01

    Protein contaminants in carmine can cause dyspnea and anaphylactic reactions in users and consumers of products containing this pigment. The method generally used for detection of proteins in carmine has low reproducibility and is time-consuming. In this study, a rapid, simple, and highly reproducible method was developed for the detection of protein contaminants in carmine. This method incorporates acidic protein denaturation conditions and ultrafiltration. To prevent protein aggregation, sodium dodecyl sulfate containing gel electrophoresis running buffer was used for dispersing the carmine before filtration. An ultrafiltration device was used to separate the protein contaminants from carminic acid in the carmine solution. Two ultrafiltration devices were compared, and a cylindrical device containing a modified polyethersulfone membrane gave the best results. The method had high reproducibility. PMID:25892994

  8. Rapid microplate, green method for high-throughput evaluation of vinegar acidity using thermal infrared enthalpimetry.

    PubMed

    Tischer, Bruna; Oliveira, Alessandra Stangherlin; Ferreira, Daniele de Freitas; Menezes, Cristiano Ragagnin; Duarte, Fábio Andrei; Wagner, Roger; Barin, Juliano Smanioto

    2017-01-15

    Infrared thermal imaging was combined with disposable microplates to perform enthalpimetric analysis using an infrared camera to monitor temperature without contact. The proposed thermal infrared enthalpimetry (TIE) method was used to determine the total, fixed and volatile acidities of vinegars. Sample preparation and analysis were performed in the same vessel, avoiding excessive sample handling and reducing energy expenditure by more than ten times. The results agreed with those of the conventional method for different kinds of vinegars, with values of 1.7%, and 2.3% for repeatability and intermediate precision, respectively. A linear calibration curve was obtained from 0.040 to 1.30molL(-1). The proposed method provided rapid results (within 10s) for four samples simultaneously, a sample throughput of up to 480 samples per hour. In addition, the method complies with at least eight of twelve recommendations for green analytical chemistry, making TIE a promising tool for routine vinegar analysis.

  9. Rapid quantitative method for total brominated vegetable oil in soft drinks using ion chromatography.

    PubMed

    Yousef, Ashraf A; Abbas, Alaa B; Badawi, Bassam Sh; Al-Jowhar, Wafaa Y; Zain, Esam A; El-Mufti, Seham A

    2012-08-01

    A simple, quantitative and rapid method for total brominated vegetable oil (BVO) using ion chromatography (IC) with suppressed conductivity detection was developed and successfully applied to soft drinks with results expressed as inorganic bromide anion. The procedure involves extraction of BVO with diethyl ether and treatment with zinc dust in a solution of acetic acid, giving recoveries ranging between 92.5 and 98.5%. The calibration curves obtained were linear with correlation coefficients (r²) of 0.998, a coefficient of variation (CV) of less than 5% and limit of detection (LOD) and limit of quantification (LOQ) of 250 and 750 µg l⁻¹, respectively. The method was successfully applied to the determination of BVO in several commercial soft drinks which were found to contain BVO in the range 1.8-14.510 mg l⁻¹. The method has less sources of error compared to previously published methods.

  10. Rapid microplate, green method for high-throughput evaluation of vinegar acidity using thermal infrared enthalpimetry.

    PubMed

    Tischer, Bruna; Oliveira, Alessandra Stangherlin; Ferreira, Daniele de Freitas; Menezes, Cristiano Ragagnin; Duarte, Fábio Andrei; Wagner, Roger; Barin, Juliano Smanioto

    2017-01-15

    Infrared thermal imaging was combined with disposable microplates to perform enthalpimetric analysis using an infrared camera to monitor temperature without contact. The proposed thermal infrared enthalpimetry (TIE) method was used to determine the total, fixed and volatile acidities of vinegars. Sample preparation and analysis were performed in the same vessel, avoiding excessive sample handling and reducing energy expenditure by more than ten times. The results agreed with those of the conventional method for different kinds of vinegars, with values of 1.7%, and 2.3% for repeatability and intermediate precision, respectively. A linear calibration curve was obtained from 0.040 to 1.30molL(-1). The proposed method provided rapid results (within 10s) for four samples simultaneously, a sample throughput of up to 480 samples per hour. In addition, the method complies with at least eight of twelve recommendations for green analytical chemistry, making TIE a promising tool for routine vinegar analysis. PMID:27542445

  11. Principles, applications, and limitations of automated ribotyping as a rapid method in food safety.

    PubMed

    Pavlic, Marin; Griffiths, Mansel W

    2009-11-01

    Automated ribotyping (AR) is a genotyping method used for identification and characterization of foodborne pathogens to the strain level. The advantages of AR are full automation, rapidity, and high reproducibility and typeability. AR may be a suitable characterization method for some pathogens when the research purpose requires a genotyping method with a strong discriminatory power. AR is a sensitive subtyping method for pathogens such as Listeria monocytogenes and Salmonellae, while its discriminatory power may often not be sufficient for Campylobacter spp. and especially Escherichia coli. This review discusses the principles of manual and AR and provides examples of typical AR use in the subtyping of several major foodborne pathogens and a brief discussion of several other less prominent pathogens.

  12. [Three-Iindex-Value Method for Rapid Screening Unqualified Vegetable Oil].

    PubMed

    He, Wen-xuan; Hong, Gui-shui; Fang, Run; Cai, Xian-chun; Huang, Sheng

    2015-04-01

    In the present study, by measuring the A3 005 (representing unsaturation), A985 (representing conjugated fatty acids), A960 + A985 (representing trans-fatty acid ) of southern common vegetable oils (peanut oil, corn oil, canola oil, soybean oil, sunflower oil, tea seed oil and olive oil), "waste oil" and overdue vegetable oils, the pass-setting-range of these three index values for the vegetable oils was obtained. On this basis, a method for rapid screening unqualified vegetable oil (expired, adding low-cost oil, adding "waste oil") was established. The method effectively improved the monitoring efficiency of vegetable oil. With this method of screening a number of suspected substandard oils were proved unqualified by determination of fatty acid composition and 11, 12, 13, 17 fatty acid content. Through the combination of several detection methods, the causes for disqualification of vegetable oils can be further inferred. PMID:26197591

  13. Development of a Rapid and Simple Method for Detection of Protein Contaminants in Carmine

    PubMed Central

    Nakayama, Norihisa; Ohtsu, Yutaka; Maezawa-Kase, Daisuke; Sano, Ken-Ichi

    2015-01-01

    Protein contaminants in carmine can cause dyspnea and anaphylactic reactions in users and consumers of products containing this pigment. The method generally used for detection of proteins in carmine has low reproducibility and is time-consuming. In this study, a rapid, simple, and highly reproducible method was developed for the detection of protein contaminants in carmine. This method incorporates acidic protein denaturation conditions and ultrafiltration. To prevent protein aggregation, sodium dodecyl sulfate containing gel electrophoresis running buffer was used for dispersing the carmine before filtration. An ultrafiltration device was used to separate the protein contaminants from carminic acid in the carmine solution. Two ultrafiltration devices were compared, and a cylindrical device containing a modified polyethersulfone membrane gave the best results. The method had high reproducibility. PMID:25892994

  14. [Three-Iindex-Value Method for Rapid Screening Unqualified Vegetable Oil].

    PubMed

    He, Wen-xuan; Hong, Gui-shui; Fang, Run; Cai, Xian-chun; Huang, Sheng

    2015-04-01

    In the present study, by measuring the A3 005 (representing unsaturation), A985 (representing conjugated fatty acids), A960 + A985 (representing trans-fatty acid ) of southern common vegetable oils (peanut oil, corn oil, canola oil, soybean oil, sunflower oil, tea seed oil and olive oil), "waste oil" and overdue vegetable oils, the pass-setting-range of these three index values for the vegetable oils was obtained. On this basis, a method for rapid screening unqualified vegetable oil (expired, adding low-cost oil, adding "waste oil") was established. The method effectively improved the monitoring efficiency of vegetable oil. With this method of screening a number of suspected substandard oils were proved unqualified by determination of fatty acid composition and 11, 12, 13, 17 fatty acid content. Through the combination of several detection methods, the causes for disqualification of vegetable oils can be further inferred.

  15. A rapid method for the nonselective enumeration of Yersinia enterocolitica, a foodborne pathogen associated with pork.

    PubMed

    Wang, Haoran; Palmer, Jon; Flint, Steve

    2016-03-01

    An impedance method was developed as a rapid, convenient method to enumerate pure culture of Yersinia enterocolitica. Cultures were incubated in trypticase soy broth (TSB) at 30°C. The BacTrac™ 4000 microorganism growth analyser was used to detect impedance change of TSB representing bacteria cell numbers in the samples. Good correlations with standard plate counts were obtained (r(2)>0.95). This method is also reliable to enumerate Y. enterocolitica growing in biofilms attached to stainless steel. Compared with a standard plate count which involves dislodging biofilms from surfaces, this method is more convenient saving both time and effort. Therefore, it will be useful to study the conditions required for the biofilm growth and control of Y. enterocolitica that could be applied to the pork industry.

  16. Comparison of rapid methods for chemical analysis of milligram samples of ultrafine clays.

    USGS Publications Warehouse

    Rettig, S.L.; Marinenko, J.W.; Khoury, H.N.; Jones, B.F.

    1983-01-01

    Two rapid methods for the decomposition and chemical analysis of clays were adapted for use with 20-40mg size samples, typical amounts of ultrafine products (< 0.5 micrometer diameter) obtained from modern separation methods for clay minrals. The results of these methods were compared with those of 'classical' rock analyses. The two methods consisted of mixed lithium metaborate fusion and heated decomposition with HF in a closed vessel. The latter technique was modified to include subsequent evaporation with concentrated H2SO4 and re-solution in HCl, which reduced the interference of the fluoride ion in the determination of Al, Fe, Ca, Mg, Na, and K.-from Authors

  17. Rapid-Viability PCR Method for Detection of Live, Virulent Bacillus anthracis in Environmental Samples ▿

    PubMed Central

    Létant, Sonia E.; Murphy, Gloria A.; Alfaro, Teneile M.; Avila, Julie R.; Kane, Staci R.; Raber, Ellen; Bunt, Thomas M.; Shah, Sanjiv R.

    2011-01-01

    In the event of a biothreat agent release, hundreds of samples would need to be rapidly processed to characterize the extent of contamination and determine the efficacy of remediation activities. Current biological agent identification and viability determination methods are both labor- and time-intensive such that turnaround time for confirmed results is typically several days. In order to alleviate this issue, automated, high-throughput sample processing methods were developed in which real-time PCR analysis is conducted on samples before and after incubation. The method, referred to as rapid-viability (RV)-PCR, uses the change in cycle threshold after incubation to detect the presence of live organisms. In this article, we report a novel RV-PCR method for detection of live, virulent Bacillus anthracis, in which the incubation time was reduced from 14 h to 9 h, bringing the total turnaround time for results below 15 h. The method incorporates a magnetic bead-based DNA extraction and purification step prior to PCR analysis, as well as specific real-time PCR assays for the B. anthracis chromosome and pXO1 and pXO2 plasmids. A single laboratory verification of the optimized method applied to the detection of virulent B. anthracis in environmental samples was conducted and showed a detection level of 10 to 99 CFU/sample with both manual and automated RV-PCR methods in the presence of various challenges. Experiments exploring the relationship between the incubation time and the limit of detection suggest that the method could be further shortened by an additional 2 to 3 h for relatively clean samples. PMID:21764960

  18. Comparing models of rapidly rotating relativistic stars constructed by two numerical methods

    NASA Astrophysics Data System (ADS)

    Stergioulas, Nikolaos; Friedman, John L.

    1995-05-01

    We present the first direct comparison of codes based on two different numerical methods for constructing rapidly rotating relativistic stars. A code based on the Komatsu-Eriguchi-Hachisu (KEH) method (Komatsu et al. 1989), written by Stergioulas, is compared to the Butterworth-Ipser code (BI), as modified by Friedman, Ipser, & Parker. We compare models obtained by each method and evaluate the accuracy and efficiency of the two codes. The agreement is surprisingly good, and error bars in the published numbers for maximum frequencies based on BI are dominated not by the code inaccuracy but by the number of models used to approximate a continuous sequence of stars. The BI code is faster per iteration, and it converges more rapidly at low density, while KEH converges more rapidly at high density; KEH also converges in regions where BI does not, allowing one to compute some models unstable against collapse that are inaccessible to the BI code. A relatively large discrepancy recently reported (Eriguchi et al. 1994) for models based on Friedman-Pandharipande equation of state is found to arise from the use of two different versions of the equation of state. For two representative equations of state, the two-dimensional space of equilibrium configurations is displayed as a surface in a three-dimensional space of angular momentum, mass, and central density. We find, for a given equation of state, that equilibrium models with maximum values of mass, baryon mass, and angular momentum are (generically) either all unstable to collapse or are all stable. In the first case, the stable model with maximum angular velocity is also the model with maximum mass, baryon mass, and angular momentum. In the second case, the stable models with maximum values of these quantities are all distinct. Our implementation of the KEH method will be available as a public domain program for interested users.

  19. Note: Non-invasive optical method for rapid determination of alignment degree of oriented nanofibrous layers

    NASA Astrophysics Data System (ADS)

    Pokorny, M.; Klemes, J.; Rebicek, J.; Kotzianova, A.; Velebny, V.

    2015-10-01

    This paper presents a rapid non-destructive method that provides information on the anisotropic internal structure of nanofibrous layers. A laser beam of a wavelength of 632.8 nm is directed at and passes through a nanofibrous layer prepared by electrostatic spinning. Information about the structural arrangement of nanofibers in the layer is directly visible in the form of a diffraction image formed on a projection screen or obtained from measured intensities of the laser beam passing through the sample which are determined by the dependency of the angle of the main direction of polarization of the laser beam on the axis of alignment of nanofibers in the sample. Both optical methods were verified on Polyvinyl alcohol (PVA) nanofibrous layers (fiber diameter of 470 nm) with random, single-axis aligned and crossed structures. The obtained results match the results of commonly used methods which apply the analysis of electron microscope images. The presented simple method not only allows samples to be analysed much more rapidly and without damaging them but it also makes possible the analysis of much larger areas, up to several square millimetres, at the same time.

  20. Progress on the development of rapid methods for antimicrobial susceptibility testing.

    PubMed

    Pulido, Marina R; García-Quintanilla, Meritxell; Martín-Peña, Reyes; Cisneros, José Miguel; McConnell, Michael J

    2013-12-01

    Antimicrobial susceptibility testing is essential for guiding the treatment of many types of bacterial infections, especially in the current context of rising rates of antibiotic resistance. The most commonly employed methods rely on the detection of phenotypic resistance by measuring bacterial growth in the presence of the antibiotic being tested. Although these methods are highly sensitive for the detection of resistance, they require that the bacterial pathogen is isolated from the clinical sample before testing and must employ incubation times that are sufficient for differentiating resistant from susceptible isolates. Knowledge regarding the molecular determinants of antibiotic resistance has facilitated the development of novel approaches for the rapid detection of resistance in bacterial pathogens. PCR-based techniques, mass spectrometry, microarrays, microfluidics, cell lysis-based approaches and whole-genome sequencing have all demonstrated the ability to detect resistance in various bacterial species. However, it remains to be determined whether these methods can achieve sufficient sensitivity and specificity compared with standard phenotypic resistance testing to justify their use in routine clinical practice. In the present review, we discuss recent progress in the development of methods for rapid antimicrobial susceptibility testing and highlight the limitations of each approach that still remain be addressed.

  1. Note: Non-invasive optical method for rapid determination of alignment degree of oriented nanofibrous layers

    SciTech Connect

    Pokorny, M.; Rebicek, J.; Klemes, J.; Kotzianova, A.; Velebny, V.

    2015-10-15

    This paper presents a rapid non-destructive method that provides information on the anisotropic internal structure of nanofibrous layers. A laser beam of a wavelength of 632.8 nm is directed at and passes through a nanofibrous layer prepared by electrostatic spinning. Information about the structural arrangement of nanofibers in the layer is directly visible in the form of a diffraction image formed on a projection screen or obtained from measured intensities of the laser beam passing through the sample which are determined by the dependency of the angle of the main direction of polarization of the laser beam on the axis of alignment of nanofibers in the sample. Both optical methods were verified on Polyvinyl alcohol (PVA) nanofibrous layers (fiber diameter of 470 nm) with random, single-axis aligned and crossed structures. The obtained results match the results of commonly used methods which apply the analysis of electron microscope images. The presented simple method not only allows samples to be analysed much more rapidly and without damaging them but it also makes possible the analysis of much larger areas, up to several square millimetres, at the same time.

  2. Radiometric cloud imaging with an uncooled microbolometer thermal infrared camera.

    PubMed

    Shaw, Joseph; Nugent, Paul; Pust, Nathan; Thurairajah, Brentha; Mizutani, Kohei

    2005-07-25

    An uncooled microbolometer-array thermal infrared camera has been incorporated into a remote sensing system for radiometric sky imaging. The radiometric calibration is validated and improved through direct comparison with spectrally integrated data from the Atmospheric Emitted Radiance Interferometer (AERI). With the improved calibration, the Infrared Cloud Imager (ICI) system routinely obtains sky images with radiometric uncertainty less than 0.5 W/(m(2 )sr) for extended deployments in challenging field environments. We demonstrate the infrared cloud imaging technique with still and time-lapse imagery of clear and cloudy skies, including stratus, cirrus, and wave clouds. PMID:19498585

  3. Intraband radiometric performance of the Landsat Thematic Mappers.

    USGS Publications Warehouse

    Kieffer, H.H.; Cook, D.A.; Eliason, E.M.; Eliason, P.T.

    1985-01-01

    Radiometric characteristics have been examined of the Landsat-4 and Landsat-5 Thematic Mappers (TMs) that can be established without absolute calibration of spectral data. This analysis is based on radiometrically and geometrically raw (B-type) data of both uniform (flat-field) and high-contrast scenes. Subscenes selected for uniform radiance were used to characterized subtle radiometric differences and noise problems. Although the general performance of the Thematic Mappers is excellent, various anomalies that have a magnitude of a few digital levels (DN) or less are quantified. -from Authors

  4. Radiometric cloud imaging with an uncooled microbolometer thermal infrared camera.

    PubMed

    Shaw, Joseph; Nugent, Paul; Pust, Nathan; Thurairajah, Brentha; Mizutani, Kohei

    2005-07-25

    An uncooled microbolometer-array thermal infrared camera has been incorporated into a remote sensing system for radiometric sky imaging. The radiometric calibration is validated and improved through direct comparison with spectrally integrated data from the Atmospheric Emitted Radiance Interferometer (AERI). With the improved calibration, the Infrared Cloud Imager (ICI) system routinely obtains sky images with radiometric uncertainty less than 0.5 W/(m(2 )sr) for extended deployments in challenging field environments. We demonstrate the infrared cloud imaging technique with still and time-lapse imagery of clear and cloudy skies, including stratus, cirrus, and wave clouds.

  5. Laboratory Measurement of Bidirectional Reflectance of Radiometric Tarps

    NASA Technical Reports Server (NTRS)

    Knowlton, Kelly

    2006-01-01

    Objectives: a) To determine the magnitude of radiometric tarp BRDF; b) To determine whether an ASD FieldSpec Pro spectroradiometer can be used to perform the experiment. Radiometric tarps with nominal reflectance values of 52%, 35%, and 3.5%, deployed for IKONOS. QuickBird, and OrbView-3 overpasses Ground-based spectroradiometric measurements of tarp and Spectralon@ panel taken during overpass using ASD FieldSpec Pro spectroradiometer, and tarp reflectance calculated. Reflectance data used in atmospheric radiative transfer model (MODTRAN) to predict satellite at-sensor radiance for radiometric calibration. Reflectance data also used to validate atmospheric correction of high-spatial-resolution multispectral image products

  6. Rapid detection and identification of beer-spoilage lactic acid bacteria by microcolony method.

    PubMed

    Asano, Shizuka; Iijima, Kazumaru; Suzuki, Koji; Motoyama, Yasuo; Ogata, Tomoo; Kitagawa, Yasushi

    2009-08-01

    We evaluated a microcolony method for the detection and identification of beer-spoilage lactic acid bacteria (LAB). In this approach, bacterial cells were trapped on a polycarbonate membrane filter and cultured on ABD medium, a medium that allows highly specific detection of beer-spoilage LAB strains. After short-time incubation, viable cells forming microcolonies were stained with carboxyfluorescein diacetate (CFDA) and counted with muFinder Inspection System. In our study, we first investigated the growth behavior of various beer-spoilage LAB by traditional culture method, and Lactobacillus lindneri and several L. paracollinoides strains were selected as slow growers on ABD medium. Then the detection speeds were evaluated by microcolony method, using these slowly growing strains. As a result, all of the slowly growing beer-spoilage LAB strains were detected within 3 days of incubation. The specificity of this method was found to be exceptionally high and even discriminated intra-species differences in beer-spoilage ability of LAB strains upon detection. These results indicate that our microcolony approach allows rapid and specific detection of beer-spoilage LAB strains with inexpensive CFDA staining. For further confirmation of species status of detected strains, subsequent treatment with species-specific fluorescence in situ hybridization (FISH) probes was shown as effective for identifying the CFDA-detected microcolonies to the species level. In addition, no false-positive results arising from noise signals were recognized for CFDA staining and FISH methods. Taken together, the developed microcolony method was demonstrated as a rapid and highly specific countermeasure against beer-spoilage LAB, and compared favorably with the conventional culture methods. PMID:19619859

  7. Microwave-accelerated method for ultra-rapid extraction of Neisseria gonorrhoeae DNA for downstream detection.

    PubMed

    Melendez, Johan H; Santaus, Tonya M; Brinsley, Gregory; Kiang, Daniel; Mali, Buddha; Hardick, Justin; Gaydos, Charlotte A; Geddes, Chris D

    2016-10-01

    Nucleic acid-based detection of gonorrhea infections typically require a two-step process involving isolation of the nucleic acid, followed by detection of the genomic target often involving polymerase chain reaction (PCR)-based approaches. In an effort to improve on current detection approaches, we have developed a unique two-step microwave-accelerated approach for rapid extraction and detection of Neisseria gonorrhoeae (gonorrhea, GC) DNA. Our approach is based on the use of highly focused microwave radiation to rapidly lyse bacterial cells, release, and subsequently fragment microbial DNA. The DNA target is then detected by a process known as microwave-accelerated metal-enhanced fluorescence (MAMEF), an ultra-sensitive direct DNA detection analytical technique. In the current study, we show that highly focused microwaves at 2.45 GHz, using 12.3-mm gold film equilateral triangles, are able to rapidly lyse both bacteria cells and fragment DNA in a time- and microwave power-dependent manner. Detection of the extracted DNA can be performed by MAMEF, without the need for DNA amplification, in less than 10 min total time or by other PCR-based approaches. Collectively, the use of a microwave-accelerated method for the release and detection of DNA represents a significant step forward toward the development of a point-of-care (POC) platform for detection of gonorrhea infections. PMID:27325503

  8. Fluorescein: a rapid, sensitive, nonlethal method for detecting skin ulceration in fish.

    PubMed

    Noga, E J; Udomkusonsri, P

    2002-11-01

    There is a need to develop simple, rapid, and accurate methods for assessing health in fish populations. In this study we demonstrate that use of fluorescein, a nontoxic fluorescent dye, can rapidly and easily detect the presence of skin ulcers in all fish tested, including rainbow trout (Oncorhynchus mykiss), channel catfish (Ictalurus punctatus), goldfish (Carassius auratus), and hybrid striped bass (Morone saxatilis male X M. chrysops female). Exposure of fish to as little as 0.10 mg fluorescein per milliliter of water for 3 minutes was sufficient to identify experimentally induced lesions, even pinpoint ulcerations. Such lesions were not visible to the naked eye but were clearly demarcated with fluorescein treatment. Examination of fish that appeared clinically normal often revealed the presence of focal ulcerations, which might have been a consequence of damage during capture, but it also might suggest that skin ulceration may be common even in "clinically normal" fish. Exposure of either nonulcerated or experimentally ulcerated hybrid striped bass to an excessively high concentration of fluorescein had no apparent effect on health or survival. Our studies suggest that fluorescein may be a highly useful tool for rapid health screening in fish populations.

