Science.gov

Sample records for reconstructed dynamic forces

  1. Reconstruction of dynamic forces during impact tests of a crushable structure

    SciTech Connect

    Bateman, V.I.; Carne, T.G.; Mayes, R.L.; Davie, N.T.

    1993-12-31

    A force reconstruction technique is being used to assess the dynamic performance of a crushable structure (a bomb nose) in both the axial (90{degree}) and slapdown (30{degree}) impact conditions. The dynamic force characteristics for the current nose design, determined from these tests, will be used to write a dynamic force specification for a new nose design that will replace the current nose. Two structures for experimentally determining the dynamic force -- deflection characteristics of the old and new noses have been designed and constructed. One structure has the same dynamic characteristics as the bomb and is being used for axial and slapdown orientations with rocket-propelled testing. The second structure has the same mass as the bomb and is being used for iterative axial testing of candidate designs with a pneumatic ram. The structural characteristics of these two structures have been determined and are presented. A force reconstruction algorithm using the Sum of Weighted Accelerations Technique (SWAT) has been developed for each of the two structures. The force reconstruction algorithms have been verified for both structures using laboratory data. The force reconstruction process and the resulting algorithms are described. Data verifying the force reconstruction algorithms is presented.

  2. An ab initio approach to free-energy reconstruction using logarithmic mean force dynamics

    SciTech Connect

    Nakamura, Makoto Obata, Masao; Morishita, Tetsuya; Oda, Tatsuki

    2014-05-14

    We present an ab initio approach for evaluating a free energy profile along a reaction coordinate by combining logarithmic mean force dynamics (LogMFD) and first-principles molecular dynamics. The mean force, which is the derivative of the free energy with respect to the reaction coordinate, is estimated using density functional theory (DFT) in the present approach, which is expected to provide an accurate free energy profile along the reaction coordinate. We apply this new method, first-principles LogMFD (FP-LogMFD), to a glycine dipeptide molecule and reconstruct one- and two-dimensional free energy profiles in the framework of DFT. The resultant free energy profile is compared with that obtained by the thermodynamic integration method and by the previous LogMFD calculation using an empirical force-field, showing that FP-LogMFD is a promising method to calculate free energy without empirical force-fields.

  3. An ab initio approach to free-energy reconstruction using logarithmic mean force dynamics

    NASA Astrophysics Data System (ADS)

    Nakamura, Makoto; Obata, Masao; Morishita, Tetsuya; Oda, Tatsuki

    2014-05-01

    We present an ab initio approach for evaluating a free energy profile along a reaction coordinate by combining logarithmic mean force dynamics (LogMFD) and first-principles molecular dynamics. The mean force, which is the derivative of the free energy with respect to the reaction coordinate, is estimated using density functional theory (DFT) in the present approach, which is expected to provide an accurate free energy profile along the reaction coordinate. We apply this new method, first-principles LogMFD (FP-LogMFD), to a glycine dipeptide molecule and reconstruct one- and two-dimensional free energy profiles in the framework of DFT. The resultant free energy profile is compared with that obtained by the thermodynamic integration method and by the previous LogMFD calculation using an empirical force-field, showing that FP-LogMFD is a promising method to calculate free energy without empirical force-fields.

  4. An ab initio approach to free-energy reconstruction using logarithmic mean force dynamics.

    PubMed

    Nakamura, Makoto; Obata, Masao; Morishita, Tetsuya; Oda, Tatsuki

    2014-05-14

    We present an ab initio approach for evaluating a free energy profile along a reaction coordinate by combining logarithmic mean force dynamics (LogMFD) and first-principles molecular dynamics. The mean force, which is the derivative of the free energy with respect to the reaction coordinate, is estimated using density functional theory (DFT) in the present approach, which is expected to provide an accurate free energy profile along the reaction coordinate. We apply this new method, first-principles LogMFD (FP-LogMFD), to a glycine dipeptide molecule and reconstruct one- and two-dimensional free energy profiles in the framework of DFT. The resultant free energy profile is compared with that obtained by the thermodynamic integration method and by the previous LogMFD calculation using an empirical force-field, showing that FP-LogMFD is a promising method to calculate free energy without empirical force-fields.

  5. Dynamic Reconstruction and Multivariable Control for Force-Actuated, Thin Facesheet Adaptive Optics

    NASA Technical Reports Server (NTRS)

    Grocott, Simon C. O.; Miller, David W.

    1997-01-01

    The Multiple Mirror Telescope (MMT) under development at the University of Arizona takes a new approach in adaptive optics placing a large (0.65 m) force-actuated, thin facesheet deformable mirror at the secondary of an astronomical telescope, thus reducing the effects of emissivity which are important in IR astronomy. However, The large size of the mirror and low stiffness actuators used drive the natural frequencies of the mirror down into the bandwidth of the atmospheric distortion. Conventional adaptive optics takes a quasi-static approach to controlling the, deformable mirror. However, flexibility within the control bandwidth calls for a new approach to adaptive optics. Dynamic influence functions are used to characterize the influence of each actuator on the surface of the deformable mirror. A linearized model of atmospheric distortion is combined with dynamic influence functions to produce a dynamic reconstructor. This dynamic reconstructor is recognized as an optimal control problem. Solving the optimal control problem for a system with hundreds of actuators and sensors is formidable. Exploiting the circularly symmetric geometry of the mirror, and a suitable model of atmospheric distortion, the control problem is divided into a number of smaller decoupled control problems using circulant matrix theory. A hierarchic control scheme which seeks to emulate the quasi-static control approach that is generally used in adaptive optics is compared to the proposed dynamic reconstruction technique. Although dynamic reconstruction requires somewhat more computational power to implement, it achieves better performance with less power usage, and is less sensitive than the hierarchic technique.

  6. Characterization of the disruption of neural control strategies for dynamic fingertip forces from attractor reconstruction

    PubMed Central

    Valero-Cuevas, Francisco J.

    2017-01-01

    The Strength-Dexterity (SD) test measures the ability of the pulps of the thumb and index finger to compress a compliant and slender spring prone to buckling at low forces (<3N). We know that factors such as aging and neurodegenerative conditions bring deteriorating physiological changes (e.g., at the level of motor cortex, cerebellum, and basal ganglia), which lead to an overall loss of dexterous ability. However, little is known about how these changes reflect upon the dynamics of the underlying biological system. The spring-hand system exhibits nonlinear dynamical behavior and here we characterize the dynamical behavior of the phase portraits using attractor reconstruction. Thirty participants performed the SD test: 10 young adults, 10 older adults, and 10 older adults with Parkinson’s disease (PD). We used delayed embedding of the applied force to reconstruct its attractor. We characterized the distribution of points of the phase portraits by their density (number of distant points and interquartile range) and geometric features (trajectory length and size). We find phase portraits from older adults exhibit more distant points (p = 0.028) than young adults and participants with PD have larger interquartile ranges (p = 0.001), trajectory lengths (p = 0.005), and size (p = 0.003) than their healthy counterparts. The increased size of the phase portraits with healthy aging suggests a change in the dynamical properties of the system, which may represent a weakening of the neural control strategy. In contrast, the distortion of the attractor in PD suggests a fundamental change in the underlying biological system, and disruption of the neural control strategy. This ability to detect differences in the biological mechanisms of dexterity in healthy and pathological aging provides a simple means to assess their disruption in neurodegenerative conditions and justifies further studies to understand the link with the physiological changes. PMID:28192482

  7. Dynamic reconstruction and multivariable control for force-actuated, thin facesheet adaptive optics

    NASA Astrophysics Data System (ADS)

    Grocott, Simon C. O.

    1997-10-01

    The Multiple Mirror Telescope (MMT) under development at the University of Arizona takes a new approach in adaptive optics placing a large (0.65 m) force-actuated, thin facesheet deformable mirror at the secondary of an astronomical telescope, thus reducing the effects of emissivity which are important in IR astronomy. However, the large size of the mirror and low stiffness actuators used drive the natural frequencies of the mirror down into the bandwidth of the atmospheric distortion. Conventional adaptive optics takes a quasi-static approach to controlling the deformable mirror. However, flexibility within the control bandwidth calls for a new approach to adaptive optics. Dynamic influence functions are used to characterize the influence of each actuator on the surface of the deformable mirror. A linearized model of atmospheric distortion is combined with dynamic influence functions to produce a dynamic reconstructor. This dynamic reconstructor is recognized as an optimal control problem. Solving the optimal control problem for a system with hundreds of actuators and sensors is formidable. Exploiting the circularly symmetric geometry of the mirror, and a suitable model of atmospheric distortion, the control problem is divided into a number of smaller decoupled control problems using circulant matrix theory. A hierarchic control scheme which seeks to emulate the quasi-static control approach that is generally used in adaptive optics is compared to the proposed dynamic reconstruction technique. Although dynamic reconstruction requires somewhat more computational power to implement, it achieves better performance with less power usage, and is less sensitive than the hierarchic technique. (Copies available exclusively from MIT Libraries, Rm. 14-0551, Cambridge, MA 02139-4307. Ph. 617-253-5668; Fax 617-253- 1690).

  8. Free Energy Reconstruction from Logarithmic Mean-Force Dynamics Using Multiple Nonequilibrium Trajectories.

    PubMed

    Morishita, Tetsuya; Yonezawa, Yasushige; Ito, Atsushi M

    2017-07-11

    Efficient and reliable estimation of the mean force (MF), the derivatives of the free energy with respect to a set of collective variables (CVs), has been a challenging problem because free energy differences are often computed by integrating the MF. Among various methods for computing free energy differences, logarithmic mean-force dynamics (LogMFD) [ Morishita et al., Phys. Rev. E 2012 , 85 , 066702 ] invokes the conservation law in classical mechanics to integrate the MF, which allows us to estimate the free energy profile along the CVs on-the-fly. Here, we present a method called parallel dynamics, which improves the estimation of the MF by employing multiple replicas of the system and is straightforwardly incorporated in LogMFD or a related method. In the parallel dynamics, the MF is evaluated by a nonequilibrium path-ensemble using the multiple replicas based on the Crooks-Jarzynski nonequilibrium work relation. Thanks to the Crooks relation, realizing full-equilibrium states is no longer mandatory for estimating the MF. Additionally, sampling in the hidden subspace orthogonal to the CV space is highly improved with appropriate weights for each metastable state (if any), which is hardly achievable by typical free energy computational methods. We illustrate how to implement parallel dynamics by combining it with LogMFD, which we call logarithmic parallel dynamics (LogPD). Biosystems of alanine dipeptide and adenylate kinase in explicit water are employed as benchmark systems to which LogPD is applied to demonstrate the effect of multiple replicas on the accuracy and efficiency in estimating the free energy profiles using parallel dynamics.

  9. Reconstructing the distributed force on an atomic force microscope cantilever

    NASA Astrophysics Data System (ADS)

    Wagner, Ryan; Killgore, Jason

    2017-03-01

    A methodology is developed to reconstruct the force applied to an atomic force microscopy (AFM) cantilever given the shape in which it vibrates. This is accomplished by rewriting Bernoulli-Euler beam theory such that the force on the cantilever is approximated as a linear superposition of the theoretical cantilever eigenmodes. The weighting factors in this summation are calculated from the amplitude and phase measured along the length of the cantilever. The accuracy of the force reconstruction is shown to depend on the frequency at which the measurement is performed, the number of discrete points measured along the length of the cantilever, and the signal-to-noise ratio of the measured signal. In contrast to other AFM force reconstruction techniques, this method can reconstruct the distribution of force applied over the length of the AFM cantilever. However, this method performs poorly for localized forces applied to the cantilever, such as is typical of most tip-sample interaction forces. Proof of concept experiments are performed on an electrostatically excited cantilever and the expected force distribution is recovered. This force reconstruction technique offers previously unavailable insight into the distributed forces experienced by an AFM cantilever.

  10. Reconstructing the distributed force on an atomic force microscope cantilever.

    PubMed

    Wagner, Ryan; Killgore, Jason

    2017-03-10

    A methodology is developed to reconstruct the force applied to an atomic force microscopy (AFM) cantilever given the shape in which it vibrates. This is accomplished by rewriting Bernoulli-Euler beam theory such that the force on the cantilever is approximated as a linear superposition of the theoretical cantilever eigenmodes. The weighting factors in this summation are calculated from the amplitude and phase measured along the length of the cantilever. The accuracy of the force reconstruction is shown to depend on the frequency at which the measurement is performed, the number of discrete points measured along the length of the cantilever, and the signal-to-noise ratio of the measured signal. In contrast to other AFM force reconstruction techniques, this method can reconstruct the distribution of force applied over the length of the AFM cantilever. However, this method performs poorly for localized forces applied to the cantilever, such as is typical of most tip-sample interaction forces. Proof of concept experiments are performed on an electrostatically excited cantilever and the expected force distribution is recovered. This force reconstruction technique offers previously unavailable insight into the distributed forces experienced by an AFM cantilever.

  11. Reconstructing Volcanic Forcing of Climate: Past, Present and Future

    NASA Astrophysics Data System (ADS)

    Toohey, M.; Timmreck, C.; Sigl, M.

    2015-12-01

    Radiative forcing resulting from major volcanic eruptions has been a dominant driver of climate variability during Earth's history. Including volcanic forcing in climate model simulations is therefore essential to recreate past climate variability, and provides the opportunity to test the ability of models to respond accurately to external forcing. Ice cores provide estimates of the volcanic sulfate loadings from past eruptions, from which radiative forcing can be reconstructed, with associated uncertainties. Using prior reconstructions, climate models have reproduced the gross features of global mean temperature variability reconstructed from climate proxies, although some significant differences between model results and reconstructions remain. There is much less confidence in the accuracy of the dynamical responses to volcanic forcing produced by climate models, and thus the regional aspects of post-volcanic climate anomalies are much more uncertain—a result which mirrors uncertainties in the dynamical responses to future climate change. Improvements in model's response to volcanic forcing may be possible through improving the accuracy of the forcing data. Recent advances on multiple fronts have motivated the development of a next-generation volcanic forcing timeseries for use in climate models, based on (1) improved dating and precision of ice core records, (2) better understanding of the atmospheric transport and microphysical evolution of volcanic aerosol, including its size distribution, and (3) improved representations of the spatiotemporal structure of volcanic radiative forcing. A new volcanic forcing data set, covering the past 2500 years, will be introduced and compared with prior reconstructions. Preliminary results of climate model simulations using the new forcing will also be shown, and current and future applications of the forcing set discussed.

  12. Reconstruction of Rift Valley fever transmission dynamics in Madagascar: estimation of force of infection from seroprevalence surveys using Bayesian modelling

    PubMed Central

    Olive, Marie-Marie; Grosbois, Vladimir; Tran, Annelise; Nomenjanahary, Lalaina Arivony; Rakotoarinoro, Mihaja; Andriamandimby, Soa-Fy; Rogier, Christophe; Heraud, Jean-Michel; Chevalier, Veronique

    2017-01-01

    The force of infection (FOI) is one of the key parameters describing the dynamics of transmission of vector-borne diseases. Following the occurrence of two major outbreaks of Rift Valley fever (RVF) in Madagascar in 1990–91 and 2008–09, recent studies suggest that the pattern of RVF virus (RVFV) transmission differed among the four main eco-regions (East, Highlands, North-West and South-West). Using Bayesian hierarchical models fitted to serological data from cattle of known age collected during two surveys (2008 and 2014), we estimated RVF FOI and described its variations over time and space in Madagascar. We show that the patterns of RVFV transmission strongly differed among the eco-regions. In the North-West and Highlands regions, these patterns were synchronous with a high intensity in mid-2007/mid-2008. In the East and South-West, the peaks of transmission were later, between mid-2008 and mid-2010. In the warm and humid northwestern eco-region favorable to mosquito populations, RVFV is probably transmitted all year-long at low-level during inter-epizootic period allowing its maintenance and being regularly introduced in the Highlands through ruminant trade. The RVF surveillance of animals of the northwestern region could be used as an early warning indicator of an increased risk of RVF outbreak in Madagascar. PMID:28051125

  13. Reconstruction of Rift Valley fever transmission dynamics in Madagascar: estimation of force of infection from seroprevalence surveys using Bayesian modelling.

    PubMed

    Olive, Marie-Marie; Grosbois, Vladimir; Tran, Annelise; Nomenjanahary, Lalaina Arivony; Rakotoarinoro, Mihaja; Andriamandimby, Soa-Fy; Rogier, Christophe; Heraud, Jean-Michel; Chevalier, Veronique

    2017-01-04

    The force of infection (FOI) is one of the key parameters describing the dynamics of transmission of vector-borne diseases. Following the occurrence of two major outbreaks of Rift Valley fever (RVF) in Madagascar in 1990-91 and 2008-09, recent studies suggest that the pattern of RVF virus (RVFV) transmission differed among the four main eco-regions (East, Highlands, North-West and South-West). Using Bayesian hierarchical models fitted to serological data from cattle of known age collected during two surveys (2008 and 2014), we estimated RVF FOI and described its variations over time and space in Madagascar. We show that the patterns of RVFV transmission strongly differed among the eco-regions. In the North-West and Highlands regions, these patterns were synchronous with a high intensity in mid-2007/mid-2008. In the East and South-West, the peaks of transmission were later, between mid-2008 and mid-2010. In the warm and humid northwestern eco-region favorable to mosquito populations, RVFV is probably transmitted all year-long at low-level during inter-epizootic period allowing its maintenance and being regularly introduced in the Highlands through ruminant trade. The RVF surveillance of animals of the northwestern region could be used as an early warning indicator of an increased risk of RVF outbreak in Madagascar.

  14. A statistical-dynamical scheme for reconstructing ocean forcing in the Atlantic. Part I: weather regimes as predictors for ocean surface variables

    NASA Astrophysics Data System (ADS)

    Cassou, Christophe; Minvielle, Marie; Terray, Laurent; Périgaud, Claire

    2011-01-01

    findings are encouraging for the prospects of basin-scale ocean dynamical downscaling using a weather-typing approach to reconstruct forcing fields for high resolution ocean models (Part II) from coarse resolution climate models.

  15. Reconstructing Weighted Networks from Dynamics

    NASA Astrophysics Data System (ADS)

    Ching, Emily S. C.; Lai, P. Y.; Leung, C. Y.

    2015-03-01

    The knowledge of how the different nodes of a network interact or link with one another is crucial for the understanding of the collective behavior and the functionality of the network. We have recently developed a method that can reconstruct both the links and their relative coupling strength of bidirectional weighted networks. Our method requires only measurements of node dynamics as input and is based on a relation between the pseudo-inverse of the matrix of the correlation of the node dynamics and the Laplacian matrix of the weighted network. Using several examples of different dynamics, we demonstrate that our method can accurately reconstruct the connectivity as well as the weights of the links for weighted random and weighted scale-free networks with both linear and nonlinear dynamics. The work of ESCC and CYL has been supported by the Hong Kong Research Grants Council under Grant No. CUHK 14300914.

  16. Force reconstruction from tapping mode force microscopy experiments

    NASA Astrophysics Data System (ADS)

    Payam, Amir F.; Martin-Jimenez, Daniel; Garcia, Ricardo

    2015-05-01

    Fast, accurate, and robust nanomechanical measurements are intensely studied in materials science, applied physics, and molecular biology. Amplitude modulation force microscopy (tapping mode) is the most established nanoscale characterization technique of surfaces for air and liquid environments. However, its quantitative capabilities lag behind its high spatial resolution and robustness. We develop a general method to transform the observables into quantitative force measurements. The force reconstruction algorithm has been deduced on the assumption that the observables (amplitude and phase shift) are slowly varying functions of the tip-surface separation. The accuracy and applicability of the method is validated by numerical simulations and experiments. The method is valid for liquid and air environments, small and large free amplitudes, compliant and rigid materials, and conservative and non-conservative forces.

  17. A multiplicative regularization for force reconstruction

    NASA Astrophysics Data System (ADS)

    Aucejo, M.; De Smet, O.

    2017-02-01

    Additive regularizations, such as Tikhonov-like approaches, are certainly the most popular methods for reconstructing forces acting on a structure. These approaches require, however, the knowledge of a regularization parameter, that can be numerically computed using specific procedures. Unfortunately, these procedures are generally computationally intensive. For this particular reason, it could be of primary interest to propose a method able to proceed without defining any regularization parameter beforehand. In this paper, a multiplicative regularization is introduced for this purpose. By construction, the regularized solution has to be calculated in an iterative manner. In doing so, the amount of regularization is automatically adjusted throughout the resolution process. Validations using synthetic and experimental data highlight the ability of the proposed approach in providing consistent reconstructions.

  18. Force reconstruction using the inverse of the mode-shape matrix

    SciTech Connect

    Carne, T.G.; Bateman, V.I.; Dohrman, C.R.

    1991-01-01

    Force reconstruction is a process in which response signals from a dynamic event are used to infer what the applied force must have been to produce these responses. Force reconstruction is of interest when the input force cannot be directly measured, while the response signals are easily obtained using transducers such as accelerometers or strain gages. In many evaluation tests of a structure, the dynamic response is not sufficient information; one may really need a description of the input force. A new technique for force reconstruction is developed. To estimate the externally applied force, this technique sums the weight-scaled acceleration signals, and is referred to as the Sum of Weighted Accelerations Technique (SWAT). To obtain the scalar weights the inverse of the mode shape matrix is used. Application of this technique is illustrated with both numerical calculations using a mass-spring model and experimental data from a structure impacting a rigid barrier. 16 refs., 13 figs.

  19. The Dynamic Force Table

    ERIC Educational Resources Information Center

    Geddes, John B.; Black, Kelly

    2008-01-01

    We examine an experimental apparatus that is used to motivate the connections between the basic properties of vectors, potential functions, systems of nonlinear equations, and Newton's method for nonlinear systems of equations. The apparatus is an adaptation of a force table where we remove the center-pin and allow the center-ring to move freely.…

  20. The Dynamic Force Table

    ERIC Educational Resources Information Center

    Geddes, John B.; Black, Kelly

    2008-01-01

    We examine an experimental apparatus that is used to motivate the connections between the basic properties of vectors, potential functions, systems of nonlinear equations, and Newton's method for nonlinear systems of equations. The apparatus is an adaptation of a force table where we remove the center-pin and allow the center-ring to move freely.…

  1. Dynamic properties of force fields

    NASA Astrophysics Data System (ADS)

    Vitalini, F.; Mey, A. S. J. S.; Noé, F.; Keller, B. G.

    2015-02-01

    Molecular-dynamics simulations are increasingly used to study dynamic properties of biological systems. With this development, the ability of force fields to successfully predict relaxation timescales and the associated conformational exchange processes moves into focus. We assess to what extent the dynamic properties of model peptides (Ac-A-NHMe, Ac-V-NHMe, AVAVA, A10) differ when simulated with different force fields (AMBER ff99SB-ILDN, AMBER ff03, OPLS-AA/L, CHARMM27, and GROMOS43a1). The dynamic properties are extracted using Markov state models. For single-residue models (Ac-A-NHMe, Ac-V-NHMe), the slow conformational exchange processes are similar in all force fields, but the associated relaxation timescales differ by up to an order of magnitude. For the peptide systems, not only the relaxation timescales, but also the conformational exchange processes differ considerably across force fields. This finding calls the significance of dynamic interpretations of molecular-dynamics simulations into question.

  2. Reconstructing geomorphic patterns and forcing factors from Alpine Lake Sediment

    NASA Astrophysics Data System (ADS)

    Arnaud, Fabien; Poulenard, Jérôme; Giguet-Covex, Charline; Wilhelm, Bruno; Révillon, Sidonie; Jenny, Jean-Philippe; Revel, Marie; Enters, Dirk; Bajard, Manon; Fouinat, Laurent; Doyen, Elise; Simonneau, Anaëlle; Pignol, Cécile; Chapron, Emmanuel; Vannière, Boris; Sabatier, Pierre

    2017-04-01

    In this paper we review the scientific efforts that were led over the last decades to reconstruct geomorphic patterns from continuous alpine lake sediment records. Whereas our results point a growing importance of humans as erosion forcing factors, we will focus here on climate-related processes. Our main dataset is made of a regional approach which was led without any a priori regarding erosion forcing factors. We hence integrated a set of sediment sequences from various environment along an altitudinal gradient from 200 up to 2400m asl in Northern French Alps. Altogether our data point climate change as one of the main factor of erosion variability. In particular, the last two cold spells that occurred during the early middle age (Dark Age) and between the 14th and the 20th century AD (Little Ice Age) appear to be outstanding compared to any other periods of enhanced erosion along the Holocene. The climatic forcing of those erosion phases is supported by an increase in the contribution of glacier-eroded material at a regional scale. At local scales, our data also point the growing importance, since at least the mid Bronze Age (ca. 3500 cal. BP) of human activities as a major erosion factor. This influence peaked during the late Iron Age and Antiquity periods (200 BC - 400 AD) when we record a regional generalised period of enhanced erosion in response to the development of pasturing activities. Thanks to provenance and weathering markers, we evidenced a strong relationship between the changes in ecosystems, soil development and erosion patterns. We hence showed the vegetal colonisation of bared soil led to a period of intense weathering while new soils were under formation between 11,000 and 8,000 cal. BP. Soils then knew an optimum until the onset of the Neoglacial at ca. 4,500 cal. BP prior to decline under both climate and human pressures. Altogether our data point the complexity of processes that affected the Earth critical zone along the Holocene. However

  3. Reconstruction of piano hammer force from string velocity.

    PubMed

    Chaigne, Antoine

    2016-11-01

    A method is presented for reconstructing piano hammer forces through appropriate filtering of the measured string velocity. The filter design is based on the analysis of the pulses generated by the hammer blow and propagating along the string. In the five lowest octaves, the hammer force is reconstructed by considering two waves only: the incoming wave from the hammer and its first reflection at the front end. For the higher notes, four- or eight-wave schemes must be considered. The theory is validated on simulated string velocities by comparing imposed and reconstructed forces. The simulations are based on a nonlinear damped stiff string model previously developed by Chabassier, Chaigne, and Joly [J. Acoust. Soc. Am. 134(1), 648-665 (2013)]. The influence of absorption, dispersion, and amplitude of the string waves on the quality of the reconstruction is discussed. Finally, the method is applied to real piano strings. The measured string velocity is compared to the simulated velocity excited by the reconstructed force, showing a high degree of accuracy. A number of simulations are compared to simulated strings excited by a force derived from measurements of mass and acceleration of the hammer head. One application to an historic piano is also presented.

  4. Reconstruction of dynamic gated cardiac SPECT

    SciTech Connect

    Jin Mingwu; Yang Yongyi; King, Michael A.

    2006-11-15

    In this paper we propose an image reconstruction procedure which aims to unify gated single photon emission computed tomography (SPECT) and dynamic SPECT into a single method. We divide the cardiac cycle into a number of gate intervals as in gated SPECT, but treat the tracer distribution for each gate as a time-varying signal. By using both dynamic and motion-compensated temporal regularization, our reconstruction procedure will produce an image sequence that shows both cardiac motion and time-varying tracer distribution simultaneously. To demonstrate the proposed reconstruction method, we simulated gated cardiac perfusion imaging using the gated mathematical cardiac-torso (gMCAT) phantom with Tc99m-Teboroxime as the imaging agent. Our results show that the proposed method can produce more accurate reconstruction of gated dynamic images than independent reconstruction of individual gate frames with spatial smoothness alone. In particular, our results show that the former could improve the contrast to noise ratio of a simulated perfusion defect by as much as 100% when compared to the latter.

  5. Remote Dynamic Three-Dimensional Scene Reconstruction

    PubMed Central

    Yang, You; Liu, Qiong; Ji, Rongrong; Gao, Yue

    2013-01-01

    Remote dynamic three-dimensional (3D) scene reconstruction renders the motion structure of a 3D scene remotely by means of both the color video and the corresponding depth maps. It has shown a great potential for telepresence applications like remote monitoring and remote medical imaging. Under this circumstance, video-rate and high resolution are two crucial characteristics for building a good depth map, which however mutually contradict during the depth sensor capturing. Therefore, recent works prefer to only transmit the high-resolution color video to the terminal side, and subsequently the scene depth is reconstructed by estimating the motion vectors from the video, typically using the propagation based methods towards a video-rate depth reconstruction. However, in most of the remote transmission systems, only the compressed color video stream is available. As a result, color video restored from the streams has quality losses, and thus the extracted motion vectors are inaccurate for depth reconstruction. In this paper, we propose a precise and robust scheme for dynamic 3D scene reconstruction by using the compressed color video stream and their inaccurate motion vectors. Our method rectifies the inaccurate motion vectors by analyzing and compensating their quality losses, motion vector absence in spatial prediction, and dislocation in near-boundary region. This rectification ensures the depth maps can be compensated in both video-rate and high resolution at the terminal side towards reducing the system consumption on both the compression and transmission. Our experiments validate that the proposed scheme is robust for depth map and dynamic scene reconstruction on long propagation distance, even with high compression ratio, outperforming the benchmark approaches with at least 3.3950 dB quality gains for remote applications. PMID:23667417

  6. Surface potential modeling and reconstruction in Kelvin probe force microscopy.

    PubMed

    Xu, Jie; Wu, Yangqing; Li, Wei; Xu, Jun

    2017-09-08

    Kelvin probe force microscopy (KPFM) measurement has been extensively applied in metallic, semiconductor and organic electronic or photovoltaic devices, to characterize the local contact potential difference or surface potential of the samples at the nanoscale. Here, a comprehensive modeling of surface potential in KPFM is established, from the well-known single capacitance model to a precise electrodynamic model, considering the long range property of the electrostatic force in KPFM. The limitations and relations of different models are also discussed. Besides, the feedback condition of the KPFM system is reconsidered and modified, showing that the influence of the cantilever has been overestimated by about 20% in previous reports. Afterwards, the surface potential of charged Si-nanocrystals is reconstructed based on the electrodynamic model, and the calculated surface charge density is very consistent with the macroscopic capacitance-voltage (C-V) measurement. A deep understanding and correct reconstruction of surface potential is crucial to the quantitative analysis of KPFM results.

  7. Surface potential modeling and reconstruction in Kelvin probe force microscopy

    NASA Astrophysics Data System (ADS)

    Xu, Jie; Wu, Yangqing; Li, Wei; Xu, Jun

    2017-09-01

    Kelvin probe force microscopy (KPFM) measurement has been extensively applied in metallic, semiconductor and organic electronic or photovoltaic devices, to characterize the local contact potential difference or surface potential of the samples at the nanoscale. Here, a comprehensive modeling of surface potential in KPFM is established, from the well-known single capacitance model to a precise electrodynamic model, considering the long range property of the electrostatic force in KPFM. The limitations and relations of different models are also discussed. Besides, the feedback condition of the KPFM system is reconsidered and modified, showing that the influence of the cantilever has been overestimated by about 20% in previous reports. Afterwards, the surface potential of charged Si-nanocrystals is reconstructed based on the electrodynamic model, and the calculated surface charge density is very consistent with the macroscopic capacitance-voltage (C-V) measurement. A deep understanding and correct reconstruction of surface potential is crucial to the quantitative analysis of KPFM results.

  8. Image reconstruction with acoustic radiation force induced shear waves

    NASA Astrophysics Data System (ADS)

    McAleavey, Stephen A.; Nightingale, Kathryn R.; Stutz, Deborah L.; Hsu, Stephen J.; Trahey, Gregg E.

    2003-05-01

    Acoustic radiation force may be used to induce localized displacements within tissue. This phenomenon is used in Acoustic Radiation Force Impulse Imaging (ARFI), where short bursts of ultrasound deliver an impulsive force to a small region. The application of this transient force launches shear waves which propagate normally to the ultrasound beam axis. Measurements of the displacements induced by the propagating shear wave allow reconstruction of the local shear modulus, by wave tracking and inversion techniques. Here we present in vitro, ex vivo and in vivo measurements and images of shear modulus. Data were obtained with a single transducer, a conventional ultrasound scanner and specialized pulse sequences. Young's modulus values of 4 kPa, 13 kPa and 14 kPa were observed for fat, breast fibroadenoma, and skin. Shear modulus anisotropy in beef muscle was observed.

  9. Dynamic Force Measurement with Strain Gauges

    ERIC Educational Resources Information Center

    Lee, Bruce E.

    1974-01-01

    Discusses the use of four strain gauges, a Wheatstone bridge, and an oscilloscope to measure forces dynamically. Included is an example of determining the centripetal force of a pendulum in a general physics laboratory. (CC)

  10. Dynamic Force Measurement with Strain Gauges

    ERIC Educational Resources Information Center

    Lee, Bruce E.

    1974-01-01

    Discusses the use of four strain gauges, a Wheatstone bridge, and an oscilloscope to measure forces dynamically. Included is an example of determining the centripetal force of a pendulum in a general physics laboratory. (CC)

  11. Fusion of intraoperative force sensoring, surface reconstruction and biomechanical modeling

    NASA Astrophysics Data System (ADS)

    Röhl, S.; Bodenstedt, S.; Küderle, C.; Suwelack, S.; Kenngott, H.; Müller-Stich, B. P.; Dillmann, R.; Speidel, S.

    2012-02-01

    Minimally invasive surgery is medically complex and can heavily benefit from computer assistance. One way to help the surgeon is to integrate preoperative planning data into the surgical workflow. This information can be represented as a customized preoperative model of the surgical site. To use it intraoperatively, it has to be updated during the intervention due to the constantly changing environment. Hence, intraoperative sensor data has to be acquired and registered with the preoperative model. Haptic information which could complement the visual sensor data is still not established. In addition, biomechanical modeling of the surgical site can help in reflecting the changes which cannot be captured by intraoperative sensors. We present a setting where a force sensor is integrated into a laparoscopic instrument. In a test scenario using a silicone liver phantom, we register the measured forces with a reconstructed surface model from stereo endoscopic images and a finite element model. The endoscope, the instrument and the liver phantom are tracked with a Polaris optical tracking system. By fusing this information, we can transfer the deformation onto the finite element model. The purpose of this setting is to demonstrate the principles needed and the methods developed for intraoperative sensor data fusion. One emphasis lies on the calibration of the force sensor with the instrument and first experiments with soft tissue. We also present our solution and first results concerning the integration of the force sensor as well as accuracy to the fusion of force measurements, surface reconstruction and biomechanical modeling.

  12. Forces affecting orbital floor reconstruction materials--a cadaver study.

    PubMed

    Birkenfeld, Falk; Steiner, Martin; Kern, Matthias; Wiltfang, Jörg; Möller, Björn; Lucius, Ralph; Becker, Stephan Thomas

    2013-01-01

    The objectives of this study were: (i) to evaluate the applied force and the displacement of the orbital contents after orbital floor reconstruction using artificially aged reconstruction materials in fresh frozen human heads and (ii) to analyze the puncture strength of the materials. Six fresh frozen human heads were used, and orbital floor defects in the right and left orbit were created by 3.0 J direct impacts on the globe and infraorbital rim. The orbital floor defect sizes and displacements were evaluated after a Le-Fort-I osteotomy. The orbital floor defect sizes were 208.3(SD, 33.4) mm(2) for the globe impacts and 221.8(SD, 53.1) mm(2) for the infraorbital impacts. The forces on the incorporated materials were approximately 0.003 N and 0.03 N for the PDS-foil and collagen membrane, respectively. The displacements of the materials were +0.9 mm and +0.7 mm for the PDS-foil and collagen membrane, respectively. The puncture strengths of the PDS-foil and collagen membrane decreased from approximately 70 N and 12 N at week 1 to approximately 5 N and 1.5 N at week 8 of artificial aging. The force applied to the orbital content is minimal, and the puncture strengths of the artificially aged materials are more than sufficient for the measured forces. Copyright © 2012 European Association for Cranio-Maxillo-Facial Surgery. Published by Elsevier Ltd. All rights reserved.

  13. Dynamic state allocation for MEG source reconstruction.

    PubMed

    Woolrich, Mark W; Baker, Adam; Luckhoo, Henry; Mohseni, Hamid; Barnes, Gareth; Brookes, Matthew; Rezek, Iead

    2013-08-15

    Our understanding of the dynamics of neuronal activity in the human brain remains limited, due in part to a lack of adequate methods for reconstructing neuronal activity from noninvasive electrophysiological data. Here, we present a novel adaptive time-varying approach to source reconstruction that can be applied to magnetoencephalography (MEG) and electroencephalography (EEG) data. The method is underpinned by a Hidden Markov Model (HMM), which infers the points in time when particular states re-occur in the sensor space data. HMM inference finds short-lived states on the scale of 100ms. Intriguingly, this is on the same timescale as EEG microstates. The resulting state time courses can be used to intelligently pool data over these distinct and short-lived periods in time. This is used to compute time-varying data covariance matrices for use in beamforming, resulting in a source reconstruction approach that can tune its spatial filtering properties to those required at different points in time. Proof of principle is demonstrated with simulated data, and we demonstrate improvements when the method is applied to MEG.

  14. Supersonic Flight Dynamics Test: Trajectory, Atmosphere, and Aerodynamics Reconstruction

    NASA Technical Reports Server (NTRS)

    Kutty, Prasad; Karlgaard, Christopher D.; Blood, Eric M.; O'Farrell, Clara; Ginn, Jason M.; Shoenenberger, Mark; Dutta, Soumyo

    2015-01-01

    The Supersonic Flight Dynamics Test is a full-scale flight test of a Supersonic Inflatable Aerodynamic Decelerator, which is part of the Low Density Supersonic Decelerator technology development project. The purpose of the project is to develop and mature aerodynamic decelerator technologies for landing large mass payloads on the surface of Mars. The technologies include a Supersonic Inflatable Aerodynamic Decelerator and Supersonic Parachutes. The first Supersonic Flight Dynamics Test occurred on June 28th, 2014 at the Pacific Missile Range Facility. This test was used to validate the test architecture for future missions. The flight was a success and, in addition, was able to acquire data on the aerodynamic performance of the supersonic inflatable decelerator. This paper describes the instrumentation, analysis techniques, and acquired flight test data utilized to reconstruct the vehicle trajectory, atmosphere, and aerodynamics. The results of the reconstruction show significantly higher lofting of the trajectory, which can partially be explained by off-nominal booster motor performance. The reconstructed vehicle force and moment coefficients fall well within pre-flight predictions. A parameter identification analysis indicates that the vehicle displayed greater aerodynamic static stability than seen in pre-flight computational predictions and ballistic range tests.

  15. Patellofemoral Pressure Changes After Static and Dynamic Medial Patellofemoral Ligament Reconstructions.

    PubMed

    Rood, Akkie; Hannink, Gerjon; Lenting, Anke; Groenen, Karlijn; Koëter, Sander; Verdonschot, Nico; van Kampen, Albert

    2015-10-01

    Reconstructing the medial patellofemoral ligament (MPFL) has become a key procedure for stabilizing the patella. Different techniques to reconstruct the MPFL have been described: static techniques in which the graft is fixed rigidly to the bone or dynamic techniques with soft tissue fixation. Static MPFL reconstruction is most commonly used. However, dynamic reconstruction deforms more easily and presumably functions more like the native MPFL. The aim of the study was to evaluate the effect of the different MPFL fixation techniques on patellofemoral pressures compared with the native situation. The hypothesis was that dynamic reconstruction would result in patellofemoral pressures closer to those generated in an intact knee. Controlled laboratory study. Seven fresh-frozen knee specimens were tested in an in vitro knee joint loading apparatus. Tekscan pressure-sensitive films fixed to the retropatellar cartilage measured mean patellofemoral and peak pressures, contact area, and location of the center of force (COF) at fixed flexion angles from 0° to 110°. Four different conditions were tested: intact, dynamic, partial dynamic, and static MPFL reconstruction. Data were analyzed using linear mixed models. Static MPFL reconstruction resulted in higher peak and mean pressures from 60° to 110° of flexion (P < .001). There were no differences in pressure between the 2 different dynamic reconstructions and the intact situation (P > .05). The COF in the static reconstruction group moved more medially on the patella from 50° to 110° of flexion compared with the other conditions. The contact area showed no significant differences between the test conditions. After static MPFL reconstruction, the patellofemoral pressures in flexion angles from 60° to 110° were 3 to 5 times higher than those in the intact situation. The pressures after dynamic MPFL reconstruction were similar as compared with those in the intact situation, and therefore, dynamic MPFL reconstruction

  16. Subpiconewton dynamic force spectroscopy using magnetic tweezers.

    PubMed

    Kruithof, M; Chien, F; de Jager, M; van Noort, J

    2008-03-15

    We introduce a simple method for dynamic force spectroscopy with magnetic tweezers. This method allows application of subpiconewton force and twist control by calibration of the applied force from the height of the magnets. Initial dynamic force spectroscopy experiments on DNA molecules revealed a large hysteresis that is caused by viscous drag on the magnetic bead and will conceal weak interactions. When smaller beads are used, this hysteresis is sufficiently reduced to reveal intramolecular interactions at subpiconewton forces. Compared with typical quasistatic force spectroscopy, a significant reduction of measurement time is achieved, allowing the real-time study of transient structures and reaction intermediates. As a proof of principle, nucleosome-nucleosome interactions on a subsaturated chromatin fiber were analyzed.

  17. Analyzing piezoresponse force microscopy for reconstruction of probed ferroelectric structures

    NASA Astrophysics Data System (ADS)

    Pan, K.; Liu, Y. Y.; Liu, Y. M.; Li, J. Y.

    2012-09-01

    Piezoresponse force microscopy (PFM) has emerged as the tool of choice for characterizing piezoelectric and ferroelectric materials at nanoscale, yet the interpretation of PFM remains to be difficult and sometimes ambiguous. Built on earlier works, we developed a numerical integration scheme to analyze the expected PFM response in ferroelectrics with arbitrary domain configurations, with the ultimate goal to accurately reconstruct the underlying ferroelectric structure from PFM measurements. Using such technique, we demonstrated that the relationship between the effective and intrinsic piezoelectric coefficients is sensitive to a variety of factors that are intrinsic to the probed materials, and showed that the PFM mapping is not only influenced by polarization distribution on the sample surface but also three-dimensional polarization distribution inside the material. While relatively simple domain structures were used for demonstration, the approach is general, and can be applied to ferroelectrics with arbitrary polarization distributions.

  18. Reconstructing Mammalian Sleep Dynamics with Data Assimilation

    PubMed Central

    Sedigh-Sarvestani, Madineh; Schiff, Steven J.; Gluckman, Bruce J.

    2012-01-01

    Data assimilation is a valuable tool in the study of any complex system, where measurements are incomplete, uncertain, or both. It enables the user to take advantage of all available information including experimental measurements and short-term model forecasts of a system. Although data assimilation has been used to study other biological systems, the study of the sleep-wake regulatory network has yet to benefit from this toolset. We present a data assimilation framework based on the unscented Kalman filter (UKF) for combining sparse measurements together with a relatively high-dimensional nonlinear computational model to estimate the state of a model of the sleep-wake regulatory system. We demonstrate with simulation studies that a few noisy variables can be used to accurately reconstruct the remaining hidden variables. We introduce a metric for ranking relative partial observability of computational models, within the UKF framework, that allows us to choose the optimal variables for measurement and also provides a methodology for optimizing framework parameters such as UKF covariance inflation. In addition, we demonstrate a parameter estimation method that allows us to track non-stationary model parameters and accommodate slow dynamics not included in the UKF filter model. Finally, we show that we can even use observed discretized sleep-state, which is not one of the model variables, to reconstruct model state and estimate unknown parameters. Sleep is implicated in many neurological disorders from epilepsy to schizophrenia, but simultaneous observation of the many brain components that regulate this behavior is difficult. We anticipate that this data assimilation framework will enable better understanding of the detailed interactions governing sleep and wake behavior and provide for better, more targeted, therapies. PMID:23209396

  19. Reconstructing mammalian sleep dynamics with data assimilation.

    PubMed

    Sedigh-Sarvestani, Madineh; Schiff, Steven J; Gluckman, Bruce J

    2012-01-01

    Data assimilation is a valuable tool in the study of any complex system, where measurements are incomplete, uncertain, or both. It enables the user to take advantage of all available information including experimental measurements and short-term model forecasts of a system. Although data assimilation has been used to study other biological systems, the study of the sleep-wake regulatory network has yet to benefit from this toolset. We present a data assimilation framework based on the unscented Kalman filter (UKF) for combining sparse measurements together with a relatively high-dimensional nonlinear computational model to estimate the state of a model of the sleep-wake regulatory system. We demonstrate with simulation studies that a few noisy variables can be used to accurately reconstruct the remaining hidden variables. We introduce a metric for ranking relative partial observability of computational models, within the UKF framework, that allows us to choose the optimal variables for measurement and also provides a methodology for optimizing framework parameters such as UKF covariance inflation. In addition, we demonstrate a parameter estimation method that allows us to track non-stationary model parameters and accommodate slow dynamics not included in the UKF filter model. Finally, we show that we can even use observed discretized sleep-state, which is not one of the model variables, to reconstruct model state and estimate unknown parameters. Sleep is implicated in many neurological disorders from epilepsy to schizophrenia, but simultaneous observation of the many brain components that regulate this behavior is difficult. We anticipate that this data assimilation framework will enable better understanding of the detailed interactions governing sleep and wake behavior and provide for better, more targeted, therapies.

  20. Undulator with dynamic compensation of magnetic forces

    DOEpatents

    Gluskin, Efim; Trakhtenberg, Emil; Xu, Joseph Z.

    2016-05-31

    A method and apparatus for implementing dynamic compensation of magnetic forces for undulators are provided. An undulator includes a respective set of magnet arrays, each attached to a strongback, and placed on horizontal slides and positioned parallel relative to each other with a predetermined gap. Magnetic forces are compensated by a set of compensation springs placed along the strongback. The compensation springs are conical springs having exponential-force characteristics that substantially match undulator magnetic forces independently of the predetermined gap. The conical springs are positioned along the length of the magnets.

  1. Asymptotic approximation method of force reconstruction: Proof of concept

    NASA Astrophysics Data System (ADS)

    Sanchez, J.; Benaroya, H.

    2017-08-01

    An important problem in engineering is the determination of the system input based on the system response. This type of problem is difficult to solve as it is often ill-defined, and produces inaccurate or non-unique results. Current reconstruction techniques typically involve the employment of optimization methods or additional constraints to regularize the problem, but these methods are not without their flaws as they may be sub-optimally applied and produce inadequate results. An alternative approach is developed that draws upon concepts from control systems theory, the equilibrium analysis of linear dynamical systems with time-dependent inputs, and asymptotic approximation analysis. This paper presents the theoretical development of the proposed method. A simple application of the method is presented to demonstrate the procedure. A more complex application to a continuous system is performed to demonstrate the applicability of the method.

  2. Force measurement enabling precise analysis by dynamic force spectroscopy.

    PubMed

    Taninaka, Atsushi; Hirano, Yuuichi; Takeuchi, Osamu; Shigekawa, Hidemi

    2012-01-01

    Dynamic force spectroscopy (DFS) makes it possible to investigate specific interactions between two molecules such as ligand-receptor pairs at the single-molecule level. In the DFS method based on the Bell-Evans model, the unbinding force applied to a molecular bond is increased at a constant rate, and the force required to rupture the molecular bond is measured. By analyzing the relationship between the modal rupture force and the logarithm of the loading rate, microscopic potential barrier landscapes and the lifetimes of bonds can be obtained. However, the results obtained, for example, in the case of streptavidin/biotin complexes, have differed among previous studies and some results have been inconsistent with theoretical predictions. In this study, using an atomic force microscopy technique that enables the precise analysis of molecular interactions on the basis of DFS, we investigated the effect of the sampling rate on DFS analysis. The shape of rupture force histograms, for example, was significantly deformed at a sampling rate of 1 kHz in comparison with that of histograms obtained at 100 kHz, indicating the fundamental importance of ensuring suitable experimental conditions for further advances in the DFS method.

  3. Vegetation dynamics amplifies precessional forcing

    NASA Astrophysics Data System (ADS)

    Claussen, Martin; Fohlmeister, Jens; Ganopolski, Andrey; Brovkin, Victor

    2006-05-01

    The astronomical theory of climate variations predicts that the climatic precession which changes the seasonal distance between Earth and Sun does not affect the annual mean irradiation at any given latitude. However, previous modeling studies suggest that during interglacials, the interaction between atmosphere, vegetation and ocean can transform the seasonal forcing by precession into an annual mean global signal. Here, we show that this result can be generalized. A distinct precessional signal emerges in a climate system model over many precessional cycles. While neither the atmosphere-ocean nor the atmosphere-vegetation model are able to produce a large amplitude of global temperature in the precessional band, only the mutual amplification of biogeophysical feedback and sea ice- albedo feedback allows a strong amplification of the precessional signal.

  4. Force dynamics in fixed-ratio schedules.

    PubMed

    Pinkston, Jonathan W; McBee, Lindsey N

    2014-03-01

    Fixed-ratio schedules are widely used in behavioral research. Although fixed-ratio schedules often conjure up relationships to work and effort, little is known about effort-related measures in these schedules. Early research had shown that force and effort of operant behavior vary systematically during the execution of ratio schedules, and the goal of the present study was to revisit early research on force dynamics in fixed-ratio schedules. Four rats earned sucrose by pressing an isometric force transducer. Presses produced sucrose after ten or twenty responses. In general, the force of responses increased then decreased systematically across the ratio. The possibility that decreases in force during ratio execution was due to a trade-off with the differential reinforcement of short inter-response times (IRT) was investigated in an additional condition where sucrose was made available according to a tandem fixed-ratio 19 inter-response (IRT)> t schedule. The tandem IRT requirement did not eliminate decreasing trends in force across the ratio; unexpectedly, the tandem requirement did eliminate increases in force early in the ratio, which may reflect sequence-level organization operating in the control of force dynamics.

  5. Sparse deconvolution for the large-scale ill-posed inverse problem of impact force reconstruction

    NASA Astrophysics Data System (ADS)

    Qiao, Baijie; Zhang, Xingwu; Gao, Jiawei; Liu, Ruonan; Chen, Xuefeng

    2017-01-01

    Most previous regularization methods for solving the inverse problem of force reconstruction are to minimize the l2-norm of the desired force. However, these traditional regularization methods such as Tikhonov regularization and truncated singular value decomposition, commonly fail to solve the large-scale ill-posed inverse problem in moderate computational cost. In this paper, taking into account the sparse characteristic of impact force, the idea of sparse deconvolution is first introduced to the field of impact force reconstruction and a general sparse deconvolution model of impact force is constructed. Second, a novel impact force reconstruction method based on the primal-dual interior point method (PDIPM) is proposed to solve such a large-scale sparse deconvolution model, where minimizing the l2-norm is replaced by minimizing the l1-norm. Meanwhile, the preconditioned conjugate gradient algorithm is used to compute the search direction of PDIPM with high computational efficiency. Finally, two experiments including the small-scale or medium-scale single impact force reconstruction and the relatively large-scale consecutive impact force reconstruction are conducted on a composite wind turbine blade and a shell structure to illustrate the advantage of PDIPM. Compared with Tikhonov regularization, PDIPM is more efficient, accurate and robust whether in the single impact force reconstruction or in the consecutive impact force reconstruction.

  6. Tensor-based Dictionary Learning for Dynamic Tomographic Reconstruction

    PubMed Central

    Tan, Shengqi; Zhang, Yanbo; Wang, Ge; Mou, Xuanqin; Cao, Guohua; Wu, Zhifang; Yu, Hengyong

    2015-01-01

    In dynamic computed tomography (CT) reconstruction, the data acquisition speed limits the spatio-temporal resolution. Recently, compressed sensing theory has been instrumental in improving CT reconstruction from far few-view projections. In this paper, we present an adaptive method to train a tensor-based spatio-temporal dictionary for sparse representation of an image sequence during the reconstruction process. The correlations among atoms and across phases are considered to capture the characteristics of an object. The reconstruction problem is solved by the alternating direction method of multipliers. To recover fine or sharp structures such as edges, the nonlocal total variation is incorporated into the algorithmic framework. Preclinical examples including a sheep lung perfusion study and a dynamic mouse cardiac imaging demonstrate that the proposed approach outperforms the vectorized dictionary-based CT reconstruction in the case of few-view reconstruction. PMID:25779991

  7. Tensor-based dictionary learning for dynamic tomographic reconstruction

    NASA Astrophysics Data System (ADS)

    Tan, Shengqi; Zhang, Yanbo; Wang, Ge; Mou, Xuanqin; Cao, Guohua; Wu, Zhifang; Yu, Hengyong

    2015-04-01

    In dynamic computed tomography (CT) reconstruction, the data acquisition speed limits the spatio-temporal resolution. Recently, compressed sensing theory has been instrumental in improving CT reconstruction from far few-view projections. In this paper, we present an adaptive method to train a tensor-based spatio-temporal dictionary for sparse representation of an image sequence during the reconstruction process. The correlations among atoms and across phases are considered to capture the characteristics of an object. The reconstruction problem is solved by the alternating direction method of multipliers. To recover fine or sharp structures such as edges, the nonlocal total variation is incorporated into the algorithmic framework. Preclinical examples including a sheep lung perfusion study and a dynamic mouse cardiac imaging demonstrate that the proposed approach outperforms the vectorized dictionary-based CT reconstruction in the case of few-view reconstruction.

  8. Research on new dynamic force calibration system

    NASA Astrophysics Data System (ADS)

    Zhang, Li

    2008-06-01

    Sinusoidal force calibration method based on electrodynamic shaker and interferometric system was studied several years before at Physikalisch-Technische Bundesanstalt (PTB). In that system a load mass are screwed on the top of force transducer, the sinusoidal forces realized by accelerated load masses are traceable to acceleration and mass according to the force definition F(t) = ma(t), where m is the total mass acting on the sensing element of the force transducer and a is the time and spatial-dependent acceleration of the mass, which is directly measured by a laser interferometer. This paper will introduce a new dynamic force calibration system developed at Changcheng Institute of Metrology and Measurement (CIMM). It uses electrodynamic shakers to generate dynamic force in the range from 1N to 20kN, and heterodyne laser interferometers are used for acceleration measurement. A new air bearing system is developed to increase the performance of shakers and an active vibration isolator is used to reduce enviromental disturbance to the interferometric system.

  9. Measurement of dynamic bite force during mastication.

    PubMed

    Shimada, A; Yamabe, Y; Torisu, T; Baad-Hansen, L; Murata, H; Svensson, P

    2012-05-01

    Efficient mastication of different types and size of food depends on fast integration of sensory information from mechanoreceptors and central control mechanisms of jaw movements and applied bite force. The neural basis underlying mastication has been studied for decades but little progress in understanding the dynamics of bite force has been made mainly due to technical limitations of bite force recorders. The aims of this study were to develop a new intraoral bite force recorder which would allow the study of natural mastication without an increase in the occlusal vertical dimension and subsequently to analyze the relation between electromyographic (EMG) activity of jaw-closing muscles, jaw movements and bite force during mastication of five different types of food. Customized force recorders based on strain gauge sensors were fitted to the upper and lower molar teeth on the preferred chewing side in fourteen healthy and dentate subjects (21-39 years), and recordings were carried out during voluntary mastication of five different kinds of food. Intraoral force recordings were successively obtained from all subjects. anova showed that impulse of bite force as well as integrated EMG was significantly influenced by food (P<0·05), while time-related parameters were significantly affected by chewing cycles (P<0·001). This study demonstrates that intraoral force recordings are feasible and can provide new information on the dynamics of human mastication with direct implications for oral rehabilitation. We also propose that the control of bite force during mastication is achieved by anticipatory adjustment and encoding of bolus characteristics.

  10. Forced synchronization of autonomous dynamical Boolean networks.

    PubMed

    Rivera-Durón, R R; Campos-Cantón, E; Campos-Cantón, I; Gauthier, Daniel J

    2015-08-01

    We present the design of an autonomous time-delay Boolean network realized with readily available electronic components. Through simulations and experiments that account for the detailed nonlinear response of each circuit element, we demonstrate that a network with five Boolean nodes displays complex behavior. Furthermore, we show that the dynamics of two identical networks display near-instantaneous synchronization to a periodic state when forced by a common periodic Boolean signal. A theoretical analysis of the network reveals the conditions under which complex behavior is expected in an individual network and the occurrence of synchronization in the forced networks. This research will enable future experiments on autonomous time-delay networks using readily available electronic components with dynamics on a slow enough time-scale so that inexpensive data collection systems can faithfully record the dynamics.

  11. Forced synchronization of autonomous dynamical Boolean networks

    SciTech Connect

    Rivera-Durón, R. R. Campos-Cantón, E.; Campos-Cantón, I.; Gauthier, Daniel J.

