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Sample records for real-time fluorescence measurement

  1. Real-time focus and overlay measurement by the use of fluorescent markers

    NASA Astrophysics Data System (ADS)

    Maas, Diederik; van Zwet, Erwin

    2014-04-01

    In lithography, overlay control is getting increasingly complex. Advanced Process Control (APC) is introduced to minimize excursions from the process window for the present exposure. APC uses metrology data of previously exposed wafers, hence, there is always a delay of tens of minutes before the required information is available. This paper proposes the combination of a patterned expose beam and a patterned fluorescent marker on a wafer to generate a fluorescent signal that carries real-time information of the focus and/or position error of the expose pattern with the pattern on the wafer. A practical realization requires some changes to the exposure process, stepper design and reticle lay-out. Firstly, a matched pair of markers on the wafer and reticle is required. Secondly, the generated fluorescent signal must be measured, for example with a (spectrally filtered) photon counter close to the expose area of the wafer. At last, the markers from the previous lithography step shall, after development, be filled with fluorescent material. This deposition requires an additional process step. Photon budget calculations suggest an overlay measurement accuracy of less than a tenth of a nm (real-time).

  2. Real-time quantitative fluorescence measurement of microscale cell culture analog systems

    NASA Astrophysics Data System (ADS)

    Oh, Taek-il; Kim, Donghyun; Tatosian, Daniel; Sung, Jong Hwan; Shuler, Michael

    2007-02-01

    A microscale cell culture analog (μCCA) is a cell-based lab-on-a-chip assay that, as an animal surrogate, is applied to pharmacological studies for toxicology tests. A μCCA typically comprises multiple chambers and microfluidics that connect the chambers, which represent animal organs and blood flow to mimic animal metabolism more realistically. A μCCA is expected to provide a tool for high-throughput drug discovery. Previously, a portable fluorescence detection system was investigated for a single μCCA device in real-time. In this study, we present a fluorescence-based imaging system that provides quantitative real-time data of the metabolic interactions in μCCAs with an emphasis on measuring multiple μCCA samples simultaneously for high-throughput screening. The detection system is based on discrete optics components, with a high-power LED and a charge-coupled device (CCD) camera as a light source and a detector, for monitoring cellular status on the chambers of each μCCA sample. Multiple samples are characterized mechanically on a motorized linear stage, which is fully-automated. Each μCCA sample has four chambers, where cell lines MES-SA/DX- 5, and MES-SA (tumor cells of human uterus) have been cultured. All cell-lines have been transfected to express the fusion protein H2B-GFP, which is a human histone protein fused at the amino terminus to EGFP. As a model cytotoxic drug, 10 μM doxorubicin (DOX) was used. Real-time quantitative data of the intensity loss of enhanced green fluorescent protein (EGFP) during cell death of target cells have been collected over several minutes to 40 hours. Design issues and improvements are also discussed.

  3. Real-Time Visualization of Tissue Surface Biochemical Features Derived From Fluorescence Lifetime Measurements.

    PubMed

    Gorpas, Dimitris; Ma, Dinglong; Bec, Julien; Yankelevich, Diego R; Marcu, Laura

    2016-08-01

    Fiber based fluorescence lifetime imaging has shown great potential for intraoperative diagnosis and guidance of surgical procedures. Here we describe a novel method addressing a significant challenge for the practical implementation of this technique, i.e., the real-time display of the quantified biochemical or functional tissue properties superimposed on the interrogated area. Specifically, an aiming beam (450 nm) generated by a continuous-wave laser beam was merged with the pulsed fluorescence excitation light in a single delivery/collection fiber and then imaged and segmented using a color-based algorithm. We demonstrate that this approach enables continuous delineation of the interrogated location and dynamic augmentation of the acquired frames with the corresponding fluorescence decay parameters. The method was evaluated on a fluorescence phantom and fresh tissue samples. Current results demonstrate that 34 frames per second can be achieved for augmenting videos of 640 × 512 pixels resolution. Also we show that the spatial resolution of the fluorescence lifetime map depends on the tissue optical properties, the scanning speed, and the frame rate. The dice similarity coefficient between the fluorescence phantom and the reconstructed maps was estimated to be as high as 93%. The reported method could become a valuable tool for augmenting the surgeon's field of view with diagnostic information derived from the analysis of fluorescence lifetime data in real-time using handheld, automated, or endoscopic scanning systems. Current method provides also a means for maintaining the tissue light exposure within safety limits. This study provides a framework for using an aiming beam with other point spectroscopy applications.

  4. Real-time smart fluorescence sensor platform

    NASA Astrophysics Data System (ADS)

    Dickens, Jason E.; Vaughn, Mike S.; Taylor, Mervin; Ponstingl, Mike

    2011-06-01

    A novel compact LED array based light induced fluorescence (LIF) sensor has been developed for real-time in-line monitoring of intrinsic fluorophores in the solid and liquid state. The sensor is essential for on-the-spot, routine, and cost effective real-time analysis. The sensor is designed to provide real-time emission response along with various smart sensing parameters to ensure real-time measurement quality that is required for regulated GMP process monitoring applications. This work describes a LIF sensor tailored for solid-phase fluorometry. Fundamental figures of merit, excitation overexposure and smart sensing features required for modern process monitoring and control are discussed within the context of pharmaceutical solid-phase manufacturing and similar applications.

  5. Ambient measurements of biological aerosol particles near Killarney, Ireland: a comparison between real-time fluorescence and microscopy techniques

    NASA Astrophysics Data System (ADS)

    Healy, D. A.; Huffman, J. A.; O'Connor, D. J.; Pöhlker, C.; Pöschl, U.; Sodeau, J. R.

    2014-02-01

    Primary biological aerosol particles (PBAP) can contribute significantly to the coarse particle burden in many environments, may thus influence climate and precipitation systems as cloud nuclei, and can spread disease to humans, animals, and plants. Measurements of PBAP in natural environments taken at high time- and size- resolution are, however, sparse and so large uncertainties remain in the role that biological particles play in the Earth system. In this study two commercial real-time fluorescence particle sensors and a Sporewatch single-stage particle impactor were operated continuously from 2 August to 2 September 2010 at a rural sampling location in Killarney National Park in south western Ireland. A cascade impactor was operated periodically to collect size-resolved particles during exemplary periods. Here we report the first ambient comparison of the waveband integrated bioaerosol sensor (WIBS-4) with the ultraviolet aerodynamic particle sizer (UV-APS) and also compare these real-time fluorescence techniques with results of fluorescence and optical microscopy of impacted samples. Both real-time instruments showed qualitatively similar behaviour, with increased fluorescent bioparticle concentrations at night when relative humidity was highest and temperature was lowest. The fluorescent particle number from the FL3 channel of the WIBS-4 and from the UV-APS were strongly correlated and dominated by a 3 μm mode in the particle size distribution. The WIBS FL2 channel exhibited particle modes at approx. 1 and 3 μm, and each were correlated with the concentration of fungal spores commonly observed in air samples collected at the site (ascospores, basidiospores, Ganoderma spp.). The WIBS FL1 channel exhibited variable multi-modal distributions turning into a broad featureless single mode after averaging and exhibited poor correlation with fungal spore concentrations, which may be due to the detection of bacterial and non-biological fluorescent particles

  6. Ambient measurements of biological aerosol particles near Killarney, Ireland: a comparison between real-time fluorescence and microscopy techniques

    NASA Astrophysics Data System (ADS)

    Healy, D. A.; Huffman, J. A.; O'Connor, D. J.; Pöhlker, C.; Pöschl, U.; Sodeau, J. R.

    2014-08-01

    Primary biological aerosol particles (PBAPs) can contribute significantly to the coarse particle burden in many environments. PBAPs can thus influence climate and precipitation systems as cloud nuclei and can spread disease to humans, animals, and plants. Measurement data and techniques for PBAPs in natural environments at high time- and size resolution are, however, sparse, and so large uncertainties remain in the role that biological particles play in the Earth system. In this study two commercial real-time fluorescence particle sensors and a Sporewatch single-stage particle impactor were operated continuously from 2 August to 2 September 2010 at a rural sampling location in Killarney National Park in southwestern Ireland. A cascade impactor was operated periodically to collect size-resolved particles during exemplary periods. Here we report the first ambient comparison of a waveband integrated bioaerosol sensor (WIBS-4) with a ultraviolet aerodynamic particle sizer (UV-APS) and also compare these real-time fluorescence techniques with results of fluorescence and optical microscopy of impacted samples. Both real-time instruments showed qualitatively similar behavior, with increased fluorescent bioparticle concentrations at night, when relative humidity was highest and temperature was lowest. The fluorescent particle number from the FL3 channel of the WIBS-4 and from the UV-APS were strongly correlated and dominated by a 3 μm mode in the particle size distribution. The WIBS FL2 channel exhibited particle modes at approx. 1 and 3 μm, and each was correlated with the concentration of fungal spores commonly observed in air samples collected at the site (ascospores, basidiospores, Ganoderma spp.). The WIBS FL1 channel exhibited variable multimodal distributions turning into a broad featureless single mode after averaging, and exhibited poor correlation with fungal spore concentrations, which may be due to the detection of bacterial and non-biological fluorescent

  7. Aerosol-fluorescence spectrum analyzer: real-time measurement of emission spectra of airborne biological particles

    NASA Astrophysics Data System (ADS)

    Hill, Steven C.; Pinnick, Ronald G.; Nachman, Paul; Chen, Gang; Chang, Richard K.; Mayo, Michael W.; Fernandez, Gilbert L.

    1995-10-01

    We have assembled an aerosol-fluorescence spectrum analyzer (AFS), which can measure the fluorescence spectra and elastic scattering of airborne particles as they flow through a laser beam. The aerosols traverse a scattering cell where they are illuminated with intense (50 kW/cm 2) light inside the cavity of an argon-ion laser operating at 488 nm. This AFS can obtain fluorescence spectra of individual dye-doped polystyrene microspheres as small as 0.5 mu m in diameter. The spectra obtained from microspheres doped with pink and green-yellow dyes are clearly different. We have also detected the fluorescence spectra of airborne particles (although not single particles) made from various

  8. Real-time detection and characterization of individual flowing airborne biological particles: fluorescence spectra and elastic scattering measurements

    NASA Astrophysics Data System (ADS)

    Pan, Yongle; Holler, Stephen; Chang, Richard K.; Hill, Steven C.; Pinnick, Ronald G.; Niles, Stanley; Bottiger, Jerold R.; Bronk, Burt V.

    1999-11-01

    Real-time methods which is reagentless and could detect and partially characterize bioaerosols are of current interest. We present a technique for real-time measurement of UV-excited fluorescence spectra and two-dimensional angular optical scattering (TAOS) from individual flowing biological aerosol particles. The fluorescence spectra have been observed from more than 20 samples including Bacillus subtilis, Escherichia coli, Erwinia herbicola, allergens, dust, and smoke. The S/N and resolution of the spectra are sufficient for observing small lineshape differences among the same type of bioaerosol prepared under different conditions. The additional information from TAOS regarding particle size, shape, and granularity has the potential of aiding in distinguishing bacterial aerosols from other aerosols, such as diesel and cigarette smoke.

  9. Real-Time Measurements of Actin Filament Polymerization by Total Internal Reflection Fluorescence Microscopy

    PubMed Central

    Kuhn, Jeffrey R.; Pollard, Thomas D.

    2005-01-01

    Understanding the mechanism of actin polymerization and its regulation by associated proteins requires an assay to monitor polymerization dynamics and filament topology simultaneously. The only assay meeting these criteria is total internal reflection fluorescence microscopy (Amann and Pollard, 2001; Fujiwara et al., 2002). The fluorescence signal is fourfold stronger with actin labeled on Cys-374 with Oregon green rather than rhodamine. To distinguish growth at barbed and pointed ends we used image drift correction and maximum intensity projections to reveal points where single N-ethylmaleimide inactivated myosins attach filaments to the glass coverslip. We estimated association rates at high actin concentrations and dissociation rates near and below the critical actin concentration. At the barbed end, the association rate constant for Mg-ATP-actin is 7.4 μM−1 s−1 and the dissociation rate constant is 0.89 s−1. At the pointed end the association and dissociation rate constants are 0.56 μM−1 s−1 and 0.19 s−1. When vitamin D binding protein sequesters all free monomers, ADP-actin dissociates from barbed ends at 1.4 s−1 and from pointed ends at 0.16 s−1 regardless of buffer nucleotide. PMID:15556992

  10. Real-time method and apparatus for measuring the temperature of a fluorescing phosphor

    DOEpatents

    Britton, Jr., Charles L.; Beshears, David L.; Simpson, Marc L.; Cates, Michael R.; Allison, Steve W.

    1999-01-01

    A method for determining the temperature of a fluorescing phosphor is provided, together with an apparatus for performing the method. The apparatus includes a photodetector for detecting light emitted by a phosphor irradiated with an excitation pulse and for converting the detected light into an electrical signal. The apparatus further includes a differentiator for differentiating the electrical signal and a zero-crossing discrimination circuit that outputs a pulse signal having a pulse width corresponding to the time period between the start of the excitation pulse and the time when the differentiated electrical signal reaches zero. The width of the output pulse signal is proportional to the decay-time constant of the phosphor.

  11. Tissue distribution and real-time fluorescence measurement of a tumor-targeted nanodevice by a two photon optical fiber fluorescence probe

    NASA Astrophysics Data System (ADS)

    Thomas, Thommey P.; Ye, Jing Yong; Yang, Chu-Sheng; Myaing, Monthiri; Majoros, Istvan J.; Kotlyar, Alina; Cao, Zhengyi; Norris, Theodore B.; Baker, James R., Jr.

    2006-02-01

    Real-time fluorescence measurement in deep tumors in live animals (or humans) by conventional methods has significant challenges. We have developed a two-photon optical fiber fluorescence (TPOFF) probe as a minimally invasive technique for quantifying fluorescence in solid tumors in live mice. Here we demonstrate TPOFF for real-time measurements of targeted drug delivery dynamics to tumors in live mice. 50-femtosecond laser pulses at 800 nm were coupled into a single mode optical fiber and delivered into the tumor through a 27-gauge needle. Fluorescence was collected back through the same fiber, filtered, and detected with photon counting. Biocompatible dendrimer-based nanoparticles were used for targeted delivery of fluorescent materials into tumors. Dendrimers with targeting agent folic acid and fluorescent reporter 6-TAMRA (G5-6T-FA) were synthesized. KB cell tumors expressing high levels of FA receptors were developed in SCID mice. We initially demonstrated the specific uptake of the targeted conjugates into tumor, kidney and liver, using the TPOFF probe. The tumor fluorescence was then taken in live mice at 30 min, 2 h and 24 h with the TPOFF probe. G5-6T-FA accumulated in the tumor with maximum mean levels reaching 673 +/- 67 nM at the 2 h time point. In contrast, the levels of a control, non-targeted conjugate (G5-6T) at 2 h reached a level of only 136 +/- 28 nM in tumors, and decrease quickly. This indicates that the TPOFF probe can be used as a minimally invasive detection system for quantifying the specific targeting of a fluorescent nanodevice on a real-time basis.

  12. Real-time fluorescence microscopy monitoring of porphyrin biodistribution

    NASA Astrophysics Data System (ADS)

    Kimel, Sol; Gottfried, Varda; Kunzi-Rapp, Karin; Akguen, Nermin; Schneckenburger, Herbert

    1996-01-01

    In vivo uptake of the natural porphyrins, uroporphyrin III (UP), coproporphyrin III (CP) and protoporphyrin IX (PP), was monitored by fluorescence microscopy. Experiments were performed using the chick chorioallantoic membrane (CAM) model, which allowed video documentation of fluorescence both in real time and after integration over a chosen time interval (usually 2 s). Sensitizers at a concentration of 50 (mu) M (100 (mu) L) were injected into a medium-sized vein (diameter approximately 40 micrometer) using an ultra-fine 10 micrometer diameter needle. Fluorescence images were quantitated by subtracting the fluorescence intensity of surrounding CAM tissue (Fmatrix) from the intravascular fluorescence intensity (Fintravascular), after transformation of the video frames into digital form. The differential fluorescence intensity, Fintravascular - Fmatrix, is a measure of the biodistribution. Real time measurements clearly showed that CP and UP fluorescence is associated with moving erythrocytes and not with endothelial cells of the vessel wall. Fluorescence intensity was monitored, up to 60 minutes after injection, by averaging the fluorescence over time intervals of 2 s and recording the integrated images. The fluorescence intensity reached its maximum in about 20 - 30 min after injection, presumably after monomerization inside erythrocyte membranes. The results are interpreted in terms of physical-chemical characteristics (e.g. hydrophilicity) and correlated with the photodynamically induced hemostasis in CAM blood vessels.

  13. Real-time method and apparatus for measuring the decay-time constant of a fluorescing phosphor

    DOEpatents

    Britton, Jr., Charles L.; Beshears, David L.; Simpson, Marc L.; Cates, Michael R.; Allison, Steve W.

    1999-01-01

    A method for determining the decay-time constant of a fluorescing phosphor is provided, together with an apparatus for performing the method. The apparatus includes a photodetector for detecting light emitted by a phosphor irradiated with an excitation pulse and for converting the detected light into an electrical signal. The apparatus further includes a differentiator for differentiating the electrical signal and a zero-crossing discrimination circuit that outputs a pulse signal having a pulse width corresponding to the time period between the start of the excitation pulse and the time when the differentiated electrical signal reaches zero. The width of the output pulse signal is proportional to the decay-time constant of the phosphor.

  14. Development of real time detector for fluorescent particles

    SciTech Connect

    Prevost, C.; Vendel, J.; Seigneur, A.

    1997-08-01

    Aerosols tagged by a fluorescent dye are a worthwhile tool within the framework of ventilation and filtration studies. The detection in real time of a specific particulate tracer allows characterization of ventilation behaviour such as air change rate, the determination of a good or bad mixing zone and transfer coefficient, or the determination of the decontamination factor for High Efficiency Particulate Air (HEPA) filters. Generally, these tests require specific aerosols in order to get rid of the atmospheric aerosol background. Until now the principle of fluorescent aerosol concentration measuring has only allowed an integral response with a time lag by means of sampling on filters and a fluorimetric analysis after specific conditioning of these filters. 5 refs., 13 figs.

  15. Effect of the gastrointestinal environment on pH homeostasis of Lactobacillus plantarum and Lactobacillus brevis cells as measured by real-time fluorescence ratio-imaging microscopy.

    PubMed

    Ramos, Cíntia Lacerda; Thorsen, Line; Ryssel, Mia; Nielsen, Dennis S; Siegumfeldt, Henrik; Schwan, Rosane Freitas; Jespersen, Lene

    2014-04-01

    In the present work, an in vitro model of the gastrointestinal tract (GIT) was developed to obtain real-time observations of the pH homeostasis of single cells of probiotic Lactobacillus spp. strains as a measure of their physiological state. Changes in the intracellular pH (pHi) were determined using fluorescence ratio imaging microscopy (FRIM) for potential probiotic strains of Lactobacillus plantarum UFLA CH3 and Lactobacillus brevis UFLA FFC199. Heterogeneous populations were observed, with pHi values ranging from 6.5 to 7.5, 3.5 to 5.6 and 6.5 to 8.0 or higher during passage of saliva (pH 6.4), gastric (pH 3.5) and intestinal juices (pH 6.4), respectively. When nutrients were added to gastric juice, the isolate L. brevis significantly decreased its pH(i) closer to the extracellular pH (pH(ex)) than in gastric juice without nutrients. This was not the case for L. plantarum. This study is the first to produce an in vitro GIT model enabling real-time monitoring of pH homeostasis of single cells in response to the wide range of pH(ex) of the GIT. Furthermore, it was possible to observe the heterogeneous response of single cells. The technique can be used to determine the survival and physiological conditions of potential probiotics and other microorganisms during passage through the GIT.

  16. Real-time absorption reduced surface fluorescence imaging

    PubMed Central

    Yang, Bin; Tunnell, James W.

    2014-01-01

    Abstract. We introduce a technique that limits absorption effects in fluorescence imaging and does not require extensive imaging processing, thus allowing for video rate imaging. The absorption minimization is achieved using spatial frequency domain imaging at a single high spatial frequency with standard three-phase demodulation. At a spatial frequency f=0.5  mm−1, we demonstrated in both in-vitro phantoms and ex-vivo tissue that the absorption can be significantly reduced. In the real-time implementation, we achieved a video rate of 19  frames/s. This technique has potential in cancer visualization and tumor margin detection. PMID:25250826

  17. Real-time absorption reduced surface fluorescence imaging.

    PubMed

    Yang, Bin; Tunnell, James W

    2014-09-01

    We introduce a technique that limits absorption effects in fluorescence imaging and does not require extensive imaging processing, thus allowing for video rate imaging. The absorption minimization is achieved using spatial frequency domain imaging at a single high spatial frequency with standard three-phase demodulation. At a spatial frequency f ¼ 0.5 mm−1, we demonstrated in both in-vitro phantoms and ex-vivo tissue that the absorption can be significantly reduced. In the real-time implementation, we achieved a video rate of 19 frames∕s. This technique has potential in cancer visualization and tumor margin detection. PMID:25250826

  18. Real time radiation measurements in space

    NASA Astrophysics Data System (ADS)

    Thomson, I.; Mackay, G.

    Radiation composed of energetic electrons, protons, photons, and galactic cosmic rays will be experienced by all space missions and may have effects on radiation sensitive electronic components and biological specimens. Radiation issues of interest to microgravity and biological experiments are discussed and the design of a new direct reading electronic radiation monitoring system is described. The proposed system consists of a radiation sensitive metal oxide semiconductor field effect transistor (MOSFET) specially designed to respond to ionizing radiation. On exposure to radiation, a permanent charge is stored in the MOSFET's insulating oxide, altering the device's electrical characteristics in a manner directly proportional to the dose exposed. A simple circuit reads the MOSFET's cumulative dose, making it possible to obtain real-time measurements and store the data or transfer the data to an earth station. Tests have shown that the MOSFET dosimeter shows a linear response up to at least 30,000 centiGray at a resolution of 0.1 centiGray. The MOSFET dosimetry system will be installed on the European Space Agency's ARTEP satellite scheduled for launch in November 1991.

  19. Fluorescent and Photostable Silicon Nanoparticles Sensors for Real-Time and Long-Term Intracellular pH Measurement in Live Cells.

    PubMed

    Chu, Binbin; Wang, Houyu; Song, Bin; Peng, Fei; Su, Yuanyuan; He, Yao

    2016-09-20

    Fluorescent sensors suitable for dynamic measurement of intracellular pH (pHi) fluctuations should feature the following properties: feeble cytotoxicity, wide-pH range response, and strong fluorescence coupled with good photostability, which are still remaining scanty to date. Herein, by functionalizing fluorescent silicon nanoparticles (SiNPs) with pH-sensitive dopamine (DA) and pH-insensitive rhodamine B isothiocyanate (RBITC), we present the first demonstration of fluorescent SiNPs-based sensors, simultaneously exhibiting minimal toxicity (cell viability of treated cells remains above 95% during 24-h treatment), sensitive fluorescent response to a broad pH range (∼4-10), and bright fluorescence coupled with robust photostability (∼9% loss of fluorescence intensity after 40 min continuous excitation; in contrast, fluorescence of Lyso-tracker is rapidly quenched in 5 min under the same experiment conditions). Taking advantage of these merits, we further employ the resultant fluorescent SiNPs sensors for the detection of lysosomal pH change mediated by nigericin in live HeLa and MCF-7 cells in long-term (e.g., 30 min) manners. Interestingly, two consecutive stages, i.e., alkalization lag phase and logarithmic growth phase, are observed based on recording the whole process of pH change, offering important information for understanding the dynamic process of pHi fluctuations.

  20. Kinetic Measurement and Real Time Visualization of Somatic Reprogramming.

    PubMed

    Quintanilla, Rene H; Asprer, Joanna; Sylakowski, Kyle; Lakshmipathy, Uma

    2016-07-30

    Somatic reprogramming has enabled the conversion of adult cells to induced pluripotent stem cells (iPSC) from diverse genetic backgrounds and disease phenotypes. Recent advances have identified more efficient and safe methods for introduction of reprogramming factors. However, there are few tools to monitor and track the progression of reprogramming. Current methods for monitoring reprogramming rely on the qualitative inspection of morphology or staining with stem cell-specific dyes and antibodies. Tools to dissect the progression of iPSC generation can help better understand the process under different conditions from diverse cell sources. This study presents key approaches for kinetic measurement of reprogramming progression using flow cytometry as well as real-time monitoring via imaging. To measure the kinetics of reprogramming, flow analysis was performed at discrete time points using antibodies against positive and negative pluripotent stem cell markers. The combination of real-time visualization and flow analysis enables the quantitative study of reprogramming at different stages and provides a more accurate comparison of different systems and methods. Real-time, image-based analysis was used for the continuous monitoring of fibroblasts as they are reprogrammed in a feeder-free medium system. The kinetics of colony formation was measured based on confluence in the phase contrast or fluorescence channels after staining with live alkaline phosphatase dye or antibodies against SSEA4 or TRA-1-60. The results indicated that measurement of confluence provides semi-quantitative metrics to monitor the progression of reprogramming.

  1. Kinetic Measurement and Real Time Visualization of Somatic Reprogramming.

    PubMed

    Quintanilla, Rene H; Asprer, Joanna; Sylakowski, Kyle; Lakshmipathy, Uma

    2016-01-01

    Somatic reprogramming has enabled the conversion of adult cells to induced pluripotent stem cells (iPSC) from diverse genetic backgrounds and disease phenotypes. Recent advances have identified more efficient and safe methods for introduction of reprogramming factors. However, there are few tools to monitor and track the progression of reprogramming. Current methods for monitoring reprogramming rely on the qualitative inspection of morphology or staining with stem cell-specific dyes and antibodies. Tools to dissect the progression of iPSC generation can help better understand the process under different conditions from diverse cell sources. This study presents key approaches for kinetic measurement of reprogramming progression using flow cytometry as well as real-time monitoring via imaging. To measure the kinetics of reprogramming, flow analysis was performed at discrete time points using antibodies against positive and negative pluripotent stem cell markers. The combination of real-time visualization and flow analysis enables the quantitative study of reprogramming at different stages and provides a more accurate comparison of different systems and methods. Real-time, image-based analysis was used for the continuous monitoring of fibroblasts as they are reprogrammed in a feeder-free medium system. The kinetics of colony formation was measured based on confluence in the phase contrast or fluorescence channels after staining with live alkaline phosphatase dye or antibodies against SSEA4 or TRA-1-60. The results indicated that measurement of confluence provides semi-quantitative metrics to monitor the progression of reprogramming. PMID:27500543

  2. High-power white LED-based system incorporating a CCD Offner imaging spectrometer for real-time fluorescence qPCR measurements

    NASA Astrophysics Data System (ADS)

    Alaruri, Sami D.

    2014-12-01

    An optical system for qPCR fluorescence measurements which incorporates high-power white LEDs, PMMA plastic lenses and an Offner multichannel (imaging) CCD-based spectrometer has been developed and validated. The optical system can detect twenty reaction vessels in an asynchronous manner and up to seven different fluorescent dyes (7 plex) at 1 nM dye concentrations in each of the reaction vessels. Furthermore, PCR curves obtained using the optical measurement system for a genomic deoxyribonucleic acid (DNA) template containing HEX and Texas Red fluorescent probes (fluorophores) are discussed. The spectral resolution, dynamic range and repeatability of the measurement system are < 15 nm, > 3 decades and < 1% CV, respectively.

  3. Continuous flow real-time PCR device using multi-channel fluorescence excitation and detection.

    PubMed

    Hatch, Andrew C; Ray, Tathagata; Lintecum, Kelly; Youngbull, Cody

    2014-02-01

    High throughput automation is greatly enhanced using techniques that employ conveyor belt strategies with un-interrupted streams of flow. We have developed a 'conveyor belt' analog for high throughput real-time quantitative Polymerase Chain Reaction (qPCR) using droplet emulsion technology. We developed a low power, portable device that employs LED and fiber optic fluorescence excitation in conjunction with a continuous flow thermal cycler to achieve multi-channel fluorescence detection for real-time fluorescence measurements. Continuously streaming fluid plugs or droplets pass through tubing wrapped around a two-temperature zone thermal block with each wrap of tubing fluorescently coupled to a 64-channel multi-anode PMT. This work demonstrates real-time qPCR of 0.1-10 μL droplets or fluid plugs over a range of 7 orders of magnitude concentration from 1 × 10(1) to 1 × 10(7). The real-time qPCR analysis allows dynamic range quantification as high as 1 × 10(7) copies per 10 μL reaction, with PCR efficiencies within the range of 90-110% based on serial dilution assays and a limit of detection of 10 copies per rxn. The combined functionality of continuous flow, low power thermal cycling, high throughput sample processing, and real-time qPCR improves the rates at which biological or environmental samples can be continuously sampled and analyzed. PMID:24297040

  4. Real-Time Imaging of Fluorescent Flagellar Filaments

    PubMed Central

    Turner, Linda; Ryu, William S.; Berg, Howard C.

    2000-01-01

    Bacteria swim by rotating flagellar filaments that are several micrometers long, but only about 20 nm in diameter. The filaments can exist in different polymorphic forms, having distinct values of curvature and twist. Rotation rates are on the order of 100 Hz. In the past, the motion of individual filaments has been visualized by dark-field or differential-interference-contrast microscopy, methods hampered by intense scattering from the cell body or shallow depth of field, respectively. We have found a simple procedure for fluorescently labeling cells and filaments that allows recording their motion in real time with an inexpensive video camera and an ordinary fluorescence microscope with mercury-arc or strobed laser illumination. We report our initial findings with cells of Escherichia coli. Tumbles (events that enable swimming cells to alter course) are remarkably varied. Not every filament on a cell needs to change its direction of rotation: different filaments can change directions at different times, and a tumble can result from the change in direction of only one. Polymorphic transformations tend to occur in the sequence normal, semicoiled, curly 1, with changes in the direction of movement of the cell body correlated with transformations to the semicoiled form. PMID:10781548

  5. Portable real-time fluorescence cytometry of microscale cell culture analog devices

    NASA Astrophysics Data System (ADS)

    Kim, Donghyun; Tatosian, Daniel A.; Shuler, Michael L.

    2006-02-01

    A portable fluorescence cytometric system that provides a modular platform for quantitative real-time image measurements has been used to explore the applicability to investigating cellular events on multiple time scales. For a short time scale, we investigated the real-time dynamics of uptake of daunorubicin, a chemotherapeutic agent, in cultured mouse L-cells in a micro cell culture analog compartment using the fluorescent cytometric system. The green fluorescent protein (GFP) expression to monitor induction of pre-specified genes, which occurs on a much longer time scale, has also been measured. Here GFP fluorescence from a doxycycline inducible promoter in a mouse L-cell line was determined. Additionally, a system based on inexpensive LEDs showed performance comparable to a broadband light source based system and reduced photobleaching compared to microscopic examination.

  6. Real-time point-of-care measurement of impaired renal function in a rat acute injury model employing exogenous fluorescent tracer agents

    NASA Astrophysics Data System (ADS)

    Dorshow, Richard B.; Fitch, Richard M.; Galen, Karen P.; Wojdyla, Jolette K.; Poreddy, Amruta R.; Freskos, John N.; Rajagopalan, Raghavan; Shieh, Jeng-Jong; Demirjian, Sevag G.

    2013-02-01

    Renal function assessment is needed for the detection of acute kidney injury and chronic kidney disease. Glomerular filtration rate (GFR) is now widely accepted as the best indicator of renal function, and current clinical guidelines advocate its use in the staging of kidney disease. The optimum measure of GFR is by the use of exogenous tracer agents. However current clinically employed agents lack sensitivity or are cumbersome to use. An exogenous GFR fluorescent tracer agent, whose elimination rate could be monitored noninvasively through skin would provide a substantial improvement over currently available methods. We developed a series of novel aminopyrazine analogs for use as exogenous fluorescent GFR tracer agents that emit light in the visible region for monitoring GFR noninvasively over skin. In rats, these compounds are eliminated by the kidney with urine recovery greater than 90% of injected dose, are not broken down or metabolized in vivo, are not secreted by the renal tubules, and have clearance values similar to a GFR reference compound, iothalamate. In addition, biological half-life of these compounds measured in rats by noninvasive optical methods correlated with plasma derived methods. In this study, we show that this noninvasive methodology with our novel fluorescent tracer agents can detect impaired renal function. A 5/6th nephrectomy rat model is employed.

  7. Superhilac real-time velocity measurements

    SciTech Connect

    Feinberg, B.; Meaney, D.; Thatcher, R.; Timossi, C.

    1987-03-01

    Phase probes have been placed in several external beam lines at the LBL heavy ion linear accelerator (SuperHILAC) to provide non-destructive velocity measurements independent of the ion being accelerated. The existing system has been improved to provide the following features: a display refresh rate better than twice per second, a sensitive pseudo-correlation technique to pick out the signal from the noise, simultaneous measurements of up to four ion velocities when more than one beam is being accelerated, and a touch-screen operator interface. These improvements allow the system to be used as a routine tuning aid and beam velocity monitor.

  8. Near real-time fluorescence detection of beryllium

    SciTech Connect

    McCleskey, T. M.; Ehler, D. S.; Minogue, E. M.; Collis, G. E.; Keizer, T. S.; Burrell, A. K.; Sauer, N. N.; John, K. D.

    2004-01-01

    We report on a fluorescent test for beryllium designed for analyzing swipes. The detection is rapid, quantitative and deployable in the field with $5,000 portable fluorimeter. Swipes are placed in a vial and a dilution solution is added. The vials are then rotated for 30 minutes and then syringe filtered. An aliquot of 100 pL is added to a detector solution and fluorescence measured with a portable ocean optics unit. We can readily detect down to 0.02 {micro}g on a filter paper. Interference studies have been carried out with various metals including Al, Fe, Pb, U, Ca, W, Ni, Co and Cu. The technique has proven to be successful under various conditions including a variety of surfaces both in the lab and in field. It is a user-friendly, cost effective method.

  9. Results of the first-in-human clinical trial for MB-102, a novel fluorescent tracer agent for real-time measurement of glomerular filtration rate

    NASA Astrophysics Data System (ADS)

    Dorshow, Richard B.; Debreczeny, Martin P.; Dowling, Thomas C.

    2015-03-01

    The fluorescent tracer agent 2,5-bis[N-(1-carboxy-2-hydroxy)]carbamoyl-3,6-diaminopyrazine, designated MB-102, has been developed with properties and attributes necessary for use as a direct measure of glomerular filtration rate (GFR). Comparison to known standard exogenous GFR agents in animal models has demonstrated an excellent correlation. A clinical trial to demonstrate this same correlation in humans is in progress. This clinical trial is the first in a series of trials necessary to obtain regulatory clearance from the FDA. We report herein the comparison of plasma pharmacokinetics between MB-102 and the known standard exogenous GFR agent Iohexol in healthy subjects with normal renal function. Post simultaneous administration of both agents, blood samples over a period of 12 hours were collected from each subject to assess pharmacokinetic parameters including GFR. Urine samples were collected over this same period to assess percent injected dose recovered in the urine. Results indicate MB-102 is a GFR agent in humans from the comparison to the standard agent.

  10. Real-time fluorescence ligase chain reaction for sensitive detection of single nucleotide polymorphism based on fluorescence resonance energy transfer.

    PubMed

    Sun, Yueying; Lu, Xiaohui; Su, Fengxia; Wang, Limei; Liu, Chenghui; Duan, Xinrui; Li, Zhengping

    2015-12-15

    Most of practical methods for detection of single nucleotide polymorphism (SNP) need at least two steps: amplification (usually by PCR) and detection of SNP by using the amplification products. Ligase chain reaction (LCR) can integrate the amplification and allele discrimination in one step. However, the detection of LCR products still remains a great challenge for highly sensitive and quantitative SNP detection. Herein, a simple but robust strategy for real-time fluorescence LCR has been developed for highly sensitive and quantitative SNP detection. A pair of LCR probes are firstly labeled with a fluorophore and a quencher, respectively. When the pair of LCR probes are ligated in LCR, the fluorophore will be brought close to the quencher, and thus, the fluorescence will be specifically quenched by fluorescence resonance energy transfer (FRET). The decrease of fluorescence intensity resulted from FRET can be real-time monitored in the LCR process. With the proposed real-time fluorescence LCR assay, 10 aM DNA targets or 100 pg genomic DNA can be accurately determined and as low as 0.1% mutant DNA can be detected in the presence of a large excess of wild-type DNA, indicating the high sensitivity and specificity. The real-time measuring does not require the detection step after LCR and gives a wide dynamic range for detection of DNA targets (from 10 aM to 1 pM). As LCR has been widely used for detection of SNP, DNA methylation, mRNA and microRNA, the real-time fluorescence LCR assay shows great potential for various genetic analysis.

  11. Estimating correlation for a real-time measure of connectivity.

    PubMed

    Arunkumar, Akhil; Panday, Ashish; Joshi, Bharat; Ravindran, Arun; Zaveri, Hitten P

    2012-01-01

    There has recently been considerable interest in connectivity analysis of fMRI and scalp and intracranial EEG time-series. The computational requirements of the pair-wise correlation (PWC), the core time-series measure used to estimate connectivity, presents a challenge to the real-time estimation of the PWC between all pairs of multiple time-series. We describe a parallel algorithm for computing PWC in real-time for streaming data from multiple channels. The algorithm was implemented on the Intel Xeon™ and IBM Cell Broadband Engine™ platforms. We evaluated time to estimate correlation for signals recorded with different acquisition parameters as a comparison to real-time constraints. We demonstrate that the execution time of these efficient implementations meet real-time constraints in most instances.

  12. Phosphorus, and nitrogen co-doped carbon dots as a fluorescent probe for real-time measurement of reactive oxygen and nitrogen species inside macrophages.

    PubMed

    Gong, Yunqian; Yu, Bin; Yang, Wen; Zhang, Xiaoling

    2016-05-15

    Phosphorus and nitrogen doped carbon dots (PN-CDs) were conveniently prepared by carbonization of adenosine-5'-triphosphate using a hydrothermal treatment. The PN-CDs with P/C atomic ratio of ca. 9.2/100 emit blue luminescence with high quantum yields of up to 23.5%. The PN-CDs were used as a novel sensing platform for live cell imaging of reactive oxygen species (ROS) and reactive nitrogen species (RNS), including ClO(-), ONOO(-), and NO in macrophages. The nanosensor design is based on our new finding that the strong fluorescence of the PN-CDs can be sensitively and selectively quenched by ROS and RNS both in vitro and in vivo. These results reveal that the PN-CDs can serve as a sensitive sensor for rapid imaging of ROS and RNS signaling with high selectivity and contrast.

  13. Real-time measurement of mental workload: A feasibility study

    NASA Technical Reports Server (NTRS)

    Kramer, Arthur; Humphrey, Darryl; Sirevaag, Erik; Mecklinger, Axel

    1990-01-01

    The primary goal of the study was to explore the utility of event-related brain potentials (ERP) as real-time measures of workload. To this end, subjects performed two different tasks both separately and together. One task required that subjects monitor a bank of constantly changing gauges and detect critical deviations. Difficulty was varied by changing the predictability of the gauges. The second task was mental arithmetic. Difficulty was varied by requiring subjects to perform operations on either two or three columns of numbers. Two conditions that could easily be distinguished on the basis of performance measures were selected for the real-time evaluation of ERPs. A bootstrapping approach was adopted in which one thousand samples of n trials (n = 1, 3, 5 ...65) were classified using several measures of P300 and Slow Wave amplitude. Classification accuracies of 85 percent were achieved with 25 trials. Results are discussed in terms of potential enhancements for real-time recording.

  14. Real-time Fluorescence Image-Guided Oncologic Surgery

    PubMed Central

    Mondal, Suman B.; Gao, Shengkui; Zhu, Nan; Liang, Rongguang; Gruev, Viktor; Achilefu, Samuel

    2014-01-01

    Medical imaging plays a critical role in cancer diagnosis and planning. Many of these patients rely on surgical intervention for curative outcomes. This requires a careful identification of the primary and microscopic tumors, and the complete removal of cancer. Although there have been efforts to adapt traditional imaging modalities for intraoperative image guidance, they suffer from several constraints such as large hardware footprint, high operation cost, and disruption of the surgical workflow. Because of the ease of image acquisition, relatively low cost devices and intuitive operation, optical imaging methods have received tremendous interests for use in real-time image-guided surgery. To improve imaging depth under low interference by tissue autofluorescence, many of these applications utilize light in the near-infra red (NIR) wavelengths, which is invisible to human eyes. With the availability of a wide selection of tumor-avid contrast agents, advancements in imaging sensors, electronic and optical designs, surgeons are able to combine different attributes of NIR optical imaging techniques to improve treatment outcomes. The emergence of diverse commercial and experimental image guidance systems, which are in various stages of clinical translation, attests to the potential high impact of intraoperative optical imaging methods to improve speed of oncologic surgery with high accuracy and minimal margin positivity. PMID:25287689

  15. Real-time structured light intraoral 3D measurement pipeline

    NASA Astrophysics Data System (ADS)

    Gheorghe, Radu; Tchouprakov, Andrei; Sokolov, Roman

    2013-02-01

    Computer aided design and manufacturing (CAD/CAM) is increasingly becoming a standard feature and service provided to patients in dentist offices and denture manufacturing laboratories. Although the quality of the tools and data has slowly improved in the last years, due to various surface measurement challenges, practical, accurate, invivo, real-time 3D high quality data acquisition and processing still needs improving. Advances in GPU computational power have allowed for achieving near real-time 3D intraoral in-vivo scanning of patient's teeth. We explore in this paper, from a real-time perspective, a hardware-software-GPU solution that addresses all the requirements mentioned before. Moreover we exemplify and quantify the hard and soft deadlines required by such a system and illustrate how they are supported in our implementation.

  16. Real-time measurements of jet aircraft engine exhaust.

    PubMed

    Rogers, Fred; Arnott, Pat; Zielinska, Barbara; Sagebiel, John; Kelly, Kerry E; Wagner, David; Lighty, JoAnn S; Sarofim, Adel F

    2005-05-01

    Particulate-phase exhaust properties from two different types of ground-based jet aircraft engines--high-thrust and turboshaft--were studied with real-time instruments on a portable pallet and additional time-integrated sampling devices. The real-time instruments successfully characterized rapidly changing particulate mass, light absorption, and polycyclic aromatic hydrocarbon (PAH) content. The integrated measurements included particulate-size distributions, PAH, and carbon concentrations for an entire test run (i.e., "run-integrated" measurements). In all cases, the particle-size distributions showed single modes peaking at 20-40nm diameter. Measurements of exhaust from high-thrust F404 engines showed relatively low-light absorption compared with exhaust from a turboshaft engine. Particulate-phase PAH measurements generally varied in phase with both net particulate mass and with light-absorbing particulate concentrations. Unexplained response behavior sometimes occurred with the real-time PAH analyzer, although on average the real-time and integrated PAH methods agreed within the same order of magnitude found in earlier investigations.

  17. Real-time measurements of jet aircraft engine exhaust.

    PubMed

    Rogers, Fred; Arnott, Pat; Zielinska, Barbara; Sagebiel, John; Kelly, Kerry E; Wagner, David; Lighty, JoAnn S; Sarofim, Adel F

    2005-05-01

    Particulate-phase exhaust properties from two different types of ground-based jet aircraft engines--high-thrust and turboshaft--were studied with real-time instruments on a portable pallet and additional time-integrated sampling devices. The real-time instruments successfully characterized rapidly changing particulate mass, light absorption, and polycyclic aromatic hydrocarbon (PAH) content. The integrated measurements included particulate-size distributions, PAH, and carbon concentrations for an entire test run (i.e., "run-integrated" measurements). In all cases, the particle-size distributions showed single modes peaking at 20-40nm diameter. Measurements of exhaust from high-thrust F404 engines showed relatively low-light absorption compared with exhaust from a turboshaft engine. Particulate-phase PAH measurements generally varied in phase with both net particulate mass and with light-absorbing particulate concentrations. Unexplained response behavior sometimes occurred with the real-time PAH analyzer, although on average the real-time and integrated PAH methods agreed within the same order of magnitude found in earlier investigations. PMID:15991667

  18. Real-time fluorescence imaging with 20 nm axial resolution

    PubMed Central

    Stabley, Daniel R.; Oh, Thomas; Simon, Sanford M.; Mattheyses, Alexa L.; Salaita, Khalid

    2015-01-01

    Measuring the nanoscale organization of protein structures near the plasma membrane of live cells is challenging, especially when the structure is dynamic. Here we present the development of a two-wavelength total internal reflection fluorescence method capable of real-time imaging of cellular structure height with nanometre resolution. The method employs a protein of interest tagged with two different fluorophores and imaged to obtain the ratio of emission in the two channels. We use this approach to visualize the nanoscale organization of microtubules and endocytosis of the epidermal growth factor receptor. PMID:26392382

  19. Real-time hostile attribution measurement and aggression in children.

    PubMed

    Yaros, Anna; Lochman, John E; Rosenbaum, Jill; Jimenez-Camargo, Luis Alberto

    2014-01-01

    Hostile attributions are an important predictor of aggression in children, but few studies have measured hostile attributions as they occur in real-time. The current study uses an interactive video racing game to measure hostile attributions while children played against a presumed peer. A sample of 75 children, ages 10-13, used nonverbal and verbal procedures to respond to ambiguous provocation by their opponent. Hostile attributions were significantly positively related to parent-rated reactive aggression, when controlling for proactive aggression. Hostile attributions using a nonverbal response procedure were negatively related to proactive aggression, when controlling for reactive aggression. Results suggest hostile attributions in real-time occur quickly and simultaneously with social interaction, which differs from the deliberative, controlled appraisals measured with vignette-based instruments. The relation between real-time hostile attributions and reactive aggression could be accounted for by the impulsive response style that is characteristic of reactive aggression, whereas children exhibiting proactive aggression may be more deliberate and intentional in their responding, resulting in a negative relation with real-time hostile attributions. These findings can be used both to identify children at risk for aggression and to enhance preventive interventions.

  20. Real-time precision concentration measurement for flowing liquid solutions

    NASA Astrophysics Data System (ADS)

    Krishna, V.; Fan, C. H.; Longtin, J. P.

    2000-10-01

    The precise, real-time measurement of liquid concentration is important in fundamental research, chemical analysis, mixing processes, and manufacturing, e.g., in the food and semiconductor industries. This work presents a laser-based, noninvasive technique to measure concentration changes of flowing liquids in real time. The essential components in the system include a 5 mW laser diode coupled to a single-mode optical fiber, a triangular optical cell, and a high-resolution beam position sensor. The instrument provides a large range of concentration measurement, typically 0%-100% for binary liquid mixtures, while providing a resolution on the order of 0.05% concentration or better. The experimental configuration is small, reliable, and inexpensive. Results are presented for NaCl and MgCl2 aqueous solutions with concentrations ranging from 0% to 25%, with very good agreement found between measured and true concentrations.

  1. Humic substances cause fluorescence inhibition in real-time polymerase chain reaction.

    PubMed

    Sidstedt, Maja; Jansson, Linda; Nilsson, Elin; Noppa, Laila; Forsman, Mats; Rådström, Peter; Hedman, Johannes

    2015-10-15

    Real-time polymerase chain reaction (qPCR) is the cornerstone of DNA analysis, enabling detection and quantification of minute nucleic acid amounts. However, PCR-based analysis is limited, in part, by the presence of inhibitors in the samples. PCR inhibition has been viewed solely as failure to efficiently generate amplicons, that is, amplification inhibition. Humic substances (HS) are well-known inhibitors of PCR amplification. Here we show that HS from environmental samples, specifically humic acid (HA), are very potent detection inhibitors, that is, quench the fluorescence signal of double-stranded DNA (dsDNA) binding dyes. HA quenched the fluorescence of the commonly used qPCR dyes EvaGreen, ResoLight, SYBR Green I, and SYTO 82, generating lowered amplification plots, although amplicon production was unaffected. For EvaGreen, 500 ng of HA quenched nearly all fluorescence, whereas 1000 ng of HA completely inhibited amplification when applying Immolase DNA polymerase with bovine serum albumin (BSA). Fluorescence spectroscopy measurements showed that HA quenching was either static or collisional and indicated that HA bound directly to the dye. Fulvic acid did not act as a qPCR detection inhibitor but inhibited amplification similarly to HA. Hydrolysis probe fluorescence was not quenched by HA. Detection inhibition is an overlooked phenomenon that needs to be considered to allow for development of optimal qPCR assays.

  2. Real-Time Dynamics Monitoring System with Synchronized Phasor Measurements

    2005-01-01

    The Real-Time Dynamics Monitoring System is designed to monitor the dynamics within the power grid and assess the system behavior during normal and disturbance conditions. The RTDMS application was built on the Grid-3P technology platform and takes real-time information collected by Synchronized Phasor Measurement Units (PMU5) or other collection devices and transmitted to a central Phasor Data Concentrator (PDC) for monitoring grid dynamics. The data is sampled 30 times per second and is time-synchronized. Thismore » data is processed to create graphical and geographical displays to provide visualization for frequency/frequency response, voltage magnitudes and angles, voltage angle differences across critical paths as well as real and reactive power-flows on a sub-second and second basis. Software allows for monitoring, tracking, historical data archiving and electric system troubleshooting for reliability management.« less

  3. Real-Time Depth Measurement In A Stereoscopic Television Display

    NASA Astrophysics Data System (ADS)

    Robinson, M.; Sood, S. C.

    1983-04-01

    A working prototype three-dimensional television display has been constructed and initial feasibility studies have been carried out. The system employs the time division technique which takes advantage of the interlace facility on the standard television display and incorporates electro-optic viewing spectacles for the observer. Improvements to the basic system have been carried out which include remotely triggered viewing spectacles, thus giving greater freedom of movement to the observer and also an increased switching rate to reduce the effects of flicker. It soon became apparent that a system containing an integral real time depth measurement facility would be attractive to potential users. The method used is the application of a photogrammetic technique to the display in order to provide a real time three dimensional viewing and depth measurement facility. Present available techniques involve processing a stereoscopic pair of photographs which introduces an obvious inherent time delay. For many applications a real time technique has advantages even though the depth resolution is unlikely to be as good as the standard photographic system.

  4. Real-time water and wastewater quality monitoring using LED-based fluorescence spectroscopy

    NASA Astrophysics Data System (ADS)

    Bridgeman, John; Zakharova, Yulia

    2016-04-01

    In recent years there have been a number of attempts to design and introduce into water management tools that are capable of measuring organic and microbial matter in real time and in situ. This is important, as the delivery of safe water to customers, and the discharge of good quality effluent to rivers are primary concerns to water undertakers. A novel, LED-based portable fluorimeter 'Duo Fluor' has been designed and constructed at the University of Birmingham to monitor the quality of (waste)water continuously and in real time, and its performance has been assessed in a range of environments. To be of use across a range of environments, special attention must be paid to two crucially important characteristics of such instruments, i.e. their sensitivity and robustness. Thus, the objectives of this study were: 1. To compare the performance (in terms of their sensitivity and robustness) of the Duo Fluor and two other commercial fluorescence devices in laboratory conditions. 2. To assess the performance of the Duo Fluor in situ, in real time at a 450,000PE WwTW. Initially, the impact of quinine sulphate (QS), a highly fluorescent alkaloid with high quantum fluorescence yield, on peak T fluorescence in environmental waters was examined for the Duo Fluor and two commercially available, chamber-based fluorimeters, (F1) and (F2). The instruments' responses to three scenarios were assessed: 1. Deionised water (DW) spiked with QS (from 0.05 to 0.4 mg/L); 2. Environmental water (pond water, PW) spiked with QS (from 0.05 to 0.4 mg/L); 3. Different water samples from various environmental source. The results show that the facility to amend gain settings and the suitable choice of gain are crucial to obtaining reliable data on both peaks T and C in a wide range of water types. The Duo Fluor offers both of these advantages whilst commercially available instruments currently do not. The Duo Fluor was subsequently fixed at the final effluent (FE) discharge point of a WwTW and FE

  5. Real-time fluorescence lifetime actuation for cell sorting using a CMOS SPAD silicon photomultiplier.

    PubMed

    Rocca, Francescopaolo Mattioli Della; Nedbal, Jakub; Tyndall, David; Krstajić, Nikola; Li, David Day-Uei; Ameer-Beg, Simon M; Henderson, Robert K

    2016-02-15

    Time-correlated single photon counting (TCSPC) is a fundamental fluorescence lifetime measurement technique offering high signal to noise ratio (SNR). However, its requirement for complex software algorithms for histogram processing restricts throughput in flow cytometers and prevents on-the-fly sorting of cells. We present a single-point digital silicon photomultiplier (SiPM) detector accomplishing real-time fluorescence lifetime-activated actuation targeting cell sorting applications in flow cytometry. The sensor also achieves burst-integrated fluorescence lifetime (BIFL) detection by TCSPC. The SiPM is a single-chip complementary metal-oxide-semiconductor (CMOS) sensor employing a 32×32 single-photon avalanche diode (SPAD) array and eight pairs of time-interleaved time to digital converters (TI-TDCs) with a 50 ps minimum timing resolution. The sensor's pile-up resistant embedded center of mass method (CMM) processor accomplishes low-latency measurement and thresholding of fluorescence lifetime. A digital control signal is generated with a 16.6 μs latency for cell sorter actuation allowing a maximum cell throughput of 60,000 cells per second and an error rate of 0.6%. PMID:26872160

  6. Real-time intraoperative fluorescence imaging system using light-absorption correction

    NASA Astrophysics Data System (ADS)

    Themelis, George; Yoo, Jung Sun; Soh, Kwang-Sup; Schulz, Ralf; Ntziachristos, Vasilis

    2009-11-01

    We present a novel fluorescence imaging system developed for real-time interventional imaging applications. The system implements a correction scheme that improves the accuracy of epi-illumination fluorescence images for light intensity variation in tissues. The implementation is based on the use of three cameras operating in parallel, utilizing a common lens, which allows for the concurrent collection of color, fluorescence, and light attenuation images at the excitation wavelength from the same field of view. The correction is based on a ratio approach of fluorescence over light attenuation images. Color images and video is used for surgical guidance and for registration with the corrected fluorescence images. We showcase the performance metrics of this system on phantoms and animals, and discuss the advantages over conventional epi-illumination systems developed for real-time applications and the limits of validity of corrected epi-illumination fluorescence imaging.

  7. Continuous real-time measurement of aqueous cyanide

    DOEpatents

    Rosentreter, Jeffrey J.; Gering, Kevin L.

    2007-03-06

    This invention provides a method and system capable of the continuous, real-time measurement of low concentrations of aqueous free cyanide (CN) using an on-line, flow through system. The system is based on the selective reactivity of cyanide anions and the characteristically nonreactive nature of metallic gold films, wherein this selective reactivity is exploited as an indirect measurement for aqueous cyanide. In the present invention the dissolution of gold, due to the solubilization reaction with the analyte cyanide anion, is monitored using a piezoelectric microbalance contained within a flow cell.

  8. Real time monitoring of superoxide dynamics in vivo through fluorescent proteins using a sensitive fiber probe

    NASA Astrophysics Data System (ADS)

    Chang, Yu-Chung; Ken, Chuian-Fu; Hsu, Che-Wei; Liu, Ya-Ging

    2014-03-01

    Superoxide anion is the primary oxygen free radical generated in mitochondria that causes intracellular oxidative stress. The lack of a method to directly monitor superoxide concentration in vivo in real time has severely hindered our understanding on its pathophysiology. We made transgenic zebrafish to specifically express fluorescent proteins, which are recently developed as reversible superoxide-specific indicators, in the liver. A fiber-optic fluorescent probe was used to noninvasively monitor superoxide generation in the liver in real time. The fish were placed in microfluidic channels for manipulation and reagents administration. Several superoxide-inducing and scavenging reagents were administrated onto the fish to investigate their effects on superoxide anion balancing. The biochemical dynamics of superoxide due to the application reagents were revealed in the transient behaviors of fluorescence time courses. With the ability to monitor superoxide dynamics in vivo in real time, this method can be used as an in vivo pharmaceutical screening platform.

  9. Nondestructive and Real-time Measurement of Moisture in Plant

    NASA Astrophysics Data System (ADS)

    Ogawa, Yuichi; Kawase, Kodo; Mizuno, Maya; Yamashita, Masatsugu; Otani, Chiko

    We constructed a THz transillumination system for water content monitoring, and we succeeded in measuring the moisture level in plants. Our measurement system uses a widely tunable coherent THz parametric oscillator source. As target we chose for this experiment a leaf of Japanese basil. The time variation of the water content in the leaf was monitored in two situations: a leaf freshly cut which is left to dry out, and the leaf of a water stressed plant. We found by real-time measurements that the water content of a cut leaf does not decrease uniformly in time. Also, the response to water stress is delayed by about 5-10 minutes. Furthermore, we demonstrated a moisture measurement using a transillumination THz imaging system. As target we chose for this experiment a leaf of Hedera helix held between two thin plastic sheets. The change of the moisture distribution is clearly visible. These results show that the method described here can be applied to nondestructive and real-time monitoring of water content in plants.

  10. [Identification for genetically modified maize T14/T25 with real time fluorescent PCR method].

    PubMed

    Cao, Ji-Juan; Qin, Wen; Zhu, Shui-Fang; Cao, Yuan-Yin

    2004-09-01

    To identify genetically modified (GM) maize T14/T25 lines, a real-time fluorescent PCR (RTF PCR) assay was performed in this study. Primers and Taqman probes specific for inserted genes in the T14/T25 were used to conduct the real-time fluorescent (RTF) PCR and PCR assays. The RTF PCR method was established to detect and identify GM maize lines. The results show that the TaqMan probe could identify T14/T25 maize used, while other GM and NO-GM maize didn't be detected. The RTF PCR could be a new method for detecting other genetically modified organism.

  11. TRANSIENT, REAL-TIME, PARTICULATE EMISSION MEASUREMENTS IN DIESEL ENGINES

    SciTech Connect

    Gupta, S; Shih, J; Hillman, G; sekar, R; Graze, R; Shimpi, S; Martin, W; Pier, D

    2003-08-24

    This paper reports our efforts to develop an instrument, TG-1, to measure particulate emissions from diesel engines in real-time. TG-1 while based on laser-induced incandescence allows measurements at 10 Hz on typical engine exhausts. Using such an instrument, measurements were performed in the exhaust of a 1.7L Mercedes Benz engine coupled to a low inertia dynamometer. Comparative measurements performed under engine steady state conditions showed the instrument to agree within {+-}12% of measurements performed with an SMPS. Moreover, the instrument had far better time response and time resolution than a TEOM{reg_sign} 1105. Also, TG-1 appears to surpass the shortcomings of the TEOM instrument, i.e., of yielding negative values under certain engine conditions and, being sensitive to external vibration.

  12. Real-Time performance measurements of EPICS IOCcore.

    SciTech Connect

    Xu, S.; Kraimer, M. R.; Accelerator Systems Division

    2005-01-01

    As the Experimental Physics and Industrial Control System (EPICS) is used in an increasing number of accelerator control systems, EPICS IOCcore is ported to a wider variety of OS platforms and thus the performance of EPICS IOCcore on different hardware and software platforms becomes more important. This paper provides real-time performance measurements of EPICS IOCcore on a VME hardware platform and on three different OS platforms: vxWorks, RTEMS, and Linux. EPICS Input/Output Controller core (IOCcore) software has been ported to several different operating systems (OSs) and many hardware platforms. This paper compares the EPICS IOCcore runtime performance on one hardware platform (MVME2100 PowerPC) and three popular Operating Systems: vxWorks, RTEMS, and Linux. For Linux the following versions were tested: Linux 2.4.2 hard hat 2.0, standard Linux 2.4.30, and Linux 2.6.13. For Linux 2.6.13, the kernel was built both preemptive and non-preemptive. Three real-time parameters are measured: interrupt, context switch, and total response latency. On Linux, more detailed interrupt latencies are measured: interrupt top half to bottom half, and interrupt bottom half to user space interrupt service routine. To implement the tests, several software components were developed. In order to port to other operating systems or hardware platforms only, one component has to be implemented.

  13. Real-Time Coil Position Monitoring System for Biomagnetic Measurements

    NASA Astrophysics Data System (ADS)

    Oyama, Daisuke; Adachi, Yoshiaki; Higuchi, Masanori; Kawai, Jun; Kobayashi, Koichiro; Uehara, Gen

    In this paper, we propose a new method for monitoring the position of marker coils. The marker coil is used for indicating spatial relationship between subject's body and magnetic sensor arrays in biomagnetic measurements, such as magnetoencephalography (MEG) and magnetocardiography (MCG). We developed a real-time marker coil position monitoring system combined with a conventional MEG system. In order to achieve simultaneous measurement of MEG signals and marker signals, we separated their frequency bands. The frequency bands of flux-locked loop (FLL) circuits were separated into three parts by three integrators; low-band, mid-band, and high-band. The second and third bands were assigned for MEG signals and marker signals, respectively. This method can avoid the crosstalk of the marker signals to MEG signals. Marker signals were generated from five marker coils driven by five independent sinusoidal current generators. These signals were continuously measured by the high-band of FLL, and then the coils were localized by FFT processing and solving inverse problem. We succeeded in displaying the localized coil position on a PC monitor once per second in real-time.

  14. Real-time label-free quantitative fluorescence microscopy-based detection of ATP using a tunable fluorescent nano-aptasensor platform

    NASA Astrophysics Data System (ADS)

    Shrivastava, Sajal; Sohn, Il-Yung; Son, Young-Min; Lee, Won-Il; Lee, Nae-Eung

    2015-11-01

    Although real-time label-free fluorescent aptasensors based on nanomaterials are increasingly recognized as a useful strategy for the detection of target biomolecules with high fidelity, the lack of an imaging-based quantitative measurement platform limits their implementation with biological samples. Here we introduce an ensemble strategy for a real-time label-free fluorescent graphene (Gr) aptasensor platform. This platform employs aptamer length-dependent tunability, thus enabling the reagentless quantitative detection of biomolecules through computational processing coupled with real-time fluorescence imaging data. We demonstrate that this strategy effectively delivers dose-dependent quantitative readouts of adenosine triphosphate (ATP) concentration on chemical vapor deposited (CVD) Gr and reduced graphene oxide (rGO) surfaces, thereby providing cytotoxicity assessment. Compared with conventional fluorescence spectrometry methods, our highly efficient, universally applicable, and rational approach will facilitate broader implementation of imaging-based biosensing platforms for the quantitative evaluation of a range of target molecules.Although real-time label-free fluorescent aptasensors based on nanomaterials are increasingly recognized as a useful strategy for the detection of target biomolecules with high fidelity, the lack of an imaging-based quantitative measurement platform limits their implementation with biological samples. Here we introduce an ensemble strategy for a real-time label-free fluorescent graphene (Gr) aptasensor platform. This platform employs aptamer length-dependent tunability, thus enabling the reagentless quantitative detection of biomolecules through computational processing coupled with real-time fluorescence imaging data. We demonstrate that this strategy effectively delivers dose-dependent quantitative readouts of adenosine triphosphate (ATP) concentration on chemical vapor deposited (CVD) Gr and reduced graphene oxide (r

  15. Real-time control of sewer systems using turbidity measurements.

    PubMed

    Lacour, C; Schütze, M

    2011-01-01

    Real-time control (RTC) of urban drainage systems has been proven useful as a means to reduce pollution by combined sewer overflow discharges. So far, RTC has been investigated mainly with a sole focus on water quantity aspects. However, as measurement techniques for pollution of wastewater are advancing, pollution-based RTC might be of increasing interest. For example, turbidity data sets from an extensive measurement programme in two Paris catchments allow a detailed investigation of the benefits of using pollution-based data for RTC. This paper exemplifies this, comparing pollution-based RTC with flow-based RTC. Results suggest that pollution-based RTC indeed has some potential, particularly when measurements of water-quality characteristics are readily available.

  16. Real time monitoring of urban surface water quality using a submersible, tryptophan-like fluorescence sensor

    NASA Astrophysics Data System (ADS)

    Khamis, Kieran; Bradley, Chris; Hannah, David; Stevens, Rob

    2014-05-01

    Due to the recent development of field-deployable optical sensor technology, continuous quantification and characterization of surface water dissolved organic matter (DOM) is possible now. Tryptophan-like (T1) fluorescence has the potential to be a particularly useful indicator of human influence on water quality as T1 peaks are associated with the input of labial organic carbon (e.g. sewage or farm waste) and its microbial breakdown. Hence, real-time recording of T1 fluorescence could be particular useful for monitoring waste water infrastructure, treatment efficiency and the identification of contamination events at higher temporal resolution than available hitherto. However, an understanding of sensor measurement repeatability/transferability and interaction with environmental parameters (e.g. turbidity) is required. Here, to address this practical knowledge gap, we present results from a rigorous test of a commercially available submersible tryptophan fluorometer (λex 285, λem 350). Sensor performance was first examined in the laboratory by incrementally increasing turbidity under controlled conditions. Further to this the sensor was integrated into a multi-parameter sonde and field tests were undertaken involving: (i) a spatial sampling campaign across a range of surface water sites in the West Midlands, UK; and (ii) collection of high resolution (sub-hourly) samples from an urban stream (Bournbrook, Birmingham, U.K). To determine the ability of the sensor to capture spatiotemporal dynamics of urban waters DOM was characterized for each site or discrete time step using Excitation Emission Matrix spectroscopy and PARAFAC. In both field and laboratory settings fluorescence intensity was attenuated at high turbidity due to suspended particles increasing absorption and light scattering. For the spatial survey, instrument readings were compared to those obtained by a laboratory grade fluorometer (Varian Cary Eclipse) and a strong, linear relationship was apparent

  17. DEVELOPMENT OF A REAL-TIME FLUORESCENCE RESONANCE ENERGY TRANSFER (FRET) PCR TO DETECT ARCOBACTER SPECIES

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A real-time PCR targeting the gyrase A subunit gene outside the quinolone resistance-determining region has been developed to detect Arcobacter species. The species identification was made by probe hybridization and melting curve analysis, using the Fluorescence Resonance Energy Transfer technology...

  18. DEVELOPMENT OF A REAL-TIME FLUORESCENCE RESONANCE ENERGY TRANSFER PCR TO DETECT ARCOBACTER SPECIES

    Technology Transfer Automated Retrieval System (TEKTRAN)

    A real-time PCR targeting the gyrase A subunit gene outside the quinolone resistance-determining region has been developed to detect Arcobacter species. The species identification was made by probe hybridization and melting curve analysis, using Fluorescence Resonance Energy Transfer technology. D...

  19. Improved process control through real-time measurement of mineral content

    SciTech Connect

    Turler, Daniel; Karaca, Murat; Davis, William B.; Giauque, Robert D.; Hopkins, Deborah

    2001-11-02

    In a highly collaborative research and development project with mining and university partners, sensors and data-analysis tools are being developed for rock-mass characterization and real-time measurement of mineral content. Determining mineralogy prior to mucking in an open-pit mine is important for routing the material to the appropriate processing stream. A possible alternative to lab assay of dust and cuttings obtained from drill holes is continuous on-line sampling and real-time x-ray fluorescence (XRF) spectroscopy. Results presented demonstrate that statistical analyses combined with XRF data can be employed to identify minerals and, possibly, different rock types. The objective is to create a detailed three-dimensional mineralogical map in real time that would improve downstream process efficiency.

  20. Real-time diamagnetic flux measurements on ASDEX Upgrade.

    PubMed

    Giannone, L; Geiger, B; Bilato, R; Maraschek, M; Odstrčil, T; Fischer, R; Fuchs, J C; McCarthy, P J; Mertens, V; Schuhbeck, K H

    2016-05-01

    Real-time diamagnetic flux measurements are now available on ASDEX Upgrade. In contrast to the majority of diamagnetic flux measurements on other tokamaks, no analog summation of signals is necessary for measuring the change in toroidal flux or for removing contributions arising from unwanted coupling to the plasma and poloidal field coil currents. To achieve the highest possible sensitivity, the diamagnetic measurement and compensation coil integrators are triggered shortly before plasma initiation when the toroidal field coil current is close to its maximum. In this way, the integration time can be chosen to measure only the small changes in flux due to the presence of plasma. Two identical plasma discharges with positive and negative magnetic field have shown that the alignment error with respect to the plasma current is negligible. The measured diamagnetic flux is compared to that predicted by TRANSP simulations. The poloidal beta inferred from the diamagnetic flux measurement is compared to the values calculated from magnetic equilibrium reconstruction codes. The diamagnetic flux measurement and TRANSP simulation can be used together to estimate the coupled power in discharges with dominant ion cyclotron resonance heating. PMID:27250425

  1. Direct measurement meter indicates real-time energy flow

    SciTech Connect

    Heyden, W.H.V. )

    1991-05-01

    The increased activity in transporting gas and the use of natural gas from widely varying sources has created a need to simplify measurement of energy transfers in natural gas operations. The natural gas industry requires an energy measurement device that is simple, cost effective and accurate. Such a device must be a direct measurement meter, easy to install, and one which will measure energy transfers in natural gas regardless of volume, composition, heating value, supercompressibility, inert fractions and temperature. These and other factors that are required for what presently is and remains, a calculation of energy in natural gas. The need then, is for a flow device which will measure and indicate direct, real-time energy flow and perform at pipe line conditions. A flow meter has been under development for seven years and has been in field testing for three years at 4 different sites under a Gas Research Institute (GRI) sponsored program. The field test objective is to measure and verify the meter's technical properties under actual field service conditions. In each field test site, the meter is continuously compared to existing gas flow measurement devices. Eact test site has different meter configurations which allow a broad scope of comparison and testing experience.

  2. Detection of shrimp-derived components in food by real-time fluorescent PCR.

    PubMed

    Cao, Jijuan; Yu, Bing; Ma, Lidan; Zheng, Qiuyue; Zhao, Xin; Xu, Junyi

    2011-10-01

    Crustaceans such as shrimp and crabs and their products are important allergens in food, and allergic reactions due to the consumption of shrimp and crabs are frequently reported. However, the chemical properties of shrimp-derived allergens, except for Pen a I, are still unclear. Therefore, it is important to establish a more sensitive and specific method for detecting the composition of foods containing shrimp. In the present study, we developed a real-time fluorescent PCR to identify the specific shrimp-derived components in food. The primers and TaqMan probes for real-time fluorescent PCR were designed based on 16S rRNA genes through comparing a large number of nucleic acid sequences from different species of shrimp that have been published by the National Center for Biotechnology Information. In total, 56 kinds of samples, including different kinds of shrimp, crab, fish, shellfish, and octopus, were subjected to detection by real-time PCR. The results indicated that real-time fluorescent PCR could successfully identify the shrimp-derived components. In order to explore the effect of food processing on detection sensitivity, fish powder containing shrimp powder was treated by heating at 133°C for 30 min. The limit of detection of shrimp-derived components in fish powder was 0.05% (wt/wt). PMID:22004830

  3. Molecular Zipper: a fluorescent probe for real-time isothermal DNA amplification.

    PubMed

    Yi, Jizu; Zhang, Wandi; Zhang, David Y

    2006-01-01

    Rolling-circle amplification (RCA) and ramification amplification (RAM, also known as hyperbranched RCA) are isothermal nucleic acid amplification technologies that have gained a great application in in situ signal amplification, DNA and protein microarray assays, single nucleotide polymorphism detection, as well as clinical diagnosis. Real-time detection of RCA or RAM products has been a challenge because of most real-time detection systems, including Taqman and Molecular Beacon, are designed for thermal cycling-based DNA amplification technology. In the present study, we describe a novel fluorescent probe construct, termed molecular zipper, which is specially designed for quantifying target DNA by real-time monitoring RAM reactions. Our results showed that the molecular zipper has very low background fluorescence due to the strong interaction between two strands. Once it is incorporated into the RAM products its double strand region is opened by displacement, therefore, its fluorophore releases a fluorescent signal. Applying the molecular zipper in RAM assay, we were able to detect as few as 10 molecules within 90 min reaction. A linear relationship was observed between initial input of targets and threshold time (R2 = 0.985). These results indicate that molecular zipper can be applied to real-time monitoring and qualification of RAM reaction, implying an amenable method for automatic RAM-based diagnostic assays.

  4. Molecular Zipper: a fluorescent probe for real-time isothermal DNA amplification

    PubMed Central

    Yi, Jizu; Zhang, Wandi; Zhang, David Y.

    2006-01-01

    Rolling-circle amplification (RCA) and ramification amplification (RAM, also known as hyperbranched RCA) are isothermal nucleic acid amplification technologies that have gained a great application in in situ signal amplification, DNA and protein microarray assays, single nucleotide polymorphism detection, as well as clinical diagnosis. Real-time detection of RCA or RAM products has been a challenge because of most real-time detection systems, including Taqman and Molecular Beacon, are designed for thermal cycling-based DNA amplification technology. In the present study, we describe a novel fluorescent probe construct, termed molecular zipper, which is specially designed for quantifying target DNA by real-time monitoring RAM reactions. Our results showed that the molecular zipper has very low background fluorescence due to the strong interaction between two strands. Once it is incorporated into the RAM products its double strand region is opened by displacement, therefore, its fluorophore releases a fluorescent signal. Applying the molecular zipper in RAM assay, we were able to detect as few as 10 molecules within 90 min reaction. A linear relationship was observed between initial input of targets and threshold time (R2 = 0.985). These results indicate that molecular zipper can be applied to real-time monitoring and qualification of RAM reaction, implying an amenable method for automatic RAM-based diagnostic assays. PMID:16822854

  5. Detection of shrimp-derived components in food by real-time fluorescent PCR.

    PubMed

    Cao, Jijuan; Yu, Bing; Ma, Lidan; Zheng, Qiuyue; Zhao, Xin; Xu, Junyi

    2011-10-01

    Crustaceans such as shrimp and crabs and their products are important allergens in food, and allergic reactions due to the consumption of shrimp and crabs are frequently reported. However, the chemical properties of shrimp-derived allergens, except for Pen a I, are still unclear. Therefore, it is important to establish a more sensitive and specific method for detecting the composition of foods containing shrimp. In the present study, we developed a real-time fluorescent PCR to identify the specific shrimp-derived components in food. The primers and TaqMan probes for real-time fluorescent PCR were designed based on 16S rRNA genes through comparing a large number of nucleic acid sequences from different species of shrimp that have been published by the National Center for Biotechnology Information. In total, 56 kinds of samples, including different kinds of shrimp, crab, fish, shellfish, and octopus, were subjected to detection by real-time PCR. The results indicated that real-time fluorescent PCR could successfully identify the shrimp-derived components. In order to explore the effect of food processing on detection sensitivity, fish powder containing shrimp powder was treated by heating at 133°C for 30 min. The limit of detection of shrimp-derived components in fish powder was 0.05% (wt/wt).

  6. Real-time Fourier transform spectrometry for fluorescence imaging and flow cytometry

    SciTech Connect

    Buican, T.N.

    1990-01-01

    We present a Fourier transform (FT) spectrometer that is suitable for real-time spectral analysis in fluorescence imaging and flow cytometry. The instrument consists of a novel type of interferometer that can be modulated at frequencies of up to 100 kHz and has a high light throughput; and a dedicated, parallel array processor for the real-time computation of spectral parameters. The data acquisition array processor can be programmed by a host computer to perform any desired linear transform on the interferogram and can thus separate contributions from multiple fluorescence microscopy. The integration of a flow cytometer and a spectral imaging fluorescence microscope is discussed, and the concepts of direct and reversed virtual sorting'' are introduced. 9 refs., 8 figs.

  7. Designing Information Measures for Real-time Lightcurve Classification

    NASA Astrophysics Data System (ADS)

    Jones, David Edward; Chen, Yang; Meng, Xiao-Li; Siemiginowska, Aneta; Kashyap, Vinay

    2016-01-01

    Since telescope time is limited, real-time lightcurve classification involves carefully selecting future time points at which sources must be observed in order to maximize the information that will be gained for classification. We propose a framework for constructing measures of information for testing/classification/model-selection and demonstrate their use in experimental design. Degroot (1962) developed a general framework for constructing Bayesian measures of the expected information that an experiment will provide for estimation, and our framework analogously constructs measures of information for hypothesis testing. Such test information measures are most useful for model selection and classification problems. Indeed, our framework suggests a probability based measure of test information, which in decision problems has more appealing properties than variance based measures. In the case of lightcurve classification, we adapt our designs to penalize long waits until the next observation time. Lastly, we consider ways to address other aspects of the problem, such as uncertainty estimation arising due to contamination from nearby contaminating sources or background diffuse emission. We acknowledge support from Smithsonian Competitive Grants Fund 40488100HH0043 and NSF grant DMS 1208791.

  8. Real-time maximum a-posteriori image reconstruction for fluorescence microscopy

    NASA Astrophysics Data System (ADS)

    Jabbar, Anwar A.; Dilipkumar, Shilpa; C K, Rasmi; Rajan, K.; Mondal, Partha P.

    2015-08-01

    Rapid reconstruction of multidimensional image is crucial for enabling real-time 3D fluorescence imaging. This becomes a key factor for imaging rapidly occurring events in the cellular environment. To facilitate real-time imaging, we have developed a graphics processing unit (GPU) based real-time maximum a-posteriori (MAP) image reconstruction system. The parallel processing capability of GPU device that consists of a large number of tiny processing cores and the adaptability of image reconstruction algorithm to parallel processing (that employ multiple independent computing modules called threads) results in high temporal resolution. Moreover, the proposed quadratic potential based MAP algorithm effectively deconvolves the images as well as suppresses the noise. The multi-node multi-threaded GPU and the Compute Unified Device Architecture (CUDA) efficiently execute the iterative image reconstruction algorithm that is ≈200-fold faster (for large dataset) when compared to existing CPU based systems.