  9. Rapid determination of methyl mercury in fish and shellfish: method development.

    PubMed

    Hight, S C; Corcoran, M T

    1987-01-01

    The AOAC official first action method for methyl mercury in fish and shellfish was modified to provide more rapid determination. Methyl mercury is isolated from homogenized, acetone-washed tissue by addition of HCl and extraction by toluene of the methyl mercuric chloride produced. The extract is analyzed by electron capture gas chromatography (GC) on 5% DEGS-PS treated with mercuric chloride solution. The quantitation limit of the method is 0.25 micrograms Hg/g. Swordfish, shark, tuna, shrimp, clams, oysters, and NBS Research Material-50 (tuna) were analyzed for methyl mercury by the AOAC official first action method. All products also were analyzed by the modified method and the AOAC official method for total Hg. In addition, selected extracts obtained with the modified method were analyzed by GC with Hg-selective, microwave-induced helium plasma detection. There was no significant difference between the results for the various methods. Essentially all the Hg present (determined as total Hg) was in the organic form. Coefficients of variation from analyses by the modified method ranged from 1 to 7% for fish and shellfish containing methyl mercury at levels of 0.50-2.30 micrograms Hg/g. The overall average recovery was 100.5%.

  10. Rapid Method for Ra-226 and Ra-228 in Water Samples

    SciTech Connect

    Maxwell, Sherrod, L. III

    2006-02-10

    The measurement of radium isotopes in natural waters is important for oceanographic studies and for public health reasons. Ra-226 (1620 year half-life) is one of the most toxic of the long-lived alpha emitters present in the environment due to its long life and its tendency to concentrate in bones, which increases the internal radiation dose of individuals. The analysis of radium-226 and radium-228 in natural waters can be tedious and time-consuming. Different sample preparation methods are often required to prepare Ra-226 and Ra-228 for separate analyses. A rapid method has been developed at the Savannah River Environmental Laboratory that effectively separates both Ra-226 and Ra-228 (via Ac-228) for assay. This method uses MnO{sub 2} Resin from Eichrom Technologies (Darien, IL, USA) to preconcentrate Ra-226 and Ra-228 rapidly from water samples, along with Ba-133 tracer. DGA Resin{reg_sign} (Eichrom) and Ln-Resin{reg_sign} (Eichrom) are employed in tandem to prepare Ra-226 for assay by alpha spectrometry and to determine Ra-228 via the measurement of Ac-228 by gas proportional counting. After preconcentration, the manganese dioxide is dissolved from the resin and passed through stacked Ln-Resin-DGA Resin cartridges that remove uranium and thorium interferences and retain Ac-228 on DGA Resin. The eluate that passed through this column is evaporated, redissolved in a lower acidity and passed through Ln-Resin again to further remove interferences before performing a barium sulfate microprecipitation. The Ac-228 is stripped from the resin, collected using cerium fluoride microprecipitation and counted by gas proportional counting. By using vacuum box cartridge technology with rapid flow rates, sample preparation time is minimized.

  11. [Contamination level of aflatoxin B1 in lotus seeds rapid screening by indirect competitive ELISA method].

    PubMed

    Chu, Xian-feng; Dou, Xiao-wen; Kong, Wei-jun; Yang, Mei-hua; Zhao, Chong; Zhao, Ming; Ouyang, Zhen

    2015-02-01

    A simple and cost-effective indirect competitive enzyme-linked immune sorbent assay (ic-ELISA) was developed to rapidly screen the content of aflatoxin B1 (AFB1) in lotus seeds, and the results were confirmed by ultra-fast liquid chromatography-tandem mass spectrometry( UFLC-MS/MS). Matrix-matched calibration expressed a good linearity ranging from 0. 171 to 7. 25 µg · L(-1) for AFB, with R2 > 0.978. The medium inhibitory concentration( IC50 ) for AFB1 was 1.29 µg · L(-1), the recovery for AFB1 was 74.73% to 126.9% with RSD < 5%, and the limit of detection (IC10) was 0.128 µg · L(-1). The developed ic-ELSIA method was applied to rapid analysis of AFB, in 20 lotus seeds samples and the results indicated that the contents of AFB, in samples 1-15 were in the range of 1. 19- 115. 3 µg · kg(-1) and in 40% of the samples exceeded the legal limit(5 µg · kg(-1)), while the contamination rate of AFB, in samples 16-20 was 40%. Pearson correlation coefficient(r) reached 0.997 for AFB1 content in the samples detected by ic-ELSIA and UFLC-MS/MS methods. The results proved that the developed ic-ELISA method is simple, sensitive and reliable, and can be used for rapid and high-throughput screening of AFB1 in lotus seeds

  12. Limits of rapid log P determination methods for highly lipophilic and flexible compounds.

    PubMed

    Martel, Sophie; Begnaud, Frédéric; Schuler, William; Gillerat, Fabrice; Oberhauser, Nils; Nurisso, Alessandra; Carrupt, Pierre-Alain

    2016-04-01

    Lipophilicity is of crucial importance in many fields including pharmaceutical, environmental, cosmetic and food industries. Whereas different experimental strategies have been developed for rapid lipophilicity determination of new chemical entities, log P determination of highly lipophilic compounds is always challenging. In this study, three published chromatographic methods have been compared on a series of phenylalkanoic acids including the pro-perfume HaloscentD (HD-C12). Different log P values were obtained depending on the chromatographic method used for log P estimation. Molecular modelling suggested that log P variations may be due to the chromatographic conditions applied (isocratic or gradient mode, ratio methanol/water in the mobile phase), responsible of specific conformations of the molecule in solution. Thus, for flexible compounds, published methods have to be used with caution and considered as a good tool to estimate a log P range, depending on the molecular conformational state.

  13. Rapid method for determining concentrations of Bayer 73 in water during lampricide treatments

    USGS Publications Warehouse

    Dawson, V.K.; Harman, P.D.; Schultz, D.P.; Allen, J.L.

    1978-01-01

    Two simple, rapid, sensitive methods were developed for determining the concentration of the lampricide 2',5-dichloro-4'-nitrosalicylanilide (Bayer 73) in stream water. Bayer 73 was extracted from acidified water samples with chloroform and then hydrolyzed to 2-chloro-4-nitroaniline (CNA) with either acid or base. The CNA was diazotized with sodium nitrite, and an azo dye was formed with either N-( 1-naphthyl) ethylenediamine dihydrochloride (after acid hydrolysis) or 1-naphthol (after base hydrolysis). There was no interference from the lampricide 3-trifluoromethyl-4-nitrophenol (TFM) in either method. Standard curves were prepared with untreated water to compensate for interfering substances that occurred naturally in some streams. The methods were sensitive to about 0.005 mg/L (ppm). Time required for analysis of a sample ranged from 25 min to 1 h.

  14. A Rapid and Cost-Effective Method for DNA Extraction from Archival Herbarium Specimens.

    PubMed

    Krinitsina, A A; Sizova, T V; Zaika, M A; Speranskaya, A S; Sukhorukov, A P

    2015-11-01

    Here we report a rapid and cost-effective method for the extraction of total DNA from herbarium specimens up to 50-90-year-old. The method takes about 2 h, uses AMPure XP magnetic beads diluted by PEG-8000- containing buffer, and does not require use of traditional volatile components like chloroform, phenol, and liquid nitrogen. It yields up to 4 µg of total nucleic acid with high purity from about 30 mg of dry material. The quality of the extracted DNA was tested by PCR amplification of 5S rRNA and rbcL genes (nuclear and chloroplast DNA markers) and compared against the traditional chloroform/isoamyl alcohol method. Our results demonstrate that the use of the magnetic beads is crucial for extraction of DNA suitable for subsequent PCR from herbarium samples due to the decreasing inhibitor concentrations, reducing short fragments of degraded DNA, and increasing median DNA fragment sizes.

  15. A rapid method for the detection of tryptophanase in anaerobic bacteria.

    PubMed

    Karim, M R; Qadri, S M; Flournoy, D J

    1981-01-01

    A total of 633 anaerobic bacteria were examined for tryptophanase production using a rapid method which distinguishes within 5 to 180 minutes between anaerobes that contain tryptophanase and those that do not. Of the 196 tryptophanase-positive isolates tested, 99% showed tryptophanase activity within 2 hours as compared with 94.4% in 24 hours by a conventional method. A total of 299 tryptophanase-negative organisms were tested. Ninety three percent of these remained negative after 24 hours as compared with 95.3% when tested within a 24-h conventional method. Additional information was obtained on the sensitivity of this test and the time-dependent production of indole by tryptophanase.

  16. Rapid and low-level toxic PCR-based method for routine identification of Flavobacterium psychrophilum.

    PubMed

    Cepeda, C; Santos, Y

    2000-12-01

    We describe a rapid, low-toxicity and simple method for the detection of the bacterial fish pathogen Flavobacterium psychrophilum. The method, based on the polymerase chain reaction (PCR), combined the electrophoresis of PCR products in a vertical agarose gel and a modified methylene blue stain. DNA was amplified directly either from bacterial suspensions or from tissues experimentally infected with F. psychrophilum, using different non-toxic commercial DNA extraction kits. The protocol allowed to detect 15 to 150 cells of the pathogen in bacterial suspension, without prior DNA extraction, and 7500 to 75,000 cells in seeded spleen tissue and ovarian fluid using Dynabeads DNA DIRECT extraction system. This method, which has the advantage of not using hazardous products, is proposed as a fast tool for routine identification of F. psychrophilum.

  17. Fibpredictor: a computational method for rapid prediction of amyloid fibril structures.

    PubMed

    Tabatabaei Ghomi, Hamed; Topp, Elizabeth M; Lill, Markus A

    2016-09-01

    Amyloid fibrils are important in diseases such as Alzheimer's disease and Parkinson's disease, and are also a common instability in peptide and protein drug products. Despite their importance, experimental structures of amyloid fibrils in atomistic detail are rare. To address this limitation, we have developed a novel, rapid computational method to predict amyloid fibril structures (Fibpredictor). The method combines β-sheet model building, β-sheet replication, and symmetry operations with side-chain prediction and statistical scoring functions. When applied to nine amyloid fibrils with experimentally determined structures, the method predicted the correct structures of amyloid fibrils and enriched those among the top-ranked structures. These models can be used as the initial heuristic structures for more complicated computational studies. Fibpredictor is available at http://nanohub.org/resources/fibpredictor .

  18. Rapid staining method to detect and identify downy mildew (Peronospora belbahrii) in basil1

    PubMed Central

    Koroch, Adolfina R.; Villani, Thomas S.; Pyne, Robert M.; Simon, James E.

    2013-01-01

    • Premise of the study: Demand for fresh-market sweet basil continues to increase, but in 2009 a new pathogen emerged, threatening commercial field/greenhouse production and leading to high crop losses. This study describes a simple and effective staining method for rapid microscopic detection of basil downy mildew (Peronospora belbahrii) from leaves of basil (Ocimum basilicum). • Methods and Results: Fresh leaf sections infected with P. belbahrii were placed on a microscope slide, cleared with Visikol™, and stained with iodine solution followed by one drop of 70% sulfuric acid. Cell walls of the pathogen were stained with a distinct coloration, providing a high-contrast image between the pathogen and plant. • Conclusions: This new staining method can be used successfully to identify downy mildew in basil, which then can significantly reduce its spread if identified early, coupled with mitigation strategies. This technique can facilitate the control of the disease, without expensive and specialized equipment. PMID:25202569

  19. Limits of rapid log P determination methods for highly lipophilic and flexible compounds.

    PubMed

    Martel, Sophie; Begnaud, Frédéric; Schuler, William; Gillerat, Fabrice; Oberhauser, Nils; Nurisso, Alessandra; Carrupt, Pierre-Alain

    2016-04-01

    Lipophilicity is of crucial importance in many fields including pharmaceutical, environmental, cosmetic and food industries. Whereas different experimental strategies have been developed for rapid lipophilicity determination of new chemical entities, log P determination of highly lipophilic compounds is always challenging. In this study, three published chromatographic methods have been compared on a series of phenylalkanoic acids including the pro-perfume HaloscentD (HD-C12). Different log P values were obtained depending on the chromatographic method used for log P estimation. Molecular modelling suggested that log P variations may be due to the chromatographic conditions applied (isocratic or gradient mode, ratio methanol/water in the mobile phase), responsible of specific conformations of the molecule in solution. Thus, for flexible compounds, published methods have to be used with caution and considered as a good tool to estimate a log P range, depending on the molecular conformational state. PMID:26995644

  20. DNA extraction from archival Giemsa-stained bone-marrow slides: comparison of six rapid methods.

    PubMed

    Vince, A; Poljak, M; Seme, K

    1998-05-01

    The ability of six rapid DNA extraction procedures to provide DNA for the polymerase chain reaction from archival Giemsa-stained bone marrow slides was tested on 120 samples. Boiling in distilled water, freeze-thaw method, boiling in 10% Chelex-100 resin solution, proteinase K/Tween 20/NP-40 method coupled with simplified phenol/ chloroform/isoamyl alcohol protocol or salting-out procedure using saturated NaCl and modification of commercial QIAamp procedure (Qiagen. Chatsworth, Calif.) gave DNA extraction efficiencies of 50%, 70%, 85%, 95%, 100% and 100%, respectively. Our results demonstrate that rough DNA extraction methods have decreased efficiencies compared to complete DNA extraction protocols and that the latter are required to ensure highly reproducible results from archival Giemsa-stained bone marrow slides.

  1. A rapid numerical method for horizontal fluid flow in unsaturated soils

    NASA Astrophysics Data System (ADS)

    Kirby, J. M.

    1984-06-01

    A rapid numerical method for the horizontal flow of water is presented, based on the approximation for conductivity k = k0 exp (αψ). A simple expression for the velocity of flow is obtained, which produces accurate solutions to horizontal infiltration problems even with very large time and length steps. The method is compared with previous solutions, including the much studied Yolo light clay infiltration problems. These examples are used to demonstrate the accuracy and economy (in terms of the time and necessary computer power) of the solution. The method is accurate for any choice of length step, provided that the time step is below a certain limit which is related to the length step. An expression for estimating the maximum permissible time step is presented and its use demonstrated via one of the examples.

  2. Fibpredictor: a computational method for rapid prediction of amyloid fibril structures.

    PubMed

    Tabatabaei Ghomi, Hamed; Topp, Elizabeth M; Lill, Markus A

    2016-09-01

    Amyloid fibrils are important in diseases such as Alzheimer's disease and Parkinson's disease, and are also a common instability in peptide and protein drug products. Despite their importance, experimental structures of amyloid fibrils in atomistic detail are rare. To address this limitation, we have developed a novel, rapid computational method to predict amyloid fibril structures (Fibpredictor). The method combines β-sheet model building, β-sheet replication, and symmetry operations with side-chain prediction and statistical scoring functions. When applied to nine amyloid fibrils with experimentally determined structures, the method predicted the correct structures of amyloid fibrils and enriched those among the top-ranked structures. These models can be used as the initial heuristic structures for more complicated computational studies. Fibpredictor is available at http://nanohub.org/resources/fibpredictor . PMID:27502172

  3. A method of rapidly evaluating image quality of NED optical system

    NASA Astrophysics Data System (ADS)

    Sun, Qi; Qiu, Chuankai; Yang, Huan

    2014-11-01

    In recent years, with the development of technology of micro-display, advanced optics and the software and hardware, near-to-eye display ( NED) optical system will have a wide range of potential applications in the fields of amusement and virtual reality. However, research on the evaluating image quality of this kind optical system is comparatively lagging behind. Although now there are some methods and equipment for evaluation, they can't be applied in commercial production because of their complex operation and inaccuracy. In this paper, an academic method is proposed and a Rapid Evaluation System (RES) is designed to evaluate the image of optical system rapidly and exactly. Firstly, a set of parameters that eyes are sensitive to and also express the quality of system should be extracted and quantized to be criterion, so the evaluation standards can be established. Then, some parameters can be detected by RES consisted of micro-display, CCD camera and computer and so on. By process of scaling, the measuring results of the RES are exact and creditable, relationship between object measurement, subjective evaluation and the RES will be established. After that, image quality of optical system can be evaluated just by detecting parameters of that. The RES is simple and the results of evaluation are exact and keeping with human vision. So the method can be used not only for optimizing design of optical system, but also for evaluation in commercial production.

  4. An evaluation of rapid methods for monitoring vegetation characteristics of wetland bird habitat

    USGS Publications Warehouse

    Tavernia, Brian G; Lyons, James E.; Loges, Brian W; Wilson, Andrew; Collazo, Jaime; Runge, Michael C.

    2016-01-01

    Wetland managers benefit from monitoring data of sufficient precision and accuracy to assess wildlife habitat conditions and to evaluate and learn from past management decisions. For large-scale monitoring programs focused on waterbirds (waterfowl, wading birds, secretive marsh birds, and shorebirds), precision and accuracy of habitat measurements must be balanced with fiscal and logistic constraints. We evaluated a set of protocols for rapid, visual estimates of key waterbird habitat characteristics made from the wetland perimeter against estimates from (1) plots sampled within wetlands, and (2) cover maps made from aerial photographs. Estimated percent cover of annuals and perennials using a perimeter-based protocol fell within 10 percent of plot-based estimates, and percent cover estimates for seven vegetation height classes were within 20 % of plot-based estimates. Perimeter-based estimates of total emergent vegetation cover did not differ significantly from cover map estimates. Post-hoc analyses revealed evidence for observer effects in estimates of annual and perennial covers and vegetation height. Median time required to complete perimeter-based methods was less than 7 percent of the time needed for intensive plot-based methods. Our results show that rapid, perimeter-based assessments, which increase sample size and efficiency, provide vegetation estimates comparable to more intensive methods.

  5. Comparison of rapid methods of detection of cytomegalovirus in saliva with virus isolation in tissue culture.

    PubMed

    Warren, W P; Balcarek, K; Smith, R; Pass, R F

    1992-04-01

    Two rapid methods for the detection of cytomegalovirus (CMV) in saliva from congenitally and perinatally infected children were assessed by comparison with traditional virus isolation in tissue culture (TC). The polymerase chain reaction (PCR) was used to amplify a 300-bp segment of the CMV gB gene which was detected in ethidium bromide-stained agarose gels. A centrifugation-enhanced microtiter culture method with a monoclonal antibody for the detection of early-antigen fluorescent foci (DEAFF) was also used. Saliva specimens were collected with mouth swabs from children who were between the ages of 1 month and 14 years and who had either prenatal or perinatal CMV infection. One hundred sixty samples were tested by PCR and TC; 65 (40.6%) were found positive by TC, and 58 (36.8%) were found positive by PCR. Although four samples were found positive by PCR and negative by TC, saliva from seronegative and seropositive TC-negative adults were never found positive by PCR. One hundred fifty-two samples were tested by DEAFF and TC; 64 (42.1%) were found positive by TC, and 58 (38.2%) were found positive by DEAFF. With TC results as a standard, the sensitivity and specificity of DEAFF were, respectively, 90.6 and 97.7%. Because of the greater ease of collecting saliva than urine from newborns, both of these rapid methods merit evaluation in screening for congenital infection.

  6. High Resolution Melting Analysis: A Rapid and Accurate Method to Detect CALR Mutations

    PubMed Central

    Moreno, Melania; Torres, Laura; Santana-Lopez, Gonzalo; Rodriguez-Medina, Carlos; Perera, María; Bellosillo, Beatriz; de la Iglesia, Silvia; Molero, Teresa; Gomez-Casares, Maria Teresa

    2014-01-01

    Background The recent discovery of CALR mutations in essential thrombocythemia (ET) and primary myelofibrosis (PMF) patients without JAK2/MPL mutations has emerged as a relevant finding for the molecular diagnosis of these myeloproliferative neoplasms (MPN). We tested the feasibility of high-resolution melting (HRM) as a screening method for rapid detection of CALR mutations. Methods CALR was studied in wild-type JAK2/MPL patients including 34 ET, 21 persistent thrombocytosis suggestive of MPN and 98 suspected secondary thrombocytosis. CALR mutation analysis was performed through HRM and Sanger sequencing. We compared clinical features of CALR-mutated versus 45 JAK2/MPL-mutated subjects in ET. Results Nineteen samples showed distinct HRM patterns from wild-type. Of them, 18 were mutations and one a polymorphism as confirmed by direct sequencing. CALR mutations were present in 44% of ET (15/34), 14% of persistent thrombocytosis suggestive of MPN (3/21) and none of the secondary thrombocytosis (0/98). Of the 18 mutants, 9 were 52 bp deletions, 8 were 5 bp insertions and other was a complex mutation with insertion/deletion. No mutations were found after sequencing analysis of 45 samples displaying wild-type HRM curves. HRM technique was reproducible, no false positive or negative were detected and the limit of detection was of 3%. Conclusions This study establishes a sensitive, reliable and rapid HRM method to screen for the presence of CALR mutations. PMID:25068507

  7. A universal, rapid method for clean transfer of nanostructures onto various substrates.

    PubMed

    Li, Hai; Wu, Jumiati; Huang, Xiao; Yin, Zongyou; Liu, Juqing; Zhang, Hua

    2014-07-22

    Transfer and integration of nanostructures onto target substrates is the prerequisite for their fundamental studies and practical applications. Conventional transfer techniques that involve stamping, lift-off, and/or striping suffer from the process-specific drawbacks, such as the requirement for chemical etchant or high-temperature annealing and the introduction of surface discontinuities and/or contaminations that can greatly hinder the properties and functions of the transferred materials. Herein, we report a universal and rapid transfer method implementable at mild conditions. Nanostructures with various dimensionalities (i.e., nanoparticles, nanowires, and nanosheets) and surface properties (i.e., hydrophilic and hydrophobic) can be easily transferred to diverse substrates including hydrophilic, hydrophobic, and flexible surfaces with good fidelity. Importantly, our method ensures the rapid and clean transfer of two-dimensional materials and allows for the facile fabrication of vertical heterostructures with various compositions used for electronic devices. We believe that our method can facilitate the development of nanoelectronics by accelerating the clean transfer and integration of low-dimensional materials into multidimensional structures.

  8. A method to provide rapid in situ determination of tip radius in dynamic atomic force microscopy.

    PubMed

    Santos, Sergio; Guang, Li; Souier, Tewfik; Gadelrab, Karim; Chiesa, Matteo; Thomson, Neil H

    2012-04-01

    We provide a method to characterize the tip radius of an atomic force microscopy in situ by monitoring the dynamics of the cantilever in ambient conditions. The key concept is that the value of free amplitude for which transitions from the attractive to repulsive force regimes are observed, strongly depends on the curvature of the tip. In practice, the smaller the value of free amplitude required to observe a transition, the sharper the tip. This general behavior is remarkably independent of the properties of the sample and cantilever characteristics and shows the strong dependence of the transitions on the tip radius. The main advantage of this method is rapid in situ characterization. Rapid in situ characterization enables one to continuously monitor the tip size during experiments. Further, we show how to reproducibly shape the tip from a given initial size to any chosen larger size. This approach combined with the in situ tip size monitoring enables quantitative comparison of materials measurements between samples. These methods are set to allow quantitative data acquisition and make direct data comparison readily available in the community.

  9. Apparatus and method for rapid detection of explosives residue from the deflagration signature thereof

    DOEpatents

    Funsten, Herbert O.; McComas, David J.

    1997-01-01

    Apparatus and method for rapid detection of explosives residue from the deflagration signature thereof. A property inherent to most explosives is their stickiness, resulting in a strong tendency of explosive particulate to contaminate the environment of a bulk explosive. An apparatus for collection of residue particulate, burning the collected particulate, and measurement of the optical emission produced thereby is described. The present invention can be utilized for real-time screening of personnel, cars, packages, suspected devices, etc., and provides an inexpensive, portable, and noninvasive means for detecting explosives.

  10. Apparatus and method for rapid detection of explosives residue from the deflagration signature thereof

    DOEpatents

    Funsten, H.O.; McComas, D.J.

    1999-06-15

    Apparatus and method are disclosed for rapid detection of explosives residue from the deflagration signature thereof. A property inherent to most explosives is their stickiness, resulting in a strong tendency of explosive particulate to contaminate the environment of a bulk explosive. An apparatus for collection of residue particulate, burning the collected particulate, and measurement of the ultraviolet emission produced thereby, is described. The present invention can be utilized for real-time screening of personnel, cars, packages, suspected devices, etc., and provides an inexpensive, portable, and noninvasive means for detecting explosives. 4 figs.

  11. Apparatus and method for rapid detection of explosives residue from the deflagration signature thereof

    DOEpatents

    Funsten, Herbert O.; McComas, David J.

    1999-01-01

    Apparatus and method for rapid detection of explosives residue from the deflagration signature thereof. A property inherent to most explosives is their stickiness, resulting in a strong tendency of explosive particulate to contaminate the environment of a bulk explosive. An apparatus for collection of residue particulate, burning the collected particulate, and measurement of the ultraviolet emission produced thereby, is described. The present invention can be utilized for real-time screening of personnel, cars, packages, suspected devices, etc., and provides an inexpensive, portable, and noninvasive means for detecting explosives.