    2015-08-15

    We present the design of an autonomous time-delay Boolean network realized with readily available electronic components. Through simulations and experiments that account for the detailed nonlinear response of each circuit element, we demonstrate that a network with five Boolean nodes displays complex behavior. Furthermore, we show that the dynamics of two identical networks display near-instantaneous synchronization to a periodic state when forced by a common periodic Boolean signal. A theoretical analysis of the network reveals the conditions under which complex behavior is expected in an individual network and the occurrence of synchronization in the forced networks. This research will enable future experiments on autonomous time-delay networks using readily available electronic components with dynamics on a slow enough time-scale so that inexpensive data collection systems can faithfully record the dynamics.

  12. Forced synchronization of autonomous dynamical Boolean networks

    NASA Astrophysics Data System (ADS)

    Rivera-Durón, R. R.; Campos-Cantón, E.; Campos-Cantón, I.; Gauthier, Daniel J.

    2015-08-01

    We present the design of an autonomous time-delay Boolean network realized with readily available electronic components. Through simulations and experiments that account for the detailed nonlinear response of each circuit element, we demonstrate that a network with five Boolean nodes displays complex behavior. Furthermore, we show that the dynamics of two identical networks display near-instantaneous synchronization to a periodic state when forced by a common periodic Boolean signal. A theoretical analysis of the network reveals the conditions under which complex behavior is expected in an individual network and the occurrence of synchronization in the forced networks. This research will enable future experiments on autonomous time-delay networks using readily available electronic components with dynamics on a slow enough time-scale so that inexpensive data collection systems can faithfully record the dynamics.

  13. Identification of dynamic forces using group-sparsity in frequency domain

    NASA Astrophysics Data System (ADS)

    Rezayat, A.; Nassiri, V.; De Pauw, B.; Ertveldt, J.; Vanlanduit, S.; Guillaume, P.

    2016-03-01

    The knowledge of acting dynamic forces is required for the design of structures. Given the structural model, inverse techniques offer the possibility to reconstruct the system's input forces from vibration data. The inverse problem is highly sensitive to measurement noise, and the classical pseudo-inverse method generally fails to find the correct loads. In this paper we propose a new penalty function that combines the advantages of the ℓp-norm properties, together with a modified iterative optimization technique. The new algorithm (G-FISTA) is used to localize and reconstruct dynamic point-forces on a beam structure, with no prior knowledge on the force locations. The algorithm is validated by means of several simulations and experiments. The strain data is measured using Fiber Bragg Gratings (FBG) attached to the beam. The obtained results show that the location and time history of point forces are better estimated using the proposed technique.

  14. The role of nonlinear dynamics in quantitative atomic force microscopy.

    PubMed

    Platz, Daniel; Forchheimer, Daniel; Tholén, Erik A; Haviland, David B

    2012-07-05

    Various methods of force measurement with the atomic force microscope are compared for their ability to accurately determine the tip-surface force from analysis of the nonlinear cantilever motion. It is explained how intermodulation, or the frequency mixing of multiple drive tones by the nonlinear tip-surface force, can be used to concentrate the nonlinear motion in a narrow band of frequency near the cantilever's fundamental resonance, where accuracy and sensitivity of force measurement are greatest. Two different methods for reconstructing tip-surface forces from intermodulation spectra are explained. The reconstruction of both conservative and dissipative tip-surface interactions from intermodulation spectra are demonstrated on simulated data.

  15. Theory for nonlinear dynamic force spectroscopy.

    PubMed

    Björnham, Oscar; Andersson, Magnus

    2017-04-01

    Dynamic force spectroscopy (DFS) is an experimental technique that is commonly used to assess information on the strength, energy landscape, and lifetime of noncovalent bio-molecular interactions. DFS traditionally requires an applied force that increases linearly with time so that the bio-complex under investigation is exposed to a constant loading rate. However, tethers or polymers can modulate the applied force in a nonlinear manner. For example, bacterial adhesion pili and polymers with worm-like chain properties are structures that show nonlinear force responses. In these situations, the theory for traditional DFS cannot be readily applied. In this work, we expand the theory for DFS to also include nonlinear external forces while still maintaining compatibility with the linear DFS theory. To validate the theory, we modeled a bio-complex expressed on a stiff, an elastic, and a worm-like chain polymer, using Monte Carlo methods, and assessed the corresponding rupture force spectra. It was found that the nonlinear DFS (NLDFS) theory correctly predicted the numerical results. We also present a protocol suggesting an experimental approach and analysis method of the data to estimate the bond length and the thermal off-rate.

  16. Adaptive control of force microscope cantilever dynamics

    NASA Astrophysics Data System (ADS)

    Jensen, S. E.; Dougherty, W. M.; Garbini, J. L.; Sidles, J. A.

    2007-09-01

    Magnetic resonance force microscopy (MRFM) and other emerging scanning probe microscopies entail the detection of attonewton-scale forces. Requisite force sensitivities are achieved through the use of soft force microscope cantilevers as high resonant-Q micromechanical oscillators. In practice, the dynamics of these oscillators are greatly improved by the application of force feedback control computed in real time by a digital signal processor (DSP). Improvements include increased sensitive bandwidth, reduced oscillator ring up/down time, and reduced cantilever thermal vibration amplitude. However, when the cantilever tip and the sample are in close proximity, electrostatic and Casimir tip-sample force gradients can significantly alter the cantilever resonance frequency, foiling fixed-gain narrow-band control schemes. We report an improved, adaptive control algorithm that uses a Hilbert transform technique to continuously measure the vibration frequency of the thermally-excited cantilever and seamlessly adjust the DSP program coefficients. The closed-loop vibration amplitude is typically 0.05 nm. This adaptive algorithm enables narrow-band formally-optimal control over a wide range of resonance frequencies, and preserves the thermally-limited signal to noise ratio (SNR).

  17. Reconstructing the competitive dynamics of mixed-oak neighborhoods

    Treesearch

    Eric K. Zenner; Daniel J. Heggenstaller; Patrick H. Brose; JeriLynn E. Peck; Kim C. Steiner

    2012-01-01

    The disparity between the potential for latent oak dominance within a stand and their region-wide decline in importance value raises questions about the competitiveness of oaks in early stand dynamics. We reconstructed tree height growth dynamics in mixed-species neighborhoods to determine if currently dominant oaks were ever shorter than their competitors and at what...

  18. Anterior cruciate ligament reconstruction and cartilage contact forces – a 3D computational simulation

    PubMed Central

    Wang, Lianxin; Lin, Lin; Feng, Yong; Fernandes, Tiago Lazzaretti; Asnis, Peter; Hosseini, Ali; Li, Guoan

    2015-01-01

    Background Clinical outcome studies showed a high incidence of knee osteoarthritis after anterior cruciate ligament reconstruction. Abnormal joint kinematics and loading conditions were assumed as risking factors. However, little is known on cartilage contact forces after the surgery. Methods A validated computational model was used to simulate anatomic and transtibial single-bundle anterior cruciate ligament reconstructions. Two graft fixation angles (0° and 30°) were simulated for each reconstruction. Biomechanics of the knee was investigated in intact, anterior cruciate ligament deficient and reconstructed conditions when the knee was subjected to 134N anterior load and 400N quadriceps load at 0°, 30°, 60° and 90° of flexion. The tibial translation and rotation, graft forces, medial and lateral contact forces were calculated. Findings When the graft was fixed at 0°, the anatomic reconstruction resulted in slightly larger lateral contact force at 0° compared to the intact knee while the transtibial technique led to higher contact force at both 0° and 30° under the muscle load. When graft was fixed at 30°, the anatomic reconstruction overstrained the knee at 0° with larger contact forces, while the transtibial technique resulted in slightly larger contact forces at 30°. Interpretation This study suggests that neither the anatomic nor the transtibial reconstruction can consistently restore normal knee biomechanics at different flexion angles. The anatomic reconstruction may better restore anteroposterior stability and contact force with the graft fixed at 0°. The transtibial technique may better restore knee anteroposterior stability and articular contact force with the graft fixed at 30° of flexion. PMID:26320976

  19. Anterior cruciate ligament reconstruction and cartilage contact forces--A 3D computational simulation.

    PubMed

    Wang, Lianxin; Lin, Lin; Feng, Yong; Fernandes, Tiago Lazzaretti; Asnis, Peter; Hosseini, Ali; Li, Guoan

    2015-12-01

    Clinical outcome studies showed a high incidence of knee osteoarthritis after anterior cruciate ligament reconstruction. Abnormal joint kinematics and loading conditions were assumed as risking factors. However, little is known on cartilage contact forces after the surgery. A validated computational model was used to simulate anatomic and transtibial single-bundle anterior cruciate ligament reconstructions. Two graft fixation angles (0° and 30°) were simulated for each reconstruction. Biomechanics of the knee was investigated in intact, anterior cruciate ligament deficient and reconstructed conditions when the knee was subjected to 134 N anterior load and 400 N quadriceps load at 0°, 30°, 60° and 90° of flexion. The tibial translation and rotation, graft forces, medial and lateral contact forces were calculated. When the graft was fixed at 0°, the anatomic reconstruction resulted in slightly larger lateral contact force at 0° compared to the intact knee while the transtibial technique led to higher contact force at both 0° and 30° under the muscle load. When graft was fixed at 30°, the anatomic reconstruction overstrained the knee at 0° with larger contact forces, while the transtibial technique resulted in slightly larger contact forces at 30°. This study suggests that neither the anatomic nor the transtibial reconstruction can consistently restore normal knee biomechanics at different flexion angles. The anatomic reconstruction may better restore anteroposterior stability and contact force with the graft fixed at 0°. The transtibial technique may better restore knee anteroposterior stability and articular contact force with the graft fixed at 30° of flexion. Copyright © 2015 Elsevier Ltd. All rights reserved.

  20. Dynamic reconstruction of heterogeneous materials and microstructure evolution.

    PubMed

    Chen, Shaohua; Li, Hechao; Jiao, Yang

    2015-08-01

    Reconstructing heterogeneous materials from limited structural information has been a topic that attracts extensive research efforts and still poses many challenges. The Yeong-Torquato procedure is one of the most popular reconstruction techniques, in which the material reconstruction problem based on a set of spatial correlation functions is formulated as a constrained energy minimization (optimization) problem and solved using simulated annealing [Yeong and Torquato, Phys. Rev. E 57, 495 (1998)]. The standard two-point correlation function S2 has been widely used in reconstructions, but can also lead to large structural degeneracy for certain nearly percolating systems. To improve reconstruction accuracy and reduce structural degeneracy, one can successively incorporate additional morphological information (e.g., nonconventional or higher-order correlation functions), which amounts to reshaping the energy landscape to create a deep (local) energy minimum. In this paper, we present a dynamic reconstruction procedure that allows one to use a series of auxiliary S2 to achieve the same level of accuracy as those incorporating additional nonconventional correlation functions. In particular, instead of randomly sampling the microstructure space as in the simulated annealing scheme, our procedure utilizes a series of auxiliary microstructures that mimic a physical structural evolution process (e.g., grain growth). This amounts to constructing a series auxiliary energy landscapes that bias the convergence of the reconstruction to a favored (local) energy minimum. Moreover, our dynamic procedure can be naturally applied to reconstruct an actual microstructure evolution process. In contrast to commonly used evolution reconstruction approaches that separately generate individual static configurations, our procedure continuously evolves a single microstructure according to a time-dependent correlation function. The utility of our procedure is illustrated by successfully

  1. Virtual biomechanics: a new method for online reconstruction of force from EMG recordings.

    PubMed

    de Rugy, Aymar; Loeb, Gerald E; Carroll, Timothy J

    2012-12-01

    Current methods to reconstruct muscle contributions to joint torque usually combine electromyograms (EMGs) with cadaver-based estimates of biomechanics, but both are imperfect representations of reality. Here, we describe a new method that enables online force reconstruction in which we optimize a "virtual" representation of muscle biomechanics. We first obtain tuning curves for the five major wrist muscles from the mean rectified EMG during the hold phase of an isometric aiming task when a cursor is driven by actual force recordings. We then apply a custom, gradient-descent algorithm to determine the set of "virtual pulling vectors" that best reach the target forces when combined with the observed muscle activity. When these pulling vectors are multiplied by the rectified and low-pass-filtered (1.3 Hz) EMG of the five muscles online, the reconstructed force provides a close spatiotemporal match to the true force exerted at the wrist. In three separate experiments, we demonstrate that the technique works equally well for surface and fine-wire recordings and is sensitive to biomechanical changes elicited by a modification of the forearm posture. In all conditions tested, muscle tuning curves obtained when the task was performed with feedback of reconstructed force were similar to those obtained when the task was performed with real force feedback. This online force reconstruction technique provides new avenues to study the relationship between neural control and limb biomechanics since the "virtual biomechanics" can be systematically altered at will.

  2. Quantitative Assessment of Dynamic Control of Fingertip Forces After Pollicization

    PubMed Central

    Lightdale-Miric, Nina; Mueske, Nicole M.; Dayanidhi, Sudarshan; Loiselle, Jennifer; Berggren, Jamie; Lawrence, Emily L.; Stevanovic, Milan; Valero-Cuevas, Francisco J.; Wren, Tishya A. L.

    2014-01-01

    Dexterity after finger pollicization (reconstruction to thumb) is critical to functional outcomes. While most tests of hand function evaluate a combination of strength, coordination, and motor control, the Strength-Dexterity (S-D) paradigm focuses on the dynamic control of fingertip forces. We evaluated 10 pollicized and 5 non-pollicized hands from 8 participants ages 4–17 years (2 female, 6 male; 10.6 ± 4.5 years). Participants partially compressed and held an instrumented spring prone to buckling between the thumb and first finger to quantify dynamic control over the direction and magnitude of fingertip forces. They also completed traditional functional tests including grip, lateral pinch, and tripod pinch strength, Box and Blocks, and 9-hole peg test. Six of 10 pollicized hands and all non-pollicized hands had S-D scores comparable to typically developing children. However, dynamical analysis showed that pollicized hands exhibit greater variability in compression force, indicating poorer corrective action. Almost all pollicized hands scored below the normal range for the traditional functional tests. The S-D test Z-scores correlated moderately with Z-scores from the other functional tests (r=0.54–0.61; p= 0.02–0.04) but more weakly than amongst the other functional measures (r=0.58–0.83; p=0.0002–0.02), suggesting that the S-D test captures a different domain of function. A higher incidence of radial absence in the hands with poor S-D scores (3/4 vs. 0/6 in hands with normal S-D scores, p=0.03) was the only clinical characteristic associated with S-D outcome. Overall, these results suggest that while most pollicized hands can control fingertip forces, the nature of that control is altered. PMID:25262333

  3. A comparison of force reconstruction methods for a lumped mass beam

    SciTech Connect

    Bateman, V.I.; Mayes, R.L.; Carne, T.G.

    1992-11-01

    Two extensions of the force reconstruction method, the Sum of Weighted Accelerations Technique (SWAT), are presented in this paper; and the results are compared to those obtained using SWAT. SWAT requires the use of the structure`s elastic mode shapes for reconstruction of the applied force. Although based on the same theory, the two, new techniques do not rely on mode shapes to reconstruct the applied force and may be applied to structures whose mode shapes are not available. One technique uses the measured force and acceleration responses with the rigid body mode shapes to calculate the scalar weighting vector, so the technique is called SWAT-CAL (SWAT using a CALibrated force input). The second technique uses only the free-decay time response of the structure with the rigid body mode shapes to calculate the scalar weighting vector and is called SWAT-TEEM (SWAT using Time Eliminated Elastic Modes).

  4. A comparison of force reconstruction methods for a lumped mass beam

    SciTech Connect

    Bateman, V.I.; Mayes, R.L.; Carne, T.G.

    1992-01-01

    Two extensions of the force reconstruction method, the Sum of Weighted Accelerations Technique (SWAT), are presented in this paper; and the results are compared to those obtained using SWAT. SWAT requires the use of the structure's elastic mode shapes for reconstruction of the applied force. Although based on the same theory, the two, new techniques do not rely on mode shapes to reconstruct the applied force and may be applied to structures whose mode shapes are not available. One technique uses the measured force and acceleration responses with the rigid body mode shapes to calculate the scalar weighting vector, so the technique is called SWAT-CAL (SWAT using a CALibrated force input). The second technique uses only the free-decay time response of the structure with the rigid body mode shapes to calculate the scalar weighting vector and is called SWAT-TEEM (SWAT using Time Eliminated Elastic Modes).

  5. Effect of force on mononucleosomal dynamics

    PubMed Central

    Mihardja, Shirley; Spakowitz, Andrew J.; Zhang, Yongli; Bustamante, Carlos

    2006-01-01

    Using single-molecule optical-trapping techniques, we examined the force-induced dynamic behavior of a single nucleosome core particle. Our experiments using the DNA construct containing the 601 nucleosome-positioning sequence revealed that the nucleosome unravels in at least two major stages. The first stage, which we attributed to the unraveling of the first DNA wrap around the histone octamer, could be mechanically induced in a reversible manner, and when kept at constant force within a critical force range, exhibited two-state hopping behavior. From the hopping data, we determined the force-dependent equilibrium constant and rates for opening/closing of the outer wrap. Our investigation of the second unraveling event at various loading rates, which we attributed to the inner DNA wrap, revealed that this unraveling event cannot be described as a simple two-state process. We also looked at the behavior of the mononucleosome in a high-salt buffer, which revealed that the outer DNA wrap is more sensitive to changes in the ionic environment than the inner DNA wrap. These findings are needed to understand the energetics of nucleosome remodeling. PMID:17043216

  6. Dynamics of weakly coupled parametrically forced oscillators.

    PubMed

    Salgado Sánchez, P; Porter, J; Tinao, I; Laverón-Simavilla, A

    2016-08-01

    The dynamics of two weakly coupled parametric oscillators are studied in the neighborhood of the primary subharmonic instability. The nature of both primary and secondary instabilities depends in a critical way on the permutation symmetries, if any, that remain after coupling is considered, and this depends on the relative phases of the parametric forcing terms. Detailed bifurcation sets, revealing a complex series of transitions organized in part by Bogdanov-Takens points, are calculated for representative sets of parameters. In the particular case of out-of-phase forcing the predictions of the coupled oscillator model are compared with direct numerical simulations and with recent experiments on modulated cross waves. Both the initial Hopf bifurcation and the subsequent saddle-node heteroclinic bifurcation are confirmed.

  7. Reconstruction dynamics of recorded holograms in photochromic glass.

    PubMed

    Mihailescu, Mona; Pavel, Eugen; Nicolae, Vasile B

    2011-06-20

    We have investigated the dynamics of the record-erase process of holograms in photochromic glass using continuum Nd:YVO₄ laser radiation (λ=532 nm). A bidimensional microgrid pattern was formed and visualized in photochromic glass, and its diffraction efficiency decay versus time (during reconstruction step) gave us information (D, Δn) about the diffusion process inside the material. The recording and reconstruction processes were carried out in an off-axis setup, and the images of the reconstructed object were recorded by a CCD camera. Measurements realized on reconstructed object images using holograms recorded at a different incident power laser have shown a two-stage process involved in silver atom kinetics.

  8. Dynamic Ising model: reconstruction of evolutionary trees

    NASA Astrophysics Data System (ADS)

    de Oliveira, P. M. C.

    2013-09-01

    An evolutionary tree is a cascade of bifurcations starting from a single common root, generating a growing set of daughter species as time goes by. ‘Species’ here is a general denomination for biological species, spoken languages or any other entity which evolves through heredity. From the N currently alive species within a clade, distances are measured through pairwise comparisons made by geneticists, linguists, etc. The larger is such a distance that, for a pair of species, the older is their last common ancestor. The aim is to reconstruct the previously unknown bifurcations, i.e. the whole clade, from knowledge of the N(N - 1)/2 quoted distances, which are taken for granted. A mechanical method is presented and its applicability is discussed.

  9. Relativistic Newtonian Dynamics under a central force

    NASA Astrophysics Data System (ADS)

    Friedman, Yaakov

    2016-10-01

    Planck's formula and General Relativity indicate that potential energy influences spacetime. Using Einstein's Equivalence Principle and an extension of his Clock Hypothesis, an explicit description of this influence is derived. We present a new relativity model by incorporating the influence of the potential energy on spacetime in Newton's dynamics for motion under a central force. This model extends the model used by Friedman and Steiner (EPL, 113 (2016) 39001) to obtain the exact precession of Mercury without curving spacetime. We also present a solution of this model for a hydrogen-like atom, which explains the reason for a probabilistic description.

  10. Dynamic force signal processing system of a robot manipulator

    NASA Technical Reports Server (NTRS)

    Uchiyama, M.; Kitagaki, K.; Hakomori, K.

    1987-01-01

    If dynamic noises such as those caused by the inertia forces of the hand can be eliminated from the signal of the force sensor installed on the wrist of the robot manipulator and if the necessary information of the external force can be detected with high sensitivity and high accuracy, a fine force feedback control for robots used in high speed and various fields will be possible. As the dynamic force sensing system, an external force estimate method with the extended Kalman filter is suggested and simulations and tests for a one axis force were performed. Later a dynamic signal processing system of six axes was composed and tested. The results are presented.

  11. Reconstruction of driving forces from nonstationary time series including stationary regions and application to climate change

    NASA Astrophysics Data System (ADS)

    Zhang, Feng; Yang, Peicai; Fraedrich, Klaus; Zhou, Xiuji; Wang, Geli; Li, Jiangnan

    2017-05-01

    A new method based on cross-prediction errors is proposed for the rebuilding of the driving forces exerting influence on nonstationary systems. This method can retrieve driving force from nonlinear nonstationary time series including stationary regions. The numerical tests show that the method is very accurate. Generally, the correlation coefficients between the original and reconstructed driving force are larger than 0.96 for three commonly used maps for single-species discrete chaotic ecosystems. By using the above method, we reconstructed the driving force for an observed time series of the northern hemisphere monthly mean surface air temperature anomalies. Wavelet transformation method is applied to analyze the calculated driving forces. The results illustrated that the driving forces are characterized by the Hale's solar cycle and the Atlantic Multi-decadal Oscillation, which are the two main separate degrees of freedom on the climate.

  12. A method for myocardial contraction force reconstruction for tissue viability assessment

    NASA Astrophysics Data System (ADS)

    Linte, Cristian A.; Peters, Terry M.; Samani, Abbas

    2006-03-01

    Myocardial infarction results in myocardial necrosis, usually caused by an imbalance in the oxygen supply and demand to myocardial tissue. To our knowledge there is no technique that can provide quantitative direct information concerning the intensity, extent and location of the infarction. Contraction forces generated by cardiac tissues represent a quantitative and direct measure of the myocardial functionality, since it is expected that infarcted tissue generate little or no contraction force. Our objective is to develop a biomechanics based reconstruction technique to image myocardial contraction forces, for the purpose of assessing the viability of cardiac tissues. This technique is designed to reconstruct the contraction forces by inverting myocardial tissue displacement data acquired throughout heart beat cycles using conventional imaging techniques. Recognizing that myocardial contraction force distribution is 3D, we assumed an axisymmetric myocardial geometry to demonstrate the concept. With this assumption, the inversion algorithm was developed and implemented in 2D space. As a preliminary analysis, a simulation involving a 2D representation of myocardial wall tissue was carried out. The tissue was modeled as a homogeneous material with isotropic and linear elastic material properties. Assuming an axisymmetric contraction force distribution, a finite element analysis was performed on the tissue model, and a 2D displacement field was generated. The developed inversion algorithm was then employed to reconstruct the force distribution, which was ultimately compared to the original force field. The reconstruction error, estimated as the difference between the two force fields and normalized by the magnitude of the reference distribution, averaged to +/-10%. Results demonstrate that our myocardial contraction force reconstruction algorithm is reasonably accurate and robust.

  13. Untapped Air Force Resources for Stabilization and Reconstruction Operations

    DTIC Science & Technology

    2006-06-01

    Gazette 88, no. 9 (September 2004): 74-80. 9 Scott Feil , “Building Better Foundations: Security in Postconflict Reconstruction,” The Washington...resources. 44 Nina M. Serafino and Martin A. Weiss, “Peacekeeping and Post-Conflict...be found in Public Law 108-447, “Consolidated Appropriations Act for Fiscal Year 2005.” 59 Nina M. Serafino and Martin A. Weiss, “Peacekeeping and

  14. Understanding Last Millennium Climate Change: Reconstructions, Testing climate model response to volcanic forcing, and Evaluating efficacy of reconstruction methods

    NASA Astrophysics Data System (ADS)

    Wahl, E. R.

    2011-12-01

    A reconstruction of summer temperature from pollen records in central North America is presented covering approximately the last 1000 years. A relatively warm Medieval period (~1100-1500) and cool Little Ice Age (~1500-1900, coolest during the early 19th century) are reconstructed using a generalized linear model employing Bayesian inference. Plausible modern circulation analogs are considered, showing pressure composites that may have been more prevalent during the earlier compared to the later period. These analog patterns are consistent with independent reconstructions of positive NAO/AMO-like conditions during Medieval times, both of which are similar to circulation patterns simulated by GCMs using generalized sea surface temperatures consistent with La Niña-like conditions in the tropical Indo-Pacific region. The climatic patterns that generally lead to warmer summers in the study region are additionally associated with anomalous high-pressure ridging and large-scale drought, which is also consistent with drought reconstructions for North America during Medieval times. New tree ring-based reconstructions of the surface temperature field over the past 500 years in western North America and the adjacent Pacific Ocean are also presented. A key feature of these reconstructions occurs in the early 19th century, which is the coldest period across the region during this time, similar to the center-continent pollen-based record. The spatially-explicit field reconstructions are used to drive analysis of regional responses to volcanic forcing, providing a basis for examining agreement between the reconstructed response patterns and the corresponding responses in GCM simulations. The ultimate goal of comparison is to identify regionally best-performing GCM output to use as forcing input in regional impacts models. Initial application of the regional post-volcanic fingerprint to parallel analyses done with members of the NCAR CCSM suite of models suggests that

  15. Reconstruction of Attitude Dynamics of Free Falling Units

    NASA Astrophysics Data System (ADS)

    Yuan, Y.; Ivchenko, N.; Tibert, G.; Schlatter, N. M.

    2015-09-01

    Attitude reconstruction of a free falling sphere for the experiment Multiple Spheres for Characterization of Atmosphere Temperatures (MUSCAT) is studied in this paper. The attitude dynamics is modeled through Euler's rotational equations of motion. To estimate uncertain parameters in this model such as the matrix of inertia and the lever arm for the dynamic pressure with respect to the center of mass, the dynamics reconstruction can be formulated as an optimization problem. The goal is to minimize the deviation between the measurements and the propagation from the system equations. This approach was tested against a couple of flight data sets which correspond to different periods of time. The result is very reasonable compared to the laboratory test. The estimate can be improved further through allowing drag coefficients variable and taking advantage of measurements from a magnetometer in numerical calculation.

  16. Forced and internal variability in temperature simulations and reconstructions of the Common Era

    NASA Astrophysics Data System (ADS)

    Fernández-Donado, Laura; Fidel González-Rouco, J.; Garcia-Bustamante, Elena; Smerdon, Jason S.; Luterbacher, Juerg; Raible, Christoph C.

    2016-04-01

    The relatively short ranges of external forcing variability within the CE represent a challenge in as much as the consistency between simulations and reconstructions can be affected by the large uncertainties in their respective responses to the external forcings. One of the core questions within this work relates therefore the extent to which a straight response to the external forcing can be identified during the period under study and whether this signal is common to simulated and reconstructed temperature. This study is based on an exhaustive compilation, analysis and intercomparison of the available hemispherical and global temperature reconstructions as well as a complete ensemble of simulations including both PMIP3/CMIP5 and non-PMIP3 model experiments. In addition, the various external forcing configurations applied to the models are characterized and a Total External Forcing, including all the individual forcing contributors, is developed for each experiment. Based on the linear relationship found at multidecadal and longer timescales during the last millennium between the temperature and the total external forcing, a quantitative metric of the ratio of response, the so-called Last Millennium Transient Climate Response (LMTCR), is obtained and compared for simulations and reconstructions. Within the LMTCR context, a significant quantitative consistency between the simulations and reconstructions is addressed. This work also offers a discussion about the impact that a range of generally accepted methodological approaches might have on the reconstructed ensemble uncertainties and their influences on model-data comparison exercises. A segregation among the various existing spatial targets within the NH, based on the different level of temperatura variability observed in the series, suggests a lower level of model-data consistency during the MCA than previously reported.

  17. Impact-force sparse reconstruction from highly incomplete and inaccurate measurements

    NASA Astrophysics Data System (ADS)

    Qiao, Baijie; Zhang, Xingwu; Gao, Jiawei; Chen, Xuefeng

    2016-08-01

    The classical l2-norm-based regularization methods applied for force reconstruction inverse problem require that the number of measurements should not be less than the number of unknown sources. Taking into account the sparse nature of impact-force in time domain, we develop a general sparse methodology based on minimizing l1-norm for solving the highly underdetermined model of impact-force reconstruction. A monotonic two-step iterative shrinkage/thresholding (MTWIST) algorithm is proposed to find the sparse solution to such an underdetermined model from highly incomplete and inaccurate measurements, which can be problematic with Tikhonov regularization. MTWIST is highly efficient for large-scale ill-posed problems since it mainly involves matrix-vector multiplies without matrix factorization. In sparsity frame, the proposed sparse regularization method can not only determine the actual impact location from many candidate sources but also simultaneously reconstruct the time history of impact-force. Simulation and experiment including single-source and two-source impact-force reconstruction are conducted on a simply supported rectangular plate and a shell structure to illustrate the effectiveness and applicability of MTWIST, respectively. Both the locations and force time histories of the single-source and two-source cases are accurately reconstructed from a single accelerometer, where the high noise level is considered in simulation and the primary noise in experiment is supposed to be colored noise. Meanwhile, the consecutive impact-forces reconstruction in a large-scale (greater than 104) sparse frame illustrates that MTWIST has advantages of computational efficiency and identification accuracy over Tikhonov regularization.

  18. Asymmetric ground reaction forces and knee kinematics during squat after anterior cruciate ligament (ACL) reconstruction.

    PubMed

    Sanford, Brooke A; Williams, John L; Zucker-Levin, Audrey; Mihalko, William M

    2016-10-01

    This bilateral squat study tests whether people with anterior cruciate ligament (ACL) reconstruction have symmetric three-dimensional ground reaction forces (GRFs) and symmetric anterior-posterior (AP) translation rates of the femur with respect to the tibia when compared with healthy control subjects. We hypothesized that there would be no long-term asymmetry in knee kinematics and kinetics in ACL reconstructed subjects following surgery and rehabilitation. Position and GRF data were collected on eight ACL reconstructed and eight control subjects during bilateral squat. The rate of relative AP translation was determined for each subject. Principal component models were developed for each of the three GRF waveforms. Principal component scores were used to assess symmetry within the ACL reconstructed group and within the control group. ACL reconstructed knees analyzed in early flexion during squat descent displayed a four-fold greater rate of change in anterior translation in the reconstructed knee relative to the contralateral side than did a similar comparison of normal knees. Differences were found between the ACL reconstructed subjects' injured and uninjured limbs for all GRFs. Subjects following ACL reconstruction had asymmetric GRFs and relative rates of AP translation at an average of seven years after ACL reconstructive surgery when compared with control subjects. These alterations in loading may lead to altered load distributions across the knee joint and may put some subjects at risk for future complications such as osteoarthritis. Copyright © 2015 Elsevier B.V. All rights reserved.

  19. Force production and reactive strength capabilities after anterior cruciate ligament reconstruction.

    PubMed

    Flanagan, Eamonn P; Galvin, Lorcan; Harrison, Andrew J

    2008-01-01

    Ambiguity exists in the literature regarding whether individuals can restore function to 100% after anterior cruciate ligament (ACL) reconstruction. The response of force production and reactive strength in stretch-shortening cycle activities after surgery has not been established. To compare reactive strength and force production capabilities between the involved and uninvolved legs of participants who had undergone ACL reconstruction and rehabilitation with the reactive strength and force production capabilities of a control group. Repeated measures, cross-sectional. Research laboratory. Ten participants with ACL reconstructions who had returned to their chosen sports and 10 age-matched and activity-matched control subjects. We screened the ACL group with the International Knee Documentation Committee Subjective Knee Evaluation Form and functional performance tests to measure a basic level of function. We assessed force production capabilities and reactive strength using squat, countermovement, drop, and rebound jump protocols on a force sledge apparatus. The dependent variables were flight time, peak vertical ground reaction force, leg spring stiffness, and reactive strength index. No participant in the ACL group exhibited functional deficits in comparison with normative values or the control group. Using the force sledge apparatus, we found no notable differences in force production capabilities and reactive strength in the ACL group when comparing the involved with uninvolved legs or the degree of difference between legs with the control group. After ACL reconstruction, rehabilitated participants did not exhibit deficits in force production or reactive strength capabilities. Our results suggest that force production and reactive strength capabilities can be restored to levels comparable with the uninjured control limb and may not be limiting factors in ACL recovery.

  20. Influence of surfactants in forced dynamic dewetting.

    PubMed

    Henrich, Franziska; Fell, Daniela; Truszkowska, Dorota; Weirich, Marcel; Anyfantakis, Manos; Nguyen, Thi-Huong; Wagner, Manfred; Auernhammer, Günter K; Butt, Hans-Jürgen

    2016-09-20

    In this work we show that the forced dynamic dewetting of surfactant solutions depends sensitively on the surfactant concentration. To measure this effect, a hydrophobic rotating cylinder was horizontally half immersed in aqueous surfactant solutions. Dynamic contact angles were measured optically by extrapolating the contour of the meniscus to the contact line. Anionic (sodium 1-decanesulfonate, S-1DeS), cationic (cetyl trimethylammonium bromide, CTAB) and nonionic surfactants (C4E1, C8E3 and C12E5) with critical micelle concentrations (CMCs) spanning four orders of magnitude were used. The receding contact angle in water decreased with increasing velocity. This decrease was strongly enhanced when adding surfactant, even at surfactant concentrations of 10% of the critical micelle concentration. Plots of the receding contact angle-versus-velocity almost superimpose when being plotted at the same relative concentration (concentration/CMC). Thus the rescaled concentration is the dominating property for dynamic dewetting. The charge of the surfactants did not play a role, thus excluding electrostatic effects. The change in contact angle can be interpreted by local surface tension gradients, i.e. Marangoni stresses, close to the three-phase contact line. The decrease of dynamic contact angles with velocity follows two regimes. Despite the existence of Marangoni stresses close to the contact line, for a dewetting velocity above 1-10 mm s(-1) the hydrodynamic theory is able to describe the experimental results for all surfactant concentrations. At slower velocities an additional steep decrease of the contact angle with velocity was observed. Particle tracking velocimetry showed that the flow profiles do not differ with and without surfactant on a scales >100 μm.

  1. A molecular dynamics investigation of surface reconstruction on magnetite (001)

    NASA Astrophysics Data System (ADS)

    Rustad, J. R.; Wasserman, E.; Felmy, A. R.

    1999-07-01

    Molecular dynamics calculations using analytical potential functions with polarizable oxygen ions have been used to identify a novel mode of reconstruction on the half-occupied tetrahedral layer termination of the magnetite (Fe 3O 4) (001) surface. In the proposed reconstruction, the twofold coordinated iron ion in the top monolayer rotates downward to occupy a vacant half-octahedral site in the plane of the second-layer iron ions. At the same time, half of the tetrahedral iron ions in the third iron layer are pushed upward to occupy an adjacent octahedral vacancy at the level of the second-layer iron ions. The other half of the third-layer iron ions remain roughly in their original positions. The proposed reconstruction is consistent with recent low-energy electron diffraction and X-ray photoelectron spectroscopy results. It also provides a compelling interpretation for the arrangement of atoms suggested by high-resolution scanning-tunneling microscopy studies.

  2. A diagonal landing task to assess dynamic postural stability in ACL reconstructed females.

    PubMed

    Patterson, Matthew R; Delahunt, Eamonn

    2013-12-01

    Previous research has used time to stabilization (TTS) from forward landing tasks to assess dynamic postural stability in ACL reconstructed (ACLR) athletes in order to identify impaired sensorimotor control and mechanical stability. This may not be an appropriate test due to the fact that research has suggested that ACL injury has a multi-planar mechanism of injury. The purpose of the present study was to compare TTS values from a forward land and a diagonal land to determine if diagonal landing TTS values are more sensitive to dynamic postural stability deficits in female ACLR athletes. A group of ACL reconstructed female athletes and a group of female control athletes performed three forward lands and three diagonal lands onto a force-plate and remained still on one foot for 15s. TTS was calculated for the anterior-posterior and medial-lateral ground reaction forces as well as the resultant vector of both forces. All three TTS values were significantly increased in the ACLR group from the control group for the diagonal landing task. There was no difference in TTS values between the groups for the forward landing task. TTS values from a diagonal landing are more sensitive at detecting impaired dynamic postural stability in a group of female ACLR athletes compared to TTS values from a forward land. III - Casecontrolled study. Copyright © 2013 Elsevier B.V. All rights reserved.

  3. Measurement of dynamic and static radiation force on a sphere.

    PubMed

    Chen, Shigao; Silva, Glauber T; Kinnick, Randall R; Greenleaf, James F; Fatemi, Mostafa

    2005-05-01

    Dynamic radiation force from ultrasound has found increasing applications in elasticity imaging methods such as vibro-acoustography. Radiation force that has both static and dynamic components can be produced by interfering two ultrasound beams of slightly different frequencies. This paper presents a method to measure both static and dynamic components of the radiation force on a sphere suspended by thin threads in water. Due to ultrasound radiation force, the sphere deflects to an equilibrant position and vibrates around it. The static radiation force is estimated from the deflection of the sphere. The dynamic radiation force is estimated from the calculated radiation impedance of the sphere and its vibration speed measured by a laser vibrometer. Experimental results on spheres of different size, vibrated at various frequencies, confirm the theoretical prediction that the dynamic and static radiation force on a sphere have approximately equal magnitudes [G. T. Silva, Phys. Rev. E 71, 056617 (2005)].

  4. Climate Forcing Reconstructions for Use in PMIP Simulations of the Last Millennium (v1.0)

    NASA Technical Reports Server (NTRS)

    Schmidt, Gavin A.; Jungclaus, J.H.; Steinhilber, F.; Vieira, L. E. A.; Ammann, C. M.; Bard, E.; Braconnot, P.; Crowley, T. J.; Delayque, G.; Joos, F.; Krivova, N. A.; Muscheler, R.; Otto-Bliesner, B. L.; Pongratz, J.; Shindell, D. T.; Solanki, S. K.

    2011-01-01

    Simulations of climate over the Last Millennium (850-1850 CE) have been incorporated into the third phase of the Paleoclimate Modelling Intercomparison Project (PMIP3). The drivers of climate over this period are chiefly orbital, solar, volcanic, changes in land use/land cover and some variation in greenhouse gas levels. While some of these effects can be easily defined, the reconstructions of solar, volcanic and land use-related forcing are more uncertain. We describe here the approach taken in defining the scenarios used in PMIP3, document the forcing reconstructions and discuss likely implications.

  5. Validation of a Laboratory Method for Evaluating Dynamic Properties of Reconstructed Equine Racetrack Surfaces

    PubMed Central

    Setterbo, Jacob J.; Chau, Anh; Fyhrie, Patricia B.; Hubbard, Mont; Upadhyaya, Shrini K.; Symons, Jennifer E.; Stover, Susan M.

    2012-01-01

    Background Racetrack surface is a risk factor for racehorse injuries and fatalities. Current research indicates that race surface mechanical properties may be influenced by material composition, moisture content, temperature, and maintenance. Race surface mechanical testing in a controlled laboratory setting would allow for objective evaluation of dynamic properties of surface and factors that affect surface behavior. Objective To develop a method for reconstruction of race surfaces in the laboratory and validate the method by comparison with racetrack measurements of dynamic surface properties. Methods Track-testing device (TTD) impact tests were conducted to simulate equine hoof impact on dirt and synthetic race surfaces; tests were performed both in situ (racetrack) and using laboratory reconstructions of harvested surface materials. Clegg Hammer in situ measurements were used to guide surface reconstruction in the laboratory. Dynamic surface properties were compared between in situ and laboratory settings. Relationships between racetrack TTD and Clegg Hammer measurements were analyzed using stepwise multiple linear regression. Results Most dynamic surface property setting differences (racetrack-laboratory) were small relative to surface material type differences (dirt-synthetic). Clegg Hammer measurements were more strongly correlated with TTD measurements on the synthetic surface than the dirt surface. On the dirt surface, Clegg Hammer decelerations were negatively correlated with TTD forces. Conclusions Laboratory reconstruction of racetrack surfaces guided by Clegg Hammer measurements yielded TTD impact measurements similar to in situ values. The negative correlation between TTD and Clegg Hammer measurements confirms the importance of instrument mass when drawing conclusions from testing results. Lighter impact devices may be less appropriate for assessing dynamic surface properties compared to testing equipment designed to simulate hoof impact (TTD

  6. Free energy reconstruction from steered dynamics without post-processing

    SciTech Connect

    Athenes, Manuel; Marinica, Mihai-Cosmin

    2010-09-20

    Various methods achieving importance sampling in ensembles of nonequilibrium trajectories enable one to estimate free energy differences and, by maximum-likelihood post-processing, to reconstruct free energy landscapes. Here, based on Bayes theorem, we propose a more direct method in which a posterior likelihood function is used both to construct the steered dynamics and to infer the contribution to equilibrium of all the sampled states. The method is implemented with two steering schedules. First, using non-autonomous steering, we calculate the migration barrier of the vacancy in Fe-{alpha}. Second, using an autonomous scheduling related to metadynamics and equivalent to temperature-accelerated molecular dynamics, we accurately reconstruct the two-dimensional free energy landscape of the 38-atom Lennard-Jones cluster as a function of an orientational bond-order parameter and energy, down to the solid-solid structural transition temperature of the cluster and without maximum-likelihood post-processing.

  7. Molecular dynamics simulation of reconstructive phase transitionson an anhydrous zeolite

    NASA Astrophysics Data System (ADS)

    Ceriani, C.; Laio, A.; Fois, E.; Gamba, A.; Martoňák, R.; Parrinello, M.

    2004-09-01

    The structural transformation of a framework aluminosilicate, Li-ABW , is studied using molecular dynamics. The calculations are carried out by applying the method presented by

    Martoňák et al. [Phys. Rev. Lett. 90, 075503 (2003)
    ], that allows for the exploration of the Gibbs free energy as a function of the cell parameters by history-dependent dynamics. We show that this technique allows for an extensive exploration of the phase space also for complex polyatomic material, such as a zeolite, and allows for the successful prediction of a reconstructive phase transition at the pressure and temperature of experimental relevance. In particular, we observe a reconstructive transition from anhydrous Li-ABW to eucryptite at the temperature of ˜920 K , as experimentally observed. The steps initiating the transformation and the transition pathway are discussed.

  8. Hydrodynamic boundary conditions and dynamic forces between bubbles and surfaces.

    PubMed

    Manor, Ofer; Vakarelski, Ivan U; Tang, Xiaosong; O'Shea, Sean J; Stevens, Geoffrey W; Grieser, Franz; Dagastine, Raymond R; Chan, Derek Y C

    2008-07-11

    Dynamic forces between a 50 microm radius bubble driven towards and from a mica plate using an atomic force microscope in electrolyte and in surfactant exhibit different hydrodynamic boundary conditions at the bubble surface. In added surfactant, the forces are consistent with the no-slip boundary condition at the mica and bubble surfaces. With no surfactant, a new boundary condition that accounts for the transport of trace surface impurities explains variations of dynamic forces at different speeds and provides a direct connection between dynamic forces and surface transport effects at the air-water interface.

  9. Hydrodynamic Boundary Conditions and Dynamic Forces between Bubbles and Surfaces

    NASA Astrophysics Data System (ADS)

    Manor, Ofer; Vakarelski, Ivan U.; Tang, Xiaosong; O'Shea, Sean J.; Stevens, Geoffrey W.; Grieser, Franz; Dagastine, Raymond R.; Chan, Derek Y. C.

    2008-07-01

    Dynamic forces between a 50μm radius bubble driven towards and from a mica plate using an atomic force microscope in electrolyte and in surfactant exhibit different hydrodynamic boundary conditions at the bubble surface. In added surfactant, the forces are consistent with the no-slip boundary condition at the mica and bubble surfaces. With no surfactant, a new boundary condition that accounts for the transport of trace surface impurities explains variations of dynamic forces at different speeds and provides a direct connection between dynamic forces and surface transport effects at the air-water interface.

  10. Developing a Low-Cost Force Treadmill via Dynamic Modeling

    PubMed Central

    Hong, Chih-Yuan; Sung, Jia-Li

    2017-01-01

    By incorporating force transducers into treadmills, force platform-instrumented treadmills (commonly called force treadmills) can collect large amounts of gait data and enable the ground reaction force (GRF) to be calculated. However, the high cost of force treadmills has limited their adoption. This paper proposes a low-cost force treadmill system with force sensors installed underneath a standard exercise treadmill. It identifies and compensates for the force transmission dynamics from the actual GRF applied on the treadmill track surface to the force transmitted to the force sensors underneath the treadmill body. This study also proposes a testing procedure to assess the GRF measurement accuracy of force treadmills. Using this procedure in estimating the GRF of “walk-on-the-spot motion,” it was found that the total harmonic distortion of the tested force treadmill system was about 1.69%, demonstrating the effectiveness of the approach.

  11. External force back-projective composition and globally deformable optimization for 3-D coronary artery reconstruction

    NASA Astrophysics Data System (ADS)

    Yang, Jian; Cong, Weijian; Chen, Yang; Fan, Jingfan; Liu, Yue; Wang, Yongtian

    2014-02-01

    The clinical value of the 3D reconstruction of a coronary artery is important for the diagnosis and intervention of cardiovascular diseases. This work proposes a method based on a deformable model for reconstructing coronary arteries from two monoplane angiographic images acquired from different angles. First, an external force back-projective composition model is developed to determine the external force, for which the force distributions in different views are back-projected to the 3D space and composited in the same coordinate system based on the perspective projection principle of x-ray imaging. The elasticity and bending forces are composited as an internal force to maintain the smoothness of the deformable curve. Second, the deformable curve evolves rapidly toward the true vascular centerlines in 3D space and angiographic images under the combination of internal and external forces. Third, densely matched correspondence among vessel centerlines is constructed using a curve alignment method. The bundle adjustment method is then utilized for the global optimization of the projection parameters and the 3D structures. The proposed method is validated on phantom data and routine angiographic images with consideration for space and re-projection image errors. Experimental results demonstrate the effectiveness and robustness of the proposed method for the reconstruction of coronary arteries from two monoplane angiographic images. The proposed method can achieve a mean space error of 0.564 mm and a mean re-projection error of 0.349 mm.

  12. External force back-projective composition and globally deformable optimization for 3-D coronary artery reconstruction.

    PubMed

    Yang, Jian; Cong, Weijian; Chen, Yang; Fan, Jingfan; Liu, Yue; Wang, Yongtian

    2014-02-21

    The clinical value of the 3D reconstruction of a coronary artery is important for the diagnosis and intervention of cardiovascular diseases. This work proposes a method based on a deformable model for reconstructing coronary arteries from two monoplane angiographic images acquired from different angles. First, an external force back-projective composition model is developed to determine the external force, for which the force distributions in different views are back-projected to the 3D space and composited in the same coordinate system based on the perspective projection principle of x-ray imaging. The elasticity and bending forces are composited as an internal force to maintain the smoothness of the deformable curve. Second, the deformable curve evolves rapidly toward the true vascular centerlines in 3D space and angiographic images under the combination of internal and external forces. Third, densely matched correspondence among vessel centerlines is constructed using a curve alignment method. The bundle adjustment method is then utilized for the global optimization of the projection parameters and the 3D structures. The proposed method is validated on phantom data and routine angiographic images with consideration for space and re-projection image errors. Experimental results demonstrate the effectiveness and robustness of the proposed method for the reconstruction of coronary arteries from two monoplane angiographic images. The proposed method can achieve a mean space error of 0.564 mm and a mean re-projection error of 0.349 mm.

  13. Tensor-based dynamic reconstruction method for electrical capacitance tomography

    NASA Astrophysics Data System (ADS)

    Lei, J.; Mu, H. P.; Liu, Q. B.; Li, Z. H.; Liu, S.; Wang, X. Y.

    2017-03-01

    Electrical capacitance tomography (ECT) is an attractive visualization measurement method, in which the acquisition of high-quality images is beneficial for the understanding of the underlying physical or chemical mechanisms of the dynamic behaviors of the measurement objects. In real-world measurement environments, imaging objects are often in a dynamic process, and the exploitation of the spatial-temporal correlations related to the dynamic nature will contribute to improving the imaging quality. Different from existing imaging methods that are often used in ECT measurements, in this paper a dynamic image sequence is stacked into a third-order tensor that consists of a low rank tensor and a sparse tensor within the framework of the multiple measurement vectors model and the multi-way data analysis method. The low rank tensor models the similar spatial distribution information among frames, which is slowly changing over time, and the sparse tensor captures the perturbations or differences introduced in each frame, which is rapidly changing over time. With the assistance of the Tikhonov regularization theory and the tensor-based multi-way data analysis method, a new cost function, with the considerations of the multi-frames measurement data, the dynamic evolution information of a time-varying imaging object and the characteristics of the low rank tensor and the sparse tensor, is proposed to convert the imaging task in the ECT measurement into a reconstruction problem of a third-order image tensor. An effective algorithm is developed to search for the optimal solution of the proposed cost function, and the images are reconstructed via a batching pattern. The feasibility and effectiveness of the developed reconstruction method are numerically validated.

  14. Long-range memory in internal and forced dynamics of millennium-long climate model simulations

    NASA Astrophysics Data System (ADS)

    Østvand, L.; Nilsen, T.; Rypdal, K.; Divine, D.; Rypdal, M.

    2014-08-01

    Northern Hemisphere (NH) temperature records from a palaeoclimate reconstruction and a number of millennium-long climate model experiments are investigated for long-range memory (LRM). The models are two Earth system models and two atmosphere-ocean general circulation models. The periodogram, detrended fluctuation analysis and wavelet variance analysis are applied to examine scaling properties and to estimate a scaling exponent of the temperature records. A simple linear model for the climate response to external forcing is also applied to the reconstruction and the forced climate model runs, and then compared to unforced control runs to extract the LRM generated by internal dynamics of the climate system. The climate models show strong persistent scaling with power spectral densities of the form S(f) ~ f -β with 0.8 < β < 1 on timescales from years to several centuries. This is somewhat stronger persistence than found in the reconstruction (β ≈ 0.7). We find no indication that LRM found in these model runs is induced by external forcing, which suggests that LRM on sub-decadal to century time scales in NH mean temperatures is a property of the internal dynamics of the climate system. Reconstructed and instrumental sea surface temperature records for a local site, Reykjanes Ridge, are also studied, showing that strong persistence is found also for local ocean temperature.

  15. Studies of the effects of gravitational and inertial forces on cardiovascular and respiratory dynamics

    NASA Technical Reports Server (NTRS)

    Ritman, E. L.; Wood, E. H.

    1973-01-01

    The current status and application are described of the biplane video roentgen densitometry, videometry and video digitization systems. These techniques were developed, and continue to be developed for studies of the effects of gravitational and inertial forces on cardiovascular and respiratory dynamics in intact animals and man. Progress is reported in the field of lung dynamics and three-dimensional reconstruction of the dynamic thoracic contents from roentgen video images. It is anticipated that these data will provide added insight into the role of shape and internal spatial relationships (which is altered particularly by acceleration and position of the body) of these organs as an indication of their functional status.

  16. Tropical forcing of increased Southern Ocean climate variability revealed by a 140-year subantarctic temperature reconstruction

    NASA Astrophysics Data System (ADS)

    Turney, Chris S. M.; Fogwill, Christopher J.; Palmer, Jonathan G.; van Sebille, Erik; Thomas, Zoë; McGlone, Matt; Richardson, Sarah; Wilmshurst, Janet M.; Fenwick, Pavla; Zunz, Violette; Goosse, Hugues; Wilson, Kerry-Jayne; Carter, Lionel; Lipson, Mathew; Jones, Richard T.; Harsch, Melanie; Clark, Graeme; Marzinelli, Ezequiel; Rogers, Tracey; Rainsley, Eleanor; Ciasto, Laura; Waterman, Stephanie; Thomas, Elizabeth R.; Visbeck, Martin

    2017-03-01

    Occupying about 14 % of the world's surface, the Southern Ocean plays a fundamental role in ocean and atmosphere circulation, carbon cycling and Antarctic ice-sheet dynamics. Unfortunately, high interannual variability and a dearth of instrumental observations before the 1950s limits our understanding of how marine-atmosphere-ice domains interact on multi-decadal timescales and the impact of anthropogenic forcing. Here we integrate climate-sensitive tree growth with ocean and atmospheric observations on southwest Pacific subantarctic islands that lie at the boundary of polar and subtropical climates (52-54° S). Our annually resolved temperature reconstruction captures regional change since the 1870s and demonstrates a significant increase in variability from the 1940s, a phenomenon predating the observational record. Climate reanalysis and modelling show a parallel change in tropical Pacific sea surface temperatures that generate an atmospheric Rossby wave train which propagates across a large part of the Southern Hemisphere during the austral spring and summer. Our results suggest that modern observed high interannual variability was established across the mid-twentieth century, and that the influence of contemporary equatorial Pacific temperatures may now be a permanent feature across the mid- to high latitudes.

  17. Impaired voluntary quadriceps force control following anterior cruciate ligament reconstruction: relationship with knee function.

    PubMed

    Perraton, Luke; Clark, Ross; Crossley, Kay; Pua, Yong-Hao; Whitehead, Tim; Morris, Hayden; Telianidis, Stacey; Bryant, Adam

    2017-05-01

    Impairments in quadriceps force control and altered quadriceps and hamstring muscle activation strategies have been observed following anterior cruciate ligament reconstruction; however, the functional implications of these impairments are unclear. This study examined the cross-sectional associations between quadriceps force control, quadriceps activation, hamstring coactivation and clinically assessed knee function following anterior cruciate ligament reconstruction with a hamstring graft. Sixty-six patients (18 ± 3 months following surgery) and 41 uninjured individuals participated. Quadriceps force control was assessed using an isometric knee extension task. Participants cyclically increased and decreased quadriceps force at slow speeds between 5 and 30 % maximum voluntary isometric contraction matching a moving target displayed on a screen. Quadriceps activation and hamstring coactivation were assessed concurrently using surface electromyography. Knee function was assessed with the Cincinnati Knee Rating Scale and three single-leg hop tests. The reconstructed group completed the task with 48 % greater root-mean-square error (RMSE), indicating significantly worse quadriceps force control (p < 0.001). In a multivariable model adjusted for sex, greater RMSE and greater lateral hamstring coactivation were significantly associated with worse knee function that is greater odds of scoring <85 % on one or more knee functional assessment. Less-accurate quadriceps force output and greater hamstring coactivation are associated with worse knee joint function following anterior cruciate ligament reconstruction and may contribute to irregular knee joint loading and the onset or progression of knee osteoarthritis. Impairments in quadriceps force control and altered muscle activation strategies may be modifiable through neuromuscular training, and this is an area for future research. Case-control study, Level III.

  18. Reconstruction of Holocene carbon dynamics in a large boreal peatland complex, southern Finland

    NASA Astrophysics Data System (ADS)

    Mathijssen, Paul J. H.; Väliranta, Minna; Korrensalo, Aino; Alekseychik, Pavel; Vesala, Timo; Rinne, Janne; Tuittila, Eeva-Stiina

    2016-06-01

    Holocene peatland development and associated carbon (C) dynamics were reconstructed for a southern boreal Finnish peatland complex with fen and bog areas. In order to assess the role of local factors and long-term allogenic climate forcing in peatland development patterns, we studied a total of 18 peat cores and reconstructed vertical peat growth and lateral peat area expansion rates, the C accumulation rate (CAR), past vegetation composition and past methane (CH4) fluxes. We combined fossil plant data with measured contemporary CH4 flux - vegetation relationship data to reconstruct CH4 fluxes over time. When these reconstructions were added to the CAR estimations, a more complete picture of Holocene-scale C dynamics was achieved. Basal peat ages showed that expansion of the peat area was rapid between 11,000 and 8000 cal. BP, but decreased during the dry mid-Holocene and is probably currently limited by basal topography. A similar pattern was observed for peat growth and CAR in the fen core, whereas in the bog core CAR increased after ombrotrophication, i.e. after 4400 cal. BP. The effect of fire on vegetation and CAR was more conspicuous at the bog site than at the fen site. The CH4 flux reconstructions showed that during the Holocene CH4 emissions at the fen site decreased from 19 ± 15 to 16 ± 8 g CH4 m-2 yr-1 and at the bog site from 20 ± 15 to 14 ± 8 g CH4 m-2 yr-1. Our results suggest that a combination of changing climate, fire events and local conditions have modified the autogenic peatland development and C dynamics.