  9. Grayscale imbalance correction in real-time phase measuring profilometry

    NASA Astrophysics Data System (ADS)

    Zhu, Lin; Cao, Yiping; He, Dawu; Chen, Cheng

    2016-10-01

    Grayscale imbalance correction in real-time phase measuring profilometry (RPMP) is proposed. In the RPMP, the sufficient information is obtained to reconstruct the 3D shape of the measured object in one over twenty-four of a second. Only one color fringe pattern whose R, G and B channels are coded as three sinusoidal phase-shifting gratings with an equivalent shifting phase of 2π/3 is sent to a flash memory on a specialized digital light projector (SDLP). And then the SDLP projects the fringe patterns in R, G and B channels sequentially onto the measured object in one over seventy-two of a second and meanwhile a monochrome CCD camera captures the corresponding deformed patterns synchronously with the SDLP. Because the deformed patterns from three color channels are captured at different time, the color crosstalk is avoided completely. But due to the monochrome CCD camera's different spectral sensitivity to R, G and B tricolor, there will be grayscale imbalance among these deformed patterns captured at R, G and B channels respectively which may result in increasing measuring errors or even failing to reconstruct the 3D shape. So a new grayscale imbalance correction method based on least square method is developed. The experimental results verify the feasibility of the proposed method.

  10. Real-Time Measurement of Vehicle Exhaust Gas Flow

    SciTech Connect

    Hardy, J.E.; Hylton, J.O.; Joy, R.D.; McKnight, T.E.

    1999-06-28

    A flow measurement system was developed to measure, in real-time, the exhaust gas flow from vehicies. This new system was based on the vortex shedding principle using ultrasonic detectors for sensing the shed vortices. The flow meter was designed to measure flow over a range of 1 to 366 Ips with an inaccuracy of ~1o/0 of reading. Additionally, the meter was engineered to cause minimal pressure drop (less than 125mm of water), to function in a high temperature environment (up to 650oC) with thermal transients of 15 oC/s, and to have a response time of 0.1 seconds for a 10% to 90!40 step change. The flow meter was also configured to measure hi-directional flow. Several flow meter prototypes were fabricated, tested, and calibrated in air, simulated exhaust gas, and actual exhaust gas. Testing included gas temperatures to 600oC, step response experiments, and flow rates from O to 360 lps in air and exhaust gas. Two prototypes have been tested extensively at NIST and two additional meters have been installed in exhaust gas flow lines for over one year. This new flow meter design has shown to be accurate, durabIe, fast responding, and to have a wide rangeabi~ity.

  11. Excimer laser fragmentation fluorescence spectroscopy for real-time monitoring of combustion generated pollutants

    NASA Astrophysics Data System (ADS)

    Damm, Christopher John

    Toxic pollutant emissions from combustion pose a hazard to public and environmental health. Better diagnostic techniques would benefit emissions monitoring programs and aid research aimed at understanding toxic pollutant formation and behavior. Excimer Laser Fragmentation Fluorescence Spectroscopy (ELFFS) provides sensitive, real-time, in situ measurements of several important combustion related pollutants. This thesis demonstrates the capabilities of ELFFS for detecting amines in combustion exhausts and carbonaceous particulate matter from engines. ELFFS photofragments target species using a 193 nm excimer laser to form fluorescent signature species. The NH (A--X) band at 336 nm is used to monitor ammonia, ammonium nitrate and ammonium sulfate. There are no major interferences in this spectral region. The sensitivity is approximately 100 ppb (1 second measurement) for ammonia in post flame gases and 100 ppb (mole fraction) for ammonium nitrate/sulfate in ambient air. Quenching of NH by the major combustion products does not limit the applicability of the detection method. Fluorescence from excited carbon atoms at 248 nm (1P 0 → 1S0) following photofragmentation measures particulate matter in a two-stroke gasoline engine and a four-stroke diesel engine. Fluorescence from CH (A2Delta → X 2pi, 431 nm) C2 (d3pig → a3piu, 468 nm) fragments is also observed. The atomic carbon fluorescence signal is proportional to the mass concentration of particles in the laser interrogation region. The 100-shot (1 second) detection limit for particles in the two-stroke gasoline engine exhaust is 0.5 ppb (volume fraction). The 100-shot detection limit for four-stroke diesel particulate matter is 0.2 ppb. Interferences from carbon monoxide and carbon dioxide are negligible. The ratios of atomic carbon, C2, and CH peaks provide information on the molecular forms of compounds condensed on or contained within the particles measured. The C/C2 signal ratio can be used to distinguish

  12. Accuracy of real time radiography burning rate measurement

    NASA Astrophysics Data System (ADS)

    Olaniyi, Bisola

    The design of a solid propellant rocket motor requires the determination of a propellant's burning-rate and its dependency upon environmental parameters. The requirement that the burning-rate be physically measured, establishes the need for methods and equipment to obtain such data. A literature review reveals that no measurement has provided the desired burning rate accuracy. In the current study, flash x-ray modeling and digitized film-density data were employed to predict motor-port area to length ratio. The pre-fired port-areas and base burning rate were within 2.5% and 1.2% of their known values, respectively. To verify the accuracy of the method, a continuous x-ray and a solid propellant rocket motor model (Plexiglas cylinder) were used. The solid propellant motor model was translated laterally through a real-time radiography system at different speeds simulating different burning rates. X-ray images were captured and the burning-rate was then determined. The measured burning rate was within 1.65% of the known values.

  13. An accurate assay for HCV based on real-time fluorescence detection of isothermal RNA amplification.

    PubMed

    Wu, Xuping; Wang, Jianfang; Song, Jinyun; Li, Jiayan; Yang, Yongfeng

    2016-09-01

    Hepatitis C virus (HCV) is one of the common reasons of liver fibrosis and hepatocellular carcinoma (HCC). Early, rapid and accurate HCV RNA detection is important to prevent and control liver disease. A simultaneous amplification and testing (SAT) assay, which is based on isothermal amplification of RNA and real-time fluorescence detection, was designed to optimize routine HCV RNA detection. In this study, HCV RNA and an internal control (IC) were amplified and analyzed simultaneously by SAT assay and detection of fluorescence using routine real-time PCR equipment. The assay detected as few as 10 copies of HCV RNA transcripts. We tested 705 serum samples with SAT, among which 96.4% (680/705) showed consistent results compared with routine real-time PCR. About 92% (23/25) discordant samples were confirmed to be same results as SAT-HCV by using a second real-time PCR. The sensitivity and specificity of SAT-HCV assay were 99.6% (461/463) and 100% (242/242), respectively. In conclusion, the SAT assay is an accurate test with a high specificity and sensitivity which may increase the detection rate of HCV. It is therefore a promising tool to diagnose HCV infection. PMID:27283884

  14. An accurate assay for HCV based on real-time fluorescence detection of isothermal RNA amplification.

    PubMed

    Wu, Xuping; Wang, Jianfang; Song, Jinyun; Li, Jiayan; Yang, Yongfeng

    2016-09-01

    Hepatitis C virus (HCV) is one of the common reasons of liver fibrosis and hepatocellular carcinoma (HCC). Early, rapid and accurate HCV RNA detection is important to prevent and control liver disease. A simultaneous amplification and testing (SAT) assay, which is based on isothermal amplification of RNA and real-time fluorescence detection, was designed to optimize routine HCV RNA detection. In this study, HCV RNA and an internal control (IC) were amplified and analyzed simultaneously by SAT assay and detection of fluorescence using routine real-time PCR equipment. The assay detected as few as 10 copies of HCV RNA transcripts. We tested 705 serum samples with SAT, among which 96.4% (680/705) showed consistent results compared with routine real-time PCR. About 92% (23/25) discordant samples were confirmed to be same results as SAT-HCV by using a second real-time PCR. The sensitivity and specificity of SAT-HCV assay were 99.6% (461/463) and 100% (242/242), respectively. In conclusion, the SAT assay is an accurate test with a high specificity and sensitivity which may increase the detection rate of HCV. It is therefore a promising tool to diagnose HCV infection.

  15. Real-time super-resolution imaging by high-speed fluorescence emission difference microscopy

    NASA Astrophysics Data System (ADS)

    Rong, Zihao; Li, Shuai; Kuang, Cuifang; Xu, Yingke; Liu, Xu

    2014-09-01

    The recently proposed fluorescence emission difference (FED) microscopy has been demonstrated to be capable of breaking the diffraction barrier, which restricts the spatial resolution of far-field fluorescence microscopy. In this paper, we report a novel high-speed FED system that can realize real-time super-resolution imaging. By replacing the conventional nanopositioning stage with a galvo mirror, the temporal resolution of FED is improved to nearly one frame per second, which is 100 times faster than that of best existing FED, while the system maintains a super-high spatial resolution of 150 nm, which is far beyond the diffraction barrier. Therefore, the high-speed FED is suitable for large-area observations while avoiding photobleaching. Detailed theoretical analysis, simulations, and experimental real-time resolution tests on 100 nm nanoparticles and biological cells are reported.

  16. Compact wearable dual-mode imaging system for real-time fluorescence image-guided surgery

    NASA Astrophysics Data System (ADS)

    Zhu, Nan; Huang, Chih-Yu; Mondal, Suman; Gao, Shengkui; Huang, Chongyuan; Gruev, Viktor; Achilefu, Samuel; Liang, Rongguang

    2015-09-01

    A wearable all-plastic imaging system for real-time fluorescence image-guided surgery is presented. The compact size of the system is especially suitable for applications in the operating room. The system consists of a dual-mode imaging system, see-through goggle, autofocusing, and auto-contrast tuning modules. The paper will discuss the system design and demonstrate the system performance.

  17. Compact wearable dual-mode imaging system for real-time fluorescence image-guided surgery

    PubMed Central

    Zhu, Nan; Huang, Chih-Yu; Mondal, Suman; Gao, Shengkui; Huang, Chongyuan; Gruev, Viktor; Achilefu, Samuel; Liang, Rongguang

    2015-01-01

    Abstract. A wearable all-plastic imaging system for real-time fluorescence image-guided surgery is presented. The compact size of the system is especially suitable for applications in the operating room. The system consists of a dual-mode imaging system, see-through goggle, autofocusing, and auto-contrast tuning modules. The paper will discuss the system design and demonstrate the system performance. PMID:26358823

  18. Real-time dopamine measurement in awake monkeys.

    PubMed

    Schluter, Erik W; Mitz, Andrew R; Cheer, Joseph F; Averbeck, Bruno B

    2014-01-01

    Fast-scan cyclic voltammetry (FSCV) is often used to measure real-time dopamine (DA) concentrations in awake, behaving rodents. Extending this technique to work in monkeys would provide a platform for advanced behavioral studies and a primate model for preclinical research. The present study demonstrates the feasibility of DA recordings in two awake monkeys (Macaca mulatta) using a mixture of techniques adapted from rodent, primate and brain slice work. We developed a long carbon fiber electrode to operate in the larger primate brain. This electrode was lowered into the striatum each day using a recording chamber and a detachable micromanipulator system. A manipulator also moved one or more tungsten stimulating electrodes into either the nearby striatum or the ventral tegmental area/substantia nigra pars compacta (VTA/SNc). We developed an electrical stimulation controller to reduce artifacts during electrical stimulation. We also introduce a stimulation-based methodology for estimating distances between electrodes in the brain. Dopamine responses within the striatum were evoked by either stimulation of the striatum near the FSCV electrode, or stimulation within the VTA/SNc. Unexpected juice rewards also evoked dopamine responses in the ventral striatum. Thus, we demonstrate that robust dopamine responses can be recorded from awake, behaving primates with FSCV. In addition, we describe how a stimulation technique borrowed from the neuroprosthetics field can activate the distributed monkey midbrain dopamine system in a way that mimics rodent VTA stimulation. PMID:24921937

  19. Real-Time Dopamine Measurement in Awake Monkeys

    PubMed Central

    Schluter, Erik W.; Mitz, Andrew R.; Cheer, Joseph F.; Averbeck, Bruno B.

    2014-01-01

    Fast-scan cyclic voltammetry (FSCV) is often used to measure real-time dopamine (DA) concentrations in awake, behaving rodents. Extending this technique to work in monkeys would provide a platform for advanced behavioral studies and a primate model for preclinical research. The present study demonstrates the feasibility of DA recordings in two awake monkeys (Macaca mulatta) using a mixture of techniques adapted from rodent, primate and brain slice work. We developed a long carbon fiber electrode to operate in the larger primate brain. This electrode was lowered into the striatum each day using a recording chamber and a detachable micromanipulator system. A manipulator also moved one or more tungsten stimulating electrodes into either the nearby striatum or the ventral tegmental area/substantia nigra pars compacta (VTA/SNc). We developed an electrical stimulation controller to reduce artifacts during electrical stimulation. We also introduce a stimulation-based methodology for estimating distances between electrodes in the brain. Dopamine responses within the striatum were evoked by either stimulation of the striatum near the FSCV electrode, or stimulation within the VTA/SNc. Unexpected juice rewards also evoked dopamine responses in the ventral striatum. Thus, we demonstrate that robust dopamine responses can be recorded from awake, behaving primates with FSCV. In addition, we describe how a stimulation technique borrowed from the neuroprosthetics field can activate the distributed monkey midbrain dopamine system in a way that mimics rodent VTA stimulation. PMID:24921937

  20. Real-time histology in liver disease using multiphoton microscopy with fluorescence lifetime imaging

    PubMed Central

    Wang, Haolu; Liang, Xiaowen; Mohammed, Yousuf H.; Thomas, James A.; Bridle, Kim R.; Thorling, Camilla A.; Grice, Jeffrey E.; Xu, Zhi Ping; Liu, Xin; Crawford, Darrell H. G.; Roberts, Michael S.

    2015-01-01

    Conventional histology with light microscopy is essential in the diagnosis of most liver diseases. Recently, a concept of real-time histology with optical biopsy has been advocated. In this study, live mice livers (normal, with fibrosis, steatosis, hepatocellular carcinoma and ischemia-reperfusion injury) were imaged by MPM-FLIM for stain-free real-time histology. The acquired MPM-FLIM images were compared with conventional histological images. MPM-FLIM imaged subsurface cellular and subcellular histopathological hallmarks of live liver in mice models at high resolution. Additional information such as distribution of stellate cell associated autofluorescence and fluorescence lifetime changes was also gathered by MPM-FLIM simultaneously, which cannot be obtained from conventional histology. MPM-FLIM could simultaneously image and quantify the cellular morphology and microenvironment of live livers without conventional biopsy or fluorescent dyes. We anticipate that in the near future MPM-FLIM will be evaluated from bench to bedside, leading to real-time histology and dynamic monitoring of human liver diseases. PMID:25798303

  1. Real-time endoscopic guidance using near-infrared fluorescent light for thoracic surgery

    NASA Astrophysics Data System (ADS)

    Venugopal, Vivek; Stockdale, Alan; Neacsu, Florin; Kettenring, Frank; Frangioni, John V.; Gangadharan, Sidharta P.; Gioux, Sylvain

    2013-03-01

    Lung cancer is the leading cause of cancer death in the United States, accounting for 28% of all cancer deaths. Standard of care for potentially curable lung cancer involves preoperative radiographic or invasive staging, followed by surgical resection. With recent adjuvant chemotherapy and radiation studies showing a survival advantage in nodepositive patients, it is crucial to accurately stage these patients surgically in order to identify those who may benefit. However, lymphadenectomy in lung cancer is currently performed without guidance, mainly due to the lack of tools permitting real-time, intraoperative identification of lymph nodes. In this study we report the design and validation of a novel, clinically compatible near-infrared (NIR) fluorescence thoracoscope for real-time intraoperative guidance during lymphadenectomy. A novel, NIR-compatible, clinical rigid endoscope has been designed and fabricated, and coupled to a custom source and a dual channel camera to provide simultaneous color and NIR fluorescence information to the surgeon. The device has been successfully used in conjunction with a safe, FDA-approved fluorescent tracer to detect and resect mediastinal lymph nodes during thoracic surgery on Yorkshire pigs. Taken together, this study lays the foundation for the clinical translation of endoscopic NIR fluorescence intraoperative guidance and has the potential to profoundly impact the management of lung cancer patients.

  2. Real-time wavefront reconstruction from intensity measurements

    NASA Astrophysics Data System (ADS)

    Smith, Carlas; Marinica, Raluca; Verhaegen, Michel

    2013-12-01

    We propose an ecient approximation to the nonlinear phase diversity method for wavefront reconstruction method from intensity measurements in order to avoid the shortcomings of the nonlinear phase diversity method that prevent its real-time application, such as its computationally complex and the presence of local minima. The new method is called linear sequential phase diversity (LSPD). The method assumes that residual phase aberration is small and makes use of a rst order Taylor expansion of the point spread function (PSF). The Taylor expansion is performed in two dierent phase diversities, that can be arbitrary (large) pupil shapes in order to optimize the phase retrieval. For static aberrations LSPD makes use of two images that are collected at each iteration step of the algorithm. In each step the residual phase aberrations are estimated by solving a linear least squares problem, followed by the use of a deformable mirror to correct for the aberrations. The computational complexity of LSPD is O(m*m) - where m*m is the number of pixels. For the static case the convergence of the LSPD iterations have been studied and experimentally veried. In an extensive comparison the method is compared with the recently proposed method of [1]. This study demonstrates the improved performance both computationally and in accuracy with respect to existing competitors that also linearize the PSF. A further contribution of the paper is that we extend the static LSPD method to the case of dynamic wavefront reconstruction based on intensity measurements. Here the dynamics are assumed to be modelled standardly by a linear innovation model such that its spectrum e.g. approximates that given by Kolmogorov. The advantage of the application of the dynamic variant of the LSPD method is that in closed-loop the assumption that the residual phase aberration is small is justiable, since the goal of the controller is to reduce (minimize) the residual phase aberration. This unique contribution

  3. Real-time fluorescence tracking of gene delivery via multifunctional nanocomposites.

    PubMed

    Bai, Min; Bai, Xilin; Wang, Leyu

    2014-11-18

    Fluorescence imaging of transduced cells and tissues is valuable in the development of gene vectors and the evaluation of gene therapy efficacy. We report here the simple and rational design of multifunctional nanocomposites (NCs) for simultaneous gene delivery and fluorescence tracking based on ZnS:Mn(2+) quantum dots (QDs) and positively charged polymer coating. The positively charged imidazole in the as-synthesized amphiphilic copolymer can be used for gene loading via electrostatic interaction. While the introduced poly(ethylene glycol) (PEG) can be used to reduce the binding of plasma proteins to nanovectors and minimize clearance by the reticuloendothelial system after intravenous administration. Most importantly, these multifunctional nanovectors showed much lower cellular toxicity than the commercial polyethylenimine (PEI) transfection vectors. On the basis of the red fluorescence of QDs, we can real-time track the gene delivery in cells, and the transfection efficacy of pDNA encoding enhanced green fluorescence protein (pEGFP) was monitored via the green fluorescence of the GFP expressed by the pDNA delivered into the nuclei. Fluorescence imaging analysis confirmed that the QDs-based nanovectors delivered pDNA into HepG2 cells efficiently. These new insights and capabilities pave a new way toward nanocomposite engineering for fluorescence imaging tracking of gene therapy.

  4. Real-time detection of cellular death receptor-4 activation by fluorescence resonance energy transfer.

    PubMed

    Dereli-Korkut, Zeynep; Gandhok, Harmeet; Zeng, Ling Ge; Waqas, Sidra; Jiang, Xuejun; Wang, Sihong

    2013-05-01

    Targeted therapy involving the activation of death receptors DR4 and/or DR5 by its ligand, TRAIL, can selectively induce apoptosis in certain tumor cells. In order to profile the dynamic activation or trimerization of TRAIL-DR4 in live cells in real-time, the development of an apoptosis reporter cell line is essential. Fluorescence resonance energy transfer (FRET) technology via a FRET pair, cyan fluorescence protein (CFP) and yellow fluorescence protein (YFP), was used in this study. DR4-CFP and DR4-YFP were stably expressed in human lung cancer PC9 cells. Flow cytometer sorting and limited dilution coupled with fluorescence microscopy were used to select a monoclonal reporter cell line with high and compatible expression levels of DR4-CFP and DR4-YFP. FRET experiments were conducted and FRET efficiencies were monitored according to the Siegel's YFP photobleaching FRET protocol. Upon TRAIL induction a significant increase in FRET efficiencies from 5% to 9% demonstrated the ability of the DR4-CFP/YFP reporter cell line in monitoring the dynamic activation of TRAIL pathways. 3D reconstructed confocal images of DR4-CFP/YFP reporter cells exhibited a colocalized expression of DR4-CFP and DR4-YFP mainly on cell membranes. FRET results obtained during this study complements the use of epi-fluorescence microscopy for FRET analysis. The real-time FRET analysis allows the dynamic profiling of the activation of TRAIL pathways by using the time-lapse fluorescence microscopy. Therefore, DR4-CFP/YFP PC9 reporter cells along with FRET technology can be used as a tool for anti-cancer drug screening to identify compounds that are capable of activating TRAIL pathways.

  5. Real-time detection of DNA topological changes with a fluorescently labeled cruciform.

    PubMed

    Jude, Kevin M; Hartland, Abbey; Berger, James M

    2013-07-01

    Topoisomerases are essential cellular enzymes that maintain the appropriate topological status of DNA and are the targets of several antibiotic and chemotherapeutic agents. High-throughput (HT) analysis is desirable to identify new topoisomerase inhibitors, but standard in vitro assays for DNA topology, such as gel electrophoresis, are time-consuming and are not amenable to HT analysis. We have exploited the observation that closed-circular DNA containing an inverted repeat can release the free energy stored in negatively supercoiled DNA by extruding the repeat as a cruciform. We inserted an inverted repeat containing a fluorophore-quencher pair into a plasmid to enable real-time monitoring of plasmid supercoiling by a bacterial topoisomerase, Escherichia coli gyrase. This substrate produces a fluorescent signal caused by the extrusion of the cruciform and separation of the labels as gyrase progressively underwinds the DNA. Subsequent relaxation by a eukaryotic topoisomerase, human topo IIα, causes reintegration of the cruciform and quenching of fluorescence. We used this approach to develop a HT screen for inhibitors of gyrase supercoiling. This work demonstrates that fluorescently labeled cruciforms are useful as general real-time indicators of changes in DNA topology that can be used to monitor the activity of DNA-dependent motor proteins.

  6. Real-time detection of DNA topological changes with a fluorescently labeled cruciform

    PubMed Central

    Jude, Kevin M.; Hartland, Abbey; Berger, James M.

    2013-01-01

    Topoisomerases are essential cellular enzymes that maintain the appropriate topological status of DNA and are the targets of several antibiotic and chemotherapeutic agents. High-throughput (HT) analysis is desirable to identify new topoisomerase inhibitors, but standard in vitro assays for DNA topology, such as gel electrophoresis, are time-consuming and are not amenable to HT analysis. We have exploited the observation that closed-circular DNA containing an inverted repeat can release the free energy stored in negatively supercoiled DNA by extruding the repeat as a cruciform. We inserted an inverted repeat containing a fluorophore-quencher pair into a plasmid to enable real-time monitoring of plasmid supercoiling by a bacterial topoisomerase, Escherichia coli gyrase. This substrate produces a fluorescent signal caused by the extrusion of the cruciform and separation of the labels as gyrase progressively underwinds the DNA. Subsequent relaxation by a eukaryotic topoisomerase, human topo IIα, causes reintegration of the cruciform and quenching of fluorescence. We used this approach to develop a HT screen for inhibitors of gyrase supercoiling. This work demonstrates that fluorescently labeled cruciforms are useful as general real-time indicators of changes in DNA topology that can be used to monitor the activity of DNA-dependent motor proteins. PMID:23680786

  7. Real-time observation of single-molecule fluorescence in microdroplet streams

    SciTech Connect

    Barnes, M.D.; Lermer, N.; Kung, C.; Whitten, W.B.; Ramsey, J.M.; Hill, S.C.

    1997-08-01

    We report real-time observation of fluorescence bursts from individual Rhodamine 6G molecules in streams of microdroplets (peak signal-to-noise ratios, {approx}30) whose trajectories are constrained with a linear electric quadrupole. This approach offers a reasonable dynamic range in droplet size (3{endash}12{minus}{mu}m diameter) with {lt}1{percent} shot-to-shot size fluctuations and sensitivity comparable with that of droplet levitation techniques with at least 10{sup 3} higher analysis rates. Applications to the study of single-molecule microcavity effects and stimulated emission are discussed.

  8. A quantitative method for measuring innate phagocytosis by human monocytes using real-time flow cytometry.

    PubMed

    Gu, Ben J; Sun, Chun; Fuller, Stephen; Skarratt, Kristen K; Petrou, Steven; Wiley, James S

    2014-04-01

    Phagocytosis is central to immunity however a rapid and standardized method is much needed for quantitative assessment of the phagocytic process. We describe a real-time flow cytometric method to quantitate the phagocytosis of fluorescent latex beads by human monocytes in serum-free conditions. Effects of buffer composition, temperature, pH, and bead surface on phagocytic rate are described. The innate phagocytic ability of human monocytes from single subjects measured by this method was relatively stable over many months although phagocytosis rate varied as much as two-fold between individuals. Comparable results were obtained with a simplified method using several mL of whole blood which is suitable for routine clinical application. This method also allows two-color flow cytometric measurement of cytosolic calcium levels during the phagocytic uptake of fluorescent beads.

  9. Fluorescence particle detector for real-time quantification of viable organisms in air

    NASA Astrophysics Data System (ADS)

    Luoma, Greg; Cherrier, Pierre P.; Piccioni, Marc; Tanton, Carol; Herz, Steve; DeFreez, Richard K.; Potter, Michael; Girvin, Kenneth L.; Whitney, Ronald

    2002-02-01

    The ability to detect viable organisms in air in real time is important in a number of applications. Detecting high levels of airborne organisms in hospitals can prevent post-operative infections and the spread of diseases. Monitoring levels of airborne viable organisms in pharmaceutical facilities can ensure safe production of drugs or vaccines. Monitoring airborne bacterial levels in meat processing plants can help to prevent contamination of food products. Monitoring the level of airborne organisms in bio-containment facilities can ensure that proper procedures are being followed. Finally, detecting viable organisms in real time is a key to defending against biological agent attacks. This presentation describes the development and performance of a detector, based on fluorescence particle counting technology, where an ultraviolet laser is used to count particles by light scattering and elicit fluorescence from specific biomolecules found only in living organisms. The resulting detector can specifically detect airborne particles containing living organisms from among the large majority of other particles normally present in air. Efforts to develop the core sensor technology, focusing on integrating an UV laser with a specially designed particle-counting cell will be highlighted. The hardware/software used to capture the information from the sensor, provide an alarm in the presence of an unusual biological aerosol content will also be described. Finally, results from experiments to test the performance of the detector will be presented.

  10. Assessment of Spectroscopic, Real-time Ion Thruster Grid Erosion-rate Measurements

    NASA Technical Reports Server (NTRS)

    Domonkos, Matthew T.; Stevens, Richard E.

    2000-01-01

    The success of the ion thruster on the Deep Space One mission has opened the gate to the use of primary ion propulsion. Many of the projected planetary missions require throughput and specific impulse beyond those qualified to date. Spectroscopic, real-time ion thruster grid erosion-rate measurements are currently in development at the NASA Glenn Research Center. A preliminary investigation of the emission spectra from an NSTAR derivative thruster with titanium grid was conducted. Some titanium lines were observed in the discharge chamber; however, the signals were too weak to estimate the erosion of the screen grid. Nevertheless, this technique appears to be the only non-intrusive real-time means to evaluate screen grid erosion, and improvement of the collection optics is proposed. Direct examination of the erosion species using laser-induced fluorescence (LIF) was determined to be the best method for a real-time accelerator grid erosion diagnostic. An approach for a quantitative LIF diagnostic was presented.

  11. Conjugated polyelectrolyte based fluorescence turn-on assay for real-time monitoring of protease activity.

    PubMed

    Wang, Yanyan; Zhang, Yong; Liu, Bin

    2010-10-15

    A fluorescence "turn-on" assay for monitoring protease activity is developed on the basis of a water-soluble carboxylated polyfluorene derivative, PFP-CO₂Na, and its different fluorescence response toward cytochrome c (cyt c) and its fragments. PFP-CO₂Na is synthesized via Suzuki coupling polymerization between 2,7-dibromo-9,9-bis(3'-tert-butyl propanoate)fluorene and 1,4-bis(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-benzene, followed by treatment with trifluoroacetic acid and Na₂CO₃. The fluorescence of PFP-CO₂Na can be significantly quenched by cyt c due to complexation-mediated electron transfer between the polymer and protein. Using the complex of PFP-CO₂Na/cyt c as a substrate, a real-time fluorescence turn-on assay for trypsin activity study has been developed. Addition of trypsin to the substrate solution induces gradual recovery of the fluorescence intensity for PFP-CO₂Na due to trypsin-catalyzed hydrolysis of cyt c, which dissociates the heme moiety from the polymer vicinity. The time-dependent fluorescence intensity increase of PFP-CO₂Na in the presence of trypsin allows us to derive the initial reaction rates and k(cat)/K(m) (5350 M⁻¹ s⁻¹) for trypsin-catalyzed hydrolysis. Addition of trypsin inhibitor efficiently inhibits trypsin-catalyzed hydrolysis reaction of cyt c, which leads to a decreased fluorescence turn-on response of PFP-CO₂Na.

  12. Lysosome triggered near-infrared fluorescence imaging of cellular trafficking processes in real time

    PubMed Central

    Grossi, Marco; Morgunova, Marina; Cheung, Shane; Scholz, Dimitri; Conroy, Emer; Terrile, Marta; Panarella, Angela; Simpson, Jeremy C.; Gallagher, William M.; O'Shea, Donal F.

    2016-01-01

    Bioresponsive NIR-fluorophores offer the possibility for continual visualization of dynamic cellular processes with added potential for direct translation to in vivo imaging. Here we show the design, synthesis and lysosome-responsive emission properties of a new NIR fluorophore. The NIR fluorescent probe design differs from typical amine functionalized lysosomotropic stains with off/on fluorescence switching controlled by a reversible phenol/phenolate interconversion. Emission from the probe is shown to be highly selective for the lysosomes in co-imaging experiments using a HeLa cell line expressing the lysosomal-associated membrane protein 1 fused to green fluorescent protein. The responsive probe is capable of real-time continuous imaging of fundamental cellular processes such as endocytosis, lysosomal trafficking and efflux in 3D and 4D. The advantage of the NIR emission allows for direct translation to in vivo tumour imaging, which is successfully demonstrated using an MDA-MB-231 subcutaneous tumour model. This bioresponsive NIR fluorophore offers significant potential for use in live cellular and in vivo imaging, for which currently there is a deficit of suitable molecular fluorescent tools. PMID:26927507

  13. Near real time, accurate, and sensitive microbiological safety monitoring using an all-fibre spectroscopic fluorescence system

    NASA Astrophysics Data System (ADS)

    Vanholsbeeck, F.; Swift, S.; Cheng, M.; Bogomolny, E.

    2013-11-01

    Enumeration of microorganisms is an essential microbiological task for many industrial sectors and research fields. Various tests for detection and counting of microorganisms are used today. However most of the current methods to enumerate bacteria require either long incubation time for limited accuracy, or use complicated protocols along with bulky equipment. We have developed an accurate, all-fibre spectroscopic system to measure fluorescence signal in-situ. In this paper, we examine the potential of this setup for near real time bacteria enumeration in aquatic environment. The concept is based on a well-known phenomenon that the fluorescence quantum yields of some nucleic acid stains significantly increase upon binding with nucleic acids of microorganisms. In addition we have used GFP labeled organisms. The fluorescence signal increase can be correlated to the amount of nucleic acid present in the sample. In addition we have used GFP labeled organisms. Our results show that we are able to detect a wide range of bacteria concentrations without dilution or filtration (1-108 CFU/ml) using different optical probes we designed. This high sensitivity is due to efficient light delivery with an appropriate collection volume and in situ fluorescence detection as well as the use of a sensitive CCD spectrometer. By monitoring the laser power, we can account for laser fluctuations while measuring the fluorescence signal which improves as well the system accuracy. A synchronized laser shutter allows us to achieve a high SNR with minimal integration time, thereby reducing the photobleaching effect. In summary, we conclude that our optical setup may offer a robust method for near real time bacterial detection in aquatic environment.

  14. Real-time detection of dental calculus by blue-LED-induced fluorescence spectroscopy.

    PubMed

    Qin, Y L; Luan, X L; Bi, L J; Lü, Z; Sheng, Y Q; Somesfalean, G; Zhou, C N; Zhang, Z G

    2007-05-25

    Successful periodontal therapy requires sensitive techniques to discriminate dental calculus from healthy teeth. The aim of the present study was to develop a fluorescence-based procedure to enable real-time detection and quantification of dental calculus. Thirty human teeth--15 teeth with sub- and supragingival calculus and 15 healthy teeth--covered with a layer of physiological saline solution or blood were illuminated by a focused blue LED light source of 405 nm. Autofluorescence spectra recorded along a randomly selected line stretching over the crown-neck-root area of each tooth were utilized to evaluate a so called calculus parameter R, which was selected to define a relationship between the integrated intensities specific for healthy teeth and for calculus in the 477-497 nm (S(A)) and 628-685 nm (S(B)) wavelength regions, respectively. Statistical analysis was performed and a cut-off threshold of R=0.2 was found to distinguish dental calculus from healthy teeth with 100% sensitivity and specificity under various experimental conditions. The results of the spectral evaluation were confirmed by clinical and histological findings. Automated real-time detection and diagnostics for clinical use were implemented by a corresponding software program written in Visual Basic language. The method enables cost-effective and reliable calculus detection, and can be further developed for imaging applications.

  15. Initial formal toxicity evaluation of APC-2, a novel fluorescent tracer agent for real-time measurement of glomerular filtration rate in preparation for a first-in-man clinical trial

    NASA Astrophysics Data System (ADS)

    Bugaj, Joseph E.; Dorshow, Richard B.

    2014-03-01

    The fluorescent tracer agent 2,5-bis[N-(1-carboxy-2-hydroxy)]carbamoyl-3,6-diaminopyrazine, designated APC-2, has been developed with properties and attributes necessary for use as a direct measure of glomerular filtration rate (GFR). Comparison to known standard exogenous GFR agents in animal models has demonstrated an excellent correlation. A clinical trial to demonstrate this same correlation in humans is in preparation. A battery of formal toxicity tests necessary for regulatory clearance to proceed with a clinical trial has been recently completed on this new fluorescent tracer agent. These include single dose toxicity studies in rats and dogs to determine overall toxicity and toxicokinetics of the compound. Blood compatibility, mutation assay, chromosomal aberration assay, and several other assays were also completed. Toxicity assessments were based on mortality, clinical signs, body weight, food consumption and anatomical pathology. Blood samples were collected to assess pharmacokinetic parameters including half-life, area under the curve, and clearance. Urine samples were collected to assess distribution. Doses of up to 200-300 times the estimated human dose were administered. No test-article related effects were noted on body weight, food consumption, ophthalmic observations and no abnormal pathology was seen in either macroscopic or microscopic evaluations of any organs or tissues. All animals survived to scheduled sacrifice. Transient discoloration of skin and urine was noted at the higher dose levels in both species as expected from a highly fluorescent compound and was not considered pathological. Thus initial toxicology studies of this new fluorescent tracer agent APC-2 have resulted in no demonstrable pathological test article concerns.

  16. A fluorescence-based quantitative real-time PCR assay for accurate Pocillopora damicornis species identification

    NASA Astrophysics Data System (ADS)

    Thomas, Luke; Stat, Michael; Evans, Richard D.; Kennington, W. Jason

    2016-09-01

    Pocillopora damicornis is one of the most extensively studied coral species globally, but high levels of phenotypic plasticity within the genus make species identification based on morphology alone unreliable. As a result, there is a compelling need to develop cheap and time-effective molecular techniques capable of accurately distinguishing P. damicornis from other congeneric species. Here, we develop a fluorescence-based quantitative real-time PCR (qPCR) assay to genotype a single nucleotide polymorphism that accurately distinguishes P. damicornis from other morphologically similar Pocillopora species. We trial the assay across colonies representing multiple Pocillopora species and then apply the assay to screen samples of Pocillopora spp. collected at regional scales along the coastline of Western Australia. This assay offers a cheap and time-effective alternative to Sanger sequencing and has broad applications including studies on gene flow, dispersal, recruitment and physiological thresholds of P. damicornis.

  17. Real-time fluorescence loop-mediated isothermal amplification for the diagnosis of hemorrhagic enteritis virus.

    PubMed

    Liu, Xuemei; Li, Yuhao; Xu, Chenggang; Qin, Jianru; Hao, Jianyong; Feng, Min; Tan, Liqiang; Jia, Weixin; Liao, Ming; Cao, Weisheng

    2014-04-01

    Suspected cases of hemorrhagic enteritis associated with hemorrhagic enteritis virus (HEV) are becoming more frequent among yellow chickens in the Guangdong Province of China. In this study, we have developed a one-step, ecumenical, real-time fluorescence loop-mediated isothermal amplification (RealAmp) assay for the rapid diagnosis of HEV. The RealAmp assay was performed at 63°C and reduced the assay time to 15min, using a simple and portable device, the ESE-Quant Tube Scanner. The detection limit of DNA was 1fg/μl, and the detection was specific only to HEV. We also used nested PCR to evaluate the application of the RealAmp assay. The coincidence rate of the two methods was 100%. Our data indicated that the RealAmp assay provides a sensitive, specific, and user-friendly diagnostic tool for the identification and quantification of HEV for field diagnosis and in laboratory research.

  18. Real-time fluorescence assays of alkaline phosphatase and ATP sulfurylase activities based on a novel PPi fluorescent probe.

    PubMed

    Wang, Xiaobo; Zhang, Zhiyang; Ma, Xiaoyan; Wen, Jinghan; Geng, Zhirong; Wang, Zhilin

    2015-05-01

    An anthracene-armed tetraaza macrocyclic fluorescent probe 3-(9-anthrylmethyl)-3,6,9,15-tetraazabicyclo[9.3.1]pentadeca-1(15),11,13-triene(l) for detecting Zn(2+) in aqueous medium was synthesized. L-Zn(2+) complex, showed selectivity toward pyrophosphate ion (PPi) by quenching the fluorescence in aqueous HEPES buffer (pH 7.4). Furthermore, L-Zn(2+) was also used to set up a real-time fluorescence assay for monitoring enzyme activities of alkaline phosphatase (ALP) and adenosine triphosphate sulfurylase (ATPS). In the presence of ALP inhibitor Na3VO4 and ATPS inhibitor chlorate, two enzymes activities decreased obviously, respectively.

  19. Wide-field near-infrared fluorescence endoscope for real-time in vivo imaging

    NASA Astrophysics Data System (ADS)

    Liu, Zhongyao; Miller, Sharon J.; Joshi, Bishnu P.; Wang, Thomas D.

    2012-02-01

    A diode-pumped solid state laser is used to deliver excitation at λex = 671 nm. The beam is expanded by a pair of relay lenses (f1 = 30 and f2 = 50 mm) to 3 mm diameter, filling the aperture of a fluid light cable that is coupled to a Hopkins II rigid endoscope. Near-infrared fluorescence images are collected by the endoscope and transmitted by another set of relay lenses onto a CCD detector that has dimensions of 8.7x6.9 mm2 (1388x1040 pixels). A zoom lens system (F#1.6-16 aperture) with a tunable focal length (20-100 mm) magnifies the image to fill the dimensions of the CCD. A band pass filter allows fluorescence with spectral range λem = 696 to 736 nm to be collected. The system achieves a resolution of 9.8 μm and field-of-view of 3.6 mm at a distance of 2.5 mm between the distal end of the endoscope and the tissue. Images are collected at a rate of 10 frames per second. A filter wheel is incorporated into the handle of the instrument housing to rapidly switch between reflectance and fluorescence images. Cy5.5-labeled peptides were delivered through the 1 mm diameter instrument channel in the endoscope. Near-infrared fluorescence images demonstrated specific peptide binding to spontaneous adenomas that developed beginning at 2 months of age in a genetically-engineered mouse with mutation of one allele in the APC gene. This integrated methodology represents a powerful tool that can achieve real time detection of disease in the colon and other hollow organs.

  20. Real-time monitoring of river water quality using in-line continuous acquisition of fluorescence excitation and emission matrices

    NASA Astrophysics Data System (ADS)

    Carstea, E.; Baker, A.; Johnson, R.; Reynolds, D. M.

    2009-12-01

    In-line fluorescence EEM monitoring has been performed over an eleven-day period for Bournbrook River, Birmingham, UK. River water was diverted to a portable laboratory via a continuous flow pump and filter system. Fluorescence excitation-emission matrices data was recorded every 3 minutes using a flow cell (1cm pathlength) coupled to a fiber optic probe. This real-time fluorescence EEM data (Excitation, 225-400 nm at 5 nm steps, emission, 280-500 nm at 2 nm steps) was collected 'in-line'and directly compared with the spectrophotometric properties and physical and chemical parameters of river water samples collected off-line at known time intervals. Over the monitoring period, minor pollution pulses from cross connections were detected and identified hourly along with a random diesel pollution event. This work addresses the practicalities of measuring and detecting fluorescence EEM in the field and discusses the potential of this technological approach for further understanding important hydrological and biogeochemical processes. Problems associated with fouling and system failure are also reported. Example of the data generated from the continuous fluorescence EEM monitoring.

  1. Real-time Measurements of Biological Particles at Several Continental Sites using the WIBS-4A

    NASA Astrophysics Data System (ADS)

    McMeeking, G. R.; Kok, G. L.; Petters, M. D.; Wright, T.; Hader, J.; Mccubbin, I. B.; Hallar, A. G.; Twohy, C. H.; Toohey, D. W.; DeMott, P. J.; McCluskey, C.; Baumgardner, D.

    2013-12-01

    Biological particles (bacteria, fungi/fungal spores, viruses, algae and fragments of biological material) may play a significant role in modifying cloud properties by acting as ice nuclei and thus have an indirect effect on climate forcing. Little is known, however, regarding the abundance and distribution of biological particles and their importance to cloud microphysics in different environments. On-line, continuous measurement systems offer the potential to measure biological systems at high time resolution and sensitivity, providing greater insight into their distribution in the atmosphere, dispersal mechanisms and potential soures. The WIBS-4A (Wideband Integrated Bioaerosol Sensor) detects fluorescent biological material in real-time associated with individual particles. It measures five properties: a) optical size via light scattering, b) fluorescent emissions in the wavelength range 310-400 following excitation by 280 nm light, c) fluorescent emissions in the wavelength range 420-650 following excitation by 280 nm light, d) fluorescent emissions in the wavelength range 420-650 following excitation by 370 nm light, and e) particle asymmetry factor based on intensities of forward scattered light onto a 4-element detector. Together, these properties aid the classification of sampled particles that contain biofluorophores such as tryptophan or NAD(P)H, which can be found in biological particles. Here we present results from a series of laboratory, ground- and aircraft-based measurements of biological particles using the WIBS-4A. The studies include airborne measurements over the United States, ground-based measurements at a coastal site, an urban site in the southeast US and a high alpine site, and laboratory measurements of a variety of biological and non-biological particles. Our analysis focused on both the characterization of the instrument response as well as an evaluation of its suitability for performing ambient measurements and potential artifacts. We

  2. Real-time fluorescence imaging of the DNA damage repair response during mitosis.

    PubMed

    Miwa, Shinji; Yano, Shuya; Yamamoto, Mako; Matsumoto, Yasunori; Uehara, Fuminari; Hiroshima, Yukihiko; Toneri, Makoto; Murakami, Takashi; Kimura, Hiroaki; Hayashi, Katsuhiro; Yamamoto, Norio; Efimova, Elena V; Tsuchiya, Hiroyuki; Hoffman, Robert M

    2015-04-01

    The response to DNA damage during mitosis was visualized using real-time fluorescence imaging of focus formation by the DNA-damage repair (DDR) response protein 53BP1 linked to green fluorescent protein (GFP) (53BP1-GFP) in the MiaPaCa-2(Tet-On) pancreatic cancer cell line. To observe 53BP1-GFP foci during mitosis, MiaPaCa-2(Tet-On) 53BP1-GFP cells were imaged every 30 min by confocal microscopy. Time-lapse imaging demonstrated that 11.4 ± 2.1% of the mitotic MiaPaCa-2(Tet-On) 53BP1-GFP cells had increased focus formation over time. Non-mitotic cells did not have an increase in 53BP1-GFP focus formation over time. Some of the mitotic MiaPaCa-2(Tet-On) 53BP1-GFP cells with focus formation became apoptotic. The results of the present report suggest that DNA strand breaks occur during mitosis and undergo repair, which may cause some of the mitotic cells to enter apoptosis in a phenomenon possibly related to mitotic catastrophe.

  3. Simultaneous and Real-time Measurement of Gaseous Ammonia and Particulate Ammonium

    NASA Astrophysics Data System (ADS)

    Kang, E.; Lee, J. H.

    2001-05-01

    Gaseous ammonia reacts with acidic gaseous species to neutralize atmospheric acidity and forms ammonium salts. In this neutralization reaction, ammonia is converted to ammonium ion in the particles. It plays an important role as CCN (cloud condensation nuclei) in the cloud formation. Moreover it plays a role on the cooling effect resulting from the reflection of solar radiation back to the space. Therefore, an improved simultaneous and real-time measurement technique for gaseous ammonia/particulate ammonium is needed to study the formation mechanism of CCN. Dual channel system for simultaneous and ream-time measurement of gaseous ammonia/particulate ammonium is described. In the 1st channel both gaseous ammonia/particulate ammonium is collected through a glass coil sampling system without citric acid coated denuder. In the 2nd channel gaseous ammonia is removed from the citric acid coated denuder and only particulate ammonium is collected through a glass coil sampling system. Using continuous flow injection system, collected ammonia (ammonium) reacts with sodium sulfite and o-phthaldialdehyde producing fluorescent product, which is detected by the fluorescence detector. The 1st channel signal represents the sum of gaseous ammonia and particulate ammonium, and the 2nd channel signal with the citric acid coated denuder represents only particulate ammonium. The difference in signal between two channels represents gaseous ammonia. This system shows each signal every second, and the baseline is recorded every 3 or 4 hours. Collection efficiency for gaseous ammonia was determined using consecutive two glass coil samplers. For the 2nd channel, collection efficiency of particulate ammonium is tested adapting consecutive two coil samplers. Gaseous ammonia and particulate ammonium were measured in Kwangju, South Korea at real time by using improved dual channel measurement system, and the detailed results and discussion will be presented in the presentation.

  4. Real-time fluorescence Loop-Mediated Isothermal Amplification (LAMP) for rapid and reliable diagnosis of pulmonary tuberculosis.

    PubMed

    Cao, Donglin; Hu, Liangshan; Lin, Maorui; Li, Mingyou; Ye, Zebing; Sun, Hongtao; Huang, Jiwei; Yang, Huawen; Tian, Junzhang

    2015-02-01

    A reliable, simple and rapid diagnostic method that can be helpful in pulmonary tuberculosis diagnosis is urgently needed. Loop-mediated Isothermal Amplification (LAMP) allows DNA to be amplified rapidly at a constant temperature. In this study, real-time fluorescence LAMP was evaluated to rapidly detect Mycobacterium tuberculosis in sputum and was compared to the performance of real-time fluorescence quantitative PCR (Q-PCR). All the standard MTB strains were successfully detected and limit of detection (LOD) was 10(2)CFU/mL by real-time fluorescence LAMP within 20min. In light of MTB in sputum, the real-time fluorescence LAMP method yielded a sensitivity of 98.0% and a specificity of 78.3%, compared to Q-PCR assay, which yielded a sensitivity of 96.0% and a specificity of 82.6% for PTB diagnosis. There was an excellent overall agreement between LAMP and Q-PCR for PTB (κ=0.315) and non-PTB (κ=0.862). Therefore, the real-time fluorescence LAMP assay is a rapid, sensitive, and specific method to detect pulmonary tuberculosis.

  5. Real-Time Fluorescence Loop Mediated Isothermal Amplification for the Detection of Acinetobacter baumannii

    PubMed Central

    Wang, Qinqin; Zhou, Yanbin; Li, Shaoli; Zhuo, Chao; Xu, Siqi; Huang, Lixia; Yang, Ling; Liao, Kang

    2013-01-01

    Background Detection of Acinetobacter baumannii has been relying primarily on bacterial culture that often fails to return useful results in time. Although DNA-based assays are more sensitive than bacterial culture in detecting the pathogen, the molecular results are often inconsistent and challenged by doubts on false positives, such as those due to system- and environment-derived contaminations. In addition, these molecular tools require expensive laboratory instruments. Therefore, establishing molecular tools for field use require simpler molecular platforms. The loop-mediated isothermal amplification method is relatively simple and can be improved for better use in a routine clinical bacteriology laboratory. A simple and portable device capable of performing both the amplification and detection (by fluorescence) of LAMP in the same platform has been developed in recent years. This method is referred to as real-time loop-mediated isothermal amplification. In this study, we attempted to utilize this method for rapid detection of A. baumannii. Methodology and Significant Findings Species-specific primers were designed to test the utility of this method. Clinical samples of A. baumannii were used to determine the sensitivity and specificity of this system compared to bacterial culture and a polymerase chain reaction method. All positive samples isolated from sputum were confirmed to be the species of Acinetobacter by 16S rRNA gene sequencing. The RealAmp method was found to be simpler and allowed real-time detection of DNA amplification, and could distinguish A. baumannii from Acinetobacter calcoaceticus and Acinetobacter genomic species 3. DNA was extracted by simple boiling method. Compared to bacterial culture, the sensitivity and specificity of RealAmp in detecting A. baumannii was 98.9% and 75.0%, respectively. Conclusion The RealAmp assay only requires a single unit, and the assay positivity can be verified by visual inspection. Therefore, this assay has

  6. Real time swallowing measurement system by using photometric stereo

    NASA Astrophysics Data System (ADS)

    Fujino, Masahiro; Kato, Kunihito; Mura, Emi; Nagai, Hajime

    2015-04-01

    In this paper, we propose a measurement system to evaluate the swallowing by estimating the movement of the thyroid cartilage. We developed a measurement system based on the vision sensor in order to achieve the noncontact and non-invasive sensor. The movement of the subject's thyroid cartilage is tracked by the three dimensional information of the surface of the skin measured by the photometric stereo. We constructed a camera system that uses near-IR light sources and three camera sensors. We conformed the effectiveness of the proposed system by experiments.

  7. Error Correction for Foot Clearance in Real-Time Measurement

    NASA Astrophysics Data System (ADS)

    Wahab, Y.; Bakar, N. A.; Mazalan, M.

    2014-04-01

    Mobility performance level, fall related injuries, unrevealed disease and aging stage can be detected through examination of gait pattern. The gait pattern is normally directly related to the lower limb performance condition in addition to other significant factors. For that reason, the foot is the most important part for gait analysis in-situ measurement system and thus directly affects the gait pattern. This paper reviews the development of ultrasonic system with error correction using inertial measurement unit for gait analysis in real life measurement of foot clearance. This paper begins with the related literature where the necessity of measurement is introduced. Follow by the methodology section, problem and solution. Next, this paper explains the experimental setup for the error correction using the proposed instrumentation, results and discussion. Finally, this paper shares the planned future works.

  8. Real-time precision measuring device of tree diameter growth

    NASA Astrophysics Data System (ADS)

    Guo, Mingming; Chen, Aijun; Li, Dongsheng; Liu, Nan; Yao, Jingyuan

    2016-01-01

    DBH(diameter at breast height) is an important factor to reflect of the quality of plant growth, also an important parameter indispensable in forest resources inventory and forest carbon sink, the accurate measurement of DBH or not is directly related to the research of forest resources inventory and forest carbon sink. In this paper, the principle and the mathematical model of DBH measurement device were introduced, the fixture measuring device and the hardware circuit for this tree diameter were designed, the measurement software programs were compiled, and the precision measuring device of tree diameter growth was developed. Some experiments with Australia fir were conducted. Based on experiment data, the correlations among the DBH variation of Australian fir, the environment temperature, air humility and PAR(photosynthetically active radiation) were obtained. The effects of environmental parameters (environment temperature, air humility and PAR) on tree diameter were analyzed. Experimental results show that there is a positive correlation between DBH variation of Australian fir and environment temperature, a negative correlation between DBH variation of Australian fir and air humility , so is PAR.

  9. Real-time measurement of engine oil economy

    SciTech Connect

    Butler, J.W.; Korniski, T.; Calvin, A.D.; Jary, E.H.

    1987-01-01

    A coulometric SO/sub 2/ monitor has been developed to measure SO/sub 2/ generated from combustion of S in oil to determine engine oil consumption. Sulfur-free fuel is used to eliminate background levels of SO/sub 2/. Addition of an SO/sub 2/ standard gas to the engine during test insures accurate normalization of sampling system flows and quantitative measurement of engine oil economy. Precision of the SO/sub 2/ microcoulometer technique was better than +-8%. The SO/sub 2/ microcoulometer is used during steady state engine operation, and may be used in determining oil consumption from individual cylinders. Existence of engine oil consumption via an aerosol mechanism is investigated and measured. Effects of engine operating temperature and positive crankcase ventilation (PCV) on engine oil economy are given.

  10. Technique for real-time tissue characterization based on scanning multispectral fluorescence lifetime spectroscopy (ms-TRFS)

    PubMed Central

    Ma, Dinglong; Bec, Julien; Gorpas, Dimitris; Yankelevich, Diego; Marcu, Laura

    2015-01-01

    We report a novel technique for continuous acquisition, processing and display of fluorescence lifetimes enabling real-time tissue diagnosis through a single hand held or biopsy fiber-optic probe. A scanning multispectral time-resolved fluorescence spectroscopy (ms-TRFS) with self-adjustable photon detection range was developed to account for the dynamic changes of fluorescence intensity typically encountered in clinical application. A fast algorithm was implemented in the ms-TRFS software platform, providing up to 15 Hz continuous display of fluorescence lifetime values. Potential applications of this technique, including biopsy guidance, and surgical margins delineation were demonstrated in proof-of-concept experiments. Current results showed accurate display of fluorescence lifetimes values and discrimination of distinct fluorescence markers and tissue types in real-time (< 100 ms per data point). PMID:25798320

  11. IN SITU Device for Real-Time Catalyst Deactivation Measurements

    SciTech Connect

    Fossil Energy Research

    2008-03-31

    SCR catalyst management has become an important operations and maintenance activity for coal-fired utility boilers in the United States. To facilitate this activity, a method to determine Catalyst Activity in situ is being developed. This report describes the methodology and presents the results of a two ozone season demonstration conducted at Alabama Power Company's Gorgas Unit 10 during the 2005 and 2006 ozone seasons. The results showed that the in situ measurements are in good agreement with the laboratory measurements and the technique has some advantages over the traditional laboratory method of determining Catalyst Activity and Reactor Potential. SCR Performance is determined by the overall Reactor Potential (the product of the Catalyst Activity and the available surface area per unit of flue gas). The in situ approach provides a direct measurement of Reactor Potential under actual operating conditions, whereas laboratory measurements of Catalyst Activity need to be coupled with estimates of catalyst pluggage and flue gas flowrate in order to assess Reactor Potential. The project also showed that the in situ activity results can easily be integrated into catalyst management software to aid in making informed catalyst decisions.

  12. Adaptive, real-time hypoxia measurements using an autonomous boat

    NASA Astrophysics Data System (ADS)

    Kerkez, B.; Wong, B. P.; Balzano, L.; Lipor, J.; Scavia, D.

    2015-12-01

    We present an autonomous system to measure hypoxia at high spatial resolutions. The approach combines a robotic boat, cloud hosted data services, and a suite of adaptive sampling algorithms to minimize the number of samples required to delineate hypoxic extents. The boat lowers sensors into the water column to provide depth profiles of temperature and oxygen concentrations. An adaptive path-planning algorithm continuously analyzes the in-situ observations and directs the boat to its next measurement location. This significantly reduces number of samples compared to a gridded sampling approach, while simultaneously improving the certainty with which the hypoxic regions are delineated. The method has been evaluated on small lakes throughout Michigan and shows significant promise to scale to the Great Lakes, where hypoxia is common occurrence that adversely affects various stakeholder and ecosystems.

  13. Hilbert phase dynamometry (HPD) for real-time measurement of cell generated forces (Conference Presentation)

    NASA Astrophysics Data System (ADS)

    Sridharan, Shamira; Li, Yanfen; Bhaduri, Basanta; Majeed, Hassaan; Dupenloup, Paul; Levine, Alex; Kilian, Kristopher A.; Popescu, Gabriel

    2016-03-01

    Traction force microscopy is the most widely used technique for studying the forces exerted by cells on deformable substrates. However, the method is computationally intense and cells have to be detached from the substrate prior to measuring the displacement map. We have developed a new method, referred to as Hilbert phase dynamometry (HPD), which yields real-time force fields and, simultaneously, cell dry mass and growth information. HPD operates by imaging cells on a deformable substrate that is patterned with a grid of fluorescent proteins. A Hilbert transform is used to extract the phase map associated with the grid deformation, which provides the displacement field. By combining this information with substrate stiffness, an elasticity model was developed to measure forces exerted by cells with high spatial resolution. In our study, we prepared 10kPa gels and them with a 2-D grid of FITC-conjugated fibrinogen/fibronectin mixture, an extracellular matrix protein to which cells adhere. We cultured undifferentiated mesenchymal stem cells (MSC), and MSCs that were in the process of undergoing adipogenesis and osteogenesis. The cells were measured over the course of 24 hours using Spatial Light Interference Microscopy (SLIM) and wide-field epi-fluorescence microscopy allowing us to simultaneously measure cell growth and the forces exerted by the cells on the substrate.

  14. Rapid detection of group B streptococcus and Escherichia coli in amniotic fluid using real-time fluorescent PCR.

    PubMed Central

    Straka, Michele; Dela Cruz, Wifred; Blackmon, Camille; Johnson, Oswald; Stassen, Sara; Streitman, David; Golden, Stephen; Stamilio, David

    2004-01-01

    OBJECTIVE: To establish reliability and validity of real-time fluorescent PCR for early detection of bacterial invasion of the amniotic cavity. METHODS: Amniotic fluid samples from 40 patients undergoing mid-trimester genetic amniocentesis were incubated for 6 h at 37 degrees C and were cultured on media specific for group B streptococcus (GBS) and E. coli. Concurrently, samples were analyzed with real-time fluorescent PCR (Roche LightCycler) using DNA primers and probes designed to detect the CAMP factor encoding cfb gene and uidA gene of GBS and E. coli, respectively. For positive control and to simulate amniotic fluid colonization, 104 cfu/ml of GBS and E. coli were inoculated on sterile amniotic fluid and incubated for 6 h. Bacterial genomic DNA for the two organisms was extracted and purified via the two-step precipitation method using a commercial kit. The real-time PCR assays were also tested against 25 non-GBS and non-E. coli bacterial species. The lower limit of detection for each pathogen was established using serial dilution of bacterial genomic DNA. RESULTS: All patient samples were negative for evidence of GBS and E. coli with both culture and real-time PCR methods. Amniotic fluid samples inoculated with GBS and E. coli were positive with real-time PCR whereas the 25 bacterial species other than GBS or E. coli tested negative with the assay. Average total sample processing time including the pre-enrichment step was 7 h 40 min. The average cost for DNA extraction and PCR testing was 8.50 dollars per test. CONCLUSION: Real-time fluorescent PCR is a valid and reliable method for detection of specific pathogens in amniotic fluid. This technique is sensitive for low inoculation levels. Real-time fluorescent PCR has potential to impact clinical management as a rapid, reliable detection method for GBS and E. coli in chorioamnionitis. PMID:15763909

  15. Fluorescence interference contrast based approach to study real time interaction of melittin with plasma membranes

    NASA Astrophysics Data System (ADS)

    Gupta, Sharad; Gui, Dong; Zandi, Roya; Gill, Sarjeet; Mohideen, Umar

    2014-03-01

    Melittin is an anti-bacterial and hemolytic toxic peptide found in bee venom. Cell lysis behavior of peptides has been widely investigated, but the exact interaction mechanism of lytic peptides with lipid membranes and its constituents has not been understood completely. In this paper we study the melittin interaction with lipid plasma membranes in real time using non-invasive and non-contact fluorescence interference contrast microscopy (FLIC). Particularly the interaction of melittin with plasma membranes was studied in a controlled molecular environment, where these plasma membrane were composed of saturated lipid, 1,2-diphytanoyl-sn-glycero-3-phosphocholine (DPhPC) and unsaturated lipid, 1,2-dioleoyl-sn-glycero-3-phosphocholine(DOPC) with and without cholesterol. We found out that melittin starts to form nanometer size pores in the plasma membranes shortly after interacting with membranes. But the addition of cholesterol in plasma membrane slows down the pore formation process. Our results show that inclusion of cholesterol to the plasma membranes make them more resilient towards pore formation and lysis of membrane.

  16. Signal-amplification and real-time fluorescence anisotropy detection of apyrase by carbon nanoparticle.

    PubMed

    Liu, Jinhua; Yu, Jing; Chen, Jianrong; Yang, Ronghua; Shih, Kaimin

    2014-05-01

    Carbon nanomaterial combined with aptamer has been developed as an efficient bioanalytical method in sensor design. Herein, depending on carbon nanoparticle (cCNP)-enhanced fluorescence anisotropy (FA), a novel aptamer-based sensor (aptasensor) enabling signal-amplification and real-time detection of apyrase is reported. The foundation of our sensor design based on ATP-aptamer(P) can be adsorbed on the surface of cCNPs, resulting in the increase of FA due to the mass of cCNPs, and P-ATP complex has weak binding ability to cCNPs with minimal change of FA. Apyrase, being an integral membrane protein, can hydrolyze ATP and make P-ATP complex disassemble, and thus lead to the increasing of FA. Therefore, this approach is demonstrated to be a novel candidate for the detection of apyrase, with high sensitivity and selectivity. The linear dynamic range for the concentrations of apyrase is between 0.1 and 0.5 U/μL along with a detection limit of 0.05 U/μL. Furthermore, these results indicated that our design is a flexible and sensitive method for biomolecule analysis, which makes it promising for practical biomolecule analyses.

  17. Laser-induced radiation microbeam technology and simultaneous real-time fluorescence imaging in live cells.

    PubMed

    Botchway, Stanley W; Reynolds, Pamela; Parker, Anthony W; O'Neill, Peter

    2012-01-01

    The use of nano- and microbeam techniques to induce and identify subcellular localized energy deposition within a region of a living cell provides a means to investigate the effects of low radiation doses. Particularly within the nucleus where the propagation and processing of deoxyribonucleic acid (DNA) damage (and repair) in both targeted and nontargeted cells, the latter being able to study cell-cell (bystander) effects. We have pioneered a near infrared (NIR) femtosecond laser microbeam to mimic ionizing radiation through multiphoton absorption within a 3D femtoliter volume of a highly focused Gaussian laser beam. The novel optical microbeam mimics both complex ionizing and UV-radiation-type cell damage including double strand breaks (DSBs). Using the microbeam technology, we have been able to investigate the formation of DNA DSB and subsequent recruitment of repair proteins to the submicrometer size site of damage introduced in viable cells. The use of a phosphorylated H2AX (γ-H2AX a marker for DSBs, visualized by immunofluorescent staining) and real-time imaging of fluorescently labeling proteins, the dynamics of recruitment of repair proteins in viable mammalian cells can be observed. Here we show the recruitment of ATM, p53 binding protein 1 (53BP1), and RAD51, an integral protein of the homologous recombination process in the DNA repair pathway and Ku-80-GFP involved in the nonhomologous end joining (NHEJ) pathway as exemplar repair process to show differences in the repair kinetics of DNA DSBs. The laser NIR multiphoton microbeam technology shows persistent DSBs at later times post laser irradiation which are indicative of DSBs arising at replication presumably from UV photoproducts or clustered damage containing single strand breaks (SSBs) that are also observed. Effects of the cell cycle may also be investigated in real time. Postirradiation and fixed cells studies show that in G1 cells a fraction of multiphoton laser-induced DSBs is persistent for >6h

  18. A real-time single sperm tracking, laser trapping, and ratiometric fluorescent imaging system

    NASA Astrophysics Data System (ADS)

    Shi, Linda Z.; Botvinick, Elliot L.; Nascimento, Jaclyn; Chandsawangbhuwana, Charlie; Berns, Michael W.

    2006-08-01

    Sperm cells from a domestic dog were treated with oxacarbocyanine DiOC II(3), a ratiometrically-encoded membrane potential fluorescent probe in order to monitor the mitochondria stored in an individual sperm's midpiece. This dye normally emits a red fluorescence near 610 nm as well as a green fluorescence near 515 nm. The ratio of red to green fluorescence provides a substantially accurate and precise measurement of sperm midpiece membrane potential. A two-level computer system has been developed to quantify the motility and energetics of sperm using video rate tracking, automated laser trapping (done by the upper-level system) and fluorescent imaging (done by the lower-level system). The communication between these two systems is achieved by a networked gigabit TCP/IP cat5e crossover connection. This allows for the curvilinear velocity (VCL) and ratio of the red to green fluorescent images of individual sperm to be written to the hard drive at video rates. This two-level automatic system has increased experimental throughput over our previous single-level system (Mei et al., 2005) by an order of magnitude.

  19. SNSMIL, a real-time single molecule identification and localization algorithm for super-resolution fluorescence microscopy

    PubMed Central

    Tang, Yunqing; Dai, Luru; Zhang, Xiaoming; Li, Junbai; Hendriks, Johnny; Fan, Xiaoming; Gruteser, Nadine; Meisenberg, Annika; Baumann, Arnd; Katranidis, Alexandros; Gensch, Thomas

    2015-01-01

    Single molecule localization based super-resolution fluorescence microscopy offers significantly higher spatial resolution than predicted by Abbe’s resolution limit for far field optical microscopy. Such super-resolution images are reconstructed from wide-field or total internal reflection single molecule fluorescence recordings. Discrimination between emission of single fluorescent molecules and background noise fluctuations remains a great challenge in current data analysis. Here we present a real-time, and robust single molecule identification and localization algorithm, SNSMIL (Shot Noise based Single Molecule Identification and Localization). This algorithm is based on the intrinsic nature of noise, i.e., its Poisson or shot noise characteristics and a new identification criterion, QSNSMIL, is defined. SNSMIL improves the identification accuracy of single fluorescent molecules in experimental or simulated datasets with high and inhomogeneous background. The implementation of SNSMIL relies on a graphics processing unit (GPU), making real-time analysis feasible as shown for real experimental and simulated datasets. PMID:26098742

  20. Real-time monitoring of the mitophagy process by a photostable fluorescent mitochondrion-specific bioprobe with AIE characteristics.

    PubMed

    Zhang, Weijie; Kwok, Ryan T K; Chen, Yilong; Chen, Sijie; Zhao, Engui; Yu, Chris Y Y; Lam, Jacky W Y; Zheng, Qichang; Tang, Ben Zhong

    2015-05-28

    An isothiocyanate-functionalized tetraphenylethene is synthesized and used as a fluorescent bioprobe for mitochondrion imaging with high specificity and photostability. The covalent conjugation of the bioprobe to mitochondrial proteins endows it with high resistance to microenvironmental changes, enabling it for real-time monitoring of mitophagy.

  1. AUTOMATED CONTROL AND REAL-TIME DATA PROCESSING OF WIRE SCANNER/HALO SCRAPER MEASUREMENTS

    SciTech Connect

    L.A. DAY; J.D. GILPATRICK; ET AL

    2001-06-01

    The Low-Energy Demonstration Accelerator (LEDA), assembled and operating at Los Alamos National Laboratory, provides the platform for obtaining measurements of high-power proton beam-halo formation. Control system software and hardware have been integrated and customized to enable the production of real-time beam-halo profiles. The Experimental Physics and Industrial Control System (EPICS) hosted on a VXI platform, Interactive Data Language (IDL) programs hosted on UNIX platforms, and LabVIEW (LV) Virtual Instruments hosted on a PC platform have been integrated and customized to provide real-time, synchronous motor control, data acquisition, and data analysis of data acquired through specialized DSP instrumentation. These modules communicate through EPICS Channel Access (CA) communication protocol extensions to control and manage execution flow ensuring synchronous data acquisition and real-time processing of measurement data. This paper describes the software integration and management scheme implemented to produce these real-time beam profiles.

  2. Real time in vivo investigation of superoxide dynamics in zebrafish liver using a single-fiber fluorescent probe

    PubMed Central

    Chang, Yu-Chung; Ken, Chuian-Fu; Hsu, Che-Wei; Liu, Ya-Ging

    2013-01-01

    Superoxide anion is the key radical that causes intracellular oxidative stress. The lack of a method to directly monitor superoxide concentration in vivo in real time has severely hindered our understanding on its pathophysiology. We made transgenic zebrafish to specifically express yellow fluorescent proteins, a reversible superoxide-specific indicator, in the liver and used a fiber-optic fluorescent probe to noninvasively monitor the superoxide concentration in real time. Several superoxide-inducing and scavenging reagents were administrated onto the fish to alter superoxide concentrations. The distinct biochemical pathways of the reagents can be discerned from the transient behaviors of fluorescence time courses. These results demonstrate the feasibility of this method for analyzing superoxide dynamics and its potential as an in vivo pharmaceutical screening platform. PMID:24049691

  3. Method and apparatus for real-time measurement of fuel gas compositions and heating values

    DOEpatents

    Zelepouga, Serguei; Pratapas, John M.; Saveliev, Alexei V.; Jangale, Vilas V.

    2016-03-22

    An exemplary embodiment can be an apparatus for real-time, in situ measurement of gas compositions and heating values. The apparatus includes a near infrared sensor for measuring concentrations of hydrocarbons and carbon dioxide, a mid infrared sensor for measuring concentrations of carbon monoxide and a semiconductor based sensor for measuring concentrations of hydrogen gas. A data processor having a computer program for reducing the effects of cross-sensitivities of the sensors to components other than target components of the sensors is also included. Also provided are corresponding or associated methods for real-time, in situ determination of a composition and heating value of a fuel gas.

  4. Real-time remote detection and measurement for airborne imaging spectroscopy: a case study with methane

    NASA Astrophysics Data System (ADS)

    Thompson, D. R.; Leifer, I.; Bovensmann, H.; Eastwood, M.; Fladeland, M.; Frankenberg, C.; Gerilowski, K.; Green, R. O.; Kratwurst, S.; Krings, T.; Luna, B.; Thorpe, A. K.

    2015-06-01

    Localized anthropogenic sources of atmospheric CH4 are highly uncertain and temporally variable. Airborne remote measurement is an effective method to detect and quantify these emissions. In a campaign context, the science yield can be dramatically increased by real-time retrievals that allow operators to coordinate multiple measurements of the most active areas. This can improve science outcomes for both single- and multiple-platform missions. We describe a case study of the NASA/ESA CO2 and Methane Experiment (COMEX) campaign in California during June and August/September 2014. COMEX was a multi-platform campaign to measure CH4 plumes released from anthropogenic sources including oil and gas infrastructure. We discuss principles for real-time spectral signature detection and measurement, and report performance on the NASA Next Generation Airborne Visible Infrared Spectrometer (AVIRIS-NG). AVIRIS-NG successfully detected CH4 plumes in real-time at Gb s-1 data rates, characterizing fugitive releases in concert with other in situ and remote instruments. The teams used these real-time CH4 detections to coordinate measurements across multiple platforms, including airborne in situ, airborne non-imaging remote sensing, and ground-based in situ instruments. To our knowledge this is the first reported use of real-time trace gas signature detection in an airborne science campaign, and presages many future applications.

  5. Real-time monitoring of the penetration of amphiphilic acrylate copolymer in leather using a fluorescent copolymer as tracer.

    PubMed

    Du, Jin-Xia; Shi, Lu; Peng, Bi-Yu

    2015-12-01

    A fluorescent tracer, poly (acrylic-co-stearyl acrylate-co-3-acryloyl fluorescein) [poly (AA-co-SA-co-Ac-Flu)], used for real-time monitoring the penetration of amphiphilic acrylate copolymer, poly (acrylic-co-stearyl acrylate) [poly (AA-co-SA)], in leather was synthesized by radical polymerization of acrylic, stearyl acrylate and fluorescent monomer, 3-acryloyl fluorescein (Ac-Flu). The structure, molecular weight, introduced fluorescent group content and fluorescent characteristics of the fluorescent tracer and target copolymer, amphiphilic acrylate copolymer, were also characterized. The results show that the tracer presents the similar structural characteristics to the target and enough fluorescence intensity with 1.68 wt % of the fluorescent monomer introduced amount. The vertical section of the leather treated with the target copolymer mixing with 7% of the tracer exhibits evident fluorescence, and the change of fluorescence intensity along with the vertical section with treating time increasing can reflect the penetration depth of the target copolymer. The introduction of the fluorescent group in polymer structure through copolymerization with a limited amount of fluorescent monomer, Ac-Flu, is an effective way to make a tracer to monitor the penetration of the target in leather, which provides a new thought for the penetration research of syntans such as vinyl copolymer materials in leather manufacture.

  6. Bioinspired fluorescent dipeptide nanoparticles for targeted cancer cell imaging and real-time monitoring of drug release

    NASA Astrophysics Data System (ADS)

    Fan, Zhen; Sun, Leming; Huang, Yujian; Wang, Yongzhong; Zhang, Mingjun

    2016-04-01

    Peptide nanostructures are biodegradable and are suitable for many biomedical applications. However, to be useful imaging probes, the limited intrinsic optical properties of peptides must be overcome. Here we show the formation of tryptophan–phenylalanine dipeptide nanoparticles (DNPs) that can shift the peptide's intrinsic fluorescent signal from the ultraviolet to the visible range. The visible emission signal allows the DNPs to act as imaging and sensing probes. The peptide design is inspired by the red shift seen in the yellow fluorescent protein that results from π–π stacking and by the enhanced fluorescence intensity seen in the green fluorescent protein mutant, BFPms1, which results from the structure rigidification by Zn(II). We show that DNPs are photostable, biocompatible and have a narrow emission bandwidth and visible fluorescence properties. DNPs functionalized with the MUC1 aptamer and doxorubicin can target cancer cells and can be used to image and monitor drug release in real time.

  7. Bioinspired fluorescent dipeptide nanoparticles for targeted cancer cell imaging and real-time monitoring of drug release

    NASA Astrophysics Data System (ADS)

    Fan, Zhen; Sun, Leming; Huang, Yujian; Wang, Yongzhong; Zhang, Mingjun

    2016-04-01

    Peptide nanostructures are biodegradable and are suitable for many biomedical applications. However, to be useful imaging probes, the limited intrinsic optical properties of peptides must be overcome. Here we show the formation of tryptophan-phenylalanine dipeptide nanoparticles (DNPs) that can shift the peptide's intrinsic fluorescent signal from the ultraviolet to the visible range. The visible emission signal allows the DNPs to act as imaging and sensing probes. The peptide design is inspired by the red shift seen in the yellow fluorescent protein that results from π-π stacking and by the enhanced fluorescence intensity seen in the green fluorescent protein mutant, BFPms1, which results from the structure rigidification by Zn(II). We show that DNPs are photostable, biocompatible and have a narrow emission bandwidth and visible fluorescence properties. DNPs functionalized with the MUC1 aptamer and doxorubicin can target cancer cells and can be used to image and monitor drug release in real time.

  8. Next generation ligand binding assays-review of emerging real-time measurement technologies.

    PubMed

    Fraser, Stephanie; Cameron, Mark; O'Connor, Edward; Schwickart, Martin; Tanen, Michael; Ware, Mark

    2014-09-01

    Over the last few years, numerous ligand binding assay technologies that utilize real-time measurement have been introduced; however, an assemblage and evaluation of these technologies has not previously been published. Herein, we describe six emerging real-time measurement technologies: Maverick™, MX96 SPR™, NanoDLSay™, AMMP®/ViBE®, SoPrano™, and two Lab-on-a-Chip (LoC) microfluidic devices. The development stage gate of these technologies ranges from pre-commercial to commercially available. Due to the novelty, the application and utility of some of the technologies regarding bioanalysis are likely to evolve but it is our hope that this review will provide insight into the direction the development of real-time measurement technologies is moving and the vision of those that are taking us there. Following the technology discussions, a comprehensive summary table is presented.

  9. Real-time intermembrane force measurements and imaging of lipid domain morphology during hemifusion

    NASA Astrophysics Data System (ADS)

    Lee, Dong Woog; Kristiansen, Kai; Donaldson, Stephen H., Jr.; Cadirov, Nicholas; Banquy, Xavier; Israelachvili, Jacob N.