  12. [Rapid diagnosis of rabies by the ELISA method. Its application in Madagascar: advantages and disadvantages].

    PubMed

    Morvan, J; Mouden, J C; Coulanges, P

    1990-01-01

    ELISA technique in the rabies rapid diagnosis is compared with other methods used in the PASTEUR Institute of MADAGASCAR (immunofluorescence, mouse inoculation, and histopathology). The results of the comparative study of 80 samples of suspect animals show that ELISA sensibility is better than immunofluorescence one. Sensibility, specificity and viability of ELISA are comparable with those of the two confirmation techniques. In MADAGASCAR, ELISA is adapted to testing samples not conserved in good conditions, exposed to heat, after a big travelling time. It is to be hoped that samples are numerous to control rabies: in this condition price of ELISA is not expensive.

  13. Evaluation of three rapid diagnostic methods for direct identification of microorganisms in positive blood cultures.

    PubMed

    Martinez, Raquel M; Bauerle, Elizabeth R; Fang, Ferric C; Butler-Wu, Susan M

    2014-07-01

    The identification of organisms from positive blood cultures generally takes several days. However, recently developed rapid diagnostic methods offer the potential for organism identification within only a few hours of blood culture positivity. In this study, we evaluated the performance of three commercial methods to rapidly identify organisms directly from positive blood cultures: QuickFISH (AdvanDx, Wolburn, MA), Verigene Gram-Positive Blood Culture (BC-GP; Nanosphere, Northbrook, IL), and matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) with Sepsityper processing (Bruker Daltonics, Billerica, MA). A total of 159 blood cultures (VersaTREK Trek Diagnostic Systems, Cleveland, OH) positive for Gram-positive and Gram-negative bacteria as well as yeast were analyzed with QuickFISH and MALDI-TOF MS. In all, 102 blood cultures were analyzed using the BC-GP assay. For monomicrobial cultures, we observed 98.0% concordance with routine methods for both QuickFISH (143/146) and the BC-GP assay (93/95). MALDI-TOF MS demonstrated 80.1% (117/146) and 87.7% (128/146) concordance with routine methods to the genus and species levels, respectively. None of the methods tested were capable of consistently identifying polymicrobial cultures in their entirety or reliably differentiating Streptococcus pneumoniae from viridans streptococci. Nevertheless, the methods evaluated in this study are convenient and accurate for the most commonly encountered pathogens and have the potential to dramatically reduce turnaround time for the provision of results to the treating physician.

  14. Rapid acid digestion and simple microplate method for milk iodine determination.

    PubMed

    Hedayati, Mehdi; Ordookhani, Arash; Daneshpour, Maryam Sadat; Azizi, Fereidoun

    2007-01-01

    Iodine deficiency leads to deficiency of thyroid hormones, which causes mental retardation in infant. Laboratory confirmation is important in its diagnosis. The major problems associated with the existing methods for iodine determination in milk samples are: 1) nonsafe alkaline solution; 2) harsh thermal condition; and 3) extra time required to complete various steps. In this study, a simple and rapid colorimetric method was investigated, which used acid digestion in combination with a rapid microplate reading format method to determine the total iodine content in milk. Sample digestion was done on 50 microL milk in metavanadate/perchloric, at 230 degrees C for 10 min. After digestion, iodine determination was based on the Sandell-Kolthoff reaction. The reaction results were read in 96-well microplates by an enzyme-linked immunosorbent assay (ELISA) reader. The determination range of the assay was between 2 and 40 microg/dL. The within-run coefficient of variation percent in three levels (3, 12, and 36 microg/dL) ranged from 6.7 to 9.3 and between-run coefficients of variation ranged from 8.6 to 12.3%. The results obtained (n=70) by the optimized method have good correlation with the results of alkaline incineration as a reference method (n=70; r2=0.907; y=0.952x+1.77). Recovery tests for accuracy assessment in six levels from 6.2 to 34.2 microg/dL) were between 91.3 and 113%. This method has enabled us to achieve 0.12 microg/dL sensitivity. The results of this study show that a quick acid digestion combined with mild thermal and low sample volume with a quick reading of assay results were the main advantages of the acid digestion and microplate reading format. PMID:17847102

  15. Evaluation of Three Rapid Diagnostic Methods for Direct Identification of Microorganisms in Positive Blood Cultures

    PubMed Central

    Martinez, Raquel M.; Bauerle, Elizabeth R.; Fang, Ferric C.

    2014-01-01

    The identification of organisms from positive blood cultures generally takes several days. However, recently developed rapid diagnostic methods offer the potential for organism identification within only a few hours of blood culture positivity. In this study, we evaluated the performance of three commercial methods to rapidly identify organisms directly from positive blood cultures: QuickFISH (AdvanDx, Wolburn, MA), Verigene Gram-Positive Blood Culture (BC-GP; Nanosphere, Northbrook, IL), and matrix-assisted laser desorption ionization–time of flight mass spectrometry (MALDI-TOF MS) with Sepsityper processing (Bruker Daltonics, Billerica, MA). A total of 159 blood cultures (VersaTREK Trek Diagnostic Systems, Cleveland, OH) positive for Gram-positive and Gram-negative bacteria as well as yeast were analyzed with QuickFISH and MALDI-TOF MS. In all, 102 blood cultures were analyzed using the BC-GP assay. For monomicrobial cultures, we observed 98.0% concordance with routine methods for both QuickFISH (143/146) and the BC-GP assay (93/95). MALDI-TOF MS demonstrated 80.1% (117/146) and 87.7% (128/146) concordance with routine methods to the genus and species levels, respectively. None of the methods tested were capable of consistently identifying polymicrobial cultures in their entirety or reliably differentiating Streptococcus pneumoniae from viridans streptococci. Nevertheless, the methods evaluated in this study are convenient and accurate for the most commonly encountered pathogens and have the potential to dramatically reduce turnaround time for the provision of results to the treating physician. PMID:24808235

  16. Relative Radiometric Normalization and Atmospheric Correction of a SPOT 5 Time Series

    PubMed Central

    Hajj, Mahmoud El; Bégué, Agnès; Lafrance, Bruno; Hagolle, Olivier; Dedieu, Gérard; Rumeau, Matthieu

    2008-01-01

    Multi-temporal images acquired at high spatial and temporal resolution are an important tool for detecting change and analyzing trends, especially in agricultural applications. However, to insure a reliable use of this kind of data, a rigorous radiometric normalization step is required. Normalization can be addressed by performing an atmospheric correction of each image in the time series. The main problem is the difficulty of obtaining an atmospheric characterization at a given acquisition date. In this paper, we investigate whether relative radiometric normalization can substitute for atmospheric correction. We develop an automatic method for relative radiometric normalization based on calculating linear regressions between unnormalized and reference images. Regressions are obtained using the reflectances of automatically selected invariant targets. We compare this method with an atmospheric correction method that uses the 6S model. The performances of both methods are compared using 18 images from of a SPOT 5 time series acquired over Reunion Island. Results obtained for a set of manually selected invariant targets show excellent agreement between the two methods in all spectral bands: values of the coefficient of determination (r2 exceed 0.960, and bias magnitude values are less than 2.65. There is also a strong correlation between normalized NDVI values of sugarcane fields (r2 = 0.959). Despite a relative error of 12.66% between values, very comparable NDVI patterns are observed.

  17. The BUME method: a new rapid and simple chloroform-free method for total lipid extraction of animal tissue

    NASA Astrophysics Data System (ADS)

    Löfgren, Lars; Forsberg, Gun-Britt; Ståhlman, Marcus

    2016-06-01

    In this study we present a simple and rapid method for tissue lipid extraction. Snap-frozen tissue (15–150 mg) is collected in 2 ml homogenization tubes. 500 μl BUME mixture (butanol:methanol [3:1]) is added and automated homogenization of up to 24 frozen samples at a time in less than 60 seconds is performed, followed by a 5-minute single-phase extraction. After the addition of 500 μl heptane:ethyl acetate (3:1) and 500 μl 1% acetic acid a 5-minute two-phase extraction is performed. Lipids are recovered from the upper phase by automated liquid handling using a standard 96-tip robot. A second two-phase extraction is performed using 500 μl heptane:ethyl acetate (3:1). Validation of the method showed that the extraction recoveries for the investigated lipids, which included sterols, glycerolipids, glycerophospholipids and sphingolipids were similar or better than for the Folch method. We also applied the method for lipid extraction of liver and heart and compared the lipid species profiles with profiles generated after Folch and MTBE extraction. We conclude that the BUME method is superior to the Folch method in terms of simplicity, through-put, automation, solvent consumption, economy, health and environment yet delivering lipid recoveries fully comparable to or better than the Folch method.

  18. The BUME method: a new rapid and simple chloroform-free method for total lipid extraction of animal tissue

    PubMed Central

    Löfgren, Lars; Forsberg, Gun-Britt; Ståhlman, Marcus

    2016-01-01

    In this study we present a simple and rapid method for tissue lipid extraction. Snap-frozen tissue (15–150 mg) is collected in 2 ml homogenization tubes. 500 μl BUME mixture (butanol:methanol [3:1]) is added and automated homogenization of up to 24 frozen samples at a time in less than 60 seconds is performed, followed by a 5-minute single-phase extraction. After the addition of 500 μl heptane:ethyl acetate (3:1) and 500 μl 1% acetic acid a 5-minute two-phase extraction is performed. Lipids are recovered from the upper phase by automated liquid handling using a standard 96-tip robot. A second two-phase extraction is performed using 500 μl heptane:ethyl acetate (3:1). Validation of the method showed that the extraction recoveries for the investigated lipids, which included sterols, glycerolipids, glycerophospholipids and sphingolipids were similar or better than for the Folch method. We also applied the method for lipid extraction of liver and heart and compared the lipid species profiles with profiles generated after Folch and MTBE extraction. We conclude that the BUME method is superior to the Folch method in terms of simplicity, through-put, automation, solvent consumption, economy, health and environment yet delivering lipid recoveries fully comparable to or better than the Folch method. PMID:27282822

  19. The BUME method: a new rapid and simple chloroform-free method for total lipid extraction of animal tissue

    NASA Astrophysics Data System (ADS)

    Löfgren, Lars; Forsberg, Gun-Britt; Ståhlman, Marcus

    2016-06-01

    In this study we present a simple and rapid method for tissue lipid extraction. Snap-frozen tissue (15-150 mg) is collected in 2 ml homogenization tubes. 500 μl BUME mixture (butanol:methanol [3:1]) is added and automated homogenization of up to 24 frozen samples at a time in less than 60 seconds is performed, followed by a 5-minute single-phase extraction. After the addition of 500 μl heptane:ethyl acetate (3:1) and 500 μl 1% acetic acid a 5-minute two-phase extraction is performed. Lipids are recovered from the upper phase by automated liquid handling using a standard 96-tip robot. A second two-phase extraction is performed using 500 μl heptane:ethyl acetate (3:1). Validation of the method showed that the extraction recoveries for the investigated lipids, which included sterols, glycerolipids, glycerophospholipids and sphingolipids were similar or better than for the Folch method. We also applied the method for lipid extraction of liver and heart and compared the lipid species profiles with profiles generated after Folch and MTBE extraction. We conclude that the BUME method is superior to the Folch method in terms of simplicity, through-put, automation, solvent consumption, economy, health and environment yet delivering lipid recoveries fully comparable to or better than the Folch method.

  20. PHASS99: A software program for retrieving and decoding the radiometric ages of igneous rocks from the international database IGBADAT

    NASA Astrophysics Data System (ADS)

    Al-Mishwat, Ali T.

    2016-05-01

    PHASS99 is a FORTRAN program designed to retrieve and decode radiometric and other physical age information of igneous rocks contained in the international database IGBADAT (Igneous Base Data File). In the database, ages are stored in a proprietary format using mnemonic representations. The program can handle up to 99 ages in an igneous rock specimen and caters to forty radiometric age systems. The radiometric age alphanumeric strings assigned to each specimen description in the database consist of four components: the numeric age and its exponential modifier, a four-character mnemonic method identification, a two-character mnemonic name of analysed material, and the reference number in the rock group bibliography vector. For each specimen, the program searches for radiometric age strings, extracts them, parses them, decodes the different age components, and converts them to high-level English equivalents. IGBADAT and similarly-structured files are used for input. The output includes three files: a flat raw ASCII text file containing retrieved radiometric age information, a generic spreadsheet-compatible file for data import to spreadsheets, and an error file. PHASS99 builds on the old program TSTPHA (Test Physical Age) decoder program and expands greatly its capabilities. PHASS99 is simple, user friendly, fast, efficient, and does not require users to have knowledge of programing.

  1. A Rapid Method for Determining the Concentration of Recombinant Protein Secreted from Pichia pastoris

    NASA Astrophysics Data System (ADS)

    Sun, L. W.; Zhao, Y.; Niu, L. P.; Jiang, R.; Song, Y.; Feng, H.; feng, K.; Qi, C.

    2011-02-01

    Pichia secretive expression system is one of powerful eukaryotic expression systems in genetic engineering, which is especially suitable for industrial utilization. Because of the low concentration of the target protein in initial experiment, the methods and conditions for expression of the target protein should be optimized according to the protein yield repetitively. It is necessary to set up a rapid, simple and convenient analysis method for protein expression levels instead of the generally used method such as ultrafiltration, purification, dialysis, lyophilization and so on. In this paper, acetone precipitation method was chosen to concentrate the recombinant protein firstly after comparing with four different protein precipitation methods systematically, and then the protein was analyzed by SDS-Polyacrylamide Gel Electrophoresis. The recombinant protein was determined with the feature of protein band by the Automated Image Capture and 1-D Analysis Software directly. With this method, the optimized expression conditions of basic fibroblast growth factor secreted from pichia were obtained, which is as the same as using traditional methods. Hence, a convenient tool to determine the optimized conditions for the expression of recombinant proteins in Pichia was established.

  2. Rapid determination of fluoroquinolone residues in honey by a microbiological screening method and liquid chromatography.

    PubMed

    Kanda, Maki; Kusano, Tomoto; Kanai, Setsuko; Hayashi, Hiroshi; Matushima, Yoko; Nakajima, Takayuki; Takeba, Kazue; Sasamoto, Takeo; Nagayma, Toshijiro

    2010-01-01

    A rapid and efficient method was developed for the simultaneous determination of seven fluoroquinolone (FQ) residues: norfloxacin, ciprofloxacin, danofloxacin, enrofloxacin, orbifloxacin, sarafloxacin, and difloxacin in honey. The samples were first screened with a microbiological method by using test plates made from metal-free purified agar seeded with Bacillus subtilis BGA. When a sample was found to contain FQ residues by using the microbiological method, it was analyzed by LC with fluorescence detection (LC/FL). FQs were extracted with Na2EDTA-McIlvaine buffer and purified by a dual SPE method in which a cation-exchange cartridge was connected to an anion-exchange cartridge. The overall recoveries of the seven FQs ranged from 70.0 to 92.1%. The intra-assay and interassay CVs were < or = 7.8 and < or = 5.1%, respectively. For the microbiological method, the LOD values ranged from 2 to 9 microg/kg. For LC/FL, the LOQ values ranged from 2 to 7 microg/kg. The developed method was used to analyze 70 honey samples. In 14 samples in which the microbiological method detected the presence of FQ residues, norfloxacin, ciprofloxacin, and enrofloxacin were identified by LC/FL.

  3. A rapid cleanup method for the isolation and concentration of pyrrolizidine alkaloids in comfrey root.

    PubMed

    Gray, Dean E; Porter, Andrew; O'Neill, Terry; Harris, Roger K; Rottinghaus, George E

    2004-01-01

    Preparations from comfrey (Symphytum officinale and S. x uplandicum) root and leaf contain varying levels of the hepatotoxic pyrrolizidine alkaloids (PAs). Reference compounds for comfrey are not commercially available, and there is currently no rapid extraction or analytical method capable of determining low levels in raw materials or as adulterants in commercially available extracts. A solid-phase extraction (SPE) method was developed using an Ergosil cleanup column that specifically binds the PAs. With this method, powdered comfrey root was extracted by sonication and shaking with basic chloroform. The extract was applied to the cleanup column under vacuum, washed with 2 mL acetone-chloroform (8 + 2, v/v) followed by 2 mL petroleum ether to remove excess chloroform. The column was dried under vacuum, and the PAs were eluted with 2 successive 1 mL aliquots methanol. Percent recoveries of the PAs following Ergosil SPE had an overall average of 96.8%, with RSD of 3.8% over a range of 1.0 to 25.0 g extracted in 100 mL. Average precision of the method (n = 3 over 4 extraction concentrations) gave an overall RSD of 6.0% for the 5 alkaloids, with a range of 0.8% (5 g in 100 mL) to 11.2% (25 g in 100 mL). Recovery optimization testing showed that 1.0 g comfrey root extracted in 100 mL yielded the greatest recovery (% dry weight) of the PAs, with an extraction efficiency and accuracy of 94.2%, and RSD of 1.7% (n = 9). The unique properties of the Ergosil cleanup column provide rapid sample cleanup, volume reduction, and concentration of PAs from comfrey extracts, and allow the eluant to be analyzed directly by traditional chromatographic methods. PMID:15493660

  4. Improved method for rapid detection of phthalates in bottled water by gas chromatography-mass spectrometry.

    PubMed

    Otero, Paz; Saha, Sushanta Kumar; Moane, Siobhan; Barron, John; Clancy, Gerard; Murray, Patrick

    2015-08-01

    An improved gas chromatography-mass spectrometry (GC-MS) method for simple, rapid and precise quantification of phthalates in drinking water is presented. This method was validated for bis (2-n-butoxyethyl) phthalate (DBEP), bis (2-n-ethylhexyl) phthalate (DEHP), butyl benzyl phthalate (BBP), di-butyl phthalate (DBP), diethyl phthalate (DEP), dihexyl phthalate (DHP), dimethyl phthalate (DMP), di-n-octyl phthalate (DNOP) and dinonyl phthalate (DINP). Linearity of 0.9984>r(2)>0.9975 in the range of 0.075-4.8μg/mL for the selected phthalates was obtained. Accuracy values were in the range of 93-114% and RSD% for the analysis of 1.2μg/mL of each phthalate was below 2.3% (n=9). This new method design has significantly improved the detection in terms of rapidity, specificity, repeatability and accuracy compared to available methods. The procedure has been applied to the analyses of three different brands of commercially available bottled mineral water and the corresponding plastic bottles. Phthalates were extracted with dichloromethane and re-constituted in cyclohexane prior to GC-MS analysis. When the validated GC-MS method was applied to the quantification of the selected phthalates in the samples, only DBP (up to 0.0675±0.0018μg/mL) and DEHP (up to 1.6848±0.1631μg/mL) were found. Furthermore, we provide specific data about the concentration of DBP and DEHP in bottled water attributable to migration of phthalates from respective plastic bottles.

  5. Determining the relative sensitivity of benthic diatoms to atrazine using rapid toxicity testing: a novel method.

    PubMed

    Wood, Rebecca J; Mitrovic, Simon M; Kefford, Ben J

    2014-07-01

    Herbicides pose a potential threat to aquatic ecosystems, especially to phototrophic organisms such as benthic diatoms. Benthic diatoms may be a valuable indicator of the toxic impacts of herbicides in aquatic systems. However, this requires information on the herbicide sensitivity of a wide range of freshwater benthic diatom taxa. Unfortunately this information is only available for a limited number of species as current methods of developing new algae toxicity tests on individual taxa are lengthy and costly. To address this issue, we developed a new rapid toxicity test method to test natural benthic communities, from which the relative herbicide sensitivity of many individual taxa can be derived. This involved the collection of natural benthic communities from rocks in situ, which were placed directly into laboratory toxicity tests. Sensitivity data for several diatom genera in a 48 hour exposure toxicity test were produced, without the need for cultures or multiple site visits. After exposure to the highest treatment of atrazine (500 μg L(-1)) there were significant declines of healthy cells in the most sensitive genera: Gomphonema declined by 74%, Amphora by 62%, Cymbella by 54% and Ulnaria by 34% compared to control levels. In contrast, the genera, Eunotia, Achnanthidium and Navicula, had no statistically significant decline in cell health. This method can identify the diatom taxa most at risk of herbicide toxicity within the natural benthic diatom community. The rapid toxicity testing method presented is a simple and effective method to obtain sensitivity data for multiple taxa within a natural benthic diatom community in a relatively short period of time.

  6. Improved method for rapid detection of phthalates in bottled water by gas chromatography-mass spectrometry.

    PubMed

    Otero, Paz; Saha, Sushanta Kumar; Moane, Siobhan; Barron, John; Clancy, Gerard; Murray, Patrick

    2015-08-01

    An improved gas chromatography-mass spectrometry (GC-MS) method for simple, rapid and precise quantification of phthalates in drinking water is presented. This method was validated for bis (2-n-butoxyethyl) phthalate (DBEP), bis (2-n-ethylhexyl) phthalate (DEHP), butyl benzyl phthalate (BBP), di-butyl phthalate (DBP), diethyl phthalate (DEP), dihexyl phthalate (DHP), dimethyl phthalate (DMP), di-n-octyl phthalate (DNOP) and dinonyl phthalate (DINP). Linearity of 0.9984>r(2)>0.9975 in the range of 0.075-4.8μg/mL for the selected phthalates was obtained. Accuracy values were in the range of 93-114% and RSD% for the analysis of 1.2μg/mL of each phthalate was below 2.3% (n=9). This new method design has significantly improved the detection in terms of rapidity, specificity, repeatability and accuracy compared to available methods. The procedure has been applied to the analyses of three different brands of commercially available bottled mineral water and the corresponding plastic bottles. Phthalates were extracted with dichloromethane and re-constituted in cyclohexane prior to GC-MS analysis. When the validated GC-MS method was applied to the quantification of the selected phthalates in the samples, only DBP (up to 0.0675±0.0018μg/mL) and DEHP (up to 1.6848±0.1631μg/mL) were found. Furthermore, we provide specific data about the concentration of DBP and DEHP in bottled water attributable to migration of phthalates from respective plastic bottles. PMID:26134297

  7. Airborne Visible/Infrared Imaging Spectrometer (AVIRIS): Inflight radiometric calibration and the determination of surface reflectance

    NASA Technical Reports Server (NTRS)

    Conel, J. E.; Vane, G.; Green, R. O.; Alley, R. E.; Carere, V.; Gabell, A.; Bruegge, C. J.

    1988-01-01

    The inflight radiometric performance of AVIRIS is presented together with a comparison of methods of recovering surface spectral reflectance from the data. Performance is evaluated by comparing radiance predicted from AVIRIS with radiance generated from the LOWIRAN 6 atmospheric model and measured surface reflectance. Comparisons show apparent agreement to within a few percent between 1800 and 2450 nm. Between 600 and 1800 nm the response of AVIRIS is systematically low by as much as 70 percent, and between 400 and 600 nm it is higher than expected. These problems are traced to thermal distortions of the instrument, and to detachment during flight of optical fibers connecting foreoptics to two of four spectrometers in the instrument. Of three methods studied, an empirical one involving calibration curves constructed from field reflectance measurements returns accurate predictions of the surface reflectance independent of the actual radiometric significance of the flight data.