  19. Accuracy of mandibular force profiles for bite force estimation and feeding behavior reconstruction in extant and extinct carnivorans.

    PubMed

    Therrien, François; Quinney, Annie; Tanaka, Kohei; Zelenitsky, Darla K

    2016-12-01

    Mandibular force profiles apply the principles of beam theory to identify mandibular biomechanical properties that reflect the bite force and feeding strategies of extant and extinct predators. While this method uses the external dimensions of the mandibular corpus to determine its biomechanical properties, more accurate results could potentially be obtained by quantifying its internal cortical bone distribution. To test this possibility, mandibular force profiles were calculated using both external mandibular dimensions ('solid mandible model') and quantification of internal bone distribution of the mandibular corpus obtained from computed tomography scans ('hollow mandible model') for five carnivorans (Canis lupus, Crocuta crocuta, Panthera leo, Neofelis nebulosa and the extinct Canis dirus). Comparison reveals that the solid model slightly overestimates mandibular biomechanical properties, but the pattern of change in biomechanical properties along the mandible remains the same. As such, feeding behavior reconstructions are consistent between the two models and are not improved by computed tomography. Bite force estimates produced by the two models are similar, except in C. crocuta, where the solid model underestimates bite force by 10-14%. This discrepancy is due to the more solid nature of the C. crocuta mandible relative to other carnivorans. Therefore, computed tomography improves bite force estimation accuracy for taxa with thicker mandibular corpora, but not significantly so otherwise. Bite force estimates derived from mandibular force profiles are far closer to empirically measured bite force than those inferred from jaw musculature dimension. Consequently, bite force estimates derived from this method can be used to calibrate finite-element analysis models. © 2016. Published by The Company of Biologists Ltd.

  20. Low dose dynamic myocardial CT perfusion using advanced iterative reconstruction

    NASA Astrophysics Data System (ADS)

    Eck, Brendan L.; Fahmi, Rachid; Fuqua, Christopher; Vembar, Mani; Dhanantwari, Amar; Bezerra, Hiram G.; Wilson, David L.

    2015-03-01

    Dynamic myocardial CT perfusion (CTP) can provide quantitative functional information for the assessment of coronary artery disease. However, x-ray dose in dynamic CTP is high, typically from 10mSv to >20mSv. We compared the dose reduction potential of advanced iterative reconstruction, Iterative Model Reconstruction (IMR, Philips Healthcare, Cleveland, Ohio) to hybrid iterative reconstruction (iDose4) and filtered back projection (FBP). Dynamic CTP scans were obtained using a porcine model with balloon-induced ischemia in the left anterior descending coronary artery to prescribed fractional flow reserve values. High dose dynamic CTP scans were acquired at 100kVp/100mAs with effective dose of 23mSv. Low dose scans at 75mAs, 50mAs, and 25mAs were simulated by adding x-ray quantum noise and detector electronic noise to the projection space data. Images were reconstructed with FBP, iDose4, and IMR at each dose level. Image quality in static CTP images was assessed by SNR and CNR. Blood flow was obtained using a dynamic CTP analysis pipeline and blood flow image quality was assessed using flow-SNR and flow-CNR. IMR showed highest static image quality according to SNR and CNR. Blood flow in FBP was increasingly over-estimated at reduced dose. Flow was more consistent for iDose4 from 100mAs to 50mAs, but was over-estimated at 25mAs. IMR was most consistent from 100mAs to 25mAs. Static images and flow maps for 100mAs FBP, 50mAs iDose4, and 25mAs IMR showed comparable, clear ischemia, CNR, and flow-CNR values. These results suggest that IMR can enable dynamic CTP at significantly reduced dose, at 5.8mSv or 25% of the comparable 23mSv FBP protocol.

  1. Simultaneous reconstruction and segmentation for dynamic SPECT imaging

    NASA Astrophysics Data System (ADS)

    Burger, Martin; Rossmanith, Carolin; Zhang, Xiaoqun

    2016-10-01

    This work deals with the reconstruction of dynamic images that incorporate characteristic dynamics in certain subregions, as arising for the kinetics of many tracers in emission tomography (SPECT, PET). We make use of a basis function approach for the unknown tracer concentration by assuming that the region of interest can be divided into subregions with spatially constant concentration curves. Applying a regularised variational framework reminiscent of the Chan-Vese model for image segmentation we simultaneously reconstruct both the labelling functions of the subregions as well as the subconcentrations within each region. Our particular focus is on applications in SPECT with the Poisson noise model, resulting in a Kullback-Leibler data fidelity in the variational approach. We present a detailed analysis of the proposed variational model and prove existence of minimisers as well as error estimates. The latter apply to a more general class of problems and generalise existing results in literature since we deal with a nonlinear forward operator and a nonquadratic data fidelity. A computational algorithm based on alternating minimisation and splitting techniques is developed for the solution of the problem and tested on appropriately designed synthetic data sets. For those we compare the results to those of standard EM reconstructions and investigate the effects of Poisson noise in the data.

  2. Dynamical Modeling and Excitation Reconstruction as Fundamental of Earth Rotation Prediction

    NASA Astrophysics Data System (ADS)

    Zotov, L. V.

    2010-01-01

    Though pure mathematical approximations such as regression models and neural networks show good results in Earth rotation forecasting, dynamical modeling remains the only base for the physically meaningful prediction. That assumes the knowledge of cause-effect relationships and physical model of the rotating Earth. Excitation reconstruction from the observed Earth orientation parameters (EOP) is a crucial stage, needed for comparison with known causes, such as tidal forcing, atmospheric (AAM), oceanic (OAM) angular momentum changes, and uncovering unknown ones. We demonstrate different approaches, which can be used to avoid ill-conditionality and amplification of noises during the inversion. We present amplitude and phase studies of the model and reconstructed excitations of Chandler wobble. We found out, that modulation of Chandler excitation is synchronous with 18-yr tidal effects in the Earth's rotation rate changes. The results of the study can be used for excitation and EOP forecast. The key issues of the EOP prediction are discussed.

  3. Synchrony dynamics underlying effective connectivity reconstruction of neuronal circuits

    NASA Astrophysics Data System (ADS)

    Yu, Haitao; Guo, Xinmeng; Qin, Qing; Deng, Yun; Wang, Jiang; Liu, Jing; Cao, Yibin

    2017-04-01

    Reconstruction of effective connectivity between neurons is essential for neural systems with function-related significance, characterizing directionally causal influences among neurons. In this work, causal interactions between neurons in spinal dorsal root ganglion, activated by manual acupuncture at Zusanli acupoint of experimental rats, are estimated using Granger causality (GC) method. Different patterns of effective connectivity are obtained for different frequencies and types of acupuncture. Combined with synchrony analysis between neurons, we show a dependence of effective connection on the synchronization dynamics. Based on the experimental findings, a neuronal circuit model with synaptic connections is constructed. The variation of neuronal effective connectivity with respect to its structural connectivity and synchronization dynamics is further explored. Simulation results show that reciprocally causal interactions with statistically significant are formed between well-synchronized neurons. The effective connectivity may be not necessarily equivalent to synaptic connections, but rather depend on the synchrony relationship. Furthermore, transitions of effective interaction between neurons are observed following the synchronization transitions induced by conduction delay and synaptic conductance. These findings are helpful to further investigate the dynamical mechanisms underlying the reconstruction of effective connectivity of neuronal population.

  4. Reconstructing Interlaced High-Dynamic-Range Video Using Joint Learning.

    PubMed

    Choi, Inchang; Baek, Seung-Hwan; Kim, Min H

    2017-11-01

    For extending the dynamic range of video, it is a common practice to capture multiple frames sequentially with different exposures and combine them to extend the dynamic range of each video frame. However, this approach results in typical ghosting artifacts due to fast and complex motion in nature. As an alternative, video imaging with interlaced exposures has been introduced to extend the dynamic range. However, the interlaced approach has been hindered by jaggy artifacts and sensor noise, leading to concerns over image quality. In this paper, we propose a data-driven approach for jointly solving two specific problems of deinterlacing and denoising that arise in interlaced video imaging with different exposures. First, we solve the deinterlacing problem using joint dictionary learning via sparse coding. Since partial information of detail in differently exposed rows is often available via interlacing, we make use of the information to reconstruct details of the extended dynamic range from the interlaced video input. Second, we jointly solve the denoising problem by tailoring sparse coding to better handle additive noise in low-/high-exposure rows, and also adopt multiscale homography flow to temporal sequences for denoising. We anticipate that the proposed method will allow for concurrent capture of higher dynamic range video frames without suffering from ghosting artifacts. We demonstrate the advantages of our interlaced video imaging compared with the state-of-the-art high-dynamic-range video methods.

  5. Effective reconstruction of dynamics of medium response spectrum

    NASA Astrophysics Data System (ADS)

    Trofimov, Vyacheslav A.; Varentsova, Svetlana A.

    2008-10-01

    A new algorithm is suggested to visualize the dynamics of medium response spectrum in terahertz diapason by the singly measured set of partially intersected integral characteristics of the signal. The algorithm is based on SVD method and window sliding method. The analysis, we carried out, demonstrates many advantages of the new algorithm in com-parison with the Gabor-Fourier approach, which allows obtaining the dynamics of only one spectral line for one set of measurements. Among which it is necessary to mention the possibility to get the dynamics of many spectral components simultaneously for one set of measurements as well and therefore to get the complete information about the spectrum dynamics. This allows to identify specific materials with known spectral lines and to distinguish materials with similar spectra, which is of great importance for the detection and identification of different chemicals, pharmaceutical substances and explosives. To demonstrate the efficiency of a proposed algorithm, we compare spectrum dynamics of chocolate and soap, which possess the similar spectra. Our investigation shows that their dynamics widely vary in spec-tral lines. The proposed algorithm can be also applied to voice identification and to reconstruction of a laser beam profile with a great number of local maxima. Developed algorithm allows to measure the characteristic time of medium responce. It is very important for various problems of spectroscopy.

  6. Dynamic force patterns of an undulatory microswimmer.

    PubMed

    Schulman, Rafael D; Backholm, Matilda; Ryu, William S; Dalnoki-Veress, Kari

    2014-05-01

    We probe the viscous forces involved in the undulatory swimming of the model organism C. elegans. Using micropipette deflection, we attain direct measurements of lateral and propulsive forces produced in response to the motion of the worm. We observe excellent agreement of the results with resistive force theory, through which we determine the drag coefficients of this organism. The drag coefficients are in accordance with theoretical predictions. Using a simple scaling argument, we obtain a relationship between the size of the worm and the forces that we measure, which well describes our data.

  7. Dynamic force patterns of an undulatory microswimmer

    NASA Astrophysics Data System (ADS)

    Schulman, Rafael D.; Backholm, Matilda; Ryu, William S.; Dalnoki-Veress, Kari

    2014-05-01

    We probe the viscous forces involved in the undulatory swimming of the model organism C. elegans. Using micropipette deflection, we attain direct measurements of lateral and propulsive forces produced in response to the motion of the worm. We observe excellent agreement of the results with resistive force theory, through which we determine the drag coefficients of this organism. The drag coefficients are in accordance with theoretical predictions. Using a simple scaling argument, we obtain a relationship between the size of the worm and the forces that we measure, which well describes our data.

  8. Experiments of reconstructing discrete atmospheric dynamic models from data (I)

    NASA Astrophysics Data System (ADS)

    Lin, Zhenshan; Zhu, Yanyu; Deng, Ziwang

    1995-03-01

    In this paper, we give some experimental results of our study in reconstructing discrete atmospheric dynamic models from data. After a great deal of numerical experiments, we found that the logistic map, x n + 1 = 1- μx {2/n}, could be used in monthly mean temperature prediction when it was approaching the chaotic region, and its predictive results were in reverse states to the practical data. This means that the nonlinear developing behavior of the monthly mean temperature system is bifurcating back into the critical chaotic states from the chaotic ones.

  9. Static and dynamical Meissner force fields

    NASA Technical Reports Server (NTRS)

    Weinberger, B. R.; Lynds, L.; Hull, J. R.; Mulcahy, T. M.

    1991-01-01

    The coupling between copper-based high temperature superconductors (HTS) and magnets is represented by a force field. Zero-field cooled experiments were performed with several forms of superconductors: 1) cold-pressed sintered cylindrical disks; 2) small particles fixed in epoxy polymers; and 3) small particles suspended in hydrocarbon waxes. Using magnets with axial field symmetries, direct spatial force measurements in the range of 0.1 to 10(exp 4) dynes were performed with an analytical balance and force constants were obtained from mechanical vibrational resonances. Force constants increase dramatically with decreasing spatial displacement. The force field displays a strong temperature dependence between 20 and 90 K and decreases exponentially with increasing distance of separation. Distinct slope changes suggest the presence of B-field and temperature-activated processes that define the forces. Hysteresis measurements indicated that the magnitude of force scales roughly with the volume fraction of HTS in composite structures. Thus, the net force resulting from the field interaction appears to arise from regions as small or smaller than the grain size and does not depend on contiguous electron transport over large areas. Results of these experiments are discussed.

  10. Drag forces on inclusions in classical fields with dissipative dynamics.

    PubMed

    Démery, V; Dean, D S

    2010-08-01

    We study the drag force on uniformly moving inclusions which interact linearly with dynamical free field theories commonly used to study soft condensed matter systems. Drag forces are shown to be nonlinear functions of the inclusion velocity and depend strongly on the field dynamics. The general results obtained can be used to explain drag forces in Ising systems and also predict the existence of drag forces on proteins in membranes due to couplings to various physical parameters of the membrane such as composition, phase and height fluctuations.

  11. Force fields for classical molecular dynamics.

    PubMed

    Monticelli, Luca; Tieleman, D Peter

    2013-01-01

    In this chapter we review the basic features and the principles underlying molecular mechanics force fields commonly used in molecular modeling of biological macromolecules. We start by summarizing the historical background and then describe classical pairwise additive potential energy functions. We introduce the problem of the calculation of nonbonded interactions, of particular importance for charged macromolecules. Different parameterization philosophies are then presented, followed by a section on force field validation. We conclude with a brief overview on future perspectives for the development of classical force fields.

  12. Bifurcation, chaos, and scan instability in dynamic atomic force microscopy

    SciTech Connect

    Cantrell, John H.; Cantrell, Sean A.

    2016-03-28

    The dynamical motion at any point on the cantilever of an atomic force microscope can be expressed quite generally as a superposition of simple harmonic oscillators corresponding to the vibrational modes allowed by the cantilever shape. Central to the dynamical equations is the representation of the cantilever-sample interaction force as a polynomial expansion with coefficients that account for the interaction force “stiffness,” the cantilever-to-sample energy transfer, and the displacement amplitude of cantilever oscillation. Renormalization of the cantilever beam model shows that for a given cantilever drive frequency cantilever dynamics can be accurately represented by a single nonlinear mass-spring model with frequency-dependent stiffness and damping coefficients [S. A. Cantrell and J. H. Cantrell, J. Appl. Phys. 110, 094314 (2011)]. Application of the Melnikov method to the renormalized dynamical equation is shown to predict a cascade of period doubling bifurcations with increasing cantilever drive force that terminates in chaos. The threshold value of the drive force necessary to initiate bifurcation is shown to depend strongly on the cantilever setpoint and drive frequency, effective damping coefficient, nonlinearity of the cantilever-sample interaction force, and the displacement amplitude of cantilever oscillation. The model predicts the experimentally observed interruptions of the bifurcation cascade for cantilevers of sufficiently large stiffness. Operational factors leading to the loss of image quality in dynamic atomic force microscopy are addressed, and guidelines for optimizing scan stability are proposed using a quantitative analysis based on system dynamical parameters and choice of feedback loop parameter.

  13. Corticomuscular synchronization with small and large dynamic force output.

    PubMed

    Andrykiewicz, Agnieszka; Patino, Luis; Naranjo, Jose Raul; Witte, Matthias; Hepp-Reymond, Marie-Claude; Kristeva, Rumyana

    2007-11-27

    Over the last few years much research has been devoted to investigating the synchronization between cortical motor and muscular activity as measured by EEG/MEG-EMG coherence. The main focus so far has been on corticomuscular coherence (CMC) during static force condition, for which coherence in beta-range has been described. In contrast, we showed in a recent study 1 that dynamic force condition is accompanied by gamma-range CMC. The modulation of the CMC by various dynamic force amplitudes, however, remained uninvestigated. The present study addresses this question. We examined eight healthy human subjects. EEG and surface EMG were recorded simultaneously. The visuomotor task consisted in isometric compensation for 3 forces (static, small and large dynamic) generated by a manipulandum. The CMC, the cortical EEG spectral power (SP), the EMG SP and the errors in motor performance (as the difference between target and exerted force) were analyzed. For the static force condition we found the well-documented, significant beta-range CMC (15-30 Hz) over the contralateral sensorimotor cortex. Gamma-band CMC (30-45 Hz) occurred in both small and large dynamic force conditions without any significant difference between both conditions. Although in some subjects beta-range CMC was observed during both dynamic force conditions no significant difference between conditions could be detected. With respect to the motor performance, the lowest errors were obtained in the static force condition and the highest ones in the dynamic condition with large amplitude. However, when we normalized the magnitude of the errors to the amplitude of the applied force (relative errors) no significant difference between both dynamic conditions was observed. These findings confirm that during dynamic force output the corticomuscular network oscillates at gamma frequencies. Moreover, we show that amplitude modulation of dynamic force has no effect on the gamma CMC in the low force range investigated

  14. Corticomuscular synchronization with small and large dynamic force output

    PubMed Central

    Andrykiewicz, Agnieszka; Patino, Luis; Naranjo, Jose Raul; Witte, Matthias; Hepp-Reymond, Marie-Claude; Kristeva, Rumyana

    2007-01-01

    Background Over the last few years much research has been devoted to investigating the synchronization between cortical motor and muscular activity as measured by EEG/MEG-EMG coherence. The main focus so far has been on corticomuscular coherence (CMC) during static force condition, for which coherence in beta-range has been described. In contrast, we showed in a recent study [1] that dynamic force condition is accompanied by gamma-range CMC. The modulation of the CMC by various dynamic force amplitudes, however, remained uninvestigated. The present study addresses this question. We examined eight healthy human subjects. EEG and surface EMG were recorded simultaneously. The visuomotor task consisted in isometric compensation for 3 forces (static, small and large dynamic) generated by a manipulandum. The CMC, the cortical EEG spectral power (SP), the EMG SP and the errors in motor performance (as the difference between target and exerted force) were analyzed. Results For the static force condition we found the well-documented, significant beta-range CMC (15–30 Hz) over the contralateral sensorimotor cortex. Gamma-band CMC (30–45 Hz) occurred in both small and large dynamic force conditions without any significant difference between both conditions. Although in some subjects beta-range CMC was observed during both dynamic force conditions no significant difference between conditions could be detected. With respect to the motor performance, the lowest errors were obtained in the static force condition and the highest ones in the dynamic condition with large amplitude. However, when we normalized the magnitude of the errors to the amplitude of the applied force (relative errors) no significant difference between both dynamic conditions was observed. Conclusion These findings confirm that during dynamic force output the corticomuscular network oscillates at gamma frequencies. Moreover, we show that amplitude modulation of dynamic force has no effect on the gamma CMC

  15. Force reconstruction using the sum of weighted accelerations technique -- Max-Flat procedure

    SciTech Connect

    Carne, T.G.; Mayes, R.L.; Bateman, V.I.

    1993-12-31

    Force reconstruction is a procedure in which the externally applied force is inferred from measured structural response rather than directly measured. In a recently developed technique, the response acceleration time-histories are multiplied by scalar weights and summed to produce the reconstructed force. This reconstruction is called the Sum of Weighted Accelerations Technique (SWAT). One step in the application of this technique is the calculation of the appropriate scalar weights. In this paper a new method of estimating the weights, using measured frequency response function data, is developed and contrasted with the traditional SWAT method of inverting the mode-shape matrix. The technique uses frequency response function data, but is not based on deconvolution. An application that will be discussed as part of this paper is the impact into a rigid barrier of a weapon system with an energy-absorbing nose. The nose had been designed to absorb the energy of impact and to mitigate the shock to the interior components.

  16. Dynamic Forces in Spur Gears - Measurement, Prediction, and Code Validation

    NASA Technical Reports Server (NTRS)

    Oswald, Fred B.; Townsend, Dennis P.; Rebbechi, Brian; Lin, Hsiang Hsi

    1996-01-01

    Measured and computed values for dynamic loads in spur gears were compared to validate a new version of the NASA gear dynamics code DANST-PC. Strain gage data from six gear sets with different tooth profiles were processed to determine the dynamic forces acting between the gear teeth. Results demonstrate that the analysis code successfully simulates the dynamic behavior of the gears. Differences between analysis and experiment were less than 10 percent under most conditions.

  17. Traceable dynamic calibration of force transducers by primary means

    NASA Astrophysics Data System (ADS)

    Vlajic, Nicholas; Chijioke, Ako

    2016-08-01

    We describe an apparatus for traceable, dynamic calibration of force transducers using harmonic excitation, and report calibration measurements of force transducers using this apparatus. In this system, the force applied to the transducer is produced by the acceleration of an attached mass, and is determined according to Newton’s second law, F  =  ma. The acceleration is measured by primary means, using laser interferometry. The capabilities of this system are demonstrated by performing dynamic calibrations of two shear-web-type force transducers up to a frequency of 2 kHz, with an expanded uncertainty below 1.2%. We give an account of all significant sources of uncertainty, including a detailed consideration of the effects of dynamic tilting (rocking), which is a leading source of uncertainty in such harmonic force calibration systems.

  18. Reconstructing the micrometeorological dynamics of the southern Amazonian transitional forest

    NASA Astrophysics Data System (ADS)

    de Paulo, Sergio Roberto; de Paulo, Iramaia Jorge Cabral; De Decker, Yannick

    2015-12-01

    In this work, we reconstruct and analyze the micrometeorological dynamics of the transitional forest located south of the Amazon basin. For this, we use time series of micrometeorological variables collected over five years in the transitional forest of Mato Grosso (Brazil). We employ local feature analysis, a recently proposed extension of principal component analysis, to extract the most relevant physical variables from this set. We show in this way that temperature records contain most of the dynamical information in all seasons. Based on this result, the dimensionality of the space spanned by the system's dynamics and the properties of the so defined attractors are obtained. In the dry season, the system presents a robust oscillatory character described by a well-defined limit cycle. In the wet season, the dynamics becomes more irregular but can still be seen as a periodic behavior affected by external noise. These results can help to develop accurate models for the meteorology of the Amazonian transitional forest and can thus lead to a better understanding of this important ecosystem.

  19. Dynamic Data-Driven Event Reconstruction for Atmospheric Releases

    SciTech Connect

    Kosovic, B; Belles, R; Chow, F K; Monache, L D; Dyer, K; Glascoe, L; Hanley, W; Johannesson, G; Larsen, S; Loosmore, G; Lundquist, J K; Mirin, A; Neuman, S; Nitao, J; Serban, R; Sugiyama, G; Aines, R

    2007-02-22

    Accidental or terrorist releases of hazardous materials into the atmosphere can impact large populations and cause significant loss of life or property damage. Plume predictions have been shown to be extremely valuable in guiding an effective and timely response. The two greatest sources of uncertainty in the prediction of the consequences of hazardous atmospheric releases result from poorly characterized source terms and lack of knowledge about the state of the atmosphere as reflected in the available meteorological data. In this report, we discuss the development of a new event reconstruction methodology that provides probabilistic source term estimates from field measurement data for both accidental and clandestine releases. Accurate plume dispersion prediction requires the following questions to be answered: What was released? When was it released? How much material was released? Where was it released? We have developed a dynamic data-driven event reconstruction capability which couples data and predictive models through Bayesian inference to obtain a solution to this inverse problem. The solution consists of a probability distribution of unknown source term parameters. For consequence assessment, we then use this probability distribution to construct a ''''composite'' forward plume prediction which accounts for the uncertainties in the source term. Since in most cases of practical significance it is impossible to find a closed form solution, Bayesian inference is accomplished by utilizing stochastic sampling methods. This approach takes into consideration both measurement and forward model errors and thus incorporates all the sources of uncertainty in the solution to the inverse problem. Stochastic sampling methods have the additional advantage of being suitable for problems characterized by a non-Gaussian distribution of source term parameters and for cases in which the underlying dynamical system is non-linear. We initially developed a Markov Chain Monte

  20. Cranial myology and bite force performance of Erlikosaurus andrewsi: a novel approach for digital muscle reconstructions

    PubMed Central

    Lautenschlager, Stephan

    2013-01-01

    The estimation of bite force and bite performance in fossil and extinct animals is a challenging subject in palaeontology and is highly dependent on the reconstruction of the cranial myology. Furthermore, the morphology and arrangement of the adductor muscles considerably affect feeding processes and mastication and thus also have important dietary and ecological ramifications. However, in the past, the reconstruction of the (cranial) muscles was restricted to the identification of muscle attachment sites or simplified computer models. This study presents a detailed reconstruction of the adductor musculature of the Cretaceous therizinosaur Erlikosaurus andrewsi based on a stepwise and iterative approach. The detailed, three-dimensional models of the individual muscles allow for more accurate measurements of the muscle properties (length, cross-section, attachment angle and volume), from which muscle and bite force estimates are calculated. Bite force estimations are found to be the lowest at the tip of the snout (43–65 N) and respectively higher at the first (59–88 N) and last tooth (90–134 N) position. Nevertheless, bite forces are comparatively low for E. andrewsi, both in actual numbers as well as in comparison with other theropod dinosaurs. The results further indicate that the low bite performance was mainly used for leaf-stripping and plant cropping, rather than active mastication or chewing processes. Muscle and thus bite force in E. andrewsi (and most likely all therizinosaurs) is considerably constrained by the cranial anatomy and declines in derived taxa of this clade. This trend is reflected in the changes of dietary preferences from carnivory to herbivory in therizinosaurs. PMID:23061752

  1. Forcing function diagnostics for nonlinear dynamics.

    PubMed

    Hooker, Giles

    2009-09-01

    This article investigates the problem of model diagnostics for systems described by nonlinear ordinary differential equations (ODEs). I propose modeling lack of fit as a time-varying correction to the right-hand side of a proposed differential equation. This correction can be described as being a set of additive forcing functions, estimated from data. Representing lack of fit in this manner allows us to graphically investigate model inadequacies and to suggest model improvements. I derive lack-of-fit tests based on estimated forcing functions. Model building in partially observed systems of ODEs is particularly difficult and I consider the problem of identification of forcing functions in these systems. The methods are illustrated with examples from computational neuroscience.

  2. Dynamic scanned-probe lateral-force determination

    NASA Astrophysics Data System (ADS)

    Wetsel, G. C., Jr.; Drummond Roby, M. A.

    1995-10-01

    A continuum-mechanical model of the dynamics of a scanned probe is described that includes intrinsic losses as well as the effect of a lateral force on the end of the probe. A method for the determination of calibrated lateral force is experimentally evaluated and the sensitivity of the method is analyzed.

  3. Stable dynamics in forced systems with sufficiently high/low forcing frequency.

    PubMed

    Bartuccelli, M; Gentile, G; Wright, J A

    2016-08-01

    We consider parametrically forced Hamiltonian systems with one-and-a-half degrees of freedom and study the stability of the dynamics when the frequency of the forcing is relatively high or low. We show that, provided the frequency is sufficiently high, Kolmogorov-Arnold-Moser (KAM) theorem may be applied even when the forcing amplitude is far away from the perturbation regime. A similar result is obtained for sufficiently low frequency, but in that case we need the amplitude of the forcing to be not too large; however, we are still able to consider amplitudes which are outside of the perturbation regime. In addition, we find numerically that the dynamics may be stable even when the forcing amplitude is very large, well beyond the range of validity of the analytical results, provided the frequency of the forcing is taken correspondingly low.

  4. Dynamic Force Patterns of an Undulatory Microswimmer

    NASA Astrophysics Data System (ADS)

    Schulman, Rafael; Backholm, Matilda; Ryu, William; Dalnoki-Veress, Kari

    2014-03-01

    C. elegans is a millimeter-sized nematode which has served as a model organism in biology for several decades, primarily due to its simple anatomy. Using an undulatory form of locomotion, this worm is capable of propelling itself through various media. Due to the small length scales involved, swimming in this regime is qualitatively different from macroscopic locomotion because the swimmers can be considered to have no inertia. In order to understand the microswimming that this worm exhibits, it is crucial to determine the viscous forces experienced during its motion. Using a micropipette deflection technique in conjunction with high speed imaging, we have directly measured the time-varying forces generated by C. elegans during swimming. Furthermore, by analyzing the body's kinematics over time and applying a model of locomotion, we can compute the theoretical force curves. We observe excellent agreement between the measured and calculated forces. The success of this simple model has important implications in the understanding of microswimming in general.

  5. Application of DIRI dynamic infrared imaging in reconstructive surgery

    NASA Astrophysics Data System (ADS)

    Pawlowski, Marek; Wang, Chengpu; Jin, Feng; Salvitti, Matthew; Tenorio, Xavier

    2006-04-01

    We have developed the BioScanIR System based on QWIP (Quantum Well Infrared Photodetector). Data collected by this sensor are processed using the DIRI (Dynamic Infrared Imaging) algorithms. The combination of DIRI data processing methods with the unique characteristics of the QWIP sensor permit the creation of a new imaging modality capable of detecting minute changes in temperature at the surface of the tissue and organs associated with blood perfusion due to certain diseases such as cancer, vascular disease and diabetes. The BioScanIR System has been successfully applied in reconstructive surgery to localize donor flap feeding vessels (perforators) during the pre-surgical planning stage. The device is also used in post-surgical monitoring of skin flap perfusion. Since the BioScanIR is mobile; it can be moved to the bedside for such monitoring. In comparison to other modalities, the BioScanIR can localize perforators in a single, 20 seconds scan with definitive results available in minutes. The algorithms used include (FFT) Fast Fourier Transformation, motion artifact correction, spectral analysis and thermal image scaling. The BioScanIR is completely non-invasive and non-toxic, requires no exogenous contrast agents and is free of ionizing radiation. In addition to reconstructive surgery applications, the BioScanIR has shown promise as a useful functional imaging modality in neurosurgery, drug discovery in pre-clinical animal models, wound healing and peripheral vascular disease management.

  6. Reconstruction of missing daily streamflow data using dynamic regression models

    NASA Astrophysics Data System (ADS)

    Tencaliec, Patricia; Favre, Anne-Catherine; Prieur, Clémentine; Mathevet, Thibault

    2015-12-01

    River discharge is one of the most important quantities in hydrology. It provides fundamental records for water resources management and climate change monitoring. Even very short data-gaps in this information can cause extremely different analysis outputs. Therefore, reconstructing missing data of incomplete data sets is an important step regarding the performance of the environmental models, engineering, and research applications, thus it presents a great challenge. The objective of this paper is to introduce an effective technique for reconstructing missing daily discharge data when one has access to only daily streamflow data. The proposed procedure uses a combination of regression and autoregressive integrated moving average models (ARIMA) called dynamic regression model. This model uses the linear relationship between neighbor and correlated stations and then adjusts the residual term by fitting an ARIMA structure. Application of the model to eight daily streamflow data for the Durance river watershed showed that the model yields reliable estimates for the missing data in the time series. Simulation studies were also conducted to evaluate the performance of the procedure.

  7. Force distribution in a granular medium under dynamic loading

    NASA Astrophysics Data System (ADS)

    Danylenko, Vyacheslav A.; Mykulyak, Sergiy V.; Polyakovskyi, Volodymyr O.; Kulich, Vasyl V.; Oleynik, Ivan I.

    2017-07-01

    Force distribution in a granular medium subjected to an impulse loading is investigated in experiment and computer simulations. An experimental technique is developed to measure forces acting on individual grains at the bottom of the granular sample consisting of steel balls. Discrete element method simulation also is performed under conditions mimicking those in experiment. Both theory and experiment display exponentially decaying maximum force distributions at the bottom of the sample in the range of large forces. In addition, the simulations also reveal exponential force distribution throughout the sample and uncover correlation properties of the interparticle forces during dynamic loading of the granular samples. Simulated time dependence of coordination number, orientational order parameter, correlation radius, and force distribution clearly demonstrates the nonequilibrium character of the deformation process in a granular medium under impulse loading.

  8. Liquid contact resonance atomic force microscopy via experimental reconstruction of the hydrodynamic function

    SciTech Connect

    Tung, Ryan C. Killgore, Jason P.; Hurley, Donna C.

    2014-06-14

    We present a method to correct for surface-coupled inertial and viscous fluid loading forces in contact resonance (CR) atomic force microscopy (AFM) experiments performed in liquid. Based on analytical hydrodynamic theory, the method relies on experimental measurements of the AFM cantilever's free resonance peaks near the sample surface. The free resonance frequencies and quality factors in both air and liquid allow reconstruction of a continuous hydrodynamic function that can be used to adjust the CR data in liquid. Validation experiments utilizing thermally excited free and in-contact spectra were performed to assess the accuracy of our approach. Results show that the method recovers the air frequency values within approximately 6%. Knowledge of fluid loading forces allows current CR analysis techniques formulated for use in air and vacuum environments to be applied to liquid environments. Our technique greatly extends the range of measurement environments available to CR-AFM.

  9. Dynamics of DNA polymerase I (Klenow fragment) under external force.

    PubMed

    Xie, Ping

    2013-03-01

    During DNA synthesis, high-fidelity DNA polymerase (DNAP) translocates processively along the template by utilizing the chemical energy from nucleotide incorporation. Thus, understanding the chemomechanical coupling mechanism and the effect of external mechanical force on replication velocity are the most fundamental issues for high-fidelity DNAP. Here, based on our proposed model, we take Klenow fragment as an example to study theoretically the dynamics of high-fidelity DNAPs such as the replication velocity versus different types of external force, i.e., a stretching force on the template, a backward force on the enzyme and a forward force on the enzyme. Replication velocity as a function of the template tension with only one adjustable parameter is in good agreement with the available experimental data. The replication velocity is nearly independent of the forward force, even at very low dNTP concentration. By contrast, the backward force has a large effect on the replication velocity, especially at high dNTP concentration. A small backward force can increase the replication velocity and an optimal backward force exists at which the replication velocity has maximum value; with any further increase in the backward force the velocity decreases rapidly. These results can be tested easily by future experiments and are aid our understanding of the chemomechanical coupling mechanism and polymerization dynamics of high-fidelity DNAP.

  10. Generalized force model of traffic dynamics

    NASA Astrophysics Data System (ADS)

    Helbing, Dirk; Tilch, Benno

    1998-07-01

    Floating car data of car-following behavior in cities were compared to existing microsimulation models, after their parameters had been calibrated to the experimental data. With these parameter values, additional simulations have been carried out, e.g., of a moving car which approaches a stopped car. It turned out that, in order to manage such kinds of situations without producing accidents, improved traffic models are needed. Good results were obtained with the proposed generalized force model.

  11. Solar prominences: formation, force balance, internal dynamics

    NASA Astrophysics Data System (ADS)

    Keppens, R.; Xia, C.; Chen, P.; Blokland, J. W. S.

    2013-01-01

    Prominences represent fascinating large-scale, cool and dense structures, suspended in the hot and tenuous solar corona above magnetic neutral lines. Starting from magnetohydrostatic force balance arguments, their differing magnetic topology distinguishes Kippenhahn-Schlüter (1957) versus Kuperus-Raadu (1974) types. In both, the concave-upward parts of magnetic field lines or ‘dips’ host and support prominence material via the magnetic tension force against gravity. We highlight recent insights into prominence physics, where we start from modern magnetohydrodynamic equilibrium computations, allowing to mimic flux-rope embedded multi-layer prominence configurations of Kuperus-Raadu type. These can be analysed for linear stability, and by quantifying the eigenfrequencies of flux-surface localized modes, charting out the continuous parts of the MHD spectrum, we pave the way for more detailed prominence seismology. Perhaps the most elusive aspect of prominence physics is their sudden formation, and we demonstrate recent achievements in both rigid field, and fully multi-dimensional simulation efforts. The link with the thermal instability of optically thin radiative plasmas is clarified, and we show the first evaporation-condensation model study where we can demonstrate how the formed prominence stays in a force balanced state, which can be compared to the original Kippenhahn-Schlüter type magnetohydrostatic model.

  12. Effects of nonlinear forces on dynamic mode atomic force microscopy and spectroscopy.

    PubMed

    Das, Soma; Sreeram, P A; Raychaudhuri, A K

    2007-06-01

    In this paper, we describe the effects of nonlinear tip-sample forces on dynamic mode atomic force microscopy and spectroscopy. The jumps and hysteresis observed in the vibration amplitude (A) versus tip-sample distance (h) curves have been traced to bistability in the resonance curve. A numerical analysis of the basic dynamic equation was used to explain the hysteresis in the experimental curve. It has been found that the location of the hysteresis in the A-h curve depends on the frequency of the forced oscillation relative to the natural frequency of the cantilever.

  13. Tibiofemoral Contact Forces in the Anterior Cruciate Ligament-Reconstructed Knee.

    PubMed

    Saxby, David John; Bryant, Adam L; Modenese, Luca; Gerus, Pauline; Killen, Bryce A; Konrath, Jason; Fortin, Karine; Wrigley, Tim V; Bennell, Kim L; Cicuttini, Flavia M; Vertullo, Christopher; Feller, Julian A; Whitehead, Tim; Gallie, Price; Lloyd, David G

    2016-11-01

    To investigate differences in anterior cruciate ligament-reconstructed (ACLR) and healthy individuals in terms of the magnitude of the tibiofemoral contact forces, as well as the relative muscle and external load contributions to those contact forces, during walking, running, and sidestepping gait tasks. A computational EMG-driven neuromusculoskeletal model was used to estimate the muscle and tibiofemoral contact forces in those with single-bundle combined semitendinosus and gracilis tendon autograft ACLR (n = 104, 29.7 ± 6.5 yr, 78.1 ± 14.4 kg) and healthy controls (n = 60, 27.5 ± 5.4 yr, 67.8 ± 14.0 kg) during walking (1.4 ± 0.2 m·s), running (4.5 ± 0.5 m·s) and sidestepping (3.7 ± 0.6 m·s). Within the computational model, the semitendinosus of ACLR participants was adjusted to account for literature reported strength deficits and morphological changes subsequent to autograft harvesting. ACLR had smaller maximum total and medial tibiofemoral contact forces (~80% of control values, scaled to bodyweight) during the different gait tasks. Compared with controls, ACLR were found to have a smaller maximum knee flexion moment, which explained the smaller tibiofemoral contact forces. Similarly, compared with controls, ACLR had both a smaller maximum knee flexion angle and knee flexion excursion during running and sidestepping, which may have concentrated the articular contact forces to smaller areas within the tibiofemoral joint. Mean relative muscle and external load contributions to the tibiofemoral contact forces were not significantly different between ACLR and controls. ACLR had lower bodyweight-scaled tibiofemoral contact forces during walking, running, and sidestepping, likely due to lower knee flexion moments and straighter knee during the different gait tasks. The relative contributions of muscles and external loads to the contact forces were equivalent between groups.

  14. A comparison of reconstruction methods for undersampled atomic force microscopy images.

    PubMed

    Luo, Yufan; Andersson, Sean B

    2015-12-18

    Non-raster scanning and undersampling of atomic force microscopy (AFM) images is a technique for improving imaging rate and reducing the amount of tip-sample interaction needed to produce an image. Generation of the final image can be done using a variety of image processing techniques based on interpolation or optimization. The choice of reconstruction method has a large impact on the quality of the recovered image and the proper choice depends on the sample under study. In this work we compare interpolation through the use of inpainting algorithms with reconstruction based on optimization through the use of the basis pursuit algorithm commonly used for signal recovery in compressive sensing. Using four different sampling patterns found in non-raster AFM, namely row subsampling, spiral scanning, Lissajous scanning, and random scanning, we subsample data from existing images and compare reconstruction performance against the original image. The results illustrate that inpainting generally produces superior results when the image contains primarily low frequency content while basis pursuit is better when the images have mixed, but sparse, frequency content. Using support vector machines, we then classify images based on their frequency content and sparsity and, from this classification, develop a fast decision strategy to select a reconstruction algorithm to be used on subsampled data. The performance of the classification and decision test are demonstrated on test AFM images.

  15. A comparison of reconstruction methods for undersampled atomic force microscopy images

    NASA Astrophysics Data System (ADS)

    Luo, Yufan; Andersson, Sean B.

    2015-12-01

    Non-raster scanning and undersampling of atomic force microscopy (AFM) images is a technique for improving imaging rate and reducing the amount of tip-sample interaction needed to produce an image. Generation of the final image can be done using a variety of image processing techniques based on interpolation or optimization. The choice of reconstruction method has a large impact on the quality of the recovered image and the proper choice depends on the sample under study. In this work we compare interpolation through the use of inpainting algorithms with reconstruction based on optimization through the use of the basis pursuit algorithm commonly used for signal recovery in compressive sensing. Using four different sampling patterns found in non-raster AFM, namely row subsampling, spiral scanning, Lissajous scanning, and random scanning, we subsample data from existing images and compare reconstruction performance against the original image. The results illustrate that inpainting generally produces superior results when the image contains primarily low frequency content while basis pursuit is better when the images have mixed, but sparse, frequency content. Using support vector machines, we then classify images based on their frequency content and sparsity and, from this classification, develop a fast decision strategy to select a reconstruction algorithm to be used on subsampled data. The performance of the classification and decision test are demonstrated on test AFM images.

  16. The Dynamics of Coughing and Forced Expiration,

    DTIC Science & Technology

    The study analyzes the factors which make coughing an effective mechanism to expel noxious agents and mucus secreted as a response to these agents...research is based on studies done on human subjects and on computer simulation, both lines of research progressing simultaneously. Dynamics of coughing

  17. Molecular Mechanotransduction: how forces trigger cytoskeletal dynamics

    NASA Astrophysics Data System (ADS)

    Ehrlicher, Allen

    2012-02-01

    Mechanical stresses elicit cellular reactions mediated by chemical signals. Defective responses to forces underlie human medical disorders, such as cardiac failure and pulmonary injury. Despite detailed knowledge of the cytoskeleton's structure, the specific molecular switches that convert mechanical stimuli into chemical signals have remained elusive. Here we identify the actin-binding protein, filamin A (FLNa) as a central mechanotransduction element of the cytoskeleton by using Fluorescence Loss After photoConversion (FLAC), a novel high-speed alternative to FRAP. We reconstituted a minimal system consisting of actin filaments, FLNa and two FLNa-binding partners: the cytoplasmic tail of ß-integrin, and FilGAP. Integrins form an essential mechanical linkage between extracellular and intracellular environments, with ß integrin tails connecting to the actin cytoskeleton by binding directly to filamin. FilGAP is a FLNa-binding GTPase-activating protein specific for Rac, which in vivo regulates cell spreading and bleb formation. We demonstrate that both externally-imposed bulk shear and myosin II driven forces differentially regulate the binding of integrin and FilGAP to FLNa. Consistent with structural predictions, strain increases ß-integrin binding to FLNa, whereas it causes FilGAP to dissociate from FLNa, providing a direct and specific molecular basis for cellular mechanotransduction. These results identify the first molecular mechanotransduction element within the actin cytoskeleton, revealing that mechanical strain of key proteins regulates the binding of signaling molecules. Moreover, GAP activity has been shown to switch cell movement from mesenchymal to amoeboid motility, suggesting that mechanical forces directly impact the invasiveness of cancer.

  18. Dynamics of thermal Casimir-Polder forces on polar molecules

    SciTech Connect

    Ellingsen, Simen Aadnoey; Buhmann, Stefan Yoshi; Scheel, Stefan

    2009-05-15

    We study the influence of thermal Casimir-Polder forces on the near-surface trapping of cold polar molecules, with emphasis on LiH and YbF near a Au surface at room temperature. We show that even for a molecule initially prepared in its electronic and rovibrational ground state, the Casimir-Polder force oscillates with the molecule-wall separation. The nonresonant force and the evanescent part of the resonant force almost exactly cancel at high temperature which results in a saturation of the (attractive) force in this limit. This implies that the Casimir-Polder force on a fully thermalized molecule can differ dramatically from that obtained using a naive perturbative expansion of the Lifshitz formula based on the molecular ground-state polarizability. A dynamical calculation reveals how the spatial oscillations die out on a typical time scale of several seconds as thermalization of the molecule with its environment sets in.

  19. Supersonic Flight Dynamics Test 2: Trajectory, Atmosphere, and Aerodynamics Reconstruction

    NASA Technical Reports Server (NTRS)

    Karlgaard, Christopher D.; O'Farrell, Clara; Ginn, Jason M.; Van Norman, John W.

    2016-01-01

    The Supersonic Flight Dynamics Test is a full-scale flight test of aerodynamic decelerator technologies developed by the Low Density Supersonic Decelerator technology demonstration project. The purpose of the project is to develop and mature aerodynamic decelerator technologies for landing large-mass payloads on the surface of Mars. The technologies include a Supersonic Inflatable Aerodynamic Decelerator and supersonic parachutes. The first Supersonic Flight Dynamics Test occurred on June 28th, 2014 at the Pacific Missile Range Facility. The purpose of this test was to validate the test architecture for future tests. The flight was a success and, in addition, was able to acquire data on the aerodynamic performance of the supersonic inflatable decelerator. The Supersonic Disksail parachute developed a tear during deployment. The second flight test occurred on June 8th, 2015, and incorporated a Supersonic Ringsail parachute which was redesigned based on data from the first flight. Again, the inflatable decelerator functioned as predicted but the parachute was damaged during deployment. This paper describes the instrumentation, analysis techniques, and acquired flight test data utilized to reconstruct the vehicle trajectory, main motor thrust, atmosphere, and aerodynamics.

  20. An automated algorithm for the generation of dynamically reconstructed trajectories

    NASA Astrophysics Data System (ADS)

    Komalapriya, C.; Romano, M. C.; Thiel, M.; Marwan, N.; Kurths, J.; Kiss, I. Z.; Hudson, J. L.

    2010-03-01

    The lack of long enough data sets is a major problem in the study of many real world systems. As it has been recently shown [C. Komalapriya, M. Thiel, M. C. Romano, N. Marwan, U. Schwarz, and J. Kurths, Phys. Rev. E 78, 066217 (2008)], this problem can be overcome in the case of ergodic systems if an ensemble of short trajectories is available, from which dynamically reconstructed trajectories can be generated. However, this method has some disadvantages which hinder its applicability, such as the need for estimation of optimal parameters. Here, we propose a substantially improved algorithm that overcomes the problems encountered by the former one, allowing its automatic application. Furthermore, we show that the new algorithm not only reproduces the short term but also the long term dynamics of the system under study, in contrast to the former algorithm. To exemplify the potential of the new algorithm, we apply it to experimental data from electrochemical oscillators and also to analyze the well-known problem of transient chaotic trajectories.

  1. Dynamic Reconstruction Algorithm of Three-Dimensional Temperature Field Measurement by Acoustic Tomography.

    PubMed

    Li, Yanqiu; Liu, Shi; Inaki, Schlaberg H

    2017-09-12

    Accuracy and speed of algorithms play an important role in the reconstruction of temperature field measurements by acoustic tomography. Existing algorithms are based on static models which only consider the measurement information. A dynamic model of three-dimensional temperature reconstruction by acoustic tomography is established in this paper. A dynamic algorithm is proposed considering both acoustic measurement information and the dynamic evolution information of the temperature field. An objective function is built which fuses measurement information and the space constraint of the temperature field with its dynamic evolution information. Robust estimation is used to extend the objective function. The method combines a tunneling algorithm and a local minimization technique to solve the objective function. Numerical simulations show that the image quality and noise immunity of the dynamic reconstruction algorithm are better when compared with static algorithms such as least square method, algebraic reconstruction technique and standard Tikhonov regularization algorithms. An effective method is provided for temperature field reconstruction by acoustic tomography.

  2. Relationships Between Tibiofemoral Contact Forces and Cartilage Morphology at 2 to 3 Years After Single-Bundle Hamstring Anterior Cruciate Ligament Reconstruction and in Healthy Knees.

    PubMed

    Saxby, David John; Bryant, Adam L; Wang, Xinyang; Modenese, Luca; Gerus, Pauline; Konrath, Jason M; Bennell, Kim L; Fortin, Karine; Wrigley, Tim; Cicuttini, Flavia M; Vertullo, Christopher J; Feller, Julian A; Whitehead, Tim; Gallie, Price; Lloyd, David G

    2017-08-01

    .62, P = .000; lateral: R(2) = 0.19, β = 0.46, P = .03) and medial thicknesses (R(2) = 0.24, β = 0.48, P = .01). In the overall group of ACL-reconstructed knees, greater contact forces were related to greater lateral cartilage volumes (R(2) = 0.08, β = 0.28, P = .01). In ACL-reconstructed knees with lateral meniscal injury, greater lateral contact forces were related to greater lateral cartilage volumes (R(2) = 0.41, β = 0.64, P = .001) and thicknesses (R(2) = 0.20, β = 0.46, P = .04). At 2 to 3 years postsurgery, ACL-reconstructed knees had thinner cartilage compared with healthy knees, and there were no positive relationships between medial contact forces and cartilage morphology. In lateral meniscal-injured reconstructed knees, greater contact forces were related to greater lateral cartilage volumes and thicknesses, although it was unclear whether this was an adaptive response or associated with degeneration. Future clinical studies may seek to establish whether cartilage morphology can be modified through rehabilitation programs targeting contact forces directly in addition to the current rehabilitation foci of restoring passive and dynamic knee range of motion, knee strength, and functional performance.

  3. Relationships Between Tibiofemoral Contact Forces and Cartilage Morphology at 2 to 3 Years After Single-Bundle Hamstring Anterior Cruciate Ligament Reconstruction and in Healthy Knees

    PubMed Central

    Saxby, David John; Bryant, Adam L.; Wang, Xinyang; Modenese, Luca; Gerus, Pauline; Konrath, Jason M.; Bennell, Kim L.; Fortin, Karine; Wrigley, Tim; Cicuttini, Flavia M.; Vertullo, Christopher J.; Feller, Julian A.; Whitehead, Tim; Gallie, Price; Lloyd, David G.

    2017-01-01

    greater tibial cartilage volumes (medial: R 2 = 0.43, β = 0.62, P = .000; lateral: R 2 = 0.19, β = 0.46, P = .03) and medial thicknesses (R 2 = 0.24, β = 0.48, P = .01). In the overall group of ACL-reconstructed knees, greater contact forces were related to greater lateral cartilage volumes (R 2 = 0.08, β = 0.28, P = .01). In ACL-reconstructed knees with lateral meniscal injury, greater lateral contact forces were related to greater lateral cartilage volumes (R 2 = 0.41, β = 0.64, P = .001) and thicknesses (R 2 = 0.20, β = 0.46, P = .04). Conclusion: At 2 to 3 years postsurgery, ACL-reconstructed knees had thinner cartilage compared with healthy knees, and there were no positive relationships between medial contact forces and cartilage morphology. In lateral meniscal-injured reconstructed knees, greater contact forces were related to greater lateral cartilage volumes and thicknesses, although it was unclear whether this was an adaptive response or associated with degeneration. Future clinical studies may seek to establish whether cartilage morphology can be modified through rehabilitation programs targeting contact forces directly in addition to the current rehabilitation foci of restoring passive and dynamic knee range of motion, knee strength, and functional performance. PMID:28894756

  4. Single-molecule reconstruction of oligonucleotide secondary structure by atomic force microscopy.

    PubMed

    Pyne, Alice; Thompson, Ruth; Leung, Carl; Roy, Debdulal; Hoogenboom, Bart W

    2014-08-27

    Based on soft-touch atomic force microscopy, a method is described to reconstruct the secondary structure of single extended biomolecules, without the need for crystallization. The method is tested by accurately reproducing the dimensions of the B-DNA crystal structure. Importantly, intramolecular variations in groove depth of the DNA double helix are resolved, which would be inaccessible for methods that rely on ensemble-averaging. © 2014 The Authors. Published by WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  5. Eulerian Dynamics with a Commutator Forcing

    DTIC Science & Technology

    2017-01-09

    class of L’s which are neither positive nor bounded. We have three typical examples in mind . 1.1. Examples. Consider L = Lφ of the form (1.4) Lφ(f)(x...1.1),(1.2) reads , (1.9) { ρt + (ρu)x = 0, (ρu)t + (ρu 2)x = ρL(ρu)− ρL(ρ)u, (x, t) ∈ Ω× R+. We shall make a detailed study on the propagation of...a priori control estimates via e. The study of global well-posedness for all three cases of commutator forcing we have in mind — bounded, sin- gular

  6. Seasonally forced disease dynamics explored as switching between attractors

    NASA Astrophysics Data System (ADS)

    Keeling, Matt J.; Rohani, Pejman; Grenfell, Bryan T.

    2001-01-01

    Biological phenomena offer a rich diversity of problems that can be understood using mathematical techniques. Three key features common to many biological systems are temporal forcing, stochasticity and nonlinearity. Here, using simple disease models compared to data, we examine how these three factors interact to produce a range of complicated dynamics. The study of disease dynamics has been amongst the most theoretically developed areas of mathematical biology; simple models have been highly successful in explaining the dynamics of a wide variety of diseases. Models of childhood diseases incorporate seasonal variation in contact rates due to the increased mixing during school terms compared to school holidays. This ‘binary’ nature of the seasonal forcing results in dynamics that can be explained as switching between two nonlinear spiral sinks. Finally, we consider the stability of the attractors to understand the interaction between the deterministic dynamics and demographic and environmental stochasticity. Throughout attention is focused on the behaviour of measles, whooping cough and rubella.

  7. Curl force dynamics: symmetries, chaos and constants of motion

    NASA Astrophysics Data System (ADS)

    Berry, M. V.; Shukla, Pragya

    2016-06-01

    This is a theoretical study of Newtonian trajectories governed by curl forces, i.e. position-dependent but not derivable from a potential, investigating in particular the possible existence of conserved quantities. Although nonconservative and nonhamiltonian, curl forces are not dissipative because volume in the position-velocity state space is preserved. A physical example is the effective forces exerted on small particles by light. When the force has rotational symmetry, for example when generated by an isolated optical vortex, particles spiral outwards and escape, even with an attractive gradient force, however strong. Without rotational symmetry, and for dynamics in the plane, the state space is four-dimensional, and to search for possible constants of motion we introduce the Volume of section: a numerical procedure, in which orbits are plotted as dots in a three-dimensional subspace. For some curl forces, e.g. optical fields with two opposite-strength vortices, the dots lie on a surface, indicating a hidden constant of motion. For other curl forces, e.g. those from four vortices, the dots explore clouds, in an unfamiliar kind of chaos, suggesting that no constant of motion exists. The curl force dynamics generated by optical vortices could be studied experimentally.

  8. Dynamic Data-Driven Event Reconstruction for Atmospheric Releases

    SciTech Connect

    Mirin, A A; Kosovic, B

    2007-03-29

    Accidental or terrorist releases of hazardous materials into the atmosphere can impact large populations and cause significant loss of life or property damage. Plume predictions have been shown to be extremely valuable in guiding an effective and timely response. The two greatest sources of uncertainty in the prediction of the consequences of hazardous atmospheric releases result from poorly characterized source terms and lack of knowledge about the state of the atmosphere as reflected in the available meteorological data. We have developed a new event reconstruction methodology that provides probabilistic source term estimates from field measurement data for both accidental and clandestine releases. Accurate plume dispersion prediction requires the following questions to be answered: What was released? When was it released? How much material was released? Where was it released? We have developed a dynamic-data-driven event reconstruction capability that couples data and predictive methods through Bayesian inference to obtain a solution to this inverse problem. The solution consists of a probability distribution of unknown source term parameters. For consequence assessment, we then use this probability distribution to construct a 'composite' forward plume prediction that accounts for the uncertainties in the source term. Since in most cases of practical significance it is impossible to find a closed form solution, Bayesian inference is accomplished by utilizing stochastic sampling methods. This approach takes into consideration both measurement and forward model errors and thus incorporates all the sources of uncertainty in the solution to the inverse problem. Stochastic sampling methods have the additional advantage of being suitable for problems characterized by a non-Gaussian distribution of source term parameters and for cases in which the underlying dynamical system is nonlinear. We initially developed a Markov Chain Monte Carlo (MCMC) stochastic methodology

  9. Static and dynamic buckling of reconstructions at triple steps on Si(111) surfaces

    SciTech Connect

    Zhachuk, R. Teys, S.; Coutinho, J.; Rayson, M. J.; Briddon, P. R.