    2015-05-01

    Membrane fusion is the core process in membrane trafficking and is essential for cellular transport of proteins and other biomacromolecules. During protein-mediated membrane fusion, membrane proteins are often excluded from the membrane-membrane contact, indicating that local structural transformations in lipid domains play a major role. However, the rearrangements of lipid domains during fusion have not been thoroughly examined. Here using a newly developed Fluorescence Surface Forces Apparatus (FL-SFA), migration of liquid-disordered clusters and depletion of liquid-ordered domains at the membrane-membrane contact are imaged in real time during hemifusion of model lipid membranes, together with simultaneous force-distance and lipid membrane thickness measurements. The load and contact time-dependent hemifusion results show that the domain rearrangements decrease the energy barrier to fusion, illustrating the significance of dynamic domain transformations in membrane fusion processes. Importantly, the FL-SFA can unambiguously correlate interaction forces and in situ imaging in many dynamic interfacial systems.

  10. Real-time intermembrane force measurements and imaging of lipid domain morphology during hemifusion

    PubMed Central

    Lee, Dong Woog; Kristiansen, Kai; Donaldson, Jr., Stephen H.; Cadirov, Nicholas; Banquy, Xavier; Israelachvili, Jacob N.

    2015-01-01

    Membrane fusion is the core process in membrane trafficking and is essential for cellular transport of proteins and other biomacromolecules. During protein-mediated membrane fusion, membrane proteins are often excluded from the membrane–membrane contact, indicating that local structural transformations in lipid domains play a major role. However, the rearrangements of lipid domains during fusion have not been thoroughly examined. Here using a newly developed Fluorescence Surface Forces Apparatus (FL-SFA), migration of liquid-disordered clusters and depletion of liquid-ordered domains at the membrane–membrane contact are imaged in real time during hemifusion of model lipid membranes, together with simultaneous force–distance and lipid membrane thickness measurements. The load and contact time-dependent hemifusion results show that the domain rearrangements decrease the energy barrier to fusion, illustrating the significance of dynamic domain transformations in membrane fusion processes. Importantly, the FL-SFA can unambiguously correlate interaction forces and in situ imaging in many dynamic interfacial systems. PMID:26006266

  11. Cancer cell-targeted two-photon fluorescence probe for the real-time ratiometric imaging of DNA damage.

    PubMed

    Zhang, Hua; Wang, Kui; Xuan, Xiaopeng; Lv, Qingzhang; Nie, Yamin; Guo, Haiming

    2016-05-01

    Real-time imaging of DNA damage in cancer cells could provide valuable information on the formation and development of cancer. Herein, a two-photon fluorescence probe was discovered. Through sequential ICT processes, it allows successful in vivo visualization of DNA damage in cancer cells by one/two-photon microscopic imaging or by the unaided eye and a hand-held ultraviolet lamp. PMID:27087314

  12. Real-time quantitation of Cu(II) by a fluorescence-based biosensing approach

    NASA Astrophysics Data System (ADS)

    Thompson, Richard B.; Zeng, Hui-Hui; Maliwal, Badri P.; Fierke, Carol A.

    2001-05-01

    Recently, there has been substantial interest in reducing the levels of toxic heavy metals in wastewater effluents from activities such as shipyards. Of particular interest is copper, which comprises tens of percent by weight of the hundreds of pounds of antifouling paint coating the bottom of a large vessel, but which is toxic to commercially important shellfish at sub-part per billion levels. As a result wastewater effluents must be monitored closely with sensor(s) capable of rapidly and accurately detecting excess copper in time to prevent release. We have pursued a fluorescence-based biosensing approach to obtain sub-ppb sensitivity for Cu(II) and immunity from interference from other cations abundant in sea water, such as Ca, Mg, and Sr. Our approach uses a protein, apocarbonic anhydrase II, as a very sensitive and selective ligand for Cu(II) which transduces the (reversible) binding of the metal as a change in fluorescence intensity, lifetime, or anisotropy, the first two of which may be conveniently measured through optical fiber. Thus we have been able to measure sub-ppb levels of Cu added to sea water, and to characterize the speciation of the Cu(II) to some degree, due to the presence of other ligands.

  13. High Throughput Gene Expression Measurement with Real Time PCR in a Microfluidic Dynamic Array

    PubMed Central

    Spurgeon, Sandra L.; Jones, Robert C.; Ramakrishnan, Ramesh

    2008-01-01

    We describe a high throughput gene expression platform based on microfluidic dynamic arrays. This system allows 2,304 simultaneous real time PCR gene expression measurements in a single chip, while requiring less pipetting than is required to set up a 96 well plate. We show that one can measure the expression of 45 different genes in 18 tissues with replicates in a single chip. The data have excellent concordance with conventional real time PCR and the microfluidic dynamic arrays show better reproducibility than commercial DNA microarrays. PMID:18301740

  14. An optical real-time 3D measurement for analysis of facial shape and movement

    NASA Astrophysics Data System (ADS)

    Zhang, Qican; Su, Xianyu; Chen, Wenjing; Cao, Yiping; Xiang, Liqun

    2003-12-01

    Optical non-contact 3-D shape measurement provides a novel and useful tool for analysis of facial shape and movement in presurgical and postsurgical regular check. In this article we present a system, which allows a precise 3-D visualization of the patient's facial before and after craniofacial surgery. We discussed, in this paper, the real time 3-D image capture, processing and the 3-D phase unwrapping method to recover complex shape deformation when the movement of the mouth. The result of real-time measurement for facial shape and movement will be helpful for the more ideal effect in plastic surgery.

  15. Fluorescence-based enhanced reality (FLER) for real-time estimation of bowel perfusion in minimally invasive surgery

    NASA Astrophysics Data System (ADS)

    Diana, Michele

    2016-03-01

    Pre-anastomotic bowel perfusion is a key factor for a successful healing process. Clinical judgment has limited accuracy to evaluate intestinal microperfusion. Fluorescence videography is a promising tool for image-guided intraoperative assessment of the bowel perfusion at the future anastomotic site in the setting of minimally invasive procedures. The standard configuration for fluorescence videography includes a Near-Infrared endoscope able to detect the signal emitted by a fluorescent dye, more frequently Indocyanine Green (ICG), which is administered by intravenous injection. Fluorescence intensity is proportional to the amount of fluorescent dye diffusing in the tissue and consequently is a surrogate marker of tissue perfusion. However, fluorescence intensity alone remains a subjective approach and an integrated computer-based analysis of the over-time evolution of the fluorescence signal is required to obtain quantitative data. We have developed a solution integrating computer-based analysis for intra-operative evaluation of the optimal resection site, based on the bowel perfusion as determined by the dynamic fluorescence intensity. The software can generate a "virtual perfusion cartography", based on the "fluorescence time-to-peak". The virtual perfusion cartography can be overlapped onto real-time laparoscopic images to obtain the Enhanced Reality effect. We have defined this approach FLuorescence-based Enhanced Reality (FLER). This manuscript describes the stepwise development of the FLER concept.

  16. Real-time fluorescent quantitative RT-PCR assay for the expression of metallothioneins in rat hippocampal neurons

    NASA Astrophysics Data System (ADS)

    Qin, Hai-Hong; Wang, Fu-Di; Guo, Jun-Sheng; Shen, Hui; Li, Run-Ping

    2004-07-01

    Metallothioneins (MTs) are short, cysteine-rich proteins for heavy metal homeostasis and detoxification; they can bind a variety of heavy metals and also act as radical scavengers. In brain cells, they play a neuroprotective role in many aspects. However, because the previous methods can't quantify their gene expression at the mRNA level, their regulation in brain, especially in neurons, is not well known by now. In this study, we use a more accurate method, the real-time fluorescent quantitative RT-PCR technique, to determine the expression of three MT isomers on 100 μM zinc exposure after 0, 2, 4, 6 and 8 hours in primary culture rat hippocampal neurons. The result shows that the expression of all three MT isomers was higher compared with the values determined by other methods. This means that the roles played by neuron MTs in protecting neurons injury on zinc fluctuation was even stronger than what has been suspected before. In conclusion, our study proved that the real-time fluorescent quantitative RT-PCR technique is a simple, rapid and more precise method than previous techniques in the detection of gene expression, especially for those genes with low abundant mRNA. Our study also suggest that may of the past studies about gene expression should be verified by real-time Fluorescent quantitative RT-PCR once more in order to reach a more scientific explanation on certain problem.

  17. Near infrared fluorescence-guided real-time endoscopic detection of peritoneal ovarian cancer nodules using intravenously injected indocyanine green.

    PubMed

    Kosaka, Nobuyuki; Mitsunaga, Makoto; Longmire, Michelle R; Choyke, Peter L; Kobayashi, Hisataka

    2011-10-01

    Near infrared fluorescence-guidance can be used for the detection of small cancer metastases and can aid in the endoscopic management of cancer. Indocyanine green (ICG) is a Food and Drug Administration (FDA)-approved fluorescence agent. Through non-specific interactions with serum proteins, ICG achieves enhanced permeability and retention (EPR) effects. Yet, ICG demonstrates rapid clearance from the circulation. Therefore, ICG may be an ideal contrast agent for real-time fluorescence imaging of tumors. To evaluate the usefulness of real-time dual fluorescence and white light endoscopic optical imaging to detect tumor implants using the contrast agent ICG, fluorescence-guided laparoscopic procedures were performed in mouse models of peritoneally disseminated ovarian cancers. Animals were administered intravenous ICG or a control contrast agent, IR800-conjugated to albumin. The ability to detect small ovarian cancer implants was then compared. Using the dual view microendoscope, ICG clearly enabled visualization of peritoneal ovarian cancer metastatic nodules derived from SHIN3 and OVCAR5 cells at 6 and 24 hr after injection with significantly higher tumor-to-background ratio than the control agent, IR800-albumin (p < 0.001). In conclusion, ICG has the desirable properties of having both EPR effects and rapid clearance for the real-time endoscopic detection of tiny ovarian cancer peritoneal implants compared to a control macromolecular agent with theoretically better EPR effects but longer circulatory retention. Given that ICG is already FDA-approved and has a long track record of human use, this method could be easily translated to the clinic as a robust tool for fluorescence-guided endoscopic procedures for the management and treatment of cancer.

  18. Real-time autocorrelator for fluorescence correlation spectroscopy based on graphical-processor-unit architecture: method, implementation, and comparative studies

    NASA Astrophysics Data System (ADS)

    Laracuente, Nicholas; Grossman, Carl

    2013-03-01

    We developed an algorithm and software to calculate autocorrelation functions from real-time photon-counting data using the fast, parallel capabilities of graphical processor units (GPUs). Recent developments in hardware and software have allowed for general purpose computing with inexpensive GPU hardware. These devices are more suited for emulating hardware autocorrelators than traditional CPU-based software applications by emphasizing parallel throughput over sequential speed. Incoming data are binned in a standard multi-tau scheme with configurable points-per-bin size and are mapped into a GPU memory pattern to reduce time-expensive memory access. Applications include dynamic light scattering (DLS) and fluorescence correlation spectroscopy (FCS) experiments. We ran the software on a 64-core graphics pci card in a 3.2 GHz Intel i5 CPU based computer running Linux. FCS measurements were made on Alexa-546 and Texas Red dyes in a standard buffer (PBS). Software correlations were compared to hardware correlator measurements on the same signals. Supported by HHMI and Swarthmore College

  19. In vitro Real-time Measurement of the Intra-bacterial Redox Potential

    PubMed Central

    van der Heijden, Joris; Finlay, B. Brett

    2016-01-01

    All bacteria that live in oxygenated environments have to deal with oxidative stress caused by some form of exogenous or endogenous reactive oxygen species (ROS) (Imlay, 2013). Large quantities of ROS damage DNA, lipids and proteins which can eventually lead to bacterial cell death (Imlay, 2013). In contrast, smaller quantities of ROS can play more sophisticated roles in cellular signalling pathways affecting almost every process in the bacterial cell e.g. metabolism, stress responses, transcription, protein synthesis, etc. Previously, inadequate analytical methods prevented appropriate analysis of the intra-bacterial redox potential. Herein, we describe a method for the measurement of real-time changes to the intra-bacterial redox potential using redox-sensitive GFP (roGFP2) (van der Heijden et al., 2015). The roGFP2 protein is engineered to contain specific cysteine residues that form an internal disulfide bridge upon oxidation which results in a slight shift in protein conformation (Hanson et al., 2004). This shift results in two distinct protein isoforms with different fluorescence excitation spectra after excitation at 405 nm and 480 nm respectively. Consequently, the corresponding 405/480 nm ratio can be used as a measure for the intra-bacterial redox potential. The ratio-metric analysis excludes variations due to differences in roGFP2 concentrations and since the conformational shift is reversible the system allows for measurement of oxidizing as well as reducing conditions. In this protocol we describe the system by measuring the intra-bacterial redox potential inside Salmonella typhimurium (S. typhimurium) however this system can be adjusted for use in other Gram-negative bacteria.

  20. In vitro Real-time Measurement of the Intra-bacterial Redox Potential

    PubMed Central

    van der Heijden, Joris; Finlay, B. Brett

    2016-01-01

    All bacteria that live in oxygenated environments have to deal with oxidative stress caused by some form of exogenous or endogenous reactive oxygen species (ROS) (Imlay, 2013). Large quantities of ROS damage DNA, lipids and proteins which can eventually lead to bacterial cell death (Imlay, 2013). In contrast, smaller quantities of ROS can play more sophisticated roles in cellular signalling pathways affecting almost every process in the bacterial cell e.g. metabolism, stress responses, transcription, protein synthesis, etc. Previously, inadequate analytical methods prevented appropriate analysis of the intra-bacterial redox potential. Herein, we describe a method for the measurement of real-time changes to the intra-bacterial redox potential using redox-sensitive GFP (roGFP2) (van der Heijden et al., 2015). The roGFP2 protein is engineered to contain specific cysteine residues that form an internal disulfide bridge upon oxidation which results in a slight shift in protein conformation (Hanson et al., 2004). This shift results in two distinct protein isoforms with different fluorescence excitation spectra after excitation at 405 nm and 480 nm respectively. Consequently, the corresponding 405/480 nm ratio can be used as a measure for the intra-bacterial redox potential. The ratio-metric analysis excludes variations due to differences in roGFP2 concentrations and since the conformational shift is reversible the system allows for measurement of oxidizing as well as reducing conditions. In this protocol we describe the system by measuring the intra-bacterial redox potential inside Salmonella typhimurium (S. typhimurium) however this system can be adjusted for use in other Gram-negative bacteria. PMID:27617271

  1. Real-time Fluorescence Polarization Microscopy of the Moving Boundary in Cross-Gradient SDS-PAGE

    NASA Astrophysics Data System (ADS)

    Hwang, Jeeseong; Giulian, Gary

    2003-03-01

    Real-time Fluorescence Polarization Microscopy of the Moving Boundary in Cross-Gradient SDS-PAGE Jeeseong Hwang, Jeffrey R. Krogmeier, Angela M. Bardo, Scott N. Goldie, Lori S. Goldner; Optical Technology Division, National Institute of Standards and Technology, Gaithersburg, MD 20899 Gary G. Giulian, Carl R. Merril; National Institute of Mental Health, National Institutes of Health, Bethesda, MD 20892 Sodium Dodecyl Sulfate Polyacrylamide Gel Electrophoresis (SDS-PAGE) is a popular method to separate proteins by their apparent molecular weight. However, it is a limited technique due, in part, to its low spatial resolution. In order to improve the resolution and to enhance the detection sensitivity of proteins separated by SDS-PAGE we are studying the detergent properties at the moving boundary of precast Tris-Tricine-Acetate cross-gradient gels using fluorescent cationic and pH indicating dyes. We have developed real-time full-field fluorescence polarization microscopy to monitor the dynamic fluorescence anisotropy from the cationic tetramethylindocarbocyanine dyes localized in the "extended stack", a concentrated detergent zone. We will present quantitative results of the fluorescence anisotropy. Our system is capable of analyzing local structures of the detergent molecules in the moving boundary of SDS-PAGE and the microenvironment(s) near the boundary. We will discuss the significance of these results and their potential role in enhanced protein separation.

  2. [Detection of hematopoietic chimera by real-time fluorescent quantitative PCR with erythrocyte Kidd blood group gene].

    PubMed

    Chen, Shu; Xu, Xian-Guo; Liu, Ying; Hong, Xiao-Zhen; Zhu, Fa-Ming; Lü, Hang-Jun; Yan, Li-Xing

    2012-06-01

    This study was aimed to establish the real-time fluorescent quantitative PCR (RT-qPCR) with erythrocyte Kidd blood group gene for detecting the hematopoietic chimera and to investigate the feasibility of this method. The TaqMan MGB probes and special primers were designed on basis of difference of erythrocyte Kidd blood group alleles, the hematopoietic chimerism was detected by RT-qPCR, the DNA chimerism was simulated by means of dilution of multiple proportions, and the sensitivity analysis was performed. The results showed that the RT-qPCR with erythrocyte Kidd blood group gene could effectively distinguish JK*A and JK*B alleles. There was no significant difference between the theoretic value and the practical measured value by this method (P > 0.05). As 156 donor's cells could be discriminated from 10(4) chimeric cells, this method may effectively detect donor's cells with correlation coefficient 0.998. It is concluded that the established RT-qPCR with erythrocyte Kidd blood group gene shows the feasibility for quantitative detection of hematopoietic chimera, and may be used to quantitatively detect chimera in a certain range.

  3. [Detection of hematopoietic chimera by real-time fluorescent quantitative PCR with erythrocyte Kidd blood group gene].

    PubMed

    Chen, Shu; Xu, Xian-Guo; Liu, Ying; Hong, Xiao-Zhen; Zhu, Fa-Ming; Lü, Hang-Jun; Yan, Li-Xing

    2012-06-01

    This study was aimed to establish the real-time fluorescent quantitative PCR (RT-qPCR) with erythrocyte Kidd blood group gene for detecting the hematopoietic chimera and to investigate the feasibility of this method. The TaqMan MGB probes and special primers were designed on basis of difference of erythrocyte Kidd blood group alleles, the hematopoietic chimerism was detected by RT-qPCR, the DNA chimerism was simulated by means of dilution of multiple proportions, and the sensitivity analysis was performed. The results showed that the RT-qPCR with erythrocyte Kidd blood group gene could effectively distinguish JK*A and JK*B alleles. There was no significant difference between the theoretic value and the practical measured value by this method (P > 0.05). As 156 donor's cells could be discriminated from 10(4) chimeric cells, this method may effectively detect donor's cells with correlation coefficient 0.998. It is concluded that the established RT-qPCR with erythrocyte Kidd blood group gene shows the feasibility for quantitative detection of hematopoietic chimera, and may be used to quantitatively detect chimera in a certain range. PMID:22739181

  4. Observation of development of breast cancer cell lines in real time by fluorescence microscopy under simulated microgravity

    NASA Astrophysics Data System (ADS)

    Lavan, David; Valdivia-Silva, Julio E.; Sanabria, Gabriela; Orihuela, Diego; Suarez, Juan; Quispe, Marco; Chuchon, Mariano; Martin, David; Maroto, Marcos; Egea, Javier

    2016-07-01

    This project consist in the implementation of a fluorescence microscope for the in real time monitoring of biological labeled samples by several fluorophores in microgravity conditions keeping the temperature, humidity, and (CO)2 controlled by an electronic platform. The system (fluorescence microscope and incubator) is integrated to a microgravity simulator machine which was presented on the "30th Annual American Society for Gravitation and Space Research Meeting" October 2014 in Pasadena, CA, USA. Currently, we have the microgravity machine biologically validated by genetic expression studies in pupal stage of Drosophila melanogaster. The fluorescence microscope has a platform designed to hold a culture flask, and a fluorescence camera (Leica DFC3000 G) connected to an optical system (Fluorescence Light source Leica EL6000, optic fiber, fiber adapter, and fluorescence filter) in order to take images in real time. The mechanical system of the fluorescence microsc ope is designed to allow the displacement of the fluorescence camera through a parallel plane to the culture flask's plane and also the movement of the platform through a perpendicular axis to the culture flask in order to focus the samples to the optical system. The mechanical system is propelled by four DC moto-reductors with encoder (A-max 26 Maxon motor, GP 32S screw and MR encoder) that generate displacements in the order of micrometers. The angular position control of the DC motoreductor's shaft of all the DC moto-reductors is done by PWM signals based on the interpretation of the signals provided by the encoders during the movement. The system is remotely operated by a graphic interface installed on a personal computer or any mobile device (smartphone, laptop or tablet) by using the internet. Acknowledgments: Grant of INNOVATE PERU (Formerly FINCYT)

  5. Depressed mood in individuals with schizophrenia: A comparison of retrospective and real-time measures.

    PubMed

    Blum, Lisa H; Vakhrusheva, Julia; Saperstein, Alice; Khan, Samira; Chang, Rachel W; Hansen, Marie C; Zemon, Vance; Kimhy, David

    2015-06-30

    Depressed mood is prevalent among individuals with schizophrenia, leading to difficulties in functioning. Typically, depressed mood is evaluated using retrospective assessments during which individuals are asked to recall their mood during the past week or month. However, as individuals with schizophrenia may display memory difficulties, the results of such assessments may be biased, potentially leading to inaccurate clinical characterizations and/or suboptimal treatment. Our aim was to assess the potential impact of long-term memory on depressed mood in individuals with schizophrenia. Employing an Experience Sampling Method (ESM) approach, 51 individuals with schizophrenia and 22 healthy controls rated their momentary emotions up to 10 times/day over a two-day period, along with retrospective measures of depressed mood, long-term memory, quality of life, social functioning, and symptoms. ESM assessment of real-time depressed mood demonstrated discriminant and convergent validity. Among the schizophrenia group, there was a significant correlation between the real-time and retrospective measures of depressed mood. However, once variance due to long-term memory was controlled, the relationship between the real-time and retrospective measure was no longer significant. The findings suggest that a real-time measure of depressed mood may allow overcoming some of the limitations associated with long-term memory difficulties common among individuals with schizophrenia.

  6. Real-time monitoring of NKCC2 endocytosis by total internal reflection fluorescence (TIRF) microscopy.

    PubMed

    Jaykumar, Ankita Bachhawat; Caceres, Paulo S; Sablaban, Ibrahim; Tannous, Bakhos A; Ortiz, Pablo A

    2016-01-15

    The apical Na-K-2Cl cotransporter (NKCC2) mediates NaCl reabsorption by the thick ascending limb (TAL). The amount of NKCC2 at the apical membrane of TAL cells is determined by exocytic delivery, recycling, and endocytosis. Surface biotinylation allows measurement of NKCC2 endocytosis, but it has low time resolution and does not allow imaging of the dynamic process of endocytosis. We hypothesized that total internal reflection fluorescence (TIRF) microscopy imaging of labeled NKCC2 would allow monitoring of NKCC2 endocytosis in polarized Madin-Darby canine kidney (MDCK) and TAL cells. Thus we generated a NKCC2 construct containing a biotin acceptor domain (BAD) sequence between the transmembrane domains 5 and 6. Once expressed in polarized MDCK or TAL cells, surface NKCC2 was specifically biotinylated by exogenous biotin ligase (BirA). We also demonstrate that expression of a secretory form of BirA in TAL cells induces metabolic biotinylation of NKCC2. Labeling biotinylated surface NKCC2 with fluorescent streptavidin showed that most apical NKCC2 was located within small discrete domains or clusters referred to as "puncta" on the TIRF field. NKCC2 puncta were observed to disappear from the TIRF field, indicating an endocytic event which led to a decrease in the number of surface puncta at a rate of 1.18 ± 0.16%/min in MDCK cells, and a rate 1.09 ± 0.08%/min in TAL cells (n = 5). Treating cells with a cholesterol-chelating agent (methyl-β-cyclodextrin) completely blocked NKCC2 endocytosis. We conclude that TIRF microscopy of labeled NKCC2 allows the dynamic imaging of individual endocytic events at the apical membrane of TAL cells.

  7. Real-time 3D measurement based on structured light illumination considering camera lens distortion

    NASA Astrophysics Data System (ADS)

    Feng, Shijie; Chen, Qian; Zuo, Chao; Sun, Jiasong; Yu, ShiLing

    2014-12-01

    Optical three-dimensional (3-D) profilometry is gaining increasing attention for its simplicity, flexibility, high accuracy, and non-contact nature. Recent advances in imaging sensors and digital projection technology further its progress in high-speed, real-time applications, enabling 3-D shapes reconstruction of moving objects and dynamic scenes. In traditional 3-D measurement system where the processing time is not a key factor, camera lens distortion correction is performed directly. However, for the time-critical high-speed applications, the time-consuming correction algorithm is inappropriate to be performed directly during the real-time process. To cope with this issue, here we present a novel high-speed real-time 3-D coordinates measuring technique based on fringe projection with the consideration of the camera lens distortion. A pixel mapping relation between a distorted image and a corrected one is pre-determined and stored in computer memory for real-time fringe correction. And a method of lookup table (LUT) is introduced as well for fast data processing. Our experimental results reveal that the measurement error of the in-plane coordinates has been reduced by one order of magnitude and the accuracy of the out-plane coordinate been tripled after the distortions being eliminated. Moreover, owing to the merit of the LUT, the 3-D reconstruction can be achieved at 92.34 frames per second.

  8. Noninvasive real-time fluorescence imaging of the lymphatic uptake of BSA-IRDye 680 conjugate administered subcutaneously in mice.

    PubMed

    Wu, Fang; Bhansali, Suraj G; Tamhane, Mitalee; Kumar, Rajiv; Vathy, Lisa A; Ding, Hong; Yong, Ken-Tye; Bergey, Earl J; Prasad, Paras N; Morris, Marilyn E

    2012-05-01

    The goal of our studies was to determine lymphatic uptake of bovine serum albumin (BSA) using real-time noninvasive fluorescence imaging. BSA labeled with near-infrared dye (IRDye) 680 was used as a model protein-dye conjugate. The conjugation of BSA with IRDye 680 was confirmed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). Size-exclusion high-performance liquid chromatography and SDS-PAGE demonstrated that the IRDye 680-labeled BSA conjugate in the lymph node (LN) homogenate samples was stable at physiological temperature (37°C) for at least 5 days. Whole-body noninvasive optical imaging of hairless SKH-1 mice was performed after subcutaneous (s.c.) injection (dose = 0.1 mg/kg) into the front footpad. Noninvasive fluorescence imaging demonstrated that BSA-IRDye 680 conjugates were dynamically taken up by the lymphatic system, accumulated in the axillary LNs and then cleared, indicating that lymphatic transport plays a role in the absorption of BSA. Ex vivo tissue imaging of LN homogenates provided confirmatory data with respect to the uptake of fluorescent-labeled BSA determined by in vivo imaging. Noninvasive real-time imaging of LNs provides a novel tool for evaluating uptake and accumulation of fluorescent-labeled proteins by the lymphatic system after s.c. injection in a mouse model.

  9. Real-time remote detection and measurement for airborne imaging spectroscopy: a case study with methane

    NASA Astrophysics Data System (ADS)

    Thompson, D. R.; Leifer, I.; Bovensmann, H.; Eastwood, M.; Fladeland, M.; Frankenberg, C.; Gerilowski, K.; Green, R. O.; Kratwurst, S.; Krings, T.; Luna, B.; Thorpe, A. K.

    2015-10-01

    Localized anthropogenic sources of atmospheric CH4 are highly uncertain and temporally variable. Airborne remote measurement is an effective method to detect and quantify these emissions. In a campaign context, the science yield can be dramatically increased by real-time retrievals that allow operators to coordinate multiple measurements of the most active areas. This can improve science outcomes for both single- and multiple-platform missions. We describe a case study of the NASA/ESA CO2 and MEthane eXperiment (COMEX) campaign in California during June and August/September 2014. COMEX was a multi-platform campaign to measure CH4 plumes released from anthropogenic sources including oil and gas infrastructure. We discuss principles for real-time spectral signature detection and measurement, and report performance on the NASA Next Generation Airborne Visible Infrared Spectrometer (AVIRIS-NG). AVIRIS-NG successfully detected CH4 plumes in real-time at Gb s-1 data rates, characterizing fugitive releases in concert with other in situ and remote instruments. The teams used these real-time CH4 detections to coordinate measurements across multiple platforms, including airborne in situ, airborne non-imaging remote sensing, and ground-based in situ instruments. To our knowledge this is the first reported use of real-time trace-gas signature detection in an airborne science campaign, and presages many future applications. Post-analysis demonstrates matched filter methods providing noise-equivalent (1σ) detection sensitivity for 1.0 % CH4 column enhancements equal to 141 ppm m.

  10. A non-invasive fluorescence-based oxygen sensor and platform for studying cell responses to metabolic agents in real-time

    NASA Astrophysics Data System (ADS)

    Buchapudi, Koutilya Reddy

    A fluorescence-based sensor in a transverse flow/stop measurement platform has been developed to determine real-time changes in oxygen consumption rates for cell metabolic studies. The oxygen sensitive fluorophore platinum octaethylporphyrin was embedded in a cellulose acetate matrix and affixed to a fiber optic bundle, which provided for transmission of the excitation and emission wavelengths of the film. The fiber optic bundle was sealed in a sensor head that can be used in standard 24-well plates common to research labs. The utility of the sensor and sensing platform were determined by measuring the changes in oxygen consumption rates of Candida albicans during 90/30 s flow/stop cycles. Exposure of these cells to metabolic antagonists and an enhancer showed the expected decrease and increase in oxygen consumption rates in real time. The applicability of the platform to biological studies is illustrated by determination of synergistic activities between antifungal drugs and fluoride exposure in Candida albicans. The robustness of the fluorophore film is demonstrated by perfusion with different media and analyte conditions in the absence of cells. For stop cycle time intervals less than 1 minute the sensor exhibited a rapid and fairly linear change in fluorescence intensity to changing oxygen concentrations in the measurement chamber. Flow cycle fluorescence intensities were used as a baseline correction for treating the stop cycle fluorescence peaks.

  11. Real-time estimation of plasma insulin concentration from continuous glucose monitor measurements.

    PubMed

    de Pereda, Diego; Romero-Vivo, Sergio; Ricarte, Beatriz; Rossetti, Paolo; Ampudia-Blasco, Francisco Javier; Bondia, Jorge

    2016-01-01

    Continuous glucose monitors can measure interstitial glucose concentration in real time for closed-loop glucose control systems, known as artificial pancreas. These control systems use an insulin feedback to maintain plasma glucose concentration within a narrow and safe range, and thus to avoid health complications. As it is not possible to measure plasma insulin concentration in real time, insulin models have been used in literature to estimate them. Nevertheless, the significant inter- and intra-patient variability of insulin absorption jeopardizes the accuracy of these estimations. In order to reduce these limitations, our objective is to perform a real-time estimation of plasma insulin concentration from continuous glucose monitoring (CGM). Hovorka's glucose-insulin model has been incorporated in an extended Kalman filter in which different selected time-variant model parameters have been considered as extended states. The observability of the original Hovorka's model and of several extended models has been evaluated by their Lie derivatives. We have evaluated this methodology with an in-silico study with 100 patients with Type 1 diabetes during 25 h. Furthermore, it has been also validated using clinical data from 12 insulin pump patients with Type 1 diabetes who underwent four mixed meal studies. Real-time insulin estimations have been compared to plasma insulin measurements to assess performance showing the validity of the methodology here used in comparison with that formerly used for insulin models. Hence, real-time estimations for plasma insulin concentration based on subcutaneous glucose monitoring can be beneficial for increasing the efficiency of control algorithms for the artificial pancreas. PMID:26343364

  12. Real-time emission factor measurements of isocyanic acid from light duty gasoline vehicles

    NASA Astrophysics Data System (ADS)

    Brady, J.; Crisp, T. A.; Collier, S.; Kuwayama, T.; Zhang, Q.; Kleeman, M.; Bertram, T. H.

    2013-12-01

    Recent work has demonstrated the potential for vehicle based anthropogenic sources of the carcinogen isocyanic acid (HNCO) in urban environments. Although emission factors for HNCO have recently been measured for light duty diesel vehicles, light duty gasoline vehicles are not well characterized. Here we will present real-time emission factor measurements of HNCO for light duty gasoline vehicles measured at the California Air Resource Board's Haagen-Smit Laboratory in September of 2011 driven on a chassis dynamometer using the California Unified Driving Cycle. Emission factors for HNCO were determined for eight light duty gasoline vehicles utilizing a fast response chemical ionization time-of-flight mass spectrometer and simultaneous real-time measurements of CO, CO2, and NOx. We will discuss the potential production mechanism for HNCO by light duty gasoline vehicles as well as the potential drive cycle dependency of HNCO production.

  13. Real-time background-free selective imaging of fluorescent nanodiamonds in vivo.

    PubMed

    Igarashi, Ryuji; Yoshinari, Yohsuke; Yokota, Hiroaki; Sugi, Takuma; Sugihara, Fuminori; Ikeda, Kazuhiro; Sumiya, Hitoshi; Tsuji, Shigenori; Mori, Ikue; Tochio, Hidehito; Harada, Yoshie; Shirakawa, Masahiro

    2012-11-14

    Recent developments of imaging techniques have enabled fluorescence microscopy to investigate the localization and dynamics of intracellular substances of interest even at the single-molecule level. However, such sensitive detection is often hampered by autofluorescence arising from endogenous molecules. Those unwanted signals are generally reduced by utilizing differences in either wavelength or fluorescence lifetime; nevertheless, extraction of the signal of interest is often insufficient, particularly for in vivo imaging. Here, we describe a potential method for the selective imaging of nitrogen-vacancy centers (NVCs) in nanodiamonds. This method is based on the property of NVCs that the fluorescence intensity sensitively depends on the ground state spin configuration which can be regulated by electron spin magnetic resonance. Because the NVC fluorescence exhibits neither photobleaching nor photoblinking, this protocol allowed us to conduct long-term tracking of a single nanodiamond in both Caenorhabditis elegans and mice, with excellent imaging contrast even in the presence of strong background autofluorescence.

  14. Digital Holography for in Situ Real-Time Measurement of Plasma-Facing-Component Erosion

    SciTech Connect

    ThomasJr., C. E.; Granstedt, E. M.; Biewer, Theodore M; Baylor, Larry R; Combs, Stephen Kirk; Meitner, Steven J; Hillis, Donald Lee; Majeski, R.; Kaita, R.

    2014-01-01

    In situ, real time measurement of net plasma-facing-component (PFC) erosion/deposition in a real plasma device is challenging due to the need for good spatial and temporal resolution, sufficient sensitivity, and immunity to fringe-jump errors. Design of a high-sensitivity, potentially high-speed, dual-wavelength CO2 laser digital holography system (nominally immune to fringe jumps) for PFC erosion measurement is discussed.

  15. Real-time locating and speed measurement of fibre fuse using optical frequency-domain reflectometry

    PubMed Central

    Jiang, Shoulin; Ma, Lin; Fan, Xinyu; Wang, Bin; He, Zuyuan

    2016-01-01

    We propose and experimentally demonstrate real-time locating and speed measurement of fibre fuse by analysing the Doppler shift of reflected light using optical frequency-domain reflectometry (OFDR). Our method can detect the start of a fibre fuse within 200 ms which is equivalent to a propagation distance of about 10 cm in standard single-mode fibre. We successfully measured instantaneous speed of propagating fibre fuses and observed their subtle fluctuation owing to the laser power instability. The resolution achieved for speed measurement in our demonstration is 1 × 10−3 m/s. We studied the fibre fuse propagation speed dependence on the launched power in different fibres. Our method is promising for both real time fibre fuse monitoring and future studies on its propagation and termination. PMID:27146550

  16. Real-time locating and speed measurement of fibre fuse using optical frequency-domain reflectometry.

    PubMed

    Jiang, Shoulin; Ma, Lin; Fan, Xinyu; Wang, Bin; He, Zuyuan

    2016-05-05

    We propose and experimentally demonstrate real-time locating and speed measurement of fibre fuse by analysing the Doppler shift of reflected light using optical frequency-domain reflectometry (OFDR). Our method can detect the start of a fibre fuse within 200 ms which is equivalent to a propagation distance of about 10 cm in standard single-mode fibre. We successfully measured instantaneous speed of propagating fibre fuses and observed their subtle fluctuation owing to the laser power instability. The resolution achieved for speed measurement in our demonstration is 1 × 10(-3) m/s. We studied the fibre fuse propagation speed dependence on the launched power in different fibres. Our method is promising for both real time fibre fuse monitoring and future studies on its propagation and termination.

  17. LANL's near-real-time measurement control bolt-on to LANMAS

    SciTech Connect

    Hicks, Ruel D; Boyle, Caroline M

    2010-01-01

    Los Alamos National Laboratory (LANL) has created a near-real-time Measurement Control Program (MCP) that integrates with Local Area Network Material Accounting System (LANMAS). The program was designed to take the place of an aging accounting system at LANL which incorporated the measurement control. LANL's Material Control and Accountability (MC&A) group developed many bolt-on features to enhance LANMAS called LAM CAS (Los Alamos Material Control and Accounting System), one of those bolt-on enhancements was to develop the MCP to replace the previous version. MCP was developed with the multiple end-user groups in mind by creating a near-real-time system that was user friendly, provided access controls, and account status of the measurement control systems.

  18. Real-time locating and speed measurement of fibre fuse using optical frequency-domain reflectometry.

    PubMed

    Jiang, Shoulin; Ma, Lin; Fan, Xinyu; Wang, Bin; He, Zuyuan

    2016-01-01

    We propose and experimentally demonstrate real-time locating and speed measurement of fibre fuse by analysing the Doppler shift of reflected light using optical frequency-domain reflectometry (OFDR). Our method can detect the start of a fibre fuse within 200 ms which is equivalent to a propagation distance of about 10 cm in standard single-mode fibre. We successfully measured instantaneous speed of propagating fibre fuses and observed their subtle fluctuation owing to the laser power instability. The resolution achieved for speed measurement in our demonstration is 1 × 10(-3) m/s. We studied the fibre fuse propagation speed dependence on the launched power in different fibres. Our method is promising for both real time fibre fuse monitoring and future studies on its propagation and termination. PMID:27146550

  19. Real-time locating and speed measurement of fibre fuse using optical frequency-domain reflectometry

    NASA Astrophysics Data System (ADS)

    Jiang, Shoulin; Ma, Lin; Fan, Xinyu; Wang, Bin; He, Zuyuan

    2016-05-01

    We propose and experimentally demonstrate real-time locating and speed measurement of fibre fuse by analysing the Doppler shift of reflected light using optical frequency-domain reflectometry (OFDR). Our method can detect the start of a fibre fuse within 200 ms which is equivalent to a propagation distance of about 10 cm in standard single-mode fibre. We successfully measured instantaneous speed of propagating fibre fuses and observed their subtle fluctuation owing to the laser power instability. The resolution achieved for speed measurement in our demonstration is 1 × 10‑3 m/s. We studied the fibre fuse propagation speed dependence on the launched power in different fibres. Our method is promising for both real time fibre fuse monitoring and future studies on its propagation and termination.

  20. Fluorescent chitosan complex nanosphere diazeniumdiolates as donors and sensitive real-time probes of nitric oxide.

    PubMed

    Tan, Lianjiang; Wan, Ajun; Li, Huili

    2013-02-21

    A new CuFL (2-{2-chloro-6-hydroxy-5-[(2-methyl-quinolin-8-ylamino)-methyl]-3-oxo-3H-xanthen-9-yl}-benzoic acid)-CS (chitosan) NS diazeniumdiolates system consisting of NO donors and highly-sensitive NO probes is reported. FL-CS NS diazeniumdiolates were synthesized by incorporating the fluorescent molecule FL with chitosan (CS) and reacting the resultant FL-CS complex with pressurized NO and dimethyl sulfate (DMS). Then the FL-CS NS diazeniumdiolates were reacted with copper chloride (CuCl(2)) to generate non-fluorescent CuFL-CS NS diazeniumdiolates. The CuFL-CS NS diazeniumdiolates have a spherical outline with a dimension of ca. 250 nm. They have high selectivity for NO over other related substances. The results of in vitro and in vivo experiments indicate that the CuFL-CS NS diazeniumdiolates can release NO under physiological conditions and meanwhile detect the released NO based on the considerable fluorescence increase of the otherwise non-fluorescent system caused by the NO. The good fluorescence stability of the NO-FL-CS NS provides prospects for the CuFL-CS NS diazeniumdiolates in biomedical applications. PMID:23223327

  1. Real-Time Inhibitor Recession Measurements in the Space Shuttle Reusable Solid Rocket Motors

    NASA Technical Reports Server (NTRS)

    McWhorter, Bruce B.; Ewing, Mark E.; McCool, Alex (Technical Monitor)

    2001-01-01

    Real-time char line recession measurements were made on propellant inhibitors of the Space Shuttle Reusable Solid Rocket Motor (RSRM). The RSRM FSM-8 static test motor propellant inhibitors (composed of a rubber insulation material) were successfully instrumented with eroding potentiometers and thermocouples. The data was used to establish inhibitor recession versus time relationships. Normally, pre-fire and post-fire insulation thickness measurements establish the thermal performance of an ablating insulation material. However, post-fire inhibitor decomposition and recession measurements are complicated by the fact that most of the inhibitor is back during motor operation. It is therefore a difficult task to evaluate the thermal protection offered by the inhibitor material. Real-time measurements would help this task. The instrumentation program for this static test motor marks the first time that real-time inhibitors. This report presents that data for the center and aft field joint forward facing inhibitors. The data was primarily used to measure char line recession of the forward face of the inhibitors which provides inhibitor thickness reduction versus time data. The data was also used to estimate the inhibitor height versus time relationship during motor operation.

  2. Real-time electron density measurements from Cotton-Mouton effect in JET machine

    SciTech Connect

    Brombin, M.; Boboc, A.; Zabeo, L.

    2008-10-15

    Real-time density profile measurements are essential for advanced fusion tokamak operation and interferometry is a proven method for this task. Nevertheless, as a consequence of edge localized modes, pellet injections, fast density increases, or disruptions, the interferometer is subject to fringe jumps, which produce loss of the signal preventing reliable use of the measured density in a real-time feedback controller. An alternative method to measure the density is polarimetry based on the Cotton-Mouton effect, which is proportional to the line-integrated electron density. A new analysis approach has been implemented and tested to verify the reliability of the Cotton-Mouton measurements for a wide range of plasma parameters and to compare the density evaluated from polarimetry with that from interferometry. The density measurements based on polarimetry are going to be integrated in the real-time control system of JET since the difference with the interferometry is within one fringe for more than 90% of the cases.

  3. Augmented microscopy: real-time overlay of bright-field and near-infrared fluorescence images.

    PubMed

    Watson, Jeffrey R; Gainer, Christian F; Martirosyan, Nikolay; Skoch, Jesse; Lemole, G Michael; Anton, Rein; Romanowski, Marek

    2015-10-01

    Intraoperative applications of near-infrared (NIR) fluorescent contrast agents can be aided by instrumentation capable of merging the view of surgical field with that of NIR fluorescence. We demonstrate augmented microscopy, an intraoperative imaging technique in which bright-field (real) and electronically processed NIR fluorescence (synthetic) images are merged within the optical path of a stereomicroscope. Under luminance of 100,000 lx, representing typical illumination of the surgical field, the augmented microscope detects 189 nM concentration of indocyanine green and produces a composite of the real and synthetic images within the eyepiece of the microscope at 20 fps. Augmentation described here can be implemented as an add-on module to visualize NIR contrast agents, laser beams, or various types of electronic data within the surgical microscopes commonly used in neurosurgical, cerebrovascular, otolaryngological, and ophthalmic procedures.

  4. Augmented microscopy: real-time overlay of bright-field and near-infrared fluorescence images

    NASA Astrophysics Data System (ADS)

    Watson, Jeffrey R.; Gainer, Christian F.; Martirosyan, Nikolay; Skoch, Jesse; Lemole, G. Michael, Jr.; Anton, Rein; Romanowski, Marek

    2015-10-01

    Intraoperative applications of near-infrared (NIR) fluorescent contrast agents can be aided by instrumentation capable of merging the view of surgical field with that of NIR fluorescence. We demonstrate augmented microscopy, an intraoperative imaging technique in which bright-field (real) and electronically processed NIR fluorescence (synthetic) images are merged within the optical path of a stereomicroscope. Under luminance of 100,000 lx, representing typical illumination of the surgical field, the augmented microscope detects 189 nM concentration of indocyanine green and produces a composite of the real and synthetic images within the eyepiece of the microscope at 20 fps. Augmentation described here can be implemented as an add-on module to visualize NIR contrast agents, laser beams, or various types of electronic data within the surgical microscopes commonly used in neurosurgical, cerebrovascular, otolaryngological, and ophthalmic procedures.

  5. Augmented microscopy: real-time overlay of bright-field and near-infrared fluorescence images

    PubMed Central

    Watson, Jeffrey R.; Gainer, Christian F.; Martirosyan, Nikolay; Skoch, Jesse; Lemole, G. Michael; Anton, Rein; Romanowski, Marek

    2015-01-01

    Abstract. Intraoperative applications of near-infrared (NIR) fluorescent contrast agents can be aided by instrumentation capable of merging the view of surgical field with that of NIR fluorescence. We demonstrate augmented microscopy, an intraoperative imaging technique in which bright-field (real) and electronically processed NIR fluorescence (synthetic) images are merged within the optical path of a stereomicroscope. Under luminance of 100,000 lx, representing typical illumination of the surgical field, the augmented microscope detects 189 nM concentration of indocyanine green and produces a composite of the real and synthetic images within the eyepiece of the microscope at 20 fps. Augmentation described here can be implemented as an add-on module to visualize NIR contrast agents, laser beams, or various types of electronic data within the surgical microscopes commonly used in neurosurgical, cerebrovascular, otolaryngological, and ophthalmic procedures. PMID:26440760

  6. 3D real-time measurement system of seam with laser

    NASA Astrophysics Data System (ADS)

    Huang, Min-shuang; Huang, Jun-fen

    2014-02-01

    3-D Real-time Measurement System of seam outline based on Moiré Projection is proposed and designed. The system is composed of LD, grating, CCD, video A/D, FPGA, DSP and an output interface. The principle and hardware makeup of high-speed and real-time image processing circuit based on a Digital Signal Processor (DSP) and a Field Programmable Gate Array (FPGA) are introduced. Noise generation mechanism in poor welding field conditions is analyzed when Moiré stripes are projected on a welding workpiece surface. Median filter is adopted to smooth the acquired original laser image of seam, and then measurement results of a 3-D outline image of weld groove are provided.

  7. Real-time SAW measurements of NVR in cleanroom and in microenvironment

    SciTech Connect

    Liang, A.Y.; McIntyre, D.C.; Lujan, R.D.; Thornberg, S.M.; Bender, S.F.A.

    1994-05-01

    Using a real-time, Surface Acoustic Wave (SAW) sensing instrument supplied by Femtometrics, we have measured organic contamination, or nonvolatile residues (NVR), in both a cleanroom and a microenvironment. To demonstrate the {open_quotes}real-time{close_quotes} NVR detectability and sensitivity of the SAW instrument, controlled contamination experiments with photoresist material were also conducted. In addition, two cleaning methods for removing contamination from used sensors have been evaluated. One technique uses the on-board temperature varying capability of the SAW instrument, while the other technique utilizes a uv-ozone cleaner for the sensor cleaning. Preliminary results from SAW measurements in the cleanroom and in a microenvironment and tests to evaluate sensor cleaning techniques are presented in this report. A concluding summary with an assessment of the current SAW instrument and potential future applications for this technology is also presented.

  8. Real-time transverse force sensing using fiber Bragg grating through direct Stokes parameters measurement.

    PubMed

    Su, Yang; Zhu, Yong; Zhang, Baofu; Zhou, Hua

    2015-12-14

    Characteristics of a fiber Bragg grating (FBG) transverse force sensor based on Stokes parameters are presented. Real-time force measurement is achieved through direct measurement of the Stokes parameters at single wavelength. A proportional relationship and linear fit are found between Stokes parameters and applied force. The sensitivity and dynamic range dependence on the state of polarization (SOP) of the incident light is investigated theoretically and experimentally. A maximum sensitivity of 0.037/N is experimentally achieved and it can be improved further by adjusting the incident SOP. This design significantly reduces system complexity and improves data processing speed, which has great practical value in real-time FBG sensing applications. PMID:26699020

  9. The detection of T-Nos, a genetic element present in GMOs, by cross-priming isothermal amplification with real-time fluorescence.

    PubMed

    Zhang, Fang; Wang, Liu; Fan, Kai; Wu, Jian; Ying, Yibin

    2014-05-01

    An isothermal cross-priming amplification (CPA) assay for Agrobacterium tumefaciens nopaline synthase terminator (T-Nos) was established and investigated in this work. A set of six specific primers, recognizing eight distinct regions on the T-Nos sequence, was designed. The CPA assay was performed at a constant temperature, 63 °C, and detected by real-time fluorescence. The results indicated that real-time fluorescent CPA had high specificity, and the limit of detection was 1.06 × 10(3) copies of rice genomic DNA, which could be detected in 40 min. Comparison of real-time fluorescent CPA and conventional polymerase chain reaction (PCR) was also performed. Results revealed that real-time fluorescent CPA had a comparable sensitivity to conventional real-time PCR and had taken a shorter time. In addition, different contents of genetically modified (GM)-contaminated rice seed powder samples were detected for practical application. The result showed real-time fluorescent CPA could detect 0.5 % GM-contaminated samples at least, and the whole reaction could be finished in 35 min. Real-time fluorescent CPA is sensitive enough to monitor labeling systems and provides an attractive method for the detection of GMO. PMID:24748469

  10. The detection of T-Nos, a genetic element present in GMOs, by cross-priming isothermal amplification with real-time fluorescence.

    PubMed

    Zhang, Fang; Wang, Liu; Fan, Kai; Wu, Jian; Ying, Yibin

    2014-05-01

    An isothermal cross-priming amplification (CPA) assay for Agrobacterium tumefaciens nopaline synthase terminator (T-Nos) was established and investigated in this work. A set of six specific primers, recognizing eight distinct regions on the T-Nos sequence, was designed. The CPA assay was performed at a constant temperature, 63 °C, and detected by real-time fluorescence. The results indicated that real-time fluorescent CPA had high specificity, and the limit of detection was 1.06 × 10(3) copies of rice genomic DNA, which could be detected in 40 min. Comparison of real-time fluorescent CPA and conventional polymerase chain reaction (PCR) was also performed. Results revealed that real-time fluorescent CPA had a comparable sensitivity to conventional real-time PCR and had taken a shorter time. In addition, different contents of genetically modified (GM)-contaminated rice seed powder samples were detected for practical application. The result showed real-time fluorescent CPA could detect 0.5 % GM-contaminated samples at least, and the whole reaction could be finished in 35 min. Real-time fluorescent CPA is sensitive enough to monitor labeling systems and provides an attractive method for the detection of GMO.

  11. Real-time vision-based traffic flow measurements and incident detection

    NASA Astrophysics Data System (ADS)

    Fishbain, Barak; Ideses, Ianir; Mahalel, David; Yaroslavsky, Leonid

    2009-02-01

    Visual surveillance for traffic systems requires short processing time, low processing cost and high reliability. Under those requirements, image processing technologies offer a variety of systems and methods for Intelligence Transportation Systems (ITS) as a platform for traffic Automatic Incident Detection (AID). There exist two classes of AID methods mainly studied: one is based on inductive loops, radars, infrared sonar and microwave detectors and the other is based on video images. The first class of methods suffers from drawbacks in that they are expensive to install and maintain and they are unable to detect slow or stationary vehicles. Video sensors, on the other hand, offer a relatively low installation cost with little traffic disruption during maintenance. Furthermore, they provide wide area monitoring allowing analysis of traffic flows and turning movements, speed measurement, multiple-point vehicle counts, vehicle classification and highway state assessment, based on precise scene motion analysis. This paper suggests the utilization of traffic models for real-time vision-based traffic analysis and automatic incident detection. First, the traffic flow variables, are introduced. Then, it is described how those variables can be measured from traffic video streams in real-time. Having the traffic variables measured, a robust automatic incident detection scheme is suggested. The results presented here, show a great potential for integration of traffic flow models into video based intelligent transportation systems. The system real time performance is achieved by utilizing multi-core technology using standard parallelization algorithms and libraries (OpenMP, IPP).

  12. Real-time full bandwidth measurement of spectral noise in supercontinuum generation

    PubMed Central

    Wetzel, B.; Stefani, A.; Larger, L.; Lacourt, P. A.; Merolla, J. M.; Sylvestre, T.; Kudlinski, A.; Mussot, A.; Genty, G.; Dias, F.; Dudley, J. M.

    2012-01-01

    The ability to measure real-time fluctuations of ultrashort pulses propagating in optical fiber has provided significant insights into fundamental dynamical effects such as modulation instability and the formation of frequency-shifting rogue wave solitons. We report here a detailed study of real-time fluctuations across the full bandwidth of a fiber supercontinuum which directly reveals the significant variation in measured noise statistics across the spectrum, and which allows us to study correlations between widely separated spectral components. For two different propagation distances corresponding to the onset phase of spectral broadening and the fully-developed supercontinuum, we measure real time noise across the supercontinuum bandwidth, and we quantify the supercontinuum noise using statistical higher-order moments and a frequency-dependent intensity correlation map. We identify correlated spectral regions within the supercontinuum associated with simultaneous sideband generation, as well as signatures of pump depletion and soliton-like pump dynamics. Experimental results are in excellent agreement with simulations. PMID:23193436

  13. Real-time measurement of dust in the workplace using video exposure monitoring: Farming to pharmaceuticals

    NASA Astrophysics Data System (ADS)

    Walsh, P. T.; Forth, A. R.; Clark, R. D. R.; Dowker, K. P.; Thorpe, A.

    2009-02-01

    Real-time, photometric, portable dust monitors have been employed for video exposure monitoring (VEM) to measure and highlight dust levels generated by work activities, illustrate dust control techniques, and demonstrate good practice. Two workplaces, presenting different challenges for measurement, were used to illustrate the capabilities of VEM: (a) poultry farming activities and (b) powder transfer operations in a pharmaceutical company. For the poultry farm work, the real-time monitors were calibrated with respect to the respirable and inhalable dust concentrations using cyclone and IOM reference samplers respectively. Different rankings of exposure for typical activities were found on the small farm studied here compared to previous exposure measurements at larger poultry farms: these were mainly attributed to the different scales of operation. Large variations in the ratios of respirable, inhalable and real-time monitor TWA concentrations of poultry farm dust for various activities were found. This has implications for the calibration of light-scattering dust monitors with respect to inhalable dust concentration. In the pharmaceutical application, the effectiveness of a curtain barrier for dust control when dispensing powder in a downflow booth was rapidly demonstrated.

  14. Real-time analysis and selection of methylated DNA by fluorescence-activated single molecule sorting in a nanofluidic channel.

    PubMed

    Cipriany, Benjamin R; Murphy, Patrick J; Hagarman, James A; Cerf, Aline; Latulippe, David; Levy, Stephen L; Benítez, Jaime J; Tan, Christine P; Topolancik, Juraj; Soloway, Paul D; Craighead, Harold G

    2012-05-29

    Epigenetic modifications, such as DNA and histone methylation, are responsible for regulatory pathways that affect disease. Current epigenetic analyses use bisulfite conversion to identify DNA methylation and chromatin immunoprecipitation to collect molecules bearing a specific histone modification. In this work, we present a proof-of-principle demonstration for a new method using a nanofluidic device that combines real-time detection and automated sorting of individual molecules based on their epigenetic state. This device evaluates the fluorescence from labeled epigenetic modifications to actuate sorting. This technology has demonstrated up to 98% accuracy in molecule sorting and has achieved postsorting sample recovery on femtogram quantities of genetic material. We have applied it to sort methylated DNA molecules using simultaneous, multicolor fluorescence to identify methyl binding domain protein-1 (MBD1) bound to full-duplex DNA. The functionality enabled by this nanofluidic platform now provides a workflow for color-multiplexed detection, sorting, and recovery of single molecules toward subsequent DNA sequencing.

  15. Real-time thermal imaging of microwave accelerated metal-enhanced fluorescence (MAMEF) based assays on sapphire plates.

    PubMed

    Previte, Michael J R; Zhang, Yongxia; Aslan, Kadir; Geddes, Chris D

    2007-11-01

    In this paper, we describe an optical geometry that facilitates our further characterization of the temperature changes above silver island films (SiFs) on sapphire plates, when exposed to microwave radiation. Since sapphire transmits IR, we designed an optical scheme to capture real-time temperature images of a thin water film on sapphire plates with and without SiFs during the application of a short microwave pulse. Using this optical scheme, we can accurately determine the temperature profile of solvents in proximity to metal structures when exposed to microwave irradiation. We believe that this optical scheme will provide us with a basis for further studies in designing metal structures to further improve plasmonic-fluorescence clinical sensing applications, such as those used in microwave accelerated metal-enhanced fluorescence (MAMEF). PMID:17902038

  16. Real-Time Characterization of Virulence Factor Expression in Yersinia pestis Using a Green Fluorescent Protein Reporter System

    SciTech Connect

    Forde, C; Rocco, J; Fitch, J P; McCutchen-Maloney, S

    2004-06-09

    A real-time reporter system was developed to monitor the thermal induction of virulence factors in Yersinia pestis. The reporter system consists of a plasmid in Y. pestis in which the expression of green fluorescent protein (GFP) is under the control of the promoters for six virulence factors, yopE, sycE, yopK, yopT, yscN, and lcrE/yopN, which are all components of the Type III secretion virulence mechanism of Y. pestis. Induction of the expression of these genes in vivo was determined by the increase in fluorescence intensity of GFP in real time. Basal expression levels observed for the Y. pestis promoters, expressed as percentages of the positive control with GFP under the control of the lac promoter, were: yopE (15%), sycE (15%), yopK (13%), yopT (4%), lcrE (3.3%) and yscN (0.8%). The yopE reporter showed the strongest gene induction following temperature transition from 26 C to 37 C. The induction levels of the other virulence factors, expressed as percentages of yopE induction, were: yopK (57%), sycE (9%), yscN (3%), lcrE (3%), and yopT (2%). The thermal induction of each of these promoter fusions was repressed by calcium, and the ratios of the initial rates of thermal induction without calcium supplementation compared to the rate with calcium supplementation were: yopE (11 fold), yscN (7 fold), yopK (6 fold), lcrE (3 fold), yopT (2 fold), and sycE (2 fold). This work demonstrates a novel approach to quantify gene induction and provides a method to rapidly determine the effects of external stimuli on expression of Y. pestis virulence factors in real time, in living cells.

  17. Real-Time Aerodynamic Parameter Estimation without Air Flow Angle Measurements

    NASA Technical Reports Server (NTRS)

    Morelli, Eugene A.

    2010-01-01

    A technique for estimating aerodynamic parameters in real time from flight data without air flow angle measurements is described and demonstrated. The method is applied to simulated F-16 data, and to flight data from a subscale jet transport aircraft. Modeling results obtained with the new approach using flight data without air flow angle measurements were compared to modeling results computed conventionally using flight data that included air flow angle measurements. Comparisons demonstrated that the new technique can provide accurate aerodynamic modeling results without air flow angle measurements, which are often difficult and expensive to obtain. Implications for efficient flight testing and flight safety are discussed.

  18. Estimation of Candida albicans ABC Transporter Behavior in Real-Time via Fluorescence.

    PubMed

    Szczepaniak, Joanna; Łukaszewicz, Marcin; Krasowska, Anna

    2015-01-01

    We present a fluorometric method for determining ABC transporter activity in the pathogenic fungus C. albicans during different growth phases and in response to glucose. The carbocyanine dye diS-C3(3) was previously used to monitor plasma membrane potentials and test the influence of surface-active compounds in membrane polarization. We used diS-C3(3) to show changes in fluorescence kinetics that reflect changes in the activity of ABC transporters in C. albicans growth. Cdr1-GFP fluorescence, revealed that Cdr1p relocates to the inside of the cell after the early-log growth phase. Addition of glucose to the cell suspension resulted in Cdr1p transporter expression in the CDR2-knockout strain. We confirmed the diS-C3(3) results by standard RT-PCR and Western blotting.

  19. Fluorescent microscope system to monitor real-time interactions between focused ultrasound, echogenic drug delivery vehicles, and live cell membranes.

    PubMed

    Ibsen, Stuart; Benchimol, Michael; Esener, Sadik

    2013-01-01

    Rapid development in the field of ultrasound triggered drug delivery has made it essential to study the real-time interaction between the membranes of live cells and the membranes of echogenic delivery vehicles under exposure to focused ultrasound. The objective of this work was to design an analysis system that combined fluorescent imagining, high speed videography, and definable pulse sequences of focused ultrasound to allow for real time observations of both cell and vehicle membranes. Documenting the behavior of the membranes themselves has not previously been possible due to limitations with existing optical systems used to understand the basic physics of microbubble/ultrasound interaction and the basic interaction between microbubbles and cells. The performance of this new system to monitor membrane behavior was demonstrated by documenting the modes of vehicle fragmentation at different ultrasound intensity levels. At 1.5MPa the membranes were shown to completely fragment while at intensities below 1MPa the membranes pop open and slowly unfold. The interaction between these vehicles and cell membranes was also documented by the removal of fluorescent particles from the surfaces of live cells out to 20μm from the microbubble location. The fluid flow created by microstreaming around ensonated microbubbles was documented at video recording speeds from 60 to 18,000 frames per second. This information about membrane behavior allows the chemical and physical properties of the drug delivery vehicle to be designed along with the ultrasound pulse sequence to cause the most efficient drug delivery.

  20. Development of a Capacitive Ice Sensor to Measure Ice Growth in Real Time

    PubMed Central

    Zhi, Xiang; Cho, Hyo Chang; Wang, Bo; Ahn, Cheol Hee; Moon, Hyeong Soon; Go, Jeung Sang

    2015-01-01

    This paper presents the development of the capacitive sensor to measure the growth of ice on a fuel pipe surface in real time. The ice sensor consists of pairs of electrodes to detect the change in capacitance and a thermocouple temperature sensor to examine the ice formation situation. In addition, an environmental chamber was specially designed to control the humidity and temperature to simulate the ice formation conditions. From the humidity, a water film is formed on the ice sensor, which results in an increase in capacitance. Ice nucleation occurs, followed by the rapid formation of frost ice that decreases the capacitance suddenly. The capacitance is saturated. The developed ice sensor explains the ice growth providing information about the icing temperature in real time. PMID:25808770

  1. Real-time data acquisition and control system for the measurement of motor and neural data

    PubMed Central

    Bryant, Christopher L.; Gandhi, Neeraj J.

    2013-01-01

    This paper outlines a powerful, yet flexible real-time data acquisition and control system for use in the triggering and measurement of both analog and digital events. Built using the LabVIEW development architecture (version 7.1) and freely available, this system provides precisely timed auditory and visual stimuli to a subject while recording analog data and timestamps of neural activity retrieved from a window discriminator. The system utilizes the most recent real-time (RT) technology in order to provide not only a guaranteed data acquisition rate of 1 kHz, but a much more difficult to achieve guaranteed system response time of 1 ms. The system interface is windows-based and easy to use, providing a host of configurable options for end-user customization. PMID:15698659

  2. A digital approach for real time high-rate high-resolution radiation measurements

    NASA Astrophysics Data System (ADS)

    Gerardi, G.; Abbene, L.

    2014-12-01

    Modern spectrometers are currently developed by using digital pulse processing (DPP) systems, showing several advantages over traditional analog electronics. The aim of this work is to present digital strategies, in a time domain, for the development of real time high-rate high-resolution spectrometers. We propose a digital method, based on the single delay line (SDL) shaping technique, able to perform multi-parameter analysis with high performance even at high photon counting rates. A robust pulse shape and height analysis (PSHA), applied on single isolated time windows of the detector output waveforms, is presented. The potentialities of the proposed strategy are highlighted through both theoretical and experimental approaches. To strengthen our approach, the implementation of the method on a real-time system together with some experimental results are presented. X-ray spectra measurements with a semiconductor detector are performed both at low and high photon counting rates (up to 1.1 Mcps).

  3. Real-Time Stability Margin Measurements for X-38 Robustness Analysis

    NASA Technical Reports Server (NTRS)

    Bosworth, John T.; Stachowiak, Susan J.

    2005-01-01

    A method has been developed for real-time stability margin measurement calculations. The method relies on a tailored-forced excitation targeted to a specific frequency range. Computation of the frequency response is matched to the specific frequencies contained in the excitation. A recursive Fourier transformation is used to make the method compatible with real-time calculation. The method was incorporated into the X-38 nonlinear simulation and applied to an X-38 robustness test. X-38 stability margins were calculated for different variations in aerodynamic and mass properties over the vehicle flight trajectory. The new method showed results comparable to more traditional stability analysis techniques, and at the same time, this new method provided coverage that is more complete and increased efficiency.

  4. Development of a capacitive ice sensor to measure ice growth in real time.

    PubMed

    Zhi, Xiang; Cho, Hyo Chang; Wang, Bo; Ahn, Cheol Hee; Moon, Hyeong Soon; Go, Jeung Sang

    2015-01-01

    This paper presents the development of the capacitive sensor to measure the growth of ice on a fuel pipe surface in real time. The ice sensor consists of pairs of electrodes to detect the change in capacitance and a thermocouple temperature sensor to examine the ice formation situation. In addition, an environmental chamber was specially designed to control the humidity and temperature to simulate the ice formation conditions. From the humidity, a water film is formed on the ice sensor, which results in an increase in capacitance. Ice nucleation occurs, followed by the rapid formation of frost ice that decreases the capacitance suddenly. The capacitance is saturated. The developed ice sensor explains the ice growth providing information about the icing temperature in real time. PMID:25808770

  5. Dynamical theory of spin noise and relaxation: Prospects for real-time NMR measurements.

    PubMed

    Field, Timothy R

    2014-11-01

    Recent developments in theoretical aspects of spin noise and relaxation and their interrelationship reveal a modified spin density, distinct from the density matrix, as the necessary object to describe fluctuations in spin systems. These fluctuations are to be viewed as an intrinsic quantum mechanical property of such systems immersed in random magnetic environments and are observed as "spin noise" in the absence of any radio frequency excitation. With the prospect of ultrafast digitization, the role of spin noise in real-time parameter extraction for (NMR) spin systems, and the advantage over standard techniques, is of essential importance, especially for systems containing a small number of spins. In this article we outline prospects for harnessing the recent dynamical theory in terms of spin-noise measurement, with attention to real-time properties.

  6. Real-Time Unsteady Loads Measurements Using Hot-Film Sensors

    NASA Technical Reports Server (NTRS)

    Mangalam, Arun S.; Moes, Timothy R.

    2004-01-01

    Several flight-critical aerodynamic problems such as buffet, flutter, stall, and wing rock are strongly affected or caused by abrupt changes in unsteady aerodynamic loads and moments. Advanced sensing and flow diagnostic techniques have made possible simultaneous identification and tracking, in real-time, of the critical surface, viscosity-related aerodynamic phenomena under both steady and unsteady flight conditions. The wind tunnel study reported here correlates surface hot-film measurements of leading edge stagnation point and separation point, with unsteady aerodynamic loads on a NACA 0015 airfoil. Lift predicted from the correlation model matches lift obtained from pressure sensors for an airfoil undergoing harmonic pitchup and pitchdown motions. An analytical model was developed that demonstrates expected stall trends for pitchup and pitchdown motions. This report demonstrates an ability to obtain unsteady aerodynamic loads in real-time, which could lead to advances in air vehicle safety, performance, ride-quality, control, and health management.

  7. The Potential Applications of Real-Time Monitoring of Water Quality in a Large Shallow Lake (Lake Taihu, China) Using a Chromophoric Dissolved Organic Matter Fluorescence Sensor

    PubMed Central

    Niu, Cheng; Zhang, Yunlin; Zhou, Yongqiang; Shi, Kun; Liu, Xiaohan; Qin, Boqiang

    2014-01-01

    This study presents results from field surveys performed over various seasons in a large, eutrophic, shallow lake (Lake Taihu, China) using an in situ chromophoric dissolved organic matter (CDOM) fluorescence sensor as a surrogate for other water quality parameters. These measurements identified highly significant empirical relationships between CDOM concentration measured using the in situ fluorescence sensor and CDOM absorption, fluorescence, dissolved organic carbon (DOC), chemical oxygen demand (COD) and total phosphorus (TP) concentrations. CDOM concentration expressed in quinine sulfate equivalent units, was highly correlated with the CDOM absorption coefficient (r2 = 0.80, p < 0.001), fluorescence intensities (Ex./Em. 370/460 nm) (r2 = 0.91, p < 0.001), the fluorescence index (r2 = 0.88, p < 0.001) and the humification index (r2 = 0.78, p < 0.001), suggesting that CDOM concentration measured using the in situ fluorescence sensor could act as a substitute for the CDOM absorption coefficient and fluorescence measured in the laboratory. Similarly, CDOM concentration was highly correlated with DOC concentration (r2 = 0.68, p < 0.001), indicating that in situ CDOM fluorescence sensor measurements could be a proxy for DOC concentration. In addition, significant positive correlations were found between laboratory CDOM absorption coefficients and COD (r2 = 0.83, p < 0.001), TP (r2 = 0.82, p < 0.001) concentrations, suggesting a potential further application for the real-time monitoring of water quality using an in situ CDOM fluorescence sensor. PMID:24984060

  8. Real-time single-shot measurement and correction of pulse phase and amplitude for ultrafast lasers

    NASA Astrophysics Data System (ADS)

    Pestov, Dmitry; Ryabtsev, Anton; Rasskazov, Gennady; Lozovoy, Vadim V.; Dantus, Marcos

    2014-05-01

    The transition of femtosecond lasers from the laboratory to commercial applications requires real-time automated pulse compression, ensuring optimum performance without assistance. Single-shot phase measurements together with closed-loop optimization based on real-time multiphoton intrapulse interference phase scan are demonstrated. On-the-fly correction of amplitude, as well as second- and third-order phase distortions based on the real-time measurements, is accomplished by a pulse shaper.

  9. Modular instrumentation system for real-time measurements and control on reciprocating engines

    NASA Technical Reports Server (NTRS)

    Rice, W. J.; Birchenough, A. G.

    1980-01-01

    An instrumentation system was developed for reciprocating engines. Among the parameters measured are the indicated mean effective pressure, or theoretical work per cycle, and the mass fraction burn rate, a measure of the combustion rate in the cylinder. These computations are performed from measured cylinder pressure and crankshaft angle and are available in real time for the experimenter. A 100 or 200 consecutive-cycle sample is analyzed to reduce the effect of cyclic variations in the engine. Data are displayed in bargraph form, and the mean and standard deviation are computed. Other instruments are also described.

  10. Measurement of bow tie profiles in CT scanners using a real-time dosimeter

    SciTech Connect

    Whiting, Bruce R.; Evans, Joshua D.; Williamson, Jeffrey F.; Dohatcu, Andreea C.; Politte, David G.

    2014-10-15

    Purpose: Several areas of computed tomography (CT) research require knowledge about the intensity profile of the x-ray fan beam that is introduced by a bow tie filter. This information is considered proprietary by CT manufacturers, so noninvasive measurement methods are required. One method using real-time dosimeters has been proposed in the literature. A commercially available dosimeter was used to apply that method, and analysis techniques were developed to extract fan beam profiles from measurements. Methods: A real-time ion chamber was placed near the periphery of an empty CT gantry and the dose rate versus time waveform was recorded as the x-ray source rotated about the isocenter. In contrast to previously proposed analysis methods that assumed a pointlike detector, the finite-size ion chamber received varying amounts of coverage by the collimated x-ray beam during rotation, precluding a simple relationship between the source intensity as a function of fan beam angle and measured intensity. A two-parameter model for measurement intensity was developed that included both effective collimation width and source-to-detector distance, which then was iteratively solved to minimize the error between duplicate measurements at corresponding fan beam angles, allowing determination of the fan beam profile from measured dose-rate waveforms. Measurements were performed on five different scanner systems while varying parameters such as collimation, kVp, and bow tie filters. On one system, direct measurements of the bow tie profile were collected for comparison with the real-time dosimeter technique. Results: The data analysis method for a finite-size detector was found to produce a fan beam profile estimate with a relative error between duplicate measurement intensities of <5%. It was robust over a wide range of collimation widths (e.g., 1–40 mm), producing fan beam profiles that agreed with a relative error of 1%–5%. Comparison with a direct measurement technique on

  11. Fluorescently labeled adrenomedullin allows real-time monitoring of adrenomedullin receptor trafficking in living cells.

    PubMed

    Schönauer, Ria; Kaiser, Anette; Holze, Cathleen; Babilon, Stefanie; Köbberling, Johannes; Riedl, Bernd; Beck-Sickinger, Annette G

    2015-12-01

    The human adrenomedullin (ADM) is a 52 amino acid peptide hormone belonging to the calcitonin family of peptides, which plays a major role in the development and regulation of cardiovascular and lymphatic systems. For potential use in clinical applications, we aimed to investigate the fate of the peptide ligand after binding and activation of the adrenomedullin receptor (AM1), a heterodimer consisting of the calcitonin receptor-like receptor (CLR), a G protein-coupled receptor, associated with the receptor activity-modifying protein 2 (RAMP2). Full length and N-terminally shortened ADM peptides were synthesized using Fmoc/tBu solid phase peptide synthesis and site-specifically labeled with the fluorophore carboxytetramethylrhodamine (Tam) either by amide bond formation or copper(I)-catalyzed azide alkyne cycloaddition. For the first time, Tam-labeled ligands allowed the observation of co-internalization of the whole ligand-receptor complex in living cells co-transfected with fluorescent fusion proteins of CLR and RAMP2. Application of a fluorescent probe to track lysosomal compartments revealed that ADM together with the CLR/RAMP2-complex is routed to the degradative pathway. Moreover, we found that the N-terminus of ADM is not a crucial component of the peptide sequence in terms of AM1 internalization behavior. PMID:26767744

  12. A real-time fluorescent assay for the detection of alkaline phosphatase activity based on carbon quantum dots.

    PubMed

    Qian, Zhao Sheng; Chai, Lu Jing; Huang, Yuan Yuan; Tang, Cong; Shen, Jia Jia; Chen, Jian Rong; Feng, Hui

    2015-06-15

    A convenient and real-time fluorometric assay with the assistance of copper ions based on aggregation and disaggregation of carbon quantum dots (CQDs) was developed to achieve highly sensitive detection of alkaline phosphatase activity. CQDs and pyrophosphate anions (PPi) were used as the fluorescent indicator and substrate for ALP activity assessment respectively. Richness of carboxyl groups on the surface of CQDs enables their severe aggregation triggered by copper ions, which results in effective fluorescence quenching. Under the catalytic hydrolysis of ALP, PPi can be rapidly transformed to phosphate ions. Stronger affinity of phosphate ions to copper ions than carboxyl groups is taken advantage of to achieve fluorescence recovery induced by re-dispersion of CQDs in the presence of ALP and PPi. Quantitative evaluation of ALP activity in a broad range from 16.7 to 782.6 U/L with the detection limit of 1.1 U/L can be realized in this way, which endows the assay with high enough sensitivity for practical detection in human serum. This strategy broadens the sensing application of fluorescent CQDs with excellent biocompatibility, and provides an example based on disaggregation in optical probe development.

  13. Fluorescence Spectroscopy Approaches for the Development of a Real-Time Organophosphate Detection System Using an Enzymatic Sensor

    PubMed Central

    Carullo, Paola; Cetrangolo, Giovanni Paolo; Mandrich, Luigi; Manco, Giuseppe; Febbraio, Ferdinando

    2015-01-01

    Organophosphates are organic substances that contain a phosphoryl or a thiophosphoryl bond. They are mainly used around the world as pesticides, but can also be used as chemical warfare agents. Their detection is normally entrusted to techniques like GC- and LC-MS that, although sensitive, do not allow their identification on site and in real time. We have approached their identification by exploiting the high-affinity binding of these compounds with the esterase 2 from Alicyclobacillus acidocaldarius. Using an in silico analysis to evaluate the binding affinities of the enzyme with organophosphate inhibitors, like paraoxon, and other organophosphate compounds, like parathion, chlorpyriphos, and other organophosphate thio-derivatives, we have designed fluorescence spectroscopy experiments to study the quenching of the tryptophan residues after esterase 2 binding with the organophosphate pesticides. The changes in the fluorescence signals permitted an immediate and quantitative identification of these compounds from nano- to picomolar concentrations. A fluorescence based polarity-sensitive probe (ANS) was also employed as a means to understand the extent of the interactions involved, as well as to explore other ways to detect organophosphate pesticides. Finally, we designed a framework for the development of a biosensor that exploits fluorescence technology in combination with a sensitive and very stable bio-receptor. PMID:25671511

  14. Real-time power measurement and control for high power diode laser

    NASA Astrophysics Data System (ADS)

    Qin, Wen-bin; Liu, You-qiang; Cao, Yin-hua; Wang, Zhi-yong

    2011-06-01

    As the continual improvement of technology and beam quality, diode laser, with poor beam quality, no longer just apply to pump solid-state laser. As a kind of implement of laser materials processing, high-power diode laser has been used in manufacture, as a brand new means of laser processing. Due to the influence of inevitable unstable factors, for example, the temperature of water-cooler, the current of power supply, etc, the output power of diode laser will be unstable. And laser output power, as an important parameter, frequently affects the performance of the laser beam and the experimental results of processing, especially in the laser materials processing. Therefore, researching the real-time power measurement and control of high power diode laser has great significance, and for diode laser, it would improve performance of itself. To achieve the purpose of real-time detection, traditional measuring method, placing a power sensor behind the total-reflection mirror of laser resonant cavity, is mainly applied in the system of gas laser and solid-state laser. However, Owing to the high integration level of diode laser, traditional measuring method can't be adopted. A technique for real-time measure output power of high power diode laser is developed to improve quality of the laser in this paper. A lens placed at an angle of 45° in the system was used to sample output light of laser, and a piece of ground glass was used to uniform the beam power density, then the photoelectric detector received an optic signal and converted it into electric signal. This feeble signal was processed by amplification circuit with a filter. Finally, this detected electric signal was applied to accomplish the closed-loop control of power. The performance of power measurement and control system was tested with the 300W diode laser, and the measuring inaccuracy achieved was less than +/-1%.