  8. Rapid, simple and efficient method for detection of viral genomes on raspberries.

    PubMed

    Perrin, A; Loutreul, J; Boudaud, N; Bertrand, I; Gantzer, C

    2015-11-01

    In recent years, foodborne viruses, especially human noroviruses (NoV) and hepatitis A virus (HAV), have been increasingly reported as the causes of foodborne disease outbreaks. Soft red fruits, especially raspberries, have a high incidence among the types of food concerned. Due to low infectious doses and low concentrations of enteric viruses in food samples, it is necessary to have an efficient and rapid detection method to implement prevention measures. A standard method for virus detection and quantification in food, including raspberries (XP CEN ISO/TS 15216-1 and -2, 2013) is currently available. This method proposes a consensus detection approach by RT-real time PCR (RT-qPCR) but also a virus extraction procedure based on the elution-concentration principle. In this study, an alternative method of extraction in which RNAs are directly extracted from food matrices (based on direct RNA extraction) has been optimized. First, each step was improved to make it a highly rapid, specific and simple method. Second, the standard virus concentration method was compared with the optimized direct RNA extraction one. Human enteric viral surrogates, Murine Norovirus (MNV) and F-specific RNA bacteriophage GA, were selected according to their adhesion properties and resistance to pH close to our main targets (NoV and HAV). Raspberries were artificially contaminated using two different techniques (immersion and spotting) in order to define a recovery rate and the amounts of virus recovered. Results showed that the direct RNA extraction method revealed significantly higher viral extraction efficiency (46.2%) than the elution-concentration method (20.3%), with similar proportions of inhibitors for both. In the same way with inoculation by spotting, the best recovery rate of GA phage (39.7% against 0.7%) and MNV (42.8% against 0.5%) was observed by direct RNA extraction. For the lowest concentrations of phage and virus in the immersion bath, only the direct RNA extraction method

  9. Development of a real-time PCR method for rapid sexing of human preimplantation embryos.

    PubMed

    Martinhago, Cd; Vagnini, Ld; Petersen, Cg; Mauri, Al; Baruffi, Rl; de Oliveira, Rm; Franco, Jg

    2010-01-01

    Genes on the X chromosome are known to be responsible for more than 200 hereditary diseases. After IVF, the simple selection of embryo sex before uterine transfer can prevent the occurrence of affected offspring among couples at risk for these genetic disorders. The aim of this investigation was to develop a rapid method of preimplantation genetic diagnosis (PGD) using real-time polymerase chain reaction (PCR) for the sexing of human embryos, and to compare it to the fluorescence in-situ hybridization technique, considered to be the gold standard. After biopsies were obtained from 40 surplus non-viable embryos for transfer, a total of 98 blastomeres were analysed. It was possible to analyse 24 embryos (60%) by both techniques, generating a total of 70 blastomeres (35 per technique), while 28 blastomeres from 16 embryos (40%) were analysed only by real-time PCR. A rapid and safe method was developed in the present study for the sexual diagnosis of a single human cell (blastomere and buccal cell) using the emerging technology of real-time PCR.

  10. A real-time PCR method to rapidly titer adenovirus stocks.

    PubMed

    Thomas, Maria A; Lichtenstein, Drew L; Krajcsi, Peter; Wold, William S M

    2007-01-01

    A critical step in working with adenovirus (Ad) and its vectors is the accurate, reproducible, sensitive, and rapid measurement of the amount of virus present in a stock. Titration methods fall into one of two categories: determination of either the infectious or the particle (infectious plus noninfectious) titer. Determining the infectious titer of a virus stock by plaque assay has important limitations, including cell line-, researcher-, and laboratory-dependent variation in titer, and the length of time required to perform the assay (2-4 wk). A major drawback of particle titration methods is the lack of consistent correlation between the resultant titer and the infectious titer. To overcome these problems, a rapid, sensitive, and reproducible real-time polymerase chain reaction (PCR) assay was developed that detects encapsidated full-length genomes. Importantly, there is a linear correlation between the titer determined by the realtime PCR assay and the infectious titer determined by a plaque assay. This chapter provides step-by-step guidance for preparing viral DNA, conducting the real-time PCR assay, and using the resultant data to calculate a viral titer.

  11. Development and validation of a rapid analytical method to quantify naled residue.

    PubMed

    Zhong, H; Latham, M

    2001-12-01

    A rapid gas chromatographic method for detecting residues of the thio-organophosphate naled was developed and subsequently validated in laboratory and field studies. More than 90% of naled was recovered by a gas chromatograph when equipped with a DB-5 capillary column and a thermionic specific detector. The limit of detection was 0.01 microg/ml with direct injection. Stabilization of naled under a variety of storage conditions also was examined. Analysis of field data showed that naled broke down rapidly in the environment but was stable when stored in hexane solvent at 4 degrees C and 23 degrees C for at least 7 days. Range of percentage matrix spike recovery was 31-49% for filter paper samples exposed under field conditions for 14 h. A field study was also initiated that collected naled droplets trapped on 6.7-m acrylic mohair-look yarn strands in addition to residue on filter paper after aerial ultra-low-volume mosquito adulticide application. Spike recovery was 79% for filter paper samples and 93% for yarn samples. Average naled residue concentrations with these methods were 373 microg/m2 and 11.28-73.77 microg/yarn, respectively. PMID:11804458

  12. A rapid method to characterize seabed habitats and associated macro-organisms

    USGS Publications Warehouse

    Anderson, T.J.; Cochrane, G.R.; Roberts, D.A.; Chezar, H.; Hatcher, G.; ,

    2007-01-01

    This study presents a method for rapidly collecting, processing, and interrogating real-time abiotic and biotic seabed data to determine seabed habitat classifications. This is done from data collected over a large area of an acoustically derived seabed map, along multidirectional transects, using a towed small camera-sled. The seabed, within the newly designated Point Harris Marine Reserve on the northern coast of San Miguel Island, California, was acoustically imaged using sidescan sonar then ground-truthed using a towed small camera-sled. Seabed characterizations were made from video observations, and were logged to a laptop computer (PC) in real time. To ground-truth the acoustic mosaic, and to characterize abiotic and biotic aspects of the seabed, a three-tiered characterization scheme was employed that described the substratum type, physical structure (i.e., bedform or vertical relief), and the occurrence of benthic macrofauna and flora. A crucial advantage of the method described here, is that preliminary seabed characterizations can be interrogated and mapped over the sidescan mosaic and other seabed information within hours of data collection. This ability to rapidly process seabed data is invaluable to scientists and managers, particularly in modifying concurrent or planning subsequent surveys.

  13. A breast cancer cell microarray (CMA) as a rapid method to characterize candidate biomarkers.

    PubMed

    Wu, Xinyan; Zahari, Muhammad S; Renuse, Santosh; Jacob, Harrys K C; Sakamuri, Sruthi; Singal, Mukul; Gabrielson, Edward; Sukumar, Saraswati; Pandey, Akhilesh

    2014-01-01

    Tissue microarrays (TMAs) have become an invaluable tool in cancer research to evaluate expression and subcellular localization of proteins in cells and tissues. As the catalogs of candidate biomarkers and therapeutic targets become more extensive, there is a need to characterize and validate these targets and biomarkers in cell lines as a primary biological system in research laboratories. Thus, cell microarrays (CMAs) are useful as a high-throughput screening tool. Here, we constructed a CMA containing 32 publicly available immortalized breast cell lines with the goal of creating a method to rapidly screen for antigens of interest in breast cancer research in a relatively easy, rapid and cost-effective manner. As proof of concept, we performed immunocytochemical staining of the HER2 receptor, as the status of this protein is relevant to breast cancer and has previously been reported for these cell lines. We observed a complete concordance of our staining with the published status of HER2 in these cell lines. In addition, we examined the expression of CD44, epithelial markers EpCAM and E-cadherin and tyrosine phosphoproteins. The labeling of these proteins correlates with the known biology of the cell lines. Our results demonstrate the utility of our method to screen for potential biomarkers and therapeutic targets in breast cancer and we suggest that CMAs be used as a general approach in breast cancer research.

  14. A breast cancer cell microarray (CMA) as a rapid method to characterize candidate biomarkers

    PubMed Central

    Wu, Xinyan; Zahari, Muhammad S; Renuse, Santosh; Jacob, Harrys KC; Sakamuri, Sruthi; Singal, Mukul; Gabrielson, Edward; Sukumar, Saraswati; Pandey, Akhilesh

    2014-01-01

    Tissue microarrays (TMAs) have become an invaluable tool in cancer research to evaluate expression and subcellular localization of proteins in cells and tissues. As the catalogs of candidate biomarkers and therapeutic targets become more extensive, there is a need to characterize and validate these targets and biomarkers in cell lines as a primary biological system in research laboratories. Thus, cell microarrays (CMAs) are useful as a high-throughput screening tool. Here, we constructed a CMA containing 32 publicly available immortalized breast cell lines with the goal of creating a method to rapidly screen for antigens of interest in breast cancer research in a relatively easy, rapid and cost-effective manner. As proof of concept, we performed immunocytochemical staining of the HER2 receptor, as the status of this protein is relevant to breast cancer and has previously been reported for these cell lines. We observed a complete concordance of our staining with the published status of HER2 in these cell lines. In addition, we examined the expression of CD44, epithelial markers EpCAM and E-cadherin and tyrosine phosphoproteins. The labeling of these proteins correlates with the known biology of the cell lines. Our results demonstrate the utility of our method to screen for potential biomarkers and therapeutic targets in breast cancer and we suggest that CMAs be used as a general approach in breast cancer research. PMID:25535895

  15. Rapid fabrication method of a microneedle mold with controllable needle height and width.

    PubMed

    Lin, Yen-Heng; Lee, I-Chi; Hsu, Wei-Chieh; Hsu, Ching-Hong; Chang, Kai-Ping; Gao, Shao-Syuan

    2016-10-01

    The main issue of transdermal drug delivery is that macromolecular drugs cannot diffuse through the stratum corneum of skin. Many studies have pursued micro-sized needles encapsulated with drugs to overcome this problem, as these needles can pierce the stratum corneum and allow drugs to enter the circulatory system of the human body. However, most microneedle fabrication processes are time-consuming and require expensive equipment. In this study, we demonstrate a rapid method for fabricating a microneedle mold using drawing lithography and a UV-cured resin. The mold was filled with a water-soluble material, polyvinylpyrrolidone (PVP), which was then demolded to produce a water-soluble microneedle array. The results of an in vitro skin insertion test using PVP microneedles and pig ear skin demonstrated the feasibility of the microneedle mold. In addition, by controlling the viscosity of the UV-cured resin through various heat treatments, microneedles with different heights and aspect ratios were produced. Compared with other methods, this technology significantly simplifies and accelerates the mold fabrication process. In addition, the required equipment is relatively simple and inexpensive. Through this technology, we can rapidly fabricate microneedle molds with controllable dimensions for various applications. PMID:27565822

  16. Rapid Analysis of Glibenclamide Using an Environmentally Benign Stability-Indicating RP-HPLC Method

    PubMed Central

    Haq, Nazrul; Alanazi, Fars Kaed; Alsarra, Ibrahim Abdullah; Shakeel, Faiyaz

    2014-01-01

    An environmentally benign RP-HPLC approach for rapid analysis of glibenclamide in pure form, developed nanoemulsion and commercial tablets was developed and validated in present investigation. The green chromatographic identification was performed on Lichrosphere 250 X 4.0 mm RP C8 column having a 5 μm packing as a stationary phase using a combination of ethanol: methanol (50:50 % v/v) as a mobile phase, at a flow rate of 1.0 mL/min with UV detection at 245 nm. The proposed method was validated for linearity, selectivity, accuracy, precision, robustness, sensitivity and specificity as per international conference on harmonization (ICH) guidelines. The utility of proposed method was verified by assay of glibenclamide in developed nanoemulsion and commercial tablets. The proposed method was found to be satisfactory in terms of selectivity, precision, accuracy, robustness, sensitivity and specificity. The content of glibenclamide in developed nanoemulsion and commercial tablets was found to be 100.50 % and 99.15 % respectively. The proposed method successfully resoled glibenclamide peak in the presence of its all type of degradation products which indicated stability-indicating property of the proposed method. These results indicated that the green chromatographic method could be successfully employed for routine analysis of glibenclamide in pure drug and various commercial formulations. PMID:25276186

  17. Developing the RIAM method (rapid impact assessment matrix) in the context of impact significance assessment

    SciTech Connect

    Ijaes, Asko; Kuitunen, Markku T.; Jalava, Kimmo

    2010-02-15

    In this paper the applicability of the RIAM method (rapid impact assessment matrix) is evaluated in the context of impact significance assessment. The methodological issues considered in the study are: 1) to test the possibilities of enlarging the scoring system used in the method, and 2) to compare the significance classifications of RIAM and unaided decision-making to estimate the consistency between these methods. The data used consisted of projects for which funding had been applied for via the European Union's Regional Development Trust in the area of Central Finland. Cases were evaluated with respect to their environmental, social and economic impacts using an assessment panel. The results showed the scoring framework used in RIAM could be modified according to the problem situation at hand, which enhances its application potential. However the changes made in criteria B did not significantly affect the final ratings of the method, which indicates the high importance of criteria A1 (importance) and A2 (magnitude) to the overall results. The significance classes obtained by the two methods diverged notably. In general the ratings given by RIAM tended to be smaller compared to intuitive judgement implying that the RIAM method may be somewhat conservative in character.

  18. Rapid Molecular Detection Methods for Arboviruses of Livestock of Importance to Northern Europe

    PubMed Central

    Johnson, Nicholas; Voller, Katja; Phipps, L. Paul; Mansfield, Karen; Fooks, Anthony R.

    2012-01-01

    Arthropod-borne viruses (arboviruses) have been responsible for some of the most explosive epidemics of emerging infectious diseases over the past decade. Their impact on both human and livestock populations has been dramatic. The early detection either through surveillance or diagnosis of virus will be a critical feature in responding and resolving the emergence of such epidemics in the future. Although some of the most important emerging arboviruses are human pathogens, this paper aims to highlight those diseases that primarily affect livestock, although many are zoonotic and some occasionally cause human mortality. This paper also highlights the molecular detection methods specific to each virus and identifies those emerging diseases for which a rapid detection methods are not yet developed. PMID:22219660

  19. A rapid method for isolation of piperine from the fruits of Piper nigrum Linn.

    PubMed

    Kanaki, Niranjan; Dave, Mansi; Padh, Harish; Rajani, Mandapati

    2008-07-01

    A simple, rapid and efficient method has been developed for the isolation of piperine from the fruits of Piper nigrum. The method involves extraction of the fruit powder with glacial acetic acid, from which piperine is partitioned into chloroform and subsequently crystallized. The identity of the compound was confirmed by its melting point, comparison of UV, IR, and mass spectral data with those from a reference standard, and co-chromatography with the reference standard using thin-layer chromatography (TLC). The purity of the compound was ascertained by TLC, by recording UV absorption spectra at the start, middle, and end positions of the spot on the plate, and by differential scanning calorimetry (DSC).

  20. Cellulose acetate fibers prepared from different raw materials with rapid synthesis method.

    PubMed

    Chen, Jinghuan; Xu, Jikun; Wang, Kun; Cao, Xuefei; Sun, Runcang

    2016-02-10

    Transesterification is a mild process to prepare cellulose acetate (CA) as compared with the traditional method. In this study, CA fibers were produced from six cellulose raw materials based on a simple and rapid transesterification method. The properties of the CA solutions and the obtained CA fibers were investigated in detail. Results showed that all of the cellulose raw materials were esterified within 15 min, and spinning dopes could be obtained by concentrating the CA solutions via vacuum distillation. The XRD, FT-IR, (1)H, (13)C and HSQC NMR analysis confirmed the successful synthesis of CA. The degree of substitution (DS) of the obtained CA was significantly affected by the degree of polymerization (DP) of cellulose raw materials, which further influenced the viscosity of CA solutions as well as the structural, thermal and mechanical properties of the CA fibers. PMID:26686180

  1. A rapid and simple method to draw polyethylene nanofibers with enhanced thermal conductivity

    NASA Astrophysics Data System (ADS)

    Ma, Jian; Zhang, Qian; Zhang, Yin; Zhou, Lei; Yang, Juekuan; Ni, Zhonghua

    2016-07-01

    We report on a rapid and simple method to fabricate polyethylene (PE) nanofibers by one-step drawing from PE solution. The diameter of the fiber prepared with this method can be as small as 40 nm. The thermal conductivity of the drawn PE nanofiber was measured with suspended microdevices, and the highest value obtained is 8.8 W m-1 K-1, which is very close to that of electrospun PE nanofibers, and over 20 times higher than bulk value. Raman spectra of these drawn PE nanofibers indicate that molecular chains in these fibers can be as well aligned as that in electrospun fibers, which results in the enhanced thermal conductivity of the drawn PE nanofibers.

  2. Cellulose acetate fibers prepared from different raw materials with rapid synthesis method.

    PubMed

    Chen, Jinghuan; Xu, Jikun; Wang, Kun; Cao, Xuefei; Sun, Runcang

    2016-02-10

    Transesterification is a mild process to prepare cellulose acetate (CA) as compared with the traditional method. In this study, CA fibers were produced from six cellulose raw materials based on a simple and rapid transesterification method. The properties of the CA solutions and the obtained CA fibers were investigated in detail. Results showed that all of the cellulose raw materials were esterified within 15 min, and spinning dopes could be obtained by concentrating the CA solutions via vacuum distillation. The XRD, FT-IR, (1)H, (13)C and HSQC NMR analysis confirmed the successful synthesis of CA. The degree of substitution (DS) of the obtained CA was significantly affected by the degree of polymerization (DP) of cellulose raw materials, which further influenced the viscosity of CA solutions as well as the structural, thermal and mechanical properties of the CA fibers.

  3. Comparative analysis of two rapid, automated methods for determining aminoglycoside levels.

    PubMed Central

    Ngui-Yen, J H; Doyle, P W; Smith, J A

    1984-01-01

    Two rapid automated methods, the Syva EMIT Autolab 6000 (Syva Corp., Syntex Diagnostics, Ottawa, Ontario, Canada) and the Abbott TDX (Abbott Diagnostics, Mississauga, Ontario, Canada) systems, for determining amikacin, gentamicin and tobramycin levels in serum were evaluated for accuracy, reproducibility, and cost. Both methods had a high degree of accuracy and reproducibility in assaying gentamicin, amikacin, and tobramycin. The Abbott TDX required an average of only 1 min and 43 s for a single assay compared with 4 min and 15 s for the Syva EMIT automated system. Excluding the capital cost of equipment, the cost per assay by the Abbott TDX was +3.55 Canadian compared with +3.00 Canadian with the Syva EMIT automated system. Both systems performed well during this evaluation in a general diagnostic laboratory, but the Syva EMIT required more daily maintenance than the Abbott TDX system. PMID:6392328

  4. Radiometric Meteorology: radon progeny as tracers

    NASA Astrophysics Data System (ADS)

    Greenfield, Mark; Iwata, Atsushi; Ito, Nahoko; Kubo, Kenya; Komura, Kazu; Ishizaki, Miho

    2008-10-01

    In-situ measurement of atmospheric γ radiation from radon progeny determine rain and snow rates to better accuracy than standard rain gauges and gives a handle on how droplets are formed. The measured γ ray rates (GRR) have been shown to be proportional to a power of radiometric precipitation rates (RPR)^α, α giving a handle on the extent to which radon progeny are surface adsorbed or volume absorbed.ootnotetextM. B. Greenfield et al., J. Appl. Phys. 93, (2003) pp 5733-5741. More recently time dependent ratios of GRR from ^214Pb and ^214Bi, concentrated from collected rainwater, have been used to determine the elapsed time since activity from RPR, adhered to rain droplets, was removed from secular equilibrium. Ion exchange resins precipitate out the ^214Pb and ^214Bi ions, which are then filtered from 10s of liters of rainwater or snowmelt. A portable Ge detector is used to integrate the resulting activity over 5-10 min intervals. The measured evolution of these two activities from secular equilibrium to transient equilibrium has meteorological applications enabling both the determination of average elapsed times between the formation of raindrops and the time they reach the ground, as well as an estimate of the initial activity at the source of droplet formation.

  5. Calibrated infrared ground/air radiometric spectrometer

    NASA Astrophysics Data System (ADS)

    Silk, J. K.; Schildkraut, Elliot Robert; Bauldree, Russell S.; Goodrich, Shawn M.

    1996-06-01

    The calibrated infrared ground/air radiometric spectrometer (CIGARS) is a new high performance, multi-purpose, multi- platform Fourier transform spectrometer (FPS) sensor. It covers the waveband from 0.2 to 12 micrometer, has spectral resolution as fine as 0.3 cm-1, and records over 100 spectra per second. Two CIGARS units are being used for observations of target signatures in the air or on the ground from fixed or moving platforms, including high performance jet aircraft. In this paper we describe the characteristics and capabilities of the CIGARS sensor, which uses four interchangeable detector modules (Si, InGaAs, InSb, and HgCdTe) and two optics modules, with internal calibration. The data recording electronics support observations of transient events, even without precise information on the timing of the event. We present test and calibration data on the sensitivity, spectral resolution, stability, and spectral rate of CIGARS, and examples of in- flight observations of real targets. We also discuss plans for adapting CIGARS for imaging spectroscopy observations, with simultaneous spectral and spatial data, by replacing the existing detectors with a focal plane array (FPA).

  6. In-flight radiometric calibration of Landsat-5 Thematic Mapper from 1984 to the present

    NASA Astrophysics Data System (ADS)

    Thome, Kurtis J.; Gellman, David I.; Parada, Robert J., Jr.; Biggar, Stuart F.; Slater, Philip N.; Moran, M. Susan

    1993-11-01

    The reflectance-based method is used to determine an absolute radiometric calibration of Landsat-5 Thematic Mapper for the solar reflective portion of the spectrum. Results are given for data collected at White Sands Missile Range in New Mexico on 1992-08-15. These results are compared to those obtained from applying a similar processing approach to data collected in 1984, 1985, 1987, and 1988.

  7. Support technologies involved in the development and implementation of radiometric systems for sensor calibration, characterization, and HWIL testing at AEDC

    NASA Astrophysics Data System (ADS)

    Lowry, H. S.; Breeden, M. F.; Crider, D. H.; Steely, S. L.; Nicholson, R. A.; Labello, J. M.

    2009-05-01

    The characterization, calibration, and mission simulation testing of space-based, interceptor, and air-borne sensors require a continual involvement in the development and evaluation of radiometric projection technologies. Activities at Arnold Engineering Development Center (AEDC) include Hardware in the Loop (HWIL) testing with high-fidelity complex scene-projection technologies as well as improvements in the radiometric source-calibration systems. These technologies are integrated into a low cryo-vacuum (~20 K) environment. The latest scene simulation and HWIL projection technologies are being investigated that can produce desired target temperatures and target-to-sensor ranges such that sensor mission performance can be evaluated. These technologies include multiple-band source subsystems and special spectral-tailoring methods, as well as comprehensive analysis and optical properties measurements of the components involved. Emphasis areas include the development of methodologies to test wide field of view (WFOV), polarimetric, and multi/hyperspectral radiometric imaging systems.

  8. TS-AMIR: a topology string alignment method for intensive rapid protein structure comparison

    PubMed Central

    2012-01-01

    Background In structural biology, similarity analysis of protein structure is a crucial step in studying the relationship between proteins. Despite the considerable number of techniques that have been explored within the past two decades, the development of new alternative methods is still an active research area due to the need for high performance tools. Results In this paper, we present TS-AMIR, a Topology String Alignment Method for Intensive Rapid comparison of protein structures. The proposed method works in two stages: In the first stage, the method generates a topology string based on the geometric details of secondary structure elements, and then, utilizes an n-gram modelling technique over entropy concept to capture similarities in these strings. This initial correspondence map between secondary structure elements is submitted to the second stage in order to obtain the alignment at the residue level. Applying the Kabsch method, a heuristic step-by-step algorithm is adopted in the second stage to align the residues, resulting in an optimal rotation matrix and minimized RMSD. The performance of the method was assessed in different information retrieval tests and the results were compared with those of CE and TM-align, representing two geometrical tools, and YAKUSA, 3D-BLAST and SARST as three representatives of linear encoding schemes. It is shown that the method obtains a high running speed similar to that of the linear encoding schemes. In addition, the method runs about 800 and 7200 times faster than TM-align and CE respectively, while maintaining a competitive accuracy with TM-align and CE. Conclusions The experimental results demonstrate that linear encoding techniques are capable of reaching the same high degree of accuracy as that achieved by geometrical methods, while generally running hundreds of times faster than conventional programs. PMID:22336468

  9. Rapid detection of intestinal pathogens in fecal samples by an improved reverse dot blot method

    PubMed Central

    Xing, Jian-Ming; Zhang, Su; Du, Ying; Bi, Dan; Yao, Li-Hui

    2009-01-01

    AIM: To develop a new, rapid and accurate reverse dot blot (RDB) method for the detection of intestinal pathogens in fecal samples. METHODS: The 12 intestinal pathogens tested were Salmonella spp., Brucella spp., Escherichia coli O157:H7, Clostridium botulinum, Bacillus cereus, Clostridium perfringens, Vibrio parahaemolyticus, Shigella spp., Yersinia enterocolitica, Vibrio cholerae, Listeria monocytogenes and Staphylococcus aureus. The two universal primers were designed to amplify two variable regions of bacterial 16S and 23S rDNA genes from all of the 12 bacterial species tested. Five hundred and forty fecal samples from the diarrhea patients were detected using the improved RDB assay. RESULTS: The methods could identify the 12 intestinal pathogens specifically, and the detection limit was as low as 103 CFUs. The consistent detection rate of the improved RDB assay compared with the traditional culture method was up to 88.75%. CONCLUSION: The hybridization results indicated that the improved RDB assay developed was a reliable method for the detection of intestinal pathogen in fecal samples. PMID:19469006

  10. A Tree Based Method for the Rapid Screening of Chemical Fingerprints

    NASA Astrophysics Data System (ADS)

    Kristensen, Thomas G.; Nielsen, Jesper; Pedersen, Christian N. S.