    2014-10-27

    Triple steps on Si(111) surfaces are popular building blocks for bottom-up nanostructure assembly, conferring size uniformity and precise positioning of growing nanostructures. In this work, we employ the Si(7 7 10) regular stepped surface as model system to study the triple steps by scanning tunneling microscopy (STM) and large-scale first-principles calculations. We find a surprising cohabitation of reconstruction elements at the step edge that either buckles statically or dynamically at room temperature. The driving force for the observed sequence of buckling patterns is traced back to Coulomb interactions involving charged adatoms and rest-atoms lying on a mini-terrace. These results reconcile the Si(111) triple step model with the experimental STM data.

  10. Studying Climate Response to Forcing by the Nonlinear Dynamical Mode Decomposition

    NASA Astrophysics Data System (ADS)

    Mukhin, Dmitry; Gavrilov, Andrey; Loskutov, Evgeny; Feigin, Alexander

    2017-04-01

    An analysis of global climate response to external forcing, both anthropogenic (mainly, CO2 and aerosol) and natural (solar and volcanic), is needed for adequate predictions of global climate change. Being complex dynamical system, the climate reacts to external perturbations exciting feedbacks (both positive and negative) making the response non-trivial and poorly predictable. Thus an extraction of internal modes of climate system, investigation of their interaction with external forcings and further modeling and forecast of their dynamics, are all the problems providing the success of climate modeling. In the report the new method for principal mode extraction from climate data is presented. The method is based on the Nonlinear Dynamical Mode (NDM) expansion [1,2], but takes into account a number of external forcings applied to the system. Each NDM is represented by hidden time series governing the observed variability, which, together with external forcing time series, are mapped onto data space. While forcing time series are considered to be known, the hidden unknown signals underlying the internal climate dynamics are extracted from observed data by the suggested method. In particular, it gives us an opportunity to study the evolution of principal system's mode structure in changing external conditions and separate the internal climate variability from trends forced by external perturbations. Furthermore, the modes so obtained can be extrapolated beyond the observational time series, and long-term prognosis of modes' structure including characteristics of interconnections and responses to external perturbations, can be carried out. In this work the method is used for reconstructing and studying the principal modes of climate variability on inter-annual and decadal time scales accounting the external forcings such as anthropogenic emissions, variations of the solar activity and volcanic activity. The structure of the obtained modes as well as their response to

  11. Dynamic Forces Between Two Deformable Oil Droplets in Water

    NASA Astrophysics Data System (ADS)

    Dagastine, Raymond R.; Manica, Rogério; Carnie, Steven L.; Chan, D. Y. C.; Stevens, Geoffrey W.; Grieser, Franz

    2006-07-01

    The understanding of static interactions in colloidal suspensions is well established, whereas dynamic interactions more relevant to biological and other suspended soft-matter systems are less well understood. We present the direct force measurement and quantitative theoretical description for dynamic forces for liquid droplets in another immiscible fluid. Analysis of this system demonstrates the strong link between interfacial deformation, static surface forces, and hydrodynamic drainage, which govern dynamic droplet-droplet interactions over the length scale of nanometers and over the time scales of Brownian collisions. The results and analysis have direct bearing on the control and manipulation of suspended droplets in soft-matter systems ranging from the emulsions in shampoo to cellular interactions.

  12. Identifying the Stern-Gerlach force of classical electron dynamics

    PubMed Central

    Wen, Meng; Bauke, Heiko; Keitel, Christoph H.

    2016-01-01

    Different classical theories are commonly applied in various branches of physics to describe the relativistic dynamics of electrons by coupled equations for the orbital motion and spin precession. Exemplarily, we benchmark the Frenkel model and the classical Foldy-Wouthuysen model with spin-dependent forces (Stern-Gerlach forces) to the quantum dynamics as predicted by the Dirac equation. Both classical theories can lead to different or even contradicting predictions how the Stern-Gerlach forces modify the electron’s orbital motion, when the electron moves in strong electromagnetic field configurations of emerging high-intensity laser facilities. In this way, one may evaluate the validity and identify the limits of these classical theories via a comparison with possible experiments to provide a proper description of spin-induced dynamics. Our results indicate that the Foldy-Wouthuysen model is qualitatively in better agreement with the Dirac theory than the widely used Frenkel model. PMID:27546820

  13. Dynamic forces between bubbles and surfaces and hydrodynamic boundary conditions.

    PubMed

    Manor, Ofer; Vakarelski, Ivan U; Stevens, Geoffrey W; Grieser, Franz; Dagastine, Raymond R; Chan, Derek Y C

    2008-10-21

    A bubble attached to the end of an atomic force microscope cantilever and driven toward or away from a flat mica surface across an aqueous film is used to characterize the dynamic force that arises from hydrodynamic drainage and electrical double layer interactions across the nanometer thick intervening aqueous film. The hydrodynamic response of the air/water interface can range from a classical fully immobile, no-slip surface in the presence of added surfactants to a partially mobile interface in an electrolyte solution without added surfactants. A model that includes the convection and diffusion of trace surface contaminants can account for the observed behavior presented. This model predicts quantitatively different interfacial dynamics to the Navier slip model that can also be used to fit dynamic force data with a post hoc choice of a slip length.

  14. Identifying the Stern-Gerlach force of classical electron dynamics.

    PubMed

    Wen, Meng; Bauke, Heiko; Keitel, Christoph H

    2016-08-22

    Different classical theories are commonly applied in various branches of physics to describe the relativistic dynamics of electrons by coupled equations for the orbital motion and spin precession. Exemplarily, we benchmark the Frenkel model and the classical Foldy-Wouthuysen model with spin-dependent forces (Stern-Gerlach forces) to the quantum dynamics as predicted by the Dirac equation. Both classical theories can lead to different or even contradicting predictions how the Stern-Gerlach forces modify the electron's orbital motion, when the electron moves in strong electromagnetic field configurations of emerging high-intensity laser facilities. In this way, one may evaluate the validity and identify the limits of these classical theories via a comparison with possible experiments to provide a proper description of spin-induced dynamics. Our results indicate that the Foldy-Wouthuysen model is qualitatively in better agreement with the Dirac theory than the widely used Frenkel model.

  15. Generalized centrifugal-force model for pedestrian dynamics

    NASA Astrophysics Data System (ADS)

    Chraibi, Mohcine; Seyfried, Armin; Schadschneider, Andreas

    2010-10-01

    A spatially continuous force-based model for simulating pedestrian dynamics is introduced which includes an elliptical volume exclusion of pedestrians. We discuss the phenomena of oscillations and overlapping which occur for certain choices of the forces. The main intention of this work is the quantitative description of pedestrian movement in several geometries. Measurements of the fundamental diagram in narrow and wide corridors are performed. The results of the proposed model show good agreement with empirical data obtained in controlled experiments.

  16. [The Northeast: fertility and recent dynamics of the labor force].

    PubMed

    De Oliveira, L A

    1985-01-01

    Data from the 1970 and 1980 censuses of Brazil are analyzed to examine the economic growth of the Notheast, changes in the region's population dynamics, and changes in fertility. Consideration is given to the segmentation of the urban labor market, the income of the economically active population, children in the labor force, female education versus fertility, and family income versus female participation in the work force.

  17. Force Reconstruction from Ejection Tests of Stores from Aircraft Used for Model Predictions and Missing/Bad Gages

    SciTech Connect

    Ross, Michael; Cap, Jerome S.; Starr, Michael J.; Urbina, Angel; Brink, Adam Ray

    2015-12-01

    One of the more severe environments for a store on an aircraft is during the ejection of the store. During this environment it is not possible to instrument all component responses, and it is also likely that some instruments may fail during the environment testing. This work provides a method for developing these responses from failed gages and uninstrumented locations. First, the forces observed by the store during the environment are reconstructed. A simple sampling method is used to reconstruct these forces given various parameters. Then, these forces are applied to a model to generate the component responses. Validation is performed on this methodology.

  18. Dynamic Force Sensing Using an Optically Trapped Probing System

    PubMed Central

    Huang, Yanan; Cheng, Peng; Menq, Chia-Hsiang

    2013-01-01

    This paper presents the design of an adaptive observer that is implemented to enable real-time dynamic force sensing and parameter estimation in an optically trapped probing system. According to the principle of separation of estimation and control, the design of this observer is independent of that of the feedback controller when operating within the linear range of the optical trap. Dynamic force sensing, probe steering/clamping, and Brownian motion control can, therefore, be developed separately and activated simultaneously. The adaptive observer utilizes the measured motion of the trapped probe and input control effort to recursively estimate the probe–sample interaction force in real time, along with the estimation of the probing system’s trapping bandwidth. This capability is very important to achieving accurate dynamic force sensing in a time-varying process, wherein the trapping dynamics is nonstationary due to local variations of the surrounding medium. The adaptive estimator utilizes the Kalman filter algorithm to compute the time-varying gain in real time and minimize the estimation error for force probing. A series of experiments are conducted to validate the design of and assess the performance of the adaptive observer. PMID:24382944

  19. Fast-updating and nonrepeating Lissajous image reconstruction method for capturing increased dynamic information.

    PubMed

    Hoy, Christopher L; Durr, Nicholas J; Ben-Yakar, Adela

    2011-06-01

    We present a fast-updating Lissajous image reconstruction methodology that uses an increased image frame rate beyond the pattern repeat rate generally used in conventional Lissajous image reconstruction methods. The fast display rate provides increased dynamic information and reduced motion blur, as compared to conventional Lissajous reconstruction, at the cost of single-frame pixel density. Importantly, this method does not discard any information from the conventional Lissajous image reconstruction, and frames from the complete Lissajous pattern can be displayed simultaneously. We present the theoretical background for this image reconstruction methodology along with images and video taken using the algorithm in a custom-built miniaturized multiphoton microscopy system.

  20. Force reconstruction for impact tests of an energy-absorbing nose

    SciTech Connect

    Bateman, V.I.; Garne, T.G.; McCall, D.M.

    1990-01-01

    Delivery of a bomb into hard targets at speeds of up to 120 fps required the design of an energy-absorbing nose. The purpose of the nose is to decelerate the projectile and, by absorbing the kinetic energy with deformation, protect the projectile's internal components from high-level (shock) decelerations. A structural simulation of the projectile was designed to test the dynamic deformation characteristics of the energy-absorbing nose. The simulated projectile was instrumented with eight accelerometers mounted with a shock isolation technique. The dynamic force as a function of nose deformation was the desired result from the impact tests because it provides the designer with a performance criterion for the nose design. The dynamic force was obtained by combining the accelerations using the Sum of Weighted Accelerations Technique (SWAT). Results from two field tests are presented. 12 refs., 8 figs.

  1. Mean and covariance properties of dynamic PET reconstructions from list-mode data.

    PubMed

    Asma, Evren; Leahy, Richard M

    2006-01-01

    We derive computationally efficient methods for the estimation of the mean and variance properties of penalized likelihood dynamic positron emission tomography (PET) images. This allows us to predict the accuracy of reconstructed activity estimates and to compare reconstruction algorithms theoretically. We combine a bin-mode approach in which data is modeled as a collection of independent Poisson random variables at each spatiotemporal bin with the space-time separabilities in the imaging equation and penalties to derive rapidly computable analytic mean and variance approximations. We use these approximations to compare bias/variance properties of our dynamic PET image reconstruction algorithm with those of multiframe static PET reconstructions.

  2. Ares I-X First Stage Separation Loads and Dynamics Reconstruction

    NASA Technical Reports Server (NTRS)

    Demory, Lee; Rooker, BIll; Jarmulowicz, Marc; Glaese, John

    2011-01-01

    The Ares I-X flight test provided NASA with the opportunity to test hardware and gather critical data to ensure the success of future Ares I flights. One of the primary test flight objectives was to evaluate the environment during First Stage separation to better understand the conditions that the J-2X second stage engine will experience at ignition [1]. A secondary objective was to evaluate the effectiveness of the stage separation motors. The Ares I-X flight test vehicle was successfully launched on October 29, 2009, achieving most of its primary and secondary test objectives. Ground based video camera recordings of the separation event appeared to show recontact of the First Stage and the Upper Stage Simulator followed by an unconventional tumbling of the Upper Stage Simulator. Closer inspection of the videos and flight test data showed that recontact did not occur. Also, the motion during staging was as predicted through CFD analysis performed during the Ares I-X development. This paper describes the efforts to reconstruct the vehicle dynamics and loads through the staging event by means of a time integrated simulation developed in TREETOPS, a multi-body dynamics software tool developed at NASA [2]. The simulation was built around vehicle mass and geometry properties at the time of staging and thrust profiles for the first stage solid rocket motor as well as for the booster deceleration motors and booster tumble motors. Aerodynamic forces were determined by models created from a combination of wind tunnel testing and CFD. The initial conditions such as position, velocity, and attitude were obtained from the Best Estimated Trajectory (BET), which is compiled from multiple ground based and vehicle mounted instruments. Dynamic loads were calculated by subtracting the inertial forces from the applied forces. The simulation results were compared to the Best Estimated Trajectory, accelerometer flight data, and to ground based video.

  3. Dynamics of the force exchanged between membrane inclusions.

    PubMed

    Fournier, Jean-Baptiste

    2014-03-28

    We study the dynamical response of a fluid membrane to the sudden conformation change of active inclusions linearly coupled to the membrane curvature. The mutual force between two inclusions triggered simultaneously is shown to exhibit a transient maximum much larger than the equilibrium force. Even in the presence of tension, this dynamical interaction is long range over distances much larger than the correlation length. We derive the scaling laws describing these phenomena analytically, and we stress the importance of the damping due to intermonolayer friction.

  4. Passive and active inertia forces in flexible body dynamics

    NASA Astrophysics Data System (ADS)

    Hsu, W. C.; Shabana, A. A.

    1992-12-01

    Passive and active inertia forces of a kinematically driven beam which rotates with specified angular velocities are considered. The passive inertia forces include the passive Coriolis forces and the passive centrifugal forces. It is shown that the dynamics of rotating beam can be described by a set of decoupled equations if the assumed displacement field is defined using a set of orthogonal functions and if the passive Coriolis force is equal to zero. Based on the analysis of inertia forces three systems are identified including active partially active, and passive systems. The active system is based on a mathematical model in which both passive and active inertia forces are fully presented. The partially active system is based on a model in which the passive and active inertia forces are presented partially. The effect of the inertia forces of the passive system appear as a time varying modification of the system parameters. A rotating beam model in which the axial deformation is neglected is shown to be a partially active or passive system.

  5. Influence of impeller shroud forces on turbopump rotor dynamics

    NASA Technical Reports Server (NTRS)

    Williams, Jim P.; Childs, Dara W.

    1989-01-01

    The shrouded-impeller leakage path forces calculated by Childs (1987) have been analyzed to answer two questions. First, because of certain characteristics of the results of Childs, the forces could not be modeled with traditional approaches. Therefore, an approach has been devised to include the forces in conventional rotordynamic analyses. The forces were approximated by traditional stiffness, damping and inertia coefficients with the addition of whirl-frequency-dependent direct and cross-coupled stiffness terms. The forces were found to be well-modeled with this approach. Finally, the effect these forces had on a simple rotor-bearing system was analyzed, and, therefore, they, in addition to seal forces, were applied to a Jeffcott rotor. The traditional methods of dynamic system analysis were modified to incorporate the impeller forces and yielded results for the eigenproblem, frequency response, critical speed, transient response and an iterative technique for finding the frequency of free vibration as well as system stability. All results lead to the conclusion that the forces have little influence on natural frequency but can have appreciable effects on system stability. Specifically, at higher values of fluid swirl at the leakage path entrance, relative stability is reduced. The only unexpected response characteristics that occurred are attributed to the nonlinearity of the model.

  6. Approximate photochemical dynamics of azobenzene with reactive force fields

    NASA Astrophysics Data System (ADS)

    Li, Yan; Hartke, Bernd

    2013-12-01

    We have fitted reactive force fields of the ReaxFF type to the ground and first excited electronic states of azobenzene, using global parameter optimization by genetic algorithms. Upon coupling with a simple energy-gap transition probability model, this setup allows for completely force-field-based simulations of photochemical cis→trans- and trans→cis-isomerizations of azobenzene, with qualitatively acceptable quantum yields. This paves the way towards large-scale dynamics simulations of molecular machines, including bond breaking and formation (via the reactive force field) as well as photochemical engines (presented in this work).

  7. Approximate photochemical dynamics of azobenzene with reactive force fields

    SciTech Connect

    Li, Yan; Hartke, Bernd

    2013-12-14

    We have fitted reactive force fields of the ReaxFF type to the ground and first excited electronic states of azobenzene, using global parameter optimization by genetic algorithms. Upon coupling with a simple energy-gap transition probability model, this setup allows for completely force-field-based simulations of photochemical cis→trans- and trans→cis-isomerizations of azobenzene, with qualitatively acceptable quantum yields. This paves the way towards large-scale dynamics simulations of molecular machines, including bond breaking and formation (via the reactive force field) as well as photochemical engines (presented in this work)

  8. Dynamics of Cell Area and Force during Spreading

    PubMed Central

    Brill-Karniely, Yifat; Nisenholz, Noam; Rajendran, Kavitha; Dang, Quynh; Krishnan, Ramaswamy; Zemel, Assaf

    2014-01-01

    Experiments on human pulmonary artery endothelial cells are presented to show that cell area and the force exerted on a substrate increase simultaneously, but with different rates during spreading; rapid-force increase systematically occurred several minutes past initial spreading. We examine this theoretically and present three complementary mechanisms that may accompany the development of lamellar stress during spreading and underlie the observed behavior. These include: 1), the dynamics of cytoskeleton assembly at the cell basis; 2), the strengthening of acto-myosin forces in response to the generated lamellar stresses; and 3), the passive strain-stiffening of the cytoskeleton. PMID:25517168

  9. Asymmetric interlimb transfer of concurrent adaptation to opposing dynamic forces

    PubMed Central

    Miall, R. C.; Woolley, D. G.

    2007-01-01

    Interlimb transfer of a novel dynamic force has been well documented. It has also been shown that unimanual adaptation to opposing novel environments is possible if they are associated with different workspaces. The main aim of this study was to test if adaptation to opposing velocity dependent viscous forces with one arm could improve the initial performance of the other arm. The study also examined whether this interlimb transfer occurred across an extrinsic, spatial, coordinative system or an intrinsic, joint based, coordinative system. Subjects initially adapted to opposing viscous forces separated by target location. Our measure of performance was the correlation between the speed profiles of each movement within a force condition and an ‘average’ trajectory within null force conditions. Adaptation to the opposing forces was seen during initial acquisition with a significantly improved coefficient in epoch eight compared to epoch one. We then tested interlimb transfer from the dominant to non-dominant arm (D → ND) and vice-versa (ND → D) across either an extrinsic or intrinsic coordinative system. Interlimb transfer was only seen from the dominant to the non-dominant limb across an intrinsic coordinative system. These results support previous studies involving adaptation to a single dynamic force but also indicate that interlimb transfer of multiple opposing states is possible. This suggests that the information available at the level of representation allowing interlimb transfer can be more intricate than a general movement goal or a single perceived directional error. PMID:17703286

  10. Gamma-range corticomuscular coherence during dynamic force output.

    PubMed

    Omlor, Wolfgang; Patino, Luis; Hepp-Reymond, Marie-Claude; Kristeva, Rumyana

    2007-02-01

    The beta-range synchronization between cortical motor and muscular activity as revealed by EEG/MEG-EMG coherence has been extensively investigated for steady-state motor output. However, there is a lack of information on the modulation of the corticomuscular coherence in conjunction with dynamic force output. We addressed this question comparing the EEG-EMG coherence and the cortical motor spectral power in eight healthy subjects in a visuomotor task, in which the subjects exerted a steady-state or periodically modulated dynamic isometric force output with their right-index finger to keep a visual cursor within a target zone. In the static condition, significant coherence was confined to the beta-range. In the dynamic condition, the most distinct coherence occurred in the gamma-range and the significant beta-range coherence was strikingly reduced. The cortical motor power in the beta-range during dynamic force output was decreased, whereas the power in the gamma-range remained without significant change. We conclude that during dynamic force the corticospinal oscillation mode of the sensorimotor system shifts towards higher (principally gamma) frequencies for the rapid integration of the visual and somatosensory information required to produce the appropriate motor command.

  11. Reconstruction of Kelvin probe force microscopy image with experimentally calibrated point spread function

    NASA Astrophysics Data System (ADS)

    Lan, Fei; Jiang, Minlin; Tao, Quan; Wei, Fanan; Li, Guangyong

    2017-03-01

    A Kelvin probe force microscopy (KPFM) image is sometimes difficult to interpret because it is a blurred representation of the true surface potential (SP) distribution of the materials under test. The reason for the blurring is that KPFM relies on the detection of electrostatic force, which is a long-range force compared to other surface forces. Usually, KPFM imaging model is described as the convolution of the true SP distribution of the sample with an intrinsic point spread function (PSF) of the measurement system. To restore the true SP signals from the blurred ones, the intrinsic PSF of the system is needed. In this work, we present a way to experimentally calibrate the PSF of the KPFM system. Taking the actual probe shape and experimental parameters into consideration, this calibration method leads to a more accurate PSF than the ones obtained from simulations. Moreover, a nonlinear reconstruction algorithm based on total variation (TV) regularization is applied to KPFM measurement to reverse the blurring caused by PSF during KPFM imaging process; as a result, noises are reduced and the fidelity of SP signals is improved.

  12. Do ground reaction forces during unilateral and bilateral movements exhibit compensation strategies following ACL reconstruction?

    PubMed

    Baumgart, Christian; Schubert, Markus; Hoppe, Matthias W; Gokeler, Alli; Freiwald, Jürgen

    2017-05-01

    The aims of the study were (1) to evaluate the leg asymmetry assessed with ground reaction forces (GRFs) during unilateral and bilateral movements of different knee loads in anterior cruciate ligament (ACL) reconstructed patients and (2) to investigate differences in leg asymmetry depending on the International Knee Documentation Committee Subjective Form (IKDC) in order to identify potential compensation strategies. The knee function of 50 ACL reconstructed (patella tendon) patients was examined at 31 ± 7 months after the surgery. GRFs were quantified during the sit-to-stand and stand-to-sit test, the step-up and step-down test, and the two- and one-leg vertical jump. Further, the IKDC score, the anterior-posterior knee laxity, and the concentric torque of the quadriceps and hamstring muscles were evaluated. Differences between the operated and non-operated leg were found in the knee laxity, the quadriceps torque, and GRFs. The patients with low IKDC scores demonstrated greater leg asymmetries in GRFs compared to the patients with high IKDC scores. ACL reconstructed patients showed GRF asymmetries during unilateral and bilateral movements of different knee loads. Three compensation strategies were found in patients with low subjective knee function: (1) a reduced eccentric load, (2) an inter-limb compensation during bilateral movements, and (3) the avoidance of high vertical impact forces. These compensation strategies may be indicative of a protective adaptation to avoid excessive ACL strain. GRF measurements are practicable and efficient tools to identify individual compensation strategies during early rehabilitation.

  13. Towards a myocardial contraction force reconstruction technique for heart disease assessment and therapy planning

    NASA Astrophysics Data System (ADS)

    Haddad, Seyyed M. H.; Drangova, Maria; White, James A.; Samani, Abbas

    2014-03-01

    Cardiac ischemic injuries can be classified into two main categories: reversible and irreversible. Treatment of reversible damages is possible through revascularization therapies. Clinically, it is quite vital to determine the reversibility of ischemic injuries and local efficiency using accurate diagnostics techniques. For this purpose, a number of imaging techniques have been developed. To our knowledge, while some of these techniques are capable of assessing tissue viability which is believed to be correlated with ischemic injuries reversibility, none of them are capable of providing information about local myocardial tissue efficiency. Note that this efficiency indicates the local tissue contribution to the overall (global) heart mechanical function which is characterized by parameters such as ejection fraction. While contraction force generation of the myocardium is a reliable and straightforward mechanical measure for the local myocardium functionality, it is also hypothesized that the level of damage reversibility expected from therapy is proportional to the intensity and distribution of these forces. As such this research involves developing a new imaging technique for cardiac contraction force quantification. This work is also geared towards another application, namely Cardiac Resynchronization Therapy (CRT), specifically for electrode leads configuration optimization. The latter has not been tackled through a systematic technique thus far. In the proposed method, contraction force reconstruction is accomplished by an inverse problem algorithm solved through an optimization framework which uses forward mechanical modelling of the myocardium iteratively to obtain the contraction forces field. As a result, the method requires a forward mechanical model of the myocardium which is computationally efficient and robust against divergence. Therefore, we developed such a model which considers all aspects of the myocardial mechanics including hyperelasticity

  14. Dynamic relaxation in algebraic reconstruction technique (ART) for breast tomosynthesis imaging.

    PubMed

    Oliveira, N; Mota, A M; Matela, N; Janeiro, L; Almeida, P

    2016-08-01

    A major challenge in Digital Breast Tomosynthesis (DBT) is handling image noise since the 3D reconstructed images are obtained from low dose projections and limited angular range. The use of the iterative reconstruction algorithm Algebraic Reconstruction Technique (ART) in clinical context depends on two key factors: the number of iterations needed (time consuming) and the image noise after iterations. Both factors depend highly on a relaxation coefficient (λ), which may give rise to slow or noisy reconstructions, when a single λ value is considered for the entire iterative process. The aim of this work is to present a new implementation for the ART that takes into account a dynamic mode to calculate λ in DBT image reconstruction. A set of initial reconstructions of real phantom data was done using constant λ values. The results were used to choose, for each iteration, the suitable λ value, taking into account the image noise level and the convergence speed. A methodology to optimize λ automatically during the image reconstruction was proposed. Results showed we can dynamically choose λ values in such a way that the time needed to reconstruct the images can be significantly reduced (up to 70%) while achieving similar image quality. These results were confirmed with one clinical dataset. With simple methodology we were able to dynamically choose λ in DBT image reconstruction with ART, allowing a shorter image reconstruction time without increasing image noise. Copyright © 2016 Elsevier Ireland Ltd. All rights reserved.

  15. Surface reconstruction in reactive dynamics: A kinetic Monte Carlo approach

    NASA Astrophysics Data System (ADS)

    Noussiou, V. K.; Provata, A.

    2007-07-01

    The oscillatory CO oxidation reaction on the restructuring surface of Pt(1 0 0) is studied through a mesoscopic kinetic Monte Carlo (KMC) approach. The present model is an extension of the standard ZGB model with specific attention to the emergence of oscillations in surface reactions. A square and a purely hexagonal lattice are used as substrates on which the CO oxidation reaction steps take place. The dynamics of the reaction on the two substrates exhibit the ZGB kinetic phase transitions, at different kinetic parameter values for each substrate. Surface reconstruction is modelled through switching between the two lattice types. Oscillations are produced in those parametric areas where the steady state concentrations on the two substrates are considerably different. The parametric area where notable oscillations are observed is narrow, but is greatly enhanced when different sticking coefficients of oxygen are taken into account. CO diffusion introduced microscopically to the model on the hexagonal lattice shifts the kinetic transition points and increases considerably the time needed to reach the steady state.

  16. Model based control of dynamic atomic force microscope

    SciTech Connect

    Lee, Chibum; Salapaka, Srinivasa M.

    2015-04-15

    A model-based robust control approach is proposed that significantly improves imaging bandwidth for the dynamic mode atomic force microscopy. A model for cantilever oscillation amplitude and phase dynamics is derived and used for the control design. In particular, the control design is based on a linearized model and robust H{sub ∞} control theory. This design yields a significant improvement when compared to the conventional proportional-integral designs and verified by experiments.

  17. Model based control of dynamic atomic force microscope

    NASA Astrophysics Data System (ADS)

    Lee, Chibum; Salapaka, Srinivasa M.

    2015-04-01

    A model-based robust control approach is proposed that significantly improves imaging bandwidth for the dynamic mode atomic force microscopy. A model for cantilever oscillation amplitude and phase dynamics is derived and used for the control design. In particular, the control design is based on a linearized model and robust H∞ control theory. This design yields a significant improvement when compared to the conventional proportional-integral designs and verified by experiments.

  18. Model based control of dynamic atomic force microscope.

    PubMed

    Lee, Chibum; Salapaka, Srinivasa M

    2015-04-01

    A model-based robust control approach is proposed that significantly improves imaging bandwidth for the dynamic mode atomic force microscopy. A model for cantilever oscillation amplitude and phase dynamics is derived and used for the control design. In particular, the control design is based on a linearized model and robust H(∞) control theory. This design yields a significant improvement when compared to the conventional proportional-integral designs and verified by experiments.

  19. Chaotic dynamics in the seasonally forced SIR epidemic model.

    PubMed

    Barrientos, Pablo G; Rodríguez, J Ángel; Ruiz-Herrera, Alfonso

    2017-04-22

    We prove analytically the existence of chaotic dynamics in the forced SIR model. Although numerical experiments have already suggested that this model can exhibit chaotic dynamics, a rigorous proof (without computer-aided) was not given before. Under seasonality in the transmission rate, the coexistence of low birth and mortality rates with high recovery and transmission rates produces infinitely many periodic and aperiodic patterns together with sensitive dependence on the initial conditions.

  20. Dynamics of intermittent force fluctuations in vesicular nanotubulation

    NASA Astrophysics Data System (ADS)

    Ashok, B.; Ananthakrishna, G.

    2014-11-01

    Irregular force fluctuations are seen in most nanotubulation experiments. The dynamics behind their presence has, however, been neither commented upon nor modeled. A simple estimate of the mean energy dissipated in force drops turns out to be several times the thermal energy. This coupled with the rate dependent nature of the deformation reported in several experiments point to a dynamical origin of the serrations. We simplify the whole process of tether formation through a three-stage model of successive deformations of sphere to ellipsoid, neck-formation, and tubule birth and extension. Based on this, we envisage a rate-softening frictional force at the neck that must be overcome before a nanotube can be pulled out. Our minimal model includes elastic and visco-elastic deformation of the vesicle, and has built-in dependence on pull velocity, vesicle radius, and other material parameters, enabling us to capture various kinds of serrated force-extension curves for different parameter choices. Serrations are predicted in the nanotubulation region. Other features of force-extension plots reported in the literature such as a plateauing serrated region beyond a force drop, serrated flow region with a small positive slope, an increase in the elastic threshold with pull velocity, force-extension curves for vesicles with larger radius lying lower than those for smaller radius, are all also predicted by the model. A toy model is introduced to demonstrate that the role of the friction law is limited to inducing stick-slip oscillations in the force, and all other qualitative and quantitative features emerging from the model can only be attributed to other physical mechanisms included in the deformation dynamics of the vesicle.

  1. Monitoring dynamic loads on wind tunnel force balances

    NASA Technical Reports Server (NTRS)

    Ferris, Alice T.; White, William C.

    1989-01-01

    Two devices have been developed at NASA Langley to monitor the dynamic loads incurred during wind-tunnel testing. The Balance Dynamic Display Unit (BDDU), displays and monitors the combined static and dynamic forces and moments in the orthogonal axes. The Balance Critical Point Analyzer scales and sums each normalized signal from the BDDU to obtain combined dynamic and static signals that represent the dynamic loads at predefined high-stress points. The display of each instrument is a multiplex of six analog signals in a way that each channel is displayed sequentially as one-sixth of the horizontal axis on a single oscilloscope trace. Thus this display format permits the operator to quickly and easily monitor the combined static and dynamic level of up to six channels at the same time.

  2. Monitoring dynamic loads on wind tunnel force balances

    NASA Technical Reports Server (NTRS)

    Ferris, Alice T.; White, William C.

    1989-01-01

    Two devices have been developed at NASA Langley to monitor the dynamic loads incurred during wind-tunnel testing. The Balance Dynamic Display Unit (BDDU), displays and monitors the combined static and dynamic forces and moments in the orthogonal axes. The Balance Critical Point Analyzer scales and sums each normalized signal from the BDDU to obtain combined dynamic and static signals that represent the dynamic loads at predefined high-stress points. The display of each instrument is a multiplex of six analog signals in a way that each channel is displayed sequentially as one-sixth of the horizontal axis on a single oscilloscope trace. Thus this display format permits the operator to quickly and easily monitor the combined static and dynamic level of up to six channels at the same time.

  3. Influence of impeller shroud forces on turbopump rotor dynamics

    NASA Technical Reports Server (NTRS)

    Williams, J. P.; Childs, Dara W.

    1993-01-01

    The shrouded-impeller leakage path forces calculated by Childs have been analyzed to answer two questions. First, because of certain characteristics or the results of Childs, the forces could not be modeled with traditional approaches. Therefore, an approach has been devised to include the forces in conventional rotordynamic analyses. The forces were found to be well-modeled with this approach. Finally, the effect these forces had on a simple rotor-bearing system was analyzed, and, therefore, they, in addition to seal forces, were applied to a Jeffcott rotor. The traditional methods of dynamic system analysis were modified to incorporate the impeller forces and yielded results for the eigenproblem, frequency response, critical speed, transient response, and an iterative technique for finding the frequency of free vibration as well as system stability. All results lead to the conclusion that the forces have little influence on natural frequency but can have appreciable effects on system stability. Specifically, at higher values of fluid swirl at the leakage path entrance, relative stability is reduced. The only unexpected response characteristics that occurred are attributed to the nonlinearity of the model.

  4. Determination of dynamic surface forces using piezoelectric arrays

    NASA Astrophysics Data System (ADS)

    Nitsche, W.; Mirow, P.

    The experimental determination of static and dynamic surface forces on flow bodies using piezoelectric arrays is outlined. The fundamentals of the piezo-array sensor technique (sensor construction, signal separation, and signal transmission) are presented. Practical applications of piezo-arrays in the fields of airfoil aerodynamics and general flow investigations are explained. The obtained measuring results are purely qualitative.

  5. Hidden Multiple Bond Effects in Dynamic Force Spectroscopy

    PubMed Central

    Getfert, Sebastian; Reimann, Peter

    2012-01-01

    In dynamic force spectroscopy, a (bio-)molecular complex is subjected to a steadily increasing force until the chemical bond breaks. Repeating the same experiment many times results in a broad distribution of rupture forces, whose quantitative interpretation represents a formidable theoretical challenge. In this study we address the situation that more than a single molecular bond is involved in one experimental run, giving rise to multiple rupture events that are even more difficult to analyze and thus are usually eliminated as far as possible from the further evaluation of the experimental data. We develop and numerically solve a detailed model of a complete dynamic force spectroscopy experiment including a possible clustering of molecules on the substrate surface, the formation of bonds, their dissociation under load, and the postprocessing of the force extension curves. We show that the data, remaining after elimination of obvious multiple rupture events, may still contain a considerable number of hidden multiple bonds, which are experimentally indistinguishable from true single bonds, but which have considerable effects on the resulting rupture force statistics and its consistent theoretical interpretation. PMID:22404941

  6. Universal data-based method for reconstructing complex networks with binary-state dynamics

    NASA Astrophysics Data System (ADS)

    Li, Jingwen; Shen, Zhesi; Wang, Wen-Xu; Grebogi, Celso; Lai, Ying-Cheng

    2017-03-01

    To understand, predict, and control complex networked systems, a prerequisite is to reconstruct the network structure from observable data. Despite recent progress in network reconstruction, binary-state dynamics that are ubiquitous in nature, technology, and society still present an outstanding challenge in this field. Here we offer a framework for reconstructing complex networks with binary-state dynamics by developing a universal data-based linearization approach that is applicable to systems with linear, nonlinear, discontinuous, or stochastic dynamics governed by monotonic functions. The linearization procedure enables us to convert the network reconstruction into a sparse signal reconstruction problem that can be resolved through convex optimization. We demonstrate generally high reconstruction accuracy for a number of complex networks associated with distinct binary-state dynamics from using binary data contaminated by noise and missing data. Our framework is completely data driven, efficient, and robust, and does not require any a priori knowledge about the detailed dynamical process on the network. The framework represents a general paradigm for reconstructing, understanding, and exploiting complex networked systems with binary-state dynamics.

  7. Universal data-based method for reconstructing complex networks with binary-state dynamics.

    PubMed

    Li, Jingwen; Shen, Zhesi; Wang, Wen-Xu; Grebogi, Celso; Lai, Ying-Cheng

    2017-03-01

    To understand, predict, and control complex networked systems, a prerequisite is to reconstruct the network structure from observable data. Despite recent progress in network reconstruction, binary-state dynamics that are ubiquitous in nature, technology, and society still present an outstanding challenge in this field. Here we offer a framework for reconstructing complex networks with binary-state dynamics by developing a universal data-based linearization approach that is applicable to systems with linear, nonlinear, discontinuous, or stochastic dynamics governed by monotonic functions. The linearization procedure enables us to convert the network reconstruction into a sparse signal reconstruction problem that can be resolved through convex optimization. We demonstrate generally high reconstruction accuracy for a number of complex networks associated with distinct binary-state dynamics from using binary data contaminated by noise and missing data. Our framework is completely data driven, efficient, and robust, and does not require any a priori knowledge about the detailed dynamical process on the network. The framework represents a general paradigm for reconstructing, understanding, and exploiting complex networked systems with binary-state dynamics.

  8. 3-dimensional forces and molecular dynamics of live cells

    NASA Astrophysics Data System (ADS)

    Hur, Sung Sik; Li, Yi-Shuan; Park, Joon Seok; Hu, Ying-Li; Chien, Shu

    2010-08-01

    The forces exerted by an adherent cell on a substrate were studied previously only in the two-dimensions (2D) tangential to the substrate surface. We used a novel technique to measure the three-dimensional (3D) stresses exerted by live bovine aortic endothelial cells (BAECs) on polyacrylamide deformable substrate, with particular emphasis on the 3D forces of focal adhesions. On 3D images acquired by confocal microscopy, displacements were determined with imageprocessing programs, and stresses in tangential (XY) and normal (Z) directions were computed by finite element method (FEM). BAECs generated stress in normal direction (Tz) with an order of magnitude comparable to that in tangential direction (Txy). Tz is upward at the cell edge and downward under the nucleus, changing continuously with a sign reversal between cell edge and nucleus edge. With the use of green fluorescent protein (GFP) labeled paxillin, the dynamics of this intracellular molecule were studied concurrently with the measurement of 3D forces. In the dynamic region, including the new lamellapodium forming region in the front and the retracting region in the rear, the tangential forces (Fxy) are correlated with the size of the focal adhesions (FAs) much more strongly than those in the stable region under the nucleus. In the dynamic region, normal force (Fz) was upward and positively correlated with FA size, while Fz in the stable region was downward and negatively correlated with FA size. These findings show the influence of the size of FAs on the 3D forces they exert on the substrate. This technique can be applied to study any adherent type of live cells to assess their biomechanical dynamics in conjunction with biochemical and functional activities, thus elucidating cellular functions in health and disease.

  9. A test of improved force field parameters for urea: molecular-dynamics simulations of urea crystals.

    PubMed

    Özpınar, Gül Altınbaş; Beierlein, Frank R; Peukert, Wolfgang; Zahn, Dirk; Clark, Timothy

    2012-08-01

    Molecular-dynamics (MD) simulations of urea crystals of different shapes (cubic, rectangular prismatic, and sheet) have been performed using our previously published force field for urea. This force field has been validated by calculating values for the cohesive energy, sublimation temperature, and melting point from the MD data. The cohesive energies computed from simulations of cubic and rectangular prismatic urea crystals in vacuo at 300 K agreed very well with the experimental sublimation enthalpies reported at 298 K. We also found very good agreement between the melting points as observed experimentally and from simulations. Annealing the crystals just below the melting point leads to reconstruction to form crystal faces that are consistent with experimental observations. The simulations reveal a melting mechanism that involves surface (corner/edge) melting well below the melting point, and rotational disordering of the urea molecules in the corner/edge regions of the crystal, which then facilitates the translational motion of these molecules.

  10. Dynamics of living phytoplankton: Implications for paleoenvironmental reconstructions

    NASA Astrophysics Data System (ADS)

    Barbosa, A. B.

    2009-01-01

    Phytoplankton is the dominant primary producer in aquatic ecosystems and is considered a gauge of ecological condition and change. Some phytoplankton groups, namely diatoms, dinoflagellates, and coccolithophores, produce morphological or chemical fossils that can be used for paleoenvironmental reconstruction. This study aims to review the processes that regulate dynamics in living phytoplankton and to highlight how this knowledge is used in paleoecological studies. The distribution patterns of phytoplankton in present-day aquatic ecosystems are shaped by the interplay between processes that regulate cell growth and cell death. Cell growth and cell death are regulated by the internal environment of phytoplankton (e.g., specific environmental tolerances, resource uptake properties, cell size, density and morphology, alternative nutritional strategies such as mixotrophy or N2 uptake, motility, intracellular storage capacities, grazing resistance properties), and by its external environment. The external environment includes variables dependent on the availability of resources (e.g., light intensity, concentration of CO2 and dissolved inorganic macronutrients and micronutrients, availability of living prey in case of mixotrophs) and variables independent of resources (e.g., temperature, salinity, turbulence, ultraviolet radiation, bioactive compounds, activity of grazers, viruses, and eukaryotic parasites). The importance of recently described loss processes, such as grazing by phagotrophic protists, viral lyses, and programmed cell death, is discussed in the context of its potential impact upon phytoplankton vertical fluxes. Examples of the use of different phytoplankton metrics (e.g. abundance, species composition, species morphology, and elemental composition) to infer contemporaneous as well as past environmental and ecological conditions are critically evaluated.

  11. Reconstructing long-term gully dynamics in Mediterranean agricultural areas

    NASA Astrophysics Data System (ADS)

    Hayas, Antonio; Vanwalleghem, Tom; Laguna, Ana; Peña, Adolfo; Giráldez, Juan V.

    2017-01-01

    Gully erosion is an important erosive process in Mediterranean basins. However, the long-term dynamics of gully networks and the variations in sediment production in gullies are not well known. Available studies are often conducted only over a few years, while many gully networks form, grow, and change in response to environmental and land use or management changes over a long period. In order to clarify the effect of these changes, it is important to analyse the evolution of the gully network with a high temporal resolution. This study aims at analysing gully morphodynamics over a long timescale (1956-2013) in a large Mediterranean area in order to quantify gully erosion processes and their contribution to overall sediment dynamics. A gully network of 20 km2 located in southwestern Spain has been analysed using a sequence of 10 aerial photographs in the period 1956-2013. The extension of the gully network both increased and decreased in the study period. Gully drainage density varied between 1.93 km km-2 in 1956, a minimum of 1.37 km km-2 in 1980, and a maximum of 5.40 km km-2 in 2013. The main controlling factor of gully activity appeared to be rainfall. Land use changes were found to have only a secondary effect. A new Monte Carlo-based approach was proposed to reconstruct gully erosion rates from orthophotos. Gully erosion rates were found to be relatively stable between 1956 and 2009, with a mean value of 11.2 t ha-1 yr-1. In the period 2009-2011, characterized by severe winter rainfalls, this value increased significantly to 591 t ha-1 yr-1. These results show that gully erosion rates are highly variable and that a simple interpolation between the starting and ending dates greatly underestimates gully contribution during certain years, such as, for example, between 2009 and 2011. This illustrates the importance of the methodology applied using a high temporal resolution of orthophotos.

  12. Reconstructing network topology and coupling strengths in directed networks of discrete-time dynamics

    NASA Astrophysics Data System (ADS)

    Lai, Pik-Yin

    2017-02-01

    Reconstructing network connection topology and interaction strengths solely from measurement of the dynamics of the nodes is a challenging inverse problem of broad applicability in various areas of science and engineering. For a discrete-time step network under noises whose noise-free dynamics is stationary, we derive general analytic results relating the weighted connection matrix of the network to the correlation functions obtained from time-series measurements of the nodes for networks with one-dimensional intrinsic node dynamics. Information about the intrinsic node dynamics and the noise strengths acting on the nodes can also be obtained. Based on these results, we develop a scheme that can reconstruct the above information of the network using only the time-series measurements of node dynamics as input. Reconstruction formulas for higher-dimensional node dynamics are also derived and illustrated with a two-dimensional node dynamics network system. Furthermore, we extend our results and obtain a reconstruction scheme even for the cases when the noise-free dynamics is periodic. We demonstrate that our method can give accurate reconstruction results for weighted directed networks with linear or nonlinear node dynamics of various connection topologies, and with linear or nonlinear couplings.

  13. Dynamic PET Image reconstruction for parametric imaging using the HYPR kernel method

    NASA Astrophysics Data System (ADS)

    Spencer, Benjamin; Qi, Jinyi; Badawi, Ramsey D.; Wang, Guobao

    2017-03-01

    Dynamic PET image reconstruction is a challenging problem because of the ill-conditioned nature of PET and the lowcounting statistics resulted from short time-frames in dynamic imaging. The kernel method for image reconstruction has been developed to improve image reconstruction of low-count PET data by incorporating prior information derived from high-count composite data. In contrast to most of the existing regularization-based methods, the kernel method embeds image prior information in the forward projection model and does not require an explicit regularization term in the reconstruction formula. Inspired by the existing highly constrained back-projection (HYPR) algorithm for dynamic PET image denoising, we propose in this work a new type of kernel that is simpler to implement and further improves the kernel-based dynamic PET image reconstruction. Our evaluation study using a physical phantom scan with synthetic FDG tracer kinetics has demonstrated that the new HYPR kernel-based reconstruction can achieve a better region-of-interest (ROI) bias versus standard deviation trade-off for dynamic PET parametric imaging than the post-reconstruction HYPR denoising method and the previously used nonlocal-means kernel.

  14. Reconstruction of electrostatic force microscopy image for nanoscale potential distributions with potential steps

    NASA Astrophysics Data System (ADS)

    Ding, X. D.; Gao, P. F.; Zhao, L. B.; Lin, G. C.

    2017-04-01

    Given the stray capacitance between the probe and sample surface, electrostatic force microscopy (EFM) suffers from the probe averaging effect of electrostatic signals for measuring nanoscale potential distributions. A method for reconstructing an EFM image is presented by using the step response function (SRF) as the system transfer function. The SRF is constructed numerically by conducting finite element method simulations and reconsidering both the probe shape and tip-sample distance. The deconvolution of the probe averaging effect for the electrostatic image is demonstrated using an elaborated sample of graphene ribbons that are used as nanoscale surface potential steps. The lateral resolution of the electrostatic image is improved via deconvolution. The results present a powerful tool for explaining the EFM image to reduce the probe averaging effect effectively, especially for the sample with nanoscale potential steps.

  15. MR-guided dynamic PET reconstruction with the kernel method and spectral temporal basis functions

    NASA Astrophysics Data System (ADS)

    Novosad, Philip; Reader, Andrew J.

    2016-06-01

    Recent advances in dynamic positron emission tomography (PET) reconstruction have demonstrated that it is possible to achieve markedly improved end-point kinetic parameter maps by incorporating a temporal model of the radiotracer directly into the reconstruction algorithm. In this work we have developed a highly constrained, fully dynamic PET reconstruction algorithm incorporating both spectral analysis temporal basis functions and spatial basis functions derived from the kernel method applied to a co-registered T1-weighted magnetic resonance (MR) image. The dynamic PET image is modelled as a linear combination of spatial and temporal basis functions, and a maximum likelihood estimate for the coefficients can be found using the expectation-maximization (EM) algorithm. Following reconstruction, kinetic fitting using any temporal model of interest can be applied. Based on a BrainWeb T1-weighted MR phantom, we performed a realistic dynamic [18F]FDG simulation study with two noise levels, and investigated the quantitative performance of the proposed reconstruction algorithm, comparing it with reconstructions incorporating either spectral analysis temporal basis functions alone or kernel spatial basis functions alone, as well as with conventional frame-independent reconstruction. Compared to the other reconstruction algorithms, the proposed algorithm achieved superior performance, offering a decrease in spatially averaged pixel-level root-mean-square-error on post-reconstruction kinetic parametric maps in the grey/white matter, as well as in the tumours when they were present on the co-registered MR image. When the tumours were not visible in the MR image, reconstruction with the proposed algorithm performed similarly to reconstruction with spectral temporal basis functions and was superior to both conventional frame-independent reconstruction and frame-independent reconstruction with kernel spatial basis functions. Furthermore, we demonstrate that a joint spectral

  16. MR-guided dynamic PET reconstruction with the kernel method and spectral temporal basis functions.

    PubMed

    Novosad, Philip; Reader, Andrew J

    2016-06-21

    Recent advances in dynamic positron emission tomography (PET) reconstruction have demonstrated that it is possible to achieve markedly improved end-point kinetic parameter maps by incorporating a temporal model of the radiotracer directly into the reconstruction algorithm. In this work we have developed a highly constrained, fully dynamic PET reconstruction algorithm incorporating both spectral analysis temporal basis functions and spatial basis functions derived from the kernel method applied to a co-registered T1-weighted magnetic resonance (MR) image. The dynamic PET image is modelled as a linear combination of spatial and temporal basis functions, and a maximum likelihood estimate for the coefficients can be found using the expectation-maximization (EM) algorithm. Following reconstruction, kinetic fitting using any temporal model of interest can be applied. Based on a BrainWeb T1-weighted MR phantom, we performed a realistic dynamic [(18)F]FDG simulation study with two noise levels, and investigated the quantitative performance of the proposed reconstruction algorithm, comparing it with reconstructions incorporating either spectral analysis temporal basis functions alone or kernel spatial basis functions alone, as well as with conventional frame-independent reconstruction. Compared to the other reconstruction algorithms, the proposed algorithm achieved superior performance, offering a decrease in spatially averaged pixel-level root-mean-square-error on post-reconstruction kinetic parametric maps in the grey/white matter, as well as in the tumours when they were present on the co-registered MR image. When the tumours were not visible in the MR image, reconstruction with the proposed algorithm performed similarly to reconstruction with spectral temporal basis functions and was superior to both conventional frame-independent reconstruction and frame-independent reconstruction with kernel spatial basis functions. Furthermore, we demonstrate that a joint spectral

  17. Comparing Molecular Dynamics Force Fields in the Essential Subspace

    PubMed Central

    Gomez-Puertas, Paulino; Boomsma, Wouter; Lindorff-Larsen, Kresten

    2015-01-01

    The continued development and utility of molecular dynamics simulations requires improvements in both the physical models used (force fields) and in our ability to sample the Boltzmann distribution of these models. Recent developments in both areas have made available multi-microsecond simulations of two proteins, ubiquitin and Protein G, using a number of different force fields. Although these force fields mostly share a common mathematical form, they differ in their parameters and in the philosophy by which these were derived, and previous analyses showed varying levels of agreement with experimental NMR data. To complement the comparison to experiments, we have performed a structural analysis of and comparison between these simulations, thereby providing insight into the relationship between force-field parameterization, the resulting ensemble of conformations and the agreement with experiments. In particular, our results show that, at a coarse level, many of the motional properties are preserved across several, though not all, force fields. At a finer level of detail, however, there are distinct differences in both the structure and dynamics of the two proteins, which can, together with comparison with experimental data, help to select force fields for simulations of proteins. A noteworthy observation is that force fields that have been reparameterized and improved to provide a more accurate energetic description of the balance between helical and coil structures are difficult to distinguish from their “unbalanced” counterparts in these simulations. This observation implies that simulations of stable, folded proteins, even those reaching 10 microseconds in length, may provide relatively little information that can be used to modify torsion parameters to achieve an accurate balance between different secondary structural elements. PMID:25811178

  18. Sparse-view Reconstruction of Dynamic Processes by Neutron Tomography

    NASA Astrophysics Data System (ADS)

    Wang, Hu; Kaestner, Anders; Zou, Yubin; Lu, Yuanrong; Guo, Zhiyu

    As for neutron tomography, hundreds of projections over the range of 0-180 degrees are required to reconstruct the attenuation matrix with the traditional filtered back projection (FBP) algorithm, and the total acquisition time can reach several hours. This poor temporal resolution constrains that neutron tomography is only feasible to investigate static or quasi-static process. Reducing the number of projections is a possible way to improve the temporal resolution, which however highly relies on sparse-view reconstruction algorithms. To assess the feasibility of sparse-view reconstruction for neutron tomography, both simulation and an experiment of water uptake from a piece of wood composite were studied, and the results indicated that temporal resolution of neutron tomography can be improved when combining the Golden Ratio scan strategy with a prior image-constrained sparse-view reconstruction algorithm-PICCS.

  19. Inflationary dynamics reconstruction via inverse-scattering theory

    NASA Astrophysics Data System (ADS)

    Mastache, Jorge; Zago, Fernando; Kosowsky, Arthur

    2017-03-01

    The evolution of inflationary fluctuations can be recast as an inverse scattering problem. In this context, we employ the Gel'fand-Levitan method from inverse-scattering theory to reconstruct the evolution of both the inflaton field freeze-out horizon and the Hubble parameter during inflation. We demonstrate this reconstruction procedure numerically for a scenario of slow-roll inflation, as well as for a scenario which temporarily departs from slow-roll. The field freeze-out horizon is reconstructed from the accessible primordial scalar power spectrum alone, while the reconstruction of the Hubble parameter requires additional information from the tensor power spectrum. We briefly discuss the application of this technique to more realistic cases incorporating estimates of the primordial power spectra over limited ranges of scales and with specified uncertainties.

  20. Tipless Nitinol Stone Baskets: Comparison of Penetration Force, Radial Dilation Force, Opening Dynamics, and Deflection.

    PubMed

    Patel, Nishant; Akhavein, Arash; Hinck, Bryan; Jain, Rajat; Monga, Manoj

    2017-05-01

    To evaluate 5 commercially available tipless nitinol baskets (2.2F) in 4 performance factors: penetration force, radial dilation force, opening dynamics, and deflection limitation. The 2.2F Coloplast Dormia No-Tip, 1.5F Sacred Heart Medical Halo, 2.2F Cook NCircle Nitinol Tipless Stone Extractor, 1.9F Bard SkyLite Tipless Nitinol Basket, and 1.9F Boston Scientific Zero Tip Nitinol Stone Retrieval Basket were tested for penetration force (safety metric), radial dilation force (functional metric for ureteral calculi), and opening or closing dynamics. Limitation of deflection (functional metric) was tested by measuring the difference in maximal upward and downward angle of deflection of a ureteroscope with and without a basket in place. The Sacred Heart Medical Halo 1.5F basket had the highest mean force required to perforate the foil at 0.676N ± 0.117 (P < .0001). The Sacred Heart Medical Halo 1.5F basket also had the highest mean radial dilation force at 3.04 g ± 0.15 (P < .0001). The Cook NCircle Nitinol Tipless Stone Extractor 2.2F had the most linear pattern of opening, whereas the Coloplast Dormia No-Tip 2.2F and the Sacred Heart Medical Halo 1.5F exhibited exponential opening dynamics. The Cook NCircle Nitinol Tipless Stone Extractor 2.2F limited scope deflection the most with a decrease in 4° downward and 10° upward. The Sacred Heart Medical Halo 1.5F had the least influence on deflection with a decrease in 3° downward and 5° upward. The penetration force, radial dilation force, opening dynamics, and resistance to deflection varied between 5 commonly available tipless nitinol stone baskets. A small diameter 1.5F basket is capable of providing optimal performance while sacrificing linear opening. Copyright © 2017 Elsevier Inc. All rights reserved.

  1. Knee moment and shear force are correlated with femoral tunnel orientation after single-bundle anterior cruciate ligament reconstruction.