  15. Environmental Measurement-While-Drilling System for Real-Time Field Screening of Contaminants

    SciTech Connect

    Bishop, L.B.; Lockwood, G.J.; Normann, R.A.; Selph, M.M.; Williams, C.V.

    1999-02-22

    Sampling during environmental drilling is essential to fully characterize the spatial distribution and migration of near surface contaminants. However, analysis of the samples is expensive and time-consuming: off-site laboratory analysis can take weeks or months. An alternative screening technology, Environmental Measurement-While-Drilling (EMWD), could save money and valuable time by quickly distinguishing between contaminated and uncontaminated areas. Real time measurements provided by an EMWD system enable on-the-spot decisions to be made regarding sampling strategies. The system also enhances worker safety and provides the added flexibility of being able to steer a drill bit in or out of hazardous zones.

  16. Real-time high-resolution measurement of collagen alignment in dynamically loaded soft tissue.

    PubMed

    York, Timothy; Kahan, Lindsey; Lake, Spencer P; Gruev, Viktor

    2014-06-01

    A technique for creating maps of the direction and strength of fiber alignment in collagenous soft tissues is presented. The method uses a division of focal plane polarimeter to measure circularly polarized light transmitted through the tissue. The architecture of the sensor allows measurement of the retardance and fiber alignment at the full frame rate of the sensor without any moving optics. The technique compares favorably to the standard method of using a rotating polarizer. How the new technique enables real-time capture of the full angular spread of fiber alignment and retardance under various cyclic loading conditions is illustrated. PMID:24972359

  17. Development of tools for real-time betatron tune measurements at the Nuclotron

    NASA Astrophysics Data System (ADS)

    Gorbachev, E. V.; Kirichenko, A. E.; Monakhov, D. V.; Romanov, S. V.; Volkov, V. I.

    2016-09-01

    A betatron tune measurement system was developed and tested at the Nuclotron. A white noise and chirp signals were used for transverse beam motion excitation. A custom FlexRIO digitizer module was developed which provides excitation signal generation for kicker electrodes and real-time signal acquisition from pickup electrodes. A high resolution FFT algorithm was implemented inside a NI PXI FPGA module, connected to digitizer. The measurement system is integrated with the NICA control system based on the TANGO Controls. Results and tests performed with the Nuclotron beam are presented.

  18. Real-time measurement of skin erythema variation by negative compression: pilot study

    NASA Astrophysics Data System (ADS)

    Jung, Byungjo; Kim, Soobyeong; Bae, Yunjin; Kang, Heesung; Lee, Yongheum; Nelson, J. Stuart

    2012-08-01

    Skin erythema has been widely used as a diagnostic parameter in dermatology. This study describes a methodology for real-time measurement of skin erythema variation induced by negative compression. This study developed an optical measurement probe, which includes a RGB color sensor that translates in the vertical direction, with the magnitude of vertical translation dependening on the amount of skin deformation. Real-time measurement of erythema variation as a function of both negative compression and time was performed in vivo on 10 measurement sites located on the back of each of 12 volunteers who participated in this study. Negative compression was sequentially applied from -30 to -80 kPa and continuously at a constant magnitude (-80 kPa) condition. The results showed that skin erythema was uniformly induced at the measurement sites and linearly increased as a function of both negative compression and time. A wide range of individual variation was noted for skin erythema, which may be due to variations in anisotropic skin properties between volunteers. This study demonstrated the clinical feasibility of a novel optical device for skin erythema measurement. Future studies are needed to investigate the clinical applications of this device.

  19. Real-time imaging of dynamic translocation of fluorescent proteins at synapses in living neurons.

    NASA Astrophysics Data System (ADS)

    De Koninck, Paul

    2003-02-01

    To understand the biology of living cells, such as the neurons in our brain, we focus on the molecular signaling interactions that proteins perform intracellularly. We have been studying the behavior of an enzyme, termed 'CaMKII', inside living neurons maintained in tissue culture. This enzyme plays a critical role in the control of synaptic transmission. Such role may involve the dynamic translocation of the enzyme at synaptic sites upon specific stimuli. To study this translocation, we use a cellular imaging technique that allows us to monitor the movement and targeting of CaMKII tagged by genetic engineering with a green fluorescent protein (GFP). We find that the enzyme translocates within seconds to synapses upon synaptic activation by neurotransmitter application. Our approach has lead to several key findings on the regulation of CaMKII translocation to the synapse and on its potential role in synaptic plasticity. However, several new advances in photonics and image analysis, which we will implement in our laboratory, will greatly help pushing the limits of our resolution of such type molecular event in living cells.

  20. Real-Time Inhibitor Recession Measurements in Two Space Shuttle Reusable Solid Rocket Motors

    NASA Technical Reports Server (NTRS)

    McWhorter, B. B.; Ewing, M. E.; Bolton, D. E.; Albrechtsen, K. U.; Earnest, T. E.; Noble, T. C.; Longaker, M.

    2003-01-01

    Real-time internal motor insulation char line recession measurements have been evaluated for two full-scale static tests of the Space Shuttle Reusable Solid Rocket Motor (RSRM). These char line recession measurements were recorded on the forward facing propellant grain inhibitors to better understand the thermal performance of these inhibitors. The RSRM propellant grain inhibitors are designed to erode away during motor operation, thus making it difficult to use post-fire observations to determine inhibitor thermal performance. Therefore, this new internal motor instrumentation is invaluable in establishing an accurate understanding of inhibitor recession versus motor operation time. The data for the first test was presented at the 37th AIAA/ASME/SAE/ASEE Joint Propulsion Conference and Exhibit (AIAA 2001-3280) in July 2001. Since that time, a second full scale static test has delivered additional real-time data on inhibitor thermal performance. The evaluation of this data is presented in this paper. The second static test, in contrast to the first test, used a slightly different arrangement of instrumentation in the inhibitors. This instrumentation has yielded a better understanding of the inhibitor time dependent inboard tip recession. Graphs of inhibitor recession profiles with time are presented. Inhibitor thermal ablation models have been created from theoretical principals. The model predictions compare favorably with data from both tests. This verified modeling effort is important to support new inhibitor designs for a five segment Space Shuttle solid rocket motor. The internal instrumentation project on RSRM static tests is providing unique opportunities for other real-time internal motor measurements that could not otherwise be directly quantified.

  1. Real time drift measurement for colloidal probe atomic force microscope: a visual sensing approach

    SciTech Connect

    Wang, Yuliang Bi, Shusheng; Wang, Huimin

    2014-05-15

    Drift has long been an issue in atomic force microscope (AFM) systems and limits their ability to make long time period measurements. In this study, a new method is proposed to directly measure and compensate for the drift between AFM cantilevers and sample surfaces in AFM systems. This was achieved by simultaneously measuring z positions for beads at the end of an AFM colloidal probe and on sample surface through an off-focus image processing based visual sensing method. The working principle and system configuration are presented. Experiments were conducted to validate the real time drift measurement and compensation. The implication of the proposed method for regular AFM measurements is discussed. We believe that this technique provides a practical and efficient approach for AFM experiments requiring long time period measurement.

  2. Real-time three-dimensional surface measurement by color encoded light projection

    SciTech Connect

    Chen, S. Y.; Li, Y. F.; Guan, Q.; Xiao, G.

    2006-09-11

    Existing noncontact methods for surface measurement suffer from the disadvantages of poor reliability, low scanning speed, or high cost. The authors present a method for real-time three-dimensional data acquisition by a color-coded vision sensor composed of common components. The authors use a digital projector controlled by computer to generate desired color light patterns. The unique indexing of the light codes is a key problem and is solved in this study so that surface perception can be performed with only local pattern analysis of the neighbor color codes in a single image. Experimental examples and performance analysis are provided.

  3. Measuring Expression Levels of Endogenous Gli Genes by Immunoblotting and Real-Time PCR.

    PubMed

    Niewiadomski, Pawel; Rohatgi, Rajat

    2015-01-01

    Gli proteins are transcription factors that mediate the transcriptional effects of Hedgehog signaling in vertebrates. The activities of Gli2 and Gli3 are regulated primarily by posttranslational modifications, while Gli1 is mostly regulated at the transcriptional level. Detection of endogenous Gli proteins had been hampered by lack of good antibodies, but this problem has been mostly resolved in recent years. In this chapter we describe methods of detecting expression of endogenous Gli genes in whole-cell lysates and in subcellular fractions and also provide protocols for the measurement of Gli mRNA levels by quantitative real-time reverse transcriptase PCR (qPCR). PMID:26179041

  4. Real-Time Measurements of Aft Dome Insulation Erosion on Space Shuttle Reusable Solid Rocket Motor

    NASA Technical Reports Server (NTRS)

    McWhorter, Bruce; Ewing, Mark; Albrechtsen, Kevin; Noble, Todd; Longaker, Matt

    2004-01-01

    Real-time erosion of aft dome internal insulation was measured with internal instrumentation on a static test of a lengthened version of the Space Shuffle Reusable Solid Rocket Motor (RSRM). This effort marks the first time that real-time aft dome insulation erosion (Le., erosion due to the combined effects of thermochemical ablation and mechanical abrasion) was measured in this kind of large motor static test [designated as Engineering Test Motor number 3 (ETM3)I. This paper presents data plots of the erosion depth versus time. The data indicates general erosion versus time behavior that is in contrast to what would be expected from earlier analyses. Engineers have long known that the thermal environment in the aft dome is severe and that the resulting aft dome insulation erosion is significant. Models of aft dome erosion involve a two-step process of computational fluid dynamics (CFD) modeling and material ablation modeling. This modeling effort is complex. The time- dependent effects are difficult to verify with only prefire and postfire insulation measurements. Nozzle vectoring, slag accumulation, and changing boundary conditions will affect the time dependence of aft dome erosion. Further study of this data and continued measurements on future motors will increase our understanding of the aft dome flow and erosion environment.

  5. Real-time measurement of nonvolatile residue contamination in cleanroom environments

    NASA Astrophysics Data System (ADS)

    Mogan, Paul A.

    1994-10-01

    A Real-Time Instrument for the detection of non-volatile residues (NVR) was developed under an SBIR Phase I contract for the NASA Contamination Monitoring Laboratory at Kennedy Space Center (KSC) in Florida. A prototype device was fabricated and field tested in the Operations and Checkout Building and at the Orbiter Processing Facility at KSC. During the field testing, the data from the instrument was compared to standard KSC non-volatile residue measurements which are based on ASTM 1234/1235. Time fluctuations, unique to the real time measurement process, were also correlated to activity logs for the facility. The prototype instrument has already been applied commercially in the semiconductor industry to study NVR contamination in the plastic boats that wafers are stored and transported in during processing. This technology is being evaluated for use in the Hubble Space Telescope refurbishment mission to monitor NVR deposition during integration and processing prior to launch. This paper will discuss the temperature controlled SAW NVR instrument development program as well as the field testing done at KSC. Application to measurements of non-volatile residue in operational environments and comparisons with KSC NVR measurements will be made.

  6. In-situ tryptophan-like fluorescence: A real-time indicator of faecal contamination in drinking water supplies.

    PubMed

    Sorensen, J P R; Lapworth, D J; Marchant, B P; Nkhuwa, D C W; Pedley, S; Stuart, M E; Bell, R A; Chirwa, M; Kabika, J; Liemisa, M; Chibesa, M

    2015-09-15

    Enteric pathogens are typically inferred from the presence of surrogate indicator organisms such as thermotolerant (faecal) coliforms (TTCs). The analysis of TTCs requires time-consuming incubation in suitable laboratories, which can limit sampling resolution, particularly during critical pollution events. Here, we demonstrate the use of in-situ fluorimeters targeting tryptophan-like compounds as a rapid, reagentless indicator of TTCs in groundwater-derived potable water supplies in Africa. A range of other common indicators of TTCs were also determined including nitrate, turbidity, and sanitary risk survey scores. Sampling was conducted during both the dry and wet seasons to investigate seasonality. Tryptophan-like fluorescence was the most effective predictor of both presence/absence and number of TTCs during both seasons. Seasonal changes in tryptophan-like fluorescence in deeper supplies suggest it is transported more efficiently through the aquifer than TTCs. Moreover, the perennial elevated concentrations in some wells suggest it is more resilient than TTCs in groundwater. Therefore tryptophan-like fluorescence could also be a better indicator of some smaller, more easily transported, and long-lived, pathogenic enteric viruses. These sensors have the potential to be included in real-time pollution alert systems for drinking water supplies throughout the world, as well as for mapping enteric pathogen risks in developing regions.

  7. In-situ tryptophan-like fluorescence: A real-time indicator of faecal contamination in drinking water supplies.

    PubMed

    Sorensen, J P R; Lapworth, D J; Marchant, B P; Nkhuwa, D C W; Pedley, S; Stuart, M E; Bell, R A; Chirwa, M; Kabika, J; Liemisa, M; Chibesa, M

    2015-09-15

    Enteric pathogens are typically inferred from the presence of surrogate indicator organisms such as thermotolerant (faecal) coliforms (TTCs). The analysis of TTCs requires time-consuming incubation in suitable laboratories, which can limit sampling resolution, particularly during critical pollution events. Here, we demonstrate the use of in-situ fluorimeters targeting tryptophan-like compounds as a rapid, reagentless indicator of TTCs in groundwater-derived potable water supplies in Africa. A range of other common indicators of TTCs were also determined including nitrate, turbidity, and sanitary risk survey scores. Sampling was conducted during both the dry and wet seasons to investigate seasonality. Tryptophan-like fluorescence was the most effective predictor of both presence/absence and number of TTCs during both seasons. Seasonal changes in tryptophan-like fluorescence in deeper supplies suggest it is transported more efficiently through the aquifer than TTCs. Moreover, the perennial elevated concentrations in some wells suggest it is more resilient than TTCs in groundwater. Therefore tryptophan-like fluorescence could also be a better indicator of some smaller, more easily transported, and long-lived, pathogenic enteric viruses. These sensors have the potential to be included in real-time pollution alert systems for drinking water supplies throughout the world, as well as for mapping enteric pathogen risks in developing regions. PMID:26026711

  8. Using RADFET for the real-time measurement of gamma radiation dose rate

    NASA Astrophysics Data System (ADS)

    Andjelković, Marko S.; Ristić, Goran S.; Jakšić, Aleksandar B.

    2015-02-01

    RADFETs (RADiation sensitive Field Effect Transistors) are integrating ionizing radiation dosimeters operating on the principle of conversion of radiation-induced threshold voltage shift into absorbed dose. However, one of the major drawbacks of RADFETs is the inability to provide the information on the dose rate in real-time using the conventional absorbed dose measurement technique. The real-time monitoring of dose rate and absorbed dose can be achieved with the current mode dosimeters such as PN and PIN diodes/photodiodes, but these dosimeters have some limitations as absorbed dose meters and hence they are often not a suitable replacement for RADFETs. In that sense, this paper investigates the possibility of using the RADFET as a real-time dose rate meter so that it could be applied for simultaneous online measurement of the dose rate and absorbed dose. A RADFET sample, manufactured by Tyndall National Institute, Cork, Ireland, was tested as a dose rate meter under gamma irradiation from a Co-60 source. The RADFET was configured as a PN junction, such that the drain, gate and source terminals were grounded, while the radiation-induced current was measured at the bulk terminal, whereby the bulk was successively biased with 0 , 10 , 20  and 30 V. In zero-bias mode the radiation-induced current was unstable, but in the biased mode the current response was stable for the investigated dose rates from 0.65  to 32.1 Gy h-1 and up to the total absorbed dose of 25 Gy. The current increased with the dose rate in accordance with the power law, whereas the sensitivity of the current read-out was linear with respect to the applied bias voltage. Comparison with previously analyzed PIN photodiodes has shown that the investigated RADFET is competitive with PIN photodiodes as a gamma radiation dose rate meter and therefore has the potential to be employed for the real-time monitoring of the dose rate and absorbed dose.

  9. A Real-Time Measurement System for Long-Life Flood Monitoring and Warning Applications

    PubMed Central

    Marin-Perez, Rafael; García-Pintado, Javier; Gómez, Antonio Skarmeta

    2012-01-01

    A flood warning system incorporates telemetered rainfall and flow/water level data measured at various locations in the catchment area. Real-time accurate data collection is required for this use, and sensor networks improve the system capabilities. However, existing sensor nodes struggle to satisfy the hydrological requirements in terms of autonomy, sensor hardware compatibility, reliability and long-range communication. We describe the design and development of a real-time measurement system for flood monitoring, and its deployment in a flash-flood prone 650 km2 semiarid watershed in Southern Spain. A developed low-power and long-range communication device, so-called DatalogV1, provides automatic data gathering and reliable transmission. DatalogV1 incorporates self-monitoring for adapting measurement schedules for consumption management and to capture events of interest. Two tests are used to assess the success of the development. The results show an autonomous and robust monitoring system for long-term collection of water level data in many sparse locations during flood events. PMID:22666028

  10. Flexible imaging payload for real-time fluorescent biological imaging in parabolic, suborbital and space analog environments

    NASA Astrophysics Data System (ADS)

    Bamsey, Matthew T.; Paul, Anna-Lisa; Graham, Thomas; Ferl, Robert J.

    2014-10-01

    utilized to assess, in real-time, the response of plants to novel environments including various spaceflight analogs, including several parabolic flight environments as well as hypobaric plant growth chambers. Basic performance results obtained under these operational environments, as well as laboratory-based tests are described. The Flex Imager has also been designed to be compatible with emerging suborbital platforms.

  11. Real time M2 and beam parameter product measurement using GigE CMOS sensors

    NASA Astrophysics Data System (ADS)

    Scaggs, Michael; Haas, Gil

    2016-03-01

    The ISO 11146-1 standard for measurement of a laser's M-square requires the minimum measurement of five (5) spatial profiles within the first Rayleigh range and an addition five (5) outside the second Rayleigh range. The first five spatial profiles within the first Rayleigh range establish the beam waist and its location; the second five beyond the second Rayleigh range establish the divergence or convergence from the focusing lens for the M-square computation. The majority of methods used to date are all time averaged and as such are incapable of a real time M-square measurement. We present an ISO 11146-1 compliant method for measuring single shot M-square or beam parameter product values or the measurement of continuous wave sources at rates greater than five frames per second utilizing a pair of GigE based CMOS sensors. One GigE CMOS sensor is setup to measure the minimum of five spots within the first Rayleigh range for the establishment of the beam waist and its location. A second GigE CMOS sensor is setup to measure the five spatial profiles beyond the second Rayleigh range for the determination of the beam divergence from the focusing lens. Both GigE cameras utilize optics that passively create multiple spatial time slices of the beam and superimpose these time slices on the CMOS sensor in real time resulting in the ability to make single pulse measurements or continuous wave measurements at speeds of greater than five frames per second with full ISO 11146-1 compliance.

  12. Obtaining Reliable Predictions of Terrestrial Energy Coupling From Real-Time Solar Wind Measurements

    NASA Technical Reports Server (NTRS)

    Weimer, Daniel R.

    2002-01-01

    Measurements of the interplanetary magnetic field (IMF) from the ACE (Advanced Composition Explorer), Wind, IMP-8 (Interplanetary Monitoring Platform), and Geotail spacecraft have revealed that the IMF variations are contained in phase planes that are tilted with respect to the propagation direction, resulting in continuously variable changes in propagation times between spacecraft, and therefore, to the Earth. Techniques for using 'minimum variance analysis' have been developed in order to be able to measure the phase front tilt angles, and better predict the actual propagation times from the L1 orbit to the Earth, using only the real-time IMF measurements from one spacecraft. The use of empirical models with the IMF measurements at L1 from ACE (or future satellites) for predicting 'space weather' effects has also been demonstrated.

  13. Using Indirect Turbulence Measurements for Real-Time Parameter Estimation in Turbulent Air

    NASA Technical Reports Server (NTRS)

    Martos, Borja; Morelli, Eugene A.

    2012-01-01

    The use of indirect turbulence measurements for real-time estimation of parameters in a linear longitudinal dynamics model in atmospheric turbulence was studied. It is shown that measuring the atmospheric turbulence makes it possible to treat the turbulence as a measured explanatory variable in the parameter estimation problem. Commercial off-the-shelf sensors were researched and evaluated, then compared to air data booms. Sources of colored noise in the explanatory variables resulting from typical turbulence measurement techniques were identified and studied. A major source of colored noise in the explanatory variables was identified as frequency dependent upwash and time delay. The resulting upwash and time delay corrections were analyzed and compared to previous time shift dynamic modeling research. Simulation data as well as flight test data in atmospheric turbulence were used to verify the time delay behavior. Recommendations are given for follow on flight research and instrumentation.

  14. Toward Real-Time Automated Detection of Turns during Gait Using Wearable Inertial Measurement Units

    PubMed Central

    Novak, Domen; Goršič, Maja; Podobnik, Janez; Munih, Marko

    2014-01-01

    Previous studies have presented algorithms for detection of turns during gait using wearable sensors, but those algorithms were not built for real-time use. This paper therefore investigates the optimal approach for real-time detection of planned turns during gait using wearable inertial measurement units. Several different sensor positions (head, back and legs) and three different detection criteria (orientation, angular velocity and both) are compared with regard to their ability to correctly detect turn onset. Furthermore, the different sensor positions are compared with regard to their ability to predict the turn direction and amplitude. The evaluation was performed on ten healthy subjects who performed left/right turns at three amplitudes (22, 45 and 90 degrees). Results showed that turn onset can be most accurately detected with sensors on the back and using a combination of orientation and angular velocity. The same setup also gives the best prediction of turn direction and amplitude. Preliminary measurements with a single amputee were also performed and highlighted important differences such as slower turning that need to be taken into account. PMID:25310470

  15. Optimized quantum sensing with a single electron spin using real-time adaptive measurements

    NASA Astrophysics Data System (ADS)

    Bonato, C.; Blok, M. S.; Dinani, H. T.; Berry, D. W.; Markham, M. L.; Twitchen, D. J.; Hanson, R.

    2016-03-01

    Quantum sensors based on single solid-state spins promise a unique combination of sensitivity and spatial resolution. The key challenge in sensing is to achieve minimum estimation uncertainty within a given time and with high dynamic range. Adaptive strategies have been proposed to achieve optimal performance, but their implementation in solid-state systems has been hindered by the demanding experimental requirements. Here, we realize adaptive d.c. sensing by combining single-shot readout of an electron spin in diamond with fast feedback. By adapting the spin readout basis in real time based on previous outcomes, we demonstrate a sensitivity in Ramsey interferometry surpassing the standard measurement limit. Furthermore, we find by simulations and experiments that adaptive protocols offer a distinctive advantage over the best known non-adaptive protocols when overhead and limited estimation time are taken into account. Using an optimized adaptive protocol we achieve a magnetic field sensitivity of 6.1 ± 1.7 nT Hz-1/2 over a wide range of 1.78 mT. These results open up a new class of experiments for solid-state sensors in which real-time knowledge of the measurement history is exploited to obtain optimal performance.

  16. In situ real-time measurement of physical characteristics of airborne bacterial particles

    NASA Astrophysics Data System (ADS)

    Jung, Jae Hee; Lee, Jung Eun

    2013-12-01

    Bioaerosols, including aerosolized bacteria, viruses, and fungi, are associated with public health and environmental problems. One promising control method to reduce the harmful effects of bioaerosols is thermal inactivation via a continuous-flow high-temperature short-time (HTST) system. However, variations in bioaerosol physical characteristics - for example, the particle size and shape - during the continuous-flow inactivation process can change the transport properties in the air, which can affect particle deposition in the human respiratory system or the filtration efficiency of ventilation systems. Real-time particle monitoring techniques are a desirable alternative to the time-consuming process of microscopic analysis that is conventionally used in sampling and particle characterization. Here, we report in situ real-time optical scattering measurements of the physical characteristics of airborne bacteria particles following an HTST process in a continuous-flow system. Our results demonstrate that the aerodynamic diameter of bacterial aerosols decreases when exposed to a high-temperature environment, and that the shape of the bacterial cells is significantly altered. These variations in physical characteristics using optical scattering measurements were found to be in agreement with the results of scanning electron microscopy analysis.

  17. Real-time high-resolution heterodyne-based measurements of spectral dynamics in fibre lasers

    PubMed Central

    Sugavanam, Srikanth; Fabbri, Simon; Le, Son Thai; Lobach, Ivan; Kablukov, Sergey; Khorev, Serge; Churkin, Dmitry

    2016-01-01

    Conventional tools for measurement of laser spectra (e.g. optical spectrum analysers) capture data averaged over a considerable time period. However, the generation spectrum of many laser types may involve spectral dynamics whose relatively fast time scale is determined by their cavity round trip period, calling for instrumentation featuring both high temporal and spectral resolution. Such real-time spectral characterisation becomes particularly challenging if the laser pulses are long, or they have continuous or quasi-continuous wave radiation components. Here we combine optical heterodyning with a technique of spatio-temporal intensity measurements that allows the characterisation of such complex sources. Fast, round-trip-resolved spectral dynamics of cavity-based systems in real-time are obtained, with temporal resolution of one cavity round trip and frequency resolution defined by its inverse (85 ns and 24 MHz respectively are demonstrated). We also show how under certain conditions for quasi-continuous wave sources, the spectral resolution could be further increased by a factor of 100 by direct extraction of phase information from the heterodyned dynamics or by using double time scales within the spectrogram approach. PMID:26984634

  18. Real-time setup to measure radon emission during rock deformation: implications for geochemical surveillance

    NASA Astrophysics Data System (ADS)

    Tuccimei, P.; Mollo, S.; Soligo, M.; Scarlato, P.; Castelluccio, M.

    2015-05-01

    Laboratory experiments can represent a valid approach to unravel the complex interplay between the geochemical behaviour of radon and rock deformation mechanisms. In light of this, we present a new real-time experimental setup for analysing in continuum the alpha-emitting 222Rn and 220Rn daughters over variable stress-strain regimes. The most innovative segment of this setup consists of the radon accumulation chamber obtained from a tough and durable material that can host large cylindrical rock samples. The accumulation chamber is connected, in a closed-loop configuration, to a gas-drying unit and to a RAD7 radon monitor. A recirculating pump moves the gas from the rock sample to a solid-state detector for alpha counting of radon and thoron progeny. The measured radon signal is enhanced by surrounding the accumulation chamber with a digitally controlled heating belt. As the temperature is increased, the number of effective collisions of radon atoms increases favouring the diffusion of radon through the material and reducing the analytical uncertainty. The accumulation chamber containing the sample is then placed into a uniaxial testing apparatus where the axial deformation is measured throughout a linear variable displacement transducer. A dedicated software allows obtaining a variety of stress-strain regimes from fast deformation rates to long-term creep tests. Experiments conducted with this new real-time setup have important ramifications for the interpretation of geochemical anomalies recorded prior to volcanic eruptions or earthquakes.

  19. A robust adaptive denoising framework for real-time artifact removal in scalp EEG measurements

    NASA Astrophysics Data System (ADS)

    Kilicarslan, Atilla; Grossman, Robert G.; Contreras-Vidal, Jose Luis

    2016-04-01

    Objective. Non-invasive measurement of human neural activity based on the scalp electroencephalogram (EEG) allows for the development of biomedical devices that interface with the nervous system for scientific, diagnostic, therapeutic, or restorative purposes. However, EEG recordings are often considered as prone to physiological and non-physiological artifacts of different types and frequency characteristics. Among them, ocular artifacts and signal drifts represent major sources of EEG contamination, particularly in real-time closed-loop brain-machine interface (BMI) applications, which require effective handling of these artifacts across sessions and in natural settings. Approach. We extend the usage of a robust adaptive noise cancelling (ANC) scheme ({H}∞ filtering) for removal of eye blinks, eye motions, amplitude drifts and recording biases simultaneously. We also characterize the volume conduction, by estimating the signal propagation levels across all EEG scalp recording areas due to ocular artifact generators. We find that the amplitude and spatial distribution of ocular artifacts vary greatly depending on the electrode location. Therefore, fixed filtering parameters for all recording areas would naturally hinder the true overall performance of an ANC scheme for artifact removal. We treat each electrode as a separate sub-system to be filtered, and without the loss of generality, they are assumed to be uncorrelated and uncoupled. Main results. Our results show over 95-99.9% correlation between the raw and processed signals at non-ocular artifact regions, and depending on the contamination profile, 40-70% correlation when ocular artifacts are dominant. We also compare our results with the offline independent component analysis and artifact subspace reconstruction methods, and show that some local quantities are handled better by our sample-adaptive real-time framework. Decoding performance is also compared with multi-day experimental data from 2 subjects

  20. Hands-free, Wireless Goggles for Near-infrared Fluorescence and Real-time Image-guided Surgery

    PubMed Central

    Liu, Yang; Bauer, Adam Q.; Akers, Walter; Sudlow, Gail; Liang, Kexian; Shen, Duanwen; Berezin, Mikhail; Culver, Joseph P.; Achilefu, Samuel

    2011-01-01

    Background Current cancer management faces several challenges, including the occurrence of residual tumor after resection, the use of radioactive materials or high concentrations of blue dyes for sentinel lymph node (SLN) biopsy, and use of bulky systems in surgical suites for image guidance. To overcome these limitations, we developed a real-time intraoperative imaging device that, when combined with near infrared (NIR) fluorescent molecular probes, can aid identification of tumor margins, guide surgical resections, map SLNs, and transfer acquired data wirelessly for remote analysis. Methods We developed a new compact, wireless, wearable, and battery-operated device that allows hands-free operation by surgeons. A CCD-based consumer-grade night vision viewer was used to develop the detector portion of the device and the light source portion was developed from a compact headlamp. This piece was retrofitted to provide both NIR excitation and white light illumination simultaneously. Wireless communication was enabled by integrating a battery-operated miniature radio-frequency video transmitter into the system. We applied the device in several types of oncologic surgical procedures in murine models, including SLN mapping, fluorescence-guided tumor resection, and surgery under remote expert guidance. Results Unlike conventional imaging instruments, the device directly displays fluorescence information on its eyepiece. When employed in SLN mapping, the locations of SLNs were clearly visualized, even with tracer level dosing of a NIR fluorescent dye, indocyanine green. When utilized in tumor resection, tumor margins and small nodules not visible to the naked eye were readily visualized. In a simulated point-of-care setting, tumors were successfully located and removed under remote guidance using the wireless feature of the device. Importantly, the total cost of this prototype system ($1200) is significantly lower than existing imaging instruments. Conclusion Our results

  1. Real-time measurement of quasiparticle tunneling in a single-junction transmon qubit using feedback

    NASA Astrophysics Data System (ADS)

    Ristè, Diego; Bultink, Niels; Tiggelman, Marijn; Schouten, Raymond; Lehnert, Konrad; Dicarlo, Leonardo

    2013-03-01

    With coherence times of superconducting qubits now exceeding 100 μs , the contribution of quasiparticle (QP) tunneling to qubit relaxation and dephasing becomes potentially relevant. We report the real-time measurement of QP tunneling across the single junction of a 3D transmon qubit. We integrate recent developments in projective qubit readout with 99 % fidelity and feedback-based reset to transform the qubit into a charge-parity detector with 6 μs resolution. We detect a symmetric random telegraph signal matching a QP tunneling time of 0 . 8 ms . By measuring the correlation function of charge parity conditioned on specific initial and final qubit states, we determine that most QP tunneling does not induce qubit transitions, in contradiction with recent theory. We extract a QP-induced qubit relaxation time T1qp ~ 3 ms , decidedly not limiting the measured T1 = 0 . 14 ms . Research supported by NWO, FOM, and EU Project SOLID.

  2. Application of real-time digitization techniques in beam measurement for accelerators

    NASA Astrophysics Data System (ADS)

    Zhao, Lei; Zhan, Lin-Song; Gao, Xing-Shun; Liu, Shu-Bin; An, Qi

    2016-04-01

    Beam measurement is very important for accelerators. In this paper, modern digital beam measurement techniques based on IQ (In-phase & Quadrature-phase) analysis are discussed. Based on this method and high-speed high-resolution analog-to-digital conversion, we have completed three beam measurement electronics systems designed for the China Spallation Neutron Source (CSNS), Shanghai Synchrotron Radiation Facility (SSRF), and Accelerator Driven Sub-critical system (ADS). Core techniques of hardware design and real-time system calibration are discussed, and performance test results of these three instruments are also presented. Supported by National Natural Science Foundation of China (11205153, 10875119), Knowledge Innovation Program of the Chinese Academy of Sciences (KJCX2-YW-N27), and the Fundamental Research Funds for the Central Universities (WK2030040029),and the CAS Center for Excellence in Particle Physics (CCEPP).

  3. Adapting CALIPSO Climate Measurements for Near Real Time Analyses and Forecasting

    NASA Technical Reports Server (NTRS)

    Vaughan, Mark A.; Trepte, Charles R.; Winker, David M.; Avery, Melody A.; Campbell, James; Hoff, Ray; Young, Stuart; Getzewich, Brian J.; Tackett, Jason L.; Kar, Jayanta

    2011-01-01

    The Cloud-Aerosol Lidar and Infrared Pathfinder satellite Observations (CALIPSO) mission was originally conceived and designed as a climate measurements mission, with considerable latency between data acquisition and the release of the level 1 and level 2 data products. However, the unique nature of the CALIPSO lidar backscatter profiles quickly led to the qualitative use of CALIPSO?s near real time (i.e., ? expedited?) lidar data imagery in several different forecasting applications. To enable quantitative use of their near real time analyses, the CALIPSO project recently expanded their expedited data catalog to include all of the standard level 1 and level 2 lidar data products. Also included is a new cloud cleared level 1.5 profile product developed for use by operational forecast centers for verification of aerosol predictions. This paper describes the architecture and content of the CALIPSO expedited data products. The fidelity and accuracy of the expedited products are assessed via comparisons to the standard CALIPSO data products.

  4. Real-time dual-loop electric current measurement for label-free nanofluidic preconcentration chip.

    PubMed

    Chung, Pei-Shan; Fan, Yu-Jui; Sheen, Horn-Jiunn; Tian, Wei-Cheng

    2015-01-01

    An electrokinetic trapping (EKT)-based nanofluidic preconcentration device with the capability of label-free monitoring trapped biomolecules through real-time dual-loop electric current measurement was demonstrated. Universal current-voltage (I-V) curves of EKT-based preconcentration devices, consisting of two microchannels connected by ion-selective channels, are presented for functional validation and optimal operation; universal onset current curves indicating the appearance of the EKT mechanism serve as a confirmation of the concentrating action. The EKT mechanism and the dissimilarity in the current curves related to the volume flow rate (Q), diffusion coefficient (D), and diffusion layer (DL) thickness were explained by a control volume model with a five-stage preconcentration process. Different behaviors of the trapped molecular plug were categorized based on four modes associated with different degrees of electroosmotic instability (EOI). A label-free approach to preconcentrating (bio)molecules and monitoring the multibehavior molecular plug was demonstrated through real-time electric current monitoring, rather than through the use of microscope images.

  5. Dissolution Dynamic Nuclear Polarization Instrumentation for Real-time Enzymatic Reaction Rate Measurements by NMR.

    PubMed

    Balzan, Riccardo; Fernandes, Laetitia; Comment, Arnaud; Pidial, Laetitia; Tavitian, Bertrand; Vasos, Paul R

    2016-01-01

    The main limitation of NMR-based investigations is low sensitivity. This prompts for long acquisition times, thus preventing real-time NMR measurements of metabolic transformations. Hyperpolarization via dissolution DNP circumvents part of the sensitivity issues thanks to the large out-of-equilibrium nuclear magnetization stemming from the electron-to-nucleus spin polarization transfer. The high NMR signal obtained can be used to monitor chemical reactions in real time. The downside of hyperpolarized NMR resides in the limited time window available for signal acquisition, which is usually on the order of the nuclear spin longitudinal relaxation time constant, T1, or, in favorable cases, on the order of the relaxation time constant associated with the singlet-state of coupled nuclei, TLLS. Cellular uptake of endogenous molecules and metabolic rates can provide essential information on tumor development and drug response. Numerous previous hyperpolarized NMR studies have demonstrated the relevancy of pyruvate as a metabolic substrate for monitoring enzymatic activity in vivo. This work provides a detailed description of the experimental setup and methods required for the study of enzymatic reactions, in particular the pyruvate-to-lactate conversion rate in presence of lactate dehydrogenase (LDH), by hyperpolarized NMR. PMID:26967906

  6. Advanced video extensometer for non-contact, real-time, high-accuracy strain measurement.

    PubMed

    Pan, Bing; Tian, Long

    2016-08-22

    We developed an advanced video extensometer for non-contact, real-time, high-accuracy strain measurement in material testing. In the established video extensometer, a "near perfect and ultra-stable" imaging system, combining the idea of active imaging with a high-quality bilateral telecentric lens, is constructed to acquire high-fidelity video images of the test sample surface, which is invariant to ambient lighting changes and small out-of-plane motions occurred between the object surface and image plane. In addition, an efficient and accurate inverse compositional Gauss-Newton algorithm incorporating a temporal initial guess transfer scheme and a high-accuracy interpolation method is employed to achieve real-time, high-accuracy displacement tracking with negligible bias error. Tensile tests of an aluminum sample and a carbon fiber filament sample were performed to demonstrate the efficiency, repeatability and accuracy of the developed advanced video extensometer. The results indicate that longitudinal and transversal strains can be estimated and plotted at a rate of 117 fps and with a maximum strain error less than 30 microstrains. PMID:27557188

  7. Real-time analysis and selection of methylated DNA by fluorescence-activated single molecule sorting in a nanofluidic channel

    PubMed Central

    Cipriany, Benjamin R.; Murphy, Patrick J.; Hagarman, James A.; Cerf, Aline; Latulippe, David; Levy, Stephen L.; Benítez, Jaime J.; Tan, Christine P.; Topolancik, Juraj; Soloway, Paul D.; Craighead, Harold G.

    2012-01-01

    Epigenetic modifications, such as DNA and histone methylation, are responsible for regulatory pathways that affect disease. Current epigenetic analyses use bisulfite conversion to identify DNA methylation and chromatin immunoprecipitation to collect molecules bearing a specific histone modification. In this work, we present a proof-of-principle demonstration for a new method using a nanofluidic device that combines real-time detection and automated sorting of individual molecules based on their epigenetic state. This device evaluates the fluorescence from labeled epigenetic modifications to actuate sorting. This technology has demonstrated up to 98% accuracy in molecule sorting and has achieved postsorting sample recovery on femtogram quantities of genetic material. We have applied it to sort methylated DNA molecules using simultaneous, multicolor fluorescence to identify methyl binding domain protein-1 (MBD1) bound to full-duplex DNA. The functionality enabled by this nanofluidic platform now provides a workflow for color-multiplexed detection, sorting, and recovery of single molecules toward subsequent DNA sequencing. PMID:22586076

  8. Real-Time Protein and Cell Binding Measurements on Hydroxyapatite Coatings.

    PubMed

    Vilardell, A M; Cinca, N; Jokinen, A; Garcia-Giralt, N; Dosta, S; Cano, I G; Guilemany, J M

    2016-01-01

    Although a lot of in vitro and in vivo assays have been performed during the last few decades years for hydroxyapatite bioactive coatings, there is a lack of exploitation of real-time in vitro interaction measurements. In the present work, real-time interactions for a plasma sprayed hydroxyapatite coating were measured by a Multi-Parametric Surface Plasmon Resonance (MP-SPR), and the results were compared with standard traditional cell viability in vitro assays. MP-SPR is proven to be suitable not only for measurement of molecule-molecule interactions but also molecule-material interaction measurements and cell interaction. Although SPR is extensively utilized in interaction studies, recent research of protein or cell adsorption on hydroxyapatite coatings for prostheses applications was not found. The as-sprayed hydroxyapatite coating resulted in 62.4% of crystalline phase and an average thickness of 24 ± 6 μm. The MP-SPR was used to measure lysozyme protein and human mesenchymal stem cells interaction to the hydroxyapatite coating. A comparison between the standard gold sensor and Hydroxyapatite (HA)-plasma coated sensor denoted a clearly favourable cell attachment on HA coated sensor as a significantly higher signal of cell binding was detected. Moreover, traditional cell viability and proliferation tests showed increased activity with culture time indicating that cells were proliferating on HA coating. Cells show homogeneous distribution and proliferation along the HA surface between one and seven days with no significant mortality. Cells were flattened and spread on rough surfaces from the first day, with increasing cytoplasmatic extensions during the culture time. PMID:27618911

  9. Real-Time Protein and Cell Binding Measurements on Hydroxyapatite Coatings

    PubMed Central

    Vilardell, A. M.; Cinca, N.; Jokinen, A.; Garcia-Giralt, N.; Dosta, S.; Cano, I. G.; Guilemany, J. M.

    2016-01-01

    Although a lot of in vitro and in vivo assays have been performed during the last few decades years for hydroxyapatite bioactive coatings, there is a lack of exploitation of real-time in vitro interaction measurements. In the present work, real-time interactions for a plasma sprayed hydroxyapatite coating were measured by a Multi-Parametric Surface Plasmon Resonance (MP-SPR), and the results were compared with standard traditional cell viability in vitro assays. MP-SPR is proven to be suitable not only for measurement of molecule–molecule interactions but also molecule–material interaction measurements and cell interaction. Although SPR is extensively utilized in interaction studies, recent research of protein or cell adsorption on hydroxyapatite coatings for prostheses applications was not found. The as-sprayed hydroxyapatite coating resulted in 62.4% of crystalline phase and an average thickness of 24 ± 6 μm. The MP-SPR was used to measure lysozyme protein and human mesenchymal stem cells interaction to the hydroxyapatite coating. A comparison between the standard gold sensor and Hydroxyapatite (HA)-plasma coated sensor denoted a clearly favourable cell attachment on HA coated sensor as a significantly higher signal of cell binding was detected. Moreover, traditional cell viability and proliferation tests showed increased activity with culture time indicating that cells were proliferating on HA coating. Cells show homogeneous distribution and proliferation along the HA surface between one and seven days with no significant mortality. Cells were flattened and spread on rough surfaces from the first day, with increasing cytoplasmatic extensions during the culture time. PMID:27618911

  10. (abstract) Using GPS Measurements to Identify Global Ionospheric Storms in Near Real-Time

    NASA Technical Reports Server (NTRS)

    Ho, C. M.; Mannucci, A. J.; Lindqwister, U. J.; Rao, A. M.; Pi, X.; Wilson, B. D.; Yuan, D. N.; Reyes, M.

    1996-01-01

    The solar wind interacts with the Earth's magnetosphere, eventually dissipating energy into the ionosphere and atmosphere. As a terminator, the ionosphere responds to magnetic storms, which is very important in understanding the energy coupling process between the Sun and the Earth and in forecasting space weather changes.The worldwide GPS network, for the first time, makes near real-time global ionospheric TEC measurements a possibility. Based on these measurements, global ionospheric TEC maps are generated with time resolution of from 5 minutes to hours. Using these maps, we can analyze the global evolution of ionospheric storms on temporal and spatial scales, which have been dificult to study before. We find that for certain types of storms (such as TID-driven), it is possible to identify them near onset and issue warning signals during the early stages. Main attention has been paid on northern hemispheric winter storms. Their common features and physical mechanisms are being investigated.

  11. A Real-Time Optical Tracking and Measurement Processing System for Flying Targets

    PubMed Central

    Guo, Pengyu; Ding, Shaowen; Zhang, Hongliang; Zhang, Xiaohu

    2014-01-01

    Optical tracking and measurement for flying targets is unlike the close range photography under a controllable observation environment, which brings extreme conditions like diverse target changes as a result of high maneuver ability and long cruising range. This paper first designed and realized a distributed image interpretation and measurement processing system to achieve resource centralized management, multisite simultaneous interpretation and adaptive estimation algorithm selection; then proposed a real-time interpretation method which contains automatic foreground detection, online target tracking, multiple features location, and human guidance. An experiment is carried out at performance and efficiency evaluation of the method by semisynthetic video. The system can be used in the field of aerospace tests like target analysis including dynamic parameter, transient states, and optical physics characteristics, with security control. PMID:24987748

  12. A real-time optical tracking and measurement processing system for flying targets.

    PubMed

    Guo, Pengyu; Ding, Shaowen; Zhang, Hongliang; Zhang, Xiaohu

    2014-01-01

    Optical tracking and measurement for flying targets is unlike the close range photography under a controllable observation environment, which brings extreme conditions like diverse target changes as a result of high maneuver ability and long cruising range. This paper first designed and realized a distributed image interpretation and measurement processing system to achieve resource centralized management, multisite simultaneous interpretation and adaptive estimation algorithm selection; then proposed a real-time interpretation method which contains automatic foreground detection, online target tracking, multiple features location, and human guidance. An experiment is carried out at performance and efficiency evaluation of the method by semisynthetic video. The system can be used in the field of aerospace tests like target analysis including dynamic parameter, transient states, and optical physics characteristics, with security control.

  13. Real-time measurement of sub-PPM concentrations of airborne chemicals in semiconductor manufacturing.

    PubMed

    Corn, M; Cohen, R

    1993-01-01

    Real-time mass spectroscopy (ICAMS) can provide hourly or daily estimates of employee exposure. Field calibration of the unit indicated essentially linear response from 0.01 (Cellosolve Acetate) and 0.03 ppm (Diglyme) to 1 ppm in semiconductor cleanrooms. The instrument can be programmed for 4 minute readings on a single compound, or for rotation among several chemicals, each requiring 4 minute dwell times for analysis. In contrast to full shift personal sampling methods to measure exposure, ICAMS offers insights into the occurrence of peak exposures. In addition, in the occupational environment ICAMS results can be integrated to estimate full-shift within a zone exposures. Thus, the ICAMS extends measurement sensitivities below those currently available and offers a viable alternative to personal sampling in the semiconductor industry. PMID:9857292

  14. Real-time dielectric-film thickness measurement system for plasma processing chamber wall monitoring.

    PubMed

    Kim, Jin-Yong; Chung, Chin-Wook

    2015-12-01

    An in-situ real-time processing chamber wall monitoring system was developed. In order to measure the thickness of the dielectric film, two frequencies of small sinusoidal voltage (∼1 V) signals were applied to an electrically floated planar type probe, which is positioned at chamber wall surface, and the amplitudes of the currents and the phase differences between the voltage and current were measured. By using an equivalent sheath circuit model including a sheath capacitance, the dielectric thickness can be obtained. Experiments were performed in various plasma condition, and reliable dielectric film thickness was obtained regardless of the plasma properties. In addition, availability in commercial chamber for plasma enhanced chemical vapor deposition was verified. This study is expected to contribute to the control of etching and deposition processes and optimization of periodic maintenance in semiconductor manufacturing process.

  15. High-resolution micromechanical measurement in real time of forces exerted by living cells

    PubMed Central

    Swierczewski, Robert; Hedley, John; Redfern, Chris P. F.

    2016-01-01

    ABSTRACT The aim of this study was to compare uniaxial traction forces exerted by different cell types using a novel sensor design and to test the dependence of measured forces on cytoskeletal integrity. The sensor design detects forces generated between 2 contact points by cells spanning a gap. The magnitude of these forces varied according to cell type and were dependent on cytoskeletal integrity. The response time for drug-induced cytoskeletal disruption also varied between cell types: dermal fibroblasts exerted the greatest forces and had the slowest drug response times; EBV-transformed epithelial cells also had slow cytoskeletal depolymerisation times but exerted the lowest forces overall. Conversely, lung epithelial tumor cells exerted low forces but had the fastest depolymerisation drug response. These results provide proof of principle for a new design of force-measurement sensor based on optical interferometry, an approach that can be used to study cytoskeletal dynamics in real time. PMID:26645140

  16. Self-referencing luminescent optrodes for non-invasive, real time measurement of extracellular flux

    NASA Astrophysics Data System (ADS)

    McLamore, Eric S.; Porterfield, D. Marshall; Borgens, R. B.; Banks, M. K.

    2011-05-01

    Autonomous technologies are needed which are capable of sensing real time changes in biophysical transport across cell membranes/organelles. These technologies must not only be highly sensitive/selective, but must also be minimally invasive/intrusive, causing no significant physical/chemical effects on cell behavior. Challenges with mainstream technologies (e.g., assays, fluorescent dyes, microsensors) include signal noise/drift, low temporal resolution, requirement of large sample sizes, cytoxicity, organelle sequestration, and intracellular buffering. Recent advancements in fiber optics have greatly enhanced the performance of microsensors (e.g., increased sensitivity/selectivity, response time), but used in concentration mode near cells/tissues these sensors suffer from poor signal to noise ratio. Work over the last few decades has advanced microsensor utility through sensing modalities that extend and enhance the data recorded by sensors. This technique, known as self-referencing, converts static micro/nanosensors with otherwise low signal-to-noise ratios into dynamic flux sensors capable of filtering out signals not associated with active transport by acquisition and amplification of differential signals. Here, we demonstrate the use of a self-referencing referencing frequency domain fiber optic microsensor containing a quenched dye (platinum tetrakis-pentafluorophenyl porphyrin) for quantifying cell/tissue flux in biomedical, agricultural, and environmental applications.

  17. Real-time HF Radio Absorption Maps Incorporating Riometer and Satellite Measurements

    NASA Astrophysics Data System (ADS)

    Rogers, Neil; Honary, Farideh; Warrington, Mike; Stocker, Alan; Danskin, Donald

    2016-04-01

    A real-time model of HF radio propagation conditions is being developed as a service for aircraft communications at high latitudes. An essential component of this is a real-time map of the absorption of HF (3-30 MHz) radio signals in the D-region ionosphere. Empirical, climatological Polar Cap Absorption (PCA) models in common usage cannot account for day-to-day variations in ionospheric composition and are inaccurate during the large changes in recombination rate at twilight. However, parameters of such models may be optimised using an age-weighted regression to absorption measurements from riometers in Canada and Scandinavia. Such parameters include the day- and night-time sensitivity to proton flux as measured on a geostationary satellite (GOES). Modelling the twilight transition as a linear or Gauss error function over a range of solar-zenith angles (χl < χ < χu) is found to provide greater accuracy than 'Earth shadow' methods (as applied in the Sodankylä Ionospheric Chemistry (SIC) model, for example) due to a more gradual ionospheric response for χ < 90° . The fitted χl parameter is found to be most variable, with smaller values (as low as 60°) post-sunrise compared with pre-sunset. Correlation coefficients of model parameters between riometers are presented and these provide a means of appropriately weighting individual riometer contributions in an assimilative PCA model. At times outside of PCA events, the probability of absorption in the auroral zones is related to the energetic electron flux inside the precipitation loss cone, as measured on the polar-orbiting POES satellites. This varies with magnetic local time, magnetic latitude and geomagnetic activity, and its relation to the real-time solar wind - magnetospheric coupling function [Newell et al., 2007] will be presented. Reference: Newell, P. T., T. Sotirelis, K. Liou, C.-I. Meng, and F. J. Rich (2007), A nearly universal solar wind-magnetosphere coupling function inferred from 10

  18. Measuring Sea-Ice Motion in the Arctic with Real Time Photogrammetry

    NASA Astrophysics Data System (ADS)

    Brozena, J. M.; Hagen, R. A.; Peters, M. F.; Liang, R.; Ball, D.

    2014-12-01

    The U.S. Naval Research Laboratory, in coordination with other groups, has been collecting sea-ice data in the Arctic off the north coast of Alaska with an airborne system employing a radar altimeter, LiDAR and a photogrammetric camera in an effort to obtain wide swaths of measurements coincident with Cryosat-2 footprints. Because the satellite tracks traverse areas of moving pack ice, precise real-time estimates of the ice motion are needed to fly a survey grid that will yield complete data coverage. This requirement led us to develop a method to find the ice motion from the aircraft during the survey. With the advent of real-time orthographic photogrammetric systems, we developed a system that measures the sea ice motion in-flight, and also permits post-process modeling of sea ice velocities to correct the positioning of radar and LiDAR data. For the 2013 and 2014 field seasons, we used this Real Time Ice Motion Estimation (RTIME) system to determine ice motion using Applanix's Inflight Ortho software with an Applanix DSS439 system. Operationally, a series of photos were taken in the survey area. The aircraft then turned around and took more photos along the same line several minutes later. Orthophotos were generated within minutes of collection and evaluated by custom software to find photo footprints and potential overlap. Overlapping photos were passed to the correlation software, which selects a series of "chips" in the first photo and looks for the best matches in the second photo. The correlation results are then passed to a density-based clustering algorithm to determine the offset of the photo pair. To investigate any systematic errors in the photogrammetry, we flew several flight lines over a fixed point on various headings, over an area of non-moving ice in 2013. The orthophotos were run through the correlation software to find any residual offsets, and run through additional software to measure chip positions and offsets relative to the aircraft

  19. Endothelial cell adhesion in real time. Measurements in vitro by tandem scanning confocal image analysis.

    PubMed Central

    Davies, P F; Robotewskyj, A; Griem, M L

    1993-01-01

    Real time measurements of cell-substratum adhesion in endothelial cells were obtained by tandem scanning confocal microscopy of sites of focal contact (focal adhesions) at the abluminal cell surface. Focal contact sites were sharply defined (low radiance levels) in the living cell such that the images could be enhanced, digitized, and isolated from other cellular detail. Sites of focal contact are the principal determinant of cell-substratum adhesion. Measurements of (a) the focal contact area and (b) the closeness of contact (inverse radiance) were used to nominally define the adhesion of a single cell or field of cells, and to record spontaneous and induced changes of cell adhesion in real time. The topography of focal contacts was estimated by calculating separation distances from radiance values using a calibration technique based on interference ring optics. While slightly closer contact was noted between the cell membrane and substratum at or near the center of each focal contact, separation distances throughout the adhesion regions were always < 50 nm. Subtraction of consecutive images revealed continuous spontaneous remodeling of individual focal adhesions in unperturbed cells during periods of < 1 min. Despite extensive remodeling of focal contact sites, however, cell adhesion calculated for an entire cell over extended periods varied by < 10%. When cytoskeletal stability was impaired by exposure to cytochalasin or when cells were exposed to proteolytic enzyme, endothelial adhesion declined rapidly. Such changes were recorded at the level of single cells, groups of cells, and at single focal adhesions. In both unperturbed and manipulated cells, the dynamics of remodeling and cell adhesion characteristics varied greatly between individual sites within the same cell; disappearance of existing sites and appearance of new ones often occurred within minutes while adjacent sites underwent minimal remodelling. Tandem scanning confocal microscopy image analysis of

  20. Real-Time Unsteady Loads Measurements Using Hot-Film Sensors

    NASA Technical Reports Server (NTRS)

    Mangalam, Arun S.; Moes, Timothy R.

    2004-01-01

    Several flight-critical aerodynamic problems such as buffet, flutter, stall, and wing rock are strongly affected or caused by abrupt changes in unsteady aerodynamic loads and moments. Advanced sensing and flow diagnostic techniques have made possible simultaneous identification and tracking, in realtime, of the critical surface, viscosity-related aerodynamic phenomena under both steady and unsteady flight conditions. The wind tunnel study reported here correlates surface hot-film measurements of leading edge stagnation point and separation point, with unsteady aerodynamic loads on a NACA 0015 airfoil. Lift predicted from the correlation model matches lift obtained from pressure sensors for an airfoil undergoing harmonic pitchup and pitchdown motions. An analytical model was developed that demonstrates expected stall trends for pitchup and pitchdown motions. This report demonstrates an ability to obtain unsteady aerodynamic loads in real time, which could lead to advances in air vehicle safety, performance, ride-quality, control, and health management.

  1. Applications of Kalman filtering to real-time trace gas concentration measurements

    NASA Technical Reports Server (NTRS)

    Leleux, D. P.; Claps, R.; Chen, W.; Tittel, F. K.; Harman, T. L.

    2002-01-01

    A Kalman filtering technique is applied to the simultaneous detection of NH3 and CO2 with a diode-laser-based sensor operating at 1.53 micrometers. This technique is developed for improving the sensitivity and precision of trace gas concentration levels based on direct overtone laser absorption spectroscopy in the presence of various sensor noise sources. Filter performance is demonstrated to be adaptive to real-time noise and data statistics. Additionally, filter operation is successfully performed with dynamic ranges differing by three orders of magnitude. Details of Kalman filter theory applied to the acquired spectroscopic data are discussed. The effectiveness of this technique is evaluated by performing NH3 and CO2 concentration measurements and utilizing it to monitor varying ammonia and carbon dioxide levels in a bioreactor for water reprocessing, located at the NASA-Johnson Space Center. Results indicate a sensitivity enhancement of six times, in terms of improved minimum detectable absorption by the gas sensor.

  2. Instrument Development of Real Time Holographic Water Drop Size Measurement System

    SciTech Connect

    Springston, Stephen

    2007-02-09

    BNL participated with multiple correspondences with Physical Optics Corporation (POC) on the design considerations of an airbome instrument. A pod for extemal deployment ofthe POC unit on the DOE Research Aircraft Facility (RAF), an instrumented, Grumman G-1 aircraft was loaned to POC. BNL proposed evaluation flight tests between the POC unit and the BNL Cloud Aerosol Probe Spectrometer (CAPS) as a reference method. BNL's involvement is described in the semi-annual report ofPOC to DOE. Because of unanticipated technical and engineering difficulties, POC was unable to fit their instrument into an aircraft pod. As a result they are now focusing on a ground-based version first. A prototype laboratory version of the Real-Time Holographic Water Drop Size Measurement (WDSM) System has been constructed.

  3. Real-time measurements of endogenous CO production from vascular cells using an ultrasensitive laser sensor

    NASA Technical Reports Server (NTRS)

    Morimoto, Y.; Durante, W.; Lancaster, D. G.; Klattenhoff, J.; Tittel, F. K.

    2001-01-01

    Carbon monoxide (CO) has been implicated as a biological messenger molecule analogous to nitric oxide. A compact gas sensor based on a midinfrared laser absorption spectroscopy was developed for direct and real-time measurement of trace levels (in approximate pmol) of CO release by vascular cells. The midinfrared light is generated by difference frequency mixing of two nearinfrared lasers in a nonlinear optical crystal. A strong infrared absorption line of CO (4.61 microm) is chosen for convenient CO detection without interference from other gas species. The generation of CO from cultured vascular smooth muscle cells was detected every 20 s without any chemical modification to the CO. The sensitivity of the sensor reached 6.9 pmol CO. CO synthesis was measured from untreated control cells (0.25 nmol per 10(7) cells/h), sodium nitroprusside-treated cells (0.29 nmol per 10(7) cells/h), and hemin-treated cells (0.49 nmol per 10(7) cells/h). The sensor also detected decreases in CO production after the addition of the heme oxygenase (HO) inhibitor tin protoporphyrin-IX (from 0.49 to 0.02 nmol per 10(7) cells/h) and increases after the administration of the HO substrate hemin (from 0.27 to 0.64 nmol per 10(7) cells/h). These results demonstrate that midinfrared laser absorption spectroscopy is a useful technique for the noninvasive and real-time detection of trace levels of CO from biological tissues.

  4. Noninvasive real-time measurement of nasal mucociliary clearance in mice by pinhole gamma scintigraphy.

    PubMed

    Hua, Xiaoyang; Zeman, Kirby L; Zhou, Bingqing; Hua, Qingquan; Senior, Brent A; Tilley, Stephen L; Bennett, William D

    2010-01-01

    Mucociliary clearance (MCC) is the key defense mechanism in the upper airways, as the removal of debris-laden mucus in the sinuses completely depends on MCC. So far, how the nasal MCC is regulated remains unknown. Recently, mice deficient in genes encoding the components of MCC apparatus have been generated, which will allow investigators to conduct more in-depth nasal MCC studies. However, the methodology necessary to comprehensively evaluate the nasal MCC in this species is not well established. We therefore developed a novel method to measure nasal MCC in live mice using pinhole gamma camera. Insoluble radiolabeled particles were delivered into the noses of lightly anesthetized mice. The nasal clearance of these particles was measured continuously in a real-time manner. The effect of three different anesthetics-avertin, pentobarbital, and isoflurane-on nasal MCC was also determined. In mice anesthetized by 1.1% isoflurane, radiolabeled particles were immediately moved into the oropharynx, which was significantly accelerated by the treatment of hypertonic but not isotonic saline. According to the clearance rate, the mouse nasal MCC presented two distinct phases: a rapid phase and a slow phase. In addition, we found that isoflurane had a very small inhibitory effect on nasal MCC vs. both avertin and pentobarbital. This was further supported by its dose response. Collectively, we have developed a noninvasive method to monitor the real-time nasal MCC in live mice under physiological conditions. It provides more comprehensive evaluation on nasal MCC rather than assessing a single component of the MCC apparatus in isolation.

  5. In situ method for real time measurement of dielectric film thickness in plasmas

    SciTech Connect

    Jang, Sung-Ho; Kim, Gun-Ho; Chung, Chin-Wook

    2010-01-15

    An in situ thickness measurement method of dielectric films (dual frequency method) was developed, and the thicknesses were measured in an inductively coupled plasma. This method uses a small ac bias voltage with two frequencies for thickness measurement. The dielectric thickness is obtained from measuring the amplitudes of the two frequency ac currents through a sensor, as well as using an equivalent circuit model describing impedance of the dielectric film and the plasma sheath. In the experiment, the thicknesses of Al{sub 2}O{sub 3} film could be accurately measured in real time. To check the measurement reliability, the dual frequency method was compared with reflection spectrophotometry as a technique for optical thickness diagnostics. It was found that the dual frequency method agrees closely with reflection spectrophotometry at various rf powers and pressures. In addition, this method is very simple and can be installed anywhere in plasma reactors, in contrast with optical methods; therefore, it is expected to be applied to in situ surface diagnostics for various processing plasmas.

  6. Analysis of atmospheric aerosols by PIXE: the importance of real time and complementary measurements

    NASA Astrophysics Data System (ADS)

    Artaxo, Paulo; Castanho, Andrea D.; Yamasoe, Marcia A.; Martins, José Vanderlei; Longo, Karla M.

    1999-04-01

    Particle-Induced X-ray Emission (PIXE) has been used for more than 30 yr in many urban and background air pollution studies. The technique has certainly contributed to the understanding of source-receptor relationship for aerosol particles as well as to aerosol physics and chemistry. In the last few years, where aerosol issues were strongly linked to global climate change through the relationship between aerosol and atmospheric radiation points to new challenges in atmospheric sciences, where PIXE could play an important role. Also the recognition for the inter-relationship between aerosol and liquid and gas phases in the atmosphere makes important to integrate PIXE aerosol analysis with other complementary measurements. The use of Nephelometers and Aethalometers to measure scattering and absorption of radiation by aerosol particles can be done in parallel with particle filter collection for PIXE analysis. Parallel measurements of trace gases using traditional monitors as well as with new techniques such as Differential Optical Absorption Spectroscopy (DOAS) that can provide concentration of O 3, SO 2, NO 3, NO 2, HCHO, HNO 3, Benzene, Toluene, and Xylene, is also important for both urban and remote aerosol studies. They provide information that allows a much richer interpretation of PIXE data. Recently developed instruments that provide real time aerosol data such as the Tapered Element Oscillating Microbalance (TEOM) PM 10 monitor and automatic real time organic and elemental carbon analyzers provide extremely useful data to complement PIXE aerosol analysis. The concentrations of trace elements measured by PIXE comprise only 10-30% of the aerosol mass, leaving the organic aerosol characterization and measurement with an important role. The aerosol source apportionment provided by PIXE analysis can be extended with other aerosol measurements such as scattering and absorption, estimating for example, the radiative impact of each discriminated aerosol source. The

  7. Best Practice for Rainfall Measurement, Torrential Flood Monitoring and Real Time Alerting System in Serbia

    NASA Astrophysics Data System (ADS)

    Stefanovic, Milutin; Milojevic, Mileta; Zlatanovic, Nikola

    2014-05-01

    Serbia occupies 88.000 km2 and its confined zone menaced with torrent flood occupies 50.000km2. Floods on large rivers and torrents are the most frequent natural disasters in Serbia. This is the result of a geographic position and relief of Serbia. Therefore, defense from these natural disasters has been institutionalized since the 19th century. Through its specialized bodies and public companies, the State organized defense from floods on large rivers and protection of international and other main roads. The Topčiderska River is one of a number of rivers in Serbia that is a threat to both urban and rural environments. In this text, general characteristics of this river will be illustrated, as well as the historical natural hazards that have occurred in the part of Belgrade near Topčiderska River. Belgrade is the capital of Serbia, its political, administrative and financial center, which means that there are significant financial capacities and human resources for investments in all sectors, and specially in the water resources sector. Along the Topčiderska catchment there are many industrial, traffic and residential structures that are in danger of floods and flood protection is more difficult with rapid high flows. The goal is to use monitoring on the Topčiderska River basin to set up a modern system for monitoring in real time and forecast of torrential floods. This paper represents a system of remote detection and monitoring of torrential floods and rain measurements in real time on Topciderka river and ready for a quick response.

  8. Real-time measurement of materials properties at high temperatures by laser produced plasmas

    NASA Technical Reports Server (NTRS)

    Kim, Yong W.

    1990-01-01

    Determination of elemental composition and thermophysical properties of materials at high temperatures, as visualized in the context of containerless materials processing in a microgravity environment, presents a variety of unusual requirements owing to the thermal hazards and interferences from electromagnetic control fields. In addition, such information is intended for process control applications and thus the measurements must be real time in nature. A new technique is described which was developed for real time, in-situ determination of the elemental composition of molten metallic alloys such as specialty steel. The technique is based on time-resolved spectroscopy of a laser produced plasma (LPP) plume resulting from the interaction of a giant laser pulse with a material target. The sensitivity and precision were demonstrated to be comparable to, or better than, the conventional methods of analysis which are applicable only to post-mortem specimens sampled from a molten metal pool. The LPP technique can be applied widely to other materials composition analysis applications. The LPP technique is extremely information rich and therefore provides opportunities for extracting other physical properties in addition to the materials composition. The case in point is that it is possible to determine thermophysical properties of the target materials at high temperatures by monitoring generation and transport of acoustic pulses as well as a number of other fluid-dynamic processes triggered by the LPP event. By manipulation of the scaling properties of the laser-matter interaction, many different kinds of flow events, ranging from shock waves to surface waves to flow induced instabilities, can be generated in a controllable manner. Time-resolved detection of these events can lead to such thermophysical quantities as volume and shear viscosities, thermal conductivity, specific heat, mass density, and others.

  9. Infrared tomography: data distribution system and software development for real-time velocity measurement.

    PubMed

    Abdul Rahim, Ruzairi; Pang, Jon Fea; Chan, Kok San; Leong, Lai Chen; Sulaiman, S; Abdul Manaf, M S

    2007-04-01

    The data distribution system of this project is divided into two types, which are a Two-PC Image Reconstruction System and a Two-PC Velocity Measurement System. Each data distribution system is investigated to see whether the results' refreshing rate of the corresponding measurement can be greater than the rate obtained by using a single computer in the same measurement system for each application. Each system has its own flow control protocol for controlling how data is distributed within the system in order to speed up the data processing time. This can be done if two PCs work in parallel. The challenge of this project is to define the data flow process and critical timing during data packaging, transferring and extracting in between PCs. If a single computer is used as a data processing unit, a longer time is needed to produce a measurement result. This insufficient real-time result will cause problems in a feedback control process when applying the system in industrial plants. To increase the refreshing rate of the measurement result, an investigation on a data distribution system is performed to replace the existing data processing unit.

  10. Real-Time Measurement of Width and Height of Weld Beads in GMAW Processes.

    PubMed

    Pinto-Lopera, Jesús Emilio; S T Motta, José Mauricio; Absi Alfaro, Sadek Crisostomo

    2016-09-15

    Associated to the weld quality, the weld bead geometry is one of the most important parameters in welding processes. It is a significant requirement in a welding project, especially in automatic welding systems where a specific width, height, or penetration of weld bead is needed. This paper presents a novel technique for real-time measuring of the width and height of weld beads in gas metal arc welding (GMAW) using a single high-speed camera and a long-pass optical filter in a passive vision system. The measuring method is based on digital image processing techniques and the image calibration process is based on projective transformations. The measurement process takes less than 3 milliseconds per image, which allows a transfer rate of more than 300 frames per second. The proposed methodology can be used in any metal transfer mode of a gas metal arc welding process and does not have occlusion problems. The responses of the measurement system, presented here, are in a good agreement with off-line data collected by a common laser-based 3D scanner. Each measurement is compare using a statistical Welch's t-test of the null hypothesis, which, in any case, does not exceed the threshold of significance level α = 0.01, validating the results and the performance of the proposed vision system.

  11. Real-Time Measurement of Width and Height of Weld Beads in GMAW Processes

    PubMed Central

    Pinto-Lopera, Jesús Emilio; S. T. Motta, José Mauricio; Absi Alfaro, Sadek Crisostomo

    2016-01-01

    Associated to the weld quality, the weld bead geometry is one of the most important parameters in welding processes. It is a significant requirement in a welding project, especially in automatic welding systems where a specific width, height, or penetration of weld bead is needed. This paper presents a novel technique for real-time measuring of the width and height of weld beads in gas metal arc welding (GMAW) using a single high-speed camera and a long-pass optical filter in a passive vision system. The measuring method is based on digital image processing techniques and the image calibration process is based on projective transformations. The measurement process takes less than 3 milliseconds per image, which allows a transfer rate of more than 300 frames per second. The proposed methodology can be used in any metal transfer mode of a gas metal arc welding process and does not have occlusion problems. The responses of the measurement system, presented here, are in a good agreement with off-line data collected by a common laser-based 3D scanner. Each measurement is compare using a statistical Welch’s t-test of the null hypothesis, which, in any case, does not exceed the threshold of significance level α = 0.01, validating the results and the performance of the proposed vision system. PMID:27649198

  12. Real-Time Measurement of Width and Height of Weld Beads in GMAW Processes.

    PubMed

    Pinto-Lopera, Jesús Emilio; S T Motta, José Mauricio; Absi Alfaro, Sadek Crisostomo

    2016-01-01

    Associated to the weld quality, the weld bead geometry is one of the most important parameters in welding processes. It is a significant requirement in a welding project, especially in automatic welding systems where a specific width, height, or penetration of weld bead is needed. This paper presents a novel technique for real-time measuring of the width and height of weld beads in gas metal arc welding (GMAW) using a single high-speed camera and a long-pass optical filter in a passive vision system. The measuring method is based on digital image processing techniques and the image calibration process is based on projective transformations. The measurement process takes less than 3 milliseconds per image, which allows a transfer rate of more than 300 frames per second. The proposed methodology can be used in any metal transfer mode of a gas metal arc welding process and does not have occlusion problems. The responses of the measurement system, presented here, are in a good agreement with off-line data collected by a common laser-based 3D scanner. Each measurement is compare using a statistical Welch's t-test of the null hypothesis, which, in any case, does not exceed the threshold of significance level α = 0.01, validating the results and the performance of the proposed vision system. PMID:27649198

  13. Visualization of feline calicivirus replication in real-time with recombinant viruses engineered to express fluorescent reporter proteins.

    PubMed

    Abente, Eugenio J; Sosnovtsev, Stanislav V; Bok, Karin; Green, Kim Y

    2010-04-25

    Caliciviruses are non-enveloped, icosahedral viruses with a single-stranded, positive sense RNA genome. Transposon-mediated insertional mutagenesis was used to insert a transprimer sequence into random sites of an infectious full-length cDNA clone of the feline calicivirus (FCV) genome. A site in the LC gene (encoding the capsid leader protein) of the FCV genome was identified that could tolerate foreign insertions, and two viable recombinant FCV variants expressing LC fused either to AcGFP, or DsRedFP were recovered. The effects of the insertions on LC processing, RNA replication, and stability of the viral genome were analyzed, and the progression of a calicivirus single infection and co-infection were captured by real-time imaging fluorescent microscopy. The ability to engineer viable recombinant caliciviruses expressing foreign markers enables new approaches to investigate virus and host cell interactions, as well as studies of viral recombination, one of the driving forces of calicivirus evolution. PMID:20137802

  14. Real-time fluorescent quantitative immuno-PCR method for determination of fluoranthene in water samples with a molecular beacon.

    PubMed

    Ye, Qiyan; Zhuang, Huisheng; Zhou, Chun; Wang, Qiong'e

    2010-01-01

    A reliable and sensitive competitive real-time fluorescent quantitative immuno-PCR (RTFQ-IPCR) assay using a molecular beacon was developed for the determination of trace fluoranthene (FL) in the environment. Under optimized assay conditions, FL can be determined in the concentration range from 1 fg/mL to 100 ng/mL, withy = 0.194x + 7.859, and a correlation coefficient of 0.967 was identified, with a detection limit of 0.6 fg/mL. Environmental water samples were successfully analyzed, recovery was between 90% and 116%, with intra-day relative standard deviation (RSD) of 6.7%-12.8% and inter-day RSD of 8.4%-15.2%. The results obtained from RTFQ-IPCR were confirmed by ELISA, showing good accuracy and suitability to analyze FL in field samples. As a highly sensitive method, the molecular beacon-based RTFQ-IPCR is acceptable and promising for providing reliable test results to make environmental decisions.

  15. Enumeration of Archaea and Bacteria in seafloor basalt using real-time quantitative PCR and fluorescence microscopy.

    PubMed

    Einen, Jørn; Thorseth, Ingunn H; Ovreås, Lise

    2008-05-01

    A SYBR Green real-time quantitative PCR (Q-PCR) assay for the detection and quantification of Bacteria and Archaea present in the glassy rind of seafloor basalts of different ages and water depths is presented. Two sets of domain-specific primers were designed and validated for specific detection and quantification of bacterial and archaeal 16S rRNA genes in DNA extracted from basaltic glass. Total cell numbers were also estimated by fluorescence microscopy analysis of SYBR Gold-stained samples. The results from the two different approaches were concurrent, and Q-PCR results showed that the total number of cells present in basalts was in the range from 6 x 10(5) to 4 x 10(6) cells g(-1) basaltic glass. Further, it was demonstrated that these cells were almost exclusively from the domain Bacteria. When applying the same methods on samples of different ages (22 years-0.1 Ma) and water depths (139-3390 mbsl), no significant differences in cell concentrations or in the relative abundance of Archaea and Bacteria were detected.

  16. Continuous-flow water sampler for real-time isotopic water measurements

    NASA Astrophysics Data System (ADS)

    Carter, J.; Dennis, K.

    2013-12-01

    Measuring the stable isotopes of liquid water (δ18O and δD) is a tool familiar to many Earth scientists, but most current techniques require discrete sampling. For example, isotope ratio mass spectrometry requires the collection of aliquots of water that are then converted to CO2, CO or H2 for analysis. Similarly, laser-based techniques, such as Cavity Ring-Down Spectroscopy (CRDS) convert discrete samples (typically < 2μL) of liquid water to water vapor using a flash vaporization process. By requiring the use of discrete samples fine-scale spatial and temporal studies of changes in δ18O and δD are limited. Here we present a continuous-flow water sampler that will enable scientists to probe isotopic changes in real-time, with applications including, but not limited to, quantification of the 'amount effect' (Dansgaard, 1964) during an individual precipitation event or storm track, real-time mixing of water in river systems, and shipboard continuous water measurements (Munksgaard et al., 2012). Due to the inherent ability of CRDS to measure a continuous flow of water vapor it is an ideal candidate for interfacing with a continuous water sampling system. Here we present results from the first commercially available continuous-flow water sampler, developed by engineers at Picarro. This peripheral device is compatible with Picarro CRDS isotopic water analyzers, allowing real-time, continuous isotopic measurements of liquid water. The new device, which expands upon the design of Munskgaard et al. (2011), utilizes expanded polytetrafluoroethylene (ePTFE) membrane technology to continuously generate gas-phase water, while liquid water is pumped through the system. The water vapor subsequently travels to the CRDS analyzer where the isotopic ratios are measured and recorded. The generation of water vapor using membrane technology is sensitive to environmental conditions, which if not actively control, lead to sustainable experimental noise and drift. Consequently, our

  17. Real-time soil compaction monitoring through pad strain measurements: modeling to inform strain gage placement

    NASA Astrophysics Data System (ADS)

    Kimmel, Shawn C.; Mooney, Michael A.

    2011-04-01

    Soil compaction monitoring is critical to earthwork projects, including roadways, earth dams, and levees. Current methods require a halt of production, and provide at best sparse coverage. A system is proposed for static pad foot soil compaction to provide real-time feedback at higher spatial resolutions through machine integrated sensors. The system is composed of pad sensors that measure total normal force and contact stress distribution (CSD), laser sensors that measure soil deflection, and GPS to spatially reference measurements. By combining these measurements, soil stiffness and potentially modulus can be determined. This paper discusses the development of the force and CSD sensing pad. The concept is to instrument individual pads with strain gages to determine loading conditions. Modeling is used to inform strain gage positioning through pad strain behavior analysis of different simulated soil conditions. The finite element analysis (FEA) of a Caterpillar pad is discussed, including formulation and rationale for the various model parameters. The loading parameters are explained, including the range of force magnitudes experienced throughout compaction and the CSD elicited by various soils. The results of this analysis are presented, and show that pad strain is sensitive to both force magnitude and CSD. Specific strain trends are identified in the sidewall and bottom face of the pad which are particularly sensitive to the loading variables. Strain gage placements are proposed that capture the identified trends, thereby providing definitive information on total normal force and CSD.