    The fingerprint of a molecule is a bitstring based on its structure, constructed such that structurally similar molecules will have similar fingerprints. Molecular fingerprints can be used in an initial phase for identifying novel drug candidates by screening large databases for molecules with fingerprints similar to a query fingerprint. In this paper, we present a method which efficiently finds all fingerprints in a database with Tanimoto coefficient to the query fingerprint above a user defined threshold. The method is based on two novel data structures for rapid screening of large databases: the kD grid and the Multibit tree. The kD grid is based on splitting the fingerprints into k shorter bitstrings and utilising these to compute bounds on the similarity of the complete bitstrings. The Multibit tree uses hierarchical clustering and similarity within each cluster to compute similar bounds. We have implemented our method and tested it on a large data set from the industry. Our experiments show that our method yields a three-fold speed-up over previous methods.

  11. Determination of total body water by a simple and rapid mass spectrometric method.

    PubMed

    Van Kreel, B K; Van der Vegt, F; Meers, M; Wagenmakers, T; Westerterp, K; Coward, A

    1996-01-01

    A rapid and inexpensive method was developed to determine deuterium enrichment in body fluids. This is achieved by converting water into acetylene. To vacutainer tubes a small amount of calcium carbide is added. The tubes are evacuated and 25 microliters of sample are injected through the stopper. The reaction takes place spontaneously at room temperature in a few seconds. Enrichment at mass 27 compared with mass 26 can be determined by continuous flow isotope ratio mass spectrometry without any interference from the carrier gas helium. A series of D2O samples diluted with increasing amounts of H2O is prepared at the time of measurement of the biological samples and the measured ratios are used to calculate the isotope dilution of the unknown. The relative error of the method is 1.6% when a dose of 25 ml kg-1 is administered to the patient. The method was compared with two different methods in use in other laboratories, by a published method The means of the differences were -0.1 and 0.08 1, respectively, with standard deviations of 0.63 and 3.0.

  12. Method and apparatus for rapidly growing films on substrates using pulsed supersonic jets

    DOEpatents

    Eres, Diula; Lowndes, Douglas H.

    1992-01-01

    A method and apparatus for the rapid and economical deposition of uniform and high quality films upon a substrate for subsequent use in producing electronic devices, for example. The resultant films are either epitaxial (crystalline) or amorphous depending upon the incidence rate and the temperature and structure of the substrate. The deposition is carried out in a chamber maintained at about 10.sup.-6 Torr. A gaseous source of the material for forming the deposit is injected into the deposition chamber in the form of a pulsed supersonic jet so as to obtain a high incidence rate. The supersonic jet is produced by a pulsed valve between a relatively high presure reservoir, containing the source gaseous molecules, and the deposition chamber; the valve has a small nozzle orifice (e.g., 0.1-1.0 mm diameter). The type of deposit (crystalline amorphous) is then dependent upon the temperature and structure of the substrate. Very high deposition rates are achieved, and the deposit is very smooth and of uniform thickness. Typically the deposition rate is about 100 times that of much more expensive conventional molecular beam methods for deposition, and comparable to certain expensive plasma-assisted CVD methods of the art. The high growth rate of this method results in a reduced contamination of the deposit from other elements in the environment. The method is illustrated by the deposition of epitaxial and amorphour germanium films upon GaAs substrates.

  13. Rapid fusion method for the determination of Pu, Np, and Am in large soil samples

    DOE PAGES

    Maxwell, Sherrod L.; Culligan, Brian; Hutchison, Jay B.; McAlister, Daniel R.

    2015-02-14

    A new rapid sodium hydroxide fusion method for the preparation of 10-20 g soil samples has been developed by the Savannah River National Laboratory (SRNL). The method enables lower detection limits for plutonium, neptunium, and americium in environmental soil samples. The method also significantly reduces sample processing time and acid fume generation compared to traditional soil digestion techniques using hydrofluoric acid. Ten gram soil aliquots can be ashed and fused using the new method in 1-2 hours, completely dissolving samples, including refractory particles. Pu, Np and Am are separated using stacked 2mL cartridges of TEVA and DGA Resin and measuredmore » using alpha spectrometry. The method can be adapted for measurement by inductively-coupled plasma mass spectrometry (ICP-MS). Two 10 g soil aliquots of fused soil may be combined prior to chromatographic separations to further improve detection limits. Total sample preparation time, including chromatographic separations and alpha spectrometry source preparation, is less than 8 hours.« less

  14. Rapid fusion method for the determination of Pu, Np, and Am in large soil samples

    SciTech Connect

    Maxwell, Sherrod L.; Culligan, Brian; Hutchison, Jay B.; McAlister, Daniel R.

    2015-02-14

    A new rapid sodium hydroxide fusion method for the preparation of 10-20 g soil samples has been developed by the Savannah River National Laboratory (SRNL). The method enables lower detection limits for plutonium, neptunium, and americium in environmental soil samples. The method also significantly reduces sample processing time and acid fume generation compared to traditional soil digestion techniques using hydrofluoric acid. Ten gram soil aliquots can be ashed and fused using the new method in 1-2 hours, completely dissolving samples, including refractory particles. Pu, Np and Am are separated using stacked 2mL cartridges of TEVA and DGA Resin and measured using alpha spectrometry. The method can be adapted for measurement by inductively-coupled plasma mass spectrometry (ICP-MS). Two 10 g soil aliquots of fused soil may be combined prior to chromatographic separations to further improve detection limits. Total sample preparation time, including chromatographic separations and alpha spectrometry source preparation, is less than 8 hours.

  15. Pyroprinting: a rapid and flexible genotypic fingerprinting method for typing bacterial strains.

    PubMed

    Black, Michael W; VanderKelen, Jennifer; Montana, Aldrin; Dekhtyar, Alexander; Neal, Emily; Goodman, Anya; Kitts, Christopher L

    2014-10-01

    Bacterial strain typing is commonly employed in studies involving epidemiology, population ecology, and microbial source tracking to identify sources of fecal contamination. Methods for differentiating strains generally use either a collection of phenotypic traits or rely on some interrogation of the bacterial genotype. This report introduces pyroprinting, a novel genotypic strain typing method that is rapid, inexpensive, and discriminating compared to the most sensitive methods already in use. Pyroprinting relies on the simultaneous pyrosequencing of polymorphic multicopy loci, such as the intergenic transcribed spacer regions of rRNA operons in bacterial genomes. Data generated by sequencing combinations of variable templates are reproducible and intrinsically digitized. The theory and development of pyroprinting in Escherichia coli, including the selection of similarity thresholds to define matches between isolates, are presented. The pyroprint-based strain differentiation limits and phylogenetic relevance compared to other typing methods are also explored. Pyroprinting is unique in its simplicity and, paradoxically, in its intrinsic complexity. This new approach serves as an excellent alternative to more cumbersome or less phylogenetically relevant strain typing methods.

  16. Microwave-assisted protein staining: mass spectrometry compatible methods for rapid protein visualisation.

    PubMed

    Nesatyy, Victor J; Dacanay, Andrew; Kelly, John F; Ross, Neil W

    2002-01-01

    The effects of microwave irradiation on the staining of electrophoresed and electroblotted proteins have been assessed using currently available detection methods. Although the absorption of microwave radiation was found to be uneven, band intensity following microwave-assisted protein staining (MAPS) was comparable and in some cases exceeded the intensity of the bands visualised by the original staining methods. It was found that microwave treatment drastically reduced the duration of the staining protocols for visualisation of the proteins separated by both one- and two-dimensional electrophoresis. Application of MAPS methods did not affect peptide mass fingerprinting analysis by mass spectrometry and subsequent identification of the protein by database searching. The peptide mass maps corresponding to the proteins visualised using both the conventional and MAPS methods did not show significant difference in signal/noise ratio. Moreover, it appeared that microwave treatment of the gels resulted in the increased recovery of the peptides following in-gel trypsin digestion. Briefly, microwave-assisted protein staining methods were rapid, compatible with mass spectrometry and were equally effective on thin (0.75-mm) and thick (1.5-mm) gels (such as those used in 2D electrophoresis). PMID:11816041

  17. Designing an in-flight airborne calibration site using experience from vicarious radiometric satellite calibration

    NASA Astrophysics Data System (ADS)

    Livens, Stefan; Debruyn, Walter; Sterckx, Sindy; Reusen, Ils

    2011-11-01

    Laboratory calibration of electro-optical sensors is preferably complemented by regular in-flight verification. This checks whether the lab calibration parameters remain valid or recalibration is necessary. In-flight verification can be achieved by vicarious calibration using in-flight measurements of calibration targets. We intend to identify and design a set of suitable radiometric calibration targets. For this, we borrow from expertise gained with the PROBA-V satellite calibration system, which uses multiple vicarious methods relying on diverse natural on-ground targets. Besides reflectance based calibration using ground measurements, the PROBA-V calibration methods are unproven for use in airborne calibration. The selected targets should be suitable for the calibration of both multispectral and hyperspectral imagers. We start from general requirements for radiometric targets and investigate their applicability to airborne calibration. From this we identify two possible sets of natural calibration sites in Belgium. One set, located in the Campine region, contains small water bodies and sandy lakesides. Another set is located in the Westhoek region near the Belgian coast. It offers better suitable water bodies, as well as sandy areas, grass fields and dark targets. Airborne calibration lends itself to the use of smaller artifical targets. We propose to complement the natural targets with a portable target consisting of agricultural nets with different densities. The definition of sets of calibration targets, both natural and artificial can facilitate the investigation of the usability of vicarious targets and method for inflight radiometric verification.

  18. A Simple and Rapid Identification Method for Mycobacterium bovis BCG with Loop-Mediated Isothermal Amplification

    PubMed Central

    Kouzaki, Yuji; Maeda, Takuya; Sasaki, Hiroaki; Tamura, Shinsuke; Hamamoto, Takaaki; Yuki, Atsushi; Sato, Akinori; Miyahira, Yasushi; Kawana, Akihiko

    2015-01-01

    Bacillus Calmette-Guérin (BCG) is widely used as a live attenuated vaccine against Mycobacterium tuberculosis and is an agent for standard prophylaxis against the recurrence of bladder cancer. Unfortunately, it can cause severe infectious diseases, especially in immunocompromised patients, and the ability to immediately distinguish BCG from other M. tuberculosis complexes is therefore important. In this study, we developed a simple and easy-to-perform identification procedure using loop-mediated amplification (LAMP) to detect deletions within the region of difference, which is deleted specifically in all M. bovis BCG strains. Reactions were performed at 64°C for 30 min and successful targeted gene amplifications were detected by real-time turbidity using a turbidimeter and visual inspection of color change. The assay had an equivalent detection limit of 1.0 pg of genomic DNA using a turbidimeter whereas it was 10 pg with visual inspection, and it showed specificity against 49 strains of 44 pathogens, including M. tuberculosis complex. The expected LAMP products were confirmed through identical melting curves in real-time LAMP procedures. We employed the Procedure for Ultra Rapid Extraction (PURE) kit to isolate mycobacterial DNA and found that the highest sensitivity limit with a minimum total cell count of mycobacterium (including DNA purification with PURE) was up to 1 × 103 cells/reaction, based on color changes under natural light with FDA reagents. The detection limit of this procedure when applied to artificial serum, urine, cerebrospinal fluid, and bronchoalveolar lavage fluid samples was also about 1 × 103 cells/reaction. Therefore, this substitute method using conventional culture or clinical specimens followed by LAMP combined with PURE could be a powerful tool to enable the rapid identification of M. bovis BCG as point-of-care testing. It is suitable for practical use not only in resource-limited situations, but also in any clinical situation

  19. MATS; A novel, rapid method for the development of microsatellite markers from YACs

    SciTech Connect

    Chen, H.; Polido, J.; Duyk, G.M.

    1994-09-01

    The availability of high resolution genetic maps has enabled the rapid mapping of a large number of disease loci. In absence of good candidate genes, the eventual identification of the disease locus requires effective strategies for completing the positional cloning {open_quotes}end game{close_quotes}. An essential element of this exercise is the development of local high resolution genetic maps, enabling the precise localization of the minimal interval containing the targeted gene. In addition, one also requires an accurate clone map of this minimal interval. Currently, clone coverage can be obtained using YACs, but rapid development of new genetic markers or additional STSs for walking or confirmation of clone order is a tedious process. Here we describe the successful application of a novel, rapid and efficient procedure, based on subtractive hybridization and PCR amplification for generating microsatellite markers on non-polymorphic STSs directly from the YACs or other large insert cloning vectors. After a single round of subtraction, the target sequences (YAC) are amplified by PCR and cloned into plasmid vectors. Several key steps have been designed to achieve efficient subtractive hybridization and to obtain preferential amplification of the target sequences. These technical steps include the design of novel adapters, PCR primers, efficient development of small insert libraries and non-radioactive screening methods. For example, using a 600 kb YAC as a target, we developed 14 new microsatellite markers. These new markers greatly facilitated genetic localization of a disease locus and allowed the accurate ordering by STS content mapping of a cloned contig spanning the interval. In addition to the utility of this approach in positional cloning, this strategy may provide an approach for filling gaps in the emerging genetic maps.

  20. Reduction of Striping Noise in Overlapping LIDAR Intensity Data by Radiometric Normalization

    NASA Astrophysics Data System (ADS)

    Yan, Wai Yeung; Shaker, Ahmed

    2016-06-01

    To serve seamless mapping, airborne LiDAR data are usually collected with multiple parallel strips with one or two cross strip(s). Nevertheless, the overlapping regions of LiDAR data strips are usually found with unbalanced intensity values, resulting in the appearance of stripping noise. Despite that physical intensity correction methods are recently proposed, some of the system and environmental parameters are assumed as constant or not disclosed, leading to such an intensity discrepancy. This paper presents a new normalization technique to adjust the radiometric misalignment found in the overlapping LiDAR data strips. The normalization technique is built upon a second-order polynomial function fitted on the joint histogram plot, which is generated with a set of pairwise closest data points identified within the overlapping region. The method was tested on Teledyne Optech's Gemini dataset (at 1064 nm wavelength), where the LiDAR intensity data were first radiometrically corrected based on the radar (range) equation. Five land cover features were selected to evaluate the coefficient of variation (cv) of the intensity values before and after implementing the proposed method. Reduction of cv was found by 19% to 59% in the Gemini dataset, where the striping noise was significantly reduced in the radiometrically corrected and normalized intensity data. The Gemini dataset was also used to conduct land cover classification, and the overall accuracy yielded a notable improvement of 9% to 18%. As a result, LiDAR intensity data should be pre-processed with radiometric correction and normalization prior to any data manipulation.

  1. A Rapid and Improved Method to Generate Recombinant Dengue Virus Vaccine Candidates.

    PubMed

    Govindarajan, Dhanasekaran; Guan, Liming; Meschino, Steven; Fridman, Arthur; Bagchi, Ansu; Pak, Irene; ter Meulen, Jan; Casimiro, Danilo R; Bett, Andrew J

    2016-01-01

    Dengue is one of the most important mosquito-borne infections accounting for severe morbidity and mortality worldwide. Recently, the tetravalent chimeric live attenuated Dengue vaccine Dengvaxia® was approved for use in several dengue endemic countries. In general, live attenuated vaccines (LAV) are very efficacious and offer long-lasting immunity against virus-induced disease. Rationally designed LAVs can be generated through reverse genetics technology, a method of generating infectious recombinant viruses from full length cDNA contained in bacterial plasmids. In vitro transcribed (IVT) viral RNA from these infectious clones is transfected into susceptible cells to generate recombinant virus. However, the generation of full-length dengue virus cDNA clones can be difficult due to the genetic instability of viral sequences in bacterial plasmids. To circumvent the need for a single plasmid containing a full length cDNA, in vitro ligation of two or three cDNA fragments contained in separate plasmids can be used to generate a full-length dengue viral cDNA template. However, in vitro ligation of multiple fragments often yields low quality template for IVT reactions, resulting in inconsistent low yield RNA. These technical difficulties make recombinant virus recovery less efficient. In this study, we describe a simple, rapid and efficient method of using LONG-PCR to recover recombinant chimeric Yellow fever dengue (CYD) viruses as potential dengue vaccine candidates. Using this method, we were able to efficiently generate several viable recombinant viruses without introducing any artificial mutations into the viral genomes. We believe that the techniques reported here will enable rapid and efficient recovery of recombinant flaviviruses for evaluation as vaccine candidates and, be applicable to the recovery of other RNA viruses.

  2. A Rapid and Improved Method to Generate Recombinant Dengue Virus Vaccine Candidates

    PubMed Central

    Govindarajan, Dhanasekaran; Guan, Liming; Meschino, Steven; Fridman, Arthur; Bagchi, Ansu; Pak, Irene; ter Meulen, Jan; Casimiro, Danilo R.; Bett, Andrew J.

    2016-01-01

    Dengue is one of the most important mosquito-borne infections accounting for severe morbidity and mortality worldwide. Recently, the tetravalent chimeric live attenuated Dengue vaccine Dengvaxia® was approved for use in several dengue endemic countries. In general, live attenuated vaccines (LAV) are very efficacious and offer long-lasting immunity against virus-induced disease. Rationally designed LAVs can be generated through reverse genetics technology, a method of generating infectious recombinant viruses from full length cDNA contained in bacterial plasmids. In vitro transcribed (IVT) viral RNA from these infectious clones is transfected into susceptible cells to generate recombinant virus. However, the generation of full-length dengue virus cDNA clones can be difficult due to the genetic instability of viral sequences in bacterial plasmids. To circumvent the need for a single plasmid containing a full length cDNA, in vitro ligation of two or three cDNA fragments contained in separate plasmids can be used to generate a full-length dengue viral cDNA template. However, in vitro ligation of multiple fragments often yields low quality template for IVT reactions, resulting in inconsistent low yield RNA. These technical difficulties make recombinant virus recovery less efficient. In this study, we describe a simple, rapid and efficient method of using LONG-PCR to recover recombinant chimeric Yellow fever dengue (CYD) viruses as potential dengue vaccine candidates. Using this method, we were able to efficiently generate several viable recombinant viruses without introducing any artificial mutations into the viral genomes. We believe that the techniques reported here will enable rapid and efficient recovery of recombinant flaviviruses for evaluation as vaccine candidates and, be applicable to the recovery of other RNA viruses. PMID:27008550

  3. A rapid and automated relocation method of an AFM probe for high-resolution imaging

    NASA Astrophysics Data System (ADS)

    Zhou, Peilin; Yu, Haibo; Shi, Jialin; Jiao, Niandong; Wang, Zhidong; Wang, Yuechao; Liu, Lianqing

    2016-09-01

    The atomic force microscope (AFM) is one of the most powerful tools for high-resolution imaging and high-precision positioning for nanomanipulation. The selection of the scanning area of the AFM depends on the use of the optical microscope. However, the resolution of an optical microscope is generally no larger than 200 nm owing to wavelength limitations of visible light. Taking into consideration the two determinants of relocation—relative angular rotation and positional offset between the AFM probe and nano target—it is therefore extremely challenging to precisely relocate the AFM probe to the initial scan/manipulation area for the same nano target after the AFM probe has been replaced, or after the sample has been moved. In this paper, we investigate a rapid automated relocation method for the nano target of an AFM using a coordinate transformation. The relocation process is both simple and rapid; moreover, multiple nano targets can be relocated by only identifying a pair of reference points. It possesses a centimeter-scale location range and nano-scale precision. The main advantages of this method are that it overcomes the limitations associated with the resolution of optical microscopes, and that it is label-free on the target areas, which means that it does not require the use of special artificial markers on the target sample areas. Relocation experiments using nanospheres, DNA, SWCNTs, and nano patterns amply demonstrate the practicality and efficiency of the proposed method, which provides technical support for mass nanomanipulation and detection based on AFM for multiple nano targets that are widely distributed in a large area.

  4. A rapid and automated relocation method of an AFM probe for high-resolution imaging.

    PubMed

    Zhou, Peilin; Yu, Haibo; Shi, Jialin; Jiao, Niandong; Wang, Zhidong; Wang, Yuechao; Liu, Lianqing

    2016-09-30

    The atomic force microscope (AFM) is one of the most powerful tools for high-resolution imaging and high-precision positioning for nanomanipulation. The selection of the scanning area of the AFM depends on the use of the optical microscope. However, the resolution of an optical microscope is generally no larger than 200 nm owing to wavelength limitations of visible light. Taking into consideration the two determinants of relocation-relative angular rotation and positional offset between the AFM probe and nano target-it is therefore extremely challenging to precisely relocate the AFM probe to the initial scan/manipulation area for the same nano target after the AFM probe has been replaced, or after the sample has been moved. In this paper, we investigate a rapid automated relocation method for the nano target of an AFM using a coordinate transformation. The relocation process is both simple and rapid; moreover, multiple nano targets can be relocated by only identifying a pair of reference points. It possesses a centimeter-scale location range and nano-scale precision. The main advantages of this method are that it overcomes the limitations associated with the resolution of optical microscopes, and that it is label-free on the target areas, which means that it does not require the use of special artificial markers on the target sample areas. Relocation experiments using nanospheres, DNA, SWCNTs, and nano patterns amply demonstrate the practicality and efficiency of the proposed method, which provides technical support for mass nanomanipulation and detection based on AFM for multiple nano targets that are widely distributed in a large area. PMID:27559679

  5. A Method to Represent Heterogeneous Materials for Rapid Prototyping: The Matryoshka Approach

    PubMed Central

    Lei, Shuangyan; Frank, Matthew C.; Anderson, Donald D.; Brown, Thomas D.