    PubMed

    Wang, Hongsheng; Fleischli, James E; Hutchinson, Ian D; Zheng, Naiquan Nigel

    2014-10-01

    Increasing evidence has shown that anatomic single-bundle anterior cruciate ligament reconstruction (ACLR) better restores normal knee kinematics and functionality than nonanatomic ACLR. Whether anatomic reconstruction results in better knee kinetics during daily activities has not been fully investigated. To assess the relationship between femoral tunnel angle and kinetic parameters of the knee joint during walking after single-bundle ACLR and to compare the radiographic and kinetic results of patients who underwent anatomic ACLR with those of patients who underwent nonanatomic ACLR. Controlled laboratory study. Twenty-one patients who underwent unilateral ACLR were recruited, and 20 healthy subjects from a previous study were used as a control group. All surgical procedures were performed by a single surgeon, 11 using the transtibial (TT) technique and 10 using the anteromedial portal (AMP) technique. Femoral tunnel orientation was measured from posterior-to-anterior radiographs. Dynamic knee joint moments and shear forces during gait were evaluated using 3-dimensional motion analysis and inverse dynamics. Relationships between femoral tunnel angles and kinetic results were evaluated via linear regression. Results were compared between 2 ACLR groups and controls using 1-way analysis of variance. Femoral tunnel angle had significant correlations with peak external knee flexion moment and posterior shear force during early stance. The TT group had a significantly smaller (more vertical) mean femoral tunnel angle (19.4° ± 4.1°) than the AMP group (36.4° ± 5.8°). Significant reductions were found in the normalized peak external knee flexion moment (TT, 0.15 ± 0.12 Nm/kg·m; AMP, 0.25 ± 0.12 Nm/kg·m; control, 0.25 ± 0.16 Nm/kg·m) (P = .032) and posterior shear force (TT, 0.64 ± 0.55 N/kg; AMP, 1.10 ± 0.58 N/kg; control, 1.35 ± 0.55 N/kg) (P = .024) in the TT group compared with controls, but not in the AMP group. Moreover, a significantly greater medial

  2. Dynamic stability of repulsive-force maglev suspension systems

    SciTech Connect

    Cai, Y.; Rote, D.M.; Mulcahy, T.M.; Wang, Z.

    1996-11-01

    This report summarizes the research performed on maglev vehicle dynamic stability at Argonne National Laboratory during the past few years. It also documents both measured and calculated magnetic-force data. Because dynamic instability is not acceptable for any commercial maglev system, it is important to consider this phenomenon in the development of all maglev systems. This report presents dynamic stability experiments on maglev systems and compares the results with predictions calculated by a nonlinear-dynamics computer code. Instabilities of an electrodynamic-suspension system type vehicle model were obtained by experimental observation and computer simulation of a five-degree-of-freedom maglev vehicle moving on a guideway that consists of a pair of L-shaped aluminum conductors attached to a rotating wheel. The experimental and theoretical analyses developed in this study identify basic stability characteristics and future research needs of maglev systems.

  3. Direct observation of dynamic force propagation between focal adhesions of cells on microposts by atomic force microscopy

    NASA Astrophysics Data System (ADS)

    Okada, Akinori; Mizutani, Yusuke; Subagyo, Agus; Hosoi, Hirotaka; Nakamura, Motonori; Sueoka, Kazuhisa; Kawahara, Koichi; Okajima, Takaharu

    2011-12-01

    We investigated dynamic force propagation between focal adhesions of fibroblast cells cultured on polydimethylsiloxane micropost substrates, by atomic force microscopy. Live cells were mechanically modulated by the atomic force microscopy probe bound to cell apical surfaces at 0.01-0.5 Hz, while microposts served as a force sensor at basal surfaces. We observed that cells exhibited rheological behavior at the apical surface but had no apparent out-of-phase response at the basal surface, indicating that the dynamic force propagating through cytoskeletal filaments behaves in an elastic manner. Moreover, the direction of the propagated force was observed to be intimately associated with the prestress.

  4. Direct reconstruction of pharmacokinetic parameters in dynamic fluorescence molecular tomography by the augmented Lagrangian method

    NASA Astrophysics Data System (ADS)

    Zhu, Dianwen; Zhang, Wei; Zhao, Yue; Li, Changqing

    2016-03-01

    Dynamic fluorescence molecular tomography (FMT) has the potential to quantify physiological or biochemical information, known as pharmacokinetic parameters, which are important for cancer detection, drug development and delivery etc. To image those parameters, there are indirect methods, which are easier to implement but tend to provide images with low signal-to-noise ratio, and direct methods, which model all the measurement noises together and are statistically more efficient. The direct reconstruction methods in dynamic FMT have attracted a lot of attention recently. However, the coupling of tomographic image reconstruction and nonlinearity of kinetic parameter estimation due to the compartment modeling has imposed a huge computational burden to the direct reconstruction of the kinetic parameters. In this paper, we propose to take advantage of both the direct and indirect reconstruction ideas through a variable splitting strategy under the augmented Lagrangian framework. Each iteration of the direct reconstruction is split into two steps: the dynamic FMT image reconstruction and the node-wise nonlinear least squares fitting of the pharmacokinetic parameter images. Through numerical simulation studies, we have found that the proposed algorithm can achieve good reconstruction results within a small amount of time. This will be the first step for a combined dynamic PET and FMT imaging in the future.

  5. Dynamic force balances and cell shape changes during cytokinesis.

    PubMed

    Sain, Anirban; Inamdar, Mandar M; Jülicher, Frank

    2015-01-30

    During the division of animal cells, an actomyosin ring is formed in the cell cortex. The contraction of this ring induces shape changes of the cell and the formation of a cytokinesis furrow. In many cases, a cell-cell interface forms that separates the two new cells. Here we present a simple physical description of the cell shape changes and the dynamics of the interface closure, based on force balances involving active stresses and viscous friction. We discuss conditions in which the interface closure is either axially symmetric or asymmetric. We show that our model can account for the observed dynamics of ring contraction and interface closure in the C. elegans embryo.

  6. [Tension force in dynamic splints made of neoprene].

    PubMed

    Punsola-Izard, V; Rouzaud, J C; Thomas, D; Lluch; Garcia-Elias

    2001-06-01

    Dynamic splints are the most difficult ortheses to make. Unrestricted finger joint mobility is usually prevented by the size of their components. Ortheses made out of neoprene material have the advantage of being pliable and at the same time can be constructed as dynamic splints. Neoprene material elasticity allows conforming it into a tube that can be fitted over a finger, spreading uniform pressure. A traction slip can be cemented to the neoprene finger tube. With neoprene splints, lever arms are more efficient. Their tubular design applies and spreads traction and countertraction forces in all directions. Neoprene material's elasticity contributes in reducing edema formation as well as distributes forces applied to the finger over a large area. The risk of excessive pressure is the only drawback of an elastic tubular design, it may cause pain and tissue ischemia. A meticulous tailoring prevents this potential risk.

  7. Evaluation of the sensing block method for dynamic force measurement

    NASA Astrophysics Data System (ADS)

    Zhang, Qinghui; Chen, Hao; Li, Wenzhao; Song, Li

    2017-01-01

    Sensing block method was proposed for the dynamic force measurement by Tanimura et al. in 1994. Comparing with the Split Hopkinson pressure bar (SHPB) technique, it can provide a much longer measuring time for the dynamic properties test of materials. However, the signals recorded by sensing block are always accompanied with additional oscillations. Tanimura et al. discussed the effect of force rising edge on the test results, whereas more research is still needed. In this paper, some more dominant factors have been extracted through dimensional analysis. The finite element simulation has been performed to assess these factors. Base on the analysis and simulation, some valuable results are obtained and some criterions proposed in this paper can be applied in design or selection of the sensing block.

  8. Effect of nonharmonic forcing on bluff-body vortex dynamics.

    PubMed

    Konstantinidis, E; Bouris, D

    2009-04-01

    Forced nonharmonic excitation of the two-dimensional flow about a circular cylinder is studied by numerical simulations at mean Reynolds numbers of 180 and 150. Moderate deviations of the forced inflow velocity waveform from a pure harmonic generate different modes of phase-locked vortex formation in the cylinder wake, involving combinations of single and/or pairs of vortices for the same forcing frequency and peak-to-peak amplitude. The dynamical response of the wake oscillator is studied by employing phase portraits of the drag and lift coefficients that display modified limit-cycle behavior due to nonharmonic excitation. It is further shown that changing solely the velocity waveform can incite transition from a quasiperiodic state to a phase-locked state. The findings demonstrate that the wake oscillator is admissible to an infinite number of phase-locked and/or modulated states characterized by a single point on the frequency-amplitude plane.

  9. Effects of Intermediate Bound States in Dynamic Force Spectroscopy

    PubMed Central

    Derényi, Imre; Bartolo, Denis; Ajdari, Armand

    2004-01-01

    We revisit some aspects of the interpretation of dynamic force spectroscopy experiments. The standard theory predicts that the typical unbinding force f* is linearly proportional to the logarithm of the loading rate r when a single energy barrier controls the unbinding process. For a more complex situation of N barriers, it predicts at most N linear segments for the f* vs. log(r) curve, each segment characterizing a different barrier. Here we extend this existing picture using a refined approximation, provide a more general analytical formula, and show that in principle up to N(N + 1) / 2 segments can show up experimentally. As a consequence, the determination of the positions and even the number of the energy barriers from the experimental data can be ambiguous. A further possible consequence of a multiple-barrier landscape is a bimodal or multimodal distribution of the unbinding force at certain loading rates, a feature recently observed experimentally. PMID:14990459

  10. Dynamic calibration of higher eigenmode parameters of a cantilever in atomic force microscopy by using tip-surface interactions.

    PubMed

    Borysov, Stanislav S; Forchheimer, Daniel; Haviland, David B

    2014-01-01

    We present a theoretical framework for the dynamic calibration of the higher eigenmode parameters (stiffness and optical lever inverse responsivity) of a cantilever. The method is based on the tip-surface force reconstruction technique and does not require any prior knowledge of the eigenmode shape or the particular form of the tip-surface interaction. The calibration method proposed requires a single-point force measurement by using a multimodal drive and its accuracy is independent of the unknown physical amplitude of a higher eigenmode.

  11. Dynamic calibration of higher eigenmode parameters of a cantilever in atomic force microscopy by using tip–surface interactions

    PubMed Central

    Forchheimer, Daniel; Haviland, David B

    2014-01-01

    Summary We present a theoretical framework for the dynamic calibration of the higher eigenmode parameters (stiffness and optical lever inverse responsivity) of a cantilever. The method is based on the tip–surface force reconstruction technique and does not require any prior knowledge of the eigenmode shape or the particular form of the tip–surface interaction. The calibration method proposed requires a single-point force measurement by using a multimodal drive and its accuracy is independent of the unknown physical amplitude of a higher eigenmode. PMID:25383301

  12. Dynamic calibration of higher eigenmode parameters of a cantilever in atomic force microscopy by using tip–surface interactions

    SciTech Connect

    Borysov, Stanislav S.; Forchheimer, Daniel; Haviland, David B.

    2014-10-29

    Here we present a theoretical framework for the dynamic calibration of the higher eigenmode parameters (stiffness and optical lever inverse responsivity) of a cantilever. The method is based on the tip–surface force reconstruction technique and does not require any prior knowledge of the eigenmode shape or the particular form of the tip–surface interaction. The calibration method proposed requires a single-point force measurement by using a multimodal drive and its accuracy is independent of the unknown physical amplitude of a higher eigenmode.

  13. Dynamic calibration of higher eigenmode parameters of a cantilever in atomic force microscopy by using tip–surface interactions

    DOE PAGES

    Borysov, Stanislav S.; Forchheimer, Daniel; Haviland, David B.

    2014-10-29

    Here we present a theoretical framework for the dynamic calibration of the higher eigenmode parameters (stiffness and optical lever inverse responsivity) of a cantilever. The method is based on the tip–surface force reconstruction technique and does not require any prior knowledge of the eigenmode shape or the particular form of the tip–surface interaction. The calibration method proposed requires a single-point force measurement by using a multimodal drive and its accuracy is independent of the unknown physical amplitude of a higher eigenmode.

  14. A dynamic force and moment analysis system for brachiation.

    PubMed

    Chang, Y H; Bertram, J E; Ruina, A

    1997-12-01

    We describe a transducer system and analysis strategy that allows the determination of dynamic forces and moments applied by an arm-swinging animal during locomotion. We have employed readily available technology and analysis procedures to produce a low-cost but effective system. The solutions to several problems in the design of the system are provided, and the functional characteristics of the system are demonstrated using both an inert pendulum and an actively brachiating gibbon (Hylobates lar).

  15. Langevin Dynamics with Space-Time Periodic Nonequilibrium Forcing

    NASA Astrophysics Data System (ADS)

    Joubaud, R.; Pavliotis, G. A.; Stoltz, G.

    2015-01-01

    We present results on the ballistic and diffusive behavior of the Langevin dynamics in a periodic potential that is driven away from equilibrium by a space-time periodic driving force, extending some of the results obtained by Collet and Martinez in (J Math Biol, 56(6):765-792 2008). In the hyperbolic scaling, a nontrivial average velocity can be observed even if the external forcing vanishes in average. More surprisingly, an average velocity in the direction opposite to the forcing may develop at the linear response level—a phenomenon called negative mobility. The diffusive limit of the non-equilibrium Langevin dynamics is also studied using the general methodology of central limit theorems for additive functionals of Markov processes. To apply this methodology, which is based on the study of appropriate Poisson equations, we extend recent results on pointwise estimates of the resolvent of the generator associated with the Langevin dynamics. Our theoretical results are illustrated by numerical simulations of a two-dimensional system.

  16. Subharmonic Oscillations and Chaos in Dynamic Atomic Force Microscopy

    NASA Technical Reports Server (NTRS)

    Cantrell, John H.; Cantrell, Sean A.

    2015-01-01

    The increasing use of dynamic atomic force microscopy (d-AFM) for nanoscale materials characterization calls for a deeper understanding of the cantilever dynamics influencing scan stability, predictability, and image quality. Model development is critical to such understanding. Renormalization of the equations governing d- AFM provides a simple interpretation of cantilever dynamics as a single spring and mass system with frequency dependent cantilever stiffness and damping parameters. The renormalized model is sufficiently robust to predict the experimentally observed splitting of the free-space cantilever resonance into multiple resonances upon cantilever-sample contact. Central to the model is the representation of the cantilever sample interaction force as a polynomial expansion with coefficients F(sub ij) (i,j = 0, 1, 2) that account for the effective interaction stiffness parameter, the cantilever-to-sample energy transfer, and the amplitude of cantilever oscillation. Application of the Melnikov method to the model equation is shown to predict a homoclinic bifurcation of the Smale horseshoe type leading to a cascade of period doublings with increasing drive displacement amplitude culminating in chaos and loss of image quality. The threshold value of the drive displacement amplitude necessary to initiate subharmonic generation depends on the acoustic drive frequency, the effective damping coefficient, and the nonlinearity of the cantilever-sample interaction force. For parameter values leading to displacement amplitudes below threshold for homoclinic bifurcation other bifurcation scenarios can occur, some of which lead to chaos.

  17. Minimizing tip-sample forces and enhancing sensitivity in atomic force microscopy with dynamically compliant cantilevers

    NASA Astrophysics Data System (ADS)

    Keyvani, Aliasghar; Sadeghian, Hamed; Tamer, Mehmet Selman; Goosen, Johannes Frans Loodewijk; van Keulen, Fred

    2017-06-01

    Due to the harmonic motion of the cantilever in Tapping Mode Atomic Force Microscopy, it is seemingly impossible to estimate the tip-sample interactions from the motion of the cantilever. Not directly observing the interaction force, it is possible to damage the surface or the tip by applying an excessive mechanical load. The tip-sample interactions scale with the effective stiffness of the probe. Thus, the reduction of the mechanical load is usually limited by the manufacturability of low stiffness probes. However, the one-to-one relationship between spring constant and applied force only holds when higher modes of the cantilever are not excited. In this paper, it is shown that, by passively tuning higher modes of the cantilever, it is possible to reduce the peak repulsive force. These tuned probes can be dynamically more compliant than conventional probes with the same static spring constant. Both theoretical and experimental results show that a proper tuning of dynamic modes of cantilevers reduces the contact load and increases the sensitivity considerably. Moreover, due to the contribution of higher modes, the tuned cantilevers provide more information on the tip-sample interaction. This extra information from the higher harmonics can be used for mapping and possibly identification of material properties of samples.

  18. Dynamic Response of Model Lipid Membranes to Ultrasonic Radiation Force

    PubMed Central

    Prieto, Martin Loynaz; Oralkan, Ömer; Khuri-Yakub, Butrus T.; Maduke, Merritt C.

    2013-01-01

    Low-intensity ultrasound can modulate action potential firing in neurons in vitro and in vivo. It has been suggested that this effect is mediated by mechanical interactions of ultrasound with neural cell membranes. We investigated whether these proposed interactions could be reproduced for further study in a synthetic lipid bilayer system. We measured the response of protein-free model membranes to low-intensity ultrasound using electrophysiology and laser Doppler vibrometry. We find that ultrasonic radiation force causes oscillation and displacement of lipid membranes, resulting in small (<1%) changes in membrane area and capacitance. Under voltage-clamp, the changes in capacitance manifest as capacitive currents with an exponentially decaying sinusoidal time course. The membrane oscillation can be modeled as a fluid dynamic response to a step change in pressure caused by ultrasonic radiation force, which disrupts the balance of forces between bilayer tension and hydrostatic pressure. We also investigated the origin of the radiation force acting on the bilayer. Part of the radiation force results from the reflection of the ultrasound from the solution/air interface above the bilayer (an effect that is specific to our experimental configuration) but part appears to reflect a direct interaction of ultrasound with the bilayer, related to either acoustic streaming or scattering of sound by the bilayer. Based on these results, we conclude that synthetic lipid bilayers can be used to study the effects of ultrasound on cell membranes and membrane proteins. PMID:24194863

  19. Frequency adaptation for enhanced radiation force amplitude in dynamic elastography.

    PubMed

    Ouared, Abderrahmane; Montagnon, Emmanuel; Kazemirad, Siavash; Gaboury, Louis; Robidoux, André; Cloutier, Guy

    2015-08-01

    In remote dynamic elastography, the amplitude of the generated displacement field is directly related to the amplitude of the radiation force. Therefore, displacement improvement for better tissue characterization requires the optimization of the radiation force amplitude by increasing the push duration and/or the excitation amplitude applied on the transducer. The main problem of these approaches is that the Food and Drug Administration (FDA) thresholds for medical applications and transducer limitations may be easily exceeded. In the present study, the effect of the frequency used for the generation of the radiation force on the amplitude of the displacement field was investigated. We found that amplitudes of displacements generated by adapted radiation force sequences were greater than those generated by standard nonadapted ones (i.e., single push acoustic radiation force impulse and supersonic shear imaging). Gains in magnitude were between 20 to 158% for in vitro measurements on agar-gelatin phantoms, and 170 to 336% for ex vivo measurements on a human breast sample, depending on focus depths and attenuations of tested samples. The signal-to-noise ratio was also improved more than 4-fold with adapted sequences. We conclude that frequency adaptation is a complementary technique that is efficient for the optimization of displacement amplitudes. This technique can be used safely to optimize the deposited local acoustic energy without increasing the risk of damaging tissues and transducer elements.

  20. Dynamic force spectroscopy of parallel individual mucin1-antibody bonds

    SciTech Connect

    Sulchek, T A; Friddle, R W; Langry, K; Lau, E; Albrecht, H; Ratto, T; DeNardo, S; Colvin, M E; Noy, A

    2005-05-02

    We used atomic force microscopy (AFM) to measure the binding forces between Mucin1 (MUC1) peptide and a single chain antibody fragment (scFv) selected from a scFv library screened against MUC1. This binding interaction is central to the design of the molecules for targeted delivery of radioimmunotherapeutic agents for prostate and breast cancer treatment. Our experiments separated the specific binding interaction from non-specific interactions by tethering the antibody and MUC1 molecules to the AFM tip and sample surface with flexible polymer spacers. Rupture force magnitude and elastic characteristics of the spacers allowed identification of the bond rupture events corresponding to different number of interacting proteins. We used dynamic force spectroscopy to estimate the intermolecular potential widths and equivalent thermodynamic off rates for mono-, bi-, and tri-valent interactions. Measured interaction potential parameters agree with the results of molecular docking simulation. Our results demonstrate that an increase of the interaction valency leads to a precipitous decline in the dissociation rate. Binding forces measured for mono and multivalent interactions match the predictions of a Markovian model for the strength of multiple uncorrelated bonds in parallel configuration. Our approach is promising for comparison of the specific effects of molecular modifications as well as for determination of the best configuration of antibody-based multivalent targeting agents.

  1. Dynamic force profile in hydraulic hybrid vehicles: a numerical investigation

    NASA Astrophysics Data System (ADS)

    Mohaghegh-Motlagh, Amin; Elahinia, Mohammad H.

    2010-04-01

    A hybrid hydraulic vehicle (HHV) combines a hydraulic sub-system with the conventional drivetrain in order to improve fuel economy for heavy vehicles. The added hydraulic module manages the storage and release of fluid power necessary to assist the motion of the vehicle. The power collected by a pump/motor (P/M) from the regenerative braking phase is stored in a high-pressure accumulator and then released by the P/M to the driveshaft during the acceleration phase. This technology is effective in significantly improving fuel-economy for heavy-class vehicles with frequent stop-and-go drive schedules. Despite improved fuel economy and higher vehicle acceleration, noise and vibrations are one of the main problems of these vehicles. The dual function P/Ms are the main source of noise and vibration in a HHV. This study investigates the dynamics of a P/M and particularly the profile and frequency-dependence of the dynamic forces generated by a bent-axis P/M unit. To this end, the fluid dynamics side of the problem has been simplified for investigating the system from a dynamics perspective. A mathematical model of a bent axis P/M has been developed to investigate the cause of vibration and noise in HHVs. The forces are calculated in time and frequency domains. The results of this work can be used to study the vibration response of the chassis and to design effective vibration isolation systems for HHVs.

  2. Guided crowd dynamics via modified social force model

    NASA Astrophysics Data System (ADS)

    Yang, Xiaoxia; Dong, Hairong; Wang, Qianling; Chen, Yao; Hu, Xiaoming

    2014-10-01

    Pedestrian dynamics is of great theoretical significance for strategy design of emergency evacuation. Modification of pedestrian dynamics based on the social force model is presented to better reflect pedestrians' behavioral characteristics in emergency. Specifically, the modified model can be used for guided crowd dynamics in large-scale public places such as subway stations and stadiums. This guided crowd model is validated by explicitly comparing its density-speed and density-flow diagrams with fundamental diagrams. Some social phenomena such as gathering, balance and conflicts are clearly observed in simulation, which further illustrate the effectiveness of the proposed modeling method. Also, time delay for pedestrians with time-dependent desired velocities is observed and explained using the established model in this paper. Furthermore, this guided crowd model is applied to the simulation system of Beijing South Railway Station for predictive evacuation experiments.

  3. Dynamic force and moment coefficients for short length annular seals

    NASA Astrophysics Data System (ADS)

    San Andres, Luis

    1993-01-01

    Close form expressions for the dynamic force and moment coefficients in short length annular pressure seals operating at the concentric and aligned position are derived. The analysis considers fully developed turbulent flow within the seal and determines a set of ordinary differential equations for the bulk-flow field due to perturbations in rotor displacements and angular motions. The flow equations are solved exactly for seals of short length where dynamic variations in circumferential velocity are neglected. The analytical solution derived is simple and reasonably accurate for seals of length to diameter ratios (L/D) as large as 0.5 as comparisons with results from full-scale numerical solutions show. The formulae presented are practical for use in preliminary design stages and parametric studies of dynamic seal performance.

  4. Dynamic force matching: Construction of dynamic coarse-grained models with realistic short time dynamics and accurate long time dynamics

    NASA Astrophysics Data System (ADS)

    Davtyan, Aram; Voth, Gregory A.; Andersen, Hans C.

    2016-12-01

    We recently developed a dynamic force matching technique for converting a coarse-grained (CG) model of a molecular system, with a CG potential energy function, into a dynamic CG model with realistic dynamics [A. Davtyan et al., J. Chem. Phys. 142, 154104 (2015)]. This is done by supplementing the model with additional degrees of freedom, called "fictitious particles." In that paper, we tested the method on CG models in which each molecule is coarse-grained into one CG point particle, with very satisfactory results. When the method was applied to a CG model of methanol that has two CG point particles per molecule, the results were encouraging but clearly required improvement. In this paper, we introduce a new type (called type-3) of fictitious particle that exerts forces on the center of mass of two CG sites. A CG model constructed using type-3 fictitious particles (as well as type-2 particles previously used) gives a much more satisfactory dynamic model for liquid methanol. In particular, we were able to construct a CG model that has the same self-diffusion coefficient and the same rotational relaxation time as an all-atom model of liquid methanol. Type-3 particles and generalizations of it are likely to be useful in converting more complicated CG models into dynamic CG models.

  5. Dynamic knee joint mechanics after anterior cruciate ligament reconstruction.

    PubMed

    Clarke, Sarah B; Kenny, Ian C; Harrison, Andrew J

    2015-01-01

    There is scarcity of information on the long-term adaptations in lower limb biomechanics during game-specific movements after anterior cruciate ligament (ACL) reconstruction. Particularly, variables such as knee abduction moments and transverse plane knee motion have not been studied during a game-specific landing and cutting task after ACL reconstruction. The purpose of this study was to compare the hip and knee mechanics between the ACL-reconstructed (ACLr) group and a healthy control group. Thirty-eight reconstructed athletes (18 ACLr, 18 control) participated in the study. Three-dimensional hip, knee, and ankle angles were calculated during a maximal drop jump land from a 0.30-m box and unanticipated cutting task at 45°. During the landing phase, ACLr participants had increased hip flexion (P < 0.003) and transverse plane knee range of motion (P = 0.027). During the cutting phase, the ACLr participant's previously injured limb had increased internal knee abduction moment compared with that of the control group (P = 0.032). No significant differences were reported between the previously injured and contralateral uninjured limb. Previously injured participants demonstrated higher knee abduction moment and transverse plane range of motion when compared with those of control participants during a game-specific landing and cutting task.

  6. On estimating intraventricular hemodynamic forces from endocardial dynamics: A comparative study with 4D flow MRI.

    PubMed

    Pedrizzetti, Gianni; Arvidsson, Per M; Töger, Johannes; Borgquist, Rasmus; Domenichini, Federico; Arheden, Håkan; Heiberg, Einar

    2017-07-26

    Intraventricular pressure gradients or hemodynamic forces, which are their global measure integrated over the left ventricular volume, have a fundamental importance in ventricular function. They may help revealing a sub-optimal cardiac function that is not evident in terms of tissue motion, which is naturally heterogeneous and variable, and can influence cardiac adaptation. However, hemodynamic forces are not utilized in clinical cardiology due to the unavailability of simple non-invasive measurement tools. Hemodynamic forces depend on the intraventricular flow; nevertheless, most of them are imputable to the dynamics of the endocardial flow boundary and to the exchange of momentum across the mitral and aortic orifices. In this study, we introduce a simplified model based on first principles of fluid dynamics that allows estimating hemodynamic forces without knowing the velocity field inside the LV. The model is validated with 3D phase-contrast MRI (known as 4D flow MRI) in 15 subjects, (5 healthy and 10 patients) using the endocardial surface reconstructed from the three standard long-axis projections. Results demonstrate that the model provides consistent estimates for the base-apex component (mean correlation coefficient r=0.77 for instantaneous values and r=0.88 for root mean square) and good estimates of the inferolateral-anteroseptal component (r=0.50 and 0.84, respectively). The present method represents a potential integration to the existing ones quantifying endocardial deformation in MRI and echocardiography to add a physics-based estimation of the corresponding hemodynamic forces. These could help the clinician to early detect sub-clinical diseases and differentiate between different cardiac dysfunctional states. Copyright © 2017 Elsevier Ltd. All rights reserved.

  7. A CLASS OF RECONSTRUCTED DISCONTINUOUS GALERKIN METHODS IN COMPUTATIONAL FLUID DYNAMICS

    SciTech Connect

    Hong Luo; Yidong Xia; Robert Nourgaliev

    2011-05-01

    A class of reconstructed discontinuous Galerkin (DG) methods is presented to solve compressible flow problems on arbitrary grids. The idea is to combine the efficiency of the reconstruction methods in finite volume methods and the accuracy of the DG methods to obtain a better numerical algorithm in computational fluid dynamics. The beauty of the resulting reconstructed discontinuous Galerkin (RDG) methods is that they provide a unified formulation for both finite volume and DG methods, and contain both classical finite volume and standard DG methods as two special cases of the RDG methods, and thus allow for a direct efficiency comparison. Both Green-Gauss and least-squares reconstruction methods and a least-squares recovery method are presented to obtain a quadratic polynomial representation of the underlying linear discontinuous Galerkin solution on each cell via a so-called in-cell reconstruction process. The devised in-cell reconstruction is aimed to augment the accuracy of the discontinuous Galerkin method by increasing the order of the underlying polynomial solution. These three reconstructed discontinuous Galerkin methods are used to compute a variety of compressible flow problems on arbitrary meshes to assess their accuracy. The numerical experiments demonstrate that all three reconstructed discontinuous Galerkin methods can significantly improve the accuracy of the underlying second-order DG method, although the least-squares reconstructed DG method provides the best performance in terms of both accuracy, efficiency, and robustness.

  8. Dynamics of Circular Contact Lines: Spin Coating under Marangoni forces.

    NASA Astrophysics Data System (ADS)

    Mukhopadhyay, Shomeek; Behringer, Robert

    2007-11-01

    Spin Coating remains one of the most important industrial applications of fluid dynamics, where understanding and controlling the instabilities is very important. The basic configuration consists of a fluid drop that is initially centrally located on a flat horizontal rotating surface. In this work we report on experiments on thin liquid films and fingering instabilities of a liquid drop, over a large range of angular speeds (from 10 mHz to 10Hz) of completely wetting PDMS oils on oxidized silicon wafers. Using a novel experimental setup, we will look at the effect of applying a radial temperature gradient (as opposed to a vertical gradient) on the dynamics of both the drop and the thin liquid film. In this case, the Marangoni forces oppose the centrifugal body forces. Depending on the relative strength of the driving force (angular speeds of 1 to 10 Hz and temparature gradients of 10 K/cm) and the drop size (volume of the drop varies from 1 microlitre to 100 microlitre) nontrivial wave structures and patterns arise. These results will be analyzed in the framework of the lubrication approximation.

  9. Forced fluid dynamics from blackfolds in general supergravity backgrounds

    NASA Astrophysics Data System (ADS)

    Armas, Jay; Gath, Jakob; Niarchos, Vasilis; Obers, Niels A.; Pedersen, Andreas Vigand

    2016-10-01

    We present a general treatment of the leading order dynamics of the collective modes of charged dilatonic p-brane solutions of (super) gravity theories in arbitrary backgrounds. To this end we employ the general strategy of the blackfold approach which is based on a long-wavelength derivative expansion around an exact or approximate solution of the (super)gravity equations of motion. The resulting collective mode equations are formulated as forced hydrodynamic equations on dynamically embedded hypersurfaces. We derive them in full generality (including all possible asymptotic fluxes and dilaton profiles) in a far-zone analysis of the (super)gravity equations and in representative examples in a near-zone analysis. An independent treatment based on the study of external couplings in hydrostatic partition functions is also presented. Special emphasis is given to the forced collective mode equations that arise in type IIA/B and eleven-dimensional supergravities, where besides the standard Lorentz force couplings our analysis reveals additional couplings to the background, including terms that arise from Chern-Simons interactions. We also present a general overview of the blackfold approach and some of the key conceptual issues that arise when applied to arbitrary backgrounds.

  10. Local Viscoelastic Properties of Live Cells Investigated Using Dynamic and Quasi-Static Atomic Force Microscopy Methods

    PubMed Central

    Cartagena, Alexander; Raman, Arvind

    2014-01-01

    The measurement of viscoelasticity of cells in physiological environments with high spatio-temporal resolution is a key goal in cell mechanobiology. Traditionally only the elastic properties have been measured from quasi-static force-distance curves using the atomic force microscope (AFM). Recently, dynamic AFM-based methods have been proposed to map the local in vitro viscoelastic properties of living cells with nanoscale resolution. However, the differences in viscoelastic properties estimated from such dynamic and traditional quasi-static techniques are poorly understood. In this work we quantitatively reconstruct the local force and dissipation gradients (viscoelasticity) on live fibroblast cells in buffer solutions using Lorentz force excited cantilevers and present a careful comparison between mechanical properties (local stiffness and damping) extracted using dynamic and quasi-static force spectroscopy methods. The results highlight the dependence of measured viscoelastic properties on both the frequency at which the chosen technique operates as well as the interactions with subcellular components beyond certain indentation depth, both of which are responsible for differences between the viscoelasticity property maps acquired using the dynamic AFM method against the quasi-static measurements. PMID:24606928

  11. Dynamic Reconstruction Algorithm of Three-Dimensional Temperature Field Measurement by Acoustic Tomography

    PubMed Central

    Li, Yanqiu; Liu, Shi; Inaki, Schlaberg H.

    2017-01-01

    Accuracy and speed of algorithms play an important role in the reconstruction of temperature field measurements by acoustic tomography. Existing algorithms are based on static models which only consider the measurement information. A dynamic model of three-dimensional temperature reconstruction by acoustic tomography is established in this paper. A dynamic algorithm is proposed considering both acoustic measurement information and the dynamic evolution information of the temperature field. An objective function is built which fuses measurement information and the space constraint of the temperature field with its dynamic evolution information. Robust estimation is used to extend the objective function. The method combines a tunneling algorithm and a local minimization technique to solve the objective function. Numerical simulations show that the image quality and noise immunity of the dynamic reconstruction algorithm are better when compared with static algorithms such as least square method, algebraic reconstruction technique and standard Tikhonov regularization algorithms. An effective method is provided for temperature field reconstruction by acoustic tomography. PMID:28895930

  12. Dynamic response of axonal microtubules under suddenly applied end forces.

    PubMed

    Manuchehrfar, Farid; Shamloo, Amir; Mehboudi, Nastaran

    2014-01-01

    Axon is a filament in neuronal system and axonal microtubules are bundles in axons. In axons, microtubules are coated with microtubule-associated protein tau, a natively unfolded profuse filamentous protein in the central nervous system. These proteins are responsible for the cross-linked structure of the axonal microtubule bundles. Through complimentary dimerization with other tau proteins, bridges are formed to nearby microtubules to create bundles. The transverse reinforcement of microtubules by cross-linking to the cytoskeleton has been shown to enhance their ability to bear compressive loads. Though microtubules are conventionally regarded as bearing compressive loads, in certain circumstances such as in traumatic stretch injury, they are placed in tension. We employ Standard Linear Solid, a viscoelastic model, to computationally simulate microtubules. This study investigates the dynamic response of two dimensional axonal microtubules under suddenly applied end forces. We obtain the results for steady state behavior of axonal microtubule for different forces.

  13. Dynamic medial patellofemoral ligament reconstruction in recurrent patellar instability: A surgical technique

    PubMed Central

    Kiran, Kopuri Ravi; Srikanth, I Muni; Chinnusamy, Lenin; Deepti, K

    2015-01-01

    The medial patellofemoral ligament (MPFL) is the primary stabilizer of the patellofemoral joint; its reconstruction has been recommended in adults over the past decade after recurrent patellar instability. However, there has been no standardized technique for reconstruction, therefore, ideal graft and technique for reconstruction are yet undetermined. However, dynamic MPFL reconstruction studies claim to be superior to other procedures as it is more anatomical. This preliminary study aims at assessing the outcomes of MPFL reconstruction in a dynamic pattern using hamstring graft. We performed this procedure in four consecutive patients with chronic patellar instability following trauma. MPFL reconstruction was done with hamstring tendons detached distally and secured to patellar periosteum after being passed through a bony tunnel in the patella without an implant and using the medial collateral ligament as a pulley. In all 4 knees, the MPFL reconstruction was isolated and was not associated with any other realignment procedures. No recurrent episodes of dislocation or subluxation were reported at 24 months followup. PMID:26806970

  14. Holocene carbon dynamics and radiative forcing of three different types of peatlands in Finland

    NASA Astrophysics Data System (ADS)

    Mathijssen, Paul; Väliranta, Minna; Lohila, Annalea; Minkkinen, Kari; Tuittila, Eeva-Stiina; Tuovinen, Juha-Pekka; Korrensalo, Aino

    2016-04-01

    Peatlands contain approximately a third of all soil carbon globally and as they exchange carbon dioxide (CO2) and methane (CH4) copiously with the atmosphere, changes in peatland carbon budgets have a large impact on the global carbon balance and the concentration of greenhouse gasses in the atmosphere. There has been a growing interest in reconstructing and linking peatland carbon dynamics to past climate variations, because quantitative reconstructions can be used as a basis for future carbon balance predictions. In order to increase our understanding on peatland development and response patterns we quantitatively reconstructed Holocene carbon dynamics of three different peatlands in Finland: a subarctic fen, a boreal peatland complex and a boreal managed pine bog. Several cores from each peatland were investigated. The peatlands showed distinct successional pathways, which were sometimes triggered by fires. Successional stages were partly reflected in carbon accumulation patterns. Sometimes variations in carbon accumulation rates coincided with autogenic changes in peat type and vegetation, but accumulation rates were also related to the large-scale Holocene climate phases. However, Holocene climate changes as such did not seem to result in changes in the peat plant species composition. The mid-Holocene warm and dry climate conditions reduced the carbon accumulation in the subarctic fen and in the fen part of the boreal peatland complex, but when the peatland was in bog phase this effect was not visible. Some bog cores showed a clear increase in carbon accumulation after fen-bog transition, but the pattern was not unanimous. In addition to carbon accumulation, we estimated past CH4 emissions for each peatland respectively by applying different methods and by utilising the established current vegetation-CH4 emission relationship. The reconstructions showed that CH4 emissions always decreased during bog stages, but that the CH4 emissions played a major role in the

  15. A modified social force model for crowd dynamics

    NASA Astrophysics Data System (ADS)

    Hassan, Ummi Nurmasyitah; Zainuddin, Zarita; Abu-Sulyman, Ibtesam M.

    2017-08-01

    The Social Force Model (SFM) is one of the most successful models in microscopic pedestrian studies that is used to study the movement of pedestrians. Many modifications have been done to improvise the SFM by earlier researchers such as the incorporation of a constant respect factor into the self-stopping mechanism. Before the new mechanism is introduced, the researchers found out that a pedestrian will immediately come to a halt if other pedestrians are near to him, which seems to be an unrealistic behavior. Therefore, researchers introduce a self-slowing mechanism to gradually stop a pedestrian when he is approaching other pedestrians. Subsequently, the dynamic respect factor is introduced into the self-slowing mechanism based on the density of the pedestrians to make the model even more realistic. In real life situations, the respect factor of the pedestrians should be dynamic values instead of a constant value. However, when we reproduce the simulation of the dynamic respect factor, we found that the movement of the pedestrians are unrealistic because the pedestrians are lacking perception of the pedestrians in front of him. In this paper, we adopted both dynamic respect factor and dynamic angular parameter, called modified dynamic respect factor, which is dependent on the density of the pedestrians. Simulations are performed in a normal unidirectional walkway to compare the simulated pedestrians' movements produced by both models. The results obtained showed that the modified dynamic respect factor produces more realistic movement of the pedestrians which conform to the real situation. Moreover, we also found that the simulations endow the pedestrian with a self-slowing mechanism and a perception of other pedestrians in front of him.

  16. Magnetostriction-driven cantilevers for dynamic atomic force microscopy

    NASA Astrophysics Data System (ADS)

    Penedo, M.; Fernández-Martínez, I.; Costa-Krämer, J. L.; Luna, M.; Briones, F.

    2009-10-01

    An actuation mode is presented to drive the mechanical oscillation of cantilevers for dynamic atomic force microscopy. The method is based on direct mechanical excitation of the cantilevers coated with amorphous Fe-B-N thin films, by means of the film magnetostriction, i.e., the dimensional change in the film when magnetized. These amorphous magnetostrictive Fe-B-N thin films exhibit soft magnetic properties, excellent corrosion resistance in liquid environments, nearly zero accumulated stress when properly deposited, and good chemical stability. We present low noise and high resolution topographic images acquired in liquid environment to demonstrate the method capability.

  17. Dynamic behavior of a beam drag-force anemometer

    NASA Technical Reports Server (NTRS)

    Fralick, G. C.

    1980-01-01

    A cantilevered beam with strain gages attached to the fixed ends and the minimax technique were used in an experiment conducted to determine the dynamic behavior of a drag-force anemometer in high frequency, unsteady flow. In steady flow the output of the anemometer is proportional to stream velocity head and flow angle. Fluid mechanics suggests that, in unsteady flow, the output would also be proportional to the rate of change of fluid velocity. It was determined that effects due to the rate of change of fluid velocity are negligible for the probe geometry and frequencies involved.

  18. A stochastic boundary forcing for dissipative particle dynamics

    NASA Astrophysics Data System (ADS)

    Altenhoff, Adrian M.; Walther, Jens H.; Koumoutsakos, Petros

    2007-07-01

    The method of dissipative particle dynamics (DPD) is an effective, coarse grained model of the hydrodynamics of complex fluids. DPD simulations of wall-bounded flows are however often associated with spurious fluctuations of the fluid properties near the wall. We present a novel stochastic boundary forcing for DPD simulations of wall-bounded flows, based on the identification of fluctuations in simulations of the corresponding homogeneous system at equilibrium. The present method is shown to enforce accurately the no-slip boundary condition, while minimizing spurious fluctuations of material properties, in a number of benchmark problems.

  19. 3.5D dynamic PET image reconstruction incorporating kinetics-based clusters

    PubMed Central

    Lu, Lijun; Karakatsanis, Nicolas A.; Tang, Jing; Chen, Wufan; Rahmim, Arman

    2012-01-01

    Standard 3D dynamic PET imaging consists of independent image reconstructions of individual frames followed by application of appropriate kinetic model to the time activity curves (TACs) at the voxel or region-of-interest. The emerging field of 4D PET reconstruction, by contrast, seeks to move beyond this scheme and incorporate information from multiple frames within the image reconstruction task. Here we propose a novel reconstruction framework aiming to enhance quantitative accuracy of parametric images via introduction of priors based on voxel kinetics, as generated via clustering of preliminary reconstructed dynamic images to define clustered neighborhoods of voxels with similar kinetics. This is then followed by straightforward maximum a posterior (MAP) 3D PET reconstruction as applied to individual frames; and as such the method is labeled “3.5D” image reconstruction. The use of cluster-based priors has the advantage of further enhancing quantitative performance in dynamic PET imaging, because: (a) there are typically more voxels in clusters than in conventional local neighborhoods, and (b) neighboring voxels with distinct kinetics are less likely to be clustered together. Using realistic simulated 11C-raclopride dynamic PET data, the quantitative performance of the proposed method was investigated. Parametric distribution-volume (DV) and DV ratio (DVR) images were estimated from dynamic image reconstructions using (a) MLEM, and MAP reconstructions using (b) the quadratic prior (QP-MAP), (c) the Green prior (GP-MAP) and (d, e) two proposed cluster-based priors (CP-U-MAP and CP-W-MAP), followed by graphical modeling, and were qualitatively and quantitatively compared for 11 regions-of-interest (ROIs). Overall, the proposed dynamic PET reconstruction methodology resulted in substantial visual as well as quantitative accuracy improvements (in terms of noise vs. bias performance) for parametric DV and DVR images. The method was also tested on a 90 min 11C

  20. 3.5D dynamic PET image reconstruction incorporating kinetics-based clusters.

    PubMed

    Lu, Lijun; Karakatsanis, Nicolas A; Tang, Jing; Chen, Wufan; Rahmim, Arman

    2012-08-07

    Standard 3D dynamic positron emission tomographic (PET) imaging consists of independent image reconstructions of individual frames followed by application of appropriate kinetic model to the time activity curves at the voxel or region-of-interest (ROI). The emerging field of 4D PET reconstruction, by contrast, seeks to move beyond this scheme and incorporate information from multiple frames within the image reconstruction task. Here we propose a novel reconstruction framework aiming to enhance quantitative accuracy of parametric images via introduction of priors based on voxel kinetics, as generated via clustering of preliminary reconstructed dynamic images to define clustered neighborhoods of voxels with similar kinetics. This is then followed by straightforward maximum a posteriori (MAP) 3D PET reconstruction as applied to individual frames; and as such the method is labeled '3.5D' image reconstruction. The use of cluster-based priors has the advantage of further enhancing quantitative performance in dynamic PET imaging, because: (a) there are typically more voxels in clusters than in conventional local neighborhoods, and (b) neighboring voxels with distinct kinetics are less likely to be clustered together. Using realistic simulated (11)C-raclopride dynamic PET data, the quantitative performance of the proposed method was investigated. Parametric distribution-volume (DV) and DV ratio (DVR) images were estimated from dynamic image reconstructions using (a) maximum-likelihood expectation maximization (MLEM), and MAP reconstructions using (b) the quadratic prior (QP-MAP), (c) the Green prior (GP-MAP) and (d, e) two proposed cluster-based priors (CP-U-MAP and CP-W-MAP), followed by graphical modeling, and were qualitatively and quantitatively compared for 11 ROIs. Overall, the proposed dynamic PET reconstruction methodology resulted in substantial visual as well as quantitative accuracy improvements (in terms of noise versus bias performance) for parametric DV and

  1. Three Dimensional Imaging of Ventilation Dynamics in Asthmatics Using Multi-echo Projection Acquisition with Constrained Reconstruction

    PubMed Central

    Holmes, James H.; O’Halloran, Rafael L.; Brodsky, Ethan K.; Bley, Thorsten A.; Francois, Christopher J.; Velikina, Julia V.; Sorkness, Ronald L.; Busse, William W.; Fain, Sean B.

    2010-01-01

    The purpose of this work is to detect dynamic gas trapping in 3-dimensions during forced exhalation at isotropic high spatial resolution and high temporal resolution using hyperpolarized helium-3 (HPHe-3) MRI. Ten subjects underwent HPHe-3 MRI and MDCT. MRI was performed throughout inspiration, breath-hold, and forced expiration. A multi-echo 3D projection acquisition was used to improve data collection efficiency and an iterative constrained reconstruction (I-HYPR) was implemented to improve SNR and increase robustness to motion. Two radiologists evaluated the dynamic MRI and breath-held MDCT data for gas and air trapping respectively. Phantom studies showed the proposed technique significantly improved depiction of moving objects compared to view-sharing methods. Gas trapping was detected using MRI in 5 of the 6 asthmatic subjects who displayed air trapping with MDCT. Locations in disagreement were found to represent small to moderate regions of air trapping. The proposed technique provides whole lung 3D imaging of respiration dynamics at high spatial and temporal resolution and compares well to the current standard, MDCT. While MDCT can provide information about static regional air trapping, it is unable to depict dynamics in a setting more comparable to a spirometry maneuver and explore the longitudinal time evolution of the trapped regions. PMID:19785015

  2. The effect of graft fixation sequence on force distribution in double-bundle anterior cruciate ligament reconstruction

    PubMed Central

    Chen, Chih-Hui; Gadikota, Hemanth R.; Gill, Thomas J.

    2011-01-01

    Purpose This paper investigated the effect of graft fixation sequence on knee joint biomechanics after a double-bundle ACL reconstruction. Method Two independently published biomechanical studies that investigated the biomechanics of double-bundle ACL reconstructions using similar robotic testing systems were compared. In each study, ten human cadaveric knees were tested under three different conditions: intact, ACL deficient, and ACL reconstructed using a double-bundle technique with the anteromedial (AM) graft fixed at 60° of flexion and the posterolateral (PL) graft fixed at full extension. In one study (Study A), the AM graft was fixed first; while in another study (Study B), the PL graft was fixed first. Knee kinematics, in situ forces of the ACL and the ACL grafts were measured under two loading conditions: an anterior tibial load of 134 N and a combined tibial torques (10 N·m valgus and 5 N·m internal tibial torques) in both studies. Result When AM graft was fixed first, the in situ force of the AM graft was lower than the native AM bundle at all flexion angles. The in situ force in the PL graft, however, was higher than the native PL bundle at all flexion angles. When the PL graft was fixed first, the in situ force of the AM graft was higher than the native AM bundle, while the in situ forces of the PL graft were lower than the native PL bundle at all flexion angles. Both studies demonstrated that the double-bundle ACL reconstructions can closely restore the normal knee joint kinematics. Conclusion Even though the grafts were fixed using similar initial tensions and at same flexion angles, the sequence of fixing the two grafts in a double-bundle ACL reconstruction could alter the in situ forces in the grafts and affect the knee kinematics. These data imply that in clinical application of a double-bundle ACL reconstruction, the sequence of graft fixation should be an important surgical parameter. PMID:21082163

  3. Molecular Dynamics Simulation of Nitrobenzene Dioxygenase Using AMBER Force Field

    PubMed Central

    2015-01-01

    Molecular dynamics simulation of the oxygenase component of nitrobenzene dioxygenase (NBDO) system, a member of the naphthalene family of Rieske nonheme iron dioxygenases, has been carried out using the AMBER force field combined with a new set of parameters for the description of the mononuclear nonheme iron center and iron–sulfur Rieske cluster. Simulation results provide information on the structure and dynamics of nitrobenzene dioxygenase in an aqueous environment and shed light on specific interactions that occur in its catalytic center. The results suggest that the architecture of the active site is stabilized by key hydrogen bonds, and Asn258 positions the substrate for oxidation. Analysis of protein–water interactions reveal the presence of a network of solvent molecules at the entrance to the active site, which could be of potential catalytic importance. PMID:24955078

  4. A Minimum Fuel Based Estimator for Maneuver and Natrual Dynamics Reconstruction

    NASA Astrophysics Data System (ADS)

    Lubey, D.; Scheeres, D.

    2013-09-01

    The vast and growing population of objects in Earth orbit (active and defunct spacecraft, orbital debris, etc.) offers many unique challenges when it comes to tracking these objects and associating the resulting observations. Complicating these challenges are the inaccurate natural dynamical models of these objects, the active maneuvers of spacecraft that deviate them from their ballistic trajectories, and the fact that spacecraft are tracked and operated by separate agencies. Maneuver detection and reconstruction algorithms can help with each of these issues by estimating mismodeled and unmodeled dynamics through indirect observation of spacecraft. It also helps to verify the associations made by an object correlation algorithm or aid in making those associations, which is essential when tracking objects in orbit. The algorithm developed in this study applies an Optimal Control Problem (OCP) Distance Metric approach to the problems of Maneuver Reconstruction and Dynamics Estimation. This was first developed by Holzinger, Scheeres, and Alfriend (2011), with a subsequent study by Singh, Horwood, and Poore (2012). This method estimates the minimum fuel control policy rather than the state as a typical Kalman Filter would. This difference ensures that the states are connected through a given dynamical model and allows for automatic covariance manipulation, which can help to prevent filter saturation. Using a string of measurements (either verified or hypothesized to correlate with one another), the algorithm outputs a corresponding string of adjoint and state estimates with associated noise. Post-processing techniques are implemented, which when applied to the adjoint estimates can remove noise and expose unmodeled maneuvers and mismodeled natural dynamics. Specifically, the estimated controls are used to determine spacecraft dependent accelerations (atmospheric drag and solar radiation pressure) using an adapted form of the Optimal Control based natural dynamics

  5. Design and testing of magnetorheological valve with fast force response time and great dynamic force range

    NASA Astrophysics Data System (ADS)

    Kubík, M.; Macháček, O.; Strecker, Z.; Roupec, J.; Mazůrek, I.

    2017-04-01

    The paper deals with design, simulation and experimental testing of a magnetorheological (MR) valve with short response time. The short response time is achieved by a suitable design of an active zone in combination with use of a ferrite material for magnetic circuit. The magneto-static model and the simplified hydraulic model of the MR valve are examined and experimentally verified. The development the MR valve achieves an average response time 4.1 ms and the maximum dynamic force range of eight.

  6. Replicator dynamics with alternate growth functions, delay, and quasiperiodic forcing

    NASA Astrophysics Data System (ADS)

    Wesson, Elizabeth Nicholas

    Evolutionary dynamics combines game theory and nonlinear dynamics to model competition in biological and social situations. The replicator equation is a standard paradigm in evolutionary dynamics. The growth rate of each strategy is its excess fitness: the deviation of its fitness from the average. The gametheoretic aspect of the model lies in the choice of fitness function, which is determined by a payoff matrix. Two well-known replicator systems are the threestrategy Rock-Paper-Scissors game and the two-strategy Hawk-Dove game. In this work, we analyze the dynamics of replicator systems with three different types of modifications. The first generalization of the replicator model is given by considering alternate growth functions. We find that in the Rock-Paper-Scissors game with a logistic growth function, there are several fixed points that do not exist in the standard replicator model. The system exhibits both periodic motion and convergence to attractors. We also analyze replicator systems with delayed interactions between strategies. We consider a symmetric delay model, in which the fitness of each strategy is its expected payoff delayed by a time interval; and an asymmetric model, in which same-strategy terms appearing in the fitness of a given strategy are not delayed. In both cases, limit cycles arise that cannot occur in the usual replicator model. Finally, we examine Rock-Paper-Scissors systems with quasiperiodic forcing of the payoff coefficients. This model may represent systems in which the competition is affected by cyclical processes on different time-scales. We find that the stability of the equilibrium state depends sensitively on the two forcing frequencies; in fact, the region of stability has fractal boundary.

  7. Dynamic DNA Origami Device for Measuring Compressive Depletion Forces.

    PubMed

    Hudoba, Michael W; Luo, Yi; Zacharias, Angelita; Poirier, Michael G; Castro, Carlos E

    2017-07-25

    The ability to self-assemble nanodevices with programmed structural dynamics that can sense and respond to the local environment could enable transformative applications in fields including molecular robotics, nanomanufacturing, and nanomedicine. The responsive function of biomolecules is often driven by alterations in conformational distributions mediated by highly sensitive interactions with the local environment. Here, we mimic this approach by engineering inherent nanoscale structural dynamics (nanodynamics) into a DNA device that exhibits a distribution of conformations including two stable states separated by a transition state where the energy barrier height is on the scale of the thermal energy, kBT = 4.1 pN·nm, enabling spontaneous transitions between states. We further establish design principles to regulate the equilibrium and kinetic behavior by substituting a few DNA strand components. We use single-molecule Förster resonance energy transfer measurements to show these nanodynamic properties are sensitive to sub-piconewton depletion forces in the presence of molecular crowding agents, and the device can measure depletion forces with a resolution of ∼100 fN. We anticipate that this approach of engineering nanodynamic DNA devices will enable molecular-scale systems that sense and respond to their local environment with extremely high sensitivity.

  8. Reconstruction of dark energy and expansion dynamics using Gaussian processes

    SciTech Connect

    Seikel, Marina; Clarkson, Chris; Smith, Mathew E-mail: chris.clarkson@uct.ac.za

    2012-06-01

    An important issue in cosmology is reconstructing the effective dark energy equation of state directly from observations. With few physically motivated models, future dark energy studies cannot only be based on constraining a dark energy parameter space, as the errors found depend strongly on the parametrisation considered. We present a new non-parametric approach to reconstructing the history of the expansion rate and dark energy using Gaussian Processes, which is a fully Bayesian approach for smoothing data. We present a pedagogical introduction to Gaussian Processes, and discuss how it can be used to robustly differentiate data in a suitable way. Using this method we show that the Dark Energy Survey - Supernova Survey (DES) can accurately recover a slowly evolving equation of state to σ{sub w} = ±0.05 (95% CL) at z = 0 and ±0.25 at z = 0.7, with a minimum error of ±0.025 at the sweet-spot at z ∼ 0.16, provided the other parameters of the model are known. Errors on the expansion history are an order of magnitude smaller, yet make no assumptions about dark energy whatsoever. A code for calculating functions and their first three derivatives using Gaussian processes has been developed and is available for download.

  9. Force Generation, Polymerization Dynamics and Nucleation of Actin Filaments

    NASA Astrophysics Data System (ADS)

    Wang, Ruizhe

    We study force generation and actin filament dynamics using stochastic and deterministic methods. First, we treat force generation of bundled actin filaments by polymerization via molecular-level stochastic simulations. In the widely-used Brownian Ratchet model, actin filaments grow freely whenever the tip-obstacle gap created by thermal fluctuation exceeds the monomer size. We name this model the Perfect Brownian Ratchet (PBR) model. In the PBR model, actin monomer diffusion is treated implicitly. We perform a series of simulations based on the PBR, in which obstacle motion is treated explicitly; in most previous studies, obstacle motion has been treated implicitly. We find that the cooperativity of filaments is generally weak in the PBR model, meaning that more filaments would grow more slowly given the same force per filament. Closed-form formulas are also developed, which match the simulation results. These portable and accurate formulas provide guidance for experiments and upper and lower bounds for theoretical analyses. We also studied a variation of the PBR, called the Diffusing Brownian Ratchet (DBR) model, in which both actin monomer and obstacle diffusion are treated explicitly. We find that the growth rate of multiple filaments is even lower, compared with that in PBR. This finding challenges the widely-accepted PBR assumption and suggests that pushing the study of actin dynamics down to the sub-nanometer level yields new insights. We subsequently used a rate equation approach to model the effect of local depletion of actin monomers on the nucleation of actin filaments on biomimetic beads, and how the effect is regulated by capping protein (CP). We find that near the bead surface, a higher CP concentration increases local actin concentration, which leads to an enhanced activities of actin filaments' nucleation. Our model analysis matches the experimental results and lends support to an important but undervalued hypothesis proposed by Carlier and

  10. Measurement of dynamic cell-induced 3D displacement fields in vitro for traction force optical coherence microscopy.

    PubMed

    Mulligan, Jeffrey A; Bordeleau, François; Reinhart-King, Cynthia A; Adie, Steven G

    2017-02-01

    Traction force microscopy (TFM) is a method used to study the forces exerted by cells as they sense and interact with their environment. Cell forces play a role in processes that take place over a wide range of spatiotemporal scales, and so it is desirable that TFM makes use of imaging modalities that can effectively capture the dynamics associated with these processes. To date, confocal microscopy has been the imaging modality of choice to perform TFM in 3D settings, although multiple factors limit its spatiotemporal coverage. We propose traction force optical coherence microscopy (TF-OCM) as a novel technique that may offer enhanced spatial coverage and temporal sampling compared to current methods used for volumetric TFM studies. Reconstructed volumetric OCM data sets were used to compute time-lapse extracellular matrix deformations resulting from cell forces in 3D culture. These matrix deformations revealed clear differences that can be attributed to the dynamic forces exerted by normal versus contractility-inhibited NIH-3T3 fibroblasts embedded within 3D Matrigel matrices. Our results are the first step toward the realization of 3D TF-OCM, and they highlight the potential use of OCM as a platform for advancing cell mechanics research.