  18. In-Line Capacitance Sensor for Real-Time Water Absorption Measurements

    NASA Technical Reports Server (NTRS)

    Nurge, Mark A.; Perusich, Stephen A.

    2010-01-01

    A capacitance/dielectric sensor was designed, constructed, and used to measure in real time the in-situ water concentration in a desiccant water bed. Measurements were carried out with two experimental setups: (1) passing nitrogen through a humidity generator and allowing the gas stream to become saturated at a measured temperature and pressure, and (2) injecting water via a syringe pump into a nitrogen stream. Both water vapor generating devices were attached to a downstream vertically-mounted water capture bed filled with 19.5 g of Moisture Gone desiccant. The sensor consisted of two electrodes: (1) a 1/8" dia stainless steel rod placed in the middle of the bed and (2) the outer shell of the stainless steel bed concentric with the rod. All phases of the water capture process (background, heating, absorption, desorption, and cooling) were monitored with capacitance. The measured capacitance was found to vary linearly with the water content in the bed at frequencies above 100 kHz indicating dipolar motion dominated the signal; below this frequency, ionic motion caused nonlinearities in the water concentration/capacitance relationship. The desiccant exhibited a dielectric relaxation whose activation energy was lowered upon addition of water indicating either a less hindered rotational motion or crystal reorientation.

  19. Ultrafast NMR T1 Relaxation Measurements: Probing Molecular Properties in Real Time

    PubMed Central

    Smith, Pieter E. S.; Donovan, Kevin J.; Szekely, Or; Baias, Maria; Frydman, Lucio

    2016-01-01

    The longitudinal relaxation properties of NMR active nuclei carry useful information about the site-specific chemical environments and about the mobility of molecular fragments. Molecular mobility is in turn a key parameter reporting both on stable properties like size, as well as on dynamic ones such as transient interactions and irreversible aggregation. In order to fully investigate the latter, a fast sampling of the relaxation parameters of transiently formed molecular species may be needed. Nevertheless, the acquisition of longitudinal relaxation data is typically slow, being limited by the requirement that the time for which the nucleus relaxes be varied incrementally until a complete build-up curve is generated. Recently a number of single-shot inversion recovery methods have been developed capable of alleviating this need; still, these may be challenged by either spectral resolution restrictions or when coping with very fast relaxing nuclei. Here we present a new experiment to measure the T1s of multiple nuclear spins that experience fast longitudinal relaxation, while retaining full high-resolution chemical shift information. Good agreement is observed between T1s measured with conventional means and T1s measured using the new technique. The method is applied to the real time investigation of the reaction between D-xylose and sodium borate, which is in turn elucidated with the aid of ancillary ultrafast and conventional 2D TOCSY measurements. PMID:23878001

  20. Application of the Nordtest method for "real-time" uncertainty estimation of on-line field measurement.

    PubMed

    Näykki, Teemu; Virtanen, Atte; Kaukonen, Lari; Magnusson, Bertil; Väisänen, Tero; Leito, Ivo

    2015-10-01

    Field sensor measurements are becoming more common for environmental monitoring. Solutions for enhancing reliability, i.e. knowledge of the measurement uncertainty of field measurements, are urgently needed. Real-time estimations of measurement uncertainty for field measurement have not previously been published, and in this paper, a novel approach to the automated turbidity measuring system with an application for "real-time" uncertainty estimation is outlined based on the Nordtest handbook's measurement uncertainty estimation principles. The term real-time is written in quotation marks, since the calculation of the uncertainty is carried out using a set of past measurement results. There are two main requirements for the estimation of real-time measurement uncertainty of online field measurement described in this paper: (1) setting up an automated measuring system that can be (preferably remotely) controlled which measures the samples (water to be investigated as well as synthetic control samples) the way the user has programmed it and stores the results in a database, (2) setting up automated data processing (software) where the measurement uncertainty is calculated from the data produced by the automated measuring system. When control samples with a known value or concentration are measured regularly, any instrumental drift can be detected. An additional benefit is that small drift can be taken into account (in real-time) as a bias value in the measurement uncertainty calculation, and if the drift is high, the measurement results of the control samples can be used for real-time recalibration of the measuring device. The procedure described in this paper is not restricted to turbidity measurements, but it will enable measurement uncertainty estimation for any kind of automated measuring system that performs sequential measurements of routine samples and control samples/reference materials in a similar way as described in this paper.

  1. Application of the Nordtest method for "real-time" uncertainty estimation of on-line field measurement.

    PubMed

    Näykki, Teemu; Virtanen, Atte; Kaukonen, Lari; Magnusson, Bertil; Väisänen, Tero; Leito, Ivo

    2015-10-01

    Field sensor measurements are becoming more common for environmental monitoring. Solutions for enhancing reliability, i.e. knowledge of the measurement uncertainty of field measurements, are urgently needed. Real-time estimations of measurement uncertainty for field measurement have not previously been published, and in this paper, a novel approach to the automated turbidity measuring system with an application for "real-time" uncertainty estimation is outlined based on the Nordtest handbook's measurement uncertainty estimation principles. The term real-time is written in quotation marks, since the calculation of the uncertainty is carried out using a set of past measurement results. There are two main requirements for the estimation of real-time measurement uncertainty of online field measurement described in this paper: (1) setting up an automated measuring system that can be (preferably remotely) controlled which measures the samples (water to be investigated as well as synthetic control samples) the way the user has programmed it and stores the results in a database, (2) setting up automated data processing (software) where the measurement uncertainty is calculated from the data produced by the automated measuring system. When control samples with a known value or concentration are measured regularly, any instrumental drift can be detected. An additional benefit is that small drift can be taken into account (in real-time) as a bias value in the measurement uncertainty calculation, and if the drift is high, the measurement results of the control samples can be used for real-time recalibration of the measuring device. The procedure described in this paper is not restricted to turbidity measurements, but it will enable measurement uncertainty estimation for any kind of automated measuring system that performs sequential measurements of routine samples and control samples/reference materials in a similar way as described in this paper. PMID:26377833

  2. A cavity ring-down spectroscopy sensor for real-time Hall thruster erosion measurements.

    PubMed

    Lee, B C; Huang, W; Tao, L; Yamamoto, N; Gallimore, A D; Yalin, A P

    2014-05-01

    A continuous-wave cavity ring-down spectroscopy sensor for real-time measurements of sputtered boron from Hall thrusters has been developed. The sensor uses a continuous-wave frequency-quadrupled diode laser at 250 nm to probe ground state atomic boron sputtered from the boron nitride insulating channel. Validation results from a controlled setup using an ion beam and target showed good agreement with a simple finite-element model. Application of the sensor for measurements of two Hall thrusters, the H6 and SPT-70, is described. The H6 was tested at power levels ranging from 1.5 to 10 kW. Peak boron densities of 10 ± 2 × 10(14) m(-3) were measured in the thruster plume, and the estimated eroded channel volume agreed within a factor of 2 of profilometry. The SPT-70 was tested at 600 and 660 W, yielding peak boron densities of 7.2 ± 1.1 × 10(14) m(-3), and the estimated erosion rate agreed within ~20% of profilometry. Technical challenges associated with operating a high-finesse cavity in the presence of energetic plasma are also discussed.

  3. A cavity ring-down spectroscopy sensor for real-time Hall thruster erosion measurements

    SciTech Connect

    Lee, B. C.; Huang, W.; Tao, L.; Yamamoto, N.; Yalin, A. P.; Gallimore, A. D.

    2014-05-15

    A continuous-wave cavity ring-down spectroscopy sensor for real-time measurements of sputtered boron from Hall thrusters has been developed. The sensor uses a continuous-wave frequency-quadrupled diode laser at 250 nm to probe ground state atomic boron sputtered from the boron nitride insulating channel. Validation results from a controlled setup using an ion beam and target showed good agreement with a simple finite-element model. Application of the sensor for measurements of two Hall thrusters, the H6 and SPT-70, is described. The H6 was tested at power levels ranging from 1.5 to 10 kW. Peak boron densities of 10 ± 2 × 10{sup 14} m{sup −3} were measured in the thruster plume, and the estimated eroded channel volume agreed within a factor of 2 of profilometry. The SPT-70 was tested at 600 and 660 W, yielding peak boron densities of 7.2 ± 1.1 × 10{sup 14} m{sup −3}, and the estimated erosion rate agreed within ∼20% of profilometry. Technical challenges associated with operating a high-finesse cavity in the presence of energetic plasma are also discussed.

  4. Wearable Biomedical Measurement Systems for Assessment of Mental Stress of Combatants in Real Time

    PubMed Central

    Seoane, Fernando; Mohino-Herranz, Inmaculada; Ferreira, Javier; Alvarez, Lorena; Buendia, Ruben; Ayllón, David; Llerena, Cosme; Gil-Pita, Roberto

    2014-01-01

    The Spanish Ministry of Defense, through its Future Combatant program, has sought to develop technology aids with the aim of extending combatants' operational capabilities. Within this framework the ATREC project funded by the “Coincidente” program aims at analyzing diverse biometrics to assess by real time monitoring the stress levels of combatants. This project combines multidisciplinary disciplines and fields, including wearable instrumentation, textile technology, signal processing, pattern recognition and psychological analysis of the obtained information. In this work the ATREC project is described, including the different execution phases, the wearable biomedical measurement systems, the experimental setup, the biomedical signal analysis and speech processing performed. The preliminary results obtained from the data analysis collected during the first phase of the project are presented, indicating the good classification performance exhibited when using features obtained from electrocardiographic recordings and electrical bioimpedance measurements from the thorax. These results suggest that cardiac and respiration activity offer better biomarkers for assessment of stress than speech, galvanic skin response or skin temperature when recorded with wearable biomedical measurement systems. PMID:24759113

  5. Real-time Monitoring of Dissolved Organic Matter (DOM) Amount, Composition, Source and Reactivity Using Fluorescence Spectroscopy: Applications for Drinking Water Quality

    NASA Astrophysics Data System (ADS)

    Kraus, T. E.; Saraceno, J.; Downing, B. D.; Goldman, J. H.; Carpenter, K. D.; McGhee, G.; Bergamaschi, B. A.

    2010-12-01

    There is growing interest in the use of in situ, continuous fluorescence spectroscopy as a proxy for dissolved organic carbon (DOC) concentration. To date, in situ fluorometers designed to estimate DOC concentration are single wavelength sensors centered near the excitation/emission (ex/em) pair 370/460 nm. Additional information about dissolved organic matter (DOM) composition has only been obtainable from benchtop fluorometers that provide multi-spectral data. Changes in DOM composition are important as they provide insight into DOM source (e.g. terrestrial, algal, wastewater) and reactivity. Recent advances in sensor technology make it possible to build in situ instruments for measuring multiple fluorescence ex/em pairs, including pairs with excitations in the lower “deep UV” region (e.g. 270/340 nm) associated with fresher and more labile DOM pools. The deployment of multi-spectral sensors will provide real-time continuous data showing not only changes in DOM concentration, but also changes in composition. This information is particularly pertinent to drinking water utilities because a fraction of DOM reacts upon disinfection (e.g. chlorination and ozonation) to form toxic disinfection byproducts (DBPs) which are regulated by the EPA. To test this application, we designed a multi-wavelength sensor that will measure three ex/em pairs (370/470, 370/520 and 270/340 nm) for deployment near a drinking water intake on the Clackamas River in Oregon. Comparison of the continuous data with discrete sample data indicates these tools can track both quantitative and qualitative changes in the DOM pool. The availability of this type of continuous data in real time could enable utilities to minimize the formation of DBPs by continuously optimizing treatment plant operations in response to changes in source water. In addition, collection of high-frequency data will improve understanding of watershed DOM dynamics and help identify sources of DOM and DBP precursors, thereby

  6. Real-time radiography

    SciTech Connect

    Bossi, R.H.; Oien, C.T.

    1981-02-26

    Real-time radiography is used for imaging both dynamic events and static objects. Fluorescent screens play an important role in converting radiation to light, which is then observed directly or intensified and detected. The radiographic parameters for real-time radiography are similar to conventional film radiography with special emphasis on statistics and magnification. Direct-viewing fluoroscopy uses the human eye as a detector of fluorescent screen light or the light from an intensifier. Remote-viewing systems replace the human observer with a television camera. The remote-viewing systems have many advantages over the direct-viewing conditions such as safety, image enhancement, and the capability to produce permanent records. This report reviews real-time imaging system parameters and components.

  7. Real-time Seismic Amplitude Measurement (RSAM): a volcano monitoring and prediction tool

    USGS Publications Warehouse

    Endo, E.T.; Murray, T.

    1991-01-01

    Seismicity is one of the most commonly monitored phenomena used to determine the state of a volcano and for the prediction of volcanic eruptions. Although several real-time earthquake-detection and data acquisition systems exist, few continuously measure seismic amplitude in circumstances where individual events are difficult to recognize or where volcanic tremor is prevalent. Analog seismic records provide a quick visual overview of activity; however, continuous rapid quantitative analysis to define the intensity of seismic activity for the purpose of predicing volcanic eruptions is not always possible because of clipping that results from the limited dynamic range of analog recorders. At the Cascades Volcano Observatory, an inexpensive 8-bit analog-to-digital system controlled by a laptop computer is used to provide 1-min average-amplitude information from eight telemetered seismic stations. The absolute voltage level for each station is digitized, averaged, and appended in near real-time to a data file on a multiuser computer system. Raw realtime seismic amplitude measurement (RSAM) data or transformed RSAM data are then plotted on a common time base with other available volcano-monitoring information such as tilt. Changes in earthquake activity associated with dome-building episodes, weather, and instrumental difficulties are recognized as distinct patterns in the RSAM data set. RSAM data for domebuilding episodes gradually develop into exponential increases that terminate just before the time of magma extrusion. Mount St. Helens crater earthquakes show up as isolated spikes on amplitude plots for crater seismic stations but seldom for more distant stations. Weather-related noise shows up as low-level, long-term disturbances on all seismic stations, regardless of distance from the volcano. Implemented in mid-1985, the RSAM system has proved valuable in providing up-to-date information on seismic activity for three Mount St. Helens eruptive episodes from 1985 to

  8. Real-time frequency-domain fiber optic sensor for intra-arterial blood oxygen measurements

    NASA Astrophysics Data System (ADS)

    Alcala, J. R.; Scott, Ian L.; Parker, Jennifer W.; Atwater, Beauford W.; Yu, Clement; Fischer, Russell; Bellingrath, K.

    1993-05-01

    A real time frequency domain phosphorimeter capable of measuring precise and accurate excited state lifetimes for determining oxygen is described. This frequency domain instrument does not make use of cross correlation techniques traditionally used in frequency domain fluorometers. Instead, the electrical signal from the detector is filtered to contain only the first several harmonics. This filtered signal is then sampled and averaged over a few thousand cycles. The absolute phase and absolute modulation of each sampled harmonic of the excitation and of the luminescence is computed by employing fast Fourier transform algorithms. The phase delay and the modulation ratio is then calculated at each harmonic frequency. A least squares fit is performed in the frequency domain to obtain the lifetimes of discrete exponentials. Oxygen concentrations are computed from these lifetimes. Prototypes based on these techniques were built employing commercially available components. Results from measurements in saline solution and in the arterial blood of dogs show that oxygen concentrations can be determined reproducibly. The system drift is less than 1% in over 100 hours of continuous operation. The performance of fiber optic sensors was evaluated in dogs over a period of 10 hours. The sensors tracked changes in arterial oxygen tension over the course of the experiment without instabilities. The overall response of the system was about 90 seconds. The update time was 3 seconds.

  9. In-Situ Real Time Measurements of Molten Glass Properties, Final Report

    SciTech Connect

    Robert De Saro; Joe Craparo

    2007-12-16

    Energy Research Company (ERCo) of Staten Island, NY has developed a sensor capable of measuring in situ and in real time, both the elemental composition and the temperature of molten glass. A prototype sensor has been designed, constructed and tested in ERCo's laboratory. The sensor was used to collect atomic emission spectra from molten fiberglass via Laser Induced Breakdown Spectroscopy (LIBS). From these spectra, we were able to readily identify all elements of interest (B, Si, Ca, Fe, Mg, Na, Sr, Al). The high signal-to-background signals achieved suggest that data from the sensor can be used to determine elemental concentrations, either through calibration curves or using ERCo's calibrationless method. ERCo's technology fits in well with DOE's Glass Industry Technology Roadmap which emphasizes the need for accurate process and feedstock sensors. Listed first under technological barriers to increased production efficiency is the 'Inability to accurately measure and control the production process'. A large-scale glass melting furnace, developed by SenCer Inc. of Penn Yan, NY was installed in ERCo's laboratory to ensure that a large enough quantity of glass could be melted and held at temperature in the presence of the water-cooled laser sensor without solidifying the glass.

  10. Real-time measurement of sodium chloride in individual aerosol particles by mass spectrometry

    NASA Technical Reports Server (NTRS)

    Sinha, M. P.; Friedlander, S. K.

    1985-01-01

    The method of particle analysis by mass spectrometry has been applied to the quantitative measurement of sodium chloride in individual particles on a real-time basis. Particles of known masses are individually introduced, in the form of a beam, into a miniature Knudsen cell oven (1600 K). The oven is fabricated from rhenium metal sheet (0.018 mm thick) and is situated in the ion source of a quadrupole mass spectrometer. A particle once inside the oven is trapped and completely volatilized; this overcomes the problem of partial volatilization due to particles bouncing from the filament surface. Individual particles are thermally volatilized and ionized inside the rhenium oven, and produce discrete sodium ion pulses whose intensities are measured with the quadrupole mass spectrometer. An ion pulse width of several milliseconds (4-12 ms) is found for particles in the mass range 1.3 x 10 to the -13th to 5.4 x 10 to the -11th g. The sodium ion intensity is found to be proportional to the particle mass to the 0.86-power. The intensity distribution for monodisperse aerosol particles possesses a geometric standard deviation of 1.09, showing that the method can be used for the determination of the mass distribution function with good resolution in a polydisperse aerosol.

  11. DEVELOPMENT OF AN ON-LINE, REAL-TIME ALPHA RADIATION MEASURING INSTRUMENT FOR LIQUID STREAMS

    SciTech Connect

    Unknown

    1999-03-14

    The US Department of Energy (DOE) has expressed a need for an on-line, real-time instrument for assaying alpha-emitting radionuclides (uranium and the transuranics) in effluent waters leaving DOE sites to ensure compliance with regulatory limits. Due to the short range of alpha particles in water ({approximately}40 Im), it is necessary now to intermittently collect samples of water and send them to a central laboratory for analysis. A lengthy and costly procedure is used to separate and measure the radionuclides from each sample. Large variations in radionuclide concentrations in the water may go undetected due to the sporadic sampling. Even when detected, the reading may not be representative of the actual stream concentration. To address these issues, the Advanced Technologies Group of Thermo Power Corporation (a Thermo Electron company) is developing a real-time, field-deployable alpha monitor based on a solid-state silicon wafer semiconductor (US Patent 5,652,013 and pending, assigned to the US Department of Energy). The Thermo Water Alpha Monitor will serve to monitor effluent water streams (Subsurface Contaminants Focus Area) and will be suitable for process control of remediation as well as decontamination and decommissioning (D and D) operations, such as monitoring scrubber or rinse water radioactivity levels (Mixed Waste, Plutonium, and D and D Focus Area). It would be applicable for assaying other liquids, such as oil, or solids after proper preconditioning. Rapid isotopic alpha air monitoring is also possible using this technology. This report details the program's accomplishments to date. Most significantly, the Alpha Monitoring Instrument was successfully field demonstrated on water 100X below the Environmental Protection Agency's proposed safe drinking water limit--down to under 1 pCi/1. During the Field Test, the Alpha Monitoring Instrument successfully analyzed isotopic uranium levels on a total of five different surface water, process water, and

  12. DEVELOPMENT OF AN ON-LINE, REAL-TIME ALPHA RADIATION MEASURING INSTRUMENT FOR LIQUID STREAMS

    SciTech Connect

    1996-11-22

    The Department of Energy (DOE) has expressed a need for an on-line, real-time instrument for assaying alpha-emitting radionuclides (uranium and the transuranics) in effluent waters leaving DOE sites to ensure compliance with regulatory limits. Due to the short range of alpha particles in water ({approximately}40 Tm), it is necessary now to intermittently collect samples of water and send them to a central laboratory for analysis. A lengthy and costly procedure is used to separate and measure the radionuclides from each sample. Large variations in radionuclide concentrations in the water may go undetected due to the sporadic sampling. Even when detected, the reading may not be representative of the actual stream concentration. To address these issues, Tecogen, a division of Thermo Power Corporation, a Thermo Electron company, is developing a real-time, field-deployable, alpha monitor based on a solid-state silicon wafer semiconductor (patent pending, to be assigned to the Department of Energy). The Thermo Alpha Monitor (TAM) will serve to monitor effluent water streams (Subsurface Contaminants Focus Area) and will be suitable for process control of remediation as well as decontamination and decommissioning operations, such as monitoring scrubber or rinse water radioactivity levels (Mixed Waste Focus Area and D&D Focus Area). It would be applicable for assaying other liquids, such as oil, or solids after proper preconditioning. Rapid isotopic alpha air monitoring is also possible using this technology. This instrument for direct counting of alpha-emitters in aqueous streams is presently being developed by Thermo Power under a development program funded by the DOE Environmental Management program (DOE-EM), administered by the Morgantown Energy Technology Center (METC). Under this contract, Thermo Power has demonstrated a solid-state, silicon-based semiconductor instrument, which uses a proprietary film-based collection system to quantitatively extract the

  13. Real-Time Tracking and In Vivo Visualization of β-Galactosidase Activity in Colorectal Tumor with a Ratiometric Near-Infrared Fluorescent Probe.

    PubMed

    Gu, Kaizhi; Xu, Yisheng; Li, Hui; Guo, Zhiqian; Zhu, Shaojia; Zhu, Shiqin; Shi, Ping; James, Tony D; Tian, He; Zhu, Wei-Hong

    2016-04-27

    Development of "smart" noninvasive bioimaging probes for trapping specific enzyme activities is highly desirable for cancer therapy in vivo. Given that β-galactosidase (β-gal) is an important biomarker for cell senescence and primary ovarian cancers, we design an enzyme-activatable ratiometric near-infrared (NIR) probe (DCM-βgal) for the real-time fluorescent quantification and trapping of β-gal activity in vivo and in situ. DCM-βgal manifests significantly ratiometric and turn-on NIR fluorescent signals simultaneously in response to β-gal concentration, which makes it favorable for monitoring dynamic β-gal activity in vivo with self-calibration in fluorescent mode. We exemplify DCM-βgal for the ratiometric tracking of endogenously overexpressed β-gal distribution in living 293T cells via the lacZ gene transfection method and OVCAR-3 cells, and further realize real-time in vivo bioimaging of β-gal activity in colorectal tumor-bearing nude mice. Advantages of our system include light-up ratiometric NIR fluorescence with large Stokes shift, high photostability, and pH independency under the physiological range, allowing for the in vivo real-time evaluation of β-gal activity at the tumor site with high-resolution three-dimensional bioimaging for the first time. Our work provides a potential tool for in vivo real-time tracking enzyme activity in preclinical applications. PMID:27054782

  14. Real-Time Tracking and In Vivo Visualization of β-Galactosidase Activity in Colorectal Tumor with a Ratiometric Near-Infrared Fluorescent Probe.

    PubMed

    Gu, Kaizhi; Xu, Yisheng; Li, Hui; Guo, Zhiqian; Zhu, Shaojia; Zhu, Shiqin; Shi, Ping; James, Tony D; Tian, He; Zhu, Wei-Hong

    2016-04-27

    Development of "smart" noninvasive bioimaging probes for trapping specific enzyme activities is highly desirable for cancer therapy in vivo. Given that β-galactosidase (β-gal) is an important biomarker for cell senescence and primary ovarian cancers, we design an enzyme-activatable ratiometric near-infrared (NIR) probe (DCM-βgal) for the real-time fluorescent quantification and trapping of β-gal activity in vivo and in situ. DCM-βgal manifests significantly ratiometric and turn-on NIR fluorescent signals simultaneously in response to β-gal concentration, which makes it favorable for monitoring dynamic β-gal activity in vivo with self-calibration in fluorescent mode. We exemplify DCM-βgal for the ratiometric tracking of endogenously overexpressed β-gal distribution in living 293T cells via the lacZ gene transfection method and OVCAR-3 cells, and further realize real-time in vivo bioimaging of β-gal activity in colorectal tumor-bearing nude mice. Advantages of our system include light-up ratiometric NIR fluorescence with large Stokes shift, high photostability, and pH independency under the physiological range, allowing for the in vivo real-time evaluation of β-gal activity at the tumor site with high-resolution three-dimensional bioimaging for the first time. Our work provides a potential tool for in vivo real-time tracking enzyme activity in preclinical applications.

  15. Engineering genetically encoded nanosensors for real-time in vivo measurements of citrate concentrations.

    PubMed

    Ewald, Jennifer C; Reich, Sabrina; Baumann, Stephan; Frommer, Wolf B; Zamboni, Nicola

    2011-01-01

    Citrate is an intermediate in catabolic as well as biosynthetic pathways and is an important regulatory molecule in the control of glycolysis and lipid metabolism. Mass spectrometric and NMR based metabolomics allow measuring citrate concentrations, but only with limited spatial and temporal resolution. Methods are so far lacking to monitor citrate levels in real-time in-vivo. Here, we present a series of genetically encoded citrate sensors based on Förster resonance energy transfer (FRET). We screened databases for citrate-binding proteins and tested three candidates in vitro. The citrate binding domain of the Klebsiella pneumoniae histidine sensor kinase CitA, inserted between the FRET pair Venus/CFP, yielded a sensor highly specific for citrate. We optimized the peptide linkers to achieve maximal FRET change upon citrate binding. By modifying residues in the citrate binding pocket, we were able to construct seven sensors with different affinities spanning a concentration range of three orders of magnitude without losing specificity. In a first in vivo application we show that E. coli maintains the capacity to take up glucose or acetate within seconds even after long-term starvation. PMID:22164251

  16. Loading Effect Correction for Real-time Aethalometer Measurements of Fresh Diesel Soot

    SciTech Connect

    Jimenez, Jorge; Claiborn, Candis; Larson, Timothy; Gould, Timothy; Kirchstetter, Thomas W.; Gundel, Lara

    2007-04-01

    In this study, a correction was developed for the aethalometer to measure real-time black carbon (BC) concentrations in an environment dominated by fresh diesel soot. The relationship between the actual mass-specific absorption coefficient for BC and the BC-dependent attenuation coefficients was determined from experiments conducted in a diesel exposure chamber that provided constant concentrations of fine particulate matter (PM; PM(2.5); PM < 2.5 microm in aerodynamic diameter) from diesel exhaust. The aethalometer reported BC concentrations decreasing with time from 48.1 to 31.5 microg m(-3) when exposed to constant PM(2.5) concentrations of 55 +/- 1 microg m(-3) and b(scat) = 95 +/- 3 Mm(-1) from diesel exhaust. This apparent decrease in reported light-absorbing PM concentration was used to derive a correction K(ATN) for loading of strong light-absorbing particles onto or into the aethalometer filter tape, which was a function of attenuation of light at 880 nm by the embedded particles.

  17. Loading effect correction for real-time aethalometer measurements of fresh diesel soot.

    PubMed

    Jimenez, Jorge; Claiborn, Candis; Larson, Timothy; Gould, Timothy; Kirchstetter, Thomas W; Gundel, Lara

    2007-07-01

    In this study, a correction was developed for the aethalometer to measure real-time black carbon (BC) concentrations in an environment dominated by fresh diesel soot. The relationship between the actual mass-specific absorption coefficient for BC and the BC-dependent attenuation coefficients was determined from experiments conducted in a diesel exposure chamber that provided constant concentrations of fine particulate matter (PM; PM(2.5); PM < 2.5 microm in aerodynamic diameter) from diesel exhaust. The aethalometer reported BC concentrations decreasing with time from 48.1 to 31.5 microg m(-3) when exposed to constant PM(2.5) concentrations of 55 +/- 1 microg m(-3) and b(scat) = 95 +/- 3 Mm(-1) from diesel exhaust. This apparent decrease in reported light-absorbing PM concentration was used to derive a correction K(ATN) for loading of strong light-absorbing particles onto or into the aethalometer filter tape, which was a function of attenuation of light at 880 nm by the embedded particles.

  18. Real-time analysis system for gas turbine ground test acoustic measurements.

    PubMed

    Johnston, Robert T

    2003-10-01

    This paper provides an overview of a data system upgrade to the Pratt and Whitney facility designed for making acoustic measurements on aircraft gas turbine engines. A data system upgrade was undertaken because the return-on-investment was determined to be extremely high. That is, the savings on the first test series recovered the cost of the hardware. The commercial system selected for this application utilizes 48 input channels, which allows either 1/3 octave and/or narrow-band analyses to be preformed real-time. A high-speed disk drive allows raw data from all 48 channels to be stored simultaneously while the analyses are being preformed. Results of tests to ensure compliance of the new system with regulations and with existing systems are presented. Test times were reduced from 5 h to 1 h of engine run time per engine configuration by the introduction of this new system. Conservative cost reduction estimates for future acoustic testing are 75% on items related to engine run time and 50% on items related to the overall length of the test.

  19. KERMA-based radiation dose management system for real-time patient dose measurement

    NASA Astrophysics Data System (ADS)

    Kim, Kyo-Tae; Heo, Ye-Ji; Oh, Kyung-Min; Nam, Sang-Hee; Kang, Sang-Sik; Park, Ji-Koon; Song, Yong-Keun; Park, Sung-Kwang

    2016-07-01

    Because systems that reduce radiation exposure during diagnostic procedures must be developed, significant time and financial resources have been invested in constructing radiation dose management systems. In the present study, the characteristics of an existing ionization-based system were compared to those of a system based on the kinetic energy released per unit mass (KERMA). Furthermore, the feasibility of using the KERMA-based system for patient radiation dose management was verified. The ionization-based system corrected the effects resulting from radiation parameter perturbations in general radiography whereas the KERMA-based system did not. Because of this difference, the KERMA-based radiation dose management system might overestimate the patient's radiation dose due to changes in the radiation conditions. Therefore, if a correction factor describing the correlation between the systems is applied to resolve this issue, then a radiation dose management system can be developed that will enable real-time measurement of the patient's radiation exposure and acquisition of diagnostic images.

  20. Multi-Fluorescence Real-Time PCR Assay for Detection of RIF and INH Resistance of M. tuberculosis

    PubMed Central

    Peng, Jingfu; Yu, Xiaoli; Cui, Zhenling; Xue, Wenfei; Luo, Ziyi; Wen, Zilu; Liu, Minghua; Jiang, Danqing; Zheng, Heping; Wu, Hai; Zhang, Shulin; Li, Yao

    2016-01-01

    Background: Failure to early detect multidrug-resistant tuberculosis (MDR-TB) results in treatment failure and poor clinical outcomes, and highlights the need to rapidly detect resistance to rifampicin (RIF) and isoniazid (INH). Methods: In Multi-Fluorescence quantitative Real-Time PCR (MF-qRT-PCR) assay, 10 probes labeled with four kinds of fluorophores were designed to detect the mutations in regions of rpoB, katG, mabA-inhA, oxyR-ahpC, and rrs. The efficiency of MF-qRT-PCR assay was tested using 261 bacterial isolates and 33 clinical sputum specimens. Among these samples, 227 Mycobacterium tuberculosis isolates were analyzed using drug susceptibility testing (DST), DNA sequencing and MF-qRT-PCR assay. Results: Compared with DST, MF-qRT-PCR sensitivity and specificity for RIF-resistance were 94.6 and 100%, respectively. And the detection sensitivity and specificity for INH-resistance were 85.9 and 95.3%, respectively. Compared with DNA sequencing, the sensitivity and specificity of our assay were 97.2 and 100% for RIF-resistance and 97.9 and 96.4% for INH-resistance. Compared with Phenotypic strain identification, MF-qRT-PCR can distinguish 227 M. tuberculosis complexes (MTC) from 34 Non-tuberculous mycobacteria (NTM) isolates with 100% accuracy rate. Conclusions: MF-qRT-PCR assay was an efficient, accurate, reliable, and easy-operated method for detection of RIF and INH-resistance, and distinction of MTC and NTM of clinical isolates. PMID:27199947

  1. A dual inhibitor against prolyl isomerase Pin1 and cyclophilin discovered by a novel real-time fluorescence detection method

    SciTech Connect

    Mori, Tadashi; Hidaka, Masafumi; Lin, Yi-Chin; Yoshizawa, Ibuki; Okabe, Takayoshi; Egashira, Shinichiro; Kojima, Hirotatsu; Nagano, Tetsuo; Koketsu, Mamoru; Takamiya, Mari; Uchida, Takafumi

    2011-03-18

    Research highlights: {yields} A Pin1 (prolyl isomerase) inhibitor, TME-001, has been discovered by using a new established high-throughput screening method. {yields} The TME-001 showed a cell-active inhibition with lower cytotoxic effect than known Pin1 inhibitors. {yields} Kinetic analyses revealed that the TME-001 is the first compound that exhibits dual inhibition of Pin1 and another type of prolyl isomerase, cyclophilin. {yields} Thus, similarities of structure and reaction mechanism between Pin1 and cyclophilin are proposed. -- Abstract: Pin1, a peptidyl prolyl cis/trans isomerase (PPIase), is a potential target molecule for cancer, infectious disease, and Alzheimer's disease. We established a high-throughput screening method for Pin1 inhibitors, which employs a real-time fluorescence detector. This screening method identified 66 compounds that inhibit Pin1 out of 9756 compounds from structurally diverse chemical libraries. Further evaluations of surface plasmon resonance methods and a cell proliferation assay were performed. We discovered a cell-active inhibitor, TME-001 (2-(3-chloro-4-fluoro-phenyl)-isothiazol-3-one). Surprisingly, kinetic analyses revealed that TME-001 is the first compound that exhibits dual inhibition of Pin1 (IC{sub 50} = 6.1 {mu}M) and cyclophilin, another type of PPIase, (IC{sub 50} = 13.7 {mu}M). This compound does not inhibit FKBP. This finding suggests the existence of similarities of structure and reaction mechanism between Pin1 and cyclophilin, and may lead to a more complete understanding of the active sites of PPIases.

  2. New real-time technique to measure the size distribution of water-insoluble aerosols.

    PubMed

    Greenwald, Roby; Bergin, Michael H; Carrico, Christian M; Grant, Don

    2005-07-01

    To date, there has been much research into the size distribution of ambient atmospheric aerosols, particularly either the total aerosol population or water-soluble ionic species such as sulfate or nitrate. Meanwhile, there have been virtually no size-resolved measurements of water-insoluble aerosols (WIA). This has been due to a lack of practical measurement technology rather than a reflection of the importance of WIA to climate and health. Particle solubility influences the planetary radiation balance both directly and indirectly: solubility influences both the amount of hygroscopic growth (and thus light scattering) that occurs as a function of relative humidity and the ability of particles to serve as cloud condensation nuclei (and thus the lifetime and albedo of clouds). Also, recent information suggests that WIA may be harmful to human health. To address these concerns, a new real-time technique has been developed to measure the size-resolved concentration of WIA. This technique involves the entrainment of particles into a liquid stream and measurement of the WIA size distribution using a liquid optical particle counter. The time resolution of this instrumentation is approximately 4 min (depending on flow rate) and is capable of sizing and counting insoluble particles with diameters of 0.25-2.0 microm at atmospheric concentrations as low as 0.1 cm(-3). Laboratory characterization using polystyrene latex spheres shows agreement within +/-5% of the liquid stream and air stream particle concentrations when adjusted for flow rate. The instrumentation was field-tested at a rural site on the edge of the metro-Atlanta urban area. During this test, the WIA concentration averaged 5% of the total particle concentration between 0.25 and 2.0 microm but reached as high as 35%.

  3. Measuring real-time streamflow using emerging technologies: Radar, hydroacoustics, and the probability concept

    USGS Publications Warehouse

    Fulton, J.; Ostrowski, J.

    2008-01-01

    Forecasting streamflow during extreme hydrologic events such as floods can be problematic. This is particularly true when flow is unsteady, and river forecasts rely on models that require uniform-flow rating curves to route water from one forecast point to another. As a result, alternative methods for measuring streamflow are needed to properly route flood waves and account for inertial and pressure forces in natural channels dominated by nonuniform-flow conditions such as mild water surface slopes, backwater, tributary inflows, and reservoir operations. The objective of the demonstration was to use emerging technologies to measure instantaneous streamflow in open channels at two existing US Geological Survey streamflow-gaging stations in Pennsylvania. Surface-water and instream-point velocities were measured using hand-held radar and hydroacoustics. Streamflow was computed using the probability concept, which requires velocity data from a single vertical containing the maximum instream velocity. The percent difference in streamflow at the Susquehanna River at Bloomsburg, PA ranged from 0% to 8% with an average difference of 4% and standard deviation of 8.81 m3/s. The percent difference in streamflow at Chartiers Creek at Carnegie, PA ranged from 0% to 11% with an average difference of 5% and standard deviation of 0.28 m3/s. New generation equipment is being tested and developed to advance the use of radar-derived surface-water velocity and instantaneous streamflow to facilitate the collection and transmission of real-time streamflow that can be used to parameterize hydraulic routing models.

  4. A bio-inspired real-time capable artificial lateral line system for freestream flow measurements.

    PubMed

    Abels, C; Qualtieri, A; De Vittorio, M; Megill, W M; Rizzi, F

    2016-06-03

    To enhance today's artificial flow sensing capabilities in aerial and underwater robotics, future robots could be equipped with a large number of miniaturized sensors distributed over the surface to provide high resolution measurement of the surrounding fluid flow. In this work we show a linear array of closely separated bio-inspired micro-electro-mechanical flow sensors whose sensing mechanism is based on a piezoresistive strain-gauge along a stress-driven cantilever beam, mimicking the biological superficial neuromasts found in the lateral line organ of fishes. Aiming to improve state-of-the-art flow sensing capability in autonomously flying and swimming robots, our artificial lateral line system was designed and developed to feature multi-parameter freestream flow measurements which provide information about (1) local flow velocities as measured by the signal amplitudes from the individual cantilevers as well as (2) propagation velocity, (3) linear forward/backward direction along the cantilever beam orientation and (4) periodicity of pulses or pulse trains determined by cross-correlating sensor signals. A real-time capable cross-correlation procedure was developed which makes it possible to extract freestream flow direction and velocity information from flow fluctuations. The computed flow velocities deviate from a commercial system by 0.09 m s(-1) at 0.5 m s(-1) and 0.15 m s(-1) at 1.0 m s(-1) flow velocity for a sampling rate of 240 Hz and a sensor distance of 38 mm. Although experiments were performed in air, the presented flow sensing system can be applied to underwater vehicles as well, once the sensors are embedded in a waterproof micro-electro-mechanical systems package.

  5. A bio-inspired real-time capable artificial lateral line system for freestream flow measurements.

    PubMed

    Abels, C; Qualtieri, A; De Vittorio, M; Megill, W M; Rizzi, F

    2016-06-01

    To enhance today's artificial flow sensing capabilities in aerial and underwater robotics, future robots could be equipped with a large number of miniaturized sensors distributed over the surface to provide high resolution measurement of the surrounding fluid flow. In this work we show a linear array of closely separated bio-inspired micro-electro-mechanical flow sensors whose sensing mechanism is based on a piezoresistive strain-gauge along a stress-driven cantilever beam, mimicking the biological superficial neuromasts found in the lateral line organ of fishes. Aiming to improve state-of-the-art flow sensing capability in autonomously flying and swimming robots, our artificial lateral line system was designed and developed to feature multi-parameter freestream flow measurements which provide information about (1) local flow velocities as measured by the signal amplitudes from the individual cantilevers as well as (2) propagation velocity, (3) linear forward/backward direction along the cantilever beam orientation and (4) periodicity of pulses or pulse trains determined by cross-correlating sensor signals. A real-time capable cross-correlation procedure was developed which makes it possible to extract freestream flow direction and velocity information from flow fluctuations. The computed flow velocities deviate from a commercial system by 0.09 m s(-1) at 0.5 m s(-1) and 0.15 m s(-1) at 1.0 m s(-1) flow velocity for a sampling rate of 240 Hz and a sensor distance of 38 mm. Although experiments were performed in air, the presented flow sensing system can be applied to underwater vehicles as well, once the sensors are embedded in a waterproof micro-electro-mechanical systems package. PMID:27257144

  6. Wavelength-dependent backscattering measurements for quantitative real-time monitoring of apoptosis in living cells

    NASA Astrophysics Data System (ADS)

    Mulvey, Christine S.; Sherwood, Carly A.; Bigio, Irving J.

    2009-11-01

    Apoptosis-programmed cell death-is a cellular process exhibiting distinct biochemical and morphological changes. An understanding of the early morphological changes that a cell undergoes during apoptosis can provide the opportunity to monitor apoptosis in tissue, yielding diagnostic and prognostic information. There is avid interest regarding the involvement of apoptosis in cancer. The initial response of a tumor to successful cancer treatment is often massive apoptosis. Current apoptosis detection methods require cell culture disruption. Our aim is to develop a nondisruptive optical method to monitor apoptosis in living cells and tissues. This would allow for real-time evaluation of apoptotic progression of the same cell culture over time without alteration. Elastic scattering spectroscopy (ESS) is used to monitor changes in light-scattering properties of cells in vitro due to apoptotic morphology changes. We develop a simple instrument capable of wavelength-resolved ESS measurements from cell cultures in the backward direction. Using Mie theory, we also develop an algorithm that extracts the size distribution of scatterers in the sample. The instrument and algorithm are validated with microsphere suspensions. For cell studies, Chinese hamster ovary (CHO) cells are cultured to confluence on plates and are rendered apoptotic with staurosporine. Backscattering measurements are performed on pairs of treated and control samples at a sequence of times up to 6-h post-treatment. Initial results indicate that ESS is capable of discriminating between treated and control samples as early as 10- to 15-min post-treatment, much earlier than is sensed by standard assays for apoptosis. Extracted size distributions from treated and control samples show a decrease in Rayleigh and 150-nm scatterers, relative to control samples, with a corresponding increase in 200-nm particles. Work continues to correlate these size distributions with underlying morphology. To our knowledge, this

  7. Real-time QEXAFS spectroscopy measures rapid precipitate formation at the mineral-water interface.

    PubMed

    Siebecker, Matthew; Li, Wei; Khalid, Syed; Sparks, Donald

    2014-01-01

    Reactions at the mineral-water interface are central to numerous geochemical processes and have consequences at local, regional and global scales. They are also important in materials science research. Kinetics greatly influences mineral-water interface reactions; however, there are few kinetic data in real-time and at the molecular scale. Here we report real-time data illustrating the rapid formation of nickel aluminium-layered double hydroxide precipitates at the mineral-water interface in a flow environment in as little as 31-40 min. Layered double hydroxides have a variety of applications in environmental remediation and materials science. The real-time data shown here enhance our fundamental understanding of the kinetics of mineral-water interface processes, such as adsorption, dissolution and precipitation, by illustrating their rapid and simultaneous occurrence in a dynamic environment. Both precipitation and adsorption can occur on the same rapid timescale. PMID:25233849

  8. Real-time emission factor measurements of isocyanic acid from light duty gasoline vehicles.

    PubMed

    Brady, James M; Crisp, Timia A; Collier, Sonya; Kuwayama, Toshihiro; Forestieri, Sara D; Perraud, Véronique; Zhang, Qi; Kleeman, Michael J; Cappa, Christopher D; Bertram, Timothy H

    2014-10-01

    Exposure to gas-phase isocyanic acid (HNCO) has been previously shown to be associated with the development of atherosclerosis, cataracts and rheumatoid arthritis. As such, accurate emission inventories for HNCO are critical for modeling the spatial and temporal distribution of HNCO on a regional and global scale. To date, HNCO emission rates from light duty gasoline vehicles, operated under driving conditions, have not been determined. Here, we present the first measurements of real-time emission factors of isocyanic acid from a fleet of eight light duty gasoline-powered vehicles (LDGVs) tested on a chassis dynamometer using the Unified Driving Cycle (UC) at the California Air Resources Board (CARB) Haagen-Smit test facility, all of which were equipped with three-way catalytic converters. HNCO emissions were observed from all vehicles, in contrast to the idealized laboratory measurements. We report the tested fleet averaged HNCO emission factors, which depend strongly on the phase of the drive cycle; ranging from 0.46 ± 0.13 mg kg fuel(-1) during engine start to 1.70 ± 1.77 mg kg fuel(-1) during hard acceleration after the engine and catalytic converter were warm. The tested eight-car fleet average fuel based HNCO emission factor was 0.91 ± 0.58 mg kg fuel(-1), within the range previously estimated for light duty diesel-powered vehicles (0.21-3.96 mg kg fuel(-1)). Our results suggest that HNCO emissions from LDGVs represent a significant emission source in urban areas that should be accounted for in global and regional models. PMID:25198906

  9. Real-time indoor and outdoor measurements of black carbon at primary schools

    NASA Astrophysics Data System (ADS)

    Reche, C.; Rivas, I.; Pandolfi, M.; Viana, M.; Bouso, L.; Àlvarez-Pedrerol, M.; Alastuey, A.; Sunyer, J.; Querol, X.

    2015-11-01

    Epidemiological and toxicological studies have demonstrated the association between Black Carbon in indoor and outdoor air and the occurrence of health risks. Data on air quality in schools is of special interest, as children are more vulnerable to health hazards. In this context, indoor and outdoor measurements of real-time Equivalent Black Carbon (EBC) were collected at 39 primary schools located in Barcelona (Spain), with classrooms naturally ventilated under warm weather conditions. A main contribution of road traffic emissions to indoor and outdoor EBC levels was evidenced through different approaches. Simultaneous measurements of EBC levels at schools under different traffic conditions revealed concentrations by 30-35% higher at schools exposed to higher vehicles intensities. Moreover, a significant correlation was obtained between average outdoor EBC levels at different districts of the city and the percentage of surface area in each district used for the road network (R2 = 0.61). Higher indoor than outdoor levels were recorded at some instances when the indoor sampling location was relatively closer to road traffic, even under low outdoor temperatures. Indeed, the average indoor/outdoor EBC ratios for each school correlate moderately between campaigns in spite of significant differences in temperature between sampling periods. These two facts highlight the strong dependency of the EBC levels on the distance to traffic. The peaks of exposure inside the classrooms seemed to be determined by outdoor concentrations, as shown by the parallelism between indoor and outdoor mean EBC daily cycles and the similar contribution of traffic rush hours to indoor and outdoor daily mean levels. The airtightness of the classroom was suggested as the responsible for the indoor/outdoor ratios of EBC higher than 1 recorded at nights.

  10. Real-time emission factor measurements of isocyanic acid from light duty gasoline vehicles.

    PubMed

    Brady, James M; Crisp, Timia A; Collier, Sonya; Kuwayama, Toshihiro; Forestieri, Sara D; Perraud, Véronique; Zhang, Qi; Kleeman, Michael J; Cappa, Christopher D; Bertram, Timothy H

    2014-10-01

    Exposure to gas-phase isocyanic acid (HNCO) has been previously shown to be associated with the development of atherosclerosis, cataracts and rheumatoid arthritis. As such, accurate emission inventories for HNCO are critical for modeling the spatial and temporal distribution of HNCO on a regional and global scale. To date, HNCO emission rates from light duty gasoline vehicles, operated under driving conditions, have not been determined. Here, we present the first measurements of real-time emission factors of isocyanic acid from a fleet of eight light duty gasoline-powered vehicles (LDGVs) tested on a chassis dynamometer using the Unified Driving Cycle (UC) at the California Air Resources Board (CARB) Haagen-Smit test facility, all of which were equipped with three-way catalytic converters. HNCO emissions were observed from all vehicles, in contrast to the idealized laboratory measurements. We report the tested fleet averaged HNCO emission factors, which depend strongly on the phase of the drive cycle; ranging from 0.46 ± 0.13 mg kg fuel(-1) during engine start to 1.70 ± 1.77 mg kg fuel(-1) during hard acceleration after the engine and catalytic converter were warm. The tested eight-car fleet average fuel based HNCO emission factor was 0.91 ± 0.58 mg kg fuel(-1), within the range previously estimated for light duty diesel-powered vehicles (0.21-3.96 mg kg fuel(-1)). Our results suggest that HNCO emissions from LDGVs represent a significant emission source in urban areas that should be accounted for in global and regional models.

  11. Assimilating Electron Density Profiles Measured by the Real Time Global Ionospheric Radio Observatory - GIRO

    NASA Astrophysics Data System (ADS)

    Reinisch, B. W.; Galkin, I. A.

    2009-04-01

    Operational applications of ionospheric models, whether they are first principles or data-driven models, rely on the accuracy of the models during quiet and disturbed conditions. Of course models can correctly describe ionospheric weather only if they assimilate measured ionospheric characteristics and electron density profiles (EDPs). For the "assimilating model" to make correct predictions, the measurements in turn must be accurate and reliable. Ionosondes provide the most accurate vertical EDPs at the site locations but do not cover all parts of the globe. Ionogram-derived EDPs have become the ground truth reference for ionospheric specification, presenting the unrivaled accuracy of the data on continuous demand for validation of alternative ionospheric techniques, including radio occultation, ultraviolet, and tomography. In recent years the digisonde network of ionosondes has grown to eighty stations and is expected to expand to more than 100 stations in the next couple of years. The new Digisonde-4D is running the Automatic Real Time Ionogram Scaler with True height inversion, ARTIST-5. The ARTIST-5 autoscaling program now calculates the EDPs together with density uncertainty limits at each height, making the data products suitable for ingestion in assimilative ionospheric models. In order to specify uncertainty at each height, two boundary profiles, inner and outer, are determined. The inner and outer boundaries reflect the uncertainties of the critical frequencies of each layer, the internal uncertainty of the starting height of the profile, and the uncertainties of the E valley model representation. The actual uncertainties are calculated from a cumulative difference characteristic representing a mismatch between automatically and manually scaled parameters (i.e., foF2, foF1) for the same ionogram. The cumulative differences are determined from statistical analysis of a large amount of ionograms for a specific station. The characteristics of interest are

  12. Real-Time Quadrature Measurement of a Single-Photon Wave Packet with Continuous Temporal-Mode Matching

    NASA Astrophysics Data System (ADS)

    Ogawa, Hisashi; Ohdan, Hideaki; Miyata, Kazunori; Taguchi, Masahiro; Makino, Kenzo; Yonezawa, Hidehiro; Yoshikawa, Jun-ichi; Furusawa, Akira

    2016-06-01

    Real-time controls based on quantum measurements are powerful tools for various quantum protocols. However, their experimental realization has been limited by mode mismatch between the temporal mode of quadrature measurement and that heralded by photon detection. Here, we demonstrate real-time quadrature measurement of a single-photon wave packet induced by photon detection by utilizing continuous temporal-mode matching between homodyne detection and an exponentially rising temporal mode. Single photons in exponentially rising modes are also expected to be useful resources for interactions with other quantum systems.

  13. Real-Time Quadrature Measurement of a Single-Photon Wave Packet with Continuous Temporal-Mode Matching.

    PubMed

    Ogawa, Hisashi; Ohdan, Hideaki; Miyata, Kazunori; Taguchi, Masahiro; Makino, Kenzo; Yonezawa, Hidehiro; Yoshikawa, Jun-Ichi; Furusawa, Akira

    2016-06-10

    Real-time controls based on quantum measurements are powerful tools for various quantum protocols. However, their experimental realization has been limited by mode mismatch between the temporal mode of quadrature measurement and that heralded by photon detection. Here, we demonstrate real-time quadrature measurement of a single-photon wave packet induced by photon detection by utilizing continuous temporal-mode matching between homodyne detection and an exponentially rising temporal mode. Single photons in exponentially rising modes are also expected to be useful resources for interactions with other quantum systems.

  14. Quantitative real-time PCR and fluorescence in situ hybridization approaches for enumerating Brevundimonas diminuta in drinking water.

    PubMed

    Donofrio, Robert S; Bestervelt, Lorelle L; Saha, Ratul; Bagley, Susan T

    2010-09-01

    Brevundimonas diminuta is a small Gram-negative bacterium used for validation of membranes and filters used in the pharmaceutical and drinking water treatment industries. Current assays are time consuming, nonselective, and may be subject to interference by competing indigenous microorganisms. The focus of this study is to develop rapid and specific enumeration methodologies for B. diminuta. Quantitative real-time polymerase chain reaction (qPCR) and fluorescence in situ hybridization (FISH) assays were developed based on the gyrB (1,166 bp) and rpoD (829 bp) gene sequences of B. diminuta ATCC 19146. Species-specific primers and probes were designed, and a 100-200 bp segment of each gene was targeted in the qPCR studies. For both the qPCR and FISH assays, an internal 25 bp sequence was selected for use as a TaqMan probe (labeled with 6-FAM and a Black Hole Quencher). Probe specificity studies, conducted against Gram-negative and Gram-positive reference strains as well as environmental strains, revealed high specificity of the primer/probe pairs to B. diminuta. Sensitivities of the qPCR reactions using purified genomic DNA from B. diminuta were determined to be 0.89 pg for rpoD and 8.9 pg for gyrB. The feasibility of using whole-cell B. diminuta suspensions directly with the rpoD qPCR protocol was also evaluated. The greatest sensitivity observed for B. diminuta was 1 x 10(3) colony forming units (CFU) per mL when tryptic soy broth was used as the growth medium. When compared with direct microscopic enumeration using a 5' 6-FAM FISH probe, traditional plating methods showed significant underestimation of B. diminuta concentration (P = 0.01) when this organism was cultivated in saline lactose broth. The results of this investigation demonstrate that qPCR and FISH are effective methods for rapid (<4 h) enumeration of B. diminuta and may be viable alternatives to plating when validating drinking water filtration systems.

  15. Automated Historical and Real-Time Cyclone Discovery With Multimodal Remote Satellite Measurements

    NASA Astrophysics Data System (ADS)

    Ho, S.; Talukder, A.; Liu, T.; Tang, W.; Bingham, A.

    2008-12-01

    methodology can be applied to (i) historical data to support Earth scientists in climate modeling, cyclonic-climate interactions, and obtain a better understanding of the cause and effects of cyclone (e.g. cyclo-genesis), and (ii) automatic cyclone discovery in near real-time using streaming satellite to support and improve the planning of global cyclone field campaigns. Additional satellite data from GOES and other orbiting satellites can be easily assimilated and integrated into our automated cyclone detection and tracking module to improve the temporal tracking accuracy of cyclones down to ½ hr and reduce the incidence of false alarms.

  16. Detectors and electronics for real time measurement of radiation dose and quality using the variance method

    NASA Astrophysics Data System (ADS)

    Hsu, Wen-Hsing

    The product of the radiation dose and radiation quality indicates the biological consequences of radiation exposure. Therefore, quantifying both radiation dose and radiation quality is important to biological experiments as well as radiation protection. A small, specialized amplifier based on commercial ICs was developed to measure the radiation dose and quality in real-time using a microdosimetric detector, operated in the current mode, and the variance method. The random nature of radiation induces variance in the dose (in a small volume such as that of cell or DNA) for a specific radiation field that is proportional to the radiation quality. The charges from the microdosimetric detector, operated in the current mode, were repeatedly collected for a fixed period of time for 20 cycles of 100 integrations, and processed by the specialized amplifier to produce signals of pulse height between 0 and 10 volts. These signals with various amplitudes, which are proportional to the channel number, were then recorded by the MCA and stored in a computer. FORTRAN programs written in this study then calculated the average dose and the average dose variance from the stored data. Benchmarks of different brand's ICs were conducted to select a component with the best performance versus cost. The specialized amplifier showed the following characteristics: low input capacitance, low output impedance, adjustable integration time for controlling the amount of charge collected from the detector, linearity of system response to input currents, adjustable gain control, and low background noise. Standardized procedures of constructing a functional device (the specialized amplifier) were established, including arrangements of circuit diagram, processing of a printed circuit board, and construction of an aluminum-shielding box that served as a united ground point. In addition, procedures for determining the inner dimensions of the detector using radiography are also presented along with

  17. Unmanned Airborne System Deployment at Turrialba Volcano for Real Time Eruptive Cloud Measurements

    NASA Astrophysics Data System (ADS)

    Diaz, J. A.; Pieri, D. C.; Fladeland, M. M.; Bland, G.; Corrales, E.; Alan, A., Jr.; Alegria, O.; Kolyer, R.

    2015-12-01

    The development of small unmanned aerial systems (sUAS) with a variety of instrument packages enables in situ and proximal remote sensing measurements of volcanic plumes, even when the active conditions of the volcano do not allow volcanologists and emergency response personnel to get too close to the erupting crater. This has been demonstrated this year by flying a sUAS through the heavy ash driven erupting volcanic cloud of Turrialba Volcano, while conducting real time in situ measurement of gases over the crater summit. The event also achieved the collection of newly released ash samples from the erupting volcano. The interception of the Turrialba ash cloud occurred during the CARTA 2015 field campaign carried out as part of an ongoing program for remote sensing satellite calibration and validation purposes, using active volcanic plumes. These deployments are timed to support overflights of the Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) onboard the NASA Terra satellite on a bimonthly basis using airborne platforms such as tethered balloons, free-flying fixed wing small UAVs at altitudes up to 12.5Kft ASL within about a 5km radius of the summit crater. The onboard instrument includes the MiniGas payload which consists of an array of single electrochemical and infrared gas detectors (SO2, H2S CO2), temperature, pressure, relative humidity and GPS sensors, all connected to an Arduino-based board, with data collected at 1Hz. Data are both stored onboard and sent by telemetry to the ground operator within a 3 km range. The UAV can also carry visible and infrared cameras as well as other payloads, such as a UAV-MS payload that is currently under development for mass spectrometer-based in situ measurements. The presentation describes the ongoing UAV- based in situ remote sensing validation program at Turrialba Volcano, the results of a fly-through the eruptive cloud, as well as future plans to continue these efforts. Work presented here was

  18. A 32-channel photon counting module with embedded auto/cross-correlators for real-time parallel fluorescence correlation spectroscopy

    SciTech Connect

    Gong, S.; Labanca, I.; Rech, I.; Ghioni, M.

    2014-10-15

    Fluorescence correlation spectroscopy (FCS) is a well-established technique to study binding interactions or the diffusion of fluorescently labeled biomolecules in vitro and in vivo. Fast FCS experiments require parallel data acquisition and analysis which can be achieved by exploiting a multi-channel Single Photon Avalanche Diode (SPAD) array and a corresponding multi-input correlator. This paper reports a 32-channel FPGA based correlator able to perform 32 auto/cross-correlations simultaneously over a lag-time ranging from 10 ns up to 150 ms. The correlator is included in a 32 × 1 SPAD array module, providing a compact and flexible instrument for high throughput FCS experiments. However, some inherent features of SPAD arrays, namely afterpulsing and optical crosstalk effects, may introduce distortions in the measurement of auto- and cross-correlation functions. We investigated these limitations to assess their impact on the module and evaluate possible workarounds.

  19. A 32-channel photon counting module with embedded auto/cross-correlators for real-time parallel fluorescence correlation spectroscopy

    PubMed Central

    Gong, S.; Labanca, I.; Rech, I.; Ghioni, M.

    2014-01-01

    Fluorescence correlation spectroscopy (FCS) is a well-established technique to study binding interactions or the diffusion of fluorescently labeled biomolecules in vitro and in vivo. Fast FCS experiments require parallel data acquisition and analysis which can be achieved by exploiting a multi-channel Single Photon Avalanche Diode (SPAD) array and a corresponding multi-input correlator. This paper reports a 32-channel FPGA based correlator able to perform 32 auto/cross-correlations simultaneously over a lag-time ranging from 10 ns up to 150 ms. The correlator is included in a 32 × 1 SPAD array module, providing a compact and flexible instrument for high throughput FCS experiments. However, some inherent features of SPAD arrays, namely afterpulsing and optical crosstalk effects, may introduce distortions in the measurement of auto- and cross-correlation functions. We investigated these limitations to assess their impact on the module and evaluate possible workarounds. PMID:25362365

  20. Near Real-Time Isotopic Measurements of Carbon Dioxide from Outgassing Volcanoes

    NASA Astrophysics Data System (ADS)

    Stix, J.; Lucic, G.; Malowany, K.

    2014-12-01

    For the past several years we have been using a Picarro G1101-i isotopic mass analyzer to study the behavior of carbon dioxide emanating from active volcanoes. Because of its portability (it weighs about 30 kg), the instrument accompanies us on our field campaigns. Typically, we collect gas samples during the day and analyze them in the evening. The result is near-real-time isotopic measurements of CO2, and we are thus able to plan and adjust our field campaigns according to the results that we obtain on a continual basis. This is the primary advantage of the instrument. The G1101-i requires about 350 watts of power, typically provided by wall current with an uninterruptible power supply between the wall and instrument to deal with power fluctuations and outages. We calibrate the instrument every 2-5 days with a series of four well-characterized gas standards which we bring with us into the field in evacuated glass containers. Calibrations are typically robust and highly linear, with sub per mil precision. We also normally obtain a few samples which we analyze both by the G1101-i and later by mass spectrometry, in order to provide an independent means of checking our accuracy. Standards and samples are typically analyzed at similar CO2 concentrations to minimize any concentration-dependent effects on the isotopic analysis, even though these are generally small to negligible. Our applications so far have been focused at one caldera system and one subduction-related stratovolcano. We have analyzed soil gases at Long Valley caldera, California, to study the interplay of volcanic and tectonic controls upon diffuse CO2 release. We have analyzed CO2 in the the plume of Turrialba volcano, Costa Rica, to identify the volcanic isotopic signal and understand the mixing of the plume with surrounding atmosphere. At both localities, with appropriate dilutions as needed, we have been able to analyze the isotopic signal for CO2 concentrations ranging from atmospheric (400 ppm) to

  1. XpertTrack: Precision Autonomous Measuring Device Developed for Real Time Shipments Tracker.

    PubMed

    Viman, Liviu; Daraban, Mihai; Fizesan, Raul; Iuonas, Mircea

    2016-01-01

    This paper proposes a software and hardware solution for real time condition monitoring applications. The proposed device, called XpertTrack, exchanges data through the GPRS protocol over a GSM network and monitories temperature and vibrations of critical merchandise during commercial shipments anywhere on the globe. Another feature of this real time tracker is to provide GPS and GSM positioning with a precision of 10 m or less. In order to interpret the condition of the merchandise, the data acquisition, analysis and visualization are done with 0.1 °C accuracy for the temperature sensor, and 10 levels of shock sensitivity for the acceleration sensor. In addition to this, the architecture allows increasing the number and the types of sensors, so that companies can use this flexible solution to monitor a large percentage of their fleet. PMID:26978360

  2. XpertTrack: Precision Autonomous Measuring Device Developed for Real Time Shipments Tracker

    PubMed Central

    Viman, Liviu; Daraban, Mihai; Fizesan, Raul; Iuonas, Mircea

    2016-01-01

    This paper proposes a software and hardware solution for real time condition monitoring applications. The proposed device, called XpertTrack, exchanges data through the GPRS protocol over a GSM network and monitories temperature and vibrations of critical merchandise during commercial shipments anywhere on the globe. Another feature of this real time tracker is to provide GPS and GSM positioning with a precision of 10 m or less. In order to interpret the condition of the merchandise, the data acquisition, analysis and visualization are done with 0.1 °C accuracy for the temperature sensor, and 10 levels of shock sensitivity for the acceleration sensor. In addition to this, the architecture allows increasing the number and the types of sensors, so that companies can use this flexible solution to monitor a large percentage of their fleet. PMID:26978360

  3. Real-time in situ electron spin resonance measurements on fungal spores of Penicillium digitatum during exposure of oxygen plasmas

    NASA Astrophysics Data System (ADS)

    Ishikawa, Kenji; Mizuno, Hiroko; Tanaka, Hiromasa; Tamiya, Kazuhiro; Hashizume, Hiroshi; Ohta, Takayuki; Ito, Masafumi; Iseki, Sachiko; Takeda, Keigo; Kondo, Hiroki; Sekine, Makoto; Hori, Masaru

    2012-07-01

    We report the kinetic analysis of free radicals on fungal spores of Penicillium digitatum interacted with atomic oxygen generated plasma electric discharge using real time in situ electron spin resonance (ESR) measurements. We have obtained information that the ESR signal from the spores was observed and preliminarily assignable to semiquinone radical with a g-value of around 2.004 and a line width of approximately 5G. The decay of the signal is possibly linked to the inactivation of the fungal spore. The real-time in situ ESR has proven to be a useful method to elucidate plasma-induced surface reactions on biological specimens.

  4. Real-time ultrasonic measurement of fat thickness and longissimus muscle area: II. Relationship between real-time ultrasound measures and carcass retail yield.

    PubMed

    Hamlin, K E; Green, R D; Cundiff, L V; Wheeler, T L; Dikeman, M E

    1995-06-01

    Feedlot steers (n = 180) representing 11 sire-breed groups were ultrasonically measured for fat thickness (FTU) and longissimus muscle area (LMU) at two 60-d intervals during the feeding period and four 21-d intervals corresponding to serial slaughter dates to predict carcass retail yield parameters. Two fat trim levels, 8 and 0 mm, were used to calculate percentage of trimmable fat (FAT8P and FAT0P) and retail product percentage (RPD8P and RPD0P) for each carcass. Regression techniques were used to evaluate best-fit equations that explained variation in retail product components. When FAT8P, FAT0P, RPD8P, and RPD0P were regressed on USDA yield grade (YG), R2 values ranged from 75 to 76% (P < .001). Comparatively, when live animal predictors of YG components (FTU, LMU, and final live weight) were used as the independent variables, equations predicting retail yield had R2 values of 61 to 65% (P < .01). Equations using final FTU as the independent variable explained 58 to 64% (P < .001) of the variation in FAT8P, FAT0P, RPD8P, and RPD0P. Equations with FTU, LMU, and either WT, AGE, marbling, or quality grade resulted in R2 values similar to those with only FTU, indicating the strong influence of fat on retail yields. These results indicate that ultrasonic predictors explained about 10% less variation in retail product percentage than did carcass measures. PMID:7673066

  5. Novel real-time monitoring system for human cytomegalovirus-infected cells in vitro that uses a green fluorescent protein-PML-expressing cell line.

    PubMed

    Ueno, T; Eizuru, Y; Katano, H; Kurata, T; Sata, T; Irie, S; Ogawa-Goto, K

    2006-08-01

    Promyelocytic leukemia (PML) bodies are discrete nuclear foci that are intimately associated with many DNA viruses. In human cytomegalovirus (HCMV) infection, the IE1 (for "immediate-early 1") protein has a marked effect on PML bodies via de-SUMOylation of PML protein. Here, we report a novel real-time monitoring system for HCMV-infected cells using a newly established cell line (SE/15) that stably expresses green fluorescent protein (GFP)-PML protein. In SE/15 cells, HCMV infection causes specific and efficient dispersion of GFP-PML bodies in an IE1-dependent manner, allowing the infected cells to be monitored by fluorescence microscopy without immunostaining. Since a specific change in the detergent solubility of GFP-PML occurs upon infection, the infected cells can be quantified by GFP fluorescence measurement after extraction. With this assay, the inhibitory effects of heparin and neutralizing antibodies were determined in small-scale cultures, indicating its usefulness for screening inhibitory reagents for laboratory virus strains. Furthermore, we established a sensitive imaging assay by counting the number of nuclei containing dispersed GFP-PML, which is applicable for titration of slow-growing clinical isolates. In all strains tested, the virus titers estimated by the GFP-PML imaging assay were well correlated with the plaque-forming cell numbers determined in human embryonic lung cells. Coculture of SE/15 cells and HCMV-infected fibroblasts permitted a rapid and reliable method for estimating the 50% inhibitory concentration values of drugs for clinical isolates in susceptibility testing. Taken together, these results demonstrate the development of a rapid, sensitive, quantitative, and specific detection system for HCMV-infected cells involving a simple procedure that can be used for titration of low-titer clinical isolates.

  6. Development of a methodology to measure the effect of ergot alkaloids on forestomach motility using real-time wireless telemetry

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The objectives of these experiments were to characterize rumen motility patterns of cattle fed once daily using a real-time wireless telemetry system, determine when to measure rumen motility with this system, and determine the effect of ruminal dosing of ergot alkaloids on rumen motility. Ruminally...

  7. REAL-TIME MEASUREMENT OF AIRWAY RESPONSES TO SULOFUR DIOXIDE (SO2) IN AN INTACT, AWAKE GUINEA PIG MODEL

    EPA Science Inventory

    Real-time measurment of airway responses to Sulfur Dioxide (SO2) in an intact, awake guinea pig model. J Stanek1,2, Q Krantz2, J Nolan2, D Winsett2, W Watkinson2, and D Costa2. 1College of Veterinary Medicine, NCSU, Raleigh, NC, USA; 2Pulmonary Toxicology Branch, ETD, NHEERL, US...

  8. High-speed real-time 3-D coordinates measurement based on fringe projection profilometry considering camera lens distortion

    NASA Astrophysics Data System (ADS)

    Feng, Shijie; Chen, Qian; Zuo, Chao; Sun, Jiasong; Yu, Shi Ling

    2014-10-01

    Optical three-dimensional (3-D) profilometry is gaining increasing attention for its simplicity, flexibility, high accuracy, and non-contact nature. Recent advances in imaging sensors and digital projection technology further its progress in high-speed, real-time applications, enabling 3-D shapes reconstruction of moving objects and dynamic scenes. However, the camera lens is never perfect and the lens distortion does influence the accuracy of the measurement result, which is often overlooked in the existing real-time 3-D shape measurement systems. To this end, here we present a novel high-speed real-time 3-D coordinates measuring technique based on fringe projection with the consideration of the camera lens distortion. A pixel mapping relation between a distorted image and a corrected one is pre-determined and stored in computer memory for real-time fringe correction. The out-of-plane height is obtained firstly and the acquisition for the two corresponding in-plane coordinates follows on the basis of the solved height. Besides, a method of lookup table (LUT) is introduced as well for fast data processing. Our experimental results reveal that the measurement error of the in-plane coordinates has been reduced by one order of magnitude and the accuracy of the out-plane coordinate been tripled after the distortions being eliminated. Moreover, owing to the generated LUTs, a 3-D reconstruction speed of 92.34 frames per second can be achieved.

  9. Real-Time Measurement of Rates of Outdoor Airflow into HVACSystems: A Field Study of Three Technologies

    SciTech Connect

    Fisk, William J.; Sullivan, Douglas P.; Faulkner, David

    2005-09-01

    Technologies for real-time continuous measurement of the flow rates of outdoor air (OA) into HVAC systems are now available commercially. Our prior papers reported on laboratory-based evaluations of these measurement technologies and this document describes the methods and results of a field study of the accuracy of three of these technologies. From the field study data, we determined that neither wind speed nor wind direction have an important adverse impact on measurement accuracy. The field study confirmed that these three measurement technologies can provide reasonably accurate measurements of outdoor air intake rates in field settings, if the pressure signals are measured with high accuracy. Some of the pressure transducers marketed for use with commercial HVAC systems were determined to be sufficiently accurate for this application. Given the significant impact of OA flow rates on both energy use and occupant health, more widespread use of technologies that provide for real time measurements of OA flow rates seems warranted.

  10. A CCD-based fluorescence imaging system for real-time loop-mediated isothermal amplification-based rapid and sensitive detection of waterborne pathogens on microchips.

    PubMed

    Ahmad, Farhan; Seyrig, Gregoire; Tourlousse, Dieter M; Stedtfeld, Robert D; Tiedje, James M; Hashsham, Syed A

    2011-10-01

    Rapid, sensitive, and low-cost pathogen diagnostic systems are needed for early disease diagnosis and treatment, especially in resource-limited settings. This study reports a low-cost charge-coupled device (CCD)-based fluorescence imaging system for rapid detection of waterborne pathogens by isothermal gene amplification in disposable microchips. Fluorescence imaging capability of this monochromatic CCD camera is evaluated by optimizing the gain, offset, and exposure time. This imaging system is validated for 12 virulence genes of major waterborne pathogens on cyclic olefin polymer (COP) microchips, using SYTO-82 dye and real time fluorescence loop-mediated isothermal amplification referred here as microRT(f)-LAMP. Signal-to-noise ratio (SNR) and threshold time (Tt) of microRT(f)-LAMP assays are compared with those from a commercial real-time polymerase chain reaction (PCR) instrument. Applying a CCD exposure of 5 s to 10(5) starting DNA copies of microRT(f)-LAMP assays increases the SNR by 8-fold and reduces the Tt by 9.8 min in comparison to a commercial real-time PCR instrument. Additionally, single copy level sensitivity for Campylobacter jejuni 0414 gene is obtained for microRT(f)-LAMP with a Tt of 19 min, which is half the time of the commercial real-time PCR instrument. Due to the control over the exposure time and the wide field imaging capability of CCD, this low-cost fluorescence imaging system has the potential for rapid and parallel detection of pathogenic microorganisms in high throughput microfluidic chips.

  11. [Measurement of left atrial and ventricular volumes in real-time 3D echocardiography. Validation by nuclear magnetic resonance

    NASA Technical Reports Server (NTRS)

    Bauer, F.; Shiota, T.; Qin, J. X.; White, R. D.; Thomas, J. D.

    2001-01-01

    The measurement of the left ventricular ejection fraction is important for the evaluation of cardiomyopathy and depends on the measurement of left ventricular volumes. There are no existing conventional echocardiographic means of measuring the true left atrial and ventricular volumes without mathematical approximations. The aim of this study was to test anew real time 3-dimensional echocardiographic system of calculating left atrial and ventricular volumes in 40 patients after in vitro validation. The volumes of the left atrium and ventricle acquired from real time 3-D echocardiography in the apical view, were calculated in 7 sections parallel to the surface of the probe and compared with atrial (10 patients) and ventricular (30 patients) volumes calculated by nuclear magnetic resonance with the simpson method and with volumes of water in balloons placed in a cistern. Linear regression analysis showed an excellent correlation between the real volume of water in the balloons and volumes given in real time 3-dimensional echocardiography (y = 0.94x + 5.5, r = 0.99, p < 0.001, D = -10 +/- 4.5 ml). A good correlation was observed between real time 3-dimensional echocardiography and nuclear magnetic resonance for the measurement of left atrial and ventricular volumes (y = 0.95x - 10, r = 0.91, p < 0.001, D = -14.8 +/- 19.5 ml and y = 0.87x + 10, r = 0.98, P < 0.001, D = -8.3 +/- 18.7 ml, respectively. The authors conclude that real time three-dimensional echocardiography allows accurate measurement of left heart volumes underlying the clinical potential of this new 3-D method.

  12. Real-time, continuous, fluorescence sensing in a freely-moving subject with an implanted hybrid VCSEL/CMOS biosensor

    PubMed Central

    O’Sullivan, Thomas D.; Heitz, Roxana T.; Parashurama, Natesh; Barkin, David B.; Wooley, Bruce A.; Gambhir, Sanjiv S.; Harris, James S.; Levi, Ofer

    2013-01-01

    Performance improvements in instrumentation for optical imaging have contributed greatly to molecular imaging in living subjects. In order to advance molecular imaging in freely moving, untethered subjects, we designed a miniature vertical-cavity surface-emitting laser (VCSEL)-based biosensor measuring 1cm3 and weighing 0.7g that accurately detects both fluorophore and tumor-targeted molecular probes in small animals. We integrated a critical enabling component, a complementary metal-oxide semiconductor (CMOS) read-out integrated circuit, which digitized the fluorescence signal to achieve autofluorescence-limited sensitivity. After surgical implantation of the lightweight sensor for two weeks, we obtained continuous and dynamic fluorophore measurements while the subject was un-anesthetized and mobile. The technology demonstrated here represents a critical step in the path toward untethered optical sensing using an integrated optoelectronic implant. PMID:24009996

  13. Portable, real-time alloy identification of metallic wear debris from machinery lubrication systems: laser-induced breakdown spectroscopy versus x-ray fluorescence

    NASA Astrophysics Data System (ADS)

    Suresh, Pooja

    2014-05-01

    Alloy identification of oil-borne wear debris captured on chip detectors, filters and magnetic plugs allows the machinery maintainer to assess the health of the engine or gearbox and identify specific component damage. Today, such identification can be achieved in real time using portable, at-line laser-induced breakdown spectroscopy (LIBS) and Xray fluorescence (XRF) instruments. Both techniques can be utilized in various industries including aviation, marine, railways, heavy diesel and other industrial machinery with, however, some substantial differences in application and instrument performance. In this work, the performances of a LIBS and an XRF instrument are compared based on measurements of a wide range of typical aerospace alloys including steels, titanium, aluminum and nickel alloys. Measurement results were analyzed with a staged correlation technique specifically developed for the purposes of this study - identifying the particle alloy composition using a pre-recorded library of spectral signatures. The analysis is performed in two stages: first, the base element of the alloy is determined by correlation with the stored elemental spectra and then, the alloy is identified by matching the particle's spectral signature using parametric correlation against the stored spectra of all alloys that have the same base element. The correlation analysis has achieved highly repeatable discrimination between alloys of similar composition. Portable LIBS demonstrates higher detection accuracy and better identification of alloys comprising lighter elements as compared to that of the portable XRF system, and reveals a significant reduction in the analysis time over XRF.