    2015-01-01

    Purpose The purpose of this paper is to present a new method for representing heterogeneous materials using nested STL shells, based, in particular, on the density distributions of human bones. Design/methodology/approach Nested STL shells, called Matryoshka models, are described, based on their namesake Russian nesting dolls. In this approach, polygonal models, such as STL shells, are “stacked” inside one another to represent different material regions. The Matryoshka model addresses the challenge of representing different densities and different types of bone when reverse engineering from medical images. The Matryoshka model is generated via an iterative process of thresholding the Hounsfield Unit (HU) data using computed tomography (CT), thereby delineating regions of progressively increasing bone density. These nested shells can represent regions starting with the medullary (bone marrow) canal, up through and including the outer surface of the bone. Findings The Matryoshka approach introduced can be used to generate accurate models of heterogeneous materials in an automated fashion, avoiding the challenge of hand-creating an assembly model for input to multi-material additive or subtractive manufacturing. Originality/Value This paper presents a new method for describing heterogeneous materials: in this case, the density distribution in a human bone. The authors show how the Matryoshka model can be used to plan harvesting locations for creating custom rapid allograft bone implants from donor bone. An implementation of a proposed harvesting method is demonstrated, followed by a case study using subtractive rapid prototyping to harvest a bone implant from a human tibia surrogate. PMID:26120277

  6. A Rapid and Improved Method to Generate Recombinant Dengue Virus Vaccine Candidates.

    PubMed

    Govindarajan, Dhanasekaran; Guan, Liming; Meschino, Steven; Fridman, Arthur; Bagchi, Ansu; Pak, Irene; ter Meulen, Jan; Casimiro, Danilo R; Bett, Andrew J

    2016-01-01

    Dengue is one of the most important mosquito-borne infections accounting for severe morbidity and mortality worldwide. Recently, the tetravalent chimeric live attenuated Dengue vaccine Dengvaxia® was approved for use in several dengue endemic countries. In general, live attenuated vaccines (LAV) are very efficacious and offer long-lasting immunity against virus-induced disease. Rationally designed LAVs can be generated through reverse genetics technology, a method of generating infectious recombinant viruses from full length cDNA contained in bacterial plasmids. In vitro transcribed (IVT) viral RNA from these infectious clones is transfected into susceptible cells to generate recombinant virus. However, the generation of full-length dengue virus cDNA clones can be difficult due to the genetic instability of viral sequences in bacterial plasmids. To circumvent the need for a single plasmid containing a full length cDNA, in vitro ligation of two or three cDNA fragments contained in separate plasmids can be used to generate a full-length dengue viral cDNA template. However, in vitro ligation of multiple fragments often yields low quality template for IVT reactions, resulting in inconsistent low yield RNA. These technical difficulties make recombinant virus recovery less efficient. In this study, we describe a simple, rapid and efficient method of using LONG-PCR to recover recombinant chimeric Yellow fever dengue (CYD) viruses as potential dengue vaccine candidates. Using this method, we were able to efficiently generate several viable recombinant viruses without introducing any artificial mutations into the viral genomes. We believe that the techniques reported here will enable rapid and efficient recovery of recombinant flaviviruses for evaluation as vaccine candidates and, be applicable to the recovery of other RNA viruses. PMID:27008550

  7. Development and validation of a UPLC method for rapid and simultaneous analysis of proton pump inhibitors.

    PubMed

    Addo, Richard T; Davis, Kenneth; Ubale, Ruhi; Owen, Joel S; Watkins, E Blake

    2015-02-01

    Proton pump inhibitors (PPIs) are used extensively for the relief of gastroesophageal reflux, peptic ulcers, and other hypersecretory conditions. Some of the commonly used PPIs-omeprazole, esomeprazole, lansoprazole, pantoprazole, and rabeprazole-were used in this study with the aim of developing a rapid ultra performance liquid chromatography (UPLC) method for detecting each and allowing separation and quantification of a mixture of PPIs. An analysis of samples was performed on a UPLC system equipped with a quaternary solvent delivery system, a refrigerated sample manager, a column heater, a photo diode array detector scanning from 210 to 400 nm, and a C18 analytical column (50 mm × 3.0 mm, 1.7-μm particle size). The chromatographic analysis of the PPI samples and standards was performed using gradient elution with acetonitrile and water. The calibration curve range varied for each of the PPIs ranging from a lower limit of 0.75-1.78 μg/mL to a maximum concentration of 200 μg/mL with a regression coefficient (r (2)) of ≥0.98. The accuracy and precision were calculated, and the %RSD was determined to be ≤0.21% (intraday) and ≤5% (interday). The LOD was 0.23-0.59 μg/mL and the LOQ was 0.71-1.78 μg/mL for each of the drugs analyzed. The method was capable of detecting and quantifying each drug in a mixture with good resolution and a total run time of less than 5 min. Herein, we report an efficient and rapid analytical method for the simultaneous detection of multiple PPIs in a mixture. PMID:25160675

  8. A Method for the Rapid Generation of Nonsequential Light-Response Curves of Chlorophyll Fluorescence1

    PubMed Central

    Serôdio, João; Ezequiel, João; Frommlet, Jörg; Laviale, Martin; Lavaud, Johann

    2013-01-01

    Light-response curves (LCs) of chlorophyll fluorescence are widely used in plant physiology. Most commonly, LCs are generated sequentially, exposing the same sample to a sequence of distinct actinic light intensities. These measurements are not independent, as the response to each new light level is affected by the light exposure history experienced during previous steps of the LC, an issue particularly relevant in the case of the popular rapid light curves. In this work, we demonstrate the proof of concept of a new method for the rapid generation of LCs from nonsequential, temporally independent fluorescence measurements. The method is based on the combined use of sample illumination with digitally controlled, spatially separated beams of actinic light and a fluorescence imaging system. It allows the generation of a whole LC, including a large number of actinic light steps and adequate replication, within the time required for a single measurement (and therefore named “single-pulse light curve”). This method is illustrated for the generation of LCs of photosystem II quantum yield, relative electron transport rate, and nonphotochemical quenching on intact plant leaves exhibiting distinct light responses. This approach makes it also possible to easily characterize the integrated dynamic light response of a sample by combining the measurement of LCs (actinic light intensity is varied while measuring time is fixed) with induction/relaxation kinetics (actinic light intensity is fixed and the response is followed over time), describing both how the response to light varies with time and how the response kinetics varies with light intensity. PMID:24067245

  9. OSO paradigm--A rapid behavioral screening method for acute psychosocial stress reactivity in mice.

    PubMed

    Brzózka, M M; Unterbarnscheidt, T; Schwab, M H; Rossner, M J

    2016-02-01

    Chronic psychosocial stress is an important environmental risk factor for the development of psychiatric diseases. However, studying the impact of chronic psychosocial stress in mice is time consuming and thus not optimally suited to 'screen' increasing numbers of genetically manipulated mouse models for psychiatric endophenotypes. Moreover, many studies focus on restraint stress, a strong physical stressor with limited relevance for psychiatric disorders. Here, we describe a simple and a rapid method based on the resident-intruder paradigm to examine acute effects of mild psychosocial stress in mice. The OSO paradigm (open field--social defeat--open field) compares behavioral consequences on locomotor activity, anxiety and curiosity before and after exposure to acute social defeat stress. We first evaluated OSO in male C57Bl/6 wildtype mice where a single episode of social defeat reduced locomotor activity, increased anxiety and diminished exploratory behavior. Subsequently, we applied the OSO paradigm to mouse models of two schizophrenia (SZ) risk genes. Transgenic mice with neuronal overexpression of Neuregulin-1 (Nrg1) type III showed increased risk-taking behavior after acute stress exposure suggesting that NRG1 dysfunction is associated with altered affective behavior. In contrast, Tcf4 transgenic mice displayed a normal stress response which is in line with the postulated predominant contribution of TCF4 to cognitive deficits of SZ. In conclusion, the OSO paradigm allows for rapid screening of selected psychosocial stress-induced behavioral endophenotypes in mouse models of psychiatric diseases.

  10. A rapid fluorescence based method for the quantitative analysis of cell culture media photo-degradation.

    PubMed

    Calvet, Amandine; Li, Boyan; Ryder, Alan G

    2014-01-01

    Cell culture media are very complex chemical mixtures that are one of the most important aspects in biopharmaceutical manufacturing. The complex composition of many media leads to materials that are inherently unstable and of particular concern, is media photo-damage which can adversely affect cell culture performance. This can be significant particularly with small scale transparent bioreactors and media containers are used for process development or research. Chromatographic and/or mass spectrometry based analyses are often time-consuming and expensive for routine high-throughput media analysis particularly during scale up or development processes. Fluorescence excitation-emission matrix (EEM) spectroscopy combined with multi-way chemometrics is a robust methodology applicable for the analysis of raw materials, media, and bioprocess broths. Here we demonstrate how EEM spectroscopy was used for the rapid, quantitative analysis of media degradation caused by ambient visible light exposure. The primary degradation pathways involve riboflavin (leading to the formation of lumichrome, LmC) which also causes photo-sensitised degradation of tryptophan, which was validated using high pressure liquid chromatography (HPLC) measurements. The use of PARallel FACtor analysis (PARAFAC), multivariate curve resolution (MCR), and N-way partial least squares (NPLS) enabled the rapid and easy monitoring of the compositional changes in tryptophan (Trp), tyrosine (Tyr), and riboflavin (Rf) concentration caused by ambient light exposure. Excellent agreement between HPLC and EEM methods was found for the change in Trp, Rf, and LmC concentrations. PMID:24356227

  11. A Rapid and Efficient Method for Evaluation of Suspect Testimony: Palynological Scanning.

    PubMed

    Wiltshire, Patricia E J; Hawksworth, David L; Edwards, Kevin J

    2015-11-01

    A rapid method for evaluating suspect testimony is valuable at any stage in an inquiry and can result in a change of direction in an investigation. Rape cases, in particular, can present problems where a defendant renders DNA analysis redundant by claiming that the claimant consented to have sexual relations. Forensic palynology is valuable in confirming or eliminating locations as being crime scenes, thus checking the testimony of both parties. In contrast to some forensic disciplines, forensic palynology can provide critical information without time-consuming full analysis. Two cases are described where the palynological assemblages from comparator samples of pertinent places were compared with those obtained from clothing of claimants and defendants. The results of rapid microscopical scanning of relevant preparations led to early confessions, thus obviating the need for costly analyses and protracted court proceedings. A third case demonstrates the unbiased nature of this technique where a man, although innocent of any offense, lied about having visited the crime scene for fear of prosecution. This highlights the need for sensitive policing in claims of rape.

  12. A rapid and efficient inoculation method for Tomato spotted wilt tospovirus.

    PubMed

    Mandal, B; Csinos, A S; Martinez-Ochoa, N; Pappu, H R

    2008-04-01

    A rapid and efficient method of inoculation for Tomato spotted wilt tospovirus (TSWV) was achieved by applying the inoculum with a device consisting of a spray gun, an atomizer and a CO2-powered sprayer. The inoculum contained infected leaf sap prepared in 0.1M phosphate buffer, pH 7.0, 0.2% sodium sulfite and 0.01 M 2-mercaptoethanol (1g: 10 ml) and 1% each of Celite 545 and Carborundum 320 grit. The spray application of chilled inoculum at the rate of 1.1 ml/plant and at an air pressure of 4.1 bar resulted in systemic infection nearly to a 100% of the tobacco (Nicotiana tabacum) plants inoculated. The inoculation procedure was successfully applied to two other important host species of TSWV, peanut (Arachis hypogaea) and tomato (Lycopersicon esculentum), where 75.0-100% and 72.2-91.6% plants developed systemic infection, respectively. The approach facilitated a much faster inoculation of test plants with TSWV as it was estimated to be about 50 times quicker (depending on the plant species) than the hand inoculation. The procedure is suitable for rapid and simultaneous inoculation of a large number of test plants with TSWV and should facilitate screening of germplasm and breeding lines for virus resistance. PMID:18272238

  13. Development of a laboratory method to predict rapidly the availability of radiocaesium.

    PubMed

    Singleton, D L; Livens, F R; Beresford, N A; Howard, B J; Barnett, C L; Mayes, R W; Segal, M G

    1992-03-01

    A simple extraction procedure has been developed to assess rapidly the probable extent of the transfer of radiocaesium into ruminant food products soon after a nuclear accident. The in vitro extractions were validated against true absorption measurements of different forms of radiocaesium in the sheep gut. Extractions were performed on a range of different radiocaesium sources. Some of these sources were artificial (ionic radiocaesium adsorbed onto bentonite, silica spheres and filter-papers) and others were environmentally contaminated [silt from the Ravenglass Estuary contaminated by effluent from British Nuclear Fuels Limited (BNFL) Sellafield, and upland grass and heather contaminated by Chernobyl fallout]. Laboratory experiments concentrated primarily on the use of simple inorganic extractants in competitive ion-exchange processes. Of the reagents used, 0.1 mol dm-3 stable caesium chloride solution was the most effective extractant. The proportion of radiocaesium extracted by 0.1 mol dm-3 caesium chloride correlated well with measurements of true absorption. Extracting radiocaesium using 0.1 mol dm-3 caesium chloride proved to be an inexpensive and rapid method of predicting the availability of radiocaesium for absorption in the ruminant gut, giving results within 24 h. Further extractions were carried out using cellulase/pepsin simulated digestions and ovine rumen fluid. Results suggested that the availability of radiocaesium from some inorganic sources may be underestimated using such techniques.

  14. [Rapid biochemical method for the detection of paralytical shellfish poisoning toxins in shellfish from seafood market].

    PubMed

    Liu, Yuan-yuan; Cheng, Jin-ping; Gao, Li-li; Wang, Jin-hui; Song, Yu-ling; Chen, Xue; Wang, Wen-hua

    2010-07-01

    A rapid biochemical method was discussed in order to detect low concentration of paralytic shellfish poisoning (PSP) in sea food. The mice were injected with PSP extract of bivalves (1 and 0.2 microg/kg respectively, as STX equivalents) purchased from seafood market. ACh, AChE, NO and NOS in blood were studied at 15, 60, 120 min respectively. The results showed that at low dose (0.2 microg/kg) and 15 min, only the contents of ACh changed significantly compared with control group (p < 0.05), which was (141.2 +/- 14.8) microg/mg, while the contents of NO and the activities of NOS changed until 120 min, compared to control group (p < 0.05) ,which were (68.7 +/- 3.8) micromol/g and (40.1 +/- 4.9) U/mg respectively. At high dose the contents of ACh changed at all three time point. It can be suggested that the contents of ACh is the only one of four indexes which can response to PSP at low dose in an early stage (15 min) and may be selected as a biochemical index for rapid detection of PSP.

  15. A Rapid and Efficient Method for Evaluation of Suspect Testimony: Palynological Scanning.

    PubMed

    Wiltshire, Patricia E J; Hawksworth, David L; Edwards, Kevin J

    2015-11-01

    A rapid method for evaluating suspect testimony is valuable at any stage in an inquiry and can result in a change of direction in an investigation. Rape cases, in particular, can present problems where a defendant renders DNA analysis redundant by claiming that the claimant consented to have sexual relations. Forensic palynology is valuable in confirming or eliminating locations as being crime scenes, thus checking the testimony of both parties. In contrast to some forensic disciplines, forensic palynology can provide critical information without time-consuming full analysis. Two cases are described where the palynological assemblages from comparator samples of pertinent places were compared with those obtained from clothing of claimants and defendants. The results of rapid microscopical scanning of relevant preparations led to early confessions, thus obviating the need for costly analyses and protracted court proceedings. A third case demonstrates the unbiased nature of this technique where a man, although innocent of any offense, lied about having visited the crime scene for fear of prosecution. This highlights the need for sensitive policing in claims of rape. PMID:26212473

  16. Bacterial Cytological Profiling (BCP) as a Rapid and Accurate Antimicrobial Susceptibility Testing Method for Staphylococcus aureus.

    PubMed

    Quach, D T; Sakoulas, G; Nizet, V; Pogliano, J; Pogliano, K

    2016-02-01

    Successful treatment of bacterial infections requires the timely administration of appropriate antimicrobial therapy. The failure to initiate the correct therapy in a timely fashion results in poor clinical outcomes, longer hospital stays, and higher medical costs. Current approaches to antibiotic susceptibility testing of cultured pathogens have key limitations ranging from long run times to dependence on prior knowledge of genetic mechanisms of resistance. We have developed a rapid antimicrobial susceptibility assay for Staphylococcus aureus based on bacterial cytological profiling (BCP), which uses quantitative fluorescence microscopy to measure antibiotic induced changes in cellular architecture. BCP discriminated between methicillin-susceptible (MSSA) and -resistant (MRSA) clinical isolates of S. aureus (n = 71) within 1-2 h with 100% accuracy. Similarly, BCP correctly distinguished daptomycin susceptible (DS) from daptomycin non-susceptible (DNS) S. aureus strains (n = 20) within 30 min. Among MRSA isolates, BCP further identified two classes of strains that differ in their susceptibility to specific combinations of beta-lactam antibiotics. BCP provides a rapid and flexible alternative to gene-based susceptibility testing methods for S. aureus, and should be readily adaptable to different antibiotics and bacterial species as new mechanisms of resistance or multidrug-resistant pathogens evolve and appear in mainstream clinical practice. PMID:26981574

  17. A rapid fluorescence based method for the quantitative analysis of cell culture media photo-degradation.

    PubMed

    Calvet, Amandine; Li, Boyan; Ryder, Alan G

    2014-01-01

    Cell culture media are very complex chemical mixtures that are one of the most important aspects in biopharmaceutical manufacturing. The complex composition of many media leads to materials that are inherently unstable and of particular concern, is media photo-damage which can adversely affect cell culture performance. This can be significant particularly with small scale transparent bioreactors and media containers are used for process development or research. Chromatographic and/or mass spectrometry based analyses are often time-consuming and expensive for routine high-throughput media analysis particularly during scale up or development processes. Fluorescence excitation-emission matrix (EEM) spectroscopy combined with multi-way chemometrics is a robust methodology applicable for the analysis of raw materials, media, and bioprocess broths. Here we demonstrate how EEM spectroscopy was used for the rapid, quantitative analysis of media degradation caused by ambient visible light exposure. The primary degradation pathways involve riboflavin (leading to the formation of lumichrome, LmC) which also causes photo-sensitised degradation of tryptophan, which was validated using high pressure liquid chromatography (HPLC) measurements. The use of PARallel FACtor analysis (PARAFAC), multivariate curve resolution (MCR), and N-way partial least squares (NPLS) enabled the rapid and easy monitoring of the compositional changes in tryptophan (Trp), tyrosine (Tyr), and riboflavin (Rf) concentration caused by ambient light exposure. Excellent agreement between HPLC and EEM methods was found for the change in Trp, Rf, and LmC concentrations.

  18. A rapid method for infectivity titration of Andes hantavirus using flow cytometry.

    PubMed

    Barriga, Gonzalo P; Martínez-Valdebenito, Constanza; Galeno, Héctor; Ferrés, Marcela; Lozach, Pierre-Yves; Tischler, Nicole D

    2013-11-01

    The focus assay is currently the most commonly used technique for hantavirus titer determination. This method requires an incubation time of between 5 and 11 days to allow the appearance of foci after several rounds of viral infection. The following work presents a rapid Andes virus (ANDV) titration assay, based on viral nucleocapsid protein (N) detection in infected cells by flow cytometry. To this end, an anti-N monoclonal antibody was used that was developed and characterized previously. ANDV N could be detected as early as 6 h post-infection, while viral release was not observed until 24-48 h post-infection. Given that ANDV detection was performed during its first round of infection, a time reduction for titer determination was possible and provided results in only two days. The viral titer was calculated from the percentage of N positive cells and agreed with focus assay titers. Furthermore, the assay was applied to quantify the inhibition of ANDV cell entry by patient sera and by preventing endosome acidification. This novel hantavirus titration assay is a highly quantitative and sensitive tool that facilitates infectivity titration of virus stocks, rapid screening for antiviral drugs, and may be further used to detect and quantify infectious virus in human samples.

  19. Bacterial Cytological Profiling (BCP) as a Rapid and Accurate Antimicrobial Susceptibility Testing Method for Staphylococcus aureus

    PubMed Central

    Quach, D.T.; Sakoulas, G.; Nizet, V.; Pogliano, J.; Pogliano, K.

    2016-01-01

    Successful treatment of bacterial infections requires the timely administration of appropriate antimicrobial therapy. The failure to initiate the correct therapy in a timely fashion results in poor clinical outcomes, longer hospital stays, and higher medical costs. Current approaches to antibiotic susceptibility testing of cultured pathogens have key limitations ranging from long run times to dependence on prior knowledge of genetic mechanisms of resistance. We have developed a rapid antimicrobial susceptibility assay for Staphylococcus aureus based on bacterial cytological profiling (BCP), which uses quantitative fluorescence microscopy to measure antibiotic induced changes in cellular architecture. BCP discriminated between methicillin-susceptible (MSSA) and -resistant (MRSA) clinical isolates of S. aureus (n = 71) within 1–2 h with 100% accuracy. Similarly, BCP correctly distinguished daptomycin susceptible (DS) from daptomycin non-susceptible (DNS) S. aureus strains (n = 20) within 30 min. Among MRSA isolates, BCP further identified two classes of strains that differ in their susceptibility to specific combinations of beta-lactam antibiotics. BCP provides a rapid and flexible alternative to gene-based susceptibility testing methods for S. aureus, and should be readily adaptable to different antibiotics and bacterial species as new mechanisms of resistance or multidrug-resistant pathogens evolve and appear in mainstream clinical practice. PMID:26981574

  20. Modeling Radiometric Uncertainty for Vision with Tone-Mapped Color Images.

    PubMed

    Chakrabarti, Ayan; Xiong, Ying; Sun, Baochen; Darrell, Trevor; Scharstein, Daniel; Zickler, Todd; Saenko, Kate

    2014-11-01

    To produce images that are suitable for display, tone-mapping is widely used in digital cameras to map linear color measurements into narrow gamuts with limited dynamic range. This introduces non-linear distortion that must be undone, through a radiometric calibration process, before computer vision systems can analyze such photographs radiometrically. This paper considers the inherent uncertainty of undoing the effects of tone-mapping. We observe that this uncertainty varies substantially across color space, making some pixels more reliable than others. We introduce a model for this uncertainty and a method for fitting it to a given camera or imaging pipeline. Once fit, the model provides for each pixel in a tone-mapped digital photograph a probability distribution over linear scene colors that could have induced it. We demonstrate how these distributions can be useful for visual inference by incorporating them into estimation algorithms for a representative set of vision tasks.

  1. Evaluation of a rapid method for preparation of fatty acid methyl esters for analysis by gas-liquid chromatography.

    PubMed

    Misir, R; Laarveld, B; Blair, R

    1985-08-30

    The major limitation to fatty acid analysis by gas-liquid chromatography is associated with preparation of fatty acid methyl esters (FAME). In the present study, FAME preparations were made from plant oils (corn, olive, sunflower), sunflower oil margarine, lard and various animal tissue fats by a rapid transesterification involving tetramethylammonium hydroxide in methanol, and also by a longer conventional saponification-esterification method. Fats from animal (beef, mutton, pork) adipose tissues were extracted by a simpler modified procedure and also by the Folch method prior to the rapid and the conventional FAME preparations, respectively. FAME analysis on a gas-liquid chromatograph equipped with a Silar 10C glass capillary column indicated similar fatty acid composition of a given fat or oil, whether FAME was prepared by the rapid or the longer conventional method. The data obtained by both methods were very highly correlated for all the fats (r = 0.9895 - 0.9999). However, the rapid method showed a tendency for enhanced recoveries of lower chain fatty acids (e.g. 14:0), and also of unsaturated C18 isomers. Possibly, losses of fatty acids that occurred during the lengthy fat extraction, fatty acid esterification or ether-evaporation FAME concentration steps (conventional method) were minimised by the single transesterification step (rapid method). This rapid transesterification method appears to be an attractive alternative to FAME preparation from a wide variety of different fats for gas-liquid chromatographic analysis. PMID:4044736

  2. A method for rapid quantitative assessment of biofilms with biomolecular staining and image analysis

    SciTech Connect

    Larimer, Curtis J.; Winder, Eric M.; Jeters, Robert T.; Prowant, Matthew S.; Nettleship, Ian; Addleman, Raymond S.; Bonheyo, George T.

    2015-12-07

    Here, the accumulation of bacteria in surface attached biofilms, or biofouling, can be detrimental to human health, dental hygiene, and many industrial processes. A critical need in identifying and preventing the deleterious effects of biofilms is the ability to observe and quantify their development. Analytical methods capable of assessing early stage fouling are cumbersome or lab-confined, subjective, and qualitative. Herein, a novel photographic method is described that uses biomolecular staining and image analysis to enhance contrast of early stage biofouling. A robust algorithm was developed to objectively and quantitatively measure surface accumulation of Pseudomonas putida from photographs and results were compared to independent measurements of cell density. Results from image analysis quantified biofilm growth intensity accurately and with approximately the same precision of the more laborious cell counting method. This simple method for early stage biofilm detection enables quantifiable measurement of surface fouling and is flexible enough to be applied from the laboratory to the field. Broad spectrum staining highlights fouling biomass, photography quickly captures a large area of interest, and image analysis rapidly quantifies fouling in the image.

  3. A method for rapid quantitative assessment of biofilms with biomolecular staining and image analysis

    DOE PAGES

    Larimer, Curtis J.; Winder, Eric M.; Jeters, Robert T.; Prowant, Matthew S.; Nettleship, Ian; Addleman, Raymond S.; Bonheyo, George T.

    2015-12-07

    Here, the accumulation of bacteria in surface attached biofilms, or biofouling, can be detrimental to human health, dental hygiene, and many industrial processes. A critical need in identifying and preventing the deleterious effects of biofilms is the ability to observe and quantify their development. Analytical methods capable of assessing early stage fouling are cumbersome or lab-confined, subjective, and qualitative. Herein, a novel photographic method is described that uses biomolecular staining and image analysis to enhance contrast of early stage biofouling. A robust algorithm was developed to objectively and quantitatively measure surface accumulation of Pseudomonas putida from photographs and results weremore » compared to independent measurements of cell density. Results from image analysis quantified biofilm growth intensity accurately and with approximately the same precision of the more laborious cell counting method. This simple method for early stage biofilm detection enables quantifiable measurement of surface fouling and is flexible enough to be applied from the laboratory to the field. Broad spectrum staining highlights fouling biomass, photography quickly captures a large area of interest, and image analysis rapidly quantifies fouling in the image.« less

  4. Rapid fusion method for the determination of refractory thorium and uranium isotopes in soil samples

    SciTech Connect

    Maxwell, Sherrod L.; Hutchison, Jay B.; McAlister, Daniel R.

    2015-02-14

    Recently, approximately 80% of participating laboratories failed to accurately determine uranium isotopes in soil samples in the U.S Department of Energy Mixed Analyte Performance Evaluation Program (MAPEP) Session 30, due to incomplete dissolution of refractory particles in the samples. Failing laboratories employed acid dissolution methods, including hydrofluoric acid, to recover uranium from the soil matrix. The failures illustrate the importance of rugged soil dissolution methods for the accurate measurement of analytes in the sample matrix. A new rapid fusion method has been developed by the Savannah River National Laboratory (SRNL) to prepare 1-2 g soil sample aliquots very quickly, with total dissolution of refractory particles. Soil samples are fused with sodium hydroxide at 600 ºC in zirconium crucibles to enable complete dissolution of the sample. Uranium and thorium are separated on stacked TEVA and TRU extraction chromatographic resin cartridges, prior to isotopic measurements by alpha spectrometry on cerium fluoride microprecipitation sources. Plutonium can also be separated and measured using this method. Batches of 12 samples can be prepared for measurement in <5 hours.