  11. Measurement of dynamic cell-induced 3D displacement fields in vitro for traction force optical coherence microscopy

    PubMed Central

    Mulligan, Jeffrey A.; Bordeleau, François; Reinhart-King, Cynthia A.; Adie, Steven G.

    2017-01-01

    Traction force microscopy (TFM) is a method used to study the forces exerted by cells as they sense and interact with their environment. Cell forces play a role in processes that take place over a wide range of spatiotemporal scales, and so it is desirable that TFM makes use of imaging modalities that can effectively capture the dynamics associated with these processes. To date, confocal microscopy has been the imaging modality of choice to perform TFM in 3D settings, although multiple factors limit its spatiotemporal coverage. We propose traction force optical coherence microscopy (TF-OCM) as a novel technique that may offer enhanced spatial coverage and temporal sampling compared to current methods used for volumetric TFM studies. Reconstructed volumetric OCM data sets were used to compute time-lapse extracellular matrix deformations resulting from cell forces in 3D culture. These matrix deformations revealed clear differences that can be attributed to the dynamic forces exerted by normal versus contractility-inhibited NIH-3T3 fibroblasts embedded within 3D Matrigel matrices. Our results are the first step toward the realization of 3D TF-OCM, and they highlight the potential use of OCM as a platform for advancing cell mechanics research. PMID:28271010

  12. Reduced step length reduces knee joint contact forces during running following anterior cruciate ligament reconstruction but does not alter inter-limb asymmetry.

    PubMed

    Bowersock, Collin D; Willy, Richard W; DeVita, Paul; Willson, John D

    2017-03-01

    Anterior cruciate ligament reconstruction is associated with early onset knee osteoarthritis. Running is a typical activity following this surgery, but elevated knee joint contact forces are thought to contribute to osteoarthritis degenerative processes. It is therefore clinically relevant to identify interventions to reduce contact forces during running among individuals after anterior cruciate ligament reconstruction. The primary purpose of this study was to evaluate the effect of reducing step length during running on patellofemoral and tibiofemoral joint contact forces among people with a history of anterior cruciate ligament reconstruction. Inter limb knee joint contact force differences during running were also examined. 18 individuals at an average of 54.8months after unilateral anterior cruciate ligament reconstruction ran in 3 step length conditions (preferred, -5%, -10%). Bilateral patellofemoral, tibiofemoral, and medial tibiofemoral compartment peak force, loading rate, impulse, and impulse per kilometer were evaluated between step length conditions and limbs using separate 2 factor analyses of variance. Reducing step length 5% decreased patellofemoral, tibiofemoral, and medial tibiofemoral compartment peak force, impulse, and impulse per kilometer bilaterally. A 10% step length reduction further decreased peak forces and force impulses, but did not further reduce force impulses per kilometer. Tibiofemoral joint impulse, impulse per kilometer, and patellofemoral joint loading rate were lower in the previously injured limb compared to the contralateral limb. Running with a shorter step length is a feasible clinical intervention to reduce knee joint contact forces during running among people with a history of anterior cruciate ligament reconstruction. Copyright © 2017 Elsevier Ltd. All rights reserved.

  13. HYPR: constrained reconstruction for enhanced SNR in dynamic medical imaging

    NASA Astrophysics Data System (ADS)

    Mistretta, C.; Wieben, O.; Velikina, J.; Wu, Y.; Johnson, K.; Korosec, F.; Unal, O.; Chen, G.; Fain, S.; Christian, B.; Nalcioglu, O.; Kruger, R. A.; Block, W.; Samsonov, A.; Speidel, M.; Van Lysel, M.; Rowley, H.; Supanich, M.; Turski, P.; Wu, Yan; Holmes, J.; Kecskemeti, S.; Moran, C.; O'Halloran, R.; Keith, L.; Alexander, A.; Brodsky, E.; Lee, J. E.; Hall, T.; Zagzebski, J.

    2008-03-01

    During the last eight years our group has developed radial acquisitions with angular undersampling factors of several hundred that accelerate MRI in selected applications. As with all previous acceleration techniques, SNR typically falls as least as fast as the inverse square root of the undersampling factor. This limits the SNR available to support the small voxels that these methods can image over short time intervals in applications like time-resolved contrast-enhanced MR angiography (CE-MRA). Instead of processing each time interval independently, we have developed constrained reconstruction methods that exploit the significant correlation between temporal sampling points. A broad class of methods, termed HighlY Constrained Back PRojection (HYPR), generalizes this concept to other modalities and sampling dimensions.

  14. Dynamic Data-Driven Event Reconstruction for Atmospheric Releases

    SciTech Connect

    Sugiyama, G; Kosovic, B; Hanley, W; Johannesson, G; Larsen, S; Loosmore, G; Lundquist, J; Mirin, A; Nitao, J; Serban, R; Dyer, K

    2004-10-13

    For atmospheric releases, event reconstruction answers the critical questions - How much material was released? When? Where? and What are the potential consequences? Inaccurate estimation of the source term can lead to gross errors, time delays during a crisis, and even fatalities. We are developing a capability that seamlessly integrates observational data streams with predictive models in order to provide the best possible estimates of unknown source term parameters, as well as optimal and timely situation analyses consistent with both models and data. Our approach utilizes Bayesian inference and stochastic sampling methods (Markov Chain and Sequential Monte Carlo) to reformulate the inverse problem into a solution based on efficient sampling of an ensemble of predictive simulations, guided by statistical comparisons with data.

  15. Plasma Motions and Turbulent Magnetic Diffusivity of Active Region AR 12158 Using a Minimum Energy Functional and Non-Force-Free Reconstructions of Vector Magnetograms

    NASA Astrophysics Data System (ADS)

    Tremblay, Benoit; Vincent, Alain

    2017-01-01

    We present a generalization of the resistive minimum-energy fit (MEF-R: Tremblay and Vincent, Solar Phys. 290, 437, 2015) for non-force-free (NFF) magnetic fields. In MEF-R, an extremum principle is used to infer two-dimensional maps of plasma motions [boldsymbol{v}(x,y)] and magnetic eddy diffusivity [η _{eddy}(x,y)] at the photosphere. These reconstructions could be used as boundary conditions in data-driven simulations or in data assimilation. The algorithm is validated using the analytical model of a resistive expanding spheromak by Rakowski, Laming, and Lyutikov ( Astrophys. J. 730, 30, 2011). We study the flaring Active Region AR 12158 using a series of magnetograms and Dopplergrams provided by the Helioseismic and Magnetic Imager (HMI) onboard the Solar Dynamics Observatory (SDO). The results are discussed for a non-force-free magnetic-field reconstruction [boldsymbol{B}_{NFF}] (Hu and Dasgupta in Solar Phys. 247, 87, 2008). We found that the vertical plasma velocities [vz(x,y)] inferred using MEF-R are very similar to the observed Doppler velocities [vr(x,y)]. Finally, we study the potential spatial correlation between microturbulent velocities and significant values of η_{eddy}(x,y).

  16. Bayer patterned high dynamic range image reconstruction using adaptive weighting function

    NASA Astrophysics Data System (ADS)

    Kang, Hee; Lee, Suk Ho; Song, Ki Sun; Kang, Moon Gi

    2014-12-01

    It is not easy to acquire a desired high dynamic range (HDR) image directly from a camera due to the limited dynamic range of most image sensors. Therefore, generally, a post-process called HDR image reconstruction is used, which reconstructs an HDR image from a set of differently exposed images to overcome the limited dynamic range. However, conventional HDR image reconstruction methods suffer from noise factors and ghost artifacts. This is due to the fact that the input images taken with a short exposure time contain much noise in the dark regions, which contributes to increased noise in the corresponding dark regions of the reconstructed HDR image. Furthermore, since input images are acquired at different times, the images contain different motion information, which results in ghost artifacts. In this paper, we propose an HDR image reconstruction method which reduces the impact of the noise factors and prevents ghost artifacts. To reduce the influence of the noise factors, the weighting function, which determines the contribution of a certain input image to the reconstructed HDR image, is designed to adapt to the exposure time and local motions. Furthermore, the weighting function is designed to exclude ghosting regions by considering the differences of the luminance and the chrominance values between several input images. Unlike conventional methods, which generally work on a color image processed by the image processing module (IPM), the proposed method works directly on the Bayer raw image. This allows for a linear camera response function and also improves the efficiency in hardware implementation. Experimental results show that the proposed method can reconstruct high-quality Bayer patterned HDR images while being robust against ghost artifacts and noise factors.

  17. Adaptive pulsed laser line extraction for terrain reconstruction using a dynamic vision sensor

    PubMed Central

    Brandli, Christian; Mantel, Thomas A.; Hutter, Marco; Höpflinger, Markus A.; Berner, Raphael; Siegwart, Roland; Delbruck, Tobi

    2014-01-01

    Mobile robots need to know the terrain in which they are moving for path planning and obstacle avoidance. This paper proposes the combination of a bio-inspired, redundancy-suppressing dynamic vision sensor (DVS) with a pulsed line laser to allow fast terrain reconstruction. A stable laser stripe extraction is achieved by exploiting the sensor's ability to capture the temporal dynamics in a scene. An adaptive temporal filter for the sensor output allows a reliable reconstruction of 3D terrain surfaces. Laser stripe extractions up to pulsing frequencies of 500 Hz were achieved using a line laser of 3 mW at a distance of 45 cm using an event-based algorithm that exploits the sparseness of the sensor output. As a proof of concept, unstructured rapid prototype terrain samples have been successfully reconstructed with an accuracy of 2 mm. PMID:24478619

  18. Adaptive pulsed laser line extraction for terrain reconstruction using a dynamic vision sensor.

    PubMed

    Brandli, Christian; Mantel, Thomas A; Hutter, Marco; Höpflinger, Markus A; Berner, Raphael; Siegwart, Roland; Delbruck, Tobi

    2013-01-01

    Mobile robots need to know the terrain in which they are moving for path planning and obstacle avoidance. This paper proposes the combination of a bio-inspired, redundancy-suppressing dynamic vision sensor (DVS) with a pulsed line laser to allow fast terrain reconstruction. A stable laser stripe extraction is achieved by exploiting the sensor's ability to capture the temporal dynamics in a scene. An adaptive temporal filter for the sensor output allows a reliable reconstruction of 3D terrain surfaces. Laser stripe extractions up to pulsing frequencies of 500 Hz were achieved using a line laser of 3 mW at a distance of 45 cm using an event-based algorithm that exploits the sparseness of the sensor output. As a proof of concept, unstructured rapid prototype terrain samples have been successfully reconstructed with an accuracy of 2 mm.

  19. Direct parametric reconstruction in dynamic PET myocardial perfusion imaging: in vivo studies

    NASA Astrophysics Data System (ADS)

    Petibon, Yoann; Rakvongthai, Yothin; El Fakhri, Georges; Ouyang, Jinsong

    2017-05-01

    Dynamic PET myocardial perfusion imaging (MPI) used in conjunction with tracer kinetic modeling enables the quantification of absolute myocardial blood flow (MBF). However, MBF maps computed using the traditional indirect method (i.e. post-reconstruction voxel-wise fitting of kinetic model to PET time-activity-curves-TACs) suffer from poor signal-to-noise ratio (SNR). Direct reconstruction of kinetic parameters from raw PET projection data has been shown to offer parametric images with higher SNR compared to the indirect method. The aim of this study was to extend and evaluate the performance of a direct parametric reconstruction method using in vivo dynamic PET MPI data for the purpose of quantifying MBF. Dynamic PET MPI studies were performed on two healthy pigs using a Siemens Biograph mMR scanner. List-mode PET data for each animal were acquired following a bolus injection of ~7-8 mCi of 18F-flurpiridaz, a myocardial perfusion agent. Fully-3D dynamic PET sinograms were obtained by sorting the coincidence events into 16 temporal frames covering ~5 min after radiotracer administration. Additionally, eight independent noise realizations of both scans—each containing 1/8th of the total number of events—were generated from the original list-mode data. Dynamic sinograms were then used to compute parametric maps using the conventional indirect method and the proposed direct method. For both methods, a one-tissue compartment model accounting for spillover from the left and right ventricle blood-pools was used to describe the kinetics of 18F-flurpiridaz. An image-derived arterial input function obtained from a TAC taken in the left ventricle cavity was used for tracer kinetic analysis. For the indirect method, frame-by-frame images were estimated using two fully-3D reconstruction techniques: the standard ordered subset expectation maximization (OSEM) reconstruction algorithm on one side, and the one-step late maximum a posteriori (OSL-MAP) algorithm on the other

  20. Comparison study of temporal regularization methods for fully 5D reconstruction of cardiac gated dynamic SPECT

    NASA Astrophysics Data System (ADS)

    Niu, Xiaofeng; Yang, Yongyi; King, Michael A.

    2012-09-01

    Temporal regularization plays a critical role in cardiac gated dynamic SPECT reconstruction, of which the goal is to obtain an image sequence from a single acquisition which simultaneously shows both cardiac motion and tracer distribution change over the course of imaging (termed 5D). In our recent work, we explored two different approaches for temporal regularization of the dynamic activities in gated dynamic reconstruction without the use of fast camera rotation: one is the dynamic EM (dEM) approach which is imposed on the temporal trend of the time activity of each voxel, and the other is a B-spline modeling approach in which the time activity is regulated by a set of B-spline basis functions. In this work, we extend the B-spline approach to fully 5D reconstruction and conduct a thorough quantitative comparison with the dEM approach. In the evaluation of the reconstruction results, we apply a number of quantitative measures on two major aspects of the reconstructed dynamic images: (1) the accuracy of the reconstructed activity distribution in the myocardium and (2) the ability of the reconstructed dynamic activities to differentiate perfusion defects from normal myocardial wall uptake. These measures include the mean square error (MSE), bias-variance analysis, accuracy of time-activity curves (TAC), contrast-to-noise ratio of a defect, composite kinetic map of the left ventricle wall and perfusion defect detectability with channelized Hotelling observer. In experiments, we simulated cardiac gated imaging with the NURBS-based cardiac-torso phantom and Tc99m-Teboroxime as the imaging agent, where acquisition with the equivalent of only three full camera rotations was used during the imaging period. The results show that both dEM and B-spline 5D could achieve similar overall accuracy in the myocardium in terms of MSE. However, compared to dEM 5D, the B-spline approach could achieve a more accurate reconstruction of the voxel TACs; in particular, B-spline 5D could

  1. The Effects of Balance Training on Static and Dynamic Postural Stability Indices After Acute ACL Reconstruction

    PubMed Central

    Akbari, Asghar; Ghiasi, Fateme; Mir, Mohsen; Hosseinifar, Mohammad

    2016-01-01

    Background: Proprioception and postural stability play an important role in knee movements. However, there are controversies about the overall recovery time of proprioception following knee surgery and onset of balance and neuromuscular training after ACL reconstruction. Therefore, it is necessary to evaluate the effect of balance training in early stage of knee rehabilitation after anterior cruciate ligament (ACL) reconstruction. The purpose of this study was to evaluate the effect of balance exercises on postural stability indices in subjects with anterior cruciate ligament (ACL) reconstruction. Methods: The study was a controlled randomized trial study. Twenty four patients who had ACL reconstructed (balance training group) and twenty four healthy adults without any knee injury (control group) were recruited in the study. The balance exercises group performed balance exercises for 2 weeks. Before and after the interventions, overall, anteroposterior, and mediolateral stability indices were measured with a Biodex Balance System in bilateral and unilateral stance positions with the eyes open and closed. T-tests were used for statistical analysis (p<0.05). Results: Results showed that amount of static stability indices did not change after training and there were not significant differences in static stability indices before and after balance training (p>0.05). Although amount of dynamic stability indices decreased, there were not significant differences in dynamic stability indices before and after balance training (p>0.05). Amount of dynamic stability indices were decreased in balance training group, however, there were not significant differences between groups (p>0.05). Conclusion: These results support that balance exercise could partially improved dynamic stability indices in early stage of ACL reconstruction rehabilitation. The results of this study suggest that balance exercises should be part of the rehabilitation program following ACL reconstruction. PMID

  2. Rapid 3D dynamic arterial spin labeling with a sparse model-based image reconstruction.

    PubMed

    Zhao, Li; Fielden, Samuel W; Feng, Xue; Wintermark, Max; Mugler, John P; Meyer, Craig H

    2015-11-01

    Dynamic arterial spin labeling (ASL) MRI measures the perfusion bolus at multiple observation times and yields accurate estimates of cerebral blood flow in the presence of variations in arterial transit time. ASL has intrinsically low signal-to-noise ratio (SNR) and is sensitive to motion, so that extensive signal averaging is typically required, leading to long scan times for dynamic ASL. The goal of this study was to develop an accelerated dynamic ASL method with improved SNR and robustness to motion using a model-based image reconstruction that exploits the inherent sparsity of dynamic ASL data. The first component of this method is a single-shot 3D turbo spin echo spiral pulse sequence accelerated using a combination of parallel imaging and compressed sensing. This pulse sequence was then incorporated into a dynamic pseudo continuous ASL acquisition acquired at multiple observation times, and the resulting images were jointly reconstructed enforcing a model of potential perfusion time courses. Performance of the technique was verified using a numerical phantom and it was validated on normal volunteers on a 3-Tesla scanner. In simulation, a spatial sparsity constraint improved SNR and reduced estimation errors. Combined with a model-based sparsity constraint, the proposed method further improved SNR, reduced estimation error and suppressed motion artifacts. Experimentally, the proposed method resulted in significant improvements, with scan times as short as 20s per time point. These results suggest that the model-based image reconstruction enables rapid dynamic ASL with improved accuracy and robustness.

  3. Vertically polarizing undulator with dynamic compensation of magnetic forces

    NASA Astrophysics Data System (ADS)

    Strelnikov, N.; Vasserman, I.; Xu, J.; Jensen, D.; Schmidt, O.; Trakhtenberg, E.; Suthar, K.; Moog, E. R.; Pile, G.; Gluskin, E.

    2017-01-01

    As part of the R&D program of the LCLS-II project, a novel 3.4-meter-long undulator prototype with horizontal magnetic field and dynamic force compensation has recently been developed at the Advanced Photon Source (APS). Previous steps in this development were the shorter 0.8-meter-long and 2.8-meter-long prototypes. Extensive mechanical and magnetic testing were carried out for each prototype, and each prototype was magnetically tuned using magnetic shims. The resulting performance of the 3.4-meter-long undulator prototype meets all requirements for the LCLS-II insertion device, including limits on the field integrals, phase errors, higher-order magnetic moments, and electron-beam trajectory for all operational gaps, as well as the reproducibility and accuracy of the gap settings.

  4. Molecular dynamics simulation of amplitude modulation atomic force microscopy.

    PubMed

    Hu, Xiaoli; Egberts, Philip; Dong, Yalin; Martini, Ashlie

    2015-06-12

    Molecular dynamics (MD) simulations were used to model amplitude modulation atomic force microscopy (AM-AFM). In this novel simulation, the model AFM tip responds to both tip-substrate interactions and to a sinusoidal excitation signal. The amplitude and phase shift of the tip oscillation observed in the simulation and their variation with tip-sample distance were found to be consistent with previously reported trends from experiments and theory. These simulation results were also fit to an expression enabling estimation of the energy dissipation, which was found to be smaller than that in a corresponding experiment. The difference was analyzed in terms of the effects of tip size and substrate thickness. Development of this model is the first step toward using MD to gain insight into the atomic-scale phenomena that occur during an AM-AFM measurement.

  5. Small amplitude forced fluid dynamics from gravity at T=0

    NASA Astrophysics Data System (ADS)

    Oh, Jae-Hyuk

    2011-12-01

    The usual derivative expansion of gravity duals of charged fluid dynamics is known to break down in the zero temperature limit. In this case, fluid-gravity duality is not understood precisely. We explore this problem for a zero temperature charged fluid driven by a low frequency, small amplitude and spatially homogeneous external force. In the gravity dual, this corresponds to a time dependent boundary value of the dilaton. We calculate the bulk solution for the dilaton and the leading back reaction to the metric and the gauge fields using the modified low frequency expansion of Faulkner et al. ( arXiv:0907.2694 [hep-th]). The resulting solutions are regular everywhere, establishing fluid-gravity duality to this order.

  6. Laser Actuation of Cantilevers for Picometre Amplitude Dynamic Force Microscopy

    PubMed Central

    Evans, Drew R.; Tayati, Ponlawat; An, Hongjie; Lam, Ping Koy; Craig, Vincent S. J.; Senden, Tim J.

    2014-01-01

    As nanoscale and molecular devices become reality, the ability to probe materials on these scales is increasing in importance. To address this, we have developed a dynamic force microscopy technique where the flexure of the microcantilever is excited using an intensity modulated laser beam to achieve modulation on the picoscale. The flexure arises from thermally induced bending through differential expansion and the conservation of momentum when the photons are reflected and absorbed by the cantilever. In this study, we investigated the photothermal and photon pressure responses of monolithic and layered cantilevers using a modulated laser in air and immersed in water. The developed photon actuation technique is applied to the stretching of single polymer chains. PMID:24993548

  7. Plate reconstructions, Mantle dynamics and True Polar Wander

    NASA Astrophysics Data System (ADS)

    Besse, J.; Greff-Lefftz, M.

    2013-12-01

    In order to understand the mechanisms responsible for TPW (true polar wander, the rotation of the whole lithosphere and mantle with respect to the earth's rotation axis), we investigate the effect of internal masses redistributions on the position of the Earth rotational pole. We use a geodynamic model based on plate reconstructions that estimates the location and rate of subducted slabs and the effect of large-scale upwellings, and compute the associated inertia perturbations. The temporal evolution of the Principal Inertia Axis (PIA) of the Earth derived from this model (the rotational axis is aligned to the maximum PIA) is then investigated, and finally compared to paleomagnetic data. We show: 1) that the inertial effects linked to the complex subduction history during the formation and dislocation of continents may have triggered significant TPW. 2) The cusps of APWPs (Apparent Polar Wandering Paths) at 100-140, 190 and 230Ma may each correspond to inertia perturbations due to older plate reorganizations. 3) TPW and continent repartition (equatorial or polar) may be driven by an episodic character of subductions during the Wilson cycle.

  8. Force regulated dynamics of RPA on a DNA fork

    PubMed Central

    Kemmerich, Felix E.; Daldrop, Peter; Pinto, Cosimo; Levikova, Maryna; Cejka, Petr; Seidel, Ralf

    2016-01-01

    Replication protein A (RPA) is a single-stranded DNA binding protein, involved in most aspects of eukaryotic DNA metabolism. Here, we study the behavior of RPA on a DNA substrate that mimics a replication fork. Using magnetic tweezers we show that both yeast and human RPA can open forked DNA when sufficient external tension is applied. In contrast, at low force, RPA becomes rapidly displaced by the rehybridization of the DNA fork. This process appears to be governed by the binding or the release of an RPA microdomain (toehold) of only few base-pairs length. This gives rise to an extremely rapid exchange dynamics of RPA at the fork. Fork rezipping rates reach up to hundreds of base-pairs per second, being orders of magnitude faster than RPA dissociation from ssDNA alone. Additionally, we show that RPA undergoes diffusive motion on ssDNA, such that it can be pushed over long distances by a rezipping fork. Generally the behavior of both human and yeast RPA homologs is very similar. However, in contrast to yeast RPA, the dissociation of human RPA from ssDNA is greatly reduced at low Mg2+ concentrations, such that human RPA can melt DNA in absence of force. PMID:27016742

  9. Interface dynamics of a two-component Bose-Einstein condensate driven by an external force

    SciTech Connect

    Kobyakov, D.; Bychkov, V.; Lundh, E.; Bezett, A.; Marklund, M.; Akkerman, V.

    2011-04-15

    The dynamics of an interface in a two-component Bose-Einstein condensate driven by a spatially uniform time-dependent force is studied. Starting from the Gross-Pitaevskii Lagrangian, the dispersion relation for linear waves and instabilities at the interface is derived by means of a variational approach. A number of diverse dynamical effects for different types of driving force is demonstrated, which includes the Rayleigh-Taylor instability for a constant force, the Richtmyer-Meshkov instability for a pulse force, dynamic stabilization of the Rayleigh-Taylor instability and onset of the parametric instability for an oscillating force. Gaussian Markovian and non-Markovian stochastic forces are also considered. It is found that the Markovian stochastic force does not produce any average effect on the dynamics of the interface, while the non-Markovian force leads to exponential perturbation growth.

  10. Current Status of Protein Force Fields for Molecular Dynamics

    PubMed Central

    Lopes, Pedro E.M.; Guvench, Olgun

    2015-01-01

    Summary The current status of classical force fields for proteins is reviewed. These include additive force fields as well as the latest developments in the Drude and AMOEBA polarizable force fields. Parametrization strategies developed specifically for the Drude force field are described and compared with the additive CHARMM36 force field. Results from molecular simulations of proteins and small peptides are summarized to illustrate the performance of the Drude and AMOEBA force fields. PMID:25330958

  11. Force and Moment Approach for Achievable Dynamics Using Nonlinear Dynamic Inversion

    NASA Technical Reports Server (NTRS)

    Ostroff, Aaron J.; Bacon, Barton J.

    1999-01-01

    This paper describes a general form of nonlinear dynamic inversion control for use in a generic nonlinear simulation to evaluate candidate augmented aircraft dynamics. The implementation is specifically tailored to the task of quickly assessing an aircraft's control power requirements and defining the achievable dynamic set. The achievable set is evaluated while undergoing complex mission maneuvers, and perfect tracking will be accomplished when the desired dynamics are achievable. Variables are extracted directly from the simulation model each iteration, so robustness is not an issue. Included in this paper is a description of the implementation of the forces and moments from simulation variables, the calculation of control effectiveness coefficients, methods for implementing different types of aerodynamic and thrust vectoring controls, adjustments for control effector failures, and the allocation approach used. A few examples illustrate the perfect tracking results obtained.

  12. Dynamic Data-Driven Event Reconstruction for Atmospheric Releases

    SciTech Connect

    Mirin, A; Serban, R; Kosovic, B

    2005-03-14

    This is a collaborative LDRD Exploratory Research project involving four directorates--Energy & Environment, Engineering, NAI and Computation. The project seeks to answer the following critical questions regarding atmospheric releases--''How much material was released? When? Where? and What are the potential consequences?'' Inaccurate estimation of the source term can lead to gross errors, time delays during a crisis, and even fatalities. We are developing a capability that seamlessly integrates observational data streams with predictive models in order to provide the best possible estimates of unknown source term parameters, as well as optimal and timely situation analyses consistent with both models and data. Our approach utilizes Bayesian inference and stochastic sampling methods (Markov Chain and Sequential Monte Carlo) to reformulate the inverse problem into a solution based on efficient sampling of an ensemble of predictive simulations, guided by statistical comparisons with data. We are developing a flexible and adaptable data-driven event-reconstruction capability for atmospheric releases that provides (1) quantitative probabilistic estimates of the principal source-term parameters (e.g., the time-varying release rate and location); (2) predictions of increasing fidelity as an event progresses and additional data become available; and (3) analysis tools for sensor network design and uncertainty studies. Our computational framework incorporates multiple stochastic algorithms, operates with a range and variety of atmospheric models, and runs on multiple computer platforms, from workstations to large-scale computing resources. Our final goal is a multi-resolution capability for both real-time operational response and high fidelity multi-scale applications.

  13. Automated Reconstruction of Three-Dimensional Fish Motion, Forces, and Torques

    PubMed Central

    Voesenek, Cees J.; Pieters, Remco P. M.; van Leeuwen, Johan L.

    2016-01-01

    Fish can move freely through the water column and make complex three-dimensional motions to explore their environment, escape or feed. Nevertheless, the majority of swimming studies is currently limited to two-dimensional analyses. Accurate experimental quantification of changes in body shape, position and orientation (swimming kinematics) in three dimensions is therefore essential to advance biomechanical research of fish swimming. Here, we present a validated method that automatically tracks a swimming fish in three dimensions from multi-camera high-speed video. We use an optimisation procedure to fit a parameterised, morphology-based fish model to each set of video images. This results in a time sequence of position, orientation and body curvature. We post-process this data to derive additional kinematic parameters (e.g. velocities, accelerations) and propose an inverse-dynamics method to compute the resultant forces and torques during swimming. The presented method for quantifying 3D fish motion paves the way for future analyses of swimming biomechanics. PMID:26752597

  14. A New Forced Oscillation Capability for the Transonic Dynamics Tunnel

    NASA Technical Reports Server (NTRS)

    Piatak, David J.; Cleckner, Craig S.

    2002-01-01

    A new forced oscillation system has been installed and tested at NASA Langley Research Center's Transonic Dynamics Tunnel (TDT). The system is known as the Oscillating Turntable (OTT) and has been designed for the purpose of oscillating, large semispan models in pitch at frequencies up to 40 Hz to acquire high-quality unsteady pressure and loads data. Precisely controlled motions of a wind-tunnel model on the OTT can yield unsteady aerodynamic phenomena associated with flutter, limit cycle oscillations, shock dynamics, and non-linear aerodynamic effects on many vehicle configurations. This paper will discuss general design and components of the OTT and will present test data from performance testing and from research tests on two rigid semispan wind-tunnel models. The research tests were designed to challenge the OTT over a wide range of operating conditions while acquiring unsteady pressure data on a small rectangular supercritical wing and a large supersonic transport wing. These results will be presented to illustrate the performance capabilities, consistency of oscillations, and usefulness of the OTT as a research tool.

  15. Knee Contact Force Asymmetries in Patients Who Failed Return-to-Sport Readiness Criteria 6 Months After Anterior Cruciate Ligament Reconstruction

    PubMed Central

    Gardinier, Emily S.; Di Stasi, Stephanie; Manal, Kurt; Buchanan, Thomas S.; Snyder-Mackler, Lynn

    2015-01-01

    Background After anterior cruciate ligament (ACL) injury, contact forces are decreased in the injured knee when compared with the uninjured knee. The persistence of contact force asymmetries after ACL reconstruction may increase the risk of reinjury and may play an important role in the development of knee osteoarthritis in these patients. Functional performance may also be useful in identifying patients who demonstrate potentially harmful joint contact force asymmetries after ACL reconstruction. Hypothesis Knee joint contact force asymmetries would be present during gait after ACL reconstruction, and performance on a specific set of validated return-to-sport (RTS) readiness criteria would discriminate between those who demonstrated contact force asymmetries and those who did not. Study Design Descriptive laboratory study. Methods A total of 29 patients with ACL ruptures participated in gait analysis and RTS readiness testing 6 months after reconstruction. Muscle and joint contact forces were estimated using an electromyography (EMG)–driven musculoskeletal model of the knee. The magnitude of typical limb asymmetry in uninjured controls was used to define limits of meaningful limb asymmetry in patients after ACL reconstruction. The RTS testing included isometric quadriceps strength testing, 4 unilateral hop tests, and 2 self-report questionnaires. Paired t tests were used to assess limb symmetry for peak medial and tibiofemoral contact forces in all patients, and a mixed-design analysis of variance was used to analyze the effect of passing or failing RTS testing on contact force asymmetry. Results Among all patients, neither statistically significant nor meaningful contact force asymmetries were identified. However, patients who failed RTS testing exhibited meaningful contact force asymmetries, with tibiofemoral contact force being significantly lower for the involved knee. Conversely, patients who passed RTS testing exhibited neither significant nor meaningful

  16. Knee contact force asymmetries in patients who failed return-to-sport readiness criteria 6 months after anterior cruciate ligament reconstruction.

    PubMed

    Gardinier, Emily S; Di Stasi, Stephanie; Manal, Kurt; Buchanan, Thomas S; Snyder-Mackler, Lynn

    2014-12-01

    After anterior cruciate ligament (ACL) injury, contact forces are decreased in the injured knee when compared with the uninjured knee. The persistence of contact force asymmetries after ACL reconstruction may increase the risk of reinjury and may play an important role in the development of knee osteoarthritis in these patients. Functional performance may also be useful in identifying patients who demonstrate potentially harmful joint contact force asymmetries after ACL reconstruction. Knee joint contact force asymmetries would be present during gait after ACL reconstruction, and performance on a specific set of validated return-to-sport (RTS) readiness criteria would discriminate between those who demonstrated contact force asymmetries and those who did not. Descriptive laboratory study. A total of 29 patients with ACL ruptures participated in gait analysis and RTS readiness testing 6 months after reconstruction. Muscle and joint contact forces were estimated using an electromyography (EMG)-driven musculoskeletal model of the knee. The magnitude of typical limb asymmetry in uninjured controls was used to define limits of meaningful limb asymmetry in patients after ACL reconstruction. The RTS testing included isometric quadriceps strength testing, 4 unilateral hop tests, and 2 self-report questionnaires. Paired t tests were used to assess limb symmetry for peak medial and tibiofemoral contact forces in all patients, and a mixed-design analysis of variance was used to analyze the effect of passing or failing RTS testing on contact force asymmetry. Among all patients, neither statistically significant nor meaningful contact force asymmetries were identified. However, patients who failed RTS testing exhibited meaningful contact force asymmetries, with tibiofemoral contact force being significantly lower for the involved knee. Conversely, patients who passed RTS testing exhibited neither significant nor meaningful contact force asymmetries. Joint contact force

  17. eVolv2k: A new ice core-based volcanic forcing reconstruction for the past 2000 years

    NASA Astrophysics Data System (ADS)

    Toohey, Matthew; Sigl, Michael

    2016-04-01

    Radiative forcing resulting from stratospheric aerosols produced by major volcanic eruptions is a dominant driver of climate variability in the Earth's past. The ability of climate model simulations to accurately recreate past climate is tied directly to the accuracy of the volcanic forcing timeseries used in the simulations. We present here a new volcanic forcing reconstruction, based on newly updated ice core composites from Antarctica and Greenland. Ice core records are translated into stratospheric aerosol properties for use in climate models through the Easy Volcanic Aerosol (EVA) module, which provides an analytic representation of volcanic stratospheric aerosol forcing based on available observations and aerosol model results, prescribing the aerosol's radiative properties and primary modes of spatial and temporal variability. The evolv2k volcanic forcing dataset covers the past 2000 years, and has been provided for use in the Paleo-Modeling Intercomparison Project (PMIP), and VolMIP experiments within CMIP6. Here, we describe the construction of the eVolv2k data set, compare with prior forcing sets, and show initial simulation results.

  18. Key Issues When Reconstructing Extensive Upper Eyelid Defects With Description of a Dynamic, Frontalis Turnover Flap.

    PubMed

    Stewart, Christopher M; Tan, Lee Teak; Johnson, David; Norris, Jonathan H

    2016-01-01

    Reconstruction of full thickness, total upper eyelid defects represents a significant challenge in terms of recreating an upper eyelid which has acceptable cosmesis and a degree of dynamic function. Options include bridging, eyelid-sharing techniques (e.g., Cutler-Beard), or nonbridging techniques such as an anterior lamella-based flap combined with a posterior lamella free graft or a "sandwich flap." The success of these techniques depends on the size of the defect, postoperative cosmesis and whether or not the upper eyelid still has a degree of dynamic function to avoid ptosis and exposure keratopathy. The authors present an innervated frontalis turnover flap supporting anterior and posterior lamella grafts as a reconstructive solution for an extensive upper eyelid defect. This technique is cosmetically acceptable, preserves local tissues, and maintains a degree of dynamic function, which keeps the patient's eye comfortable and does not adversely affect visual acuity.

  19. Blending geological observations and convection models to reconstruct mantle dynamics

    NASA Astrophysics Data System (ADS)

    Coltice, Nicolas; Bocher, Marie; Fournier, Alexandre; Tackley, Paul

    2015-04-01

    Knowledge of the state of the Earth mantle and its temporal evolution is fundamental to a variety of disciplines in Earth Sciences, from the internal dynamics to its many expressions in the geological record (postglacial rebound, sea level change, ore deposit, tectonics or geomagnetic reversals). Mantle convection theory is the centerpiece to unravel the present and past state of the mantle. For the past 40 years considerable efforts have been made to improve the quality of numerical models of mantle convection. However, they are still sparsely used to estimate the convective history of the solid Earth, in comparison to ocean or atmospheric models for weather and climate prediction. The main shortcoming is their inability to successfully produce Earth-like seafloor spreading and continental drift self-consistently. Recent convection models have begun to successfully predict these processes. Such breakthrough opens the opportunity to retrieve the recent dynamics of the Earth's mantle by blending convection models together with advanced geological datasets. A proof of concept will be presented, consisting in a synthetic test based on a sequential data assimilation methodology.

  20. Primary maxillary reconstruction after radical maxillectomy using a combined free flap and secondary dynamic suspension.

    PubMed

    Yoza, S; Gunji, H; Ono, I

    1997-01-01

    We report a case of maxillary reconstruction aimed at optimizing facial contour, oral function, and facial animation after radical maxillectomy. In the first stage, using combined latissimus dorsi serratus anterior flaps attached with ribs, we performed a three-dimensional restoration for midface defects. In the second stage, we performed dynamic reconstruction of the nasolabial fold and upper lip using a temporal muscle transposition. As a result, the upper lip was able to be elevated as much as 10 mm when the patient clenched his teeth, and the outcome was judged to be both aesthetically and functionally satisfactory.

  1. Atomic force microscopy imaging and 3-D reconstructions of serial thin sections of a single cell and its interior structures.

    PubMed

    Chen, Yong; Cai, Jiye; Zhao, Tao; Wang, Chenxi; Dong, Shuo; Luo, Shuqian; Chen, Zheng W

    2005-06-01

    The thin sectioning has been widely applied in electron microscopy (EM), and successfully used for an in situ observation of inner ultrastructure of cells. This powerful technique has recently been extended to the research field of atomic force microscopy (AFM). However, there have been no reports describing AFM imaging of serial thin sections and three-dimensional (3-D) reconstruction of cells and their inner structures. In the present study, we used AFM to scan serial thin sections approximately 60 nm thick of a mouse embryonic stem (ES) cell, and to observe the in situ inner ultrastructure including cell membrane, cytoplasm, mitochondria, nucleus membrane, and linear chromatin. The high-magnification AFM imaging of single mitochondria clearly demonstrated the outer membrane, inner boundary membrane and cristal membrane of mitochondria in the cellular compartment. Importantly, AFM imaging on six serial thin sections of a single mouse ES cell showed that mitochondria underwent sequential changes in the number, morphology and distribution. These nanoscale images allowed us to perform 3-D surface reconstruction of interested interior structures in cells. Based on the serial in situ images, 3-D models of morphological characteristics, numbers and distributions of interior structures of the single ES cells were validated and reconstructed. Our results suggest that the combined AFM and serial-thin-section technique is useful for the nanoscale imaging and 3-D reconstruction of single cells and their inner structures. This technique may facilitate studies of proliferating and differentiating stages of stem cells or somatic cells at a nanoscale.

  2. Reconstruction of a scanned topographic image distorted by the creep effect of a Z scanner in atomic force microscopy.

    PubMed

    Han, Cheolsu; Chung, Chung Choo

    2011-05-01

    We analyzed the illusory slopes of scanned images caused by the creep of a Z scanner in an atomic force microscope (AFM) operated in constant-force mode. A method to reconstruct a real topographic image using two scanned images was also developed. In atomic force microscopy, scanned images are distorted by undesirable effects such as creep, hysteresis of the Z scanner, and sample tilt. In contrast to other undesirable effects, the illusory slope that appears in the slow scanning direction of an AFM scan is highly related to the creep effect of the Z scanner. In the controller for a Z scanner, a position-sensitive detector is utilized to maintain a user-defined set-point or force between a tip and a sample surface. This serves to eliminate undesirable effects. The position-sensitive detector that detects the deflection of the cantilever is used to precisely measure the topography of a sample. In the conventional constant-force mode of an atomic force microscope, the amplitude of a control signal is used to construct a scanned image. However, the control signal contains not only the topography data of the sample, but also undesirable effects. Consequently, the scanned image includes the illusory slope due to the creep effect of the Z scanner. In an automatic scanning process, which requires fast scanning and high repeatability, an atomic force microscope must scan the sample surface immediately after a fast approach operation has been completed. As such, the scanned image is badly distorted by a rapid change in the early stages of the creep effect. In this paper, a new method to obtain the tilt angle of a sample and the creep factor of the Z scanner using only two scanned images with no special tools is proposed. The two scanned images can be obtained by scanning the same area of a sample in two different slow scanning directions. We can then reconstruct a real topographic image based on the scanned image, in which both the creep effect of the Z scanner and the slope

  3. Reconstruction of a scanned topographic image distorted by the creep effect of a Z scanner in atomic force microscopy

    NASA Astrophysics Data System (ADS)

    Han, Cheolsu; Chung, Chung Choo

    2011-05-01

    We analyzed the illusory slopes of scanned images caused by the creep of a Z scanner in an atomic force microscope (AFM) operated in constant-force mode. A method to reconstruct a real topographic image using two scanned images was also developed. In atomic force microscopy, scanned images are distorted by undesirable effects such as creep, hysteresis of the Z scanner, and sample tilt. In contrast to other undesirable effects, the illusory slope that appears in the slow scanning direction of an AFM scan is highly related to the creep effect of the Z scanner. In the controller for a Z scanner, a position-sensitive detector is utilized to maintain a user-defined set-point or force between a tip and a sample surface. This serves to eliminate undesirable effects. The position-sensitive detector that detects the deflection of the cantilever is used to precisely measure the topography of a sample. In the conventional constant-force mode of an atomic force microscope, the amplitude of a control signal is used to construct a scanned image. However, the control signal contains not only the topography data of the sample, but also undesirable effects. Consequently, the scanned image includes the illusory slope due to the creep effect of the Z scanner. In an automatic scanning process, which requires fast scanning and high repeatability, an atomic force microscope must scan the sample surface immediately after a fast approach operation has been completed. As such, the scanned image is badly distorted by a rapid change in the early stages of the creep effect. In this paper, a new method to obtain the tilt angle of a sample and the creep factor of the Z scanner using only two scanned images with no special tools is proposed. The two scanned images can be obtained by scanning the same area of a sample in two different slow scanning directions. We can then reconstruct a real topographic image based on the scanned image, in which both the creep effect of the Z scanner and the slope

  4. Dynamic force matching: A method for constructing dynamical coarse-grained models with realistic time dependence

    NASA Astrophysics Data System (ADS)

    Davtyan, Aram; Dama, James F.; Voth, Gregory A.; Andersen, Hans C.

    2015-04-01

    Coarse-grained (CG) models of molecular systems, with fewer mechanical degrees of freedom than an all-atom model, are used extensively in chemical physics. It is generally accepted that a coarse-grained model that accurately describes equilibrium structural properties (as a result of having a well constructed CG potential energy function) does not necessarily exhibit appropriate dynamical behavior when simulated using conservative Hamiltonian dynamics for the CG degrees of freedom on the CG potential energy surface. Attempts to develop accurate CG dynamic models usually focus on replacing Hamiltonian motion by stochastic but Markovian dynamics on that surface, such as Langevin or Brownian dynamics. However, depending on the nature of the system and the extent of the coarse-graining, a Markovian dynamics for the CG degrees of freedom may not be appropriate. In this paper, we consider the problem of constructing dynamic CG models within the context of the Multi-Scale Coarse-graining (MS-CG) method of Voth and coworkers. We propose a method of converting a MS-CG model into a dynamic CG model by adding degrees of freedom to it in the form of a small number of fictitious particles that interact with the CG degrees of freedom in simple ways and that are subject to Langevin forces. The dynamic models are members of a class of nonlinear systems interacting with special heat baths that were studied by Zwanzig [J. Stat. Phys. 9, 215 (1973)]. The properties of the fictitious particles can be inferred from analysis of the dynamics of all-atom simulations of the system of interest. This is analogous to the fact that the MS-CG method generates the CG potential from analysis of equilibrium structures observed in all-atom simulation data. The dynamic models generate a non-Markovian dynamics for the CG degrees of freedom, but they can be easily simulated using standard molecular dynamics programs. We present tests of this method on a series of simple examples that demonstrate that

  5. Dynamic force matching: A method for constructing dynamical coarse-grained models with realistic time dependence

    SciTech Connect

    Davtyan, Aram; Dama, James F.; Voth, Gregory A.; Andersen, Hans C.

    2015-04-21

    Coarse-grained (CG) models of molecular systems, with fewer mechanical degrees of freedom than an all-atom model, are used extensively in chemical physics. It is generally accepted that a coarse-grained model that accurately describes equilibrium structural properties (as a result of having a well constructed CG potential energy function) does not necessarily exhibit appropriate dynamical behavior when simulated using conservative Hamiltonian dynamics for the CG degrees of freedom on the CG potential energy surface. Attempts to develop accurate CG dynamic models usually focus on replacing Hamiltonian motion by stochastic but Markovian dynamics on that surface, such as Langevin or Brownian dynamics. However, depending on the nature of the system and the extent of the coarse-graining, a Markovian dynamics for the CG degrees of freedom may not be appropriate. In this paper, we consider the problem of constructing dynamic CG models within the context of the Multi-Scale Coarse-graining (MS-CG) method of Voth and coworkers. We propose a method of converting a MS-CG model into a dynamic CG model by adding degrees of freedom to it in the form of a small number of fictitious particles that interact with the CG degrees of freedom in simple ways and that are subject to Langevin forces. The dynamic models are members of a class of nonlinear systems interacting with special heat baths that were studied by Zwanzig [J. Stat. Phys. 9, 215 (1973)]. The properties of the fictitious particles can be inferred from analysis of the dynamics of all-atom simulations of the system of interest. This is analogous to the fact that the MS-CG method generates the CG potential from analysis of equilibrium structures observed in all-atom simulation data. The dynamic models generate a non-Markovian dynamics for the CG degrees of freedom, but they can be easily simulated using standard molecular dynamics programs. We present tests of this method on a series of simple examples that demonstrate that

  6. Reconstructing Source-Sink Dynamics in a Population with a Pelagic Dispersal Phase

    PubMed Central

    Chen, Kun; Ciannelli, Lorenzo; Decker, Mary Beth; Ladd, Carol; Cheng, Wei; Zhou, Ziqian; Chan, Kung-Sik

    2014-01-01

    For many organisms, the reconstruction of source-sink dynamics is hampered by limited knowledge of the spatial assemblage of either the source or sink components or lack of information on the strength of the linkage for any source-sink pair. In the case of marine species with a pelagic dispersal phase, these problems may be mitigated through the use of particle drift simulations based on an ocean circulation model. However, when simulated particle trajectories do not intersect sampling sites, the corroboration of model drift simulations with field data is hampered. Here, we apply a new statistical approach for reconstructing source-sink dynamics that overcomes the aforementioned problems. Our research is motivated by the need for understanding observed changes in jellyfish distributions in the eastern Bering Sea since 1990. By contrasting the source-sink dynamics reconstructed with data from the pre-1990 period with that from the post-1990 period, it appears that changes in jellyfish distribution resulted from the combined effects of higher jellyfish productivity and longer dispersal of jellyfish resulting from a shift in the ocean circulation starting in 1991. A sensitivity analysis suggests that the source-sink reconstruction is robust to typical systematic and random errors in the ocean circulation model driving the particle drift simulations. The jellyfish analysis illustrates that new insights can be gained by studying structural changes in source-sink dynamics. The proposed approach is applicable for the spatial source-sink reconstruction of other species and even abiotic processes, such as sediment transport. PMID:24835251

  7. A preliminary investigation of the dynamic force-calibration of a magnetic suspension and balance system

    NASA Technical Reports Server (NTRS)

    Goodyer, M. J.

    1985-01-01

    The aerodynamic forces and moments acting upon a magnetically suspended wind tunnel model are derived from calibrations of suspension electro magnet currents against known forces. As an alternative to the conventional calibration method of applying steady forces to the model, early experiences with dynamic calibration are outlined, that is a calibration obtained by oscillating a model in suspension and deriving a force/current relationship from its inertia force and the unsteady components of currents. Advantages of dynamic calibration are speed and simplicity. The two methods of calibration applied to one force component show good agreement.

  8. Analytic Coulomb approximations for dynamic multipole polarizabilities and dispersion forces

    NASA Astrophysics Data System (ADS)

    Lamm, Gene; Szabo, Attila

    1980-03-01

    This paper presents a comprehensive and unified treatment of atomic multipole oscillator strengths, dynamic multipole polarizabilities, and dispersion force constants in a variety of Coulomb-like approximations. A theoretically and computationally superior modification of the original Bates-Damgaard (BD) procedure, referred to here simply as the Coulomb approximation (CA), is introduced. An analytic expression for the dynamic multipole polarizability is found which contains as special cases this quantity within the CA, the extended Coulomb approximation (ECA) of Adelman and Szabo, and the quantum defect orbital (QDO) method of Simons. This expression contains model-dependent parameters determined from ground and excited state ionization potentials and is derived using a powerful approach based on the sturmian representation of a generalized Coulomb Green's function. In addition, this result is obtained within the ECA and QDO models through an extension of the novel algebraic procedure previously used in obtaining the static polarizability within the ECA, thus demonstrating the equivalence of the two approaches. Static quadrupole and scalar and tensor dipole polarizabilities for a variety of mono and divalent ground and excited state systems within the CA, ECA, and QDO models are compared, when possible, with recent experimental and accurate theoretical work. Except for quadrupole polarizabilities of light divalent systems, agreement for all models is very good. For ground state systems, best accuracy is obtained using the ECA. Illustrative calculation for the dynamic dipole polarizability at real and imaginary frequencies for the He 11S and 21S systems within the ECA is presented and compared with the definitive results of Glover and Weinhold (GW). For He 11S, despite an 8% error in the predicted static polarizability, scaling the dynamic polarizability to the GW static value shows the frequency dependence to be accurately represented. The analytic nature of the

  9. Simultaneous 99mtc/111in spect reconstruction using accelerated convolution-based forced detection monte carlo

    NASA Astrophysics Data System (ADS)

    Karamat, Muhammad I.; Farncombe, Troy H.

    2015-10-01

    Simultaneous multi-isotope Single Photon Emission Computed Tomography (SPECT) imaging has a number of applications in cardiac, brain, and cancer imaging. The major concern however, is the significant crosstalk contamination due to photon scatter between the different isotopes. The current study focuses on a method of crosstalk compensation between two isotopes in simultaneous dual isotope SPECT acquisition applied to cancer imaging using 99mTc and 111In. We have developed an iterative image reconstruction technique that simulates the photon down-scatter from one isotope into the acquisition window of a second isotope. Our approach uses an accelerated Monte Carlo (MC) technique for the forward projection step in an iterative reconstruction algorithm. The MC estimated scatter contamination of a radionuclide contained in a given projection view is then used to compensate for the photon contamination in the acquisition window of other nuclide. We use a modified ordered subset-expectation maximization (OS-EM) algorithm named simultaneous ordered subset-expectation maximization (Sim-OSEM), to perform this step. We have undertaken a number of simulation tests and phantom studies to verify this approach. The proposed reconstruction technique was also evaluated by reconstruction of experimentally acquired phantom data. Reconstruction using Sim-OSEM showed very promising results in terms of contrast recovery and uniformity of object background compared to alternative reconstruction methods implementing alternative scatter correction schemes (i.e., triple energy window or separately acquired projection data). In this study the evaluation is based on the quality of reconstructed images and activity estimated using Sim-OSEM. In order to quantitate the possible improvement in spatial resolution and signal to noise ratio (SNR) observed in this study, further simulation and experimental studies are required.

  10. Dynamic-Feature Extraction, Attribution and Reconstruction (DEAR) Method for Power System Model Reduction

    SciTech Connect

    Wang, Shaobu; Lu, Shuai; Zhou, Ning; Lin, Guang; Elizondo, Marcelo A.; Pai, M. A.

    2014-09-04

    In interconnected power systems, dynamic model reduction can be applied on generators outside the area of interest to mitigate the computational cost with transient stability studies. This paper presents an approach of deriving the reduced dynamic model of the external area based on dynamic response measurements, which comprises of three steps, dynamic-feature extraction, attribution and reconstruction (DEAR). In the DEAR approach, a feature extraction technique, such as singular value decomposition (SVD), is applied to the measured generator dynamics after a disturbance. Characteristic generators are then identified in the feature attribution step for matching the extracted dynamic features with the highest similarity, forming a suboptimal ‘basis’ of system dynamics. In the reconstruction step, generator state variables such as rotor angles and voltage magnitudes are approximated with a linear combination of the characteristic generators, resulting in a quasi-nonlinear reduced model of the original external system. Network model is un-changed in the DEAR method. Tests on several IEEE standard systems show that the proposed method gets better reduction ratio and response errors than the traditional coherency aggregation methods.

  11. The dynamic forces and moments required in handling tree-length logs.

    Treesearch

    John A. Sturos

    1971-01-01

    Realistic dynamic loading requirements for tree- or log-harvesting machines were determined. The study showed that dynamic forces and moments four times as great as those required statically can occur in the field.

  12. Forcing of stratospheric chemistry and dynamics during the Dalton Minimum

    NASA Astrophysics Data System (ADS)

    Anet, J. G.; Muthers, S.; Rozanov, E.; Raible, C. C.; Peter, T.; Stenke, A.; Shapiro, A. I.; Beer, J.; Steinhilber, F.; Brönnimann, S.; Arfeuille, F.; Brugnara, Y.; Schmutz, W.

    2013-11-01

    when all forcing factors are applied during the Dalton Minimum (DM) - this effect is especially well visible for NOx/NOy. Thus, this study also shows the non-linear behaviour of the coupled chemistry-climate system. Finally, we conclude that especially UV and volcanic eruptions dominate the changes in the ozone, temperature and dynamics while the NOx field is dominated by the energetic particle precipitation. Visible radiation changes have only very minor effects on both stratospheric dynamics and chemistry.

  13. Fast direct reconstruction strategy of dynamic fluorescence molecular tomography using graphics processing units

    NASA Astrophysics Data System (ADS)

    Chen, Maomao; Zhang, Jiulou; Cai, Chuangjian; Gao, Yang; Luo, Jianwen

    2016-06-01

    Dynamic fluorescence molecular tomography (DFMT) is a valuable method to evaluate the metabolic process of contrast agents in different organs in vivo, and direct reconstruction methods can improve the temporal resolution of DFMT. However, challenges still remain due to the large time consumption of the direct reconstruction methods. An acceleration strategy using graphics processing units (GPU) is presented. The procedure of conjugate gradient optimization in the direct reconstruction method is programmed using the compute unified device architecture and then accelerated on GPU. Numerical simulations and in vivo experiments are performed to validate the feasibility of the strategy. The results demonstrate that, compared with the traditional method, the proposed strategy can reduce the time consumption by ˜90% without a degradation of quality.

  14. An optimization transfer algorithm for nonlinear parametric image reconstruction from dynamic PET data.

    PubMed

    Wang, Guobao; Qi, Jinyi

    2012-10-01

    Direct reconstruction of kinetic parameters from raw projection data is a challenging task in molecular imaging using dynamic positron emission tomography (PET). This paper presents a new optimization transfer algorithm for penalized likelihood direct reconstruction of nonlinear parametric images that is easy to use and has a fast convergence rate. Each iteration of the proposed algorithm can be implemented in three simple steps: a frame-by-frame maximum likelihood expectation-maximization (EM)-like image update, a frame-by-frame image smoothing, and a pixel-by-pixel time activity curve fitting. Computer simulation shows that the direct algorithm can achieve a better bias-variance performance than the indirect reconstruction algorithm. The convergence rate of the new algorithm is substantially faster than our previous algorithm that is based on a separable paraboloidal surrogate function. The proposed algorithm has been applied to real 4-D PET data.