  14. PIV measurements in a real time controlled model wind turbine wake simulator

    NASA Astrophysics Data System (ADS)

    Castillo, R.; Wang, Y.; Monk, T.; Vasquez, S.; Pol, S.; Ren, B.; Swift, A.; Hussain, F.; Westergaard, C. H.

    2016-09-01

    A wind tunnel based “Hyper Accelerated Wind Farm Kinematic-Control Simulator” (HAWKS) is being built at Texas Tech University (TTU) to emulate controlled wind turbine flow physics. The HAWKS model turbine has pitch, yaw and speed controls that could be operated in real time with different power coefficient (Cp) conditions. The purpose of HAWKS is to simulate control strategies, operating at much faster turnaround times. Currently, the fundamental building blocks of the simulator are being tested. A few salient tests results are presented here.

  15. Comparison of different real time VOC measurement techniques in a ponderosa pine forest

    NASA Astrophysics Data System (ADS)

    Kaser, L.; Karl, T.; Schnitzhofer, R.; Graus, M.; Herdlinger-Blatt, I. S.; DiGangi, J. P.; Sive, B.; Turnipseed, A.; Hornbrook, R. S.; Zheng, W.; Flocke, F. M.; Guenther, A.; Keutsch, F. N.; Apel, E.; Hansel, A.

    2013-03-01

    Volatile organic compound (VOC) mixing ratios measured by five independent instruments are compared at a forested site dominated by ponderosa pine (Pinus Ponderosa) during the BEACHON-ROCS field study in summer 2010. The instruments included a Proton Transfer Reaction Time of Flight Mass Spectrometer (PTR-TOF-MS), a Proton Transfer Reaction Quadrupole Mass Spectrometer (PTR-MS), a Fast Online Gas-Chromatograph coupled to a Mass Spectrometer (GC/MS; TOGA), a Thermal Dissociation Chemical Ionization Mass Spectrometer (PAN-CIMS) and a Fiber Laser-Induced Fluorescence Instrument (FILIF). The species discussed in this comparison include the most important biogenic VOCs and a selected suite of oxygenated VOCs that are thought to dominate the VOC reactivity at this particular site as well as typical anthropogenic VOCs that showed low mixing ratios at this site. Good agreement was observed for methanol, the sum of the oxygenated hemiterpene 2-methyl-3-buten-2-ol (MBO) and the hemiterpene isoprene, acetaldehyde, the sum of acetone and propanal, benzene and the sum of methyl ethyl ketone (MEK) and butanal. Measurements of the above VOCs conducted by different instruments agree within 20%. The ability to differentiate the presence of toluene and cymene by PTR-TOF-MS is tested based on a comparison with GC-MS measurements, suggesting a study-average relative contribution of 74% for toluene and 26% for cymene. Similarly, 2-hydroxy-2-methylpropanal (HMPR) is found to interfere with the sum of methyl vinyl ketone and methacrolein (MVK + MAC) using PTR-(TOF)-MS at this site. A study-average relative contribution of 85% for MVK + MAC and 15% for HMPR was determined. The sum of monoterpenes measured by PTR-MS and PTR-TOF-MS was generally 20-25% higher than the sum of speciated monoterpenes measured by TOGA, which included α-pinene, β-pinene, camphene, carene, myrcene, limonene, cineole as well as other terpenes. However, this difference is consistent throughout the study, and

  16. Comparison of different real time VOC measurement techniques in a ponderosa pine forest

    NASA Astrophysics Data System (ADS)

    Kaser, L.; Karl, T.; Schnitzhofer, R.; Graus, M.; Herdlinger-Blatt, I. S.; DiGangi, J. P.; Sive, B.; Turnipseed, A.; Hornbrook, R. S.; Zheng, W.; Flocke, F. M.; Guenther, A.; Keutsch, F. N.; Apel, E.; Hansel, A.

    2012-10-01

    Volatile organic compound (VOC) mixing ratios measured by five independent instruments are compared at a forested site dominated by ponderosa pine (Pinus Ponderosa) during the BEACHON-ROCS field study in summer 2010. The instruments included a Proton Transfer Reaction Time of Flight Mass Spectrometer (PTR-TOF-MS), a Proton Transfer Reaction Quadrupole Mass Spectrometer (PTR-MS), a Fast Online Gas-Chromatograph coupled to a Mass Spectrometer (GC/MS; TOGA), a Thermal Dissociation Chemical Ionization Mass Spectrometer (PAN-CIMS) and a Fiber Laser-Induced Fluorescence Instrument (FILIF). The species discussed in this comparison include the most important biogenic VOCs and a selected suite of oxygenated VOCs that are thought to dominate the VOC reactivity at this particular site as well as typical anthropogenic VOCs that showed low mixing ratios at this site. Good agreement was observed for methanol, the sum of the oxygenated hemiterpene 2-methyl-3-buten-2-ol (MBO) and the hemiterpene isoprene, acetaldehyde, the sum of acetone and propanal, benzene and the sum of methyl ethyl ketone (MEK) and butanal. Measurements of the above VOCs conducted by different instruments agree within 20%. The ability to differentiate the presence of toluene and cymene by PTR-TOF-MS is tested based on a comparison with GC-MS measurements, suggesting a study-average relative contribution of 74% for toluene and 26% for cymene. Similarly, 2-hydroxy-2-methylpropanal (HMPR) is found to interfere with the sum of methyl vinyl ketone and methacrolein (MVK+MAC) using PTR-(TOF)-MS at this site. A study-average relative contribution of 85% for MVK+MAC and 15% for HMPR was determined. The sum of monoterpenes measured by PTR-MS and PTR-TOF-MS was generally 20-25% higher than the sum of speciated monoterpenes measured by TOGA, which included α-pinene, β-pinene, camphene, carene, myrcene, limonene, cineole as well as other terpenes. However, this difference is consistent throughout the study, and likely

  17. An FPGA Architecture for Extracting Real-Time Zernike Coefficients from Measured Phase Gradients

    NASA Astrophysics Data System (ADS)

    Moser, Steven; Lee, Peter; Podoleanu, Adrian

    2015-04-01

    Zernike modes are commonly used in adaptive optics systems to represent optical wavefronts. However, real-time calculation of Zernike modes is time consuming due to two factors: the large factorial components in the radial polynomials used to define them and the large inverse matrix calculation needed for the linear fit. This paper presents an efficient parallel method for calculating Zernike coefficients from phase gradients produced by a Shack-Hartman sensor and its real-time implementation using an FPGA by pre-calculation and storage of subsections of the large inverse matrix. The architecture exploits symmetries within the Zernike modes to achieve a significant reduction in memory requirements and a speed-up of 2.9 when compared to published results utilising a 2D-FFT method for a grid size of 8×8. Analysis of processor element internal word length requirements show that 24-bit precision in precalculated values of the Zernike mode partial derivatives ensures less than 0.5% error per Zernike coefficient and an overall error of <1%. The design has been synthesized on a Xilinx Spartan-6 XC6SLX45 FPGA. The resource utilisation on this device is <3% of slice registers, <15% of slice LUTs, and approximately 48% of available DSP blocks independent of the Shack-Hartmann grid size. Block RAM usage is <16% for Shack-Hartmann grid sizes up to 32×32.

  18. Interaction of on-site and near real time measured turbidity and enzyme activity in stream water.

    NASA Astrophysics Data System (ADS)

    Stadler, Philipp; Farnleitner, Andreas H.; Zessner, Matthias

    2013-04-01

    On-site and on-line systems that provide an integrated surveillance of physicochemical and microbiological parameters gain significance in water quality monitoring. Particular relating to diffuse pollution from agricultural areas and use-orientated protection of waters the detection of faecal pollution is a fundamental part. For the near real time and on-site detection of microbiological faecal pollution of water, the beta-D- Glucuronidase (GLUC) enzymatic activity has been suggested as a surrogate parameter. Due to possible short measure intervals of three hours, this method has high potential as a water quality monitoring tool. While cultivation based standard determination takes more than one working day (Cabral 2010) the potential advantage of detecting the GLUC activity is the high temporal measuring resolution. Yet, there is still a big gap of knowledge on the sensitivity and specificity concerning the faecal indication capacity of GLUC in relation to standard assays (Cabral 2010). Interference effects of physicochemical parameters on the enzymatic activity respectively fluorescence have been discussed (Molina-Munoz et al. 2007; Tryland and Fiksdal 1998, Biswal et al. 2003). Results from a monitoring of a rivulet in an agricultural catchment in Lower Austria (HOAL - Hydrological Open Air Laboratory) are presented here. The HOAL offers technical resources that allow measurements at high temporal and spatial resolution and to apply various hydrological methods in one catchment. Two automated enzymatic measuring devices (Coliguard, mbOnline, Austria) and physicochemical in-stream measurements are used, as well as in-stream spectroscopy (spectrolyser, s::can, Austria). Accuracy of both enzymatic measuring devices is compared through diverse hydrological and seasonal conditions. Reference analyses by cultivation based determination were performed. Data from Coliguard devices is combined with physicochemical and spectroscopy data to gain information about the

  19. Gold nanoclusters-Cu(2+) ensemble-based fluorescence turn-on and real-time assay for acetylcholinesterase activity and inhibitor screening.

    PubMed

    Sun, Jian; Yang, Xiurong

    2015-12-15

    Based on the specific binding of Cu(2+) ions to the 11-mercaptoundecanoic acid (11-MUA)-protected AuNCs with intense orange-red emission, we have proposed and constructed a novel fluorescent nanomaterials-metal ions ensemble at a nonfluorescence off-state. Subsequently, an AuNCs@11-MUA-Cu(2+) ensemble-based fluorescent chemosensor, which is amenable to convenient, sensitive, selective, turn-on and real-time assay of acetylcholinesterase (AChE), could be developed by using acetylthiocholine (ATCh) as the substrate. Herein, the sensing ensemble solution exhibits a marvelous fluorescent enhancement in the presence of AChE and ATCh, where AChE hydrolyzes its active substrate ATCh into thiocholine (TCh), and then TCh captures Cu(2+) from the ensemble, accompanied by the conversion from fluorescence off-state to on-state of the AuNCs. The AChE activity could be detected less than 0.05 mU/mL within a good linear range from 0.05 to 2.5 mU/mL. Our proposed fluorescence assay can be utilized to evaluate the AChE activity quantitatively in real biological sample, and furthermore to screen the inhibitor of AChE. As far as we know, the present study has reported the first analytical proposal for sensing AChE activity in real time by using a fluorescent nanomaterials-Cu(2+) ensemble or focusing on the Cu(2+)-triggered fluorescence quenching/recovery. This strategy paves a new avenue for exploring the biosensing applications of fluorescent AuNCs, and presents the prospect of AuNCs@11-MUA-Cu(2+) ensemble as versatile enzyme activity assay platforms by means of other appropriate substrates/analytes. PMID:26141104

  20. A luminescent assay for real-time measurements of receptor endocytosis in living cells.

    PubMed

    Robers, Matthew B; Binkowski, Brock F; Cong, Mei; Zimprich, Chad; Corona, Cesear; McDougall, Mark; Otto, George; Eggers, Christopher T; Hartnett, Jim; Machleidt, Thomas; Fan, Frank; Wood, Keith V

    2015-11-15

    Ligand-mediated endocytosis is a key autoregulatory mechanism governing the duration and intensity of signals emanating from cell surface receptors. Due to the mechanistic complexity of endocytosis and its emerging relevance in disease, simple methods capable of tracking this dynamic process in cells have become increasingly desirable. We have developed a bioluminescent reporter technology for real-time analysis of ligand-mediated receptor endocytosis using genetic fusions of NanoLuc luciferase with various G-protein-coupled receptors (GPCRs). This method is compatible with standard microplate formats, which should decrease work flows for high-throughput screens. This article also describes the application of this technology to endocytosis of epidermal growth factor receptor (EGFR), demonstrating potential applicability of the method beyond GPCRs.

  1. Real-time measurement of ice growth during simulated and natural icing conditions using ultrasonic pulse-echo techniques

    NASA Technical Reports Server (NTRS)

    Hansman, R. J., Jr.; Kirby, M. S.

    1986-01-01

    Results of tests to measure ice accretion in real-time using ultrasonic pulse-echo techniques are presented. Tests conducted on a 10.2 cm diameter cylinder exposed to simulated icing conditions in the NASA Lewis Icing Research Tunnel and on an 11.4 cm diameter cylinder exposed to natural icing conditions in flight are described. An accuracy of + or - 0.5 mm is achieved for real-time ice thickness measurements. Ice accretion rate is determined by differentiating ice thickness with respect to time. Icing rates measured during simulated and natural icing conditions are compared and related to icing cloud parameters. The ultrasonic signal characteristics are used to detect the presence of surface water on the accreting ice shape and thus to distinguish between dry ice growth and wet growth. The surface roughness of the accreted ice is shown to be related to the width of the echo signal received from the ice surface.

  2. Recent development status of the quasi real-time crustal deformation monitoring based on the onshore real-time GNSS data and offshore GNSS/Acoustic measurement in Japan

    NASA Astrophysics Data System (ADS)

    Ohta, Y.; Hino, R.; Kido, M.; Imano, M.; Kawamoto, S.; Sato, Y.; Takahashi, N.

    2015-12-01

    The 2011 Tohoku-Oki earthquake and its associated tsunami clearly showed the need for an accurate tsunami early warning system. Real-time GNSS data have an advantage over the short-time seismograms because robust estimations of location and dimension of coseismic faults can be derived from spatial patterns of permanent coseismic displacement measured by real-time GNSS data. Based on these backgrounds, GSI and Tohoku University has been developed the real-time GNSS analysis system. GSI named this system as REGARD (real-time GEONET Analysis for Rapid Deformation Monitoring), which consists three subsystems: (1) Real-time GPS positioning for all of the GEONET site in every one second, (2) automated extraction of displacement fields due to the large earthquake, and (3) automated estimation of Mw by an approximated single rectangular fault or slip distribution in the assumed plated interface. In contrast, lack of the geodetic observation in the offshore region should cause the resolution degrading of the coseismic fault estimation or coseismic slip distribution. In fact, GNSS/Acoustic (GNSS/A) geodetic measurements have revealed the unexpectedly large extent of the 2011 Tohoku-Oki earthquake rupture near the Japan Trench (e.g., Kido et al. 2011). To reveal the earthquake mechanisms and occurrence, as well as co- and post-seismic behaviours, the observation of seafloor crustal deformation in the offshore region is very important. Thus, we are now developing a continuous horizontal and vertical crustal deformation and tsunami observation system based on the moored buoy by a slack cable. This system measures the horizontal and vertical coseismic displacement just after the large earthquake deduced from GNSS/Acoustic measurement and ocean bottom pressure measurement, respectively (Takahashi et al., 2014, 2015). We will introduce the current development status of the quasi real-time crustal deformation monitoring deduced from these onshore and offshore systems based on the

  3. Rapid detection of the factor V Leiden (1691 G > A) and haemochromatosis (845 G > A) mutation by fluorescence resonance energy transfer (FRET) and real time PCR.

    PubMed Central

    Neoh, S H; Brisco, M J; Firgaira, F A; Trainor, K J; Turner, D R; Morley, A A

    1999-01-01

    A rapid method based on fluorescence resonance energy transfer (FRET) and real time polymerase chain reaction (PCR) was used to identify the haemochromatosis genotype in 112 individuals and the factor V genotype in 134 individuals. The results were compared with conventional methods based on restriction enzyme digestion of PCR products. The two methods agreed in 244 of the 246 individuals; for the other two individuals, sequencing showed that they had been incorrectly genotyped by the standard method but correctly genotyped by FRET. The simplicity, speed, and accuracy of real time PCR analysis using FRET probes make it the method of choice in the clinical laboratory for genotyping the haemochromatosis and factor V genes. PMID:10674036

  4. The "dual-spot" Aethalometer: an improved measurement of aerosol black carbon with real-time loading compensation

    NASA Astrophysics Data System (ADS)

    Drinovec, L.; Močnik, G.; Zotter, P.; Prévôt, A. S. H.; Ruckstuhl, C.; Coz, E.; Rupakheti, M.; Sciare, J.; Müller, T.; Wiedensohler, A.; Hansen, A. D. A.

    2014-09-01

    Aerosol black carbon is a unique primary tracer for combustion emissions. It affects the optical properties of the atmosphere and is recognized as the second most important anthropogenic forcing agent for climate change. It is the primary tracer for adverse health effects caused by air pollution. For the accurate determination of mass equivalent black carbon concentrations in the air and for source apportionment of the concentrations, optical measurements by filter-based absorption photometers must take into account the "filter loading effect". We present a new real-time loading effect compensation algorithm based on a two parallel spot measurement of optical absorption. This algorithm has been incorporated into the new Aethalometer model AE33. Intercomparison studies show excellent reproducibility of the AE33 measurements and very good agreement with post-processed data obtained using earlier Aethalometer models, and other filter-based absorption photometers. The real-time loading effect compensation algorithm provides the high-quality data necessary for real-time source apportionment, and for determination of the temporal variation of the compensation parameter k.

  5. The "dual-spot" Aethalometer: an improved measurement of aerosol black carbon with real-time loading compensation

    NASA Astrophysics Data System (ADS)

    Drinovec, L.; Močnik, G.; Zotter, P.; Prévôt, A. S. H.; Ruckstuhl, C.; Coz, E.; Rupakheti, M.; Sciare, J.; Müller, T.; Wiedensohler, A.; Hansen, A. D. A.

    2015-05-01

    Aerosol black carbon is a unique primary tracer for combustion emissions. It affects the optical properties of the atmosphere and is recognized as the second most important anthropogenic forcing agent for climate change. It is the primary tracer for adverse health effects caused by air pollution. For the accurate determination of mass equivalent black carbon concentrations in the air and for source apportionment of the concentrations, optical measurements by filter-based absorption photometers must take into account the "filter loading effect". We present a new real-time loading effect compensation algorithm based on a two parallel spot measurement of optical absorption. This algorithm has been incorporated into the new Aethalometer model AE33. Intercomparison studies show excellent reproducibility of the AE33 measurements and very good agreement with post-processed data obtained using earlier Aethalometer models and other filter-based absorption photometers. The real-time loading effect compensation algorithm provides the high-quality data necessary for real-time source apportionment and for determination of the temporal variation of the compensation parameter k.

  6. Biocompatible Green and Red Fluorescent Organic Dots with Remarkably Large Two-Photon Action Cross Sections for Targeted Cellular Imaging and Real-Time Intravital Blood Vascular Visualization.

    PubMed

    Xiang, Jiayun; Cai, Xiaolei; Lou, Xiaoding; Feng, Guangxue; Min, Xuehong; Luo, Wenwen; He, Bairong; Goh, Chi Ching; Ng, Lai Guan; Zhou, Jian; Zhao, Zujin; Liu, Bin; Tang, Ben Zhong

    2015-07-15

    Fluorescent organic dots are emerging as promising bioimaging reagents because of their high brightness, good photostability, excellent biocompatibility, and facile surface functionalization. Organic dots with large two-photon absorption (TPA) cross sections are highly desired for two-photon fluorescence microscopy. In this work, we report two biocompatible and photostable organic dots fabricated by encapsulating tetraphenylethene derivatives within DSPE-PEG matrix. The two organic dots show absorption maxima at 425 and 483 nm and emit green and red fluorescence at 560 and 645 nm, with high fluorescence quantum yields of 64% and 22%, respectively. Both organic dots exhibit excellent TPA property in the range of 800-960 nm, affording upon excitation at 820 nm remarkably large TPA cross sections of 1.2×10(6) and 2.5×10(6) GM on the basis of dot concentration. The bare fluorophores and their organic dots are biocompatible and have been used to stain living cells for one- and two-photon fluorescence bioimagings. The cRGD-modified organic dots can selectively target integrin αvβ3 overexpressing breast cancer cells for targeted imaging. The organic dots are also applied for real-time two-photon fluorescence in vivo visualization of the blood vasculature of mouse ear, providing the spatiotemporal information about the whole blood vascular network. These results demonstrate that the present fluorescent organic dots are promising candidates for living cell and tissue imaging.

  7. Real-time Measurement of Biomagnetic Vector Fields in Functional Syncytium Using Amorphous Metal

    NASA Astrophysics Data System (ADS)

    Nakayama, Shinsuke; Uchiyama, Tusyoshi

    2015-03-01

    Magnetic field detection of biological electric activities would provide a non-invasive and aseptic estimate of the functional state of cellular organization, namely a syncytium constructed with cell-to-cell electric coupling. In this study, we investigated the properties of biomagnetic waves which occur spontaneously in gut musculature as a typical functional syncytium, by applying an amorphous metal-based gradio-magneto sensor operated at ambient temperature without a magnetic shield. The performance of differentiation was improved by using a single amorphous wire with a pair of transducer coils. Biomagnetic waves of up to several nT were recorded ~1 mm below the sample in a real-time manner. Tetraethyl ammonium (TEA) facilitated magnetic waves reflected electric activity in smooth muscle. The direction of magnetic waves altered depending on the relative angle of the muscle layer and magneto sensor, indicating the existence of propagating intercellular currents. The magnitude of magnetic waves rapidly decreased to ~30% by the initial and subsequent 1 mm separations between sample and sensor. The large distance effect was attributed to the feature of bioelectric circuits constructed by two reverse currents separated by a small distance. This study provides a method for detecting characteristic features of biomagnetic fields arising from a syncytial current.

  8. Real time: Automatic vehicle potential determination from ESA measurements. Part 1. The count ratio algorithm

    NASA Astrophysics Data System (ADS)

    Spiegel, S. L.; Saistrick, R. J.; Saflekos, N. A.; Gussenhoven, M. S.; Cohen, H. A.

    1985-05-01

    The problem of spacecraft charging at high altitudes is an important one for Air Force applications; indeed a major effort (SCATHA Project) has been undertaken to understand this phenomenon. Quite simply, when a space vehicle at geosynchronous orbit, interacting with its plasma environment, acquires a high negative potential (of the order of 1/2 kV), it is possible that onboard instrumentation will be damaged by electrical discharge between differentially charged surfaces of the spacecraft. Thus it is important to activate a discharge mechanism as soon as a dangerously high potential develops. This means it is necessay to have a reliable method of determining the real time vehicle potential, or more specifically, distinguishing whether or not the potential has reached or exceeded critical levels. An algorithm incorporating an onboard microprocessor to analyze data obtained by the vehicle, and determine the extent of charging, is desirable. Computational simplicity and speed are important considerations in the design of such an algorithm. Examination of data from the P78-2 satellite has indicated that electrostatic analyzer (ESA) ion count data, could serve as input to an algorithm designed to fulfill the aforementioned objectives. The development and testing of one such algorithm, referred to as the count ration algorithm, are described.

  9. The Real-Time Dose Measurement Scintillating Fiber Array for Brachytherapy Procedures

    NASA Astrophysics Data System (ADS)

    Tynes, Lawrence

    2007-03-01

    Brachytherapy is a treatment modality that uses tiny radioactive sources (few mm in length) by delivering enough doses to kill cancer tumors or plaque build-up. The type of sources used in hospitals include both gamma and beta emitters. Presently, the technique suffers from not having a single detector with the capability of providing accurate dose distribution information within sub-mm accuracy. The current standard is based primarily on well chambers and film dosimetry. The Center for Advanced Medical Instrumentation (CAMI) at Hampton University is developing a Scintillating Fiber Based Beta Detector prototype in collaboration with the National Institute for Standards and Technology (NIST) to address this problem. The device is composed of an array of 1x1 mm^2 scintillating fibers optically coupled to photo-multiplier tubes for photon-to-current conversion. A CAMAC LabView based data acquisition system is used for real time data collection and histogramming, data analysis. A set of data were collected at the nearby Bon Secours DePaul Medical Center using a GammaMed 12i HDR after-loader housing a 6.62 mCi Ir-192 source. Preliminary comparison between our device and film dosimetry will be discussed.

  10. Real-time Measurement of Mechanical Fluctuations in Carbon Nanotube Resonators

    NASA Astrophysics Data System (ADS)

    Tsioutsios, Ioannis; Tavernarakis, Alexandros; Osmond, Johann; Verlot, Pierre; Bachtold, Adrian

    Carbon nanotube resonators have been recently shown to hold an exceptional sensing potential, relying on their extremely low mass. As a consequence, they are also expected to transduce the fundamental thermal force into very large motion fluctuations. Recently, an increasing number of theoretical proposals have suggested that this property may strongly affect the vibrational behaviour of carbon nanotube resonators, which has so far remained unobserved. Here we report the first, real-time detection of the thermally-induced vibrations in carbon nanotube resonators with masses in the 10 ag range. We show that coupling singly-clamped carbon nanotubes to a focused electron beam enables the full access to their mechanical trajectories. Our detailed analysis demonstrates that our devices behave as linear harmonic oscillators undergoing thermally-driven Brownian motion. Our result establish the viability of carbon nanotube resonator technology at room temperature and paves the way towards the observing novel thermodynamics regimes in nanomechanics. ICFO, Institut de Ciències Fotòniques, Mediterranean Technology Park, 08860 Castelldefels, Barcelona, Spain.

  11. Real-time measurement of biomagnetic vector fields in functional syncytium using amorphous metal.

    PubMed

    Nakayama, Shinsuke; Uchiyama, Tusyoshi

    2015-01-01

    Magnetic field detection of biological electric activities would provide a non-invasive and aseptic estimate of the functional state of cellular organization, namely a syncytium constructed with cell-to-cell electric coupling. In this study, we investigated the properties of biomagnetic waves which occur spontaneously in gut musculature as a typical functional syncytium, by applying an amorphous metal-based gradio-magneto sensor operated at ambient temperature without a magnetic shield. The performance of differentiation was improved by using a single amorphous wire with a pair of transducer coils. Biomagnetic waves of up to several nT were recorded ~1 mm below the sample in a real-time manner. Tetraethyl ammonium (TEA) facilitated magnetic waves reflected electric activity in smooth muscle. The direction of magnetic waves altered depending on the relative angle of the muscle layer and magneto sensor, indicating the existence of propagating intercellular currents. The magnitude of magnetic waves rapidly decreased to ~30% by the initial and subsequent 1 mm separations between sample and sensor. The large distance effect was attributed to the feature of bioelectric circuits constructed by two reverse currents separated by a small distance. This study provides a method for detecting characteristic features of biomagnetic fields arising from a syncytial current. PMID:25744476

  12. Real-time measurements of crystallization processes in viscoelastic polymeric photonic crystals

    NASA Astrophysics Data System (ADS)

    Snoswell, David R. E.; Finlayson, Chris E.; Zhao, Qibin; Baumberg, Jeremy J.

    2015-11-01

    We present a study of the dynamic shear ordering of viscoelastic photonic crystals, based on core-shell polymeric composite particles. Using an adapted shear-cell arrangement, the crystalline ordering of the material under conditions of oscillatory shear is interrogated in real time, through both video imaging and from the optical transmission spectra of the cell. In order to gain a deeper understanding of the macroscopic influences of shear on the crystallization process in this solvent-free system, the development of bulk ordering is studied as a function of the key parameters including duty cycle and shear-strain magnitude. In particular, optimal ordering is observed from a prerandomized sample at shear strains of around 160%, for 1-Hz oscillations. This ordering reaches completion over time scales of order 10 s. These observations suggest significant local strains are needed to drive nanoparticles through energy barriers, and that local creep is needed to break temporal symmetry in such high-viscosity nanoassemblies. Crystal shear-melting effects are also characterized under conditions of constant shear rate. These quantitative experiments aim to stimulate the development of theoretical models which can deal with the strong local particle interactions in this system.

  13. Real-time Measurement of Biomagnetic Vector Fields in Functional Syncytium Using Amorphous Metal

    PubMed Central

    Nakayama, Shinsuke; Uchiyama, Tusyoshi

    2015-01-01

    Magnetic field detection of biological electric activities would provide a non-invasive and aseptic estimate of the functional state of cellular organization, namely a syncytium constructed with cell-to-cell electric coupling. In this study, we investigated the properties of biomagnetic waves which occur spontaneously in gut musculature as a typical functional syncytium, by applying an amorphous metal-based gradio-magneto sensor operated at ambient temperature without a magnetic shield. The performance of differentiation was improved by using a single amorphous wire with a pair of transducer coils. Biomagnetic waves of up to several nT were recorded ~1 mm below the sample in a real-time manner. Tetraethyl ammonium (TEA) facilitated magnetic waves reflected electric activity in smooth muscle. The direction of magnetic waves altered depending on the relative angle of the muscle layer and magneto sensor, indicating the existence of propagating intercellular currents. The magnitude of magnetic waves rapidly decreased to ~30% by the initial and subsequent 1 mm separations between sample and sensor. The large distance effect was attributed to the feature of bioelectric circuits constructed by two reverse currents separated by a small distance. This study provides a method for detecting characteristic features of biomagnetic fields arising from a syncytial current. PMID:25744476

  14. Real-time automated thickness measurement of the in vivo human tympanic membrane using optical coherence tomography

    PubMed Central

    Hubler, Zita; Shemonski, Nathan D.; Shelton, Ryan L.; Monroy, Guillermo L.; Nolan, Ryan M.

    2015-01-01

    Background Otitis media (OM), an infection in the middle ear, is extremely common in the pediatric population. Current gold-standard methods for diagnosis include otoscopy for visualizing the surface features of the tympanic membrane (TM) and making qualitative assessments to determine middle ear content. OM typically presents as an acute infection, but can progress to chronic OM, and after numerous infections and antibiotic treatments over the course of many months, this disease is often treated by surgically inserting small tubes in the TM to relieve pressure, enable drainage, and provide aeration to the middle ear. Diagnosis and monitoring of OM is critical for successful management, but remains largely qualitative. Methods We have developed an optical coherence tomography (OCT) system for high-resolution, depth-resolved, cross-sectional imaging of the TM and middle ear content, and for the quantitative assessment of in vivo TM thickness including the presence or absence of a middle ear biofilm. A novel algorithm was developed and demonstrated for automatic, real-time, and accurate measurement of TM thickness to aid in the diagnosis and monitoring of OM and other middle ear conditions. The segmentation algorithm applies a Hough transform to the OCT image data to determine the boundaries of the TM to calculate thickness. Results The use of OCT and this segmentation algorithm is demonstrated first on layered phantoms and then during real-time acquisition of in vivo OCT from humans. For the layered phantoms, measured thicknesses varied by approximately 5 µm over time in the presence of large axial and rotational motion. In vivo data also demonstrated differences in thicknesses both spatially on a single TM, and across normal, acute, and chronic OM cases. Conclusions Real-time segmentation and thickness measurements of image data from both healthy subjects and those with acute and chronic OM demonstrate the use of OCT and this algorithm as a robust, quantitative

  15. Benchmarking flood models from space in near real-time: accommodating SRTM height measurement errors with low resolution flood imagery

    NASA Astrophysics Data System (ADS)

    Schumann, G.; di Baldassarre, G.; Alsdorf, D.; Bates, P. D.

    2009-04-01

    In February 2000, the Shuttle Radar Topography Mission (SRTM) measured the elevation of most of the Earth's surface with spatially continuous sampling and an absolute vertical accuracy greater than 9 m. The vertical error has been shown to change with topographic complexity, being less important over flat terrain. This allows water surface slopes to be measured and associated discharge volumes to be estimated for open channels in large basins, such as the Amazon. Building on these capabilities, this paper demonstrates that near real-time coarse resolution radar imagery of a recent flood event on a 98 km reach of the River Po (Northern Italy) combined with SRTM terrain height data leads to a water slope remarkably similar to that derived by combining the radar image with highly accurate airborne laser altimetry. Moreover, it is shown that this space-borne flood wave approximation compares well to a hydraulic model and thus allows the performance of the latter, calibrated on a previous event, to be assessed when applied to an event of different magnitude in near real-time. These results are not only of great importance to real-time flood management and flood forecasting but also support the upcoming Surface Water and Ocean Topography (SWOT) mission that will routinely provide water levels and slopes with higher precision around the globe.

  16. Near-real-time trace element measurements in a rural, traffic-influenced environment with some fireworks

    NASA Astrophysics Data System (ADS)

    Furger, Markus; Slowik, Jay G.; Cruz Minguillón, María; Hueglin, Christoph; Koch, Chris; Prévôt, André S. H.; Baltensperger, Urs

    2016-04-01

    Aerosol-bound trace elements can affect the environment in significant ways especially when they are toxic. Characterizing the trace element spatial and temporal variability is a prerequisite for human exposure studies. The requirement for high time resolution and consequently the low sample masses asked for analysis methods not easily accessible, such as synchrotron radiation-induced X-ray fluorescence spectrometry (SR-XRF). In recent years, instrumentation that samples and analyzes airborne particulate matter with time resolutions of less than an hour in near real time has entered the market. We present the results of a three-week campaign in a rural environment close to a freeway. The measurement period included the fireworks of the Swiss National Day. The XRF instrument was set up at the monitoring station Härkingen of the Swiss Monitoring Network for Air Pollution (NABEL). It was configured to sample and analyze ambient PM10 aerosols in 1-hour intervals. Sample analysis with XRF was performed by the instrument immediately after collection, i.e. during the next sampling interval. 24 elements were analyzed and quantified (Si, S, Cl, K, Ca, Ti, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, As, Se, Cd, Sn, Sb, Ba, Pt, Hg, Pb, Bi). The element concentrations obtained by the XRF instrument were compared to those determined by ICP-AES and ICP-MS in PM10 samples collected by NABEL high volume samplers. The results demonstrate the capability of the instrument to measure over a wide range of concentrations, from a few ng m‑3 to μg m‑3, under ambient conditions. The time resolution allows for the characterization of diurnal variations of element concentrations, which provides information on the contribution of emission sources, such as road traffic, soil, or fireworks. Some elements (V, Co, As, Pt) were below their detection limit during most of the time, but As could be quantified during the fireworks. Transition metals Cr, Mn, Fe, Cu, Zn could be attributed to freeway traffic

  17. Near-real-time trace element measurements in a rural, traffic-influenced environment with some fireworks

    NASA Astrophysics Data System (ADS)

    Furger, Markus; Slowik, Jay G.; Cruz Minguillón, María; Hueglin, Christoph; Koch, Chris; Prévôt, André S. H.; Baltensperger, Urs

    2016-04-01

    Aerosol-bound trace elements can affect the environment in significant ways especially when they are toxic. Characterizing the trace element spatial and temporal variability is a prerequisite for human exposure studies. The requirement for high time resolution and consequently the low sample masses asked for analysis methods not easily accessible, such as synchrotron radiation-induced X-ray fluorescence spectrometry (SR-XRF). In recent years, instrumentation that samples and analyzes airborne particulate matter with time resolutions of less than an hour in near real time has entered the market. We present the results of a three-week campaign in a rural environment close to a freeway. The measurement period included the fireworks of the Swiss National Day. The XRF instrument was set up at the monitoring station Härkingen of the Swiss Monitoring Network for Air Pollution (NABEL). It was configured to sample and analyze ambient PM10 aerosols in 1-hour intervals. Sample analysis with XRF was performed by the instrument immediately after collection, i.e. during the next sampling interval. 24 elements were analyzed and quantified (Si, S, Cl, K, Ca, Ti, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, As, Se, Cd, Sn, Sb, Ba, Pt, Hg, Pb, Bi). The element concentrations obtained by the XRF instrument were compared to those determined by ICP-AES and ICP-MS in PM10 samples collected by NABEL high volume samplers. The results demonstrate the capability of the instrument to measure over a wide range of concentrations, from a few ng m-3 to μg m-3, under ambient conditions. The time resolution allows for the characterization of diurnal variations of element concentrations, which provides information on the contribution of emission sources, such as road traffic, soil, or fireworks. Some elements (V, Co, As, Pt) were below their detection limit during most of the time, but As could be quantified during the fireworks. Transition metals Cr, Mn, Fe, Cu, Zn could be attributed to freeway traffic. K, S

  18. Real-Time PCR

    NASA Astrophysics Data System (ADS)

    Evrard, A.; Boulle, N.; Lutfalla, G. S.

    Over the past few years there has been a considerable development of DNA amplification by polymerase chain reaction (PCR), and real-time PCR has now superseded conventional PCR techniques in many areas, e.g., the quantification of nucleic acids and genotyping. This new approach is based on the detection and quantification of a fluorescent signal proportional to the amount of amplicons generated by PCR. Real-time detection is achieved by coupling a thermocycler with a fluorimeter. This chapter discusses the general principles of quantitative real-time PCR, the different steps involved in implementing the technique, and some examples of applications in medicine. The polymerase chain reaction (PCR) provides a way of obtaining a large number of copies of a double-stranded DNA fragment of known sequence. This DNA amplification technique, developed in 1985 by K. Mullis (Cetus Corporation), saw a spectacular development over the space of a few years, revolutionising the methods used up to then in molecular biology. Indeed, PCR has many applications, such as the detection of small amounts of DNA, cloning, and quantitative analysis (assaying), each of which will be discussed further below.

  19. REAL-TIME IN-SITU MEASUREMENT OF MATERIAL ELASTIC PROPERTIES IN A HIGH GAMMA IRRADIATION ENVIRONMENT

    SciTech Connect

    Ken Telschow; Rob Schley; Dave Cottle

    2006-05-01

    The first measurements of elastic vibrations of an object in-situ to a high gamma irradiation field using a laser coupled resonant ultrasound method are described. A vibration mode of an Inconel hollow capped cylinder was measured throughout a period of 170 hours as the gamma radiation field was increased to 104 Gray/hour. The vibration mode frequency was observed to change in a manner consistent with the temperature dependence of the elastic stiffness coefficients of the material. These results illustrate the efficacy of the laser approach for real-time resonant ultrasound measurements in this severely hostile nuclear environment.

  20. Near real-time measurement of forces applied by an optical trap to a rigid cylindrical object

    NASA Astrophysics Data System (ADS)

    Glaser, Joseph; Hoeprich, David; Resnick, Andrew

    2014-07-01

    An automated data acquisition and processing system is established to measure the force applied by an optical trap to an object of unknown composition in real time. Optical traps have been in use for the past 40 years to manipulate microscopic particles, but the magnitude of applied force is often unknown and requires extensive instrument characterization. Measuring or calculating the force applied by an optical trap to nonspherical particles presents additional difficulties which are also overcome with our system. Extensive experiments and measurements using well-characterized objects were performed to verify the system performance.

  1. REAL-TIME IN SITU DETECTION OF ORGANIC CONTAMINANTS BY LASER-INDUCED FLUORESCENCE SYSTEM. Final tropical report (Task 1.3).

    SciTech Connect

    Daniel J. Stepan; James A. Sorensen; Jaroslav Solc

    1999-08-01

    This report summarizes the results of the field demonstration of a laser-induced fluorescence (LIF) method for characterization of brownfields and other contaminated sites. The technology was provided and demonstrated by Dakota Technologies, Inc. (DTI), of Fargo, North Dakota. LIF generates continuous data on the distribution of polycyclic aromatic hydrocarbons (PAHs) within the soil profile. The sensor used to record real-time data is deployed into the soil using a modified truck-mounted Geoprobe percussion soil probing device. The summary of observations described in the following text represents an independent evaluation of the performance, usefulness, and economics of the demonstrated technology for characterization at PAH-contaminated sites.

  2. Large detector array and real-time processing and elemental image projection of X-ray and proton microprobe fluorescence data

    NASA Astrophysics Data System (ADS)

    Ryan, C. G.; Siddons, D. P.; Moorhead, G.; Kirkham, R.; Dunn, P. A.; Dragone, A.; De Geronimo, G.

    2007-07-01

    A detector concept is described that integrates a large solid-angle detector array developed at Brookhaven National Laboratory and a high speed pipelined parallel processing engine developed at CSIRO for machine vision, with an embedded implementation of the Dynamic Analysis method for fluorescence spectra deconvolution and image projection, to yield a detection system capable of energy-dispersive detection, spectral deconvolution and real-time elemental imaging at ˜10 8 events per second for PIXE elemental imaging using the nuclear microprobe and SXRF elemental imaging using the synchrotron X-ray microprobe.

  3. To what extent can portable fluorescence spectroscopy be used in the real-time assessment of microbial water quality?

    NASA Astrophysics Data System (ADS)

    Baker, Andy; Bradley, Chris; Buckley, Chris; Cumberland, Sue; Bridgeman, John

    2015-04-01

    The intrinsic fluorescence of aquatic organic matter emitted at 350 nm when excited at 280 nm is observed to correlate widely with water quality parameters such as biochemical oxygen demand. In sewage-impacted rivers, it might be expected that fluorescence at these wavelengths will also correlate with the microbial water quality. Here, we use a portable fluorimeter to assess the relationship between fluorescence intensity at this wavelength pair and Escherichia Coli enumeration in contrasting river catchments of poor water quality (in KwaZulu-Natal, S. Africa and the West Midlands, UK). Across all catchments we demonstrate a log correlation (r=0.76) between fluorescence intensity and Escherichia Coli over a seven-log range in Escherichia Coli enumerations. Within specific catchments, the relationship between fluorescence intensity and Escherichia Coli is more variable, demonstrating that catchment-specific interferences are also important. Our research demonstrates the potential use of a portable fluorimeter as a screening tool for microbial water quality, and one which is ideally suited to simple pollution scenarios such as assessing the impact of untreated sewage at specific sites.

  4. To what extent can portable fluorescence spectroscopy be used in the real-time assessment of microbial water quality?

    PubMed

    Baker, Andy; Cumberland, Susan A; Bradley, Chris; Buckley, Chris; Bridgeman, John

    2015-11-01

    The intrinsic fluorescence of aquatic organic matter emitted at 350 nm when excited at 280 nm correlates widely with water quality parameters such as biochemical oxygen demand. Hence, in sewage-impacted rivers and groundwater, it might be expected that fluorescence at these wavelengths will also correlate with the microbial water quality. In this paper we use a portable fluorimeter to assess the relationship between fluorescence intensity at this wavelength pair and Escherichia coli enumeration in contrasting river catchments of poor water quality: in KwaZulu-Natal, S. Africa and the West Midlands, UK. Across all catchments we demonstrate a log correlation (r = 0.74) between fluorescence intensity and E. coli over a seven-log range in E. coli enumerations on non-perturbed (unfiltered) samples. Within specific catchments, the relationship between fluorescence intensity and E. coli is more variable, demonstrating the importance of catchment-specific interference. Our research demonstrates the potential of using a portable fluorimeter as an initial screening tool for indicative microbial water quality, and one that is ideally suited to simple pollution scenarios such as assessing the impact of faecal contamination in river or groundwater at specific sites.

  5. Evaluation of HER2 Gene Status in Breast Cancer Samples with Indeterminate Fluorescence in Situ Hybridization by Quantitative Real-Time PCR.

    PubMed

    Koudelakova, Vladimira; Berkovcova, Jitka; Trojanec, Radek; Vrbkova, Jana; Radova, Lenka; Ehrmann, Jiri; Kolar, Zdenek; Melichar, Bohuslav; Hajduch, Marian

    2015-07-01

    Administration of drugs targeting HER2 (official symbol ERBB2) is an important component of therapy for breast cancer patients with HER2 amplification/overexpression as determined by in situ hybridization (ISH) and immunohistochemistry (IHC). In approximately 5% of breast cancers, ISH assays fail. In these cases, HER2 protein expression is evaluated by IHC alone that may yield false negatives/positives for poor-quality samples. Therefore, we developed a method that was based on quantitative real-time PCR applicable for DNA from formalin-fixed, paraffin-embedded tissue samples. Its limit of detection was determined with breast cancer cell lines and validated with 223 breast cancer patient samples. On the basis of comparisons with fluorescent ISH (FISH) and IHC data, the sensitivity of the new method was 94.2% and 95.1%, its specificity was 100% and 99.1%, and overall concordance between results obtained with the quantitative real-time PCR method and FISH/IHC was 97.6% for both methods. The quantitative real-time PCR method was then used to evaluate the HER2 status of 198 of 3696 breast cancer tissues that yielded indeterminate FISH results. The HER2 copy number was successfully determined in 69.2% of these indeterminate samples. Thus, the DNA-based technique appears to be a specific, sensitive method for determining HER2 copy numbers when the FISH assay fails, which may complement IHC tests. PMID:25956448

  6. Development of a real-time fluorescence loop-mediated isothermal amplification assay for rapid and quantitative detection of Fusarium oxysporum f. sp. niveum in soil.

    PubMed

    Peng, Jun; Zhan, Yuanfeng; Zeng, Fanyun; Long, Haibo; Pei, Yuelin; Guo, Jianrong

    2013-12-01

    Fusarium wilt caused by Fusarium oxysporum f. sp. niveum (Fon) is one of the major limiting factors for watermelon production worldwide. Rapid and accurate detection of the causal pathogen is the cornerstone of integrated disease management. In this paper, a real-time fluorescence loop-mediated isothermal amplification (RealAmp) assay was developed for the rapid and quantitative detection of Fon in soil. Positive products were amplified only from Fon isolates and not from any other species or formae speciales of F. oxysporum tested, showing a high specificity of the primer sets. The detection limit of the RealAmp assay was 1.2 pg μL(-1) genomic DNA or 10(3) spores g(-1) of artificially inoculated soil, whereas real-time PCR could detect as low as 12 fg μL(-1) or 10(2) spores g(-1). The RealAmp assay was further applied to detect eight artificially inoculated and 85 field soil samples. No significant differences were found between the results tested by the RealAmp and real-time PCR assays. The RealAmp assay is a simple, rapid and effective technique for the quantitative detection and monitoring of Fon in soil under natural conditions.

  7. Real-time measurements of nicotinamide adenine dinucleotide in live human trabecular meshwork cells: effects of acute oxidative stress.

    PubMed

    Masihzadeh, Omid; Ammar, David A; Lei, Tim C; Gibson, Emily A; Kahook, Malik Y

    2011-09-01

    The trabecular meshwork (TM) region of the eye is exposed to a constant low-level of oxidative insult. The cumulative damage may be the reason behind age-dependent risk for developing primary open angle glaucoma. Chronic and acute effects of hydrogen peroxide (H(2)O(2)) on TM endothelial cells include changes in viability, protein synthesis, and cellular adhesion. However, little if anything is known about the immediate effect of H(2)O(2) on the biochemistry of the TM cells and the initial response to oxidative stress. In this report, we have used two-photon excitation autofluorescence (2PAF) to monitor changes to TM cell nicotinamide adenine dinucleotide (NADPH). 2PAF allows non-destructive, real-time analysis of concentration of intracellular NADPH. Coupled to reduced glutathione, NADPH, is a major component in the anti-oxidant defense of TM cells. Cultured human TM cells were monitored for over 30 min in control and H(2)O(2)-containing solutions. Peroxide caused both a dose- and time-dependent decrease in NADPH signal. NADPH fluorescence in control and in 4 mM H(2)O(2) solutions showed little attenuation of NADPH signal (4% and 9% respectively). TM cell NADPH fluorescence showed a linear decrease with exposure to 20 mM H(2)O(2) (-29%) and 100 mM H(2)O(2) (37%) after a 30 min exposure. Exposure of TM cells to 500 mM H(2)O(2) caused an exponential decrease in NADPH fluorescence to a final attenuation of 46% of starting intensity. Analysis of individual TM cells indicates that cells with higher initial NADPH fluorescence are more refractive to the apparent loss of viability caused by H(2)O(2) than weakly fluorescing TM cells. We conclude that 2PAF of intracellular NADPH is a valuable tool for studying TM cell metabolism in response to oxidative insult. PMID:21354135

  8. Real-time measurements of nicotinamide adenine dinucleotide in live human trabecular meshwork cells: Effects of acute oxidative stress✩

    PubMed Central

    Masihzadeh, Omid; Ammar, David A.; Lei, Tim C.; Gibson, Emily A.; Kahook, Malik Y.

    2016-01-01

    The trabecular meshwork (TM) region of the eye is exposed to a constant low-level of oxidative insult. The cumulative damage may be the reason behind age-dependent risk for developing primary open angle glaucoma. Chronic and acute effects of hydrogen peroxide (H2O2) on TM endothelial cells include changes in viability, protein synthesis, and cellular adhesion. However, little if anything is known about the immediate effect of H2O2 on the biochemistry of the TM cells and the initial response to oxidative stress. In this report, we have used two-photon excitation autofluorescence (2PAF) to monitor changes to TM cell nicotinamide adenine dinucleotide (NADPH). 2PAF allows non-destructive, real-time analysis of concentration of intracellular NADPH. Coupled to reduced glutathione, NADPH, is a major component in the anti-oxidant defense of TM cells. Cultured human TM cells were monitored for over 30 min in control and H2O2-containing solutions. Peroxide caused both a dose- and time-dependent decrease in NADPH signal. NADPH fluorescence in control and in 4 mM H2O2 solutions showed little attenuation of NADPH signal (4% and 9% respectively). TM cell NADPH fluorescence showed a linear decrease with exposure to 20 mM H2O2 (−29%) and 100 mM H2O2 (37%) after a 30 min exposure. Exposure of TM cells to 500 mM H2O2 caused an exponential decrease in NADPH fluorescence to a final attenuation of 46% of starting intensity. Analysis of individual TM cells indicates that cells with higher initial NADPH fluorescence are more refractive to the apparent loss of viability caused by H2O2 than weakly fluorescing TM cells. We conclude that 2PAF of intracellular NADPH is a valuable tool for studying TM cell metabolism in response to oxidative insult. PMID:21354135

  9. Real-time measurement of Cp2Mg vapor concentration using the non-dispersive infrared spectroscopy

    NASA Astrophysics Data System (ADS)

    Hayashi, D.; Teraoka, A.; Sakaguchi, Y.; Minami, M.; Nishizato, H.

    2016-11-01

    We demonstrated real-time measurement of bis-cyclopentadienyl magnesium (Cp2Mg) vapor concentration by using a non-dispersive infrared (NDIR) spectroscopy. The Cp2Mg concentration was determined by the calibration curve generated through determining the correlation between the Cp2Mg vapor pressure and infrared absorbance at 12.8 μm wavelength, which corresponds to the C-H bending oscillation of the molecule. We measured Cp2Mg vapor concentration in real time generated by a bubbling method where the carrier flow rate was varied in the range of 100-1000 sccm under fixed total pressure and bottle temperature (700 Torr and 30 °C). The overall behavior of measured concentration was almost constant throughout the bubbling time; however a slight concentration decrease of 1.6 ppm was captured due to the reduction of sublimation efficiency. In addition, the measured concentration was as low as 66.6-68.8% of the saturation concentration calculated from saturation vapor pressure of Cp2Mg. The validity of the measured concentration was evaluated by the comparison between the measured bottle weight losses after continuous bubblings and the mass consumptions calculated from the measured concentrations. Good agreements within 5% deviations were obtained, and it was confirmed that proper concentration was provided by the NDIR measurement.

  10. Multispectral real-time fluorescence imaging for intraoperative detection of the sentinel lymph node in gynecologic oncology.

    PubMed

    Crane, Lucia M A; Themelis, George; Buddingh, K Tim; Buddingh, Tim; Harlaar, Niels J; Pleijhuis, Rick G; Sarantopoulos, Athanasios; van der Zee, Ate G J; Ntziachristos, Vasilis; van Dam, Gooitzen M

    2010-10-20

    The prognosis in virtually all solid tumors depends on the presence or absence of lymph node metastases. Surgical treatment most often combines radical excision of the tumor with a full lymphadenectomy in the drainage area of the tumor. However, removal of lymph nodes is associated with increased morbidity due to infection, wound breakdown and lymphedema. As an alternative, the sentinel lymph node procedure (SLN) was developed several decades ago to detect the first draining lymph node from the tumor. In case of lymphogenic dissemination, the SLN is the first lymph node that is affected (Figure 1). Hence, if the SLN does not contain metastases, downstream lymph nodes will also be free from tumor metastases and need not to be removed. The SLN procedure is part of the treatment for many tumor types, like breast cancer and melanoma, but also for cancer of the vulva and cervix. The current standard methodology for SLN-detection is by peritumoral injection of radiocolloid one day prior to surgery, and a colored dye intraoperatively. Disadvantages of the procedure in cervical and vulvar cancer are multiple injections in the genital area, leading to increased psychological distress for the patient, and the use of radioactive colloid. Multispectral fluorescence imaging is an emerging imaging modality that can be applied intraoperatively without the need for injection of radiocolloid. For intraoperative fluorescence imaging, two components are needed: a fluorescent agent and a quantitative optical system for intraoperative imaging. As a fluorophore we have used indocyanine green (ICG). ICG has been used for many decades to assess cardiac function, cerebral perfusion and liver perfusion. It is an inert drug with a safe pharmaco-biological profile. When excited at around 750 nm, it emits light in the near-infrared spectrum around 800 nm. A custom-made multispectral fluorescence imaging camera system was used. The aim of this video article is to demonstrate the detection of

  11. Multispectral Real-time Fluorescence Imaging for Intraoperative Detection of the Sentinel Lymph Node in Gynecologic Oncology

    PubMed Central

    Crane, Lucia M.A.; Themelis, George; Buddingh, K. Tim; Harlaar, Niels J.; Pleijhuis, Rick G.; Sarantopoulos, Athanasios; van der Zee, Ate G.J.; Ntziachristos, Vasilis; van Dam, Gooitzen M.

    2010-01-01

    The prognosis in virtually all solid tumors depends on the presence or absence of lymph node metastases.1-3 Surgical treatment most often combines radical excision of the tumor with a full lymphadenectomy in the drainage area of the tumor. However, removal of lymph nodes is associated with increased morbidity due to infection, wound breakdown and lymphedema.4,5 As an alternative, the sentinel lymph node procedure (SLN) was developed several decades ago to detect the first draining lymph node from the tumor.6 In case of lymphogenic dissemination, the SLN is the first lymph node that is affected (Figure 1). Hence, if the SLN does not contain metastases, downstream lymph nodes will also be free from tumor metastases and need not to be removed. The SLN procedure is part of the treatment for many tumor types, like breast cancer and melanoma, but also for cancer of the vulva and cervix.7 The current standard methodology for SLN-detection is by peritumoral injection of radiocolloid one day prior to surgery, and a colored dye intraoperatively. Disadvantages of the procedure in cervical and vulvar cancer are multiple injections in the genital area, leading to increased psychological distress for the patient, and the use of radioactive colloid. Multispectral fluorescence imaging is an emerging imaging modality that can be applied intraoperatively without the need for injection of radiocolloid. For intraoperative fluorescence imaging, two components are needed: a fluorescent agent and a quantitative optical system for intraoperative imaging. As a fluorophore we have used indocyanine green (ICG). ICG has been used for many decades to assess cardiac function, cerebral perfusion and liver perfusion.8 It is an inert drug with a safe pharmaco-biological profile. When excited at around 750 nm, it emits light in the near-infrared spectrum around 800 nm. A custom-made multispectral fluorescence imaging camera system was used.9. The aim of this video article is to demonstrate the

  12. Real-time measurement of blood pressure with Nexfin in a patient with thalidomide-related phocomelia.

    PubMed

    Earle, Rosie; Vaghadia, Himat; Shanahan, Enda; Tang, Raymond; Sawka, Andrew

    2016-11-01

    We report the novel application of photoplethysmographic technology with the Nexfin HD monitor for real-time measurement of blood pressure (BP) in a patient with tetraamelia. The patient was a 58-year-old man with tetraamelia secondary to thalidomide exposure in utero, who presented for surgical excision of a maxillary schwannoma. Because difficulty of cuff use on rudimentary limbs and failure to gain invasive arterial access due to abnormalities of limb vasculature, this population is known to pose some unique challenges for BP measurement. Nexfin may offer an alternative noninvasive method to detect BP in patients with phocomelia during the perioperative period. PMID:27687383

  13. The Quantitative Measurement Of Temperature Distribution In 3-D Thermal Field With High-Speed Real-Time Holographic Interferometry

    NASA Astrophysics Data System (ADS)

    Ji-zong, Wu; Wei-qiao, Fu; Qin, Wu

    1989-06-01

    The theory of using high-speed real-time holographic interferometry to measure quantitatively 3-D thermal field is discussed in thispaper. An experimental arrangement, and the holographic interference fringes of thermal field formed by the electrAc heating coil wires which were taken by the high-speed camera are given. With CONCEPT 32/2725 computer system and corresponding programms the distribution of 3-D thermal field is calculated and plotted Finally, the problems required to be improved and solved for the method of measuring quantitatively 3-D thermal field are discussed.

  14. Real-time measuring system design and application of thermal expansion displacement during resistance spot welding process

    NASA Astrophysics Data System (ADS)

    Li, YongBing; Xu, Jun; Chen, GuanLong; Lin, ZhongQin

    2005-12-01

    Resistance spot welding (RSW) technology is the most important joining method in auto-body manufacturing. Quality of spot weld not only determines reliability and safety of cars, but also has an important influence on assembly variation of auto-body. Many welding quality parameters, such as welding current, electric resistance, electrode pressure, and thermal expansion displacement, had been proposed to monitoring and controlling spot weld quality, in which thermal expansion displacement was thought as a very promising method. But the measurement of dynamic displacement encounters many difficulties in measuring precision, measuring speed and sensor installation, which limit the usage of this method. This paper introduced a kind of laser displacement sensor made in OMRON to overcome the limitations of displacement measuring precision and measuring speed, and at the same time designed an ingenious fixture to mount the sensor to welding gun. Calibration experiments showed that the fixture reduced vibration introduced by pneumatic welding gun and interference between sensor and welding gun, and have a good linearity with standard clearance gauge. Based on this measuring system, dynamic thermal expansion displacement during RSW process was real-time monitored. Analysis found thermal expansion displacement can be used to real-time distinguish weld quality, such as small nugget, splash.

  15. Implementation of a data processing platform for real-time distance measurement with dual-comb lasers

    NASA Astrophysics Data System (ADS)

    Ni, Kai; Xu, Mingfei; Zhou, Qian; Dong, Hao; Li, Xinghui; Wu, Guanhao

    2015-08-01

    Absolute distance measurement with dual femtosecond comb lasers has advantages of wide-range, high-accuracy and fast speed. It combines time-of-flight and interferometric measurement. The novelty of ranging method leads to new challenges in designing the data acquisition and processing hardware system. Currently there are no available real-time data processing system for dual-comb ranging. This paper introduces our recent progress on designing and implementing such a platform. Our platform mainly contains four different function modules. First, a clock module that accept a 250MHz maximum reference clock input was introduced to generate the sample clock for A/D converter, and the module's output clock can be delayed up to 20ns with a resolution of 714ps. Second, a high-speed data acquisition module with a 14-bit resolution and a 125 MSPS maximum sample rate was designed to convert the analog laser pulse signal to digital signal. Third, we built a real-time data processing module that allows an input of 16-bit data in the FPGA to calculate the distance from the digital signal within 83us. Finally, a data transmission module based on a 128MB DDR SDRAM and USB2.0 was added so that we can easily debug the platform in the PC. The performance of our system is evaluated in real-time. The test bench consists of two femtosecond laser sources, an optical fiber interferometer and our data processing system. The repetition frequencies of the two combs are around 50MHz, with frequency difference of 2.5kHz. The center wavelength of laser pulses is 1560nm. The target distance is from 0m to 3m. The experimental results show that our system can output measurement results at the rate of 2500 pts/s, and the measurement deviation is less than 10um.

  16. Functioning nanomachines seen in real-time in living bacteria using single-molecule and super-resolution fluorescence imaging.

    PubMed

    Chiu, Sheng-Wen; Leake, Mark C

    2011-01-01

    Molecular machines are examples of "pre-established" nanotechnology, driving the basic biochemistry of living cells. They encompass an enormous range of function, including fuel generation for chemical processes, transport of molecular components within the cell, cellular mobility, signal transduction and the replication of the genetic code, amongst many others. Much of our understanding of such nanometer length scale machines has come from in vitro studies performed in isolated, artificial conditions. Researchers are now tackling the challenges of studying nanomachines in their native environments. In this review, we outline recent in vivo investigations on nanomachines in model bacterial systems using state-of-the-art genetics technology combined with cutting-edge single-molecule and super-resolution fluorescence microscopy. We conclude that single-molecule and super-resolution fluorescence imaging provide powerful tools for the biochemical, structural and functional characterization of biological nanomachines. The integrative spatial, temporal, and single-molecule data obtained simultaneously from fluorescence imaging open an avenue for systems-level single-molecule cellular biophysics and in vivo biochemistry.

  17. Real-time cell analysis: sensitivity of different vertebrate cell cultures to copper sulfate measured by xCELLigence(®).

    PubMed

    Rakers, S; Imse, F; Gebert, M

    2014-10-01

    In this study, we report the use of a real-time cell analysis (RTCA) test system, the xCELLigence(®) RTCA, as efficient tool for a fast cytotoxicity analysis and comparison of four different vertebrate cell cultures. This new dynamic real-time monitoring and impedance-based assay allows for a combined measurement of cell adhesion, spreading and proliferation. Cell cultures were obtained from mouse, rat, human and fish, all displaying a fibroblast-like phenotype. The measured impedance values could be correlated to characteristic cell culture behaviours. In parallel, relative cytotoxicity of a commonly used but due to its very good water solubility highly hazardous pesticide, copper sulfate, was evaluated under in vitro conditions through measurements of cell viability by classical end-point based assays MTT and PrestoBlue(®). Cell line responses in terms of viability as measured by these three methods were variable between the fish skin cells and cells from higher vertebrates and also between the three methods. The advantage of impedance-based measurements is mainly based on the continuous monitoring of cell responses for a broad range of different cells, including fish cells. PMID:25001081

  18. Measuring of Gastric Emptying in Egyptian Pediatric Patients with Portal Hypertension by Using Real-time Ultrasound

    PubMed Central

    Fahmy, Mona E.; Osman, Mahmoud A.; Mahmoud, Rehab A.; Mohamed, Lamiaa K.; Seif-elnasr, Khaled I.; Eskander, Ayman E.

    2012-01-01

    Background/Aim: Among the various methods for evaluating gastric emptying, the real-time ultrasound is safe, does not require intubation, or rely on either radiologic or radionuclide technique. The aim of our work was to measure the gastric emptying in pediatric patients with portal hypertension by using the real-time ultrasound. Patients and Methods: Forty patients with portal hypertension with mean age 7 ± 2.8 years and 20 healthy children as a control group underwent gastric emptying study by using real-time ultrasound. The cross-sectional area of the gastric antrum was measured in the fasting state and then each subject was allowed to drink tap water then calculated by using formula area (π longitudinal × anteroposterior diameter/4). The intragastric volume was assumed to be directly proportional to the cross-sectional area of the antrum. Results: The mean gastric emptying half-time volume was significantly delayed in portal hypertension patients (40 ± 6.8 min) compared with the control subjects (27.1 ± 3.6) min (P<0.05). Patients with extrahepatic portal vein obstruction had significant delayed gastric emptying in comparison to patients with portal hypertension due to other etiologies (36.14 ± 4.9 vs 44.41 ± 6.04 min; P<0.01). Conclusion: Ultrasound is a noninvasive and a reliable method for measuring gastric emptying in pediatric patients. Gastric emptying was significantly delayed in patients with portal hypertension. Etiology of portal hypertension may influence gastric emptying time in patients with chronic liver disease. PMID:22249091

  19. Handheld directional reflectometer: an angular imaging device to measure BRDF and HDR in real time

    NASA Astrophysics Data System (ADS)

    Mattison, Phillip R.; Dombrowski, Mark S.; Lorenz, James M.; Davis, Keith J.; Mann, Harley C.; Johnson, Philip; Foos, Bryan

    1998-10-01

    Many applications require quantitative measurements of surface light scattering, including quality control on production lines, inspection of painted surfaces, inspection of field repairs, etc. Instruments for measuring surface scattering typically fall into two main categories, namely bidirectional reflectometers, which measure the angular distribution of scattering, and hemispherical directional reflectometers, which measure the total scattering into the hemisphere above the surface. Measurement of the bi-directional reflectance distribution function (BRDF) gives the greatest insight into how light is scattered from a surface. Measurements of BRDF, however, are typically very lengthy measurements taken by moving a source and detector to map the scattering. Since BRDF has four angular degrees of freedom, such measurements can require hours to days to complete. Instruments for measuring BRDF are also typically laboratory devices, although a field- portable bi-directional reflectometer does exist. Hemispherical directional reflectance (HDR) is a much easier measurement to make, although care must be taken to use the proper methodology when measuring at wavelengths beyond 10 micrometer, since integrating spheres (typically used to make such measurements) are very energy inefficient and lose their integrating properties at very long wavelengths. A few field- portable hemispherical directional reflectometers do exist, but typically measure HDR only at near-normal angles. Boeing Defense and Space Group and Surface Optics Corporation, under a contract from the Air Force Research Laboratory, have developed a new hand-held instrument capable of measuring both BRDF and HDR using a unique, patented angular imaging technique. A combination of an hemi-ellipsoidal mirror and an additional lens translate the angular scatter from a surface into a two-dimensional spatial distribution, which is recorded by an imaging array. This configuration fully maps the scattering from a half

  20. Flow Cytometry for Real-Time Measurement of Guanine Nucleotide Binding and Exchange by Ras-like GTPases

    PubMed Central

    Schwartz, Samantha L.; Tessema, Mathewos; Buranda, Tione; Phlypenko, Olena; Rak, Alexey; Simons, Peter C.; Surviladze, Zurab; Sklar, Larry A.; Wandinger-Ness, Angela

    2008-01-01

    Ras-like small GTPases cycle between GTP-bound active and GDP-bound inactive conformational states to regulate diverse cellular processes. Despite their importance, detailed kinetic or comparative studies of family members are rarely undertaken due to the lack of real-time assays measuring nucleotide binding or exchange. Here, we report a bead-based, flow cytometric assay that quantitatively measures the nucleotide binding properties of GST-chimeras for prototypical Ras-family members Rab7 and Rho. Measurements are possible in the presence or absence of Mg2+, with magnesium cations principally increasing affinity and slowing nucleotide dissociation rate 8- to 10-fold. GST-Rab7 exhibited a 3-fold higher affinity for GDP relative to GTP that is consistent with a 3-fold slower dissociation rate of GDP. Strikingly, GST-Rab7 had a marked preference for GTP with ribose ring-conjugated BODIPY FL. The more commonly used γ-NH-conjugated BODIPY FL GTP analogue failed to bind to GST-Rab7. In contrast, both BODIPY analogues bound equally well to GST-RhoA and GST-RhoC. Comparisons of the GST-Rab7 and GST-RhoA GTP-binding pockets provide a structural basis for the observed binding differences. In sum, the flow cytometric assay can be used to measure nucleotide binding properties of GTPases in real-time and quantitatively assess differences between GTPases. PMID:18638444

  1. Real Time Measurement of the Size Distribution of Particulate Matter by a Light Scattering Method

    ERIC Educational Resources Information Center

    Gravatt, C. C., Jr.

    1973-01-01

    Discusses a light scattering instrument designed to measure the size of particles in an air flow in approximately 25 microseconds and at a concentration as high as 10,000 particles/cc. Indicates that the measurement can be made for all particles, independent of their index of refraction. (CC)

  2. A real-time measurement system for parameters of live biology metabolism process with fiber optics

    NASA Astrophysics Data System (ADS)

    Tao, Wei; Zhao, Hui; Liu, Zemin; Cheng, Jinke; Cai, Rong

    2010-08-01

    Energy metabolism is one of the basic life activities of cellular in which lactate, O2 and CO2 will be released into the extracellular environment. By monitoring the quantity of these parameters, the mitochondrial performance will be got. A continuous measurement system for the concentration of O2, CO2 and PH value is introduced in this paper. The system is made up of several small-sized fiber optics biosensors corresponding to the container. The setup of the system and the principle of measurement of several parameters are explained. The setup of the fiber PH sensor based on principle of light absorption is also introduced in detail and some experimental results are given. From the results we can see that the system can measure the PH value precisely suitable for cell cultivation. The linear and repeatable accuracies are 3.6% and 6.7% respectively, which can fulfill the measurement task.

  3. Uncertainty modelling of real-time observation of a moving object: photogrammetric measurements

    NASA Astrophysics Data System (ADS)

    Ulrich, Thomas

    2015-04-01

    Photogrametric systems are widely used in the field of industrial metrology to measure kinematic tasks such as tracking robot movements. In order to assess spatiotemporal deviations of a kinematic movement, it is crucial to have a reliable uncertainty of the kinematic measurements. Common methods to evaluate the uncertainty in kinematic measurements include approximations specified by the manufactures, various analytical adjustment methods and Kalman filters. Here a hybrid system estimator in conjunction with a kinematic measurement model is applied. This method can be applied to processes which include various types of kinematic behaviour, constant velocity, variable acceleration or variable turn rates. Additionally, it has been shown that the approach is in accordance with GUM (Guide to the Expression of Uncertainty in Measurement). The approach is compared to the Kalman filter using simulated data to achieve an overall error calculation. Furthermore, the new approach is used for the analysis of a rotating system as this system has both a constant and a variable turn rate. As the new approach reduces overshoots it is more appropriate for analysing kinematic processes than the Kalman filter. In comparison with the manufacturer’s approximations, the new approach takes account of kinematic behaviour, with an improved description of the real measurement process. Therefore, this approach is well-suited to the analysis of kinematic processes with unknown changes in kinematic behaviour.

  4. Linking Near Real-Time Water Quality Measurements to Fecal Coliforms and Trace Organic Pollutants in Urban Streams

    NASA Astrophysics Data System (ADS)

    Henjum, M.; Wennen, C.; Hondzo, M.; Hozalski, R. M.; Novak, P. J.; Arnold, W. A.

    2009-05-01

    Anthropogenic pollutants, including pesticides, herbicides, pharmaceuticals, and estrogens are detected in urban water bodies. Effective examination of dilute organic and microbial pollutant loading rates within surface waters is currently prohibitively expensive and labor intensive. Effort is being placed on the development of improved monitoring methodologies to more accurately assess surface water quality and evaluate the effectiveness of water quality management practices. Throughout the summer and fall of 2008 a "real-time" wireless network equipped with high frequency fundamental water quality parameter sensors measured turbidity, conductivity, pH, depth, temperature, dissolved oxygen and nitrate above and below stormwater inputs at two urban stream locations. At each location one liter grab samples were concurrently collected by ISCO automatic samplers at two hour intervals for 24 hour durations during three dry periods and five rain events. Grab samples were analyzed for fecal coliforms, atrazine (agricultural herbicide), prometon (residential herbicide) and caffeine (wastewater indicator). Surrogate relationships between easy-to-measure water quality parameters and difficult-to-measure pollutants were developed, subsequently facilitating monitoring of these pollutants without the development of new, and likely costly, technologies. Additionally, comparisons were made between traditional grab sampling techniques and the "real-time" monitoring to assess the accuracy of Total Maximum Daily Load (TMDL) calculations.

  5. Single-nanoparticle near-infrared surface plasmon resonance microscopy for real-time measurements of DNA hybridization adsorption.

    PubMed

    Halpern, Aaron R; Wood, Jennifer B; Wang, Yong; Corn, Robert M

    2014-01-28

    A novel 814 nm near-infrared surface plasmon resonance (SPR) microscope is used for the real-time detection of the sequence-selective hybridization adsorption of single DNA-functionalized gold nanoparticles. The objective-coupled, high numerical aperture SPR microscope is capable of imaging in situ the adsorption of single polystyrene and gold particles with diameters ranging from 450 to 20 nm onto a 90 μm × 70 μm area of a gold thin film with a time resolution of approximately 1-3 s. Initial real-time SPR imaging (SPRI) measurements were performed to detect the accumulation of 40 nm gold nanoparticles for 10 min onto a gold thin film functionalized with a 100% complementary DNA surface at concentrations from 5 pM to 100 fM by counting individual particle binding events. A 100% noncomplementary DNA surface exhibited virtually no nanoparticle adsorption. In contrast, in a second set of SPRI measurements, two component complementary/noncomplementary mixed DNA monolayers that contained a very small percentage of complementary sequences ranging from 0.1 to 0.001%, showed both permanent and transient hybridization adsorption of the gold nanoparticles that could be tracked both temporally and spatially with the SPR microscope. These experiments demonstrate that SPR imaging measurements of single biofunctionalized nanoparticles can be incorporated into bioaffinity biosensing methods at subpicomolar concentrations.

  6. A Label-Free, Sensitive, Real-Time, Semiquantitative Electrochemical Measurement Method for DNA Polymerase Amplification (ePCR).

    PubMed

    Aydemir, Nihan; McArdle, Hazel; Patel, Selina; Whitford, Whitney; Evans, Clive W; Travas-Sejdic, Jadranka; Williams, David E

    2015-01-01

    Oligonucleotide hybridization to a complementary sequence that is covalently attached to an electrochemically active conducting polymer (ECP) coating the working electrode of an electrochemical cell causes an increase in reaction impedance for the ferro-ferricyanide redox couple. We demonstrate the use of this effect to measure, in real time, the progress of DNA polymerase chain reaction (PCR) amplification of a minor component of a DNA extract. The forward primer is attached to the ECP. The solution contains other PCR components and the redox couple. Each cycle of amplification gives an easily measurable impedance increase. Target concentration can be estimated by cycle count to reach a threshold impedance. As proof of principle, we demonstrate an electrochemical real-time quantitative PCR (e-PCR) measurement in the total DNA extracted from chicken blood of an 844 base pair region of the mitochondrial Cytochrome c oxidase gene, present at ∼1 ppm of total DNA. We show that the detection and semiquantitation of as few as 2 copies/μL of target can be achieved within less than 10 PCR cycles.

  7. Real-time measurement of alveolar size and population using phase contrast x-ray imaging

    PubMed Central

    Leong, Andrew F.T.; Buckley, Genevieve A.; Paganin, David M.; Hooper, Stuart B.; Wallace, Megan J.; Kitchen, Marcus J.

    2014-01-01

    Herein a propagation-based phase contrast x-ray imaging technique for measuring particle size and number is presented. This is achieved with an algorithm that utilizes the Fourier space signature of the speckle pattern associated with the images of particles. We validate this algorithm using soda-lime glass particles, demonstrating its effectiveness on random and non-randomly packed particles. This technique is then applied to characterise lung alveoli, which are difficult to measure dynamically in vivo with current imaging modalities due to inadequate temporal resolution and/or depth of penetration and field-of-view. We obtain an important result in that our algorithm is able to measure changes in alveolar size on the micron scale during ventilation and shows the presence of alveolar recruitment/de-recruitment in newborn rabbit kittens. This technique will be useful for ventilation management and lung diagnostic procedures. PMID:25426328

  8. Digital ruler: real-time object tracking and dimension measurement using stereo cameras

    NASA Astrophysics Data System (ADS)

    Nash, James; Atanassov, Kalin; Goma, Sergio; Ramachandra, Vikas; Siddiqui, Hasib

    2013-02-01

    Stereo metrology involves obtaining spatial estimates of an object's length or perimeter using the disparity between boundary points. True 3D scene information is required to extract length measurements of an object's projection onto the 2D image plane. In stereo vision the disparity measurement is highly sensitive to object distance, baseline distance, calibration errors, and relative movement of the left and right demarcation points between successive frames. Therefore a tracking filter is necessary to reduce position error and improve the accuracy of the length measurement to a useful level. A Cartesian coordinate extended Kalman (EKF) filter is designed based on the canonical equations of stereo vision. This filter represents a simple reference design that has not seen much exposure in the literature. A second filter formulated in a modified sensor-disparity (DS) coordinate system is also presented and shown to exhibit lower errors during a simulated experiment.

  9. In vivo absorbed dose measurements in mammography using a new real-time luminescence technique.

    PubMed

    Aznar, M C; Hemdal, B; Medin, J; Marckmann, C J; Andersen, C E; Bøtter-Jensen, L; Andersson, I; Mattsson, S

    2005-04-01

    A dosimetry system based on radioluminescence (RL) and optically stimulated luminescence (OSL) from carbon doped aluminium oxide (Al2O3:C) crystals was developed for in vivo absorbed dose measurements in mammography. A small cylindrical crystal of Al2O3:C (diameter 0.48 mm and length 2 mm) was coupled to the end of a 1 mm diameter optical fibre cable. Owing to their small size and characteristic shape, these probes can be placed on the body surface in the field of view during the examination, without compromising the reading of the mammogram. Our new technique was tested with a mammography unit (Siemens Mammomat 3000) and screen-film technique over a range of clinically relevant X-ray energies. The results were compared with those obtained from an ionization chamber usually used for the determination of absorbed dose in mammography. The reproducibility of measurements was around 3% (1 standard deviation) at 4.5 mGy for both RL and OSL data. The dose response was found to be linear between 4.5 mGy and 30 mGy. The energy dependence of the system is around 18% between 23 kV and 35 kV. In vivo measurements were performed during three patient examinations. It was shown that entrance and exit doses could be measured. The presence of the small probes did not significantly interfere with the diagnostic quality of the images. Entrance doses estimated by RL/OSL results agreed within 3% with entrance surface dose values calculated from the ionization chamber measurements. These results indicate a considerable potential for use in routine control and in vivo dose measurements in mammography.