  5. Rapid fusion method for the determination of refractory thorium and uranium isotopes in soil samples

    DOE PAGES

    Maxwell, Sherrod L.; Hutchison, Jay B.; McAlister, Daniel R.

    2015-02-14

    Recently, approximately 80% of participating laboratories failed to accurately determine uranium isotopes in soil samples in the U.S Department of Energy Mixed Analyte Performance Evaluation Program (MAPEP) Session 30, due to incomplete dissolution of refractory particles in the samples. Failing laboratories employed acid dissolution methods, including hydrofluoric acid, to recover uranium from the soil matrix. The failures illustrate the importance of rugged soil dissolution methods for the accurate measurement of analytes in the sample matrix. A new rapid fusion method has been developed by the Savannah River National Laboratory (SRNL) to prepare 1-2 g soil sample aliquots very quickly, withmore » total dissolution of refractory particles. Soil samples are fused with sodium hydroxide at 600 ºC in zirconium crucibles to enable complete dissolution of the sample. Uranium and thorium are separated on stacked TEVA and TRU extraction chromatographic resin cartridges, prior to isotopic measurements by alpha spectrometry on cerium fluoride microprecipitation sources. Plutonium can also be separated and measured using this method. Batches of 12 samples can be prepared for measurement in <5 hours.« less

  6. Validation and application of an improved method for the rapid determination of proline in grape berries.

    PubMed

    Rienth, Markus; Romieu, Charles; Gregan, Rebecca; Walsh, Caroline; Torregrosa, Laurent; Kelly, Mary T

    2014-04-16

    A rapid and sensitive method is presented for the determination of proline in grape berries. Following acidification with formic acid, proline is derivatized by heating at 100 °C for 15 min with 3% ninhydrin in dimethyl sulfoxide, and the absorbance, which is stable for at least 60 min, is read at 520 nm. The method was statistically validated in the concentration range from 2.5 to 15 mg/L, giving a repeatability and intermediate precision of generally <3%; linearity was determined using the lack of fit test. Results obtained with this method concurred (r = 0.99) with those obtained for the same samples on an amino acid analyzer. In terms of sample preparation, a simple dilution (5-20-fold) is required, and sugars, primary amino acids, and anthocyanins were demonstrated not to interfere, as the latter are bleached by ninhydrin under the experimental conditions. The method was applied to the study of proline accumulation in the fruits of microvines grown in phytotrons, and it was established that proline accumulation and concentrations closely resemble those of field-grown macrovines. PMID:24617570

  7. A Rapid Method to Achieve Aero-Engine Blade Form Detection

    PubMed Central

    Sun, Bin; Li, Bing

    2015-01-01

    This paper proposes a rapid method to detect aero-engine blade form, according to the characteristics of an aero-engine blade surface. This method first deduces an inclination error model in free-form surface measurements based on the non-contact laser triangulation principle. Then a four-coordinate measuring system was independently developed, a special fixture was designed according to the blade shape features, and a fast measurement of the blade features path was planned. Finally, by using the inclination error model for correction of acquired data, the measurement error that was caused by tilt form is compensated. As a result the measurement accuracy of the Laser Displacement Sensor was less than 10 μm. After the experimental verification, this method makes full use of optical non-contact measurement fast speed, high precision and wide measuring range of features. Using a standard gauge block as a measurement reference, the coordinate system conversion data is simple and practical. It not only improves the measurement accuracy of the blade surface, but also its measurement efficiency. Therefore, this method increases the value of the measurement of complex surfaces. PMID:26039420

  8. Evaluation of Colorimetric Methods Using Nicotinamide for Rapid Detection of Pyrazinamide Resistance in Mycobacterium tuberculosis▿

    PubMed Central

    Mirabal, Niuris C.; Yzquierdo, Sergio L.; Lemus, Dihadenys; Madruga, Mariela; Milián, Yoslaine; Echemendía, Miguel; Takiff, Howard; Martin, Anandi; Van der Stuyf, Patrick; Palomino, Juan Carlos; Montoro, Ernesto

    2010-01-01

    The direct detection of pyrazinamide resistance in Mycobacterium tuberculosis is sufficiently difficult that many laboratories do not attempt it. Most pyrazinamide resistance is caused by mutations that inactivate the pyrazinamidase enzyme needed to convert the prodrug pyrazinamide to its active form. We evaluated two newer and simpler methods to assess pyrazinamidase activity, the nitrate reductase and malachite green microtube assays, using nicotinamide in place of pyrazinamide. A total of 102 strains were tested by these methods and the results compared with those obtained by the classic Wayne assay. Mutations in the pncA gene were identified by sequencing the pncA genes from all isolates in which pyrazinamide resistance was detected by any of the three methods. Both the nitrate reductase and malachite green microtube assays showed sensitivities of 93.75% and specificities of 97.67%. Mutations in the pncA gene were found in 14 of 16 strains that were pyrazinamide resistant and in 1 of 4 strains that were sensitive by the Wayne assay. Both of these simple methods, used with nicotinamide, are promising and inexpensive alternatives for the rapid detection of pyrazinamide resistance in limited-resource countries. PMID:20554826

  9. A rapid and stable Agrobacterium-mediated transformation method of a medicinal plant Chelone glabra L.

    PubMed

    Gao, Zhenrui; Li, Ying; Chen, Jinhua; Chen, Zhixing; Cui, Min-Long

    2015-03-01

    Transformation approach is a useful tool for the study of gene function, the mechanism of molecular regulation, and increase usefulness of components by reverse genetic approach in plants. In this study, we developed a stable and rapid method for Agrobacterium-mediated transformation of a medicinal plant Chelone glabra L. using leaf explants. Stable transformants were obtained using Agrobacterium tumefaciens strains GV2260 and GV3101 that harbored the binary vector pBI121 and contained the neomycin phosphotransferase gene (NPT II) as a selectable marker and a reporter gene β-glucuronidase (GUS). Putative transformants were identified by kanamycin selection and a histochemical assay. PCR and Southern blot analysis confirmed the integration of the GUS gene into transformed genomes as well as detected stable expression of the β-glucuronidase gene (GUS) by RT-PCR. Resulting transformed plants had morphologically normal phenotypes. This method requires two changes of medium and few leaf explants as well as the transformation efficiency of 2-8 % after 2-3 months of inoculation. This method can provide a quick and economical transformation method for reverse genetic approach to change the secondary metabolic pathway to increase useful components in C. glabra.

  10. A rapid method to produce high yields of purified rotavirus particles.

    PubMed

    Villegas, Guillermo Adolfo; Argüelles, Marcelo Horacio; Castello, Alejandro Andrés; Mas, Neus Jiménez; Glikmann, Graciela

    2002-06-01

    A rapid purification method of rotavirus particles to high yield retaining the double shelled structure of infectious virus is described. Group A rotavirus (UK strain) was concentrated through a cushion of colloidal silica (rho=1.10 g/cm(3)) or by precipitating with polyethylene glycol 8000. After concentration, infectious rotavirus was cleared from host cell proteins by density equilibrium centrifugation in gradients of colloidal silica using near vertical rotors. Characterisation of purified virus assessed by electron microscopy and poliacrylamide gel electrophoresis (PAGE) revealed the typical wheel shape structure of rotavirus particles and the presence of the 11 segments of dsRNA arranged in the 4-2-3-2 pattern. Presence of rotavirus structural proteins including VP6, VP4 and VP7 from the outer shell, was demonstrated by SDS-PAGE and Western blot using polyclonal and VP6-specific monoclonal antibodies. This method achieved a approximately 1500 fold purification, which retained approximately 80% infectivity depending on the concentration protocol used, while yielding 160 microg of viral protein per each litre of infected cell culture medium. The time required for the isopycnic centrifugation was only 25 min and the entire completion of the method required 3.5 h. The method is simple technically and applicable to the purification of large as well as minute amounts of virus.

  11. [A rapid dialysis method for analysis of artificial sweeteners in food].

    PubMed

    Tahara, Shoichi; Fujiwara, Takushi; Yasui, Akiko; Hayafuji, Chieko; Kobayashi, Chigusa; Uematsu, Yoko

    2014-01-01

    A simple and rapid dialysis method was developed for the extraction and purification of four artificial sweeteners, namely, sodium saccharin (Sa), acesulfame potassium (AK), aspartame (APM), and dulcin (Du), which are present in various foods. Conventional dialysis uses a membrane dialysis tube approximately 15 cm in length and is carried out over many hours owing to the small membrane area and owing to inefficient mixing. In particular, processed cereal products such as cookies required treatment for 48 hours to obtain satisfactory recovery of the compounds. By increasing the tube length to 55 cm and introducing efficient mixing by inversion at half-hour intervals, the dialysis times of the four artificial sweeteners, spiked at 0.1 g/kg in the cookie, were shortened to 4 hours. Recovery yields of 88.9-103.2% were obtained by using the improved method, whereas recovery yields were low (65.5-82.0%) by the conventional method. Recovery yields (%) of Sa, AK, APM, and Du, spiked at 0.1 g/kg in various foods, were 91.6-100.1, 93.9-100.1, 86.7-100.0 and 88.7-104.7 using the improved method.

  12. A Rapid and Scalable Method for Multilocus Species Delimitation Using Bayesian Model Comparison and Rooted Triplets

    PubMed Central

    Fujisawa, Tomochika; Aswad, Amr; Barraclough, Timothy G.

    2016-01-01

    Multilocus sequence data provide far greater power to resolve species limits than the single locus data typically used for broad surveys of clades. However, current statistical methods based on a multispecies coalescent framework are computationally demanding, because of the number of possible delimitations that must be compared and time-consuming likelihood calculations. New methods are therefore needed to open up the power of multilocus approaches to larger systematic surveys. Here, we present a rapid and scalable method that introduces 2 new innovations. First, the method reduces the complexity of likelihood calculations by decomposing the tree into rooted triplets. The distribution of topologies for a triplet across multiple loci has a uniform trinomial distribution when the 3 individuals belong to the same species, but a skewed distribution if they belong to separate species with a form that is specified by the multispecies coalescent. A Bayesian model comparison framework was developed and the best delimitation found by comparing the product of posterior probabilities of all triplets. The second innovation is a new dynamic programming algorithm for finding the optimum delimitation from all those compatible with a guide tree by successively analyzing subtrees defined by each node. This algorithm removes the need for heuristic searches used by current methods, and guarantees that the best solution is found and potentially could be used in other systematic applications. We assessed the performance of the method with simulated, published, and newly generated data. Analyses of simulated data demonstrate that the combined method has favorable statistical properties and scalability with increasing sample sizes. Analyses of empirical data from both eukaryotes and prokaryotes demonstrate its potential for delimiting species in real cases. PMID:27055648

  13. Rapid and alternative fabrication method for microfluidic paper based analytical devices.

    PubMed

    Malekghasemi, Soheil; Kahveci, Enver; Duman, Memed

    2016-10-01

    A major application of microfluidic paper-based analytical devices (µPADs) includes the field of point-of-care (POC) diagnostics. It is important for POC diagnostics to possess properties such as ease-of-use and low cost. However, µPADs need multiple instruments and fabrication steps. In this study, two different chemicals (Hexamethyldisilazane and Tetra-ethylorthosilicate) were used, and three different methods (heating, plasma treatment, and microwave irradiation) were compared to develop µPADs. Additionally, an inkjet-printing technique was used for generating a hydrophilic channel and printing certain chemical agents on different regions of a modified filter paper. A rapid and effective fabrication method to develop µPADs within 10min was introduced using an inkjet-printing technique in conjunction with a microwave irradiation method. Environmental scanning electron microscope (ESEM) and x-ray photoelectron spectroscopy (XPS) were used for morphology characterization and determining the surface chemical compositions of the modified filter paper, respectively. Contact angle measurements were used to fulfill the hydrophobicity of the treated filter paper. The highest contact angle value (141°±1) was obtained using the microwave irradiation method over a period of 7min, when the filter paper was modified by TEOS. Furthermore, by using this method, the XPS results of TEOS-modified filter paper revealed Si2p (23%) and Si-O bounds (81.55%) indicating the presence of Si-O-Si bridges and Si(OEt) groups, respectively. The ESEM results revealed changes in the porous structures of the papers and decreases in the pore sizes. Washburn assay measurements tested the efficiency of the generated hydrophilic channels in which similar water penetration rates were observed in the TEOS-modified filter paper and unmodified (plain) filter paper. The validation of the developed µPADs was performed by utilizing the rapid urease test as a model test system. The detection limit of

  14. Rapid and alternative fabrication method for microfluidic paper based analytical devices.

    PubMed

    Malekghasemi, Soheil; Kahveci, Enver; Duman, Memed

    2016-10-01

    A major application of microfluidic paper-based analytical devices (µPADs) includes the field of point-of-care (POC) diagnostics. It is important for POC diagnostics to possess properties such as ease-of-use and low cost. However, µPADs need multiple instruments and fabrication steps. In this study, two different chemicals (Hexamethyldisilazane and Tetra-ethylorthosilicate) were used, and three different methods (heating, plasma treatment, and microwave irradiation) were compared to develop µPADs. Additionally, an inkjet-printing technique was used for generating a hydrophilic channel and printing certain chemical agents on different regions of a modified filter paper. A rapid and effective fabrication method to develop µPADs within 10min was introduced using an inkjet-printing technique in conjunction with a microwave irradiation method. Environmental scanning electron microscope (ESEM) and x-ray photoelectron spectroscopy (XPS) were used for morphology characterization and determining the surface chemical compositions of the modified filter paper, respectively. Contact angle measurements were used to fulfill the hydrophobicity of the treated filter paper. The highest contact angle value (141°±1) was obtained using the microwave irradiation method over a period of 7min, when the filter paper was modified by TEOS. Furthermore, by using this method, the XPS results of TEOS-modified filter paper revealed Si2p (23%) and Si-O bounds (81.55%) indicating the presence of Si-O-Si bridges and Si(OEt) groups, respectively. The ESEM results revealed changes in the porous structures of the papers and decreases in the pore sizes. Washburn assay measurements tested the efficiency of the generated hydrophilic channels in which similar water penetration rates were observed in the TEOS-modified filter paper and unmodified (plain) filter paper. The validation of the developed µPADs was performed by utilizing the rapid urease test as a model test system. The detection limit of

  15. Rapid method to detect duplex formation in sequencing by hybridization methods, a method for constructing containment structures for reagent interaction

    DOEpatents

    Mirzabekov, Andrei Darievich; Yershov, Gennadiy Moiseyevich; Guschin, Dmitry Yuryevich; Gemmell, Margaret Anne; Shick, Valentine V.; Proudnikov, Dmitri Y.; Timofeev, Edward N.

    2002-01-01

    A method for determining the existence of duplexes of oligonucleotide complementary molecules is provided whereby a plurality of immobilized oligonucleotide molecules, each of a specific length and each having a specific base sequence, is contacted with complementary, single stranded oligonucleotide molecules to form a duplex so as to facilitate intercalation of a fluorescent dye between the base planes of the duplex. The invention also provides for a method for constructing oligonucleotide matrices comprising confining light sensitive fluid to a surface, exposing said light-sensitive fluid to a light pattern so as to cause the fluid exposed to the light to polymerize into discrete units and adhere to the surface; and contacting each of the units with a set of different oligonucleotide molecules so as to allow the molecules to disperse into the units.

  16. A numerical method for generating rapidly rotating bipolytropic structures in equilibrium

    NASA Astrophysics Data System (ADS)

    Kadam, Kundan; Motl, Patrick M.; Frank, Juhan; Clayton, Geoffrey C.; Marcello, Dominic C.

    2016-10-01

    We demonstrate that rapidly rotating bipolytropic (composite polytropic) stars and toroidal discs can be obtained using Hachisu's self-consistent field technique. The core and the envelope in such a structure can have different polytropic indices and also different average molecular weights. The models converge for high T/|W| cases, where T is the kinetic energy and W is the gravitational energy of the system. The agreement between our numerical solutions with known analytical as well as previously calculated numerical results is excellent. We show that the uniform rotation lowers the maximum core mass fraction or the Schönberg-Chandrasekhar limit for a bipolytropic sequence. We also discuss the applications of this method to magnetic braking in low-mass stars with convective envelopes.

  17. Apparatus and method for rapid cooling of large area substrates in vacuum

    DOEpatents

    Barth, Kurt L.; Enzenroth, Robert A.; Sampath, Walajabad S.

    2012-11-06

    The present invention is directed to an apparatus and method for rapid cooling of a large substrate in a vacuum environment. A first cooled plate is brought into close proximity with one surface of a flat substrate. The spatial volume between the first cooling plate and the substrate is sealed and brought to a higher pressure than the surrounding vacuum level to increase the cooling efficiency. A second cooled plate is brought into close proximity with the opposite surface of the flat substrate. A second spatial volume between the second cooling plate and the substrate is sealed and the gas pressure is equalized to the gas pressure in the first spatial volume. The equalization of the gas pressure on both sides of the flat substrate eliminates deflection of the substrate and bending stress in the substrate.

  18. Apparatus and method for rapid cooling of large area substrates in vacuum

    DOEpatents

    Barth, Kurt L.; Enzenroth, Robert A.; Sampath, Walajabad S.

    2010-09-28

    The present invention is directed to an apparatus and method for rapid cooling of a large substrate in a vacuum environment. A first cooled plate is brought into close proximity with one surface of a flat substrate. The spatial volume between the first cooling plate and the substrate is sealed and brought to a higher pressure than the surrounding vacuum level to increase the cooling efficiency. A second cooled plate is brought into close proximity with the opposite surface of the flat substrate. A second spatial volume between the second cooling plate and the substrate is sealed and the gas pressure is equalized to the gas pressure in the first spatial volume. The equalization of the gas pressure on both sides of the flat substrate eliminates deflection of the substrate and bending stress in the substrate.

  19. A rapid non-destructive method for root dentin moisture measurements

    PubMed Central

    Komabayashi, Takashi; Zhu, Qiang; Jiang, Jin; Safavi, Kamran E.; Spångberg, Larz S.W.

    2009-01-01

    Dentin moisture content is important in adhesive bonding and structural strength research. However, there is no rapid method available to assess dentin moisture without sample destruction. This study examined the use of a digital grain moisture meter to measure root dentin moisture in vitro. Extracted mandibular single rooted teeth were sectioned at the CEJ. The moisture of the root dentin was measured at six measuring modes for different grains and repeated five times. Dentin weight changes before and after drying were measured to obtain control values. The control values were compared with machine readings. In conclusion, (1) Each non-destructive measurement took less than 30 seconds. (2) 24 hours storage at 37°C and 100 % humidity did not restore dentin moisture. (3) Five grain modes had a high validity, and could be used for dentin moisture measurements. PMID:19157921

  20. A rapid method for titrating baculovirus stocks using the Sf-9 Easy Titer cell line.

    PubMed

    Hopkins, Ralph; Esposito, Dominic

    2009-09-01

    A new rapid method for titrating baculovirus stocks has been developed using a novel cell line Sf-9 Easy Titer (Sf-9ET). The Sf-9ET cell line has been transfected with plasmid DNA containing the enhanced green fluorescent protein (eGFP) gene under the control of the baculovirus polyhedrin promoter. When used in the titration assay, the Sf-9ET cells turn green when they are infected with baculovirus due to the activation of the polyhedrin promoter/eGFP complex by baculovirus gene products expressed during the infection. Using a 96-well plate format end-point dilution assay, baculovirus titers can be determined in three days using a fluorescence microscope.

  1. Rapid and effective method of RNA isolation from green microalga Ankistrodesmus convolutus.

    PubMed

    Thanh, Tran; Omar, Hishamuddin; Abdullah, Mohd Puad; Chi, Vu Thi Quynh; Noroozi, Mostafa; Ky, Huynh; Napis, Suhaimi

    2009-10-01

    The rapid and effective method for the isolation of RNA from green microalga Ankistrodesmus convolutus based on homogenization in a simple CTAB buffer and selective precipitation of RNA with lithium chloride is developed. This procedure avoids the use of toxic chaotropic agents and phenol while high concentration of dithiothreitol is used to inhibit RNase activity and prevent oxidative cross-linking of nucleic acids by phenolics. The extraction procedure was able to produce high quality and intact RNA from A. convolutus. The yield of total RNA was 0.69-0.73 mg/g of fresh weight, with A(260)/A(280) ratio of 1.79-1.86. The obtained RNA was of sufficient quality and suitable for downstream application such as RT-PCR and cDNA library construction. The procedure may also have wider applicability for total RNA isolation from other green microalgae species.

  2. APols-aided protein precipitation: a rapid method for concentrating proteins for proteomic analysis.

    PubMed

    Ning, Zhibin; Hawley, Brett; Seebun, Deeptee; Figeys, Daniel

    2014-10-01

    Amphipols (APols) are a newly designed and milder class of detergent. They have been used primarily in protein structure analysis for membrane protein trapping and stabilization. We have recently demonstrated that APols can be used as an alternative detergent for proteome extraction and digestion, to achieve a "One-stop" single-tube workflow for proteomics. In this workflow, APols are removed by precipitation after protein digestion without depleting the digested peptides. Here, we took further advantage of this precipitation characteristic of APols to concentrate proteins from diluted samples. In contrast with tryptic peptides, a decrease in pH leads to the unbiased co-precipitation of APols with proteins, including globular hydrophilic proteins. We demonstrated that this precipitation is a combined effect of acid precipitation and the APols' protein interactions. Also, we have been able to demonstrate that APols-aided protein precipitation works well on diluted samples, such as secretome sample, and provides a rapid method for protein concentration.

  3. Radiometric Characteristics of Cassini RADAR Imagery

    NASA Astrophysics Data System (ADS)

    Stiles, B. W.; Gim, Y.; Hamilton, G. A.; Johnson, W. T.; Shimada, J. G.; West, R. D.

    2004-12-01

    The Cassini RADAR instrument on-board the Cassini Orbiter is currently being employed to obtain SAR imagery of the surface of Saturn's largest moon, Titan. The viewing geometry of Cassini RADAR is different from most imaging radars because the Cassini Orbiter flies by Titan rather than entering into orbit about it. This unusual viewing geometry leads to variable noise characteristics throughout the SAR swath. Due to large changes in range to target and number of looks, noise characteristics and effective resolution vary widely throughout the swath. A good understanding of these parameters is important in order to draw scientific conclusions from the SAR images. Changes in noise bias could be misinterpreted as changes in reflectivity from the surface. Changes in resolution or noise variance could be misinterpreted as changes in the heterogeneity of the surface. The purpose of this paper is to quantify noise variance, bias, and effective radiometric resolution throughout the SAR swath in order to aid scientists in interpreting the data. Of the three parameters, the easiest to model is noise bias which increases with the range to the target. Noise variance is more complicated. The thermal noise (SNR) contribution to the overall variance increases with range, but the fading (speckle) noise contribution varies inversely with number of looks and thus with range. Effective resolution becomes coarser as range increases, but cross track and along track resolution vary differently. Along track resolution varies continuously, but cross track resolution has a discontinuity at 1600 km altitude, due to a change in commanded bandwidth. This paper presents the equations governing the noise characteristics and effective resolution as well as providing pseudo-color images of each quantity in SAR image coordinates for the October 2004 Cassini RADAR observation of Titan. This work was performed at the Jet Propulsion Laboratory, California Institute of Technology under contract with

  4. Radiometric calibration of Landsat Thematic Mapper

    SciTech Connect

    Wukelic, G.E.; Gibbons, D.E.; Martucci, L.M.; Foote, H.P.

    1988-08-01

    Absolute calibration of satellite-acquired data is essential for quantification of scientific studies and a variety of image- processing applications. This paper describes a multiyear, on-orbit radiometric calibration of the Landsat Thematic Mapper (TM). Primary emphasis was placed on TM band 6 (thermal) calibration, but selected reflectance-band calibration measurements were also made. Twenty-five Landsat TM coverages were acquired, and included day, night, and seasonal scenes at several geographical locations. Concurrent with Landsat overpasses, thermal and reflectance field and local meteorological (surface and radiosonde) measurements were collected. At-satellite (uncorrected) radiances and temperatures for water and non-water land cover were compared to ground truth (GT) measurements after making adjustments for atmospheric (using LOWTRAN), mixed-pixel, and emissivity effects. Results indicate that for well-characterized water features, TM band 6 average corrected temperature determinations using local radiosonde data for atmospheric adjustments are within less than or equal to0.6/degree/C of GT temperature determinations. For non-water features, TM band 6 derived temperatures are within 1/degree/C of GT temperature determinations, if appropriate emissivity adjustments are made. Corrections using non-local radiosonde data resulted in errors as large as 12/degree/C. Corrections using the US Standard atmosphere gave temperature values within 1 to 2/degree/C of GT. The average uncertainty for field instruments was +-0.2/degree/C; average uncertainty for Landsat TM corrected temperature determinations was +-0.4/degree/C. A cross-calibration of TM band 6 and the Advanced Very High Resolution Radiometer (AVHRR) for a Landsat overpass gave similar temperature results. 15 refs., 3 figs., 5 tabs.