  15. Lacustrine 87Sr/86Sr as a tracer to reconstruct Milankovitch forcing of the Eocene hydrologic cycle

    NASA Astrophysics Data System (ADS)

    Baddouh, M'bark; Meyers, Stephen R.; Carroll, Alan R.; Beard, Brian L.; Johnson, Clark M.

    2016-08-01

    The Green River Formation (GRF) provides one of the premier paleoclimate archives of the Early Eocene Climatic Optimum (∼50 Ma), representing the apex of the early Cenozoic greenhouse climate. Rhythmic lake-level variability expressed in the GRF has inspired numerous hypotheses for the behavior of the Eocene hydrologic cycle, including its linkage to astronomical forcing, solar variability, and the El Niño Southern Oscillation (ENSO). However, the lack of sufficient proxy data to document atmospheric water-mass transport and the geographic pattern of evaporation/precipitation/runoff has made it difficult to discriminate between different models for astronomical forcing. Variable 87Sr/86Sr ratios of bedrock that encompass the GRF provide an opportunity to reconstruct the spatial expression of the Eocene hydrologic cycle and its linkage to lake level. Here Sr isotope data from the Wilkins Peak Member, a rhythmic succession that has been demonstrated to record Milankovitch forcing of lake levels, indicate that high lake levels reflect an increased proportion of runoff from less radiogenic rocks west of the basin, eliminating a number of the existing astronomical-forcing hypotheses. The 87Sr/86Sr variability is consistent with a change in mean ENSO state, which is predicted by climate models to be linked to orbital-insolation. Thus, the 87Sr/86Sr data reveal a coupling of high frequency (ENSO) and low frequency (astronomical) climate variability, and also predict the existence of sizable astronomically-forced alpine snowpack during the last greenhouse climate. More broadly, this study demonstrates the utility of 87Sr/86Sr as a powerful tool for reconstructing the deep-time hydrologic cycle.

  16. Static and dynamic tibial translation before, 5 weeks after, and 5 years after anterior cruciate ligament reconstruction.

    PubMed

    Tagesson, Sofi; Öberg, Birgitta; Kvist, Joanna

    2015-12-01

    To evaluate static and dynamic tibial translation before, 5 weeks after, and 5 years after anterior cruciate ligament (ACL) reconstruction. To explore whether static and dynamic tibial translation are correlated. Ten patients undergoing quadruple hamstring tendon graft ACL reconstruction were evaluated before, 5 weeks after, and 5 years after ACL reconstruction. Sagittal tibial translation was measured during the Lachman test (static translation) and during gait (dynamic translation) using a CA-4000 electrogoniometer. Five years after ACL reconstruction, static tibial translation did not differ between knees (Lachman test 90 N and 134 N n.s.). In contrast, there was greater maximal anterior tibial translation during gait in ACL-reconstructed knees than in uninjured knees (5.5 ± 1.4 vs. 4.5 ± 1.6 mm, P = 0.028). There were no differences in static or dynamic tibial translation between the 5-year follow-up and before ACL reconstruction or between the 5-year follow-up and the 5-week follow-up. There were no correlations between static and dynamic tibial translation. Although static tibial translation did not differ between knees 5 years after ACL reconstruction, dynamic tibial translation during gait was greater in ACL-reconstructed knees than in uninjured knees. Neither static nor dynamic tibial translation changed 5 years after ACL reconstruction as compared to before surgery and 5 weeks after surgery. Static tibial translation did not correlate with dynamic tibial translation. This study indicates that although the knee is stable during static measurements, kinematics during gait is impaired 5 years after ACL reconstruction. This may affect the return to sport and risk of osteoarthritis. Case series, Level IV.

  17. Dynamic Simulation of the Effects of Graft Fixation Errors During Medial Patellofemoral Ligament Reconstruction

    PubMed Central

    Elias, John J.; Kelly, Michael J.; Smith, Kathryn E.; Gall, Kenneth A.; Farr, Jack

    2016-01-01

    Background: Medial patellofemoral ligament (MPFL) reconstruction is performed to prevent recurrent instability, but errors in femoral fixation can elevate graft tension. Hypothesis: Errors related to femoral fixation will overconstrain the patella and increase medial patellofemoral pressures. Study Design: Controlled laboratory study. Methods: Five knees with patellar instability were represented with computational models. Kinematics during knee extension were characterized from computational reconstruction of motion performed within a dynamic computed tomography (CT) scanner. Multibody dynamic simulation of knee extension, with discrete element analysis used to quantify contact pressures, was performed for the preoperative condition and after MPFL reconstruction. A standard femoral attachment and graft resting length were set for each knee. The resting length was decreased by 2 mm, and the femoral attachment was shifted 5 mm posteriorly. The simulated errors were also combined. Root-mean-square errors were quantified for the comparison of preoperative patellar lateral shift and tilt between computationally reconstructed motion and dynamic simulation. Simulation output was compared between the preoperative and MPFL reconstruction conditions with repeated-measures Friedman tests and Dunnett comparisons against a control, which was the standard MPFL condition, with statistical significance set at P < .05. Results: Root-mean-square errors for simulated patellar tilt and shift were 5.8° and 3.3 mm, respectively. Patellar lateral tracking for the preoperative condition was significantly larger near full extension compared with the standard MPFL reconstruction (mean differences of 8 mm and 13° for shift and tilt, respectively, at 0°), and lateral tracking was significantly smaller for a posterior femoral attachment (mean differences of 3 mm and 4° for shift and tilt, respectively, at 0°). The maximum medial pressure was also larger for the short graft with a

  18. Using ToxCast data to reconstruct dynamic cell state ...

    EPA Pesticide Factsheets

    AbstractBackground. High-throughput in vitro screening is an important tool for evaluating the potential biological activity of the thousands of existing chemicals in commerce and the hundreds more introduced each year. Among the assay technologies available, high-content imaging (HCI) allows multiplexed measurements of cellular phenotypic changes induced by chemical exposures. For a large chemical inventory having limited concentration-time series data, the deconvolution of cellular response profiles into transitive or irrevocable state trajectories is an important consideration. Objectives. Our goal was to analyze temporal and concentration-related cellular changes measured using HCI to identify the “tipping point” at which the cells did not show recovery towards a normal phenotypic state. Methods. The effects of 976 chemicals (ToxCast Phase I and II) were evaluated using HCI as a function of concentration and time in HepG2 cells over a 72-hr exposure period to concentrations ranging from 0.4- to 200 µM. The cellular endpoints included nuclear p53 accumulation, JNK, markers of oxidative stress, cytoskeletal changes, mitochondrial energization and density, cell viability and cell cycle progression. A novel computational model was developed to interpret dynamic multidimensional system responses as cell-state trajectories. Results. Analysis of cell-state trajectories showed that HepG2 cells were resilient to the effects of 178 chemicals up to the highest co

  19. Reconstructing the intermittent dynamics of the torque in wind turbines

    NASA Astrophysics Data System (ADS)

    Lind, Pedro G.; Wächter, Matthias; Peinke, Joachim

    2014-06-01

    We apply a framework introduced in the late nineties to analyze load measurements in off-shore wind energy converters (WEC). The framework is borrowed from statistical physics and properly adapted to the analysis of multivariate data comprising wind velocity, power production and torque measurements, taken at one single WEC. In particular, we assume that wind statistics drives the fluctuations of the torque produced in the wind turbine and show how to extract an evolution equation of the Langevin type for the torque driven by the wind velocity. It is known that the intermittent nature of the atmosphere, i.e. of the wind field, is transferred to the power production of a wind energy converter and consequently to the shaft torque. We show that the derived stochastic differential equation quantifies the dynamical coupling of the measured fluctuating properties as well as it reproduces the intermittency observed in the data. Finally, we discuss our approach in the light of turbine monitoring, a particular important issue in off-shore wind farms.

  20. Dynamic (de)focused projection for three-dimensional reconstruction

    NASA Astrophysics Data System (ADS)

    Lertrusdachakul, Intuon; Fougerolle, Yohan D.; Laligant, Olivier

    2011-11-01

    We present a novel 3-D recovery method based on structured light. This method unifies depth from focus (DFF) and depth from defocus (DFD) techniques with the use of a dynamic (de)focused projection. With this approach, the image acquisition system is specifically constructed to keep a whole object sharp in all the captured images. Therefore, only the projected patterns experience different defocused deformations according to the object's depths. When the projected patterns are out of focus, their point-spread function (PSF) is assumed to follow a Gaussian distribution. The final depth is computed by the analysis of the relationship between the sets of PSFs obtained from different blurs and the variation of the object's depths. Our new depth estimation can be employed as a stand-alone strategy. It has no problem with occlusion and correspondence issues. Moreover, it handles textureless and partially reflective surfaces. The experimental results on real objects demonstrate the effective performance of our approach, providing reliable depth estimation and competitive time consumption. It uses fewer input images than DFF, and unlike DFD, it ensures that the PSF is locally unique.

  1. Reconstructing 3-D maps of the local viscoelastic properties using a finite-amplitude modulated radiation force.

    PubMed

    Giannoula, Alexia; Cobbold, Richard; Bezerianos, Anastasios

    2014-02-01

    A modulated acoustic radiation force, produced by two confocal tone-burst ultrasound beams of slightly different frequencies (i.e. 2.0 MHz ± Δf/2, where Δf is the difference frequency), can be used to remotely generate modulated low-frequency (Δf ≤ 500 Hz) shear waves in attenuating media. By appropriately selecting the duration of the two beams, the energy of the generated shear waves can be concentrated around the difference frequency (i.e., Δf ± Δf/2). In this manner, neither their amplitude nor their phase information is distorted by frequency-dependent effects, thereby, enabling a more accurate reconstruction of the viscoelastic properties. Assuming a Voigt viscoelastic model, this paper describes the use of a finite-element-method model to simulate three-dimensional (3-D) shear-wave propagation in viscoelastic media containing a spherical inclusion. Nonlinear propagation is assumed for the two ultrasound beams, so that higher harmonics are developed in the force and shear spectrum. Finally, an inverse reconstruction algorithm is used to extract 3-D maps of the local shear modulus and viscosity from the simulated shear-displacement fields based on the fundamental and second-harmonic component. The quality of the reconstructed maps is evaluated using the contrast between the inclusion and the background and the contrast-to-noise ratio (CNR). It is shown that the shear modulus can be accurately reconstructed based on the fundamental component, such that the observed contrast deviates from the true contrast by a root-mean-square-error (RMSE) of only 0.38 and the CNR is greater than 30 dB. If the second-harmonic component is used, the RMSE becomes 1.54 and the corresponding CNR decreases by approximately 10-15 dB. The reconstructed shear viscosity maps based on the second harmonic are shown to be of higher quality than those based on the fundamental. The effects of noise are also investigated and a fusion operation between the two spectral components is

  2. A new approach to the long-term reconstruction of the solar irradiance leads to large historical solar forcing

    NASA Astrophysics Data System (ADS)

    Shapiro, A. I.; Schmutz, W.; Rozanov, E.; Schoell, M.; Haberreiter, M.; Shapiro, A. V.; Nyeki, S.

    2011-05-01

    Context. The variable Sun is the most likely candidate for the natural forcing of past climate changes on time scales of 50 to 1000 years. Evidence for this understanding is that the terrestrial climate correlates positively with the solar activity. During the past 10 000 years, the Sun has experienced the substantial variations in activity and there have been numerous attempts to reconstruct solar irradiance. While there is general agreement on how solar forcing varied during the last several hundred years - all reconstructions are proportional to the solar activity - there is scientific controversy on the magnitude of solar forcing. Aims: We present a reconstruction of the total and spectral solar irradiance covering 130 nm-10 μm from 1610 to the present with an annual resolution and for the Holocene with a 22-year resolution. Methods: We assume that the minimum state of the quiet Sun in time corresponds to the observed quietest area on the present Sun. Then we use available long-term proxies of the solar activity, which are 10Be isotope concentrations in ice cores and 22-year smoothed neutron monitor data, to interpolate between the present quiet Sun and the minimum state of the quiet Sun. This determines the long-term trend in the solar variability, which is then superposed with the 11-year activity cycle calculated from the sunspot number. The time-dependent solar spectral irradiance from about 7000 BC to the present is then derived using a state-of-the-art radiation code. Results: We derive a total and spectral solar irradiance that was substantially lower during the Maunder minimum than the one observed today. The difference is remarkably larger than other estimations published in the recent literature. The magnitude of the solar UV variability, which indirectly affects the climate, is also found to exceed previous estimates.We discuss in detail the assumptions that lead us to this conclusion. Appendix is only available in electronic form at http://www.aanda.org

  3. Drivers of drift sand dynamics; a reconstruction for the Wekeromse Zand, the Netherlands

    NASA Astrophysics Data System (ADS)

    Hendriks, Chantal; Sonneveld, Marthijn; Wallinga, Jakob

    2013-04-01

    Inland active drift sand landscapes are regarded as unique ecosystems of great historical and geomorphological value. Recent studies have highlighted the role of multiple factors in the initiation and stabilization of drift sand landscapes. To unravel the importance of different forcings (e.g. agricultural practices, climate) and their interplay, insight in the chronology of drift sand dynamics is essential. In this study, we aimed to reconstruct the dynamics of the drift sand landscape of the Wekeromse Zand (central Netherlands) and to develop a conceptual model to understand the processes involved. The Wekeromse Zand study area (370 ha) is located on the border of a central push moraine and is characterised by open active drift sands (14 ha) and vegetated hills and valleys. The surroundings are dominated by modern agricultural practices, and remnants from ancient iron age Celtic Field systems showing that the area has been in agricultural use since at least the Iron Age. For the study area we: i) analysed historical maps going back to the early 19th century, ii) performed a field survey to map the palaeolandscape (before drift sand activation) and iii) employed optically stimulated luminescence (OSL) dating of drift sand deposits on 11 samples from two locations to determine the timing of drift sand deposition. Analysis of the available topographic maps showed no substantial aeolean activity of the area outside its morphological boundaries. OSL dating revealed that two drift sand layers were deposited between 1373 and 1462 AD and between 1680 and 1780 AD. A layer with a higher organic matter content was found at one of the sites. This suggests that the Wekeromse Zand has known three relatively stable periods: i) a period between the start of the Holocene to the Late Medieval Period, ii) in between the Medieval climatic optimum and the climatic Maunder minimum, and iii) current situation. Despite the fact that agricultural activities occurred in this area from the

  4. Lower Limb Kinematics and Dynamic Postural Stability in Anterior Cruciate Ligament-Reconstructed Female Athletes

    PubMed Central

    Delahunt, Eamonn; Chawke, Mark; Kelleher, Judy; Murphy, Katie; Prendiville, Anna; Sweeny, Lauren; Patterson, Matt

    2013-01-01

    Context: Deficits in lower limb kinematics and postural stability are predisposing factors to the development of knee ligamentous injury. The extent to which these deficits are present after anterior cruciate ligament (ACL) reconstruction is still largely unknown. The primary hypothesis of the present study was that female athletes who have undergone ACL reconstruction and who have returned to sport participation would exhibit deficits in dynamic postural stability as well as deficiencies in hip- and knee-joint kinematics when compared with an age-, activity-, and sex-matched uninjured control group. Objective: To investigate dynamic postural stability as quantified by the Star Excursion Balance Test (SEBT) and simultaneous hip- and knee-joint kinematic profiles in female athletes who have undergone ACL reconstruction. Design: Descriptive laboratory study. Setting: University motion-analysis laboratory. Patients or Other Participants: Fourteen female athletes who had previously undergone ACL reconstruction (ACL-R) and 17 age- and sex-matched uninjured controls. Intervention(s): Each participant performed 3 trials of the anterior, posterior-medial, and posterior-lateral directional components of the SEBT. Main Outcome Measure(s): Reach distances for each directional component were quantified and expressed as a percentage of leg length. Simultaneous hip- and knee-joint kinematic profiles were recorded using a motion-analysis system. Results: The ACL-R group had decreased reach distances on the posterior-medial (P < .01) and posterior-lateral (P < .01) directional components of the SEBT. During performance of the directional components of the SEBT, ACL-R participants demonstrated altered hip-joint frontal-, sagittal-, and transverse-plane kinematic profiles (P < .05), as well as altered knee-joint sagittal-plane kinematic profiles (P < .05). Conclusions: Deficits in dynamic postural stability and concomitant altered hip- and knee-joint kinematics are present after ACL

  5. Non-stationary reconstruction for dynamic fluorescence molecular tomography with extended kalman filter

    PubMed Central

    Liu, Xin; Wang, Hongkai; Yan, Zhuangzhi

    2016-01-01

    Dynamic fluorescence molecular tomography (FMT) plays an important role in drug delivery research. However, the majority of current reconstruction methods focus on solving the stationary FMT problems. If the stationary reconstruction methods are applied to the time-varying fluorescence measurements, the reconstructed results may suffer from a high level of artifacts. In addition, based on the stationary methods, only one tomographic image can be obtained after scanning one circle projection data. As a result, the movement of fluorophore in imaged object may not be detected due to the relative long data acquisition time (typically >1 min). In this paper, we apply extended kalman filter (EKF) technique to solve the non-stationary fluorescence tomography problem. Especially, to improve the EKF reconstruction performance, the generalized inverse of kalman gain is calculated by a second-order iterative method. The numerical simulation, phantom, and in vivo experiments are performed to evaluate the performance of the method. The experimental results indicate that by using the proposed EKF-based second-order iterative (EKF-SOI) method, we cannot only clearly resolve the time-varying distributions of fluorophore within imaged object, but also greatly improve the reconstruction time resolution (~2.5 sec/frame) which makes it possible to detect the movement of fluorophore during the imaging processes. PMID:27895993

  6. Non-stationary reconstruction for dynamic fluorescence molecular tomography with extended kalman filter.

    PubMed

    Liu, Xin; Wang, Hongkai; Yan, Zhuangzhi

    2016-11-01

    Dynamic fluorescence molecular tomography (FMT) plays an important role in drug delivery research. However, the majority of current reconstruction methods focus on solving the stationary FMT problems. If the stationary reconstruction methods are applied to the time-varying fluorescence measurements, the reconstructed results may suffer from a high level of artifacts. In addition, based on the stationary methods, only one tomographic image can be obtained after scanning one circle projection data. As a result, the movement of fluorophore in imaged object may not be detected due to the relative long data acquisition time (typically >1 min). In this paper, we apply extended kalman filter (EKF) technique to solve the non-stationary fluorescence tomography problem. Especially, to improve the EKF reconstruction performance, the generalized inverse of kalman gain is calculated by a second-order iterative method. The numerical simulation, phantom, and in vivo experiments are performed to evaluate the performance of the method. The experimental results indicate that by using the proposed EKF-based second-order iterative (EKF-SOI) method, we cannot only clearly resolve the time-varying distributions of fluorophore within imaged object, but also greatly improve the reconstruction time resolution (~2.5 sec/frame) which makes it possible to detect the movement of fluorophore during the imaging processes.

  7. Model-based iterative reconstruction using higher-order regularization of dynamic synchrotron data

    NASA Astrophysics Data System (ADS)

    Kazantsev, Daniil; Guo, Enyu; Phillion, A. B.; Withers, Philip J.; Lee, Peter D.

    2017-09-01

    We present a novel iterative reconstruction method applied to in situ x-ray synchrotron tomographic data of dendrite formation during the solidification of magnesium alloy. Frequently, fast dynamic imaging projection data are undersampled, noisy, of poor contrast and can contain various acquisition artifacts. Direct reconstruction methods are not suitable and iterative reconstruction techniques must be adapted to the existing data features. Normally, an accurate modelling of the objective function can guarantee a better reconstruction. In this work, we design a special cost function where the data fidelity term is based on the Group-Huber functional to minimize ring artifacts and the regularization term is a higher-order variational penalty. We show that the total variation penalty is unsuitable for some cases and higher-order regularization functionals can ensure a better fit to the expected properties of the data. Additionally, we highlight the importance of 3D regularization over 2D for the problematic data. The proposed method shows a promising performance dealing with angular undersampled noisy dynamic data with ring artifacts.

  8. Direct Parametric Reconstruction With Joint Motion Estimation/Correction for Dynamic Brain PET Data.

    PubMed

    Jiao, Jieqing; Bousse, Alexandre; Thielemans, Kris; Burgos, Ninon; Weston, Philip S J; Schott, Jonathan M; Atkinson, David; Arridge, Simon R; Hutton, Brian F; Markiewicz, Pawel; Ourselin, Sebastien

    2017-01-01

    Direct reconstruction of parametric images from raw photon counts has been shown to improve the quantitative analysis of dynamic positron emission tomography (PET) data. However it suffers from subject motion which is inevitable during the typical acquisition time of 1-2 hours. In this work we propose a framework to jointly estimate subject head motion and reconstruct the motion-corrected parametric images directly from raw PET data, so that the effects of distorted tissue-to-voxel mapping due to subject motion can be reduced in reconstructing the parametric images with motion-compensated attenuation correction and spatially aligned temporal PET data. The proposed approach is formulated within the maximum likelihood framework, and efficient solutions are derived for estimating subject motion and kinetic parameters from raw PET photon count data. Results from evaluations on simulated [(11)C]raclopride data using the Zubal brain phantom and real clinical [(18)F]florbetapir data of a patient with Alzheimer's disease show that the proposed joint direct parametric reconstruction motion correction approach can improve the accuracy of quantifying dynamic PET data with large subject motion.

  9. Solar forcing and atmospheric control of paleoflood dynamics in the Bernese Alps, Switzerland

    NASA Astrophysics Data System (ADS)

    Schulte, Lothar; Peña, Juan Carlos; Burjachs, Francesc; Carvalho, Filipe; Llorca, Jaime; Julià, Ramon; Lomax, Johanna; Schmidt, Thomas; Rubio, Patricio; Losada, Justino; Veit, Heinz

    2014-05-01

    A multidisciplinary approach provides data from natural, historical, and instrumental time series, for the study of potential effects of climatic changes on alpine floods outside the known range of extreme events. The research focuses on the densely populated Bernese Alps, which are a true "hot spot" of hydrological risk. For the reconstruction of climate variability and floods, interdecadal-resolution alluvial delta plain records were examined. The multi-proxy approach affords insight into alpine flood dynamics of mid-scale catchments during the last three millennia. Spectral analysis of the geochemical and pollen time series records and climate proxies (δ14C, δ18O isotopes from the Greenland ice, NAO) evidence similar periodicities of 60, 85, 105 and 200 yrs. Thus, the mechanisms of the flood processes are strongly influenced by the North Atlantic dynamics and solar activity. The proxies indicate that cooler climate pulses and transitions from cool to warm climate pulses were an important external driving force of floods. This hypothesis is supported by the reconstructed floods of the Aare and Lütschine rivers from local documentary sources during the last 500 yrs. Flood periods inferred from sedimentary archives (flood layers, geochemical proxies and shifts of river channel) were calibrated by local documentary flood records and compared with the pattern of settlement on flood prone landforms. The generated data series shows also a good correlation with climate proxies, such as the annual temperatures of Europe (Luterbacher et al., 2004), tree ring based summer temperatures of Central Europe (Büntgen et al., 2011) and total solar irradiance according to the model of Steinhilber et al. (2009). With regard to the last two centuries flood magnitude and frequencies (exact dating) as well as driving mechanisms were reconstructed with more precision. Furthermore, a summer flood index of Switzerland (INU) based on damages recorded from 1800 to 2008 AD was performed

  10. Traction force dynamics predict gap formation in activated endothelium.

    PubMed

    Valent, Erik T; van Nieuw Amerongen, Geerten P; van Hinsbergh, Victor W M; Hordijk, Peter L

    2016-09-10

    In many pathological conditions the endothelium becomes activated and dysfunctional, resulting in hyperpermeability and plasma leakage. No specific therapies are available yet to control endothelial barrier function, which is regulated by inter-endothelial junctions and the generation of acto-myosin-based contractile forces in the context of cell-cell and cell-matrix interactions. However, the spatiotemporal distribution and stimulus-induced reorganization of these integral forces remain largely unknown. Traction force microscopy of human endothelial monolayers was used to visualize contractile forces in resting cells and during thrombin-induced hyperpermeability. Simultaneously, information about endothelial monolayer integrity, adherens junctions and cytoskeletal proteins (F-actin) were captured. This revealed a heterogeneous distribution of traction forces, with nuclear areas showing lower and cell-cell junctions higher traction forces than the whole-monolayer average. Moreover, junctional forces were asymmetrically distributed among neighboring cells. Force vector orientation analysis showed a good correlation with the alignment of F-actin and revealed contractile forces in newly formed filopodia and lamellipodia-like protrusions within the monolayer. Finally, unstable areas, showing high force fluctuations within the monolayer were prone to form inter-endothelial gaps upon stimulation with thrombin. To conclude, contractile traction forces are heterogeneously distributed within endothelial monolayers and force instability, rather than force magnitude, predicts the stimulus-induced formation of intercellular gaps. Copyright © 2016 Elsevier Inc. All rights reserved.

  11. Dynamics of offshore structures under sea waves and earthquake forces

    SciTech Connect

    Jain, A.K.

    1996-12-31

    The analysis and design of Offshore Structures is a complicated process and requires several assumptions and approximations. The structures have to resist a hostile environment and the loads acting on them in a typical ocean environment are many such as wind, waves, tides, currents, ice, earthquakes, temperature loads, operational loads and so on. It is necessary to design an offshore structure such that it can respond to moderate severe environmental loads without damage and be capable of resisting severe environmental loads without seriously endangering the occupants. In this paper, a study of the dynamic analysis of offshore structures in random seas to inputs of earthquake ground motions is presented. P-M spectrum is used for sea wave representation and the Morison equation defines the wave forcing function. Kanai-Tajimi`s PSDF is used for the ground acceleration due to earthquakes. Response analysis is carried out using the time domain random vibration approach. It has been observed that the hydrodynamic damping is higher in random seas than in still water and sea waves induce a reducing effect on the seismic response.

  12. Successional dynamics in the seasonally forced diamond food web.

    PubMed

    Klausmeier, Christopher A; Litchman, Elena

    2012-07-01

    Plankton seasonal succession is a classic example of nonequilibrium community dynamics. Despite the fact that it has been well studied empirically, it lacks a general quantitative theory. Here we investigate a food web model that includes a resource, two phytoplankton, and a shared grazer-the diamond food web-in a seasonal environment. The model produces a number of successional trajectories that have been widely discussed in the context of the verbal Plankton Ecology Group model of succession, such as a spring bloom of a good competitor followed by a grazer-induced clear-water phase, setting the stage for the late-season dominance of a grazer-resistant species. It also predicts a novel, counterintuitive trajectory where the grazer-resistant species has both early- and late-season blooms. The model often generates regular annual cycles but sometimes produces multiyear cycles or chaos, even with identical forcing each year. Parameterizing the model, we show how the successional trajectory depends on nutrient supply and the length of the growing season, two key parameters that vary among water bodies. This model extends nonequilibrium theory to food webs and is a first step toward a quantitative theory of plankton seasonal succession.

  13. Half-precessional climate forcing of Indian Ocean monsoon dynamics on the East African equator

    NASA Astrophysics Data System (ADS)

    Verschuren, D.; Sinninghe Damste, J. S.; Moernaut, J.; Kristen, I.; Fagot, M.; Blaauw, M.; Haug, G. H.; Project Members, C.

    2008-12-01

    The EuroCLIMATE project CHALLACEA produced a detailed multi-proxy reconstruction of the climate history of equatorial East Africa, based on the sediment record of Lake Challa, a 4.2 km2, 92-m deep crater lake on the lower East slope of Mt. Kilimanjaro (Kenya/Tanzania). Relatively stable sedimentation dynamics over the past 25,000 years resulted in a unique combination of high temporal resolution, excellent radiometric (210Pb, 14C) age control, and confidence that recording parameters of the climatic proxy signals extracted from the sediment have remained constant through time. The equatorial (3 deg. S) location of our study site in East Africa, where seasonal migration of convective activity spans the widest latitude range worldwide, produced unique information on how varying rainfall contributions from the northeasterly and southeasterly Indian Ocean monsoons shaped regional climate history. The Challa proxy records for temperature (TEX86) and moisture balance (reflection-seismic stratigraphy and the BIT index of soil bacterial input) uniquely weave together tropical climate variability at orbital and shorter time scales. The temporal pattern of reconstructed moisture balance bears the clear signature of half- precessional insolation forcing of Indian Ocean monsoon dynamics, modified by northern-latitude influence on moisture-balance variation at millennial and century time scales. During peak glacial time (but not immediately before) and the Younger Dryas, NH ice sheet influences overrode local insolation influence on monsoon intensity. After the NH ice sheets had melted and a relatively stable interglacial temperature regime developed, precession-driven summer insolation became the dominant determinant of regional moisture balance, with anti-phased patterns of Holocene hydrological change in the northern and southern (sub)tropics, and a uniquely hybrid pattern on the East African equator. In the last 2-3000 years a series of multi-century droughts with links to

  14. Congruent qualitative behavior of complete and reconstructed phase space trajectories from biomolecular dynamics simulation.

    PubMed

    Caves, Leo S D; Verma, Chandra S

    2002-04-01

    Central to the study of a complex dynamical system is knowledge of its phase space behavior. Experimentally, it is rarely possible to record a system's (multidimensional) phase space variables. Rather, the system is observed via one (or few) scalar-valued signal(s) of emission or response. In dynamical systems analysis, the multidimensional phase space of a system can be reconstructed by manipulation of a one-dimensional signal. The trick is in the construction of a (higher-dimensional) space through the use of a time lag (or delay) on the signal time series. The trajectory in this embedding space can then be examined using phase portraits generated in selected subspaces. By contrast, in computer simulation, one has an embarrassment of riches: direct access to the complete multidimensional phase space variables, at arbitrary time resolution and precision. Here, the problem is one of reducing the dimensionality to make analysis tractable. This can be achieved through linear or nonlinear projection of the trajectory into subspaces containing high information content. This study considers trajectories of the small protein crambin from molecular dynamics simulations. The phase space behavior is examined using principal component analysis on the Cartesian coordinate covariance matrix of 138 dimensions. In addition, the phase space is reconstructed from a one dimensional signal, representing the radius of gyration of the structure along the trajectory. Comparison of low-dimensional phase portraits obtained from the two methods shows that the complete phase space distribution is well represented by the reconstruction. The study suggests that it may be possible to develop a deeper connection between the experimental and simulated dynamics of biomolecules via phase space reconstruction using data emerging from recent advances in single-molecule time-resolved biophysical techniques.

  15. A nonlinear correlation function for selecting the delay time in dynamical reconstructions

    NASA Astrophysics Data System (ADS)

    Aguirre, Luis Antonio

    1995-02-01

    Numerical results discussed in this paper suggest that a function which detects nonlinear correlations in time series usually indicates shorter correlation times than the linear autocorrelation function which is often used for this purpose. The nonlinear correlation function can also detect changes in the data which cannot be distinguished by the linear counterpart. This affects a number of approaches for the selection of the delay time used in the reconstruction of nonlinear dynamics from a single time series based on time delay coordinates.

  16. Regularized Reconstruction of Dynamic Contrast-Enhanced MR Images for Evaluation of Breast Lesions

    DTIC Science & Technology

    2009-09-01

    in determining the image estimate is computing the gradient of the cost function. We were able to accelerate our computation by exploiting Toeplitz ...but, to our knowledge, we are the first to apply it to dynamic MRI. For this study, the Toeplitz -modified algorithm was 1.7 times faster than the...Decreased computation time by exploiting Toeplitz matrices in our reconstruction. • Investigated choice of algorithms’ regularization parameters based on

  17. An Evaluation of Using Dynamical Downscaling to Reconstruct Historical Atmospheric Data

    NASA Astrophysics Data System (ADS)

    Mann, Hilary M.

    The purpose of this project is to determine whether climate data reconstruction by dynamical downscaling of NCEP/NCAR (National Centers for Environmental Prediction/National Center for Atmospheric Research) historical global reanalysis atmospheric data can provide an accurate input for hydrological models to be used in watersheds with limited ground observations. To do this, historical global reanalysis atmospheric data were dynamically downscaled to a 3km resolution over the Upper Feather, Yuba, and American River watersheds using the Fifth-Generation NCAR / Penn State Mesoscale Model (MM5). To validate the reconstructed precipitation, historical data from California Data Exchange Center (CDEC) stations were first used. However, the data that can be obtained from them are coarse throughout the watersheds, so historical data from PRISM (parameter-elevation regressions on independent slopes model) were also used. The observation data from CDEC stations were compared to the model-simulated (reconstructed) hourly, 72-hour, and monthly averaged precipitation data. These comparisons all had fairly accurate results, allowing the temporal accuracy of the model to be validated. PRISM observation data were used to compare the simulated monthly basin-average precipitation and its spatial distribution over each watershed. These comparisons showed very good results for timing and peak values. Consequently, it was determined that the current MM5 Mesoscale Model can produce the accurate precipitation field data by dynamical downscaling for use in practice.

  18. (2n × 1) Reconstructions of TiO2(011) Revealed by Noncontact Atomic Force Microscopy and Scanning Tunneling Microscopy.

    PubMed

    Pang, Chi Lun; Yurtsever, Ayhan; Onoda, Jo; Sugimoto, Yoshiaki; Thornton, Geoff

    2014-10-09

    We have used noncontact atomic force microscopy (NC-AFM) and scanning tunneling microscopy (STM) to study the rutile TiO2(011) surface. A series of (2n × 1) reconstructions were observed, including two types of (4 × 1) reconstruction. High-resolution NC-AFM and STM images indicate that the (4 × 1)-α phase has the same structural elements as the more widely reported (2 × 1) reconstruction. An array of analogous higher-order (2n × 1) reconstructions were also observed where n = 3-5. On the other hand, the (4 × 1)-β reconstruction seems to be a unique structure without higher-order analogues. A model is proposed for this structure that is also based on the (2 × 1) reconstruction but with additional microfacets of {111} character.

  19. (2n × 1) Reconstructions of TiO2(011) Revealed by Noncontact Atomic Force Microscopy and Scanning Tunneling Microscopy

    PubMed Central

    2014-01-01

    We have used noncontact atomic force microscopy (NC-AFM) and scanning tunneling microscopy (STM) to study the rutile TiO2(011) surface. A series of (2n × 1) reconstructions were observed, including two types of (4 × 1) reconstruction. High-resolution NC-AFM and STM images indicate that the (4 × 1)-α phase has the same structural elements as the more widely reported (2 × 1) reconstruction. An array of analogous higher-order (2n × 1) reconstructions were also observed where n = 3–5. On the other hand, the (4 × 1)-β reconstruction seems to be a unique structure without higher-order analogues. A model is proposed for this structure that is also based on the (2 × 1) reconstruction but with additional microfacets of {111} character. PMID:25309642

  20. Dynamic force microscopy simulator (dForce): A tool for planning and understanding tapping and bimodal AFM experiments

    PubMed Central

    Guzman, Horacio V; Garcia, Pablo D

    2015-01-01

    Summary We present a simulation environment, dForce, which can be used for a better understanding of dynamic force microscopy experiments. The simulator presents the cantilever–tip dynamics for two dynamic AFM methods, tapping mode AFM and bimodal AFM. It can be applied for a wide variety of experimental situations in air or liquid. The code provides all the variables and parameters relevant in those modes, for example, the instantaneous deflection and tip–surface force, velocity, virial, dissipated energy, sample deformation and peak force as a function of time or distance. The simulator includes a variety of interactions and contact mechanics models to describe AFM experiments including: van der Waals, Hertz, DMT, JKR, bottom effect cone correction, linear viscoelastic forces or the standard linear solid viscoelastic model. We have compared two numerical integration methods to select the one that offers optimal accuracy and speed. The graphical user interface has been designed to facilitate the navigation of non-experts in simulations. Finally, the accuracy of dForce has been tested against numerical simulations performed during the last 18 years. PMID:25821676

  1. Dynamic joint and muscle forces during knee isokinetic exercise.

    PubMed

    Wei, S H

    2000-10-01

    Isokinetic exercise has been commonly used in knee rehabilitation, conditioning and research in the past two decades. Although many investigators have used various experimental and theoretical approaches to study the muscle and joint force involved in isokinetic knee extension and flexion exercises, only a few of these studies have actually distinguished between the tibiofemoral joint forces and muscle forces. Therefore, the objective of this study was to specify, via an eletromyography(EMG)-driven muscle force model of the knee, the magnitude of the tibiofemoral joint and muscle forces acting during isokinetic knee extension and flexion exercises. Fifteen subjects ranging from 21 to 36 years of age volunteered to participate in this study. A Kin Com exercise machine (Chattecx Corporation, Chattanooga, TN, U.S.A.) was used as the loading device. An EMG-driven muscle force model was used to predict muscle forces, and a biomechanical model was used to analyze two knee joint constraint forces; compression and shear force. The methods used in this study were shown to be valid and reliable (r > 0.84 andp < 0.05). The effects on the tibiofemoral joint force during knee isokinetic exercises were compared with several functional activities that were investigated by earlier researchers. The muscle forces generated during knee isokinetic exercise were also obtained. Based on the findings obtained in this study, several therapeutic justifications for knee rehabilitation are proposed.

  2. Nonlinear Dynamic Polarization Force on a Relativistic Test Particle in a Nonequilibrium Beam-Plasma System.

    DTIC Science & Technology

    1983-09-01

    Waves During Resonant Plasma Heating , Fiz. Pld my 6 (1980), 1105 (Sov. J. Plasma Phys., 6 (1980). 6081. 14 -%. .-:.-..v...of Clectromagnetic aves Wuring Resonant Plasma Heating , Fiz. Plazmy 6 (1980), 1105 (Soy. J. Plasma Phys., 6 (1980), 608). 16 %. ..... 4. THE NONLINEAR...DYNAMIC POLARIZATION FORCE + The dynamic polarization force Fdp on a test particle is given by the Lorentz force acting on the polarization charge

  3. Imaging and three-dimensional reconstruction of chemical groups inside a protein complex using atomic force microscopy

    NASA Astrophysics Data System (ADS)

    Kim, Duckhoe; Sahin, Ozgur

    2015-03-01

    Scanning probe microscopes can be used to image and chemically characterize surfaces down to the atomic scale. However, the localized tip-sample interactions in scanning probe microscopes limit high-resolution images to the topmost atomic layer of surfaces, and characterizing the inner structures of materials and biomolecules is a challenge for such instruments. Here, we show that an atomic force microscope can be used to image and three-dimensionally reconstruct chemical groups inside a protein complex. We use short single-stranded DNAs as imaging labels that are linked to target regions inside a protein complex, and T-shaped atomic force microscope cantilevers functionalized with complementary probe DNAs allow the labels to be located with sequence specificity and subnanometre resolution. After measuring pairwise distances between labels, we reconstruct the three-dimensional structure formed by the target chemical groups within the protein complex using simple geometric calculations. Experiments with the biotin-streptavidin complex show that the predicted three-dimensional loci of the carboxylic acid groups of biotins are within 2 Å of their respective loci in the corresponding crystal structure, suggesting that scanning probe microscopes could complement existing structural biological techniques in solving structures that are difficult to study due to their size and complexity.

  4. Rank-sparsity constrained, spectro-temporal reconstruction for retrospectively gated, dynamic CT

    NASA Astrophysics Data System (ADS)

    Clark, D. P.; Lee, C. L.; Kirsch, D. G.; Badea, C. T.

    2015-03-01

    Relative to prospective projection gating, retrospective projection gating for dynamic CT applications allows fast imaging times, minimizing the potential for physiological and anatomic variability. Preclinically, fast imaging is attractive due to the rapid clearance of low molecular weight contrast agents and the rapid heart rate of rodents. Clinically, retrospective gating is relevant for intraoperative C-arm CT. More generally, retrospective sampling provides an opportunity for significant reduction in x-ray dose within the framework of compressive sensing theory and sparsity-constrained iterative reconstruction. Even so, CT reconstruction from projections with random temporal sampling is a very poorly conditioned inverse problem, requiring high fidelity regularization to minimize variability in the reconstructed results. Here, we introduce a highly novel data acquisition and regularization strategy for spectro-temporal (5D) CT reconstruction from retrospectively gated projections. We show that by taking advantage of the rank-sparse structure and separability of the temporal and spectral reconstruction sub-problems, being able to solve each sub-problem independently effectively guarantees that we can solve both problems together. In this paper, we show 4D simulation results (2D + 2 energies + time) using the proposed technique and compare them with two competing techniques— spatio-temporal total variation minimization and prior image constrained compressed sensing. We also show in vivo, 5D (3D + 2 energies + time) myocardial injury data acquired in a mouse, reconstructing 20 data sets (10 phases, 2 energies) and performing material decomposition from data acquired over a single rotation (360°, dose: ~60 mGy).

  5. Three Dimensional Dynamic Model Based Wind Field Reconstruction from Lidar Data

    NASA Astrophysics Data System (ADS)

    Raach, Steffen; Schlipf, David; Haizmann, Florian; Cheng, Po Wen

    2014-06-01

    Using the inflowing horizontal and vertical wind shears for individual pitch controller is a promising method if blade bending measurements are not available. Due to the limited information provided by a lidar system the reconstruction of shears in real-time is a challenging task especially for the horizontal shear in the presence of changing wind direction. The internal model principle has shown to be a promising approach to estimate the shears and directions in 10 minutes averages with real measurement data. The static model based wind vector field reconstruction is extended in this work taking into account a dynamic reconstruction model based on Taylor's Frozen Turbulence Hypothesis. The presented method provides time series over several seconds of the wind speed, shears and direction, which can be directly used in advanced optimal preview control. Therefore, this work is an important step towards the application of preview individual blade pitch control under realistic wind conditions. The method is tested using a turbulent wind field and a detailed lidar simulator. For the simulation, the turbulent wind field structure is flowing towards the lidar system and is continuously misaligned with respect to the horizontal axis of the wind turbine. Taylor's Frozen Turbulence Hypothesis is taken into account to model the wind evolution. For the reconstruction, the structure is discretized into several stages where each stage is reduced to an effective wind speed, superposed with a linear horizontal and vertical wind shear. Previous lidar measurements are shifted using again Taylor's Hypothesis. The wind field reconstruction problem is then formulated as a nonlinear optimization problem, which minimizes the residual between the assumed wind model and the lidar measurements to obtain the misalignment angle and the effective wind speed and the wind shears for each stage. This method shows good results in reconstructing the wind characteristics of a three dimensional

  6. Forcing of stratospheric chemistry and dynamics during the Dalton Minimum

    NASA Astrophysics Data System (ADS)

    Anet, J. G.; Muthers, S.; Rozanov, E.; Raible, C. C.; Peter, T.; Stenke, A.; Shapiro, A. I.; Beer, J.; Steinhilber, F.; Brönnimann, S.; Arfeuille, F.; Brugnara, Y.; Schmutz, W.

    2013-06-01

    The response of atmospheric chemistry and climate to volcanic eruptions and a decrease in solar activity during the Dalton Minimum is investigated with the fully coupled atmosphere-ocean-chemistry general circulation model SOCOL-MPIOM covering the time period 1780 to 1840 AD. We carried out several sensitivity ensemble experiments to separate the effects of (i) reduced solar ultra-violet (UV) irradiance, (ii) reduced solar visible and near infrared irradiance, (iii) enhanced galactic cosmic ray intensity as well as less intensive solar energetic proton events and auroral electron precipitation, and (iv) volcanic aerosols. The introduced changes of UV irradiance and volcanic aerosols significantly influence stratospheric climate in the early 19th century, whereas changes in the visible part of the spectrum and energetic particles have smaller effects. A reduction of UV irradiance by 15% causes global ozone decrease below the stratopause reaching 8% in the midlatitudes at 5 hPa and a significant stratospheric cooling of up to 2 °C in the midstratosphere and to 6 °C in the lower mesosphere. Changes in energetic particle precipitation lead only to minor changes in the yearly averaged temperature fields in the stratosphere. Volcanic aerosols heat the tropical lower stratosphere allowing more water vapor to enter the tropical stratosphere, which, via HOx reactions, decreases upper stratospheric and mesospheric ozone by roughly 4%. Conversely, heterogeneous chemistry on aerosols reduces stratospheric NOx leading to a 12% ozone increase in the tropics, whereas a decrease in ozone of up to 5% is found over Antarctica in boreal winter. The linear superposition of the different contributions is not equivalent to the response obtained in a simulation when all forcing factors are applied during the DM - this effect is especially well visible for NOx/NOy. Thus, this study highlights the non-linear behavior of the coupled chemistry-climate system. Finally, we conclude that

  7. Molecular Dynamics Simulation of Atomic Force Microscopy at the Water-Muscovite Interface: Hydration Layer Structure and Force Analysis.

    PubMed

    Kobayashi, Kazuya; Liang, Yunfeng; Amano, Ken-ichi; Murata, Sumihiko; Matsuoka, Toshifumi; Takahashi, Satoru; Nishi, Naoya; Sakka, Tetsuo

    2016-04-19

    With the development of atomic force microscopy (AFM), it is now possible to detect the buried liquid-solid interfacial structure in three dimensions at the atomic scale. One of the model surfaces used for AFM is the muscovite surface because it is atomically flat after cleavage along the basal plane. Although it is considered that force profiles obtained by AFM reflect the interfacial structures (e.g., muscovite surface and water structure), the force profiles are not straightforward because of the lack of a quantitative relationship between the force and the interfacial structure. In the present study, molecular dynamics simulations were performed to investigate the relationship between the muscovite-water interfacial structure and the measured AFM force using a capped carbon nanotube (CNT) AFM tip. We provide divided force profiles, where the force contributions from each water layer at the interface are shown. They reveal that the first hydration layer is dominant in the total force from water even after destruction of the layer. Moreover, the lateral structure of the first hydration layer transcribes the muscovite surface structure. It resembles the experimentally resolved surface structure of muscovite in previous AFM studies. The local density profile of water between the tip and the surface provides further insight into the relationship between the water structure and the detected force structure. The detected force structure reflects the basic features of the atomic structure for the local hydration layers. However, details including the peak-peak distance in the force profile (force-distance curve) differ from those in the density profile (density-distance curve) because of disturbance by the tip.

  8. Comment on ``Experimental Free Energy Reconstruction From Single-Molecule Force Spectroscopy Using Jarzynski's Equality''

    SciTech Connect

    Friddle, R W

    2008-01-14

    Harris, Song and Kiang [1] (HSK) describe their results on reconstructing the free energy profiles for both the stretch of the titin polymer, and the unfolding of an individual I27 domain. The new finding reported in [1] is the measurement of the free energy barrier (or activation energy) to unfolding the I27 domain. Due to a misinterpretation of the mechanics involved, the free energy surface (and thus the energy barrier) to unfolding the I27 domain was not measured.

  9. Dynamic nuclear polarization in a magnetic resonance force microscope experiment.

    PubMed

    Issac, Corinne E; Gleave, Christine M; Nasr, Paméla T; Nguyen, Hoang L; Curley, Elizabeth A; Yoder, Jonilyn L; Moore, Eric W; Chen, Lei; Marohn, John A

    2016-04-07

    We report achieving enhanced nuclear magnetization in a magnetic resonance force microscope experiment at 0.6 tesla and 4.2 kelvin using the dynamic nuclear polarization (DNP) effect. In our experiments a microwire coplanar waveguide delivered radiowaves to excite nuclear spins and microwaves to excite electron spins in a 250 nm thick nitroxide-doped polystyrene sample. Both electron and proton spin resonance were observed as a change in the mechanical resonance frequency of a nearby cantilever having a micron-scale nickel tip. NMR signal, not observable from Curie-law magnetization at 0.6 T, became observable when microwave irradiation was applied to saturate the electron spins. The resulting NMR signal's size, buildup time, dependence on microwave power, and dependence on irradiation frequency was consistent with a transfer of magnetization from electron spins to nuclear spins. Due to the presence of an inhomogeneous magnetic field introduced by the cantilever's magnetic tip, the electron spins in the sample were saturated in a microwave-resonant slice 10's of nm thick. The spatial distribution of the nuclear polarization enhancement factor ε was mapped by varying the frequency of the applied radiowaves. The observed enhancement factor was zero for spins in the center of the resonant slice, was ε = +10 to +20 for spins proximal to the magnet, and was ε = -10 to -20 for spins distal to the magnet. We show that this bipolar nuclear magnetization profile is consistent with cross-effect DNP in a ∼10(5) T m(-1) magnetic field gradient. Potential challenges associated with generating and using DNP-enhanced nuclear magnetization in a nanometer-resolution magnetic resonance imaging experiment are elucidated and discussed.

  10. Dynamic concision for three-dimensional reconstruction of human organ built with virtual reality modelling language (VRML)*

    PubMed Central

    Yu, Zheng-yang; Zheng, Shu-sen; Chen, Lei-ting; He, Xiao-qian; Wang, Jian-jun

    2005-01-01

    This research studies the process of 3D reconstruction and dynamic concision based on 2D medical digital images using virtual reality modelling language (VRML) and JavaScript language, with a focus on how to realize the dynamic concision of 3D medical model with script node and sensor node in VRML. The 3D reconstruction and concision of body internal organs can be built with such high quality that they are better than those obtained from the traditional methods. With the function of dynamic concision, the VRML browser can offer better windows for man-computer interaction in real-time environment than ever before. 3D reconstruction and dynamic concision with VRML can be used to meet the requirement for the medical observation of 3D reconstruction and have a promising prospect in the fields of medical imaging. PMID:15973760

  11. Dynamic concision for three-dimensional reconstruction of human organ built with virtual reality modelling language (VRML).

    PubMed

    Yu, Zheng-yang; Zheng, Shu-sen; Chen, Lei-ting; He, Xiao-qian; Wang, Jian-jun

    2005-07-01

    This research studies the process of 3D reconstruction and dynamic concision based on 2D medical digital images using virtual reality modelling language (VRML) and JavaScript language, with a focus on how to realize the dynamic concision of 3D medical model with script node and sensor node in VRML. The 3D reconstruction and concision of body internal organs can be built with such high quality that they are better than those obtained from the traditional methods. With the function of dynamic concision, the VRML browser can offer better windows for man-computer interaction in real-time environment than ever before. 3D reconstruction and dynamic concision with VRML can be used to meet the requirement for the medical observation of 3D reconstruction and have a promising prospect in the fields of medical imaging.

  12. Cell Adhesion on Dynamic Supramolecular Surfaces Probed by Fluid Force Microscopy-Based Single-Cell Force Spectroscopy

    PubMed Central

    2017-01-01

    Biomimetic and stimuli-responsive cell-material interfaces are actively being developed to study and control various cell-dynamics phenomena. Since cells naturally reside in the highly dynamic and complex environment of the extracellular matrix, attempts are being made to replicate these conditions in synthetic biomaterials. Supramolecular chemistry, dealing with noncovalent interactions, has recently provided possibilities to incorporate such dynamicity and responsiveness in various types of architectures. Using a cucurbit[8]uril-based host–guest system, we have successfully established a dynamic and electrochemically responsive interface for the display of the integrin-specific ligand, Arg-Gly-Asp (RGD), to promote cell adhesion. Due to the weak nature of the noncovalent forces by which the components at the interface are held together, we expected that cell adhesion would also be weaker in comparison to traditional interfaces where ligands are usually immobilized by covalent linkages. To assess the stability and limitations of our noncovalent interfaces, we performed single-cell force spectroscopy studies using fluid force microscopy. This technique enabled us to measure rupture forces of multiple cells that were allowed to adhere for several hours on individual substrates. We found that the rupture forces of cells adhered to both the noncovalent and covalent interfaces were nearly identical for up to several hours. We have analyzed and elucidated the reasons behind this result as a combination of factors including the weak rupture force between linear Arg-Gly-Asp and integrin, high surface density of the ligand, and increase in effective concentration of the supramolecular components under spread cells. These characteristics enable the construction of highly dynamic biointerfaces without compromising cell-adhesive properties. PMID:28319669

  13. Cell Adhesion on Dynamic Supramolecular Surfaces Probed by Fluid Force Microscopy-Based Single-Cell Force Spectroscopy.

    PubMed

    Sankaran, Shrikrishnan; Jaatinen, Leena; Brinkmann, Jenny; Zambelli, Tomaso; Vörös, Janos; Jonkheijm, Pascal

    2017-04-25

    Biomimetic and stimuli-responsive cell-material interfaces are actively being developed to study and control various cell-dynamics phenomena. Since cells naturally reside in the highly dynamic and complex environment of the extracellular matrix, attempts are being made to replicate these conditions in synthetic biomaterials. Supramolecular chemistry, dealing with noncovalent interactions, has recently provided possibilities to incorporate such dynamicity and responsiveness in various types of architectures. Using a cucurbit[8]uril-based host-guest system, we have successfully established a dynamic and electrochemically responsive interface for the display of the integrin-specific ligand, Arg-Gly-Asp (RGD), to promote cell adhesion. Due to the weak nature of the noncovalent forces by which the components at the interface are held together, we expected that cell adhesion would also be weaker in comparison to traditional interfaces where ligands are usually immobilized by covalent linkages. To assess the stability and limitations of our noncovalent interfaces, we performed single-cell force spectroscopy studies using fluid force microscopy. This technique enabled us to measure rupture forces of multiple cells that were allowed to adhere for several hours on individual substrates. We found that the rupture forces of cells adhered to both the noncovalent and covalent interfaces were nearly identical for up to several hours. We have analyzed and elucidated the reasons behind this result as a combination of factors including the weak rupture force between linear Arg-Gly-Asp and integrin, high surface density of the ligand, and increase in effective concentration of the supramolecular components under spread cells. These characteristics enable the construction of highly dynamic biointerfaces without compromising cell-adhesive properties.

  14. Changes in the Dynamics of a Rössler Oscillator by an External Forcing

    NASA Astrophysics Data System (ADS)

    Amanda, C. Mathias; Paulo, C. Rech

    2013-03-01

    We report some results indicating changes in the observed dynamics of the Rössler model under the influence of external sinusoidal forcing. By varying the control parameters of the external sinusoidal forcing, namely the amplitude and the angular frequency, we show, through numerical simulations which include parameter planes and Lyapunov exponents, that the external forcing can produce both chaos-order and order-chaos transitions. We also show that the sinusoidal forcing may generate hyperchaos.

  15. New Dynamical Window onto the Landscape for Forced Protein Unfolding

    NASA Astrophysics Data System (ADS)

    Yew, Zu Thur; McLeish, Tom; Paci, Emanuele

    2008-12-01

    The unfolding of a protein by the application of an external force pulling two atoms of the protein can be detected by atomic force and optical tweezers technologies as have been broadly demonstrated in the past decade. Variation of the applied force results in a modulation of the free-energy barrier to unfolding and thus, the rate of the process, which is often assumed to have single exponential kinetics. It has been recently shown that it is experimentally feasible, through the use of force clamps, to estimate the distribution of unfolding times for a population of proteins initially in the native state. In this Letter we show how the analysis of such distributions under a range of forces can provide unique information about the underlying free-energy surface such as the height of the free-energy barrier, the preexponential factor and the force dependence of the unfolding kinetics without resorting to ad hoc kinetic models.

  16. Modeling Robot Dynamic Performance for Endpoint Force Control

    DTIC Science & Technology

    1988-08-01

    we consider is robot endpoint force control, also known as manipulator compliant motion control. Force control research has been quite popular...manipulator through a programmed trajectory consisting of a sequence of joint positions and velocities. Position and velocity sensors located at the robot ...may be located. 1.1 Force Control Research Background Research in robot compliant motion control has been in these areas: " Passive compliance schemes

  17. Dynamics and stability of mechanical systems with follower forces

    NASA Technical Reports Server (NTRS)

    Herrmann, G.

    1971-01-01

    A monograph on problems of stability of equilibrium of mechanical systems with follower forces is presented. Concepts of stability and criteria of stability are reviewed briefly, together with means of analytical specification of follower forces. Nondissipative systems with two degrees of freedom are discussed, and destabilizing effects due to various types of dissipative forces both in discrete and continuous systems, are treated. The analyses are accompanied by some quantative experiments and observations on demonstrational laboratory models.