  10. High-precision broadband measurement of refractive index by picosecond real-time interferometry.

    PubMed

    Tan, Zheng Jie; Jin, Dafei; Fang, Nicholas X

    2016-08-20

    The refractive index is one of the most important quantities that characterize a material's optical properties. However, it is hard to measure this value over a wide range of wavelengths. Here, we demonstrate a new technique to achieve a spectrally broad refractive index measurement. When a broadband pulse passes through a sample, different wavelengths experience different delays. By comparing the delayed pulse to a reference pulse, the zero path difference position for each wavelength can be obtained and the material's dispersion can be retrieved. Our technique is highly robust and accurate, and can be miniaturized in a straightforward manner. PMID:27556980

  11. Ultrasonic device for real-time sewage velocity and suspended particles concentration measurements.

    PubMed

    Abda, F; Azbaid, A; Ensminger, D; Fischer, S; François, P; Schmitt, P; Pallarès, A

    2009-01-01

    In the frame of a technological research and innovation network in water and environment technologies (RITEAU, Réseau de Recherche et d'Innovation Technologique Eau et Environnement), our research group, in collaboration with industrial partners and other research institutions, has been in charge of the development of a suitable flowmeter: an ultrasonic device measuring simultaneously the water flow and the concentration of size classes of suspended particles. Working on the pulsed ultrasound principle, our multi-frequency device (1 to 14 MHz) allows flow velocity and water height measurement and estimation of suspended solids concentration. Velocity measurements rely on the coherent Doppler principle. A self developed frequency estimator, so called Spectral Identification method, was used and compared to the classical Pulse-Pair method. Several measurements campaigns on one wastewater collector of the French city of Strasbourg gave very satisfactory results and showed smaller standard deviation values for the Doppler frequency extracted by the Spectral Identification method. A specific algorithm was also developed for the water height measurements. It relies on the water surface acoustic impedance rupture and its peak localisation and behaviour in the collected backscattering data. This algorithm was positively tested on long time measurements on the same wastewater collector. A large part of the article is devoted to the measurements of the suspended solids concentrations. Our data analysis consists in the adaptation of the well described acoustic behaviour of sand to the behaviour of wastewater particles. Both acoustic attenuation and acoustic backscattering data over multiple frequencies are analyzed for the extrapolation of size classes and respective concentrations. Under dry weather conditions, the massic backscattering coefficient and the overall size distribution showed similar evolution whatever the measurement site was and were suggesting a global

  12. A system for the real time, direct measurement of natural gas flow

    SciTech Connect

    Sowell, T.

    1995-12-31

    PMI/Badger Meter, Inc. with partial sponsorship from the Gas Research Institute, has designed and developed direct measurement total energy flow metering instrumentation. As industry demands for improved accuracy and speed of measurement have increased so has the complexity of the overall hardware and software systems. Considering traditional system approaches, few companies have the in house capability of maintaining a complete system. This paper addresses efforts to implement a direct, total gas energy flow metering system which is simple to use and cost effective.

  13. Design and Development of a Real-Time Model Attitude Measurement System for Hypersonic Facilities

    NASA Technical Reports Server (NTRS)

    Jones, Thomas W.; Lunsford, Charles B.

    2005-01-01

    A series of wind tunnel tests have been conducted to evaluate a multi-camera videogrammetric system designed to measure model attitude in hypersonic facilities. The technique utilizes processed video data and applies photogrammetric principles for point tracking to compute model position including pitch, roll and yaw variables. A discussion of the constraints encountered during the design, development, and testing process, including lighting, vibration, operational range and optical access is included. Initial measurement results from the NASA Langley Research Center (LaRC) 31-Inch Mach 10 tunnel are presented.

  14. Design and Development of a Real-Time Model Attitude Measurement System for Hypersonic Facilities

    NASA Technical Reports Server (NTRS)

    Jones, Thomas W.; Lunsford, Charles B.

    2004-01-01

    A series of wind tunnel tests have been conducted to evaluate a multi-camera videogrammetric system designed to measure model attitude in hypersonic facilities. The technique utilizes processed video data and applies photogrammetric principles for point tracking to compute model position including pitch, roll and yaw variables. A discussion of the constraints encountered during the design, development, and testing process, including lighting, vibration, operational range and optical access is included. Initial measurement results from the NASA Langley Research Center (LaRC) 31-Inch Mach 10 tunnel are presented.

  15. Real-Time Temperature Measurement in a Vacuum Degasser Using Optical Pyrometry

    SciTech Connect

    Michel Bonin - Process Metrix; Peter Hues - Process Metrix; William Federoff - US Steel Nichloas Rymarchyk - Berry Metals; Todd Smith - Berry Metals

    2007-02-14

    The objective of the research was the development of a fiber-coupled, optical pyrometer for continuous temperature measurement in a vacuum degasser that reduces process time, enhances process control, and eliminates manual or robot-operated thermocouples. Through the live testing performed at US Steel's Edgar Thompson Works, the challenges associated with making optical temperature measurements in a vacuum chamber were identified. As a result of these challenges it was determined that continuous temperature monitoring in RH-type degassers was not a viable alternative to standard immersion thermocouples. The project was not successful.

  16. High-precision broadband measurement of refractive index by picosecond real-time interferometry.

    PubMed

    Tan, Zheng Jie; Jin, Dafei; Fang, Nicholas X

    2016-08-20

    The refractive index is one of the most important quantities that characterize a material's optical properties. However, it is hard to measure this value over a wide range of wavelengths. Here, we demonstrate a new technique to achieve a spectrally broad refractive index measurement. When a broadband pulse passes through a sample, different wavelengths experience different delays. By comparing the delayed pulse to a reference pulse, the zero path difference position for each wavelength can be obtained and the material's dispersion can be retrieved. Our technique is highly robust and accurate, and can be miniaturized in a straightforward manner.

  17. Ultrasonic device for real-time sewage velocity and suspended particles concentration measurements.

    PubMed

    Abda, F; Azbaid, A; Ensminger, D; Fischer, S; François, P; Schmitt, P; Pallarès, A

    2009-01-01

    In the frame of a technological research and innovation network in water and environment technologies (RITEAU, Réseau de Recherche et d'Innovation Technologique Eau et Environnement), our research group, in collaboration with industrial partners and other research institutions, has been in charge of the development of a suitable flowmeter: an ultrasonic device measuring simultaneously the water flow and the concentration of size classes of suspended particles. Working on the pulsed ultrasound principle, our multi-frequency device (1 to 14 MHz) allows flow velocity and water height measurement and estimation of suspended solids concentration. Velocity measurements rely on the coherent Doppler principle. A self developed frequency estimator, so called Spectral Identification method, was used and compared to the classical Pulse-Pair method. Several measurements campaigns on one wastewater collector of the French city of Strasbourg gave very satisfactory results and showed smaller standard deviation values for the Doppler frequency extracted by the Spectral Identification method. A specific algorithm was also developed for the water height measurements. It relies on the water surface acoustic impedance rupture and its peak localisation and behaviour in the collected backscattering data. This algorithm was positively tested on long time measurements on the same wastewater collector. A large part of the article is devoted to the measurements of the suspended solids concentrations. Our data analysis consists in the adaptation of the well described acoustic behaviour of sand to the behaviour of wastewater particles. Both acoustic attenuation and acoustic backscattering data over multiple frequencies are analyzed for the extrapolation of size classes and respective concentrations. Under dry weather conditions, the massic backscattering coefficient and the overall size distribution showed similar evolution whatever the measurement site was and were suggesting a global

  18. MATtrack: A MATLAB-Based Quantitative Image Analysis Platform for Investigating Real-Time Photo-Converted Fluorescent Signals in Live Cells.

    PubMed

    Courtney, Jane; Woods, Elena; Scholz, Dimitri; Hall, William W; Gautier, Virginie W

    2015-01-01

    We introduce here MATtrack, an open source MATLAB-based computational platform developed to process multi-Tiff files produced by a photo-conversion time lapse protocol for live cell fluorescent microscopy. MATtrack automatically performs a series of steps required for image processing, including extraction and import of numerical values from Multi-Tiff files, red/green image classification using gating parameters, noise filtering, background extraction, contrast stretching and temporal smoothing. MATtrack also integrates a series of algorithms for quantitative image analysis enabling the construction of mean and standard deviation images, clustering and classification of subcellular regions and injection point approximation. In addition, MATtrack features a simple user interface, which enables monitoring of Fluorescent Signal Intensity in multiple Regions of Interest, over time. The latter encapsulates a region growing method to automatically delineate the contours of Regions of Interest selected by the user, and performs background and regional Average Fluorescence Tracking, and automatic plotting. Finally, MATtrack computes convenient visualization and exploration tools including a migration map, which provides an overview of the protein intracellular trajectories and accumulation areas. In conclusion, MATtrack is an open source MATLAB-based software package tailored to facilitate the analysis and visualization of large data files derived from real-time live cell fluorescent microscopy using photoconvertible proteins. It is flexible, user friendly, compatible with Windows, Mac, and Linux, and a wide range of data acquisition software. MATtrack is freely available for download at eleceng.dit.ie/courtney/MATtrack.zip.

  19. MATtrack: A MATLAB-Based Quantitative Image Analysis Platform for Investigating Real-Time Photo-Converted Fluorescent Signals in Live Cells

    PubMed Central

    Courtney, Jane; Woods, Elena; Scholz, Dimitri; Hall, William W.; Gautier, Virginie W.

    2015-01-01

    We introduce here MATtrack, an open source MATLAB-based computational platform developed to process multi-Tiff files produced by a photo-conversion time lapse protocol for live cell fluorescent microscopy. MATtrack automatically performs a series of steps required for image processing, including extraction and import of numerical values from Multi-Tiff files, red/green image classification using gating parameters, noise filtering, background extraction, contrast stretching and temporal smoothing. MATtrack also integrates a series of algorithms for quantitative image analysis enabling the construction of mean and standard deviation images, clustering and classification of subcellular regions and injection point approximation. In addition, MATtrack features a simple user interface, which enables monitoring of Fluorescent Signal Intensity in multiple Regions of Interest, over time. The latter encapsulates a region growing method to automatically delineate the contours of Regions of Interest selected by the user, and performs background and regional Average Fluorescence Tracking, and automatic plotting. Finally, MATtrack computes convenient visualization and exploration tools including a migration map, which provides an overview of the protein intracellular trajectories and accumulation areas. In conclusion, MATtrack is an open source MATLAB-based software package tailored to facilitate the analysis and visualization of large data files derived from real-time live cell fluorescent microscopy using photoconvertible proteins. It is flexible, user friendly, compatible with Windows, Mac, and Linux, and a wide range of data acquisition software. MATtrack is freely available for download at eleceng.dit.ie/courtney/MATtrack.zip. PMID:26485569

  20. The Elastic Body Model: A Pedagogical Approach Integrating Real Time Measurements and Modelling Activities

    ERIC Educational Resources Information Center

    Fazio, C.; Guastella, I.; Tarantino, G.

    2007-01-01

    In this paper, we describe a pedagogical approach to elastic body movement based on measurements of the contact times between a metallic rod and small bodies colliding with it and on modelling of the experimental results by using a microcomputer-based laboratory and simulation tools. The experiments and modelling activities have been built in the…

  1. Innovative real-time and non-destructive method of beam profile measurement under large beam current irradiation for BNCT

    NASA Astrophysics Data System (ADS)

    Takada, M.; Kamada, S.; Suda, M.; Fujii, R.; Nakamura, M.; Hoshi, M.; Sato, H.; Endo, S.; Hamano, T.; Arai, S.; Higashimata, A.

    2012-10-01

    We developed a real-time and non-destructive method of beam profile measurement on a target under large beam current irradiation, and without any complex radiation detectors or electrical circuits. We measured the beam profiles on a target by observing the target temperature using an infrared-radiation thermometer camera. The target temperatures were increased and decreased quickly by starting and stopping the beam irradiation within 1 s in response speed. Our method could trace beam movements rapidly. The beam size and position were calibrated by measuring O-ring heat on the target. Our method has the potential to measure beam profiles at beam current over 1 mA for proton and deuteron with the energy around 3 MeV and allows accelerator operators to adjust the beam location during beam irradiation experiments without decreasing the beam current.

  2. A simple optical system for real-time size measurements of TRISO fuel pellets

    SciTech Connect

    Karnowski, Thomas Paul; Kercher, Andrew K; Hunn, John D; Maxey, L Curt

    2006-01-01

    Oak Ridge National Laboratory (ORNL) has begun the development of a program for the manufacturing and characterizing fuel pellets for use in advanced nuclear reactors. To achieve high reliability it is necessary to characterize the pellets during production runs. In this paper we present a simple TRISO Particle Counting And Sizing Tool (TP-CAST) that performs dual measurements of counting and size estimation for particles at rates up to 200 per second. The TP-CAST is based on a laser with line-generation optics and a PC-based data acquisition and analysis system. The instrument can measure 1000 micron pellets with a standard deviation of approximately 11 microns and with counting errors less than 0.075%. Our paper discusses the signal modeling, algorithms for size estimation, system design, and experimental results of the prototype TP-CAST system assembled at ORNL.

  3. Obtaining Reliable Predictions of Terrestrial Energy Coupling From Real-Time Solar Wind Measurement

    NASA Technical Reports Server (NTRS)

    Weimer, Daniel R.

    2001-01-01

    The first draft of a manuscript titled "Variable time delays in the propagation of the interplanetary magnetic field" has been completed, for submission to the Journal of Geophysical Research. In the preparation of this manuscript all data and analysis programs had been updated to the highest temporal resolution possible, at 16 seconds or better. The program which computes the "measured" IMF propagation time delays from these data has also undergone another improvement. In another significant development, a technique has been developed in order to predict IMF phase plane orientations, and the resulting time delays, using only measurements from a single satellite at L1. The "minimum variance" method is used for this computation. Further work will be done on optimizing the choice of several parameters for the minimum variance calculation.

  4. Quasi-real-time photon pulse duration measurement by analysis of FEL radiation spectra.

    PubMed

    Engel, Robin; Düsterer, Stefan; Brenner, Günter; Teubner, Ulrich

    2016-01-01

    For photon diagnostics at free-electron lasers (FELs), the determination of the photon pulse duration is an important challenge and a complex task. This is especially true for SASE FELs with strongly fluctuating pulse parameters. However, most techniques require an extensive experimental setup, data acquisition and evaluation time, limiting the usability in all-day operation. In contrast, the presented work uses an existing approach based on the analysis of statistical properties of measured SASE FEL spectra and implements it as a software tool, integrated in FLASH's data acquisition system. This allows the calculation of the average pulse durations from a set of measured spectral distributions with only seconds of delay, whenever high-resolution spectra are recorded. PMID:26698053

  5. Noninvasive, real-time measurements of plasma parameters via optical emission spectroscopy

    SciTech Connect

    Wang Shicong; Wendt, Amy E.; Boffard, John B.; Lin, Chun C.; Radovanov, Svetlana; Persing, Harold

    2013-03-15

    Plasma process control applications require acquisition of diagnostic data at a rate faster than the characteristic timescale of perturbations to the plasma. Diagnostics based on optical emission spectroscopy of intense emission lines permit rapid noninvasive measurements with low-resolution ({approx}1 nm), fiber-coupled spectrographs, which are included on many plasma process tools for semiconductor processing. Here the authors report on rapid analysis of Ar emissions with such a system to obtain electron temperatures, electron densities, and metastable densities in argon and argon/mixed-gas (Ar/N{sub 2}, Ar/O{sub 2}, Ar/H{sub 2}) inductively coupled plasmas. Accuracy of the results (compared to measurements made by Langmuir probe and white-light absorption spectroscopy) are typically better than {+-}15% with a time resolution of 0.1 s, which is more than sufficient to capture the transient behavior of many processes, limited only by the time response of the spectrograph used.

  6. Real-time estimate of body kinematics during a planar squat task using a single inertial measurement unit.

    PubMed

    Bonnet, Vincent; Mazzà, Claudia; Fraisse, Philippe; Cappozzo, Aurelio

    2013-07-01

    This study aimed at the real-time estimation of the lower-limb joint and torso kinematics during a squat exercise, performed in the sagittal plane, using a single inertial measurement unit placed on the lower back. The human body was modeled with a 3-DOF planar chain. The planar IMU orientation and vertical displacement were estimated using one angular velocity and two acceleration components and a weighted Fourier linear combiner. The ankle, knee, and hip joint angles were thereafter obtained through a novel inverse kinematic module based on the use of a Jacobian pseudoinverse matrix and null-space decoupling. The aforementioned algorithms were validated on a humanoid robot for which the mechanical model used and the measured joint angles virtually exhibited no inaccuracies. Joint angles were estimated with a maximal error of 1.5°. The performance of the proposed analytical and experimental methodology was also assessed by conducting an experiment on human volunteers and by comparing the relevant results with those obtained through the more conventional photogrammetric approach. The joint angles provided by the two methods displayed differences equal to 3±1°. These results, associated with the real-time capability of the method, open the door to future field applications in both rehabilitation and sport. PMID:23392337

  7. Field Installation and Real-Time Data Processing of the New Integrated SeismoGeodetic System with Real-Time Acceleration and Displacement Measurements for Earthquake Characterization Based on High-Rate Seismic and GPS Data

    NASA Astrophysics Data System (ADS)

    Zimakov, Leonid; Jackson, Michael; Passmore, Paul; Raczka, Jared; Alvarez, Marcos; Barrientos, Sergio

    2015-04-01

    We will discuss and show the results obtained from an integrated SeismoGeodetic System, model SG160-09, installed in the Chilean National Network. The SG160-09 provides the user high rate GNSS and accelerometer data, full epoch-by-epoch measurement integrity and, using the Trimble Pivot™ SeismoGeodetic App, the ability to create combined GNSS and accelerometer high-rate (200Hz) displacement time series in real-time. The SG160-09 combines seismic recording with GNSS geodetic measurement in a single compact, ruggedized package. The system includes a low-power, 220-channel GNSS receiver powered by the latest Trimble-precise Maxwell™6 technology and supports tracking GPS, GLONASS and Galileo signals. The receiver incorporates on-board GNSS point positioning using Real-Time Precise Point Positioning (PPP) technology with satellite clock and orbit corrections delivered over IP networks. The seismic recording element includes an ANSS Class A, force balance triaxial accelerometer with the latest, low power, 24-bit A/D converter, which produces high-resolution seismic data. The SG160-09 processor acquires and packetizes both seismic and geodetic data and transmits it to the central station using an advanced, error-correction protocol with back fill capability providing data integrity between the field and the processing center. The SG160-09 has been installed in the seismic station close to the area of the Iquique earthquake of April 1, 2014, in northern Chile, a seismically prone area at the current time. The hardware includes the SG160-09 system, external Zephyr Geodetic-2 GNSS antenna, and high-speed Internet communication media. Both acceleration and displacement data was transmitted in real-time to the National Seismological Center in Santiago for real-time data processing using Earthworm / Early Bird software. Command/Control of the field station and real-time GNSS position correction are provided via the Pivot software suite. Data from the SG160-09 system was

  8. Real-time weigh-in-motion measurement using fiber Bragg grating sensors

    NASA Astrophysics Data System (ADS)

    Huang, Ying; Palek, Leonard; Strommen, Robert; Worel, Ben; Chen, Genda

    2014-03-01

    Overloading truck loads have long been one of the key reasons for accelerating road damage, especially in rural regions where the design loads are expected to be small and in the cold regions where the wet-and-dry cycle places a significant role. To control the designed traffic loads and further guide the road design in future, periodical weight stations have been implemented for double check of the truck loads. The weight stations give chances for missing measurement of overloaded vehicles, slow down the traffic, and require additional labors. Infrastructure weight-in-motion sensors, on the other hand, keep consistent traffic flow and monitor all types of vehicles on roads. However, traditional electrical weight-in-motion sensors showed high electromagnetic interference (EMI), high dependence on environmental conditions such as moisture, and relatively short life cycle, which are unreliable for long-term weigh-inmotion measurements. Fiber Bragg grating (FBG) sensors, with unique advantages of compactness, immune to EMI and moisture, capability of quasi-distributed sensing, and long life cycle, will be a perfect candidate for long-term weigh-in-motion measurements. However, the FBG sensors also surfer from their frangible nature of glass materials for a good survive rate during sensor installation. In this study, the FBG based weight-in-motion sensors were packaged by fiber reinforced polymer (FRP) materials and further validated at MnROAD facility, Minnesota DOT (MnDOT). The design and layout of the FRP-FBG weight-in-motion sensors, their field test setup, data acquisition, and data analysis will be presented. Upon validation, the FRP-FBG sensors can be applied weigh-in-motion measurement to assistant road managements.

  9. Real-time gastric motility monitoring using transcutaneous intraluminal impedance measurements (TIIM).

    PubMed

    Poscente, M D; Wang, G; Filip, D; Ninova, P; Yadid-Pecht, O; Andrews, C N; Mintchev, M P

    2014-02-01

    The stomach plays a critical role in digestion, processing ingested food mechanically and breaking it up into particles, which can be effectively and efficiently processed by the intestines. When the motility of the stomach is compromised, digestion is adversely affected. This can lead to a variety of disorders. Current diagnostic techniques for gastric motility disorders are seriously lacking, and are based more on eliminating other possibilities rather than on specific tests. Presently, gastric motility can be assessed by monitoring gastric emptying, food transit, intragastric pressures, etc. The associated tests are usually stationary and of relatively short duration. The present study proposes a new method of measuring gastric motility, utilizing the attenuation of an oscillator-induced electrical signal across the gastric tissue, which is modulated by gastric contractions. The induced high-frequency oscillator signal is generated within the stomach, and is picked up transluminally by cutaneous electrodes positioned on the abdominal area connected to a custom-designed data acquisition instrument. The proposed method was implemented in two different designs: first a transoral catheter was modified to emit the signal inside the stomach; and second, a gastric retentive pill was designed to emit the signal. Both implementations were applied in vivo on two mongrel dogs (25.50 kg and 25.75 kg). Gastric contractions were registered and quantitatively compared to recordings from force transducers sutured onto the serosa of the stomach. Gastric motility indices were calculated for each minute, with transluminal impedance measurements and the measurements from the force transducers showing statistically significant (p < 0.05) Pearson correlation coefficients (0.65 ± 0.08 for the catheter-based design and 0.77 ± 0.03 for the gastric retentive pill design). These results show that transcutaneous intraluminal impedance measurement has the potential with further research

  10. Laser spectroscopic real time measurements of methanogenic activity under simulated Martian subsurface analog conditions

    NASA Astrophysics Data System (ADS)

    Schirmack, Janosch; Böhm, Michael; Brauer, Chris; Löhmannsröben, Hans-Gerd; de Vera, Jean-Pierre; Möhlmann, Diedrich; Wagner, Dirk

    2014-08-01

    On Earth, chemolithoautothrophic and anaerobic microorganisms such as methanogenic archaea are regarded as model organisms for possible subsurface life on Mars. For this reason, the methanogenic strain Methanosarcina soligelidi (formerly called Methanosarcina spec. SMA-21), isolated from permafrost-affected soil in northeast Siberia, has been tested under Martian thermo-physical conditions. In previous studies under simulated Martian conditions, high survival rates of these microorganisms were observed. In our study we present a method to measure methane production as a first attempt to study metabolic activity of methanogenic archaea during simulated conditions approaching conditions of Mars-like environments. To determine methanogenic activity, a measurement technique which is capable to measure the produced methane concentration with high precision and with high temporal resolution is needed. Although there are several methods to detect methane, only a few fulfill all the needed requirements to work within simulated extraterrestrial environments. We have chosen laser spectroscopy, which is a non-destructive technique that measures the methane concentration without sample taking and also can be run continuously. In our simulation, we detected methane production at temperatures down to -5 °C, which would be found on Mars either temporarily in the shallow subsurface or continually in the deep subsurface. The pressure of 50 kPa which we used in our experiments, corresponds to the expected pressure in the Martian near subsurface. Our new device proved to be fully functional and the results indicate that the possible existence of methanogenic archaea in Martian subsurface habitats cannot be ruled out.

  11. Local, real-time measurement of drying films of aqueous polymer solutions using active microrheology.

    PubMed

    Komoda, Yoshiyuki; Leal, L Gary; Squires, Todd M

    2014-05-13

    Oscillatory microdisk rheometry was applied to evaluate the evolution of the viscoelastic properties at the surface of a film of an aqueous solution of poly(vinyl alcohol) (PVA) during drying. The drying rate was measured concurrently, based upon measurements of the variation of film thickness. A fully hydrolyzed PVA solution shows a constant drying rate, while a less hydrolyzed PVA solution exhibits a decreased drying rate in the latter part of the drying process, which occurred at the same time as an increase of the elastic modulus. We suggest that this difference in behavior is a consequence of the fact that both the configuration of the PVA molecule and the strength of interaction with water depend on the degree to which the PVA is hydrolyzed. The polymer concentration at the film surface can be estimated from the measured viscosity at the surface for the fully hydrolyzed PVA solution, and this result then can be compared with two theoretical calculations: one in which the polymer concentration is assumed to remain uniform throughout the film, and the other in which the polymer concentration distribution is determined via a one-dimensional diffusion model. This comparison suggests that the polymer is first concentrated locally near the surface but later in the drying process the distribution of polymer becomes increasingly uniform, possibly due to a spontaneously generated convective flow inside the film.

  12. Real-time measurement of RFR energy distribution in the Macaca mulatta head

    SciTech Connect

    Burr, J.G.; Krupp, J.H.

    1980-01-01

    Temperature increases due to absorption of 1.2 GHz, CW, 70 mW/cm2, radio frequency (RF) energy, were measured in 3.3-cm-radius homogeneous muscle-equivalent spheres, M. mulatta cadaver heads (both detached from and attached to the body) and living, anesthetized M. mulatta heads. Temperatures were measured with a Vitek, Model 101 Electrothermia Monitor and temperature distributions were compared to theoretical predictions from a thermal-response model of a simulated cranial structure. The results show that the thermal response model accurately predicts the temperature distribution in muscle-equivalent spheres, the distribution of temperature in detached M. mulatta heads when exposed from the back of the head, and the distribution of temperature in attached M. mulatta cadaver heads for animals oriented with body parallel to the H-field. The temperature distribution in the detached M. mulatta heads varies markedly with exposure orientation, ie, facing forward, backward, or to the side. The orientation of the M. mulatta cadaver body significantly affects the temperature distribution in the head - with H-field orientation showing high, nonuniform values, and E-field orientation showing low, uniform values. In live animals blood flow produces a significant short-term effect on the temperature distribution in the midbrain, but not the cortex. Midbrain temperatures are both significantly higher and lower than the comparable cadaver measurements, depending on location.

  13. A lab in the field: real-time measurements of water quality and stable isotopes

    NASA Astrophysics Data System (ADS)

    Kirchner, J. W.; von Freyberg, J.

    2015-12-01

    Hydrological and bio-geochemical processes in catchments are largely determined by the flow pathways of water through the subsurface. While the properties of the input (precipitation) and the output (streamflow) can be monitored with relatively low expenditure, subsurface flow processes and travel times remain difficult to quantify. A comprehensive understanding of these physical mechanisms is, however, crucial for a sustainable management of water resources. Natural tracers, such as stable isotopes of water (18O and 2H), in combination with other water quality parameters allows for studying various hydrological and associated processes in great detail. To follow the dynamics in rapidly changing hydrologic systems, high temporal resolution measurements of water isotopes and other constituents is required. Here, we present first results from an extensive field experiment in Switzerland where rain- and river water samples are sampled and analyzed directly in the field every 30 minutes. With this, sample degradation during storage and transportation can be minimized. At the same time, errors due to the collection and handling of numerous water samples are avoided. The fully automated monitoring system is comprised of the newly developed Continuous Water Sampler Module (CoWS), which was coupled to a Picarro L2130-i Cavity Ring-Down Spectrometer (Picarro Inc., USA), to continuously measure 18O and 2H. Optical and electrochemical sensors together with a spectrometer probe monitor NO3-, DOC and physico-chemical parameters, such as oxygen content, pH, electrical conductivity (s::can Messtechnik GmbH, Vienna). An ion chromatograph (Metrohm, Switzerland) allows for precise measurements of the major anions and cations. For quality control, additional water samples are taken automatically at the same frequency and analyzed in the laboratory.

  14. REAL-TIME STABILITY AND PROFILE COMPARISON MEASUREMENTS BETWEEN TWO DIFFERENT LTPS.

    SciTech Connect

    QIAN, S.; WANG, D.J.

    2005-07-31

    The Long Trace Profiler (LTP) is a precise angle measurement instrument, with a sensitivity and accuracy that can be in the sub-micron radian range. LTP characteristics depend on the particular LTP system schematic design, and the quality of components and assembly. The conditions of temperature, alignment, and mirror support during the measurement process vary between different laboratories, which influences significantly the test repeatability and accuracy. In this paper we introduce a direct comparison method to test the same object at the same point in the same environment at the same time by using two LTPs, which significantly increases the reliability of the comparison. A compact, portable LTP (PTLTP), which can be carried to different laboratories around the world, is used for comparison testing. Stability Comparison experiments between the LTP II at the National Synchrotron Radiation Research Center (NSRRC), and the PTLTP of Brookhaven National Laboratory (BNL) reveal significant differences in performance between the instruments. The experiment is set up so that each optical head simultaneously records both its own sample probe beam and also the probe beam from the other optical head. The two probe beams are reflected from same point on the mirror. Tests show that the stability of the PTLTP with a monolithic beam splitter is 10 times better than the stability of the LTP II which has a separated beam splitter unit. A scheme for comparing scanning measurements of a mirror is introduced. Experimental results show a significant difference between the two LTPs due mainly to distortions in the optical components inside the optical head. A new scheme is proposed for further mirror comparison scanning tests.

  15. Development of scalable cook-off models using real-time in situ measurements.

    SciTech Connect

    Schmitt, Robert Gerard; Renlund, Anita Mariana; Erikson, William Wilding; Kaneshige, Michael Jiro

    2003-07-01

    Scalable thermal runaway models for cook-off of energetic materials (EMs) require realistic temperature- and pressure-dependent chemical reaction rates. The Sandia Instrumented Thermal Ignition apparatus was developed to provide in situ small-scale test data that address this model requirement. Spatially and temporally resolved internal temperature measurements have provided new insight into the energetic reactions occurring in PBX 9501, LX-10-2, and PBXN-109. The data have shown previously postulated reaction steps to be incorrect and suggest previously unknown reaction steps. Model adjustments based on these data have resulted in better predictions at a range of scales.

  16. Development of Scalable Cook-Off Models Using Real-Time In Situ Measurements

    NASA Astrophysics Data System (ADS)

    Kaneshige, M. J.; Renlund, A. M.; Schmitt, R. G.; Erikson, W. W.

    2004-07-01

    Scalable thermal runaway models for cook-off of energetic materials (EMs) require realistic temperature- and pressure-dependent chemical reaction rates. The Sandia Instrumented Thermal Ignition apparatus was developed to provide in situ small-scale test data that address this model requirement. Spatially and temporally resolved internal temperature measurements have provided new insight into the energetic reactions occurring in PBX 9501, LX-10-2, and PBXN-109. The data have shown previously postulated reaction steps to be incorrect and suggest previously unknown reaction steps. Model adjustments based on these data have resulted in better predictions at a range of scales.

  17. Biomagnetic measurement system for supine subjects with expanded sensor array and real-time noise reduction.

    PubMed

    Adachi, Yoshiaki; Kawabata, Shigenori; Sasano, Tetsuo; Oyama, Yasuhiro Haruta Daisuke; Uehara, Gen; Sekihara, Kensuke

    2015-01-01

    A biomagnetic measurement system was developed, suitable for the detection of magnetospinogram (MSG) and magnetocardiogram (MCG) signals from the dorsal surface of supine subjects. It is effective for noninvasively observing the electric activity of the spinal cord and/or heart. These biomagnetic signals are extremely weak, and magnetic flux sensors based on superconducting quantum interference devices (SQUIDs) are necessary to detect them. However, highly sensitive magnetic field measurement often suffers from ultra low-band circumstance noise mainly caused by transportation in urban areas. We applied reference sensors for monitoring the circumstance noise, and their outputs multiplied by appropriate weight coefficients were directly input to the feedback coil of a SQUID gradiometer. Synthesized in-phase components reduced the ultra low-band noise by approximately 90%. Both the MSG and MCG signals were successfully detected in a moderately magnetically shielded room. Even though the MCG signal band overlapped the ultra low-band noise, the signal-to-noise ratio was improved.

  18. In vivo real-time measurement of superoxide anion radical with a novel electrochemical sensor.

    PubMed

    Fujita, Motoki; Tsuruta, Ryosuke; Kasaoka, Shunji; Fujimoto, Kenji; Tanaka, Ryo; Oda, Yasutaka; Nanba, Masahiro; Igarashi, Masatsugu; Yuasa, Makoto; Yoshikawa, Toshikazu; Maekawa, Tsuyoshi

    2009-10-01

    The dynamics of superoxide anion (O(2)(-)) in vivo remain to be clarified because no appropriate method exists to directly and continuously monitor and evaluate O(2)(-) in vivo. Here, we establish an in vivo method using a novel electrochemical O(2)(-) sensor. O(2)(-) generated is measured as a current and evaluated as a quantified partial value of electricity (Q(part)), which is calculated by integration of the difference between the baseline and the actual reacted current. The accuracy and efficacy of this method were confirmed by dose-dependent O(2)(-) generation in xanthine-xanthine oxidase in vitro in phosphate-buffered saline and human blood. It was then applied to endotoxemic rats in vivo. O(2)(-) current began to increase 1 h after lipopolysaccharide, and Q(part) increased significantly for 6 h in endotoxemic rats, in comparison to sham-treated rats. These values were attenuated by superoxide dismutase. The generation and attenuation of O(2)(-) were indirectly confirmed by plasma lipid peroxidation with malondialdehyde, endothelial injury with soluble intercellular adhesion molecule-1, and microcirculatory dysfunction. This is a novel method for measuring O(2)(-) in vivo and could be used to monitor and treat the pathophysiology caused by excessive O(2)(-) generation in animals and humans.

  19. Physical processes and real-time chemical measurement of the insect olfactory environment.

    PubMed

    Riffell, Jeffrey A; Abrell, Leif; Hildebrand, John G

    2008-07-01

    Odor-mediated insect navigation in airborne chemical plumes is vital to many ecological interactions, including mate finding, flower nectaring, and host locating (where disease transmission or herbivory may begin). After emission, volatile chemicals become rapidly mixed and diluted through physical processes that create a dynamic olfactory environment. This review examines those physical processes and some of the analytical technologies available to characterize those behavior-inducing chemical signals at temporal scales equivalent to the olfactory processing in insects. In particular, we focus on two areas of research that together may further our understanding of olfactory signal dynamics and its processing and perception by insects. First, measurement of physical atmospheric processes in the field can provide insight into the spatiotemporal dynamics of the odor signal available to insects. Field measurements in turn permit aspects of the physical environment to be simulated in the laboratory, thereby allowing careful investigation into the links between odor signal dynamics and insect behavior. Second, emerging analytical technologies with high recording frequencies and field-friendly inlet systems may offer new opportunities to characterize natural odors at spatiotemporal scales relevant to insect perception and behavior. Characterization of the chemical signal environment allows the determination of when and where olfactory-mediated behaviors may control ecological interactions. Finally, we argue that coupling of these two research areas will foster increased understanding of the physicochemical environment and enable researchers to determine how olfactory environments shape insect behaviors and sensory systems.

  20. Physical Processes and Real-Time Chemical Measurement of the Insect Olfactory Environment

    PubMed Central

    Abrell, Leif; Hildebrand, John G.

    2009-01-01

    Odor-mediated insect navigation in airborne chemical plumes is vital to many ecological interactions, including mate finding, flower nectaring, and host locating (where disease transmission or herbivory may begin). After emission, volatile chemicals become rapidly mixed and diluted through physical processes that create a dynamic olfactory environment. This review examines those physical processes and some of the analytical technologies available to characterize those behavior-inducing chemical signals at temporal scales equivalent to the olfactory processing in insects. In particular, we focus on two areas of research that together may further our understanding of olfactory signal dynamics and its processing and perception by insects. First, measurement of physical atmospheric processes in the field can provide insight into the spatiotemporal dynamics of the odor signal available to insects. Field measurements in turn permit aspects of the physical environment to be simulated in the laboratory, thereby allowing careful investigation into the links between odor signal dynamics and insect behavior. Second, emerging analytical technologies with high recording frequencies and field-friendly inlet systems may offer new opportunities to characterize natural odors at spatiotemporal scales relevant to insect perception and behavior. Characterization of the chemical signal environment allows the determination of when and where olfactory-mediated behaviors may control ecological interactions. Finally, we argue that coupling of these two research areas will foster increased understanding of the physicochemical environment and enable researchers to determine how olfactory environments shape insect behaviors and sensory systems. PMID:18548311

  1. An electrochemical-sensor system for real-time flow measurements in porous materials.

    PubMed

    Bathany, Cédric; Han, Ja-Ryoung; Abi-Samra, Kameel; Takayama, Shuichi; Cho, Yoon-Kyoung

    2015-08-15

    Flow monitoring in porous materials is critical for the engineering of paper-based microfluidic bioassays. Here, we present an electrochemical-sensor system that monitors the liquid flow in porous materials without affecting the real flow in paper-strip samples. The developed microfluidic sensor records an amperometric signal created by the solution movement mediated by paper wicking. This approach allows the in situ monitoring of the different hydrodynamic conditions of a specific paper geometry or composition. In addition, the method proposed in this work was employed to characterise the fluid flow of different nitrocellulose paper strips after oxygen-plasma treatment or dextran coating. The dextran fluid-flow modifiers were further used on the paper strip-based assays as means of signal enhancement. The proposed electrochemical-sensing method offers a valuable alternative to existing optical-based monitoring techniques for flow measurement in paper-based microfluidic systems.

  2. Real-Time Detection and Measurement of Eye Features from Color Images

    PubMed Central

    Borza, Diana; Darabant, Adrian Sergiu; Danescu, Radu

    2016-01-01

    The accurate extraction and measurement of eye features is crucial to a variety of domains, including human-computer interaction, biometry, and medical research. This paper presents a fast and accurate method for extracting multiple features around the eyes: the center of the pupil, the iris radius, and the external shape of the eye. These features are extracted using a multistage algorithm. On the first stage the pupil center is localized using a fast circular symmetry detector and the iris radius is computed using radial gradient projections, and on the second stage the external shape of the eye (of the eyelids) is determined through a Monte Carlo sampling framework based on both color and shape information. Extensive experiments performed on a different dataset demonstrate the effectiveness of our approach. In addition, this work provides eye annotation data for a publicly-available database. PMID:27438838

  3. Real-Time Detection and Measurement of Eye Features from Color Images.

    PubMed

    Borza, Diana; Darabant, Adrian Sergiu; Danescu, Radu

    2016-01-01

    The accurate extraction and measurement of eye features is crucial to a variety of domains, including human-computer interaction, biometry, and medical research. This paper presents a fast and accurate method for extracting multiple features around the eyes: the center of the pupil, the iris radius, and the external shape of the eye. These features are extracted using a multistage algorithm. On the first stage the pupil center is localized using a fast circular symmetry detector and the iris radius is computed using radial gradient projections, and on the second stage the external shape of the eye (of the eyelids) is determined through a Monte Carlo sampling framework based on both color and shape information. Extensive experiments performed on a different dataset demonstrate the effectiveness of our approach. In addition, this work provides eye annotation data for a publicly-available database. PMID:27438838

  4. Non-contact Real-time heart rate measurements based on high speed circuit technology research

    NASA Astrophysics Data System (ADS)

    Wu, Jizhe; Liu, Xiaohua; Kong, Lingqin; Shi, Cong; Liu, Ming; Hui, Mei; Dong, Liquan; Zhao, Yuejin

    2015-08-01

    In recent years, morbidity and mortality of the cardiovascular or cerebrovascular disease, which threaten human health greatly, increased year by year. Heart rate is an important index of these diseases. To address this status, the paper puts forward a kind of simple structure, easy operation, suitable for large populations of daily monitoring non-contact heart rate measurement. In the method we use imaging equipment video sensitive areas. The changes of light intensity reflected through the image grayscale average. The light change is caused by changes in blood volume. We video the people face which include the sensitive areas (ROI), and use high-speed processing circuit to save the video as AVI format into memory. After processing the whole video of a period of time, we draw curve of each color channel with frame number as horizontal axis. Then get heart rate from the curve. We use independent component analysis (ICA) to restrain noise of sports interference, realized the accurate extraction of heart rate signal under the motion state. We design an algorithm, based on high-speed processing circuit, for face recognition and tracking to automatically get face region. We do grayscale average processing to the recognized image, get RGB three grayscale curves, and extract a clearer pulse wave curves through independent component analysis, and then we get the heart rate under the motion state. At last, by means of compare our system with Fingertip Pulse Oximeter, result show the system can realize a more accurate measurement, the error is less than 3 pats per minute.

  5. A Comprehensive Statistically-Based Method to Interpret Real-Time Flowing Measurements

    SciTech Connect

    Keita Yoshioka; Pinan Dawkrajai; Analis A. Romero; Ding Zhu; A. D. Hill; Larry W. Lake

    2007-01-15

    With the recent development of temperature measurement systems, continuous temperature profiles can be obtained with high precision. Small temperature changes can be detected by modern temperature measuring instruments such as fiber optic distributed temperature sensor (DTS) in intelligent completions and will potentially aid the diagnosis of downhole flow conditions. In vertical wells, since elevational geothermal changes make the wellbore temperature sensitive to the amount and the type of fluids produced, temperature logs can be used successfully to diagnose the downhole flow conditions. However, geothermal temperature changes along the wellbore being small for horizontal wells, interpretations of a temperature log become difficult. The primary temperature differences for each phase (oil, water, and gas) are caused by frictional effects. Therefore, in developing a thermal model for horizontal wellbore, subtle temperature changes must be accounted for. In this project, we have rigorously derived governing equations for a producing horizontal wellbore and developed a prediction model of the temperature and pressure by coupling the wellbore and reservoir equations. Also, we applied Ramey's model (1962) to the build section and used an energy balance to infer the temperature profile at the junction. The multilateral wellbore temperature model was applied to a wide range of cases at varying fluid thermal properties, absolute values of temperature and pressure, geothermal gradients, flow rates from each lateral, and the trajectories of each build section. With the prediction models developed, we present inversion studies of synthetic and field examples. These results are essential to identify water or gas entry, to guide flow control devices in intelligent completions, and to decide if reservoir stimulation is needed in particular horizontal sections. This study will complete and validate these inversion studies.

  6. A COMPREHENSIVE STATISTICALLY-BASED METHOD TO INTERPRET REAL-TIME FLOWING MEASUREMENTS

    SciTech Connect

    Pinan Dawkrajai; Analis A. Romero; Keita Yoshioka; Ding Zhu; A.D. Hill; Larry W. Lake

    2004-10-01

    In this project, we are developing new methods for interpreting measurements in complex wells (horizontal, multilateral and multi-branching wells) to determine the profiles of oil, gas, and water entry. These methods are needed to take full advantage of ''smart'' well instrumentation, a technology that is rapidly evolving to provide the ability to continuously and permanently monitor downhole temperature, pressure, volumetric flow rate, and perhaps other fluid flow properties at many locations along a wellbore; and hence, to control and optimize well performance. In this first year, we have made considerable progress in the development of the forward model of temperature and pressure behavior in complex wells. In this period, we have progressed on three major parts of the forward problem of predicting the temperature and pressure behavior in complex wells. These three parts are the temperature and pressure behaviors in the reservoir near the wellbore, in the wellbore or laterals in the producing intervals, and in the build sections connecting the laterals, respectively. Many models exist to predict pressure behavior in reservoirs and wells, but these are almost always isothermal models. To predict temperature behavior we derived general mass, momentum, and energy balance equations for these parts of the complex well system. Analytical solutions for the reservoir and wellbore parts for certain special conditions show the magnitude of thermal effects that could occur. Our preliminary sensitivity analyses show that thermal effects caused by near-wellbore reservoir flow can cause temperature changes that are measurable with smart well technology. This is encouraging for the further development of the inverse model.

  7. Measuring and tracking eye movements of a behaving archer fish by real-time stereo vision.

    PubMed

    Ben-Simon, Avi; Ben-Shahar, Ohad; Segev, Ronen

    2009-11-15

    The archer fish (Toxotes chatareus) exhibits unique visual behavior in that it is able to aim at and shoot down with a squirt of water insects resting on the foliage above water level and then feed on them. This extreme behavior requires excellent visual acuity, learning, and tight synchronization between the visual system and body motion. This behavior also raises many important questions, such as the fish's ability to compensate for air-water refraction and the neural mechanisms underlying target acquisition. While many such questions remain open, significant insights towards solving them can be obtained by tracking the eye and body movements of freely behaving fish. Unfortunately, existing tracking methods suffer from either a high level of invasiveness or low resolution. Here, we present a video-based eye tracking method for accurately and remotely measuring the eye and body movements of a freely moving behaving fish. Based on a stereo vision system and a unique triangulation method that corrects for air-glass-water refraction, we are able to measure a full three-dimensional pose of the fish eye and body with high temporal and spatial resolution. Our method, being generic, can be applied to studying the behavior of marine animals in general. We demonstrate how data collected by our method may be used to show that the hunting behavior of the archer fish is composed of surfacing concomitant with rotating the body around the direction of the fish's fixed gaze towards the target, until the snout reaches in the correct shooting position at water level.

  8. Measuring and tracking eye movements of a behaving archer fish by real-time stereo vision.

    PubMed

    Ben-Simon, Avi; Ben-Shahar, Ohad; Segev, Ronen

    2009-11-15

    The archer fish (Toxotes chatareus) exhibits unique visual behavior in that it is able to aim at and shoot down with a squirt of water insects resting on the foliage above water level and then feed on them. This extreme behavior requires excellent visual acuity, learning, and tight synchronization between the visual system and body motion. This behavior also raises many important questions, such as the fish's ability to compensate for air-water refraction and the neural mechanisms underlying target acquisition. While many such questions remain open, significant insights towards solving them can be obtained by tracking the eye and body movements of freely behaving fish. Unfortunately, existing tracking methods suffer from either a high level of invasiveness or low resolution. Here, we present a video-based eye tracking method for accurately and remotely measuring the eye and body movements of a freely moving behaving fish. Based on a stereo vision system and a unique triangulation method that corrects for air-glass-water refraction, we are able to measure a full three-dimensional pose of the fish eye and body with high temporal and spatial resolution. Our method, being generic, can be applied to studying the behavior of marine animals in general. We demonstrate how data collected by our method may be used to show that the hunting behavior of the archer fish is composed of surfacing concomitant with rotating the body around the direction of the fish's fixed gaze towards the target, until the snout reaches in the correct shooting position at water level. PMID:19698749

  9. Design and Implementation of a DSP-Based MIMO System Prototype for Real-Time Demonstration and Indoor Channel Measurements

    NASA Astrophysics Data System (ADS)

    Mostafa, Raqibul; Gozali, Ran; Palat, Ramesh Chembil; Robert, Max; Newhall, William G.; Woerner, Brian D.; Reed, Jeffrey H.

    2005-12-01

    The design and implementation of the Virginia Tech Space-Time Advanced Radio (VT-STAR), a multiple antenna element space-time (ST) processing prototype testbed, is presented. The testbed is a research tool for comparing practical and theoretical performance metrics (e.g., throughput, link reliability) in different wireless channel conditions. The prototype builds around software-defined radio (SDR) concepts on a DSP platform and provides the flexibility to implement various forms of ST techniques. Different components of the system are described in detail, including the software implementation, I/O schemes with custom hardware, and data transfer mechanisms between the DSP and the host PC. Two different example realizations are presented, a real-time demonstration and an offline measurement tool. Finally, some representative measurement results obtained in indoor environments are presented. These results show VT-STAR to be a promising tool for performing MIMO experiments and generating channel measurements that can complement simulation studies in this area.

  10. Real-time black carbon emission factor measurements from light duty vehicles.

    PubMed

    Forestieri, Sara D; Collier, Sonya; Kuwayama, Toshihiro; Zhang, Qi; Kleeman, Michael J; Cappa, Christopher D

    2013-11-19

    Eight light-duty gasoline low emission vehicles (LEV I) were tested on a Chassis dynamometer using the California Unified Cycle (UC) at the Haagen-Smit vehicle test facility at the California Air Resources Board in El Monte, CA during September 2011. The UC includes a cold start phase followed by a hot stabilized running phase. In addition, a light-duty gasoline LEV vehicle and ultralow emission vehicle (ULEV), and a light-duty diesel passenger vehicle and gasoline direct injection (GDI) vehicle were tested on a constant velocity driving cycle. A variety of instruments with response times ≥0.1 Hz were used to characterize how the emissions of the major particulate matter components varied for the LEVs during a typical driving cycle. This study focuses primarily on emissions of black carbon (BC). These measurements allowed for the determination of BC emission factors throughout the driving cycle, providing insights into the temporal variability of BC emission factors during different phases of a typical driving cycle. PMID:24156818

  11. Real-time black carbon emission factor measurements from light duty vehicles

    NASA Astrophysics Data System (ADS)

    Forestieri, Sara Danielle

    Eight light-duty gasoline low emission vehicles (LEV I) were tested on a Chassis dynamometer using the California Unified Cycle (UC) at the Haagen-Smit vehicle test facility at the California Air Resources Board in El Monte, CA during September 2011. The UC includes a cold start phase followed by a hot stabilized running phase. In addition, a light-duty gasoline LEV vehicle and ultra-low emission vehicle (ULEV), and a light-duty diesel passenger vehicle and gasoline direct injection (GDI) vehicle were tested on a constant velocity driving cycle. A variety of instruments with response times ≥ 0.1 Hz were used to characterize how the emissions of the major PM components varied for the LEVs during a typical driving cycle. This study focuses primarily on emissions of black carbon (BC). These measurements allowed for the determination of BC emission factors throughout the driving cycle, providing insights into the temporal variability of BC emission factors during different phases of a typical driving cycle.

  12. Ozone chemiluminescent detection of olefins: Potential applications for real-time measurements of natural hydrocarbon emissions

    SciTech Connect

    Marley, N.A.; Gaffney, J.S.; Cunningham, M.M.

    1997-10-01

    A chemiluminescence analyzer has been constructed that takes advantage of the temperature dependence of the ozone-hydrocarbon reaction. When operated at a temperature of 170 C, the analyzer functions as a total nonmethane hydrocarbon analyzer with sensitivities 10--1,000 times better than a conventional FID. However, with operation at varying temperatures, the chemiluminescent signal reflects the differences in rates of reaction of the hydrocarbons with ozone. Preliminary studies at room temperature indicated that the relative rates of reaction of isoprene, {alpha}-pinene, {beta}-pinene, and limonene with ozone correlated with the observed chemiluminescence signal. When hydrocarbons are grouped in classes of similar structure, their rates of reaction with electrophilic atmospheric oxidants (e.g., OH, O{sub 3}, NO{sub 3}) can be correlated with each other. By varying the temperature of the reaction chamber, the chemiluminescence analyzer can be tuned to more reactive classes of hydrocarbons. Therefore, the chemiluminescence analyzer has the ability to determine atmospheric hydrocarbon concentrations as a function of class and will also provide a measure of the atmospheric reactivity of the hydrocarbons.

  13. Tutorial: Understanding residual stress in polycrystalline thin films through real-time measurements and physical models

    NASA Astrophysics Data System (ADS)

    Chason, Eric; Guduru, Pradeep R.

    2016-05-01

    Residual stress is a long-standing issue in thin film growth. Better understanding and control of film stress would lead to enhanced performance and reduced failures. In this work, we review how thin film stress is measured and interpreted. The results are used to describe a comprehensive picture that is emerging of what controls stress evolution. Examples from multiple studies are discussed to illustrate how the stress depends on key parameters (e.g., growth rate, material type, temperature, grain size, morphology, etc.). The corresponding stress-generating mechanisms that have been proposed to explain the data are also described. To develop a fuller understanding, we consider the kinetic factors that determine how much each of these processes contributes to the overall stress under different conditions. This leads to a kinetic model that can predict the dependence of the stress on multiple parameters. The model results are compared with the experiments to show how this approach can explain many features of stress evolution.

  14. Real-Time Measurement of Face Recognition in Rapid Serial Visual Presentation

    PubMed Central

    Touryan, Jon; Gibson, Laurie; Horne, James H.; Weber, Paul

    2011-01-01

    Event-related potentials (ERPs) have been used extensively to study the processes involved in recognition memory. In particular, the early familiarity component of recognition has been linked to the FN400 (mid-frontal negative deflection between 300 and 500 ms), whereas the recollection component has been linked to a later positive deflection over the parietal cortex (500–800 ms). In this study, we measured the ERPs elicited by faces with varying degrees of familiarity. Participants viewed a continuous sequence of faces with either low (novel faces), medium (celebrity faces), or high (faces of friends and family) familiarity while performing a separate face-identification task. We found that the level of familiarity was significantly correlated with the magnitude of both the early and late recognition components. Additionally, by using a single-trial classification technique, applied to the entire evoked response, we were able to distinguish between familiar and unfamiliar faces with a high degree of accuracy. The classification of high versus low familiarly resulted in areas under the curve of up to 0.99 for some participants. Interestingly, our classifier model (a linear discriminant function) was developed using a completely separate object categorization task on a different population of participants. PMID:21716601

  15. An evaluation of technologies for real-time measurement of rates of outdoor airflow into HVAC systems

    SciTech Connect

    Fisk, William J.; Faulkner, David; Sullivan, Douglas P.

    2004-09-01

    During the last few years, new technologies have been introduced for real-time continuous measurement of the flow rates of outdoor air (OA) into HVAC systems; however, an evaluation of these measurement technologies has not previously been published. This document describes a test system and protocols developed for a controlled evaluation of these measurement technologies. The results of tests of four commercially available measurement technologies and one prototype based on a new design are also summarized. The test system and protocol were judged practical and very useful. The series of tests identified three commercially available measurement technologies that should provide reasonably accurate measurements of OA flow rates as long as air velocities are maintained high enough to produce accurately measurable pressure signals. In HVAC systems with economizer controls, to maintain the required air velocities the OA intake will need to be divided into two sections in parallel, each with a separate OA damper. The errors in OA flow rates measured with the fourth commercially available measurement technology were 20% to 30% with horizontal probes but much larger with vertical probes. The new prototype measurement technology was the only one that appears suitable for measuring OA flow rates over their full range from 20% OA to 100% OA without using two separate OA dampers. All of the measurement devices had pressure drops that are likely to be judged acceptable. The influence of wind on the accuracy of these measurement technologies still needs to be evaluated.

  16. Real-time Full-spectral Imaging and Affinity Measurements from 50 Microfluidic Channels using Nanohole Surface Plasmon Resonance†

    PubMed Central

    Lee, Si Hoon; Lindquist, Nathan C.; Wittenberg, Nathan J.; Jordan, Luke R.; Oh, Sang-Hyun

    2012-01-01

    With recent advances in high-throughput proteomics and systems biology, there is a growing demand for new instruments that can precisely quantify a wide range of receptor-ligand binding kinetics in a high-throughput fashion. Here we demonstrate a surface plasmon resonance (SPR) imaging spectroscopy instrument capable of extracting binding kinetics and affinities from 50 parallel microfluidic channels simultaneously. The instrument utilizes large-area (~cm2) metallic nanohole arrays as SPR sensing substrates and combines a broadband light source, a high-resolution imaging spectrometer and a low-noise CCD camera to extract spectral information from every channel in real time with a refractive index resolution of 7.7 × 10−6. To demonstrate the utility of our instrument for quantifying a wide range of biomolecular interactions, each parallel microfluidic channel is coated with a biomimetic supported lipid membrane containing ganglioside (GM1) receptors. The binding kinetics of cholera toxin b (CTX-b) to GM1 are then measured in a single experiment from 50 channels. By combining the highly parallel microfluidic device with large-area periodic nanohole array chips, our SPR imaging spectrometer system enables high-throughput, label-free, real-time SPR biosensing, and its full-spectral imaging capability combined with nanohole arrays could enable integration of SPR imaging with concurrent surface-enhanced Raman spectroscopy. PMID:22895607

  17. Real-Time Measurement Of Polyurethane Foam Reactions And Hydrogen-Bonding By FT-IR Spectroscopy

    NASA Astrophysics Data System (ADS)

    Davis, Bradley L.; Harthcock, Matthew A.; Christenson, C. P.; Turner, R. B.

    1989-12-01

    The reaction and hydrogen-bond formation kinetics which occur in polyurethane foams will have an ultimate effect on the properties of these materials. Measurement of several urethane and urea carbonyl absorptions (free and hydrogen-bonded) provides two important pieces of information: (1) the chemical reactions which occur and (2) the progression of hydrogen-bond formation after reaction has completed. An attenuated total reflectance (ATR) Fourier-transform infrared spectroscopic technique has been previously developed which allows real-time data to be obtained during the foaming reaction 1,2. The authors have adapted a similar system to studying foams in order to more quantitatively interpret the real-time data in terms of the complex hydrogen-bonding structure. The vibrational assignments used for the carbonyl region of polyurethane foam spectra are as follows: 1732 cm-1 free urethane 1712 free urea 1701 ordered hydrogen-bonded urethane 1699-1653 monodentate hydrogen-bonded urea (Fig. 1) 1641 bidentate/ordered hydrogen-bonded urea. (Fig. 1)

  18. REAL TIME CONTINUOUS MEASUREMENTS OF [CO2] AND δ13C AT MULTIPLE LOCATIONS USING CAVITY ENHANCED LASER ABSORPTION

    NASA Astrophysics Data System (ADS)

    McAlexander, W. I.; Rau, G. H.; Dobeck, L.; Spangler, L.

    2009-12-01

    A commercial instrument (Los Gatos Research, model 908-0003) utilizing Cavity Enhanced Laser Absorption Spectroscopy was deployed in 2009 at the ZERT carbon release site (Bozeman, MT) for real time measurement of above-ground CO2 concentration and isotope ratio (δ13C). An automated switching system sampled 13 different locations in the field, as well as two known references, over an 8 day period. Real-time Keeling plots were constructed showing distinct signatures of soil (-27.0 ‰) and fossil (-56.0 ‰) sources compared to background air (-8.2 ‰). Instrument performance gave 0.2 ‰ precision with only 100 seconds of averaging per inlet. Sequential sampling of the various inlets gave a temporal and physical mapping of the CO2 release plume that is difficult to obtain using more conventional techniques. The figures show the nature and quality of the data from one of the locations. Details concerning instrument performance, systematics, calibration, and data processing will be discussed. Fig1: Time chart of CO2 concentration and isotope ratio δ13C from one of 13 sample inlet locations at ZERT release field, July, 2009. Fig2: Keeling plot of data from Fig1 illustrating the two source mixing of soil (-27 ‰) and fossil (-56 ‰) CO2 with background air.

  19. Binocular Goggle Augmented Imaging and Navigation System provides real-time fluorescence image guidance for tumor resection and sentinel lymph node mapping.

    PubMed

    Mondal, Suman B; Gao, Shengkui; Zhu, Nan; Sudlow, Gail P; Liang, Kexian; Som, Avik; Akers, Walter J; Fields, Ryan C; Margenthaler, Julie; Liang, Rongguang; Gruev, Viktor; Achilefu, Samuel

    2015-01-01

    The inability to identify microscopic tumors and assess surgical margins in real-time during oncologic surgery leads to incomplete tumor removal, increases the chances of tumor recurrence, and necessitates costly repeat surgery. To overcome these challenges, we have developed a wearable goggle augmented imaging and navigation system (GAINS) that can provide accurate intraoperative visualization of tumors and sentinel lymph nodes in real-time without disrupting normal surgical workflow. GAINS projects both near-infrared fluorescence from tumors and the natural color images of tissue onto a head-mounted display without latency. Aided by tumor-targeted contrast agents, the system detected tumors in subcutaneous and metastatic mouse models with high accuracy (sensitivity = 100%, specificity = 98% ± 5% standard deviation). Human pilot studies in breast cancer and melanoma patients using a near-infrared dye show that the GAINS detected sentinel lymph nodes with 100% sensitivity. Clinical use of the GAINS to guide tumor resection and sentinel lymph node mapping promises to improve surgical outcomes, reduce rates of repeat surgery, and improve the accuracy of cancer staging. PMID:26179014

  20. Binocular Goggle Augmented Imaging and Navigation System provides real-time fluorescence image guidance for tumor resection and sentinel lymph node mapping

    NASA Astrophysics Data System (ADS)

    B. Mondal, Suman; Gao, Shengkui; Zhu, Nan; Sudlow, Gail P.; Liang, Kexian; Som, Avik; Akers, Walter J.; Fields, Ryan C.; Margenthaler, Julie; Liang, Rongguang; Gruev, Viktor; Achilefu, Samuel

    2015-07-01

    The inability to identify microscopic tumors and assess surgical margins in real-time during oncologic surgery leads to incomplete tumor removal, increases the chances of tumor recurrence, and necessitates costly repeat surgery. To overcome these challenges, we have developed a wearable goggle augmented imaging and navigation system (GAINS) that can provide accurate intraoperative visualization of tumors and sentinel lymph nodes in real-time without disrupting normal surgical workflow. GAINS projects both near-infrared fluorescence from tumors and the natural color images of tissue onto a head-mounted display without latency. Aided by tumor-targeted contrast agents, the system detected tumors in subcutaneous and metastatic mouse models with high accuracy (sensitivity = 100%, specificity = 98% ± 5% standard deviation). Human pilot studies in breast cancer and melanoma patients using a near-infrared dye show that the GAINS detected sentinel lymph nodes with 100% sensitivity. Clinical use of the GAINS to guide tumor resection and sentinel lymph node mapping promises to improve surgical outcomes, reduce rates of repeat surgery, and improve the accuracy of cancer staging.

  1. Binocular Goggle Augmented Imaging and Navigation System provides real-time fluorescence image guidance for tumor resection and sentinel lymph node mapping

    PubMed Central

    B. Mondal, Suman; Gao, Shengkui; Zhu, Nan; Sudlow, Gail P.; Liang, Kexian; Som, Avik; Akers, Walter J.; Fields, Ryan C.; Margenthaler, Julie; Liang, Rongguang; Gruev, Viktor; Achilefu, Samuel

    2015-01-01

    The inability to identify microscopic tumors and assess surgical margins in real-time during oncologic surgery leads to incomplete tumor removal, increases the chances of tumor recurrence, and necessitates costly repeat surgery. To overcome these challenges, we have developed a wearable goggle augmented imaging and navigation system (GAINS) that can provide accurate intraoperative visualization of tumors and sentinel lymph nodes in real-time without disrupting normal surgical workflow. GAINS projects both near-infrared fluorescence from tumors and the natural color images of tissue onto a head-mounted display without latency. Aided by tumor-targeted contrast agents, the system detected tumors in subcutaneous and metastatic mouse models with high accuracy (sensitivity = 100%, specificity = 98% ± 5% standard deviation). Human pilot studies in breast cancer and melanoma patients using a near-infrared dye show that the GAINS detected sentinel lymph nodes with 100% sensitivity. Clinical use of the GAINS to guide tumor resection and sentinel lymph node mapping promises to improve surgical outcomes, reduce rates of repeat surgery, and improve the accuracy of cancer staging. PMID:26179014

  2. Evaluation of a method for measuring vehicular PM with a composite filter and a real-time BC instrument

    NASA Astrophysics Data System (ADS)

    Kamboures, Michael A.; Rieger, Paul L.; Zhang, Sherry; Sardar, Satya B.; Chang, M.-C. Oliver; Huang, Shiou-Mei; Dzhema, Inna; Fuentes, Mark; Benjamin, Michael T.; Hebert, Annette; Ayala, Alberto

    2015-12-01

    As part of the California Air Resources Board's effort to confirm the ability of the vehicular particulate matter (PM) reference method (RM) to measure PM emissions at sub-one milligram per mile (mg/mi), and to explore alternative methods, we evaluated a combination method (CM) that utilizes both gravimetric and real-time particle quantification. PM, collected on a single composite filter is apportioned to the three Federal Test Procedure (FTP) cycle phases using real-time equivalent black carbon (EBC) measurements, reducing the need to carry out separate gravimetric filter measurements for each of the test phases. Four light-duty gasoline vehicles, emitting PM at or below one mg/mi, were dynamometer tested repeatedly on the FTP cycle. PM was quantified by the RM and by two variants of the CM. One variant used photoacoustic spectroscopy to measure EBC (CM-MSS), and the other used an Aethalometer (CM-AE51). The CM was evaluated on repeatability, bias, and correlation with the RM. For the tested vehicles, the observed repeatability of the CM was superior to the RM regardless of the mode of EBC measurement or the test vehicle considered (σCM-MSS = 0.08 mg/mi, σCM-AE51 = 0.07 mg/mi, σRM ≈ 0.11 mg/mi). However, the CM was negatively biased by -0.08 mg/mi, versus the RM, in one of the test vehicles. We attribute the bias in this vehicle's data to organic carbon emissions that were not equivalently collected on the composite filter of the CM. When all data were combined, the correlation between the methods was good (R = 0.90 for CM-MSS vs. RM and R = 0.91 for CM-AE51 vs. RM).

  3. Non-negative matrix factorization for the near real-time interpretation of absorption effects in elemental distribution images acquired by X-ray fluorescence imaging.

    PubMed

    Alfeld, Matthias; Wahabzada, Mirwaes; Bauckhage, Christian; Kersting, Kristian; Wellenreuther, Gerd; Barriobero-Vila, Pere; Requena, Guillermo; Boesenberg, Ulrike; Falkenberg, Gerald

    2016-03-01

    Elemental distribution images acquired by imaging X-ray fluorescence analysis can contain high degrees of redundancy and weakly discernible correlations. In this article near real-time non-negative matrix factorization (NMF) is described for the analysis of a number of data sets acquired from samples of a bi-modal α+β Ti-6Al-6V-2Sn alloy. NMF was used for the first time to reveal absorption artefacts in the elemental distribution images of the samples, where two phases of the alloy, namely α and β, were in superposition. The findings and interpretation of the NMF results were confirmed by Monte Carlo simulation of the layered alloy system. Furthermore, it is shown how the simultaneous factorization of several stacks of elemental distribution images provides uniform basis vectors and consequently simplifies the interpretation of the representation. PMID:26917147

  4. A real-time fluorescent sensor specific to Mg2+: crystallographic evidence, DFT calculation and its use for quantitative determination of magnesium in drinking water.

    PubMed

    Men, Guangwen; Chen, Chunrong; Zhang, Shitong; Liang, Chunshuang; Wang, Ying; Deng, Mengyu; Shang, Hongxing; Yang, Bing; Jiang, Shimei

    2015-02-14

    An "off-the-shelf" fluorescence "turn-on" Mg(2+) chemosensor 3,5-dichlorosalicylaldehyde (BCSA) was rationally designed and developed. This proposed sensor works based on Mg(2+)-induced formation of the 2 : 1 BCSA-Mg(2+) complex. The coordination of BSCA to Mg(2+) increases its structural rigidity generating a chelation-enhanced fluorescence (CHEF) effect which was confirmed by single crystal XRD studies of the BSCA-Mg(2+) complex and TD/DFT calculations. This sensor exhibits high sensitivity and selectivity for the quantitative monitoring of Mg(2+) with a wide detection range (0-40 μM), a low detection limit (2.89 × 10(-7) mol L(-1)) and a short response time (<0.5 s). It can also resist the interference from the other co-existing metal ions, especially Ca(2+). Consequently, this fluorescent sensor can be utilized to monitor Mg(2+) in real time within actual samples from drinking water.

  5. Real-time, high-resolution x-ray diffraction measurements on shocked crystals at a synchrotron facility.

    PubMed

    Gupta, Y M; Turneaure, Stefan J; Perkins, K; Zimmerman, K; Arganbright, N; Shen, G; Chow, P

    2012-12-01

    The Advanced Photon Source (APS) at Argonne National Laboratory was used to obtain real-time, high-resolution x-ray diffraction measurements to determine the microscopic response of shock-compressed single crystals. Disk shaped samples were subjected to plane shock wave compression by impacting them with half-inch diameter, flat-faced projectiles. The projectiles were accelerated to velocities ranging between 300 and 1200 m/s using a compact powder gun designed specifically for use at a synchrotron facility. The experiments were designed to keep the sample probed volume under uniaxial strain and constant stress for a duration longer than the 153.4 ns spacing between x-ray bunches. X-rays from a single pulse (<100 ps duration) out of the periodic x-ray pulses emitted by the synchrotron were used for the diffraction measurements. A synchronization and x-ray detection technique was developed to ensure that the measured signal was obtained unambiguously from the desired x-ray pulse incident on the sample while the sample was in a constant uniaxial strain state. The synchronization and x-ray detection techniques described can be used for a variety of x-ray measurements on shock compressed solids and liquids at the APS. Detailed procedures for applying the Bragg-Brentano parafocusing approach to single crystals at the APS are presented. Analytic developments to determine the effects of crystal substructure and non-ideal geometry on the diffraction pattern position and shape are presented. Representative real-time x-ray diffraction data, indicating shock-induced microstructural changes, are presented for a shock-compressed Al(111) sample. The experimental developments presented here provided, in part, the impetus for the Dynamic Compression Sector (DCS) currently under development at the APS. Both the synchronization∕x-ray detection methods and the analysis equations for high-resolution single crystal x-ray diffraction can be used at the DCS.

  6. Real-time, high-resolution x-ray diffraction measurements on shocked crystals at a synchrotron facility

    SciTech Connect

    Gupta, Y. M.; Turneaure, Stefan J.; Perkins, K.; Zimmerman, K.; Arganbright, N.; Shen, G.; Chow, P.

    2012-12-15

    The Advanced Photon Source (APS) at Argonne National Laboratory was used to obtain real-time, high-resolution x-ray diffraction measurements to determine the microscopic response of shock-compressed single crystals. Disk shaped samples were subjected to plane shock wave compression by impacting them with half-inch diameter, flat-faced projectiles. The projectiles were accelerated to velocities ranging between 300 and 1200 m/s using a compact powder gun designed specifically for use at a synchrotron facility. The experiments were designed to keep the sample probed volume under uniaxial strain and constant stress for a duration longer than the 153.4 ns spacing between x-ray bunches. X-rays from a single pulse (<100 ps duration) out of the periodic x-ray pulses emitted by the synchrotron were used for the diffraction measurements. A synchronization and x-ray detection technique was developed to ensure that the measured signal was obtained unambiguously from the desired x-ray pulse incident on the sample while the sample was in a constant uniaxial strain state. The synchronization and x-ray detection techniques described can be used for a variety of x-ray measurements on shock compressed solids and liquids at the APS. Detailed procedures for applying the Bragg-Brentano parafocusing approach to single crystals at the APS are presented. Analytic developments to determine the effects of crystal substructure and non-ideal geometry on the diffraction pattern position and shape are presented. Representative real-time x-ray diffraction data, indicating shock-induced microstructural changes, are presented for a shock-compressed Al(111) sample. The experimental developments presented here provided, in part, the impetus for the Dynamic Compression Sector (DCS) currently under development at the APS. Both the synchronization/x-ray detection methods and the analysis equations for high-resolution single crystal x-ray diffraction can be used at the DCS.

  7. Development of a novel ultrasonic technique for real-time measurement of membrane fouling in reverse osmosis desalination

    NASA Astrophysics Data System (ADS)

    Mairal, Anurag Prabhakar

    1998-09-01

    Fouling is readily acknowledged to be one of the most critical problems with respect to wider application of membranes in liquid separations. The overall thrust of this research was the development of a novel means for in situ monitoring of the membrane fouling process, ultrasonic time-domain reflectometry (UTDR), to provide real-time characterization of the fouling layer. The specific objectives of this research were to adapt UTDR as an analytical tool to study inorganic membrane fouling, to use the information obtained from UTDR to evaluate membrane fouling models in more detail than previously possible, and to develop improved fouling models, if necessary. A completely-automated separation system and a 75 cm-long rectangular module were developed in this work to adapt and optimize UTDR for the measurement of membrane fouling; six measurement ports in the module permitted simultaneous monitoring of permeate flux, permeate concentration, and UTDR response in terms of reflected signal amplitude, as a function of time and axial position. The experimental results obtained using this module show that there is an excellent correspondence between the flux decline behavior and the UTDR response with respect to initiation of fouling. Moreover, the ultrasonic technique was capable of detecting two distinct modes of fouling layer growth at high axial velocities (>=4.6 cm/s); the first mode was characterized by rapid growth of randomly-oriented crystals, and was followed by a second mode exhibiting a more gradual growth of laterally-oriented crystals. In contrast, permeation data were unable to provide any information about the subtle dynamics of the fouling process. In addition to the measurement of fouling, the ultrasonic technique was also successfully employed for monitoring membrane cleaning at ambient conditions. Since no real-time permeation data are available during such cleaning operations in industrial installations, UTDR may prove to be a very useful implement for

  8. Characterising coarse PBA dynamics in real-time above and below a tropical rainforest canopy using a dual channel UV fluorescence aerosol spectrometer.

    NASA Astrophysics Data System (ADS)

    Gabey, A.; Gallagher, M. W.; Burgess, R.; Coe, H.; McFiggans, G.,; Kaye, P. H.; Stanley, W. R.; Davies, F.; Foot, V. E.

    2009-04-01

    single-particle dual channel UV fluorescence spectrometer (Kaye et al., 2008) capable of detecting PBA by inducing fluorescence in two so-called biofluorophores - one present during metabolism and the other an amino acid - in the particle size range 1 m < Dp < 20 m. Real-time PBA measurements were performed above and below the canopy of a tropical rainforest in Borneo, Malaysia as part of the Oxidant and Particle Photochemical Processes (OP3) and the Aerosol Coupling in the Earth System (ACES) projects. PBA were found to dominate the coarse loading at Dp > 2 m. In qualitative agreement with measurements of culturable airborne material in a tropical forest's understory (Gilbert, 2005) a diurnal cycle of PBA number concentration is present, reaching a maximum of ~4000 l-1 at local midnight and falling to ~100 l-1 around midday. The role of the planetary boundary layer's collapse and re-establishment in dictating this variation in is also investigated using LIDAR data. Transient PBA concentration spikes lasting several minutes are superposed on the smooth underlying diurnal variation and occur at similar times each day. Nucleopore filter samples were also taken in-situ and analysed under an Environmental scanning electron microscope (ESEM) in Manchester. The images obtained showed the PBA fraction to be dominated by fungal spores of diameter 2-5 m, from various species including ABM. Since such species tend to release spores in bursts at regular times this appears to account for the PBA concentration spikes.

  9. A real time dynamic data acquisition and processing system for velocity, density, and total temperature fluctuation measurements

    NASA Technical Reports Server (NTRS)

    Clukey, Steven J.

    1991-01-01

    The real time Dynamic Data Acquisition and Processing System (DDAPS) is described which provides the capability for the simultaneous measurement of velocity, density, and total temperature fluctuations. The system of hardware and software is described in context of the wind tunnel environment. The DDAPS replaces both a recording mechanism and a separate data processing system. DDAPS receives input from hot wire anemometers. Amplifiers and filters condition the signals with computer controlled modules. The analog signals are simultaneously digitized and digitally recorded on disk. Automatic acquisition collects necessary calibration and environment data. Hot wire sensitivities are generated and applied to the hot wire data to compute fluctuations. The presentation of the raw and processed data is accomplished on demand. The interface to DDAPS is described along with the internal mechanisms of DDAPS. A summary of operations relevant to the use of the DDAPS is also provided.

  10. Real-time measurement of joint movement using a digital signal processor-based image processing system

    NASA Astrophysics Data System (ADS)

    Moorehead, John D.; Harvey, David M.; Dangerfield, Peter H.; Montgomery, S. C.

    1994-09-01

    A new low cost imaging system has been devised to detect and measure joint movement to help with the diagnosis of ligament injuries in the human knee. The system uses a domestic video camcorder to record the movement of marks on a patient's knee as it is flexed. The pictures are then fed into the imaging system, where the coordinates of each mark are determined for each angle of flexion. The coordinate data is then processed to show the dynamic operation of the knee, from which an assessment of ligament damage can be made. The imaging system is comprised of a PC host, a commercial frame store, and a custom built TMS320C40 digital signal processor (dsp) board. The dsp is used to perform correlation and other imaging functions, to automatically determine the mark coordinates in real time. This paper describes the application and development of the system, and gives the results of the research to date.

  11. Fluorescent sperm offer a method for tracking the real-time success of ejaculates when they compete to fertilise eggs

    PubMed Central

    Lymbery, Rowan A.; Kennington, W. Jason; Evans, Jonathan P.

    2016-01-01

    Despite intensive research effort, many uncertainties remain in the field of gamete-level sexual selection, particularly in understanding how sperm from different males interact when competing for fertilisations. Here, we demonstrate the utility of broadcast spawning marine invertebrates for unravelling these mysteries, highlighting their mode of reproduction and, in some species, unusual patterns of mitochondrial inheritance. We present a method utilising both properties in the blue mussel, Mytilus galloprovincialis. In mytilids and many other bivalves, both sperm and egg mitochondria are inherited. We exploit this, using the vital mitochondrial dye MitoTracker, to track the success of sperm from individual males when they compete with those from rivals to fertilise eggs. We confirm that dying mitochondria has no adverse effects on in vitro measures of sperm motility (reflecting mitochondrial energetics) or sperm competitive fertilisation success. Therefore, we propose the technique as a powerful and logistically tractable tool for sperm competition studies. Importantly, our method allows the competitive fertilisation success of sperm from any male to be measured directly and disentangled from confounding effects of post-fertilisation embryo survival. Moreover, the mitochondrial dye has broader applications in taxa without paternal mitochondrial inheritance, for example by tracking the dynamics of competing ejaculates prior to fertilisation. PMID:26941059

  12. Fluorescent sperm offer a method for tracking the real-time success of ejaculates when they compete to fertilise eggs.