  5. Development of a rapid method for the detection of biological threats in water

    NASA Astrophysics Data System (ADS)

    Stratis-Cullum, Dimitra N.; Wade, Kellie L.; Pellegrino, Paul M.

    2005-11-01

    In this paper, progress towards the development of real-time sensing of chemical and biological threats in liquid samples will be presented. This overall goal of this work is to combine the selective, molecular recognition of nucleic acid aptamers with a rapid signal transduction using fluorescence resonance energy transfer (FRET) for a single step identify and detect approach. Of particular interest is the application to whole-cell target recognition of biologicals, such as environmental pathogens (e.g., Campylobacter jejuni), without requiring cell lysis or other complex protocols to access biochemical species internal to the organism. An aptamer staining protocol for whole cell targets is developed and applied to the investigation of aptamers against Campylobacter jejuni cells. A comparison of aptamer binding using this method with and without the primer regions utilized in the aptamer selection process is presented and the primer regions were found to have little impact on binding performance. C. jejuni aptamers exhibited strong binding as evidenced through the fluorescence images acquired and little to no background fluorescence was observed from non-specific binding of the streptavidin-dye conjugate used in the staining method. A thrombin targeted molecular aptamer beacon was also studied and a rapid analysis was demonstrated. A 10 nM sample of thrombin was distinguishable from the fluorescence baseline of the probe alone, when using a 40 nM aptamer probe concentration. The fluorescence intensity was found to increase until saturation of the aptamer probe was achieved. These results show promise for the development of single-step identification of whole-cell targets using an aptamer bioreceptor and fluorescence resonance energy transfer transduction signaling scheme.

  6. A rapid microbiological method for enumerating Escherichia coli from broiler chicken carcasses.

    PubMed

    Edmiston, A L; Russell, S M

    1998-10-01

    Experiments were conducted to evaluate a rapid method for enumerating Escherichia coli from broiler chicken carcasses. In three separate trials, carcasses were obtained from a commercial processing plant, temperature abused at 37 degrees C for 0, 3, 6, 9, or 12 h, and then rinsed. E. coli were enumerated from carcass rinses using Petrifilm E. coli count plates (PC) and by placing the rinse into double-strength colifiform medium supplemented with 2% dextrose (CMD). The CMD mixture was placed into a Bactometer module and conductance was measured at 44 degrees C. Once a detection time (DT) was recorded, the sample was immediately recovered from the module well, diluted, and spread onto plate count agar. Colonies on plates at the highest dilution from each module well were randomly selected and identified. After 0, 3, 6, 9, and 12 h of temperature abuse, E. coli was the bacterial species identified 97, 92, 88, 87, and 61% of the time, respectively. These results indicate that the medium/temperature combination was excellent for enumerating E. coli from samples that contain mixed microflora using conductance. Significant linear correlations were observed between time of abuse (TA) and log10 PC (LPC) or DT (R2 = 0.86 and R2 = -0.90, respectively). A significant linear correlation was observed between LPC and DT (R2 = -0.92). This rapid method (1 to 7.6 h) for enumeration of E. coli on chicken should provide a way to determine E. coli levels before a product is shipped, and it should aid the poultry industry in meeting the E. coli testing requirement of the U.S. Department of Agriculture Food Safety and Inspection Service pathogen reduction regulation.

  7. Use of predictive models and rapid methods to nowcast bacteria levels at coastal beaches

    USGS Publications Warehouse

    Francy, D.S.

    2009-01-01

    The need for rapid assessments of recreational water quality to better protect public health is well accepted throughout the research and regulatory communities. Rapid analytical methods, such as quantitative polymerase chain reaction (qPCR) and immunomagnetic separation/adenosine triphosphate (ATP) analysis, are being tested but are not yet ready for widespread use. Another solution is the use of predictive models, wherein variable(s) that are easily and quickly measured are surrogates for concentrations of fecal-indicator bacteria. Rainfall-based alerts, the simplest type of model, have been used by several communities for a number of years. Deterministic models use mathematical representations of the processes that affect bacteria concentrations; this type of model is being used for beach-closure decisions at one location in the USA. Multivariable statistical models are being developed and tested in many areas of the USA; however, they are only used in three areas of the Great Lakes to aid in notifications of beach advisories or closings. These "operational" statistical models can result in more accurate assessments of recreational water quality than use of the previous day's Escherichia coli (E. coli) concentration as determined by traditional culture methods. The Ohio Nowcast, at Huntington Beach, Bay Village, Ohio, is described in this paper as an example of an operational statistical model. Because predictive modeling is a dynamic process, water-resource managers continue to collect additional data to improve the predictive ability of the nowcast and expand the nowcast to other Ohio beaches and a recreational river. Although predictive models have been shown to work well at some beaches and are becoming more widely accepted, implementation in many areas is limited by funding, lack of coordinated technical leadership, and lack of supporting epidemiological data. ?? 2009 AEHMS.

  8. Rapid Estimation of TPH Reduction in Oil-Contaminated Soils Using the MED Method

    SciTech Connect

    Edenborn, H.M.; Zenone, V.A.

    2007-09-01

    Oil-contaminated soil and sludge generated during federal well plugging activities in northwestern Pennsylvania are currently remediated on small landfarm sites in lieu of more expensive landfill disposal. Bioremediation success at these sites in the past has been gauged by the decrease in total petroleum hydrocarbon (TPH) concentrations to less than 10,000 mg/kg measured using EPA Method 418.1. We tested the “molarity of ethanol droplet” (MED) water repellency test as a rapid indicator of TPH concentration in soil at one landfarm near Bradford, PA. MED was estimated by determining the minimum ethanol concentration (0 – 6 M) required to penetrate air-dried and sieved soil samples within 10 sec. TPH in soil was analyzed by rapid fluorometric analysis of methanol soil extracts, which correlated well with EPA Method 1664. Uncontaminated landfarm site soil amended with increasing concentrations of waste oil sludge showed a high correlation between MED and TPH. MED values exceeded the upper limit of 6 M as TPH estimates exceed ca. 25,000 mg/kg. MED and TPH at the land farm were sampled monthly during summer months over two years in a grid pattern that allowed spatial comparisons of site remediation effectiveness. MED and TPH decreased at a constant rate over time and remained highly correlated. Inexpensive alternatives to reagent-grade ethanol gave comparable results. The simple MED approach served as an inexpensive alternative to the routine laboratory analysis of TPH during the monitoring of oily waste bioremediation at this landfarm site.

  9. [Rapid detection of extended-spectrum beta-lactamases by flow cytometry method].

    PubMed

    Duyan, Serhat; Kılıç, Abdullah; Yılmaz, Soner; Ardıç, Nurittin

    2015-10-01

    Extended-spectrum beta-lactamases (ESBL), produced by Enterobacteriaceae members are enzymes that especially cause a resistance to cephalosporin group antibiotics commonly used in clinics. Early and rapid detection of ESBL production is crucial for antimicrobial treatment and infection control; however the methods used for this purpose are time consuming (24 to 48 hours). The aim of this study was to determine a flow cytometry based-test which provides to detect ESBL producing bacteria in a short time. A total of 38 ESBL-producing (29 Escherichia coli, 9 Klebsiella pneumoniae) and 10 non-producing (5 E.coli, 5 K.pneumoniae) Enterobacteriaceae strains isolated between 2012 and 2013 were included in this study. The identification and antibiotic susceptibility tests of the isolates were performed by using Phoenix(TM) 100 automated system (Becton Dickinson, USA). The presence of bla(TEM), bla(SHV), bla(CTX-M1), bla(CTX-M2) and bla(CTX-M9) genes were investigated in ESBL positive isolates via polymerase chain reaction method. At least one of the ESBL genes were detected in 36 out of 38 isolates and no genes were detected in two E.coli isolates. In flow cytometric method, the percentages of death cells exposed to cephalosporin [(ceftazidime (CAZ) or cefotaxime (CTX)] and clavulanic acid (CLA) combination, were compared with death cells exposed only to cephalosporin (CAZ or CTX). CLA index values (CAZ-CLA and CTX-CLA indices) were obtained for CTX and CAZ. Index values which was higher than 1.5 just for one cephalosporin were accepted as GSBL positive. The mean index values for CTX-CLA in ESBL positive strains according to their genotypic characteristics were between 1.14 and 7.22, while those values for CAZ-CLA were between 0.85 and 5.6. When the two groups of 38 ESBL positive and 10 ESBL negative strains were evaluated, statistically significant difference was detected for both CAZ-CLA and CTX-CLA indices (p< 0.005). CTX-CLA indices (p= 0.001) shown a better

  10. A method for rapid measurement of laser ablation rate of hard dental tissue

    NASA Astrophysics Data System (ADS)

    Perhavec, T.; Gorkič, A.; Bračun, D.; Diaci, J.

    2009-06-01

    The aim of the study reported here is the development of a new method which allows rapid and accurate in-vitro measurements of three-dimensional (3D) shape of laser ablated craters in hard dental tissues and the determination of crater volume, ablation rate and speed. The method is based on the optical triangulation principle. A laser sheet projector illuminates the surface of a tooth, mounted on a linear translation stage. As the tooth is moved by the translation stage a fast digital video camera captures series of images of the illuminated surface. The images are analyzed to determine a 3D model of the surface. Custom software is employed to analyze the 3D model and to determine the volume of the ablated craters. Key characteristics of the method are discussed as well as some practical aspects pertinent to its use. The method has been employed in an in-vitro study to examine the ablation rates and speeds of the two main laser types currently employed in dentistry, Er:YAG and Er,Cr:YSGG. Ten samples of extracted human molar teeth were irradiated with laser pulse energies from 80 mJ to the maximum available energy (970 mJ with the Er:YAG, and 260 mJ with the Er,Cr:YSGG). About 2000 images of each ablated tooth surface have been acquired along a translation range of 10 mm, taking about 10 s and providing close to 1 million surface measurement points. Volumes of 170 ablated craters (half of them in dentine and the other half in enamel) were determined from this data and used to examine the ablated volume per pulse energy and ablation speed. The results show that, under the same conditions, the ablated volume per pulse energy achieved by the Er:YAG laser exceeds that of the Er,Cr:YSGG laser in almost all regimes for dentine and enamel. The maximum Er:YAG laser ablation speeds (1.2 mm 3/s in dentine and 0.7 mm 3/s in enamel) exceed those obtained by the Er,Cr:YSGG laser (0.39 mm 3/s in dentine and 0.12 mm 3/s in enamel). Since the presented method proves to be easy to

  11. An Inexpensive and Rapid Method for Preparing Thin-Layer Chromatography Plates for Use in the Classroom

    ERIC Educational Resources Information Center

    Sparrow, Susan; Rumsby, M. G.

    1976-01-01

    Describes a method in which glass plates are coated with adsorbent, using a technique which is cheap, rapid, and reliable; avoids the need for expensive, commercially-available thin layer chromatography equipment. (MLH)

  12. Rapid methods for extracting and quantifying phenolic compounds in citrus rinds.

    PubMed

    Magwaza, Lembe Samukelo; Opara, Umezuruike Linus; Cronje, Paul J R; Landahl, Sandra; Ortiz, Jose Ordaz; Terry, Leon A

    2016-01-01

    Conventional methods for extracting and quantifying phenolic compounds in citrus rinds are time consuming. Rapid methods for extracting and quantifying phenolic compounds were developed by comparing three extraction solvent combinations (80:20 v/v ethanol:H2O; 70:29.5:0.5 v/v/v methanol:H2O:HCl; and 50:50 v/v dimethyl sulfoxide (DMSO):methanol) for effectiveness. Freeze-dried, rind powder was extracted in an ultrasonic water bath at 35°C for 10, 20, and 30 min. Phenolic compound quantification was done with a high-performance liquid chromatography (HPLC) equipped with diode array detector. Extracting with methanol:H2O:HCl for 30 min resulted in the optimum yield of targeted phenolic acids. Seven phenolic acids and three flavanone glycosides (FGs) were quantified. The dominant phenolic compound was hesperidin, with concentrations ranging from 7500 to 32,000 μg/g DW. The highest yield of FGs was observed in samples extracted, using DMSO:methanol for 10 min. Compared to other extraction methods, methanol:H2O:HCl was efficient in optimum extraction of phenolic acids. The limit of detection and quantification for all analytes were small, ranging from 1.35 to 5.02 and 4.51 to 16.72 μg/g DW, respectively, demonstrating HPLC quantification method sensitivity. The extraction and quantification methods developed in this study are faster and more efficient. Where speed and effectiveness are required, these methods are recommended. PMID:26788305

  13. A rapid and efficient method for assessing pathogenicity of ustilago maydis on maize and teosinte lines.

    PubMed

    Chavan, Suchitra; Smith, Shavannor M

    2014-01-03

    Maize is a major cereal crop worldwide. However, susceptibility to biotrophic pathogens is the primary constraint to increasing productivity. U. maydis is a biotrophic fungal pathogen and the causal agent of corn smut on maize. This disease is responsible for significant yield losses of approximately $1.0 billion annually in the U.S.(1) Several methods including crop rotation, fungicide application and seed treatments are currently used to control corn smut(2). However, host resistance is the only practical method for managing corn smut. Identification of crop plants including maize, wheat, and rice that are resistant to various biotrophic pathogens has significantly decreased yield losses annually(3-5). Therefore, the use of a pathogen inoculation method that efficiently and reproducibly delivers the pathogen in between the plant leaves, would facilitate the rapid identification of maize lines that are resistant to U. maydis. As, a first step toward indentifying maize lines that are resistant to U. maydis, a needle injection inoculation method and a resistance reaction screening method was utilized to inoculate maize, teosinte, and maize x teosinte introgression lines with a U. maydis strain and to select resistant plants. Maize, teosinte and maize x teosinte introgression lines, consisting of about 700 plants, were planted, inoculated with a strain of U. maydis, and screened for resistance. The inoculation and screening methods successfully identified three teosinte lines resistant to U. maydis. Here a detailed needle injection inoculation and resistance reaction screening protocol for maize, teosinte, and maize x teosinte introgression lines is presented. This study demonstrates that needle injection inoculation is an invaluable tool in agriculture that can efficiently deliver U. maydis in between the plant leaves and has provided plant lines that are resistant to U. maydis that can now be combined and tested in breeding programs for improved disease resistance.

  14. High accuracy in situ radiometric mapping.

    PubMed

    Tyler, Andrew N

    2004-01-01

    In situ and airborne gamma ray spectrometry have been shown to provide rapid and spatially representative estimates of environmental radioactivity across a range of landscapes. However, one of the principal limitations of this technique has been the influence of changes in the vertical distribution of the source (e.g. 137Cs) on the observed photon fluence resulting in a significant reduction in the accuracy of the in situ activity measurement. A flexible approach for single gamma photon emitting radionuclides is presented, which relies on the quantification of forward scattering (or valley region between the full energy peak and Compton edge) within the gamma ray spectrum to compensate for changes in the 137Cs vertical activity distribution. This novel in situ method lends itself to the mapping of activity concentrations in environments that exhibit systematic changes in the vertical activity distribution. The robustness of this approach has been demonstrated in a salt marsh environment on the Solway coast, SW Scotland, with both a 7.6 cm x 7.6 cm NaI(Tl) detector and a 35% n-type HPGe detector. Application to ploughed field environments has also been demonstrated using HPGe detector, including its application to the estimation of field moist bulk density and soil erosion measurement. Ongoing research work is also outlined.

  15. An Empirical Approach to Ocean Color Data: Reducing Bias and the Need for Post-Launch Radiometric Re-Calibration

    NASA Technical Reports Server (NTRS)

    Gregg, Watson W.; Casey, Nancy W.; O'Reilly, John E.; Esaias, Wayne E.

    2009-01-01

    A new empirical approach is developed for ocean color remote sensing. Called the Empirical Satellite Radiance-In situ Data (ESRID) algorithm, the approach uses relationships between satellite water-leaving radiances and in situ data after full processing, i.e., at Level-3, to improve estimates of surface variables while relaxing requirements on post-launch radiometric re-calibration. The approach is evaluated using SeaWiFS chlorophyll, which is the longest time series of the most widely used ocean color geophysical product. The results suggest that ESRID 1) drastically reduces the bias of ocean chlorophyll, most impressively in coastal regions, 2) modestly improves the uncertainty, and 3) reduces the sensitivity of global annual median chlorophyll to changes in radiometric re-calibration. Simulated calibration errors of 1% or less produce small changes in global median chlorophyll (less than 2.7%). In contrast, the standard NASA algorithm set is highly sensitive to radiometric calibration: similar 1% calibration errors produce changes in global median chlorophyll up to nearly 25%. We show that 0.1% radiometric calibration error (about 1% in water-leaving radiance) is needed to prevent radiometric calibration errors from changing global annual median chlorophyll more than the maximum interannual variability observed in the SeaWiFS 9-year record (+/- 3%), using the standard method. This is much more stringent than the goal for SeaWiFS of 5% uncertainty for water leaving radiance. The results suggest ocean color programs might consider less emphasis of expensive efforts to improve post-launch radiometric re-calibration in favor of increased efforts to characterize in situ observations of ocean surface geophysical products. Although the results here are focused on chlorophyll, in principle the approach described by ESRID can be applied to any surface variable potentially observable by visible remote sensing.

  16. A rapid and efficient electroporation method for transformation of Halomonas sp. O-1.

    PubMed

    Harris, Joshua R; Lundgren, Benjamin R; Grzeskowiak, Brian R; Mizuno, Kouhei; Nomura, Christopher T

    2016-10-01

    Halomonas sp. O-1 is a halophilic bacterium with a high potential for industrial application due to its natural ability to produce polyhydroxyalkanoates (PHAs) using seawater-based media. However, a major barrier preventing industrial scale implementation of this organism is a lack of molecular methodologies capable of readily transforming members of the Halomonas genus. Currently, the only reliable method used for introducing DNA into Halomonas spp. is bacterial conjugation, a somewhat tedious and time-consuming technique compared to electroporation-based methodologies. Here we describe a rapid and reproducible method for the electroporation of Halomonas sp. O-1 with plasmid DNA. Electrocompetent cells were generated by growing Halomonas sp. O-1 in a yeast extract-tryptone medium with a final salinity of 3.5%, pH of 7.5, followed by several washes using 300mM sucrose. Results show that plasmids containing chloramphenicol (Cm(R)) and gentamicin (Gm(R)) resistance cassettes are suitable antibiotic selection markers for transformation and yields of 10(4) transformants per μg of DNA were obtained. This method is simple to perform and the materials used are readily available in most research labs. Additionally, this plasmid-based transformation procedure has the potential to be adapted for a number of applications including the creation of recombinant stains and the generation of deletion mutants of Halomonas spp. PMID:27542998

  17. A Fluorescence-Based Method for Rapid and Direct Determination of Polybrominated Diphenyl Ethers in Water

    PubMed Central

    Shan, Huimei; Ma, Teng; Shang, Jianying; Pan, Duoqiang

    2015-01-01

    A new method was developed for rapid and direct measurement of polybrominated diphenyl ethers (PBDEs) in aqueous samples using fluorescence spectroscopy. The fluorescence spectra of tri- to deca-BDE (BDE 28, 47, 99, 153, 190, and 209) commonly found in environment were measured at variable emission and excitation wavelengths. The results revealed that the PBDEs have distinct fluorescence spectral profiles and peak positions that can be exploited to identify these species and determine their concentrations in aqueous solutions. The detection limits as determined in deionized water spiked with PBDEs are 1.71–5.82 ng/L for BDE 28, BDE 47, BDE 190, and BDE 209 and 45.55–69.95 ng/L for BDE 99 and BDE 153. The effects of environmental variables including pH, humic substance, and groundwater chemical composition on PBDEs measurements were also investigated. These environmental variables affected fluorescence intensity, but their effect can be corrected through linear additivity and separation of spectral signal contribution. Compared with conventional GC-based analytical methods, the fluorescence spectroscopy method is more efficient as it only uses a small amount of samples (2–4 mL), avoids lengthy complicated concentration and extraction steps, and has a low detection limit of a few ng/L. PMID:25705548

  18. Rapid Method for the Determination of the Stable Oxygen Isotope Ratio of Water in Alcoholic Beverages.

    PubMed

    Wang, Daobing; Zhong, Qiding; Li, Guohui; Huang, Zhanbin

    2015-10-28

    This paper demonstrates the first successful application of an online pyrolysis technique for the direct determination of oxygen isotope ratios (δ(18)O) of water in alcoholic beverages. Similar water concentrations in each sample were achieved by adjustment with absolute ethyl alcohol, and then a fixed GC split ratio can be used. All of the organic ingredients were successfully separated from the analyte on a CP-PoraBond Q column and subsequently vented out, whereas water molecules were transferred into the reaction furnace and converted to CO. With the system presented, 15-30 μL of raw sample was diluted and can be analyzed repeatedly; the analytical precision was better than 0.4‰ (n = 5) in all cases, and more than 50 injections can be made per day. No apparent memory effect was observed even if water samples were injected using the same syringe; a strong correlation (R(2) = 0.9998) was found between the water δ(18)O of measured sample and that of working standards. There was no significant difference (p > 0.05) between the mean δ(18)O value and that obtained by the traditional method (CO2-water equilibration/isotope ratio mass spectrometry) and the newly developed method in this study. The advantages of this new method are its rapidity and straightforwardness, and less test portion is required.

  19. Preparation and characterization of guluronic acid oligosaccharides degraded by a rapid microwave irradiation method.

    PubMed

    Hu, Ting; Li, Chunxia; Zhao, Xia; Li, Guangsheng; Yu, Guangli; Guan, Huashi

    2013-05-24

    Guluronic acid oligosaccharides (GOS) with degree of polymerization (DP) ranging from 1 to 10 were prepared by a rapid microwave degradation method. Polyguluronic acid, fractionated from alginate hydrolysate, was dissolved in dilute ammonia water at a concentration of 20 mg/mL (pH 5) and then hydrolyzed under microwave irradiation (1600 W) at 130°C for 15 min to produce GOS mixture. The GOS mixture was separated by a Bio-Gel P6 column and ten fractions were obtained. Each GOS fraction was further characterized by electrospray ionization mass spectrometry, (1)H NMR, (13)C NMR, and 2D NMR spectroscopy techniques. The data showed that the GOS fractions were saturated oligoguluronates with general molecular formula C(6n)H(8n+2)O(6n+1) (n=1-10). This microwave degradation method was not only convenient, less time consuming, and environment-friendly, but also produced GOS with high yield (71%) and eliminating a desalting procedure compared to conventional acid hydrolysis method. PMID:23584235

  20. A fluorescence-based method for rapid and direct determination of polybrominated diphenyl ethers in water

    SciTech Connect

    Shan, Huimei; Liu, Chongxuan; Wang, Zheming; Ma, Teng; Shang, Jianying; Pan, Duoqiang

    2015-01-01

    A new method was developed for rapid and direct measurement of polybrominated diphenyl ethers (PBDEs) in aqueous samples using fluorescence spectroscopy. The fluorescence spectra of tri- to deca-BDE (BDE 28, 47, 99, 153, 190, and 209) commonly found in environment were measured at variable emission and excitation wavelengths. The results revealed that the PBDEs have distinct fluorescence spectral profiles and peak positions that can be exploited to identify these species and determine their concentrations in aqueous solutions. The detection limits as determined in deionized water spiked with PBDEs are 1.71-5.82 ng/L for BDE 28, BDE 47, BDE 190, and BDE 209 and 45.55–69.95 ng/L for BDE 99 and BDE 153. The effects of environmental variables including pH, humic substance, and groundwater chemical composition on PBDEs measurements were also investigated. These environmental variables affected fluorescence intensity, but their effect can be corrected through linear additivity and separation of spectral signal contribution. Compared with conventional GC-based analytical methods, the fluorescence spectroscopy method is more efficient as it only uses a small amount of samples (2-4 mL), avoids lengthy complicated concentration and extraction steps, and has a low detection limit of a few ng/L.