    PubMed

    Lymbery, Rowan A; Kennington, W Jason; Evans, Jonathan P

    2016-01-01

    Despite intensive research effort, many uncertainties remain in the field of gamete-level sexual selection, particularly in understanding how sperm from different males interact when competing for fertilisations. Here, we demonstrate the utility of broadcast spawning marine invertebrates for unravelling these mysteries, highlighting their mode of reproduction and, in some species, unusual patterns of mitochondrial inheritance. We present a method utilising both properties in the blue mussel, Mytilus galloprovincialis. In mytilids and many other bivalves, both sperm and egg mitochondria are inherited. We exploit this, using the vital mitochondrial dye MitoTracker, to track the success of sperm from individual males when they compete with those from rivals to fertilise eggs. We confirm that dying mitochondria has no adverse effects on in vitro measures of sperm motility (reflecting mitochondrial energetics) or sperm competitive fertilisation success. Therefore, we propose the technique as a powerful and logistically tractable tool for sperm competition studies. Importantly, our method allows the competitive fertilisation success of sperm from any male to be measured directly and disentangled from confounding effects of post-fertilisation embryo survival. Moreover, the mitochondrial dye has broader applications in taxa without paternal mitochondrial inheritance, for example by tracking the dynamics of competing ejaculates prior to fertilisation. PMID:26941059

  13. Real time Faraday spectrometer

    DOEpatents

    Smith, Jr., Tommy E.; Struve, Kenneth W.; Colella, Nicholas J.

    1991-01-01

    This invention uses a dipole magnet to bend the path of a charged particle beam. As the deflected particles exit the magnet, they are spatially dispersed in the bend-plane of the magnet according to their respective momenta and pass to a plurality of chambers having Faraday probes positioned therein. Both the current and energy distribution of the particles is then determined by the non-intersecting Faraday probes located along the chambers. The Faraday probes are magnetically isolated from each other by thin metal walls of the chambers, effectively providing real time current-versus-energy particle measurements.

  14. Real-time monitoring in vitro transcription using molecular beacons.

    PubMed

    Liu, Jianwei; Feldman, Patricia; Chung, Thomas D Y

    2002-01-01

    A homogeneous fluorescence-based molecular beacon (MB) method has been developed for real-time monitoring of in vitro transcription reactions. MB probes are structured as target-specific antisense oligodeoxynucleotides containing a proximate fluorophore-quencher pair. Upon binding to its target sequence, the probe undergoes a structural rearrangement that separates the proximate pair, thus dequenching fluorescence. We demonstrate that this simple, inexpensive, rapid, and homogeneous fluorescence-based assay permits real-time monitoring of in vitro transcription and end-point measurement of RNA. The results from the RNA MB assay were comparable to those from other methods.

  15. Influence of measurement depth on the stiffness assessment of healthy liver with real-time shear wave elastography.

    PubMed

    Wang, Cong-Zhi; Zheng, Jian; Huang, Ze-Ping; Xiao, Yang; Song, Dan; Zeng, Jie; Zheng, Hai-Rong; Zheng, Rong-Qin

    2014-03-01

    The purpose of this study was to determine the measurement depth range within which liver stiffness can be reliably assessed using real-time shear wave elastography (SWE) technology. Measurements were performed on phantoms and healthy volunteers. In the first group of patients, measurements were performed at depths of 2-8 cm from the probe surface. In the second group of patients, measurements were conducted 0-7 cm below the liver capsule. Success rate of measurements (SRoM), success rate of patients (SRoS) and coefficients of variation (CVs) of repeated measurements were compared. The SRoMs at 3-7 cm and the CVs at 2-5 cm from the probe surface were significantly higher and lower than those at other depths (p < 0.001), respectively. SRoS was zero 0-1 cm below the liver capsule. Furthermore, the features of 2-D stiffness mapping images were also found to change with depth. According to our results, the depth range for the most reliable liver stiffness assessment using SWE should be 3-5 cm from the probe surface and simultaneously 1-2 cm below the liver capsule.

  16. Use of REMPI-TOFMS for real-time measurement of trace aromatics during operation of aircraft ground equipment

    NASA Astrophysics Data System (ADS)

    Gullett, Brian; Touati, Abderrahmane; Oudejans, Lukas

    Emissions of aromatic air toxics from aircraft ground equipment (AGE) were measured with a resonance enhanced multiphoton ionization-time of flight mass spectrometry (REMPI-TOFMS) system consisting of a pulsed solid state laser for photoionization and a TOFMS for mass discrimination. This instrument was capable of characterizing turbine emissions and the effect of varying load operations on pollutant production. REMPI-TOFMS is capable of high selectivity and low detection limits (part per trillion to part per billion) in real time (1 s resolution). Hazardous air pollutants and criteria pollutants were measured during startups and idle and full load operations. Measurements of compounds such as benzene, toluene, ethylbenzene, xylenes, styrene, and polycyclic aromatic hydrocarbons compared well with standard methods. Startup emissions from the AGE data showed persistent concentrations of pollutants, unlike those from a diesel generator, where a sharp spike in emissions rapidly declined to steady state levels. The time-resolved responses of air toxics concentrations varied significantly by source, complicating efforts to minimize these emissions with common operating prescriptions. The time-resolved measurements showed that pollutant concentrations decline (up to 5×) in a species-specific manner over the course of multiple hours of operation, complicating determination of accurate and precise emission factors via standard extractive sampling. Correlations of air toxic concentrations with more commonly measured pollutants such as CO or PM were poor due to the relatively greater changes in the measured toxics' concentrations.

  17. Radiation dosimetry measurements with real time radiation monitoring device (RRMD)-II in Space Shuttle STS-79.

    PubMed

    Sakaguchi, T; Doke, T; Hayashi, T; Kikuchi, J; Hasebe, N; Kashiwagi, T; Takashima, T; Takahashi, K; Nakano, T; Nagaoka, S; Takahashi, S; Yamanaka, H; Yamaguchi, K; Badhwar, G D

    1997-12-01

    The real-time measurement of radiation environment was made with an improved real-time radiation monitoring device (RRMD)-II onboard Space Shuttle STS-79 (S/MM#4: 4th Shuttle MIR Mission, at an inclination angle of 51.6 degrees and an altitude of 250-400km) for 199 h during 17-25 September, 1996. The observation of the detector covered the linear energy transfer (LET) range of 3.5-6000 keV/micrometer. The Shuttle orbital profile in this mission was equivalent to that of the currently planned Space Station, and provided an opportunity to investigate variations in count rate and dose equivalent rate depending on altitude, longitude, and latitude in detail. Particle count rate and dose equivalent rate were mapped geographically during the mission. Based on the map of count rate, an analysis was made by dividing whole region into three regions: South Atlantic Anomaly (SAA) region, high latitude region and other regions. The averaged absorbed dose rate during the mission was 39.3 microGy/day for a LET range of 3.5-6000 keV/micrometer. The corresponding average dose equivalent rates during the mission are estimated to be 293 microSv/day with quality factors from International Commission on Radiological Protection (ICRP)-Pub. 60 and 270 microSv/day with quality factors from ICRP-Pub. 26. The effective quality factors for ICRP-Pub. 60 and 26 are 7.45 and 6.88, respectively. From the present data for particles of LET > 3.5keV/micrometer, we conclude that the average dose equivalent rate is dominated by the contribution of galactic cosmic ray (GCR) particles. The dose-detector depth dependence was also investigated.

  18. The Smallest R/V: A Small-scale Ocean Exploration Demonstration of Real-time Bathymetric Measurements

    NASA Astrophysics Data System (ADS)

    Howell, S. M.; Boston, B.; Maher, S. M.; Sleeper, J. D.; Togia, H.; Tree, J. P.

    2014-12-01

    In October 2013, graduate student members of the University of Hawaii Geophysical Society designed a small-scale model research vessel (R/V) that uses sonar to create 3D maps of a model seafloor in real-time. This pilot project was presented to the public at the School of Ocean and Earth Science and Technology's (SOEST) Biennial Open House weekend. An estimated 7,600 people attended the two-day event, including children and teachers from Hawaii's schools, home school students, community groups, families, and science enthusiasts. Our exhibit demonstrated real-time sonar mapping of a cardboard volcano using a toy size research vessel on a fixed 2D model ship track suspended above a model seafloor. Sound wave travel times were recorded using an unltrasonic emitter/receiver attached to an Arduino microcontroller platform, while the same system measured displacement along the ship track. This data was streamed through a USB connection to a PC running MatLab, where a 3D model was updated as the ship collected data. Our exhibit demonstrates the practical use of complicated concepts, like wave physics and data processing, in a way that even the youngest elementary students are able to understand. It provides an accessible avenue to learn about sonar mapping, and could easily be adapted to talk about bat and marine mammal echolocation by replacing the model ship and volcano. The exhibit received an overwhelmingly positive response from attendees, and has inspired the group to develop a more interactive model for future exhibitions, using multiple objects to be mapped that participants could arrange, and a more robust ship movement system that participants could operate.

  19. A two-step lyssavirus real-time polymerase chain reaction using degenerate primers with superior sensitivity to the fluorescent antigen test.

    PubMed

    Suin, Vanessa; Nazé, Florence; Francart, Aurélie; Lamoral, Sophie; De Craeye, Stéphane; Kalai, Michael; Van Gucht, Steven

    2014-01-01

    A generic two-step lyssavirus real-time reverse transcriptase polymerase chain reaction (qRT-PCR), based on a nested PCR strategy, was validated for the detection of different lyssavirus species. Primers with 17 to 30% of degenerate bases were used in both consecutive steps. The assay could accurately detect RABV, LBV, MOKV, DUVV, EBLV-1, EBLV-2, and ABLV. In silico sequence alignment showed a functional match with the remaining lyssavirus species. The diagnostic specificity was 100% and the sensitivity proved to be superior to that of the fluorescent antigen test. The limit of detection was ≤ 1 50% tissue culture infectious dose. The related vesicular stomatitis virus was not recognized, confirming the selectivity for lyssaviruses. The assay was applied to follow the evolution of rabies virus infection in the brain of mice from 0 to 10 days after intranasal inoculation. The obtained RNA curve corresponded well with the curves obtained by a one-step monospecific RABV-qRT-PCR, the fluorescent antigen test, and virus titration. Despite the presence of degenerate bases, the assay proved to be highly sensitive, specific, and reproducible.

  20. Real-time reverse transcriptase-polymerase chain reaction (RT-PCR) for measurement of cytokine and growth factor mRNA expression with fluorogenic probes or SYBR Green I.

    PubMed

    Yin, J L; Shackel, N A; Zekry, A; McGuinness, P H; Richards, C; Putten, K V; McCaughan, G W; Eris, J M; Bishop, G A

    2001-06-01

    Real-time quantitative reverse transcriptase-polymerase chain reaction (RT-PCR) is the method of choice for rapid and reproducible measurements of cytokine or growth factor expression in small samples. Fluorescence detection methods for monitoring real-time PCR include fluorogenic probes labelled with reporter and quencher dyes, such as Taqman probes or Molecular Beacons and the dsDNA-binding dye SYBR Green I. Fluorogenic (Taqman) probes for a range of human and rat cytokines and growth factors were tested for sensitivity and compared with an assay for SYBR Green I quantification using real-time fluorescence monitoring (PE Applied Biosystems Model 7700 sequence detector). SYBR Green I detection involved analysis of the melting temperature of the PCR product and measurement of fluorescence at the optimum temperature. Fluorogenic probes provided sensitive and reproducible detection of targets that ranged from low (<10 copies/reaction) to high (>107 copies/ reaction) expression. SYBR Green I gave reproducible quantification when the target gene was expressed at moderate to high levels (> or =1000 copies/reaction), but did not give consistently reproducible quantification when the target gene was expressed at low levels. Although optimization of melting temperature improved the specificity of SYBR Green I detection, in our hands it did not equal the reproducible sensitivity and specificity of fluorogenic probes. The latter method is the first choice for measurement of low-level gene expression, although SYBR Green I is a simple and reproducible means to quantify genes that are expressed at moderate to high levels.

  1. Real-time PCR and enzyme-linked fluorescent assay methods for detecting Shiga-toxin-producing Escherichia coli in mincemeat samples.

    PubMed

    Stefan, A; Scaramagli, S; Bergami, R; Mazzini, C; Barbanera, M; Perelle, S; Fach, P

    2007-03-01

    This work aimed to compare real-time polymerase chain reaction (PCR) with the commercially available enzyme-linked fluorescent assay (ELFA) VIDAS ECOLI O157 for detecting Escherichia coli O157 in mincemeat. In addition, a PCR-based survey on Shiga-toxin-producing E. coli (STEC) in mincemeat collected in Italy is presented. Real-time PCR assays targeting the stx genes and a specific STEC O157 sequence (SILO157, a small inserted locus of STEC O157) were tested for their sensitivity on spiked mincemeat samples. After overnight enrichment, the presence of STEC cells could be clearly determined in the 25 g samples containing 10 bacterial cells, while the addition of five bacteria provided equivocal PCR results with Ct values very close to or above the threshold of 40. The PCR tests proved to be more sensitive than the ELFA-VIDAS ECOLI O157, whose detection level started from 50 bacterial cells/25 g of mincemeat. The occurrence of STEC in 106 mincemeat (bovine, veal) samples collected from September to November 2004 at five different points of sale in Italy (one point of sale in Arezzo, Tuscany, central Italy, two in Mantova, Lombardy, Northern Italy, and two in Bologna, Emilia-Romagna, upper-central Italy) was less than 1%. Contamination by the main STEC O-serogroups representing a major public health concern, including O26, O91, O111, O145, and O157, was not detected. This survey indicates that STEC present in these samples are probably not associated with pathogenesis in humans. PMID:17538642

  2. Real time synchrotron x-ray diffraction measurements to determine material strength of shocked single crystals following compression and release

    SciTech Connect

    Turneaure, Stefan J.; Gupta, Y.M.

    2009-09-15

    We present a method to use real time, synchrotron x-ray diffraction measurements to determine the strength of shocked single crystals following compression and release during uniaxial strain loading. Aluminum and copper single crystals shocked along [111] were examined to peak stresses ranging from 2 to 6 GPa. Synchrotron x rays were used to probe the longitudinal lattice strains near the rear free surface (16 and 5 {micro}m depths for Al and Cu, respectively) of the metal crystals following shock compression and release. The 111 diffraction peaks showed broadening indicating a heterogeneous microstructure in the released state. The diffraction peaks also shifted to lower Bragg angles relative to the ambient Bragg angle; the magnitude of the shift increased with increasing impact stress. The Bragg angle shifts and appropriate averaging procedures were used to determine the macroscopic or continuum strength following compression and release. For both crystals, the strengths upon release increased with increasing impact stress and provide a quantitative measure of the strain hardening that occurs in Al(111) and Cu(111) during the shock and release process. Our results for Al(111) are in reasonable agreement with a previous determination based solely on continuum measurements. Two points are noteworthy about the developments presented here: Synchrotron x rays are needed because they provide the resolution required for analyzing the data in the released state; the method presented here can be extended to the shocked state but will require additional measurements.

  3. Comparison of the mosquito inoculation technique and quantitative real time polymerase chain reaction to measure dengue virus concentration.

    PubMed

    Choy, Milly M; Ellis, Brett R; Ellis, Esther M; Gubler, Duane J

    2013-11-01

    An accurate measure of infectious dengue virus in human and mosquito tissues is critical to fully understand virus-host relationships, disease severity, viral fitness, and pathogenesis. In recent years, RNA copy number measured by quantitative real time-polymerase chain reaction has been used to measure dengue virus concentration in vitro and in vivo. In this study, we detail important differences in the measurement of viral growth kinetics in Vero and C6/36 tissue cultures, in Aedes aegypti mosquitoes, and in viremic human sera using RNA genomic equivalents and mosquito infectious dose 50 (MID50). Although there was reasonably good correlation between the two methods, RNA copy number was 2 to 5 logs greater than infectious virus titers. These differences varied significantly depending on virus strain, viral platform, infectious virus assay, and viral growth phase. The results have important implications for the correct interpretation of biological and epidemiological data from experimental and clinical studies, and show that genomic equivalents should be interpreted with caution when used as a proxy for infectious virus in such studies.

  4. Development of a methodology to measure the effect of ergot alkaloids on forestomach motility using real-time wireless telemetry

    PubMed Central

    Egert, Amanda M.; Klotz, James L.; McLeod, Kyle R.; Harmon, David L.

    2014-01-01

    The objectives of these experiments were to characterize rumen motility patterns of cattle fed once daily using a real-time wireless telemetry system, determine when to measure rumen motility with this system, and determine the effect of ruminal dosing of ergot alkaloids on rumen motility. Ruminally cannulated Holstein steers (n = 8) were fed a basal diet of alfalfa cubes once daily. Rumen motility was measured by monitoring real-time pressure changes within the rumen using wireless telemetry and pressure transducers. Experiment 1 consisted of three 24-h rumen pressure collections beginning immediately after feeding. Data were recorded, stored, and analyzed using iox2 software and the rhythmic analyzer. All motility variables differed (P < 0.01) between hours and thirds (8-h periods) of the day. There were no differences between days for most variables. The variance of the second 8-h period of the day was less than (P < 0.01) the first for area and less than the third for amplitude, frequency, duration, and area (P < 0.05). These data demonstrated that the second 8-h period of the day was the least variable for many measures of motility and would provide the best opportunity for testing differences in motility due to treatments. In Experiment 2, the steers (n = 8) were pair-fed the basal diet of Experiment 1 and dosed with endophyte-free (E−) or endophyte-infected (E+; 0 or 10 μg ergovaline + ergovalinine/kg BW; respectively) tall fescue seed before feeding for 15 d. Rumen motility was measured for 8 h beginning 8 h after feeding for the first 14 d of seed dosing. Blood samples were taken on d 1, 7, and 15, and rumen content samples were taken on d 15. Baseline (P = 0.06) and peak (P = 0.04) pressure were lower for E+ steers. Water intake tended (P = 0.10) to be less for E+ steers the first 8 h period after feeding. The E+ seed treatment at this dosage under thermoneutral conditions did not significantly affect rumen motility, ruminal fill, or dry matter of

  5. Development of a methodology to measure the effect of ergot alkaloids on forestomach motility using real-time wireless telemetry

    NASA Astrophysics Data System (ADS)

    Egert, Amanda; Klotz, James; McLeod, Kyle; Harmon, David

    2014-10-01

    The objectives of these experiments were to characterize rumen motility patterns of cattle fed once daily using a real-time wireless telemetry system, determine when to measure rumen motility with this system, and determine the effect of ruminal dosing of ergot alkaloids on rumen motility. Ruminally cannulated Holstein steers (n = 8) were fed a basal diet of alfalfa cubes once daily. Rumen motility was measured by monitoring real-time pressure changes within the rumen using wireless telemetry and pressure transducers. Experiment 1 consisted of three 24-h rumen pressure collections beginning immediately after feeding. Data were recorded, stored, and analyzed using iox2 software and the rhythmic analyzer. All motility variables differed (P < 0.01) between hours and thirds (8-h periods) of the day. There were no differences between days for most variables. The variance of the second 8-h period of the day was less than (P < 0.01) the first for area and less than the third for amplitude, frequency, duration, and area (P < 0.05). These data demonstrated that the second 8-h period of the day was the least variable for many measures of motility and would provide the best opportunity for testing differences in motility due to treatments. In Exp. 2, the steers (n = 8) were pair-fed the basal diet of Exp. 1 and dosed with endophyte-free (E-) or endophyte-infected (E+; 0 or 10 μg ergovaline + ergovalinine / kg BW; respectively) tall fescue seed before feeding for 15 d. Rumen motility was measured for 8 h beginning 8 h after feeding for the first 14 d of seed dosing. Blood samples were taken on d 1, 7, and 15, and rumen content samples were taken on d 15. Baseline (P = 0.06) and peak (P = 0.04) pressure were lower for E+ steers. Water intake tended (P = 0.10) to be less for E+ steers the first 8 hour period after feeding. The E+ seed treatment at this dosage under thermoneutral conditions did not significantly affect rumen motility, ruminal fill, or dry matter of rumen

  6. Novel automated flow-based immunosensor for real-time measurement of the breast cancer biomarker CA15-3 in serum.

    PubMed

    Darwish, Ibrahim A; Wani, Tanveer A; Khalil, Nasr Y; Blake, Diane A

    2012-08-15

    A novel automated immunosensor assay has been developed for real-time measurement of the breast cancer biomarker CA15-3 in serum. The assay employed the kinetic-exclusion analytical technology of the KinExA™ 3200 instrument. Polymethylmethacrylate (PMMA) beads coated with CA15-3 were used as capturing reagent, mouse anti-CA15-3 monoclonal antibody was used as primary antibody, and the fluorescence was monitored and recorded during the flow of the fluorescent-labeled antibody through the beads. The fluorescence signal retained on the beads was plotted versus CA15-3 concentration to generate a calibration curve. The concentrations of CA15-3 in the samples were then obtained by interpolation on the curve. The assay limit of detection was 0.2 IU mL(-1). This highly sensitive automated system allowed rapid and reliable quantification of CA15-3 without any matrix effect; analytical recovery of serum-spiked CA15-3 was 90.7%-108.6%±2.05%-7.45%. The precision of the sensor was satisfactory; relative standard deviation (RSD) was 3.8%-5.1% and 5.2%-7.4% for the intra- and inter-assay precision, respectively. The analytical performance of the proposed sensor was superior to the non-competitive sandwich immunoassays for CA15-3. The automated analysis by the sensor facilitated the processing of a large number of specimens, and the new sensor-based assay is anticipated to have a great value in measurement of CA15-3.

  7. Evaluation of real-time techniques to measure hydrogen peroxide in air at the permissible exposure limit.

    PubMed

    Puskar, M A; Plese, M R

    1996-09-01

    The major occupational concern from bio-decontamination of equipment using vapor phase hydrogen peroxide (VHP) generation systems is potential operator exposure outside the protective barrier from possible VHP leaks or accidental releases from the sealed piece of equipment during decontamination. For this reason, different real time monitoring techniques were evaluated to determine their ability to accurately measure VHP at concentrations ranging from 0.5 ppm to 5 ppm. The results of this laboratory evaluation suggest that two of the four methods evaluated (the ion mobility spectrometer [IMS] and Polytron) will approximate the National Institute for Occupational Safety and Health +/- 25% accuracy requirements for measuring the concentration of VHP at and near the Occupational Safety and Health Administration permissible exposure limit of 1.0 ppm. Over the range of 0.5 ppm to 5.1 ppm VHP, the IMS had an approximate pooled method accuracy of +/- 21%, while the Polytron had a pooled method accuracy of +/- 22%. However, both instruments had false readings when exposed to nominal concentrations of methanol, bleach, and sulfur dioxide. The two additional VHP monitoring techniques evaluated (the single point monitor [SPM] and Draeger tube) were unable to accurately measure the concentration of VHP when the relative humidity was below 20%.

  8. Real-time Measurement of Membrane Conformational States Induced by Antimicrobial Peptides: Balance Between Recovery and Lysis

    PubMed Central

    Hall, Kristopher; Lee, Tzong-Hsien; Mechler, Adam I.; Swann, Marcus J.; Aguilar, Marie-Isabel

    2014-01-01

    The disruption of membranes by antimicrobial peptides is a multi-state process involving significant structural changes in the phospholipid bilayer. However, direct measurement of these membrane structural changes is lacking. We used a combination of dual polarisation interferometry (DPI), surface plasmon resonance spectroscopy (SPR) and atomic force microscopy (AFM) to measure the real-time changes in membrane structure through the measurement of birefringence during the binding of magainin 2 (Mag2) and a highly potent analogue in which Ser8, Gly13 and Gly18 has been replaced with alanine (Mag-A). We show that the membrane bilayer undergoes a series of structural changes upon peptide binding before a critical threshold concentration is reached which triggers a significant membrane disturbance. We also propose a detailed model for antimicrobial peptide action as a function of the degree of bilayer disruption to provide an unprecedented in-depth understanding of the membrane lysis in terms of the interconversion of different membrane conformational states in which there is a balance between recovery and lysis. PMID:24969959

  9. Multi-site magnetotelluric measurement system with real-time data analysis. Final technical report No. 210

    SciTech Connect

    Becker, J.D.; Bostick, F.X. Jr.; Smith, H.W.

    1981-09-01

    A magnetotelluric measurement system has been designed to provide a more cost effective electrical method for geothermal and mineral exploration. The theoretical requirements and sensitivities of the magnetotelluric inversion process were specifically addressed in determining system performance requirements. Significantly reduced instrument noise levels provide improved data quality, and simultaneous measurement at up to six locations provides reduced cost per site. Remotely located, battery powered, instrumentation packages return data to a central controlling site through a 2560 baud wire-line or radio link. Each remote package contains preamplifiers, data conditioning filters, and a 12-bit gain ranging A-D converter for frequencies from 0.001 Hz to 8 Hz. Data frequencies above 8 Hz are processed sequentially by a heterodyne receiver to reduce bandwidth to within the limits of the 2560 baud data link. The central data collection site provides overall control for the entire system. The system operator interacts with the system through a CRT terminal, and he receives hard copy from a matrix graphics printer. Data from the remote packages may be recorded in time sequence on a magnetic tape cartridge system, or an optional Hewlett-Packard 21MX minicomputer can be used to perform real-time frequency analysis. The results of this analysis provide feedback to the operator for improved evaluation of system performance and for selection of future measurement sites.

  10. A Real-time Electrical Impedance Based Technique to Measure Invasion of Endothelial Cell Monolayer by Cancer Cells

    PubMed Central

    Rahim, Said; Üren, Aykut

    2011-01-01

    Metastatic dissemination of malignant cells requires degradation of basement membrane, attachment of tumor cells to vascular endothelium, retraction of endothelial junctions and finally invasion and migration of tumor cells through the endothelial layer to enter the bloodstream as a means of transport to distant sites in the host1-3. Once in the circulatory system, cancer cells adhere to capillary walls and extravasate to the surrounding tissue to form metastatic tumors4,5. The various components of tumor cell-endothelial cell interaction can be replicated in vitro by challenging a monolayer of human umbilical vein endothelial cells (HUVEC) with cancer cells. Studies performed with electron and phase-contrast microscopy suggest that the in vitro sequence of events fairly represent the in vivo metastatic process6. Here, we describe an electrical-impedance based technique that monitors and quantifies in real-time the invasion of endothelial cells by malignant tumor cells. Giaever and Keese first described a technique for measuring fluctuations in impedance when a population of cells grow on the surface of electrodes7,8. The xCELLigence instrument, manufactured by Roche, utilizes a similar technique to measure changes in electrical impedance as cells attach and spread in a culture dish covered with a gold microelectrode array that covers approximately 80% of the area on the bottom of a well. As cells attach and spread on the electrode surface, it leads to an increase in electrical impedance9-12. The impedance is displayed as a dimensionless parameter termed cell-index, which is directly proportional to the total area of tissue-culture well that is covered by cells. Hence, the cell-index can be used to monitor cell adhesion, spreading, morphology and cell density. The invasion assay described in this article is based on changes in electrical impedance at the electrode/cell interphase, as a population of malignant cells invade through a HUVEC monolayer (Figure 1). The

  11. Using microchip electrophoresis for real-time aerosol composition measurements: Field study results from San Gorgonio Wilderness, California

    NASA Astrophysics Data System (ADS)

    Evanoski-Cole, A. R.; Hecobian, A.; Lewis, G. S.; Hering, S. V.; Henry, C. S.; Collett, J. L.

    2012-12-01

    The detrimental impacts of atmospheric aerosol on human and ecosystem health, visibility and climate change have been studied extensively. However, the role of aerosol composition in these issues still needs further investigation due to the variability of aerosol particles over both time and space. The need for better temporal and spatial resolution of aerosol composition measurements is addressed in the development of a real-time instrument using microchip capillary electrophoresis. Termed Aerosol microChip Electrophoresis (ACE), this lab-on-a-chip instrument is inexpensive to manufacture, portable and provides sensitive real-time and semi-continuous aerosol composition measurements. A water condensation growth tube is used to enlarge water soluble aerosol particles with an aerodynamic diameter less than 2.5 μm. The aqueous sample is continuously collected by impaction into a sample reservoir on a custom designed microchip. A rapid separation of select aerosol components is achieved using microchip capillary electrophoresis coupled with conductivity detection. Here we present data from a recent field campaign in the San Gorgonio Wilderness in south western California. This unique high elevation wilderness site located to the east of the heavily populated cities of San Bernardino and Los Angeles provides a contrast of both clean background and aged urban aerosol as dictated by the meteorological conditions at the site. Ambient aerosol particles were continuously collected at a flow rate of 0.7 L/min into a liquid sample with a volume of 16.7 μL and then analyzed for sulfate, nitrate, chloride and oxalate every 48 seconds. When comparing the ambient concentrations with the meteorological conditions, the most notable trend was high nitrate and sulfate concentrations in ambient aerosol during upslope wind events, with values reaching as high as 34 and 5 μg/m3, respectively. Comparison aerosol composition measurements from filter samples and a particle

  12. NEAR-REAL-TIME MEASUREMENT OF TRACE VOLATILE ORGANIC COMPOUNDS FROM COMBUSTION PROCESSES USING AN ON-LINE GAS CHROMATOGRAPH

    EPA Science Inventory

    The U.S. EPA's current regulatory approach for combustion and incineration sources emphasizes the use of real-time continuous emission monitors (CEMs) for particulate, Metals, and volatile, semivolatile, and of nonvolatile organic compounds to monitor source emissions. Currently...

  13. Carbon nanotube multi-electrode array chips for noninvasive real-time measurement of dopamine, action potentials, and postsynaptic potentials.

    PubMed

    Suzuki, Ikuro; Fukuda, Mao; Shirakawa, Keiichi; Jiko, Hideyasu; Gotoh, Masao

    2013-11-15

    Multi-electrode arrays (MEAs) can be used for noninvasive, real-time, and long-term recording of electrophysiological activity and changes in the extracellular chemical microenvironment. Neural network organization, neuronal excitability, synaptic and phenotypic plasticity, and drug responses may be monitored by MEAs, but it is still difficult to measure presynaptic activity, such as neurotransmitter release, from the presynaptic bouton. In this study, we describe the development of planar carbon nanotube (CNT)-MEA chips that can measure both the release of the neurotransmitter dopamine as well as electrophysiological responses such as field postsynaptic potentials (fPSPs) and action potentials (APs). These CNT-MEA chips were fabricated by electroplating the indium-tin oxide (ITO) microelectrode surfaces. The CNT-plated ITO electrode exhibited electrochemical response, having much higher current density compared with the bare ITO electrode. Chronoamperometric measurements using these CNT-MEA chips detected dopamine at nanomolar concentrations. By placing mouse striatal brain slices on the CNT-MEA chip, we successfully measured synaptic dopamine release from spontaneous firings with a high S/N ratio of 62. Furthermore, APs and fPSPs were measured from cultured hippocampal neurons and slices with high temporal resolution and a 100-fold greater S/N ratio. Our CNT-MEA chips made it possible to measure neurotransmitter dopamine (presynaptic activities), postsynaptic potentials, and action potentials, which have a central role in information processing in the neuronal network. CNT-MEA chips could prove useful for in vitro studies of stem cell differentiation, drug screening and toxicity, synaptic plasticity, and pathogenic processes involved in epilepsy, stroke, and neurodegenerative diseases. PMID:23774164

  14. CoWS: Continuous Water Sampler for CRDS-based, real-time measurements of water isotopes

    NASA Astrophysics Data System (ADS)

    Carter, J.; Huang, K.; Dennis, K. J.

    2014-12-01

    Stable isotopes of water (δ18O and δD) are unique tracers for studying hydrological and associated processes. High spatial and temporal resolution measurements of water isotopes are necessary to follow the dynamics in rapidly changing systems and to map out the spatial heterogeneity of water circulation and mixing. Here we present results of the first commercially available Continuous Water Sampler Module (CoWS) that can be coupled to a Picarro L2130-i Cavity Ring-Down Spectrometer (CRDS) for real-time measurements of water isotopes. The CoWS is a compact and fully automated system with its core method modified from that of Munksgaard et al. (2011). Liquid water is continuously pumped into an extraction chamber, where water vapor diffuses through a micro-poruous polytetrafluoroethylene (ePTFE) membrane. The vapor is then carried by a dry carrier gas to the L2130-i for high precision measurements of δ18O and δD. The inlet water, carrier gas, and surface of the ePTFE membrane are actively temperature controlled to maintain a stable amount of fractionation of water isotopes across the membrane, which minimizes measurement drift. We have tested the CoWS-CRDS system with various inlet water types (tap water, deionized water, and seawater), and under operational conditions with variable ambient water and air temperatures. CoWS-CRDS has high precision (< 0.05 and < 0.15 ‰ 1σ, 5 minute average for δ18O and δD, respectively) and low drift water isotope measurements, with short response time (<5 minutes to eliminate 98% of the memory). The CoWS software is user configurable; allowing automated sampling among up to four water sources with user defined sampling durations. Additionally, we will present isotopic measurements with high-temporal resolution of an estuarine system where tidal changes affected the isotopic composition of the estuary.

  15. Real-time 3-D shape measurement with composite phase-shifting fringes and multi-view system.

    PubMed

    Tao, Tianyang; Chen, Qian; Da, Jian; Feng, Shijie; Hu, Yan; Zuo, Chao

    2016-09-01

    In recent years, fringe projection has become an established and essential method for dynamic three-dimensional (3-D) shape measurement in different fields such as online inspection and real-time quality control. Numerous high-speed 3-D shape measurement methods have been developed by either employing high-speed hardware, minimizing the number of pattern projection, or both. However, dynamic 3-D shape measurement of arbitrarily-shaped objects with full sensor resolution without the necessity of additional pattern projections is still a big challenge. In this work, we introduce a high-speed 3-D shape measurement technique based on composite phase-shifting fringes and a multi-view system. The geometry constraint is adopted to search the corresponding points independently without additional images. Meanwhile, by analysing the 3-D position and the main wrapped phase of the corresponding point, pairs with an incorrect 3-D position or a considerable phase difference are effectively rejected. All of the qualified corresponding points are then corrected, and the unique one as well as the related period order is selected through the embedded triangular wave. Finally, considering that some points can only be captured by one of the cameras due to the occlusions, these points may have different fringe orders in the two views, so a left-right consistency check is employed to eliminate those erroneous period orders in this case. Several experiments on both static and dynamic scenes are performed, verifying that our method can achieve a speed of 120 frames per second (fps) with 25-period fringe patterns for fast, dense, and accurate 3-D measurement.

  16. Real-time 3-D shape measurement with composite phase-shifting fringes and multi-view system.

    PubMed

    Tao, Tianyang; Chen, Qian; Da, Jian; Feng, Shijie; Hu, Yan; Zuo, Chao

    2016-09-01

    In recent years, fringe projection has become an established and essential method for dynamic three-dimensional (3-D) shape measurement in different fields such as online inspection and real-time quality control. Numerous high-speed 3-D shape measurement methods have been developed by either employing high-speed hardware, minimizing the number of pattern projection, or both. However, dynamic 3-D shape measurement of arbitrarily-shaped objects with full sensor resolution without the necessity of additional pattern projections is still a big challenge. In this work, we introduce a high-speed 3-D shape measurement technique based on composite phase-shifting fringes and a multi-view system. The geometry constraint is adopted to search the corresponding points independently without additional images. Meanwhile, by analysing the 3-D position and the main wrapped phase of the corresponding point, pairs with an incorrect 3-D position or a considerable phase difference are effectively rejected. All of the qualified corresponding points are then corrected, and the unique one as well as the related period order is selected through the embedded triangular wave. Finally, considering that some points can only be captured by one of the cameras due to the occlusions, these points may have different fringe orders in the two views, so a left-right consistency check is employed to eliminate those erroneous period orders in this case. Several experiments on both static and dynamic scenes are performed, verifying that our method can achieve a speed of 120 frames per second (fps) with 25-period fringe patterns for fast, dense, and accurate 3-D measurement. PMID:27607632

  17. Design and Validation of a Compressive Tissue Stimulator with High-Throughput Capacity and Real-Time Modulus Measurement Capability

    PubMed Central

    Salvetti, David J.; Pino, Christopher J.; Manuel, Steven G.; Dallmeyer, Ian; Rangarajan, Sanjeet V.; Meyer, Tobias; Kotov, Misha

    2012-01-01

    Mechanical stimulation has been shown to impact the properties of engineered hyaline cartilage constructs and is relevant for engineering of cartilage and osteochondral tissues. Most mechanical stimulators developed to date emphasize precision over adaptability to standard tissue culture equipment and protocols. The realization of mechanical characteristics in engineered constructs approaching native cartilage requires the optimization of complex variables (type of stimulus, regimen, and bimolecular signals). We have proposed and validated a stimulator design that focuses on high construct capacity, compatibility with tissue culture plastic ware, and regimen adaptability to maximize throughput. This design utilizes thin force sensors in lieu of a load cell and a linear encoder to verify position. The implementation of an individual force sensor for each sample enables the measurement of Young's modulus while stimulating the sample. Removable and interchangeable Teflon plungers mounted using neodymium magnets contact each sample. Variations in plunger height and design can vary the strain and force type on individual samples. This allows for the evaluation of a myriad of culture conditions and regimens simultaneously. The system was validated using contact accuracy, and Young's modulus measurements range as key parameters. Contact accuracy for the system was excellent within 1.16% error of the construct height in comparison to measurements made with a micrometer. Biomaterials ranging from bioceramics (cancellous bone, 123 MPa) to soft gels (1% agarose, 20 KPa) can be measured without any modification to the device. The accuracy of measurements in conjunction with the wide range of moduli tested demonstrate the unique characteristics of the device and the feasibility of using this device in mapping real-time changes to Young's modulus of tissue constructs (cartilage, bone) through the developmental phases in ex vivo culture conditions. PMID:21988089

  18. NAP1-assisted nucleosome assembly on DNA measured in real time by single-molecule magnetic tweezers.

    PubMed

    Vlijm, Rifka; Smitshuijzen, Jeremy S J; Lusser, Alexandra; Dekker, Cees

    2012-01-01

    While many proteins are involved in the assembly and (re)positioning of nucleosomes, the dynamics of protein-assisted nucleosome formation are not well understood. We study NAP1 (nucleosome assembly protein 1) assisted nucleosome formation at the single-molecule level using magnetic tweezers. This method allows to apply a well-defined stretching force and supercoiling density to a single DNA molecule, and to study in real time the change in linking number, stiffness and length of the DNA during nucleosome formation. We observe a decrease in end-to-end length when NAP1 and core histones (CH) are added to the dsDNA. We characterize the formation of complete nucleosomes by measuring the change in linking number of DNA, which is induced by the NAP1-assisted nucleosome assembly, and which does not occur for non-nucleosomal bound histones H3 and H4. By rotating the magnets, the supercoils formed upon nucleosome assembly are removed and the number of assembled nucleosomes can be counted. We find that the compaction of DNA at low force is about 56 nm per assembled nucleosome. The number of compaction steps and associated change in linking number indicate that NAP1-assisted nucleosome assembly is a two-step process. PMID:23050009

  19. Real-time measurement of flow rate in microfluidic devices using a cantilever-based optofluidic sensor.

    PubMed

    Cheri, Mohammad Sadegh; Latifi, Hamid; Sadeghi, Jalal; Moghaddam, Mohammadreza Salehi; Shahraki, Hamidreza; Hajghassem, Hasan

    2014-01-21

    Real-time and accurate measurement of flow rate is an important reqirement in lab on a chip (LOC) and micro total analysis system (μTAS) applications. In this paper, we present an experimental and numerical investigation of a cantilever-based optofluidic flow sensor for this purpose. Two sensors with thin and thick cantilevers were fabricated by engraving a 2D pattern of cantilever/base on two polymethylmethacrylate (PMMA) slabs using a CO2 laser system and then casting a 2D pattern with polydimethylsiloxane (PDMS). The basic working principle of the sensor is the fringe shift of the Fabry-Pérot (FP) spectrum due to a changing flow rate. A Finite Element Method (FEM) is used to solve the three dimensional (3D) Navier-Stokes and structural deformation equations to simulate the pressure distribution, velocity and cantilever deflection results of the flow in the channel. The experimental results show that the thin and thick cantilevers have a minimum detectable flow change of 1.3 and 4 (μL min(-1)) respectively. In addition, a comparison of the numerical and experimental deflection of the cantilever has been done to obtain the effective Young's modulus of the thin and thick PDMS cantilevers. PMID:24291805

  20. Development of In-Situ Erosion Measurement Techniques for Application to Real-Time Determination of Plasma Thruster Component Lifetimes

    NASA Technical Reports Server (NTRS)

    2004-01-01

    This research has resulted in advancing the laser-based diagnostic capability and the ion optics development in the ion propulsion program at NASA GRC. Laser-based plasma diagnostics have been demonstrated in tabletop experiments and, in the case of LDI, on laboratory hollow cathodes. Assessment by GRC of its resources and priorities two years into the grant lead to a refocusing of the research effort away from the development of a real-time erosion rate measurement technique. The extension of the diagnostic techniques to diagnostic tools has been transferred to graduate students under the technical direction of the PI. These diagnostics may facilitate the development of ion thruster with significantly improved throughput capability for lower-power (10 kW) missions High-Isp, Long-lived ion optics development has proceeded from simple extensions of state-of-the-art geometries to radically different geometries and materials. Full-scale testing of these ion optics has demonstrated a significant advance in the throughput capability of ion thrusters enabling significantly more demanding missions. The capability to predict the throughput was developed and will continue to be upgraded. The performance models have been validated via full-scale testing. Partial validation of the throughput prediction will be completed via an upcoming wear test of the ion optics.

  1. Real-time monitoring of hypertrophy in HL-1 cardiomyocytes by impedance measurements reveals different modes of growth.

    PubMed

    Bloch, Laura; Ndongson-Dongmo, Bernadin; Kusch, Angelika; Dragun, Duska; Heller, Regine; Huber, Otmar

    2016-10-01

    Hypertrophic growth is a response of the heart to increased mechanical load or physiological stress. Thereby, cardiomyocytes grow in length and/or width to maintain cardiac pump function. Major signaling pathways involved in cardiomyocyte growth and remodeling have been identified during recent years including calcineurin-NFAT and PI3K-Akt signaling. Modulation of these pathways is of certain interest for therapeutic treatment of cardiac hypertrophy. However, quantification and characterization of hypertrophy in response to different stimuli or modulators is difficult. This study aims to test different read-out systems for detection and quantification of differences in hypertrophic growth in response to prohypertrophic stimuli. Real-time impedance measurements allowed the detection of distinct differences in hypertrophic growth in response to endothelin, norepinephrine, phenylephrine or BIO, which were not observable by other methods such as flow cytometry. Endothelin treatment induced a rapid and strong peak in the impedance signal concomitant with a massive reorientation of the actin cytoskeleton. Changes in expression of hypertrophy-associated genes were detected and stabilization of β-catenin was identified as a common response to all hypertrophic stimuli used in this study. Hypertrophic growth was blocked by the PI3K/mTOR inhibitor PI-103.

  2. New Approach for Near-Real-Time Measurement of Elemental Composition of Aerosol Using Laser-Induced Breakdown Spectroscopy

    PubMed Central

    Diwakar, Prasoon; Kulkarni, Pramod; Birch, M. Eileen

    2015-01-01

    A new approach has been developed for making near-real-time measurement of elemental composition of aerosols using plasma spectroscopy. The method allows preconcentration of miniscule particle mass (pg to ng) directly from the sampled aerosol stream through electrostatic deposition of charged particles (30–900 nm) onto a flat-tip microneedle electrode. The collected material is subsequently ablated from the electrode and monitored by laser-induced breakdown spectroscopy. Atomic emission spectra were collected using a broadband spectrometer with a wavelength range of 200–980 nm. A single-sensor delay time of 1.3 μs was used in the spectrometer for all elements to allow simultaneous measurement of multiple elements. The system was calibrated for various elements including Cd, Cr, Cu, Mn, Na, and Ti. The absolute mass detection limits for these elements were experimentally determined and found to be in the range of 0.018–5 ng. The electrostatic collection technique has many advantages over other substrate-based methods involving aerosol collection on a filter or its focused deposition using an aerodynamic lens. Because the particle mass is collected over a very small area that is smaller than the spatial extent of the laser-induced plasma, the entire mass is available for analysis. This considerably improves reliability of the calibration and enhances measurement accuracy and precision. Further, the aerosol collection technique involves very low pressure drop, thereby allowing higher sample flow rates with much smaller pumps—a desirable feature for portable instrumentation. Higher flow rates also make it feasible to measure trace element concentrations at part per trillion levels. Detection limits in the range of 18–670 ng m−3 can be achieved for most of the elements studied at a flow rate of 1.5 L min−1 with sampling times of 5 min. PMID:26692632

  3. Rapid and accurate detection of the CFTR gene mutation 1811+1.6 kbA>G by real-time fluorescence resonance energy transfer PCR.

    PubMed

    Reboul, Marie-Pierre; Higueret, Laurent; Biteau, Nicolas; Iron, Albert

    2005-10-01

    The CFTR gene mutation 1811+1.6 kbA>G has been reported as associated with a severe phenotype of cystic fibrosis with pancreatic insufficiency. This mutation has been identified as a rather common one in the South West of France and in the Iberian Peninsula. Because of the precise geographical origin of the subjects and its frequency, the mutation has to be investigated with accuracy. We have developed an original real-time Fluorescence Resonance Energy Transfer (FRET) PCR assay for genotyping the mutation 1811+1.6 kbA>G. It is based on the amplification of a region spanning the mutation with simultaneous detection of the amplicon by hybridization with a bi-probe followed by a melting curve analysis. The results obtained are identical with those resulting from either restriction fragment length polymorphism analysis or sequencing. The distinction between the wild type and the mutation 1811+1.6 kbA>G is easy because the corresponding melting points shows a difference of 6 or 9.5 degrees C depending on the associated SNP A/T located 16 bp downstream. We demonstrated that a FRET assay showed enough sensitivity to discriminate between two nucleotide polymorphisms (SNPs) in the sequence of the sensor. In conclusion, this method is specific, fast, easy to perform, reproducible, inexpensive as it uses only one bi-probe and well adapted to daily practice.

  4. Detection of trace anthracene in soil samples with real-time fluorescence quantitative immuno-PCR using a molecular beacon probe.

    PubMed

    Ye, Qi-Yan; Zhuang, Hui-Sheng; Zhou, Chun

    2009-11-01

    We developed a highly sensitive and robust real-time fluorescence quantitative immuno-PCR (RTFQ-IPCR) method which uses molecular beacon (MB) probe to detect trace anthracene in the environment. This method was performed on serial dilutions of known anthracene concentrations equivalent to 10-fold dilutions of 10fg/mL to 100pg/mL. We obtained a linear relationship between 10fg/mL and 100pg/mL, with y=0.684x+13.221. A correlation coefficient of 0.994 was also identified, with a detection limit of 4.5fg/mL. After investigating the presence of anthracene in soil samples via RTFQ-IPCR, the obtained concentrations were confirmed by ELISA to be correct and believable, with the recovery ratio ranging from 82% to 112.5%. Based on its sensitivity and reproducibility, MB-based RTFQ-IPCR was found to be acceptable for use in on-site field tests to provide rapid, quantitative, and reliable test results for making environmental decisions.

  5. Inline real-time near-infrared granule moisture measurements of a continuous granulation-drying-milling process.

    PubMed

    Chablani, Lipika; Taylor, Michael K; Mehrotra, Amit; Rameas, Patrick; Stagner, William C

    2011-12-01

    The purpose of this research was to use inline real-time near-infrared (NIR) to measure the moisture content of granules manufactured using a commercial production scale continuous twin-screw granulator fluid-bed dryer milling process. A central composite response surface statistical design was used to study the effect of inlet air temperature and dew point on granule moisture content. The NIR moisture content was compared to Karl Fischer (KF) and loss on drying (LOD) moisture determinations. Using multivariate analysis, the data showed a statistically significant correlation between the conventional methods and NIR. The R(2) values for predicted moisture content by NIR versus KF and predicted moisture values by NIR versus LOD were 0.94 (p < 0.00001) and 0.85 (p < 0.0002), respectively. The adjusted R(2) for KF versus LOD correlation was 0.85 (p < 0.0001). Analysis of the response surface design data showed that inlet air temperature over a range of 35-55°C had a significant linear impact on granule moisture content as measured by predicted NIR (adjusted R(2) = 0.84, p < 0.02), KF (adjusted R(2) = 0.91, p < 0.0001), and LOD (adjusted R(2) = 0.85, p < 0.0006). The inlet air dew point range of 10-20°C did not have a significant impact on any of the moisture measurements.

  6. Real-time monitoring and measurement of wax deposition in pipelines via non-invasive electrical capacitance tomography

    NASA Astrophysics Data System (ADS)

    Lock Sow Mei, Irene; Ismail, Idris; Shafquet, Areeba; Abdullah, Bawadi

    2016-02-01

    Tomographic analysis of the behavior of waxy crude oil in pipelines is important to permit appropriate corrective actions to be taken to remediate the wax deposit layer before pipelines are entirely plugged. In this study, a non-invasive/non-intrusive electrical capacitance tomography (ECT) system has been applied to provide real-time visualization of the formation of paraffin waxes and to measure the amount of wax fraction from the Malay Basin waxy crude oil sample under the static condition. Analogous expressions to estimate the wax fraction of the waxy crude oil across the temperatures range of 30-50 °C was obtained by using Otsu’s and Kuo’s threshold algorithms. Otsu’s method suggested that the wax fraction can be estimated by the correlation coefficient β =0.0459{{T}3}-5.3535{{T}2}+200.36T-2353.7 while Kuo’s method provides a similar correlation with β =0.0741{{T}3}-8.4915{{T}2}+314.96T-3721.2 . These correlations show good agreements with the results which are obtained from the conventional weighting method. This study suggested that Kuo’s threshold algorithm is more promising when integrated into the ECT system compared to Otsu’s algorithm because the former provides higher accuracy wax fraction measurement results below the wax appearance temperature for waxy crude oil. This study is significant because it serves as a preliminary investigation for the application of ECT in the oil and gas industry for online measurement and detection of wax fraction without causing disturbance to the process flow.

  7. Relative indexes of cutaneous blood perfusion measured by real-time laser Doppler imaging (LDI) in healthy volunteers.

    PubMed

    Seyed Jafari, S Morteza; Schawkat, Megir; Van De Ville, Dimitri; Shafighi, Maziar

    2014-07-01

    We used real-time LDI to study regional variations in microcirculatory perfusion in healthy candidates to establish a new methodology for global perfusion body mapping that is based on intra-individual perfusion index ratios. Our study included 74 (37 female) healthy volunteers aged between 22 and 30 years (mean 24.49). Imaging was performed using a recent microcirculation-imaging camera (EasyLDI) for different body regions of each volunteer. The perfusion values were reported in Arbitrary Perfusion Units (APU). The relative perfusion indexes for each candidate's body region were then obtained by normalization with the perfusion value of the forehead. Basic parameters such as weight, height, and blood pressure were also measured and analyzed. The highest mean perfusion value was reported in the forehead area (259.21APU). Mean perfusion in the measured parts of the body correlated positively with mean forehead value, while there was no significant correlation between forehead blood perfusion values and room temperature, BMI, systolic blood pressure and diastolic blood pressure (p=0.420, 0.623, 0.488, 0.099, respectively). Analysis of the data showed that perfusion indexes were not significantly different between male and female volunteers except for the ventral upper arm area (p=.001). LDI is a non-invasive, fast technique that opens several avenues for clinical applications. The mean perfusion indexes are useful in clinical practice for monitoring patients before and after surgical interventions. Perfusion values can be predicted for different body parts for patients only by taking the forehead perfusion value and using the perfusion index ratios to obtain expected normative perfusion values. PMID:24788075

  8. Relative indexes of cutaneous blood perfusion measured by real-time laser Doppler imaging (LDI) in healthy volunteers.

    PubMed

    Seyed Jafari, S Morteza; Schawkat, Megir; Van De Ville, Dimitri; Shafighi, Maziar

    2014-07-01

    We used real-time LDI to study regional variations in microcirculatory perfusion in healthy candidates to establish a new methodology for global perfusion body mapping that is based on intra-individual perfusion index ratios. Our study included 74 (37 female) healthy volunteers aged between 22 and 30 years (mean 24.49). Imaging was performed using a recent microcirculation-imaging camera (EasyLDI) for different body regions of each volunteer. The perfusion values were reported in Arbitrary Perfusion Units (APU). The relative perfusion indexes for each candidate's body region were then obtained by normalization with the perfusion value of the forehead. Basic parameters such as weight, height, and blood pressure were also measured and analyzed. The highest mean perfusion value was reported in the forehead area (259.21APU). Mean perfusion in the measured parts of the body correlated positively with mean forehead value, while there was no significant correlation between forehead blood perfusion values and room temperature, BMI, systolic blood pressure and diastolic blood pressure (p=0.420, 0.623, 0.488, 0.099, respectively). Analysis of the data showed that perfusion indexes were not significantly different between male and female volunteers except for the ventral upper arm area (p=.001). LDI is a non-invasive, fast technique that opens several avenues for clinical applications. The mean perfusion indexes are useful in clinical practice for monitoring patients before and after surgical interventions. Perfusion values can be predicted for different body parts for patients only by taking the forehead perfusion value and using the perfusion index ratios to obtain expected normative perfusion values.

  9. The reproducibility of fetal crown rump length measurements obtained with real time ultrasound systems compared with those of a conventional B-scanner.

    PubMed

    Parker, A J; Docker, M F; Davies, P; Newton, J R

    1981-07-01

    Comparison of the reproducibility of fetal crown rump length measurements (CRL) obtained in a resting state by sonar with a phase focused linear array real time scanner, a real time mechanical sector scanner, and a static B-scanner did not show any significant differences between machines. Maternal movement was found to produce a change in fetal intrauterine position and to induce fetal movement. Examination following maternal movement was felt to be more representative of clinical conditions and produced greater variability of CRL measurement, shown by all machines to a differing extent, although the differences between machines were not substantial. There is some evidence that the discernment of fetal movement and the quality of fetal echoes obtained with different machines affects the reproducibility of CRL measurement. Thus variability of CRL measurement with every machine is small in terms of gestational age and justifies the use of real time machines to establish gestational age.

  10. Real-time in situ measurements of volcanic plume physico-chemical properties using Controlled METeorological balloons

    NASA Astrophysics Data System (ADS)

    Durant, Adam; Voss, Paul; Watson, Matthew; Roberts, Tjarda; Thomas, Helen; Prata, Fred; Sutton, Jeff; Mather, Tamsin; Witt, Melanie; Patrick, Matthew

    2010-05-01

    While the climatic effects of volcanogenic sulphate aerosol in the stratosphere are well characterised, the nature and global impact of sustained tropospheric volcanic degassing is less well understood. In situ measurement of volcanic emissions can be used to understand plume processes (e.g., microphysics and chemistry), and used to validate and improve remote sensing techniques. New developments in sensor and communication technologies have led to the production of miniaturized lightweight unmanned atmospheric measurement platforms. Controlled METeorological (CMET) balloons collect real-time observations of atmospheric physico-chemical properties at altitudes of up to 5 km for hours or even days at a time. Standard measurements include pressure (± 10 mb), aspirated temperature (± 0.3 C), relative humidity (± 5 %) and location (GPS position ± 5 m horizontal, ± 50 m vertical). Balloon platform-based measurements of volcanic plume properties were made for the first time using CMET balloons equipped with miniature electrochemical sensors during the eruption of Halema'uma'u crater (Kilauea) in Hawai'i in 2008. In addition, multiple measurement platforms were simultaneously deployed that included (1) ground-based remote measurements (mini-DOAS and UV camera); (2) satellite-based sensors (MODIS and OMI); and (3) in situ sampling at the emission source using ground-based electrochemical sensor instrumentation. During the 25 July 2008 flight, a single CMET balloon remained in the plume and collected data for several hours. Ratios of [H2O] and [SO2] correlate in proximal regions of the plume, though were found to anti-correlate further downwind. Correlation is explained through co-emission of SO2 and H2O at source, as has been frequently previously observed e.g. by FTIR. Anti-correlation of [H2O] and [SO2] ratios has not previously been reported and may reflect dehydration of the aged plume through condensation of water vapour on volcanogenic sulphate aerosol. The

  11. Leptin in Whales: Validation and Measurement of mRNA Expression by Absolute Quantitative Real-Time PCR

    PubMed Central

    Ball, Hope C.; Holmes, Robert K.; Londraville, Richard L.; Thewissen, Johannes G. M.; Duff, Robert Joel

    2013-01-01

    Leptin is the primary hormone in mammals that regulates adipose stores. Arctic adapted cetaceans maintain enormous adipose depots, suggesting possible modifications of leptin or receptor function. Determining expression of these genes is the first step to understanding the extreme physiology of these animals, and the uniqueness of these animals presents special challenges in estimating and comparing expression levels of mRNA transcripts. Here, we compare expression of two model genes, leptin and leptin-receptor gene-related product (OB-RGRP), using two quantitative real-time PCR (qPCR) methods: “relative” and “absolute”. To assess the expression of leptin and OB-RGRP in cetacean tissues, we first examined how relative expression of those genes might differ when normalized to four common endogenous control genes. We performed relative expression qPCR assays measuring the amplification of these two model target genes relative to amplification of 18S ribosomal RNA (18S), ubiquitously expressed transcript (Uxt), ribosomal protein 9 (Rs9) and ribosomal protein 15 (Rs15) endogenous controls. Results demonstrated significant differences in the expression of both genes when different control genes were employed; emphasizing a limitation of relative qPCR assays, especially in studies where differences in physiology and/or a lack of knowledge regarding levels and patterns of expression of common control genes may possibly affect data interpretation. To validate the absolute quantitative qPCR methods, we evaluated the effects of plasmid structure, the purity of the plasmid standard preparation and the influence of type of qPCR “background” material on qPCR amplification efficiencies and copy number determination of both model genes, in multiple tissues from one male bowhead whale. Results indicate that linear plasmids are more reliable than circular plasmid standards, no significant differences in copy number estimation based upon background material used, and

  12. Accurate measurement of circulating mitochondrial DNA content from human blood samples using real-time quantitative PCR.

    PubMed

    Ajaz, Saima; Czajka, Anna; Malik, Afshan

    2015-01-01

    We describe a protocol to accurately measure the amount of human mitochondrial DNA (MtDNA) in peripheral blood samples which can be modified to quantify MtDNA from other body fluids, human cells, and tissues. This protocol is based on the use of real-time quantitative PCR (qPCR) to quantify the amount of MtDNA relative to nuclear DNA (designated the Mt/N ratio). In the last decade, there have been increasing numbers of studies describing altered MtDNA or Mt/N in circulation in common nongenetic diseases where mitochondrial dysfunction may play a role (for review see Malik and Czajka, Mitochondrion 13:481-492, 2013). These studies are distinct from those looking at genetic mitochondrial disease and are attempting to identify acquired changes in circulating MtDNA content as an indicator of mitochondrial function. However, the methodology being used is not always specific and reproducible. As more than 95 % of the human mitochondrial genome is duplicated in the human nuclear genome, it is important to avoid co-amplification of nuclear pseudogenes. Furthermore, template preparation protocols can also affect the results because of the size and structural differences between the mitochondrial and nuclear genomes. Here we describe how to (1) prepare DNA from blood samples; (2) pretreat the DNA to prevent dilution bias; (3) prepare dilution standards for absolute quantification using the unique primers human mitochondrial genome forward primer (hMitoF3) and human mitochondrial genome reverse primer(hMitoR3) for the mitochondrial genome, and human nuclear genome forward primer (hB2MF1) and human nuclear genome reverse primer (hB2MR1) primers for the human nuclear genome; (4) carry out qPCR for either relative or absolute quantification from test samples; (5) analyze qPCR data; and (6) calculate the sample size to adequately power studies. The protocol presented here is suitable for high-throughput use.

  13. Leptin in whales: validation and measurement of mRNA expression by absolute quantitative real-time PCR.

    PubMed

    Ball, Hope C; Holmes, Robert K; Londraville, Richard L; Thewissen, Johannes G M; Duff, Robert Joel

    2013-01-01

    Leptin is the primary hormone in mammals that regulates adipose stores. Arctic adapted cetaceans maintain enormous adipose depots, suggesting possible modifications of leptin or receptor function. Determining expression of these genes is the first step to understanding the extreme physiology of these animals, and the uniqueness of these animals presents special challenges in estimating and comparing expression levels of mRNA transcripts. Here, we compare expression of two model genes, leptin and leptin-receptor gene-related product (OB-RGRP), using two quantitative real-time PCR (qPCR) methods: "relative" and "absolute". To assess the expression of leptin and OB-RGRP in cetacean tissues, we first examined how relative expression of those genes might differ when normalized to four common endogenous control genes. We performed relative expression qPCR assays measuring the amplification of these two model target genes relative to amplification of 18S ribosomal RNA (18S), ubiquitously expressed transcript (Uxt), ribosomal protein 9 (Rs9) and ribosomal protein 15 (Rs15) endogenous controls. Results demonstrated significant differences in the expression of both genes when different control genes were employed; emphasizing a limitation of relative qPCR assays, especially in studies where differences in physiology and/or a lack of knowledge regarding levels and patterns of expression of common control genes may possibly affect data interpretation. To validate the absolute quantitative qPCR methods, we evaluated the effects of plasmid structure, the purity of the plasmid standard preparation and the influence of type of qPCR "background" material on qPCR amplification efficiencies and copy number determination of both model genes, in multiple tissues from one male bowhead whale. Results indicate that linear plasmids are more reliable than circular plasmid standards, no significant differences in copy number estimation based upon background material used, and that the use of

  14. REAL-TIME MODELING AND MEASUREMENT OF MOBILE SOURCE POLLUTANT CONCENTRATIONS FOR ESTIMATING HUMAN EXPOSURES IN COMMUNITIES NEAR ROADWAYS

    EPA Science Inventory

    The United States Environmental Protection Agency's (EPA) National Exposure Research Laboratory (NERL) is pursuing a project to improve the methodology for real-time site specific modeling of human exposure to pollutants from motor vehicles. The overall project goal is to deve...

  15. EVALUATION OF QUANTITATIVE REAL TIME PCR FOR THE MEASUREMENT OF HELICOBATER PYLORI AT LOW CONCENTRATIONS IN DRINKING WATER

    EPA Science Inventory

    Aims: To determine the performance of a rapid, real time polymerase chain reaction (PCR) method for the detection and quantitative analysis Helicobacter pylori at low concentrations in drinking water.

    Methods and Results: A rapid DNA extraction and quantitative PCR (QPCR)...

  16. Measure it, See it, Manage it: Using Real Time Data to Benchmark,Optimize, and Sustain System Energy Efficiency

    SciTech Connect

    Taranto, Thomas; McKane, Aimee; Amon, Ricardo; Maulhardt, Michael

    2007-07-02

    Even after years of training and awareness building at thestate and national level, industrial cross-cutting systems (motor-driven,steam, process heating) continue to offer significant opportunities forenergy savings. The US Department of Energy estimates these remainingsavings at more than 7 percent of all industrial energy use. This paperpresents a different approach to promoting industrial system energyefficiency -- providing plant personnel with ready access to data uponwhich to base energy management decisions.In 2005, a Del Monte Foodsfruit processing plant in Modesto, California worked with LawrenceBerkeley National Laboratory (LBNL)to specify and purchase permanentinstrumentation for monitoring their compressed air system. This work,completed as part of a demonstration project under a State TechnologiesAdvancement Collaborative (STAC) grant, was designed to demonstrate theeffectiveness of enterprise energy management (EEM), which is predicatedon the assumption that the energy efficiency of existing, cross-cuttingindustrial systems (motor-driven, steam) can be improved by providingmanagement and operating personnel with real-time data on energy use. Theinitial STAC grant provided for the installation and some initialanalyses, but did not address the larger issue of integrating these newdata into an ongoing energy management program for the compressed airsystem.The California Energy Commission (CEC) decided to support furtheranalysis to identify potential for air system optimization. Through theCEC's Energy in Agriculture Program, a compressed air system audit wasperformed by Tom Taranto to: Measure and document the system's baselineand CASE Index of present operation; Establish methods to sustain anongoing CASE Index measure of performance; Use AIRMaster+ to analyzesupply side performance as compared to the CASE Index; Identify demandside opportunities for efficiency and performance improvement; Assesssupply / demand balance and energy reduction

  17. Development of a Real-Time Fluorescence Loop-Mediated Isothermal Amplification Assay for Rapid and Quantitative Detection of Fusarium oxysporum f. sp. cubense Tropical Race 4 In Soil

    PubMed Central

    Pu, Jinji; Qi, Yanxiang; Yu, Qunfang; Xie, Yixian; Peng, Jun

    2013-01-01

    Fusarium oxysporum f. sp. cubense (Foc), the causal agent of Fusarium wilt (Panama disease), is one of the most devastating diseases of banana (Musa spp.). The Foc tropical race 4 (TR4) is currently known as a major concern in global banana production. No effective resistance is known in Musa to Foc, and no effective measures for controlling Foc once banana plants have been infected in place. Early and accurate detection of Foc TR4 is essential to protect banana industry and guide banana planting. A real-time fluorescence loop-mediated isothermal amplification assay (RealAmp) was developed for the rapid and quantitative detection of Foc TR4 in soil. The detection limit of the RealAmp assay was approximately 0.4 pg/µl plasmid DNA when mixed with extracted soil DNA or 103 spores/g of artificial infested soil, and no cross-reaction with other relative pathogens were observed. The RealAmp assay for quantifying genomic DNA of TR4 was confirmed by testing both artificially and naturally infested samples. Quantification of the soil-borne pathogen DNA of Foc TR4 in naturally infested samples was no significant difference compared to classic real-time PCR (P>0.05). Additionally, RealAmp assay was visual with an improved closed-tube visual detection system by adding SYBR Green I fluorescent dye to the inside of the lid prior to amplification, which avoided the inhibitory effects of the stain on DNA amplification and makes the assay more convenient in the field and could thus become a simple, rapid and effective technique that has potential as an alternative tool for the detection and monitoring of Foc TR4 in field, which would be a routine DNA-based testing service for the soil-borne pathogen in South China. PMID:24376590

  18. Development of a real-time fluorescence loop-mediated isothermal amplification assay for rapid and quantitative detection of Fusarium oxysporum f. sp. cubense tropical race 4 in soil.

    PubMed

    Zhang, Xin; Zhang, He; Pu, Jinji; Qi, Yanxiang; Yu, Qunfang; Xie, Yixian; Peng, Jun

    2013-01-01

    Fusarium oxysporum f. sp. cubense (Foc), the causal agent of Fusarium wilt (Panama disease), is one of the most devastating diseases of banana (Musa spp.). The Foc tropical race 4 (TR4) is currently known as a major concern in global banana production. No effective resistance is known in Musa to Foc, and no effective measures for controlling Foc once banana plants have been infected in place. Early and accurate detection of Foc TR4 is essential to protect banana industry and guide banana planting. A real-time fluorescence loop-mediated isothermal amplification assay (RealAmp) was developed for the rapid and quantitative detection of Foc TR4 in soil. The detection limit of the RealAmp assay was approximately 0.4 pg/µl plasmid DNA when mixed with extracted soil DNA or 10(3) spores/g of artificial infested soil, and no cross-reaction with other relative pathogens were observed. The RealAmp assay for quantifying genomic DNA of TR4 was confirmed by testing both artificially and naturally infested samples. Quantification of the soil-borne pathogen DNA of Foc TR4 in naturally infested samples was no significant difference compared to classic real-time PCR (P>0.05). Additionally, RealAmp assay was visual with an improved closed-tube visual detection system by adding SYBR Green I fluorescent dye to the inside of the lid prior to amplification, which avoided the inhibitory effects of the stain on DNA amplification and makes the assay more convenient in the field and could thus become a simple, rapid and effective technique that has potential as an alternative tool for the detection and monitoring of Foc TR4 in field, which would be a routine DNA-based testing service for the soil-borne pathogen in South China.

  19. Quantification of human telomerase reverse transcriptase mRNA in testicular germ cell tumors by quantitative fluorescence real-time RT-PCR.

    PubMed

    Schrader, Mark; Burger, Angelika M; Müller, Markus; Krause, Hans; Straub, Bernd; Smith, Gilian L; Newlands, Eward S; Miller, Kurt

    2002-01-01

    Telomerase is a ribonucleoprotein enzyme which is endogenously expressed in germ, stem and tumor cells, but absent in benign somatic cells. The two major telomerase components are human telomerase RNA (hTR) and human telomerase reverse transcriptase (hTERT). It has been shown that hTERT is rate-limiting for telomerase activity and that it plays a central role in human carcinogenesis. Here, we investigated the potential of hTERT and hTR gene expression as diagnostic markers in testicular germ cell tumors (TGCT). hTERT mRNA and hTR expression were quantified in 55 testicular germ cell tumors comprising 36 primary and 19 germ cell tumors from retroperitonal sides by fluorescence real-time RT-PCR using the LightCycler technology. Porphobilinogen deaminase (PBGD) was used as housekeeping gene and to enable relative quantification. For comparison to TGCTs, 38 benign testicular biopsies from patients with fertility disorders were assayed. hTERT expression was detected in all examined undifferentiated TGCTs and in the benign testicular tissue specimens with germ cell content (N(hTERT) 38-127). In contrast, mature teratomas from primary and post-chemotherapy masses, which are characterized by well-differentiated tissue components showed a nearly complete downregulation of hTERT expression (N(hTERT) 2-4, p<0.001). hTR levels however, were high in all tumors and independently of the presence of germ cells also in the benign tissue control group. hTERT mRNA is expressed in all undifferentiated TGCTs but repressed in mature teratomas. This suggests an inverse correlation between the differentiation status of germ cell tumors and hTERT expression. Thus, detection of hTERT expression in tumors histopathologically classified as mature teratomas enables a molecular-diagnostic confirmation and might aid decision making for treatment of patients presenting with this tumor subtype.

  20. Prognostic Significance of Mixed-Lineage Leukemia (MLL) Gene Detected by Real-Time Fluorescence Quantitative PCR Assay in Acute Myeloid Leukemia

    PubMed Central

    Huang, Sai; Yang, Hua; Li, Yan; Feng, Cong; Gao, Li; Chen, Guo-feng; Gao, Hong-hao; Huang, Zhi; Li, Yong-hui; Yu, Li

    2016-01-01

    Background The overall prognosis of acute myeloid leukemia (AML) patients with mixed-lineage leukemia (MLL) gene-positivity is unfavorable. In this study, we evaluated the expression levels of the MLL gene in AML patients. Material/Methods We enrolled 68 MLL gene-positive patients out of 433 newly diagnosed AML patients, and 216 bone marrow samples were collected. Real-time fluorescence quantitative PCR (RQ-PCR) was used to precisely detect the expression levels of the MLL gene. Results We divided 41 patients into 2 groups according to the variation of MRD (minimal residual disease) level of the MLL gene. Group 1 (n=22) had a rapid reduction of MRD level to ≤10−4 in all samples collected in the first 3 chemotherapy cycles, while group 2 (n=19) had MRD levels constantly >10−4 in all samples collected in the first 3 chemotherapy cycles. Group 1 had a significantly better overall survival (p=0.001) and event-free survival (p=0.001) compared to group 2. Moreover, the patients with >10−4 MRD level before the start of HSCT (hematopoietic stem cell transplantation) had worse prognosis and higher risk of relapse compared to patients with ≤10−4 before the start of HSCT. Conclusions We found that a rapid reduction of MRD level to ≤10−4 appears to be a prerequisite for better overall survival and event-free survival during the treatment of AML. The MRD levels detected by RQ-PCR were basically in line with the clinical outcome and may be of great importance in guiding early allogeneic HSCT (allo-HSCT) treatment. PMID:27561414

  1. Automatic measurement of pennation angle and fascicle length of gastrocnemius muscles using real-time ultrasound imaging.

    PubMed

    Zhou, Guang-Quan; Chan, Phoebe; Zheng, Yong-Ping

    2015-03-01

    Muscle imaging is a promising field of research to understand the biological and bioelectrical characteristics of muscles through the observation of muscle architectural change. Sonomyography (SMG) is a technique which can quantify the real-time architectural change of muscles under different contractions and motions with ultrasound imaging. The pennation angle and fascicle length are two crucial SMG parameters to understand the contraction mechanics at muscle level, but they have to be manually detected on ultrasound images frame by frame. In this study, we proposed an automatic method to quantitatively identify pennation angle and fascicle length of gastrocnemius (GM) muscle based on multi-resolution analysis and line feature extraction, which could overcome the limitations of tedious and time-consuming manual measurement. The method started with convolving Gabor wavelet specially designed for enhancing the line-like structure detection in GM ultrasound image. The resulting image was then used to detect the fascicles and aponeuroses for calculating the pennation angle and fascicle length with the consideration of their distribution in ultrasound image. The performance of this method was tested on computer simulated images and experimental images in vivo obtained from normal subjects. Tests on synthetic images showed that the method could identify the fascicle orientation with an average error less than 0.1°. The result of in vivo experiment showed a good agreement between the results obtained by the automatic and the manual measurements (r=0.94±0.03; p<0.001, and r=0.95±0.02, p<0.001). Furthermore, a significant correlation between the ankle angle and pennation angle (r=0.89±0.05; p<0.001) and fascicle length (r=-0.90±0.04; p<0.001) was found for the ankle plantar flexion. This study demonstrated that the proposed method was able to automatically measure the pennation angle and fascicle length of GM ultrasound images, which made it feasible to investigate

  2. Learning to pronounce Vowel Sounds in a Foreign Language Using Acoustic Measurements of the Vocal Tract as Feedback in Real Time.

    ERIC Educational Resources Information Center

    Dowd, Annette; Smith, John; Wolfe, Joe

    1998-01-01

    Measured the first two vowel-tract resonances of a sample of native-French speakers for the non-nasalized vowels of that language. Values measured for native speakers for a particular vowel were used as target parameters for subjects who used a visual display of an impedance spectrum of their own vocal tracts as real time feedback to realize the…

  3. Real-Time Secondary Aerosol Formation Measurements using a Photooxidation Reactor (PAM) and AMS in Urban Air and Biomass Smoke

    NASA Astrophysics Data System (ADS)

    Ortega, A. M.; Cubison, M.; Hayes, P. L.; Brune, W. H.; Hu, W.; Flynn, J. H.; Grossberg, N.; Lefer, B. L.; Alvarez, S. L.; Rappenglueck, B.; Bon, D.; Graus, M.; Warneke, C.; Gilman, J. B.; Kuster, W. C.; De Gouw, J. A.; Sullivan, A. P.; Jimenez, J. L.

    2011-12-01

    Recent field studies reveal large formation of secondary organic aerosol (SOA) under urban polluted ambient conditions, while SOA formation in biomass burning smoke appears to be variable but sometimes substantial. To study this formation in real-time, a Potential Aerosol Mass (PAM) photooxidation reactor was deployed with submicron aerosol size and chemical composition measurements during two studies: FLAME-3, a biomass-burning study at USDA Fire Sciences Laboratory in Missoula in 2009, MT and CalNex-LA in Pasadena, CA in 2010. A high-resolution aerosol mass spectrometer (HR-AMS) and a scanning mobility particle sizer (SMPS) alternated sampling unprocessed and PAM-processed aerosol. The PAM reactor produces OH concentrations up to 4 orders of magnitude higher than in ambient air, achieving equivalent aging of ~2 weeks in 5 minutes of processing. The OH intensity was also scanned every 20 min. in both field studies. Results show the value of PAM-AMS as a tool for in-situ evaluation of changes in OA concentration and composition due to SOA formation and POA oxidation. In FLAME-3, net SOA formation was variable among smokes from different biomasses; however, OA oxidation was always observed. The average SOA enhancement factor was 1.7 +/- 0.5 of the initial POA. Reactive VOCs such as toluene, monoterpenes, and acetaldehyde, as measured from a PIT-MS, decreased with increased PAM processing; however, formic acid, acetone, and some unidentified OVOCs increased after significant exposure to high oxidant levels suggesting multigenerational chemistry. Results from CalNex-LA show enhancement of SOA and inorganic aerosol from gas-phase precursors. This enhanced OA mass increase from PAM processing is maximum at night and correlates with trimethylbenzene concentrations, which indicates the dominance of short-lived SOA precursors in the LA Basin. A traditional SOA model with mostly aromatic precursors underpredicts the amount of SOA formed by about an order-of-magnitude, which

  4. In-Situ, Real-Time Measurement of Melt Constituents in the Aluminum, Glass, and Steel Industries

    SciTech Connect

    Robert De Saro

    2006-05-18

    Energy Research Company (ERCo), with support from DOE’s Industrial Technologies Program, Sensors and Automation has developed a Laser Induced Breakdown Spectroscopy (LIBS) probe to measure, in real