  18. Jacobian weighted temporal total variation for motion compensated compressed sensing reconstruction of dynamic MRI.

    PubMed

    Royuela-Del-Val, Javier; Cordero-Grande, Lucilio; Simmross-Wattenberg, Federico; Martín-Fernández, Marcos; Alberola-López, Carlos

    2017-03-01

    To eliminate the need of spatial intraframe regularization in a recently reported dynamic MRI compressed-sensing-based reconstruction method with motion compensation and to increase its performance. We propose a new regularization metric based on the introduction of a spatial weighting measure given by the Jacobian of the estimated deformations. It shows convenient discretization properties and, as a byproduct, it also provides a theoretical support to a result reported by others based on an intuitive design. The method has been applied to the reconstruction of both short and long axis views of the heart of four healthy volunteers. Quantitative image quality metrics as well as straightforward visual assessment are reported. Short and long axis reconstructions of cardiac cine MRI sequences have shown superior results than previously reported methods both in terms of quantitative metrics and of visual assessment. Fine details are better preserved due to the lack of additional intraframe regularization, with no significant image artifacts even for an acceleration factor of 12. The proposed Jacobian Weighted temporal Total Variation results in better reconstructions of highly undersampled cardiac cine MRI than previously proposed methods and sets a theoretical ground for forward and backward predictors used elsewhere. Magn Reson Med 77:1208-1215, 2017. © 2016 International Society for Magnetic Resonance in Medicine. © 2016 International Society for Magnetic Resonance in Medicine.

  19. Source coding for transmission of reconstructed dynamic geometry: a rate-distortion-complexity analysis of different approaches

    NASA Astrophysics Data System (ADS)

    Mekuria, Rufael N.; Cesar, Pablo; Bulterman, Dick C. A.

    2014-09-01

    Live 3D reconstruction of a human as a 3D mesh with commodity electronics is becoming a reality. Immersive applications (i.e. cloud gaming, tele-presence) benefit from effective transmission of such content over a bandwidth limited link. In this paper we outline different approaches for compressing live reconstructed mesh geometry based on distributing mesh reconstruction functions between sender and receiver. We evaluate rate-performance-complexity of different configurations. First, we investigate 3D mesh compression methods (i.e. dynamic/static) from MPEG-4. Second, we evaluate the option of using octree based point cloud compression and receiver side surface reconstruction.

  20. Colon Stem Cell and Crypt Dynamics Exposed by Cell Lineage Reconstruction

    PubMed Central

    Itzkovitz, Shalev; Elbaz, Judith; Maruvka, Yosef E.; Segev, Elad; Shlush, Liran I.; Dekel, Nava; Shapiro, Ehud

    2011-01-01

    Stem cell dynamics in vivo are often being studied by lineage tracing methods. Our laboratory has previously developed a retrospective method for reconstructing cell lineage trees from somatic mutations accumulated in microsatellites. This method was applied here to explore different aspects of stem cell dynamics in the mouse colon without the use of stem cell markers. We first demonstrated the reliability of our method for the study of stem cells by confirming previously established facts, and then we addressed open questions. Our findings confirmed that colon crypts are monoclonal and that, throughout adulthood, the process of monoclonal conversion plays a major role in the maintenance of crypts. The absence of immortal strand mechanism in crypts stem cells was validated by the age-dependent accumulation of microsatellite mutations. In addition, we confirmed the positive correlation between physical and lineage proximity of crypts, by showing that the colon is separated into small domains that share a common ancestor. We gained new data demonstrating that colon epithelium is clustered separately from hematopoietic and other cell types, indicating that the colon is constituted of few progenitors and ruling out significant renewal of colonic epithelium from hematopoietic cells during adulthood. Overall, our study demonstrates the reliability of cell lineage reconstruction for the study of stem cell dynamics, and it further addresses open questions in colon stem cells. In addition, this method can be applied to study stem cell dynamics in other systems. PMID:21829376

  1. Resolving the phasing and forcing dynamics between North Atlantic climate and deep ocean circulation changes

    NASA Astrophysics Data System (ADS)

    Irvali, Nil; Ninnemann, Ulysses S.; Kleiven, Helga (Kikki) F.; Haflidason, Haflidi; Mjell, Tor L.

    2017-04-01

    Multidecadal changes in North Atlantic climate (e.g., AMO/AMV) have been attributed to changes in the Atlantic Meridional Overturning Circulation (AMOC) and suggested as a driver of overturning changes. While simulations find an in-phase relationship when AMOC modulates basin-wide climate, AMOC lags when basin scale climate is forced externally (e.g., volcanoes and solar). Unfortunately the observational records are too short to assess these multi-decadal scale dynamics. The surface climate reconstructions, based on annually resolved archives, have excellent time control raising the possibility for precise determination of phasing with other well dated records. Yet, all currently available reconstructions of deep ocean circulation have radiometric based age models; with inherent errors (±30-50 years minimum) preventing the determination of the absolute phasing between deep ocean circulation changes and AMO/AMV. In order to reduce these uncertainties we use stratigraphical appearance, abundance and geochemical composition of tephra grains from a high sedimentation rate site off the Gardar Drift, south of Iceland (GS06-144-09MC-D; 60˚ 19'N, 23˚ 58'W, 2081 m water depth). Identifying tephra layers (and their association) in the core and fingerprinting with known volcanic eruptions on Iceland provides absolute age markers. Combining these age markers with 210Pb and 14C AMS dates within the same core, we have built a new chronology for the core GS06-144-09MC-D. Changes in surface ocean hydrography and climate are further portrayed using planktonic foraminiferal δ18O, assemblage counts, modern analog technique derived sea surface temperatures and Mg/Ca paleothermometry. Records of Iceland Scotland Overflow Water (ISOW) vigor (Sortable Silt mean grain size; Mjell et al., 2016) and benthic carbon isotopes from the same core allow us to determine the absolute phasing between changes in basin-wide climate, deep ocean circulation, and deep water carbon chemistry spanning

  2. An airborne acoustic method to reconstruct a dynamically rough flow surface.

    PubMed

    Krynkin, Anton; Horoshenkov, Kirill V; Van Renterghem, Timothy

    2016-09-01

    Currently, there is no airborne in situ method to reconstruct with high fidelity the instantaneous elevation of a dynamically rough surface of a turbulent flow. This work proposes a holographic method that reconstructs the elevation of a one-dimensional rough water surface from airborne acoustic pressure data. This method can be implemented practically using an array of microphones deployed over a dynamically rough surface or using a single microphone which is traversed above the surface at a speed that is much higher than the phase velocity of the roughness pattern. In this work, the theory is validated using synthetic data calculated with the Kirchhoff approximation and a finite difference time domain method over a number of measured surface roughness patterns. The proposed method is able to reconstruct the surface elevation with a sub-millimeter accuracy and over a representatively large area of the surface. Since it has been previously shown that the surface roughness pattern reflects accurately the underlying hydraulic processes in open channel flow [e.g., Horoshenkov, Nichols, Tait, and Maximov, J. Geophys. Res. 118(3), 1864-1876 (2013)], the proposed method paves the way for the development of non-invasive instrumentation for flow mapping and characterization that are based on the acoustic holography principle.

  3. Force Generation and Dynamics of Individual Cilia under External Loading

    PubMed Central

    Hill, David B.; Swaminathan, Vinay; Estes, Ashley; Cribb, Jeremy; O'Brien, E. Timothy; Davis, C. William; Superfine, R.

    2010-01-01

    Abstract Motile cilia are unique multimotor systems that display coordination and periodicity while imparting forces to biological fluids. They play important roles in normal physiology, and ciliopathies are implicated in a growing number of human diseases. In this work we measure the response of individual human airway cilia to calibrated forces transmitted via spot-labeled magnetic microbeads. Cilia respond to applied forces by 1), a reduction in beat amplitude (up to an 85% reduction by 160–170 pN of force); 2), a decreased tip velocity proportionate to applied force; and 3), no significant change in beat frequency. Tip velocity reduction occurred in each beat direction, independently of the direction of applied force, indicating that the cilium is “driven” in both directions at all times. By applying a quasistatic force model, we deduce that axoneme stiffness is dominated by the rigidity of the microtubules, and that cilia can exert 62 ± 18 pN of force at the tip via the generation of 5.6 ± 1.6 pN/dynein head. PMID:20085719

  4. Forces, waves and emergent dynamics during collective cell migration

    NASA Astrophysics Data System (ADS)

    Trepat, Xavier

    2013-03-01

    A broad range of biological processes such as morphogenesis, tissue regeneration, and cancer invasion depend on the collective motion of cell groups. For a group of cells to migrate cohesively, it has long been suspected that each constituent cell must exert physical forces not only upon its extracellular matrix but also upon neighboring cells. I will present novel techniques to measure these distinct force components. Using these techniques, we unveiled an unexpectedly rich physical picture in which the distribution of physical forces is dominated by heterogeneity, cooperativity, and jamming. I will show, moreover, that these essential features of inter-cellular force transmission enable the propagation of a new type of mechanical wave during tissue growth. Finally, I will demonstrate that both in epithelial and endothelial cell sheets, forces and waves are mechanically linked to cell velocities through a newly discovered emergent mechanism of innately collective cell guidance: plithotaxis.

  5. Synchronous monitoring of muscle dynamics and muscle force for maximum isometric tetanus

    NASA Astrophysics Data System (ADS)

    Zakir Hossain, M.; Grill, Wolfgang

    2010-03-01

    Skeletal muscle is a classic example of a biological soft matter . At both macro and microscopic levels, skeletal muscle is exquisitely oriented for force generation and movement. In addition to the dynamics of contracting and relaxing muscle which can be monitored with ultrasound, variations in the muscle force are also expected to be monitored. To observe such force and sideways expansion variations synchronously for the skeletal muscle a novel detection scheme has been developed. As already introduced for the detection of sideways expansion variations of the muscle, ultrasonic transducers are mounted sideways on opposing positions of the monitored muscle. To detect variations of the muscle force, angle of pull of the monitored muscle has been restricted by the mechanical pull of the sonic force sensor. Under this condition, any variation in the time-of-flight (TOF) of the transmitted ultrasonic signals can be introduced by the variation of the path length between the transducers. The observed variations of the TOF are compared to the signals obtained by ultrasound monitoring for the muscle dynamics. The general behavior of the muscle dynamics and muscle force shows almost an identical concept. Since muscle force also relates the psychological boosting-up effects, the influence of boosting-up on muscle force and muscle dynamics can also be quantified form this study. Length-tension or force-length and force-velocity relationship can also be derived quantitatively with such monitoring.

  6. Cryotherapy with dynamic intermittent compression for analgesia after anterior cruciate ligament reconstruction. Preliminary study.

    PubMed

    Murgier, J; Cassard, X

    2014-05-01

    Cryotherapy is a useful adjunctive analgesic measure in patients with postoperative pain following anterior cruciate ligament (ACL) surgery. Either static permanent compression or dynamic intermittent compression can be added to increase the analgesic effect of cryotherapy. Our objective was to compare the efficacy of these two compression modalities combined with cryotherapy in relieving postoperative pain and restoring range of knee motion after ligament reconstruction surgery. When combined with cryotherapy, a dynamic and intermittent compression is associated with decreased analgesic drug requirements, less postoperative pain, and better range of knee motion compared to static compression. We conducted a case-control study of consecutive patients who underwent anterior cruciate ligament reconstruction at a single institution over a 3-month period. Both groups received the same analgesic drug protocol. One group was managed with cryotherapy and dynamic intermittent compression (Game Ready(®)) and the other with cryotherapy and static compression (IceBand(®)). Of 39 patients, 20 received dynamic and 19 static compression. In the post-anaesthesia recovery unit, the mean visual analogue scale (VAS) pain score was 2.4 (range, 0-6) with dynamic compression and 2.7 (0-7) with static compression (P=0.3); corresponding values were 1.85 (0-9) vs. 3 (0-8) (P=0.16) after 6 hours and 0.6 (0-3) vs. 1.14 (0-3) (P=0.12) at discharge. The cumulative mean tramadol dose per patient was 57.5mg (0-200mg) with dynamic compression and 128.6 mg (0-250 mg) with static compression (P=0.023); corresponding values for morphine were 0mg vs. 1.14 mg (0-8 mg) (P<0.05). Mean range of knee flexion at discharge was 90.5° (80°-100°) with dynamic compression and 84.5° (75°-90°) with static compression (P=0.0015). Dynamic intermittent compression combined with cryotherapy decreases analgesic drug requirements after ACL reconstruction and improves the postoperative recovery of range of knee

  7. Theoretical reconstruction of realistic dynamics of highly coarse-grained cis-1,4-polybutadiene melts

    NASA Astrophysics Data System (ADS)

    Lyubimov, I. Y.; Guenza, M. G.

    2013-03-01

    The theory to reconstruct the atomistic-level chain diffusion from the accelerated dynamics that is measured in mesoscale simulations of the coarse-grained system, is applied here to the dynamics of cis-1,4-polybutadiene melts where each chain is described as a soft interacting colloidal particle. The rescaling formalism accounts for the corrections in the dynamics due to the change in entropy and the change in friction that are a consequence of the coarse-graining procedure. By including these two corrections the dynamics is rescaled to reproduce the realistic dynamics of the system described at the atomistic level. The rescaled diffusion coefficient obtained from mesoscale simulations of coarse-grained cis-1,4-polybutadiene melts shows good agreement with data from united atom simulations performed by Tsolou et al. [Macromolecules 38, 1478 (2005)], 10.1021/ma0491210. The derived monomer friction coefficient is used as an input to the theory for cooperative dynamics that describes the internal dynamics of a polymer moving in a transient regions of slow cooperative motion in a liquid of macromolecules. Theoretically predicted time correlation functions show good agreement with simulations in the whole range of length and time scales in which data are available.

  8. Reconstruction of an inn fire scene using the Fire Dynamics Simulator (FDS) program.

    PubMed

    Chi, Jen-Hao

    2013-01-01

    An inn fire occurring in the middle of the night usually causes a great deal more injuries and deaths. This article examines the case study of an inn fire accident that resulted in the most serious casualties in Taiwan's history. Data based on the official fire investigation report and NFPA921 regulations are used, and the fire scenes are reconstructed using the latest Fire Dynamics Simulator (FDS) program from NIST. The personnel evacuation time and time variants for various fire hazard factors of reconstructive analysis clarify the reason for such a high number of casualties. It reveals that the FDS program has come to play an essential role in fire investigation. The close comparison between simulation result and the actual fire scene also provides fire prevention engineers, a possible utilization of FDS to examine the effects of improved schemes for fire safety of buildings.

  9. Reconstruction of noise-driven nonlinear dynamic networks with some hidden nodes

    NASA Astrophysics Data System (ADS)

    Chen, Yang; Zhang, ChaoYang; Chen, TianYu; Wang, ShiHong; Hu, Gang

    2017-07-01

    The problem of network reconstruction, particularly exploring unknown network structures by analyzing measurable output data from networks, has attracted significant interest in many interdisciplinary fields in recent times. In practice, networks may be very large, and data can often be measured for only some of the nodes in a network while data for other variables are hidden. It is thus crucial to be able to infer networks from partial data. In this article, we study the problem of noise-driven nonlinear networks with some hidden nodes. Various difficulties appear jointly: nonlinearity of network dynamics, the impact of strong noise, the complexity of interaction structures between network nodes, and missing data from certain hidden nodes. We propose using high-order correlation to treat nonlinearity and structural complexity, two-time correlation to decorrelate noise, and higherorder derivatives to overcome the difficulties of hidden nodes. A closed form of network reconstruction is derived, and numerical simulations confirm the theoretical predictions.

  10. Simultaneous Reconstruction and Segmentation of Dynamic PET via Low-Rank and Sparse Matrix Decomposition.

    PubMed

    Chen, Shuhang; Liu, Huafeng; Hu, Zhenghui; Zhang, Heye; Shi, Pengcheng; Chen, Yunmei

    2015-07-01

    Although of great clinical value, accurate and robust reconstruction and segmentation of dynamic positron emission tomography (PET) images are great challenges due to low spatial resolution and high noise. In this paper, we propose a unified framework that exploits temporal correlations and variations within image sequences based on low-rank and sparse matrix decomposition. Thus, the two separate inverse problems, PET image reconstruction and segmentation, are accomplished in a simultaneous fashion. Considering low signal to noise ratio and piece-wise constant assumption of PET images, we also propose to regularize low-rank and sparse matrices with vectorial total variation norm. The resulting optimization problem is solved by augmented Lagrangian multiplier method with variable splitting. The effectiveness of proposed approach is validated on realistic Monte Carlo simulation datasets and the real patient data.

  11. Computerized X-ray reconstruction tomography in stereometric analysis of cardiovascular dynamics

    NASA Technical Reports Server (NTRS)

    Robb, R. A.; Harris, L. D.; Ritman, E. L.

    1977-01-01

    A computerized technique is proposed for obtaining cross-sectional images of the dynamic spatial distribution of X-ray attenuation covering the entire anatomic extent of the thorax and its contents in living dogs with a resolution of 1 mm and at time intervals of 1/60 sec. Use is made of an X-ray imaging chain which is a new high-performance video-fluoroscopic system, unique in its design and construction and called SSDSR for single source dynamic spatial reconstructor. This dynamic spatial reconstruction system is shown to provide the temporally and spatially coherent multiple cross sections required to obtain the full three-dimensional anatomic and simultaneous hemodynamic information necessary for detailed quantitative analyses of regional cardiopulmonary and vascular functions in both basic investigations of animals and clinical diagnostic applications to patients. Numerous photographs supplement the text.

  12. Dynamic SPECT reconstruction from few projections: a sparsity enforced matrix factorization approach

    NASA Astrophysics Data System (ADS)

    Ding, Qiaoqiao; Zan, Yunlong; Huang, Qiu; Zhang, Xiaoqun

    2015-02-01

    The reconstruction of dynamic images from few projection data is a challenging problem, especially when noise is present and when the dynamic images are vary fast. In this paper, we propose a variational model, sparsity enforced matrix factorization (SEMF), based on low rank matrix factorization of unknown images and enforced sparsity constraints for representing both coefficients and bases. The proposed model is solved via an alternating iterative scheme for which each subproblem is convex and involves the efficient alternating direction method of multipliers (ADMM). The convergence of the overall alternating scheme for the nonconvex problem relies upon the Kurdyka-Łojasiewicz property, recently studied by Attouch et al (2010 Math. Oper. Res. 35 438) and Attouch et al (2013 Math. Program. 137 91). Finally our proof-of-concept simulation on 2D dynamic images shows the advantage of the proposed method compared to conventional methods.

  13. Computerized X-ray reconstruction tomography in stereometric analysis of cardiovascular dynamics

    NASA Technical Reports Server (NTRS)

    Robb, R. A.; Harris, L. D.; Ritman, E. L.

    1977-01-01

    A computerized technique is proposed for obtaining cross-sectional images of the dynamic spatial distribution of X-ray attenuation covering the entire anatomic extent of the thorax and its contents in living dogs with a resolution of 1 mm and at time intervals of 1/60 sec. Use is made of an X-ray imaging chain which is a new high-performance video-fluoroscopic system, unique in its design and construction and called SSDSR for single source dynamic spatial reconstructor. This dynamic spatial reconstruction system is shown to provide the temporally and spatially coherent multiple cross sections required to obtain the full three-dimensional anatomic and simultaneous hemodynamic information necessary for detailed quantitative analyses of regional cardiopulmonary and vascular functions in both basic investigations of animals and clinical diagnostic applications to patients. Numerous photographs supplement the text.

  14. Reconstruction of Energy Surfaces from Friction Force Microscopy Measurements with the Jarzynski Equality

    NASA Astrophysics Data System (ADS)

    Berkovich, Ronen; Klafter, Joseph; Urbakh, Michael

    Free energy is one of the most fundamental thermodynamic functions, determining relative phase stability and serving as a generating function for other thermodynamic quantities. The calculation of free energies is a challenging enterprise. In equilibrium statistical mechanics, the free energy is related to the canonical partition function. The partition function itself involves integrations over all degrees of freedom in the system and, in most cases, cannot be easily calculated directly. In 1997, Jarzynski proved a remarkable equality that allows computing the equilibrium free-energy difference between two states from the probability distribution of the nonequilibrium work done on the system to switch between the two states. The Jarzynski equality provides a powerful free-energy difference estimator from a set of irreversible experiments. This method is closely related to free-energy perturbation approach, which is also a computational technique for estimating free-energy differences. The ability to map potential profiles and topologies is of major significance to areas as diverse as biological recognition and nanoscale friction. This capability has been demonstrated for frictional studies where a force between the tip of the scanning force microscope and the surface is probed. The surface free-energy corrugation produces a detectable friction forces. Thus, friction force microscopy (FFM) should be able to discriminate between energetically different areas on the probed surface. Here, we apply the Jarzynski equality for the analysis of FFM measurements and thus obtain a variation of the free energy along a surface.

  15. Reconstruction of the Tambora forcing with global aerosol models : Challenges and limitations

    NASA Astrophysics Data System (ADS)

    Khodri, Myriam; Zanchettin, Davide; Timmreck, Claudia

    2016-04-01

    It is now generally recognised that volcanic eruptions have an important effect on climate variability from inter-annual to decadal timescales. For the largest tropical volcanic eruptions of the last millennium, simulated volcanic surface cooling derived from climate models often disagrees with the cooling seen in tree-ring-based proxies. Furthermore, cooling estimates from simulations show large uncertainties. Such disagreement can be related to several sources, including inconsistency of the currently available volcanic forcing datasets, unrealistic modelled volcanic forcing, insufficient representation of relevant climate processes, and different background climate states simulated at the time of the eruption. In particular, for eruptions that occurred before the observational period forcing characteristics related to the eruption magnitude and stratospheric aerosol properties are deduced from indirect evidences. So, while climatically relevant forcing properties for recent volcanic eruptions are relatively well constrained by direct observations, large uncertainties remain regarding processes of aerosol formation and evolution in the stratosphere after large tropical eruptions of the remote past. Several coordinated modelling assessments have been defined to frame future modeling activities and constrain the above-mentioned uncertainties. Among these, the sixth phase of the Coupled Model Intercomparison Project (CMIP6) has endorsed a multi-model assessment focused on the climatic response to strong volcanic eruptions (VolMIP). VolMIP defines a protocol for idealized volcanic-perturbation experiments to improve comparability among climate model results. Identification of a consensual volcanic forcing dataset for the 1815 Tambora eruption is a key step of VolMIP, as it is the largest-magnitude volcanic eruption of the past five centuries and reference for the VolMIP core experiments. Therefore, as a first key step, five current/state-of-the-art global aerosol

  16. Dynamics of drag force for projectile impact in granular media

    NASA Astrophysics Data System (ADS)

    Behringer, Lauren; Stevens Bester, Cacey; Behringer, Robert

    2016-11-01

    We study the way in which momentum is dissipated as a free-falling projectile impacts a dense granular target. An empirical force law has been widely accepted to describe this process, defining the stopping force as the sum of depth-dependent static force and velocity-dependent inertial drag. However, a complete understanding of the stopping force, incorporating grain-scale interactions during impact, remains unresolved. Using direct force measurements by way of a photoelastic imaging technique, we explore the complex fluctuating behavior of the forces acting on the projectile decelerating through a granular medium. Our results are used to study the static drag as the projectile comes to rest, as well as its connection to the effect of the container boundary of the granular target. We additionally vary the shape of the impeding object to infer intruder-grain interactions from force measurements. Supported by Duke University Provost's Postdoctoral Program, NASA Grant NNX15AD38G, NSF-DMR-1206351.

  17. Analysis of dynamic foot pressure distribution and ground reaction forces

    NASA Astrophysics Data System (ADS)

    Ong, F. R.; Wong, T. S.

    2005-04-01

    The purpose of this study was to assess the relationship between forces derived from in-shoe pressure distribution and GRFs during normal gait. The relationship served to demonstrate the accuracy and reliability of the in-shoe pressure sensor. The in-shoe pressure distribution from Tekscan F-Scan system outputs vertical forces and Centre of Force (COF), while the Kistler force plate gives ground reaction forces (GRFs) in terms of Fz, Fx and Fy, as well as vertical torque, Tz. The two systems were synchronized for pressure and GRFs measurements. Data was collected from four volunteers through three trials for both left and right foot under barefoot condition with the in-shoe sensor. The forces derived from pressure distribution correlated well with the vertical GRFs, and the correlation coefficient (r2) was in the range of 0.93 to 0.99. This is a result of extended calibration, which improves pressure measurement to give better accuracy and reliability. The COF from in-shoe sensor generally matched well with the force plate COP. As for the maximum vertical torque at the forefoot during toe-off, there was no relationship with the pressure distribution. However, the maximum torque was shown to give an indication of the rotational angle of the foot.

  18. Towards myocardial contraction force image reconstruction for heart disease assessment and intervention planning

    NASA Astrophysics Data System (ADS)

    Haddad, Seyyed M. H.; Drangova, Maria; White, James A.; Samani, Abbas

    2015-03-01

    It is clinically vital to devise a technique to evaluate regional functionality of the myocardium in order to determine the extent and intensity of local damage to the cardiac tissue caused by ischemic injuries. Such a technique can potentially enable cardiologists to discriminate between reversible and irreversible ischemic injuries and to devise appropriate revascularization therapy in case of reversible lesions. The technique is founded on the premise that sufficient contraction force generated by the cardiac tissue can be regarded as a direct and reliable criterion for regional analysis of tissue healthy functionality. To this end, a number of imaging techniques have been developed and, to our knowledge, none of them assess regional cardiac functionality based on a straightforward mechanical measure such as local cardiac contraction forces. . As such, a novel imaging technique is being developed on the basis of quantification and visualisation of local myocardial contraction forces. In this technique, cardiac contraction force distribution is attained through solving an inverse problem within an optimization framework which uses iterative forward mechanical modelling of the myocardium. Hence, a forward mechanical model of the myocardium which is computationally efficient, robust, and adaptable to diverse pathophysiological conditions is necessary for this development. As such, this paper is geared towards developing a novel mechanical model of the healthy and pathological myocardium which considers all aspects of the myocardial mechanics including hyperelasticity, anisotropy, and active contraction force. In this investigation, two major parts, including background tissue and reinforcement bars (fibers) have been considered for modelling the myocardium. The model was implemented using finite element (FE) approach and demonstrated very good performance in simulating normal and infarcted left ventricle (LV) contractile function.

  19. Low dose dynamic CT myocardial perfusion imaging using a statistical iterative reconstruction method

    SciTech Connect

    Tao, Yinghua; Chen, Guang-Hong; Hacker, Timothy A.; Raval, Amish N.; Van Lysel, Michael S.; Speidel, Michael A.

    2014-07-15

    Purpose: Dynamic CT myocardial perfusion imaging has the potential to provide both functional and anatomical information regarding coronary artery stenosis. However, radiation dose can be potentially high due to repeated scanning of the same region. The purpose of this study is to investigate the use of statistical iterative reconstruction to improve parametric maps of myocardial perfusion derived from a low tube current dynamic CT acquisition. Methods: Four pigs underwent high (500 mA) and low (25 mA) dose dynamic CT myocardial perfusion scans with and without coronary occlusion. To delineate the affected myocardial territory, an N-13 ammonia PET perfusion scan was performed for each animal in each occlusion state. Filtered backprojection (FBP) reconstruction was first applied to all CT data sets. Then, a statistical iterative reconstruction (SIR) method was applied to data sets acquired at low dose. Image voxel noise was matched between the low dose SIR and high dose FBP reconstructions. CT perfusion maps were compared among the low dose FBP, low dose SIR and high dose FBP reconstructions. Numerical simulations of a dynamic CT scan at high and low dose (20:1 ratio) were performed to quantitatively evaluate SIR and FBP performance in terms of flow map accuracy, precision, dose efficiency, and spatial resolution. Results: Forin vivo studies, the 500 mA FBP maps gave −88.4%, −96.0%, −76.7%, and −65.8% flow change in the occluded anterior region compared to the open-coronary scans (four animals). The percent changes in the 25 mA SIR maps were in good agreement, measuring −94.7%, −81.6%, −84.0%, and −72.2%. The 25 mA FBP maps gave unreliable flow measurements due to streaks caused by photon starvation (percent changes of +137.4%, +71.0%, −11.8%, and −3.5%). Agreement between 25 mA SIR and 500 mA FBP global flow was −9.7%, 8.8%, −3.1%, and 26.4%. The average variability of flow measurements in a nonoccluded region was 16.3%, 24.1%, and 937

  20. Low dose dynamic CT myocardial perfusion imaging using a statistical iterative reconstruction method

    PubMed Central

    Tao, Yinghua; Chen, Guang-Hong; Hacker, Timothy A.; Raval, Amish N.; Van Lysel, Michael S.; Speidel, Michael A.

    2014-01-01

    Purpose: Dynamic CT myocardial perfusion imaging has the potential to provide both functional and anatomical information regarding coronary artery stenosis. However, radiation dose can be potentially high due to repeated scanning of the same region. The purpose of this study is to investigate the use of statistical iterative reconstruction to improve parametric maps of myocardial perfusion derived from a low tube current dynamic CT acquisition. Methods: Four pigs underwent high (500 mA) and low (25 mA) dose dynamic CT myocardial perfusion scans with and without coronary occlusion. To delineate the affected myocardial territory, an N-13 ammonia PET perfusion scan was performed for each animal in each occlusion state. Filtered backprojection (FBP) reconstruction was first applied to all CT data sets. Then, a statistical iterative reconstruction (SIR) method was applied to data sets acquired at low dose. Image voxel noise was matched between the low dose SIR and high dose FBP reconstructions. CT perfusion maps were compared among the low dose FBP, low dose SIR and high dose FBP reconstructions. Numerical simulations of a dynamic CT scan at high and low dose (20:1 ratio) were performed to quantitatively evaluate SIR and FBP performance in terms of flow map accuracy, precision, dose efficiency, and spatial resolution. Results: Forin vivo studies, the 500 mA FBP maps gave −88.4%, −96.0%, −76.7%, and −65.8% flow change in the occluded anterior region compared to the open-coronary scans (four animals). The percent changes in the 25 mA SIR maps were in good agreement, measuring −94.7%, −81.6%, −84.0%, and −72.2%. The 25 mA FBP maps gave unreliable flow measurements due to streaks caused by photon starvation (percent changes of +137.4%, +71.0%, −11.8%, and −3.5%). Agreement between 25 mA SIR and 500 mA FBP global flow was −9.7%, 8.8%, −3.1%, and 26.4%. The average variability of flow measurements in a nonoccluded region was 16.3%, 24.1%, and 937

  1. Force.

    ERIC Educational Resources Information Center

    Gamble, Reed

    1989-01-01

    Discusses pupil misconceptions concerning forces. Summarizes some of Assessment of Performance Unit's findings on meaning of (1) force, (2) force and motion in one dimension and two dimensions, and (3) Newton's second law. (YP)

  2. Force.

    ERIC Educational Resources Information Center

    Gamble, Reed

    1989-01-01

    Discusses pupil misconceptions concerning forces. Summarizes some of Assessment of Performance Unit's findings on meaning of (1) force, (2) force and motion in one dimension and two dimensions, and (3) Newton's second law. (YP)

  3. Reconstruction of auto-tissue-engineered lamellar cornea by dynamic culture for transplantation: a rabbit model.

    PubMed

    Wu, Zheng; Zhou, Qiang; Duan, Haoyun; Wang, Xiaoran; Xiao, Jianhui; Duan, Hucheng; Li, Naiyang; Li, Chaoyang; Wan, Pengxia; Liu, Ying; Song, Yiyue; Zhou, Chenjing; Huang, Zheqian; Wang, Zhichong

    2014-01-01

    To construct an auto-tissue-engineered lamellar cornea (ATELC) for transplantation, based on acellular porcine corneal stroma and autologous corneal limbal explants, a dynamic culture process, which composed of a submersion culture, a perfusion culture and a dynamic air-liquid interface culture, was performed using appropriate parameters. The results showed that the ATELC-Dynamic possessed histological structure and DNA content that were similar to native lamellar cornea (NLC, p>0.05). Compared to NLC, the protein contents of zonula occludens-1, desmocollin-2 and integrin β4 in ATELC-Dynamic reached 93%, 89% and 73%, respectively. The basal cells of ATELC-Dynamic showed a better differentiation phenotype (K3-, P63+, ABCG2+) compared with that of ATELC in static air-lift culture (ATELC-Static, K3+, P63-, ABCG2-). Accordingly, the cell-cloning efficiency of ATELC-Dynamic (9.72±3.5%) was significantly higher than that of ATELC-Static (2.13±1.46%, p<0.05). The levels of trans-epithelial electrical resistance, light transmittance and areal modulus variation in ATELC-Dynamic all reached those of NLC (p>0.05). Rabbit lamellar keratoplasty showed that the barrier function of ATELC-Dynamic was intact, and there were no signs of epithelial shedding or neovascularization. Furthermore, the ATELC-Dynamic group had similar optical properties and wound healing processes compared with the NLC group. Thus, the sequential dynamic culture process that was designed according to corneal physiological characteristics could successfully reconstruct an auto-lamellar cornea with favorable morphological characteristics and satisfactory physiological function.

  4. Modeling Multibody Stage Separation Dynamics Using Constraint Force Equation Methodology

    NASA Technical Reports Server (NTRS)

    Tartabini, Paul V.; Roithmayr, Carlos M.; Toniolo, Matthew D.; Karlgaard, Christopher D.; Pamadi, Bandu N.

    2011-01-01

    This paper discusses the application of the constraint force equation methodology and its implementation for multibody separation problems using three specially designed test cases. The first test case involves two rigid bodies connected by a fixed joint, the second case involves two rigid bodies connected with a universal joint, and the third test case is that of Mach 7 separation of the X-43A vehicle. For the first two cases, the solutions obtained using the constraint force equation method compare well with those obtained using industry- standard benchmark codes. For the X-43A case, the constraint force equation solutions show reasonable agreement with the flight-test data. Use of the constraint force equation method facilitates the analysis of stage separation in end-to-end simulations of launch vehicle trajectories

  5. Dynamical signatures of isometric force control as a function of age, expertise, and task constraints.

    PubMed

    Vieluf, Solveig; Sleimen-Malkoun, Rita; Voelcker-Rehage, Claudia; Jirsa, Viktor; Reuter, Eva-Maria; Godde, Ben; Temprado, Jean-Jacques; Huys, Raoul

    2017-07-01

    From the conceptual and methodological framework of the dynamical systems approach, force control results from complex interactions of various subsystems yielding observable behavioral fluctuations, which comprise both deterministic (predictable) and stochastic (noise-like) dynamical components. Here, we investigated these components contributing to the observed variability in force control in groups of participants differing in age and expertise level. To this aim, young (18-25 yr) as well as late middle-aged (55-65 yr) novices and experts (precision mechanics) performed a force maintenance and a force modulation task. Results showed that whereas the amplitude of force variability did not differ across groups in the maintenance tasks, in the modulation task it was higher for late middle-aged novices than for experts and higher for both these groups than for young participants. Within both tasks and for all groups, stochastic fluctuations were lowest where the deterministic influence was smallest. However, although all groups showed similar dynamics underlying force control in the maintenance task, a group effect was found for deterministic and stochastic fluctuations in the modulation task. The latter findings imply that both components were involved in the observed group differences in the variability of force fluctuations in the modulation task. These findings suggest that between groups the general characteristics of the dynamics do not differ in either task and that force control is more affected by age than by expertise. However, expertise seems to counteract some of the age effects.NEW & NOTEWORTHY Stochastic and deterministic dynamical components contribute to force production. Dynamical signatures differ between force maintenance and cyclic force modulation tasks but hardly between age and expertise groups. Differences in both stochastic and deterministic components are associated with group differences in behavioral variability, and observed behavioral

  6. Patient-Adaptive Reconstruction and Acquisition in Dynamic Imaging with Sensitivity Encoding (PARADISE)

    PubMed Central

    Sharif, Behzad; Derbyshire, J. Andrew; Faranesh, Anthony Z.; Bresler, Yoram

    2010-01-01

    MR imaging of the human heart without explicit cardiac synchronization promises to extend the applicability of cardiac MR to a larger patient population and potentially expand its diagnostic capabilities. However, conventional non-gated imaging techniques typically suffer from low image quality or inadequate spatio-temporal resolution and fidelity. Patient-Adaptive Reconstruction and Acquisition in Dynamic Imaging with Sensitivity Encoding (PARADISE) is a highly-accelerated non-gated dynamic imaging method that enables artifact-free imaging with high spatio-temporal resolutions by utilizing novel computational techniques to optimize the imaging process. In addition to using parallel imaging, the method gains acceleration from a physiologically-driven spatio-temporal support model; hence, it is doubly accelerated. The support model is patient-adaptive, i.e., its geometry depends on dynamics of the imaged slice, e.g., subject’s heart-rate and heart location within the slice. The proposed method is also doubly adaptive as it adapts both the acquisition and reconstruction schemes. Based on the theory of time-sequential sampling, the proposed framework explicitly accounts for speed limitations of gradient encoding and provides performance guarantees on achievable image quality. The presented in-vivo results demonstrate the effectiveness and feasibility of the PARADISE method for high resolution non-gated cardiac MRI during a short breath-hold. PMID:20665794

  7. Forced orthodontic extrusion and use of CAD/CAM for reconstruction of grossly destructed crown: A multidisciplinary approach

    PubMed Central

    Kumar, Rahul; Patil, Suvarna

    2012-01-01

    The aim of this study is to present a report of a case where forced orthodontic extrusion and computer-aided design and computer-aided manufacturing (CAD/CAM) technique was used for reconstruction of right maxillary central incisor with grossly destructed crown. Aesthetic rehabilitation of a fractured maxillary right central incisor was performed employing a multidisciplinary approach i.e. conventional endodontic treatment followed by orthodontic extrusion and final restoration using CAD-CAM and one piece milled zirconia post and core with full coverage zirconia crown. After the procedure being completed, periapical radiographs taken at 3 month follow up period demonstrated that the post and core remained well adapted to post space and there was a complete healing of periapical lesion. This technique can provide a complete aesthetic rehabilitation of a grossly destructed tooth without hampering the biological width and thus has a better prognosis. PMID:22557823

  8. A New Method for Reconstruction of Coronal Force-Free Magnetic Fields

    NASA Astrophysics Data System (ADS)

    Yi, Sibaek; Choe, Gwangson; Lim, Daye; Kim, Kap-Sung

    2016-04-01

    We present a new method for coronal magnetic field reconstruction based on vector magnetogram data. This method belongs to a variational method in that the magnetic energy of the system is decreased as the iteration proceeds. We employ a vector potential rather than the magnetic field vector in order to be free from the numerical divergence B problem. Whereas most methods employing three components of the magnetic field vector overspecify the boundary conditions, we only impose the normal components of magnetic field and current density as the bottom boundary conditions. Previous methods using a vector potential need to adjust the bottom boundary conditions continually, but we fix the bottom boundary conditions once and for all. To minimize the effect of the obscure lateral and top boundary conditions, we have adopted a nested grid system, which can accommodate as large as a computational domain without consuming as much computational resources. At the top boundary, we have implemented the source surface condition. We have tested our method with the analytic solution by Low & Lou (1990) as a reference. When the solution is given only at the bottom boundary, our method excels in most figures of merits devised by Schrijver et al. (2006). We have also applied our method to the active region AR 11974, in which two M class flares and a halo CME took place. Our reconstructed field shows three sigmoid structures in the lower corona and two interwound flux tubes in the upper corona. The former seem to cause the observed flares and the latter seem to be responsible for the global eruption, i.e., the CME.

  9. DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data.

    PubMed

    Schulz, Marcel H; Devanny, William E; Gitter, Anthony; Zhong, Shan; Ernst, Jason; Bar-Joseph, Ziv

    2012-08-16

    Modeling dynamic regulatory networks is a major challenge since much of the protein-DNA interaction data available is static. The Dynamic Regulatory Events Miner (DREM) uses a Hidden Markov Model-based approach to integrate this static interaction data with time series gene expression leading to models that can determine when transcription factors (TFs) activate genes and what genes they regulate. DREM has been used successfully in diverse areas of biological research. However, several issues were not addressed by the original version. DREM 2.0 is a comprehensive software for reconstructing dynamic regulatory networks that supports interactive graphical or batch mode. With version 2.0 a set of new features that are unique in comparison with other softwares are introduced. First, we provide static interaction data for additional species. Second, DREM 2.0 now accepts continuous binding values and we added a new method to utilize TF expression levels when searching for dynamic models. Third, we added support for discriminative motif discovery, which is particularly powerful for species with limited experimental interaction data. Finally, we improved the visualization to support the new features. Combined, these changes improve the ability of DREM 2.0 to accurately recover dynamic regulatory networks and make it much easier to use it for analyzing such networks in several species with varying degrees of interaction information. DREM 2.0 provides a unique framework for constructing and visualizing dynamic regulatory networks. DREM 2.0 can be downloaded from: http://www.sb.cs.cmu.edu/drem.

  10. Segregated and overlapping neural circuits exist for the production of static and dynamic precision grip force

    PubMed Central

    Neely, Kristina A.; Coombes, Stephen A.; Planetta, Peggy J.; Vaillancourt, David E.

    2011-01-01

    A central topic in sensorimotor neuroscience is the static-dynamic dichotomy that exists throughout the nervous system. Previous work examining motor unit synchronization reports that the activation strategy and timing of motor units differ for static and dynamic tasks. However, it remains unclear whether segregated or overlapping blood-oxygen-level-dependent (BOLD) activity exists in the brain for static and dynamic motor control. This study compared the neural circuits associated with the production of static force to those associated with the production of dynamic force pulses. To that end, healthy young adults (n = 17) completed static and dynamic precision grip force tasks during functional magnetic resonance imaging (fMRI). Both tasks activated core regions within the visuomotor network, including primary and sensory motor cortices, premotor cortices, multiple visual areas, putamen, and cerebellum. Static force was associated with unique activity in a right-lateralized cortical network including inferior parietal lobe, ventral premotor cortex, and dorsolateral prefrontal cortex. In contrast, dynamic force was associated with unique activity in left-lateralized and midline cortical regions, including supplementary motor area, superior parietal lobe, fusiform gyrus, and visual area V3. These findings provide the first neuroimaging evidence supporting a lateralized pattern of brain activity for the production of static and dynamic precision grip force. PMID:22109998

  11. Segregated and overlapping neural circuits exist for the production of static and dynamic precision grip force.

    PubMed

    Neely, Kristina A; Coombes, Stephen A; Planetta, Peggy J; Vaillancourt, David E

    2013-03-01

    A central topic in sensorimotor neuroscience is the static-dynamic dichotomy that exists throughout the nervous system. Previous work examining motor unit synchronization reports that the activation strategy and timing of motor units differ for static and dynamic tasks. However, it remains unclear whether segregated or overlapping blood-oxygen-level-dependent (BOLD) activity exists in the brain for static and dynamic motor control. This study compared the neural circuits associated with the production of static force to those associated with the production of dynamic force pulses. To that end, healthy young adults (n = 17) completed static and dynamic precision grip force tasks during functional magnetic resonance imaging (fMRI). Both tasks activated core regions within the visuomotor network, including primary and sensory motor cortices, premotor cortices, multiple visual areas, putamen, and cerebellum. Static force was associated with unique activity in a right-lateralized cortical network including inferior parietal lobe, ventral premotor cortex, and dorsolateral prefrontal cortex. In contrast, dynamic force was associated with unique activity in left-lateralized and midline cortical regions, including supplementary motor area, superior parietal lobe, fusiform gyrus, and visual area V3. These findings provide the first neuroimaging evidence supporting a lateralized pattern of brain activity for the production of static and dynamic precision grip force.

  12. Flight Dynamics of Flexible Aircraft with Aeroelastic and Inertial Force Interactions

    NASA Technical Reports Server (NTRS)

    Nguyen, Nhan T.; Tuzcu, Ilhan

    2009-01-01

    This paper presents an integrated flight dynamic modeling method for flexible aircraft that captures coupled physics effects due to inertial forces, aeroelasticity, and propulsive forces that are normally present in flight. The present approach formulates the coupled flight dynamics using a structural dynamic modeling method that describes the elasticity of a flexible, twisted, swept wing using an equivalent beam-rod model. The structural dynamic model allows for three types of wing elastic motion: flapwise bending, chordwise bending, and torsion. Inertial force coupling with the wing elasticity is formulated to account for aircraft acceleration. The structural deflections create an effective aeroelastic angle of attack that affects the rigid-body motion of flexible aircraft. The aeroelastic effect contributes to aerodynamic damping forces that can influence aerodynamic stability. For wing-mounted engines, wing flexibility can cause the propulsive forces and moments to couple with the wing elastic motion. The integrated flight dynamics for a flexible aircraft are formulated by including generalized coordinate variables associated with the aeroelastic-propulsive forces and moments in the standard state-space form for six degree-of-freedom flight dynamics. A computational structural model for a generic transport aircraft has been created. The eigenvalue analysis is performed to compute aeroelastic frequencies and aerodynamic damping. The results will be used to construct an integrated flight dynamic model of a flexible generic transport aircraft.

  13. Muscle force estimation with surface EMG during dynamic muscle contractions: a wavelet and ANN based approach.

    PubMed

    Bai, Fengjun; Chew, Chee-Meng

    2013-01-01

    Human muscle force estimation is important in biomechanics studies, sports and assistive devices fields. Therefore, it is essential to develop an efficient algorithm to estimate force exerted by muscles. The purpose of this study is to predict force/torque exerted by muscles under dynamic muscle contractions based on continuous wavelet transform (CWT) and artificial neural networks (ANN) approaches. Mean frequency (MF) of the surface electromyography (EMG) signals power spectrum was calculated from CWT. ANN models were trained to derive the MF-force relationships from the subset of EMG signals and the measured forces. Then we use the networks to predict the individual muscle forces for different muscle groups. Fourteen healthy subjects (10 males and 4 females) were voluntarily recruited in this study. EMG signals were collected from the biceps brachii, triceps, hamstring and quadriceps femoris muscles to evaluate the proposed method. Root mean square errors (RMSE) and correlation coefficients between the predicted forces and measured actual forces were calculated.

  14. Model-based reconstruction for undersampled dynamic contrast-enhanced MRI

    NASA Astrophysics Data System (ADS)

    Felsted, Ben K.; Whitaker, Ross T.; Schabel, Matthias; DiBella, Edward V. R.

    2009-02-01

    This paper describes a method for estimating, from dynamic contrast-enhanced MRI raw k-space data of the breast, parameter maps that model tissue properties associated with a compartmental model of contrast exchange. The contrast agent kinetics, as represented by these parameter maps, are important in distinguishing benign and malignant tumors. The proposed model-based reconstruction algorithm estimates tissue parameter maps directly from MRI k-space data, thereby allowing a new and improved set of spatiotemporal resolution and noise tradeoffs. Realistic noise levels and an undersampling factor of R=4 appeared to provide reasonable accuracy for the kinetic parameters of interest.

  15. DynamicRoots: A Software Platform for the Reconstruction and Analysis of Growing Plant Roots.

    PubMed

    Symonova, Olga; Topp, Christopher N; Edelsbrunner, Herbert

    2015-01-01

    We present a software platform for reconstructing and analyzing the growth of a plant root system from a time-series of 3D voxelized shapes. It aligns the shapes with each other, constructs a geometric graph representation together with the function that records the time of growth, and organizes the branches into a hierarchy that reflects the order of creation. The software includes the automatic computation of structural and dynamic traits for each root in the system enabling the quantification of growth on fine-scale. These are important advances in plant phenotyping with applications to the study of genetic and environmental influences on growth.

  16. Rapid acceleration in dogs: ground forces and body posture dynamics.

    PubMed

    Walter, Rebecca M; Carrier, David R

    2009-06-01

    Because the ability to accelerate rapidly is crucial to the survival and reproductive fitness of most terrestrial animals, it is important to understand how the biomechanics of rapid acceleration differs from that of steady-state locomotion. Here we compare rapid acceleration with high-speed galloping in dogs to investigate the ways in which body and limb posture and ground forces are altered to produce effective acceleration. Seven dogs were videotaped at 250 Hz as they performed ;maximum effort' accelerations, starting in a standing position on a force plate and one and two strides before it. These dogs began accelerations by rapidly flexing their ankles and knees as they dropped into a crouch. The crouched posture was maintained in the first accelerating stride such that the ankle and knee were significantly more flexed than during steady high-speed galloping. The hindlimb was also significantly more retracted over the first stance period than during high-speed galloping. Ground forces differed from steady-state locomotion in that rapidly accelerating dogs supported only 43% of their body weight with the forelimbs, compared with 56-64% in steady-state locomotion. The hindlimbs applied greater peak accelerating forces than the forelimbs, but the forelimbs contributed significantly to the dogs' acceleration by producing 43% of the total propulsive impulse. Kinematically, rapid acceleration differs from steady-state galloping in that the limbs are more flexed and more retracted, while the back undergoes greater pitching movement. Ground reaction forces also differ significantly from steady-state galloping in that almost no decelerating forces are applied while propulsive force impulses are three to six times greater.

  17. Analysis of limit forces on the vehicle wheels using an algorithm of Dynamic Square Method

    NASA Astrophysics Data System (ADS)

    Brukalski, M.

    2016-09-01

    This article presents a method named as Dynamic Square Method (DSM) used for dynamic analysis of a vehicle equipped with a four wheel drive system. This method allows determination of maximum (limit) forces acting on the wheels. Here, the maximum longitudinal forces acting on the wheels are assumed and then used to predict whether they can be achieved by a specific dynamic motion or whether the actual friction forces under a given wheel is large enough to transfer lateral forces. For the analysis of DSM a four wheel vehicle model is used. On the basis of this characteristic it is possible to determine the maximum longitudinal force acting on the wheels of the given axle depending on the lateral acceleration of the vehicle. The results of this analysis may be useful in the development of a control algorithm used for example in active differentials.

  18. Dynamics of bow-tie shaped bursting: Forced pendulum with dynamic feedback.

    PubMed

    Hongray, Thotreithem; Balakrishnan, Janaki

    2016-12-01

    A detailed study is performed on the parameter space of the mechanical system of a driven pendulum with damping and constant torque under feedback control. We report an interesting bow-tie shaped bursting oscillatory behaviour, which is exhibited for small driving frequencies, in a certain parameter regime, which has not been reported earlier in this forced system with dynamic feedback. We show that the bursting oscillations are caused because of a transition of the quiescent state to the spiking state by a saddle-focus bifurcation, and because of another saddle-focus bifurcation, which leads to cessation of spiking, bringing the system back to the quiescent state. The resting period between two successive bursts (Trest) is estimated analytically.

  19. Dynamics of bow-tie shaped bursting: Forced pendulum with dynamic feedback

    NASA Astrophysics Data System (ADS)

    Hongray, Thotreithem; Balakrishnan, Janaki

    2016-12-01

    A detailed study is performed on the parameter space of the mechanical system of a driven pendulum with damping and constant torque under feedback control. We report an interesting bow-tie shaped bursting oscillatory behaviour, which is exhibited for small driving frequencies, in a certain parameter regime, which has not been reported earlier in this forced system with dynamic feedback. We show that the bursting oscillations are caused because of a transition of the quiescent state to the spiking state by a saddle-focus bifurcation, and because of another saddle-focus bifurcation, which leads to cessation of spiking, bringing the system back to the quiescent state. The resting period between two successive bursts (Trest) is estimated analytically.

  20. WearDY: Wearable dynamics. A prototype for human whole-body force and motion estimation

    NASA Astrophysics Data System (ADS)

    Latella, Claudia; Kuppuswamy, Naveen; Nori, Francesco

    2016-06-01

    Motion capture is a powerful tool used in a large range of applications towards human movement analysis. Although it is a well-established technique, its main limitation is the lack of dynamic information such as forces and torques during the motion capture. In this paper, we present a novel approach for human wearable dynamic (WearDY) motion capture for the simultaneous estimation of whole-body forces along with the motion. Our conceptual framework encompasses traditional passive markers based methods, inertial and contact force sensor modalities and harnesses a probabilistic computational framework for estimating dynamic quantities originally proposed in the domain of humanoid robot control. We present preliminary experimental analysis of our framework on subjects performing a two Degrees-of-Freedom bowing task and we estimate the motion and dynamic quantities. We discuss the implication of our proposal towards the design of a novel wearable force and motion capture suit and its applications.

  1. Protein molecular dynamics with electrostatic force entirely determined by a single Poisson-Boltzmann calculation.

    PubMed

    Lu, Ben Zhuo; Chen, Wei Zu; Wang, Cun Xin; Xu, Xiao-jie

    2002-08-15

    The electrostatic force including the intramolecular Coulombic interactions and the electrostatic contribution of solvation effect were entirely calculated by using the finite difference Poisson-Boltzmann method (FDPB), which was incorporated into the GROMOS96 force field to complete a new finite difference stochastic dynamics procedure (FDSD). Simulations were performed on an insulin dimer. Different relative dielectric constants were successively assigned to the protein interior; a value of 17 was selected as optimal for our system. The simulation data were analyzed and compared with those obtained from 500-ps molecular dynamics (MD) simulation with explicit water and a 500-ps conventional stochastic dynamics (SD) simulation without the mean solvent force. The results indicate that the FDSD method with GROMOS96 force field is suitable to study the dynamics and structure of proteins in solution if used with the optimal protein dielectric constant. Copyright 2002 Wiley-Liss, Inc.

  2. Dynamical Casimir–Polder force on a partially dressed atom in a cavity comprising a dielectric

    SciTech Connect

    Yang, H.; Zheng, T.Y. Zhang, X.; Shao, X.Q.; Pan, S.M.

    2014-05-15

    We put a two-level atom into a cavity comprising a dielectric with output coupling. An analytical expression of the dynamical Casimir–Polder force in such a system is obtained when the system starts from a partially dressed state. And the effects of several relevant parameters of the system on the time-dependent force are also discussed. -- Highlights: •We get the dynamical CP force on a partially dressed atom in a dielectric cavity. •The force in this cavity is larger than that in infinite dielectric space. •The force is not symmetric with respect to the center of the cavity. •The oscillating time of the force increases with the cavity size.

  3. Dynamic measurement of the force required to move a liquid drop on a solid surface.

    PubMed

    Pilat, D W; Papadopoulos, P; Schäffel, D; Vollmer, D; Berger, R; Butt, H-J

    2012-12-11

    We measured the forces required to slide sessile drops over surfaces. The forces were measured by means of a vertical deflectable capillary stuck in the drop. The drop adhesion force instrument (DAFI) allowed the investigation of the dynamic lateral adhesion force of water drops of 0.1 to 2 μL volume at defined velocities. On flat PDMS surfaces, the dynamic lateral adhesion force increases linearly with the diameter of the contact area of the solid-liquid interface and linearly with the sliding velocity. The movement of the drop relative to the surfaces enabled us to resolve the pinning of the three-phase contact line to individual defects. We further investigated a 3D superhydrophobic pillar array. The depinning of the receding part of the rim of the drop occurred almost simultaneously from four to five pillars, giving rise to peaks in the lateral adhesion force.

  4. Dynamic 3D reconstructions of the heart wall from tomographic imaging

    NASA Astrophysics Data System (ADS)

    Lange, Joerg; von Smekal, Alexander

    1994-05-01

    We present a dynamic reconstruction of the left ventricle (LV) of the human heart. LV surface is represented by a set of points. The coordinates of these points are iterated by an artificial neural network while optimizing the match between the reconstruction based on these coordinates and the signal data. The input for the network are the segment's positions which represent the surface within the original data. The output is a set of real-valued coordinates quantifying the location of the LV surface points. The reconstruction is simultaneously developed in 3-D space and temporal domain. A topological constraint during training of the network gives corresponding vertices in space and time with global correctness. At any phase of the heart beat the network develops a map among the surface points which is highly ordered. This results in very regular wire-frames, that can be displayed rapidly on even small graphic workstations. Without time and third dimension this is very similar to Durbin's algorithm for solving the traveling salesman problem (TSP). To achieve a smooth representation we keep our network from developing the full TSP optimal solution.

  5. Optimized molecular reconstruction procedure combining hybrid reverse Monte Carlo and molecular dynamics

    SciTech Connect

    Bousige, Colin; Boţan, Alexandru; Coasne, Benoît; Ulm, Franz-Josef; Pellenq, Roland J.-M.

    2015-03-21

    We report an efficient atom-scale reconstruction method that consists of combining the Hybrid Reverse Monte Carlo algorithm (HRMC) with Molecular Dynamics (MD) in the framework of a simulated annealing technique. In the spirit of the experimentally constrained molecular relaxation technique [Biswas et al., Phys. Rev. B 69, 195207 (2004)], this modified procedure offers a refined strategy in the field of reconstruction techniques, with special interest for heterogeneous and disordered solids such as amorphous porous materials. While the HRMC method generates physical structures, thanks to the use of energy penalties, the combination with MD makes the method at least one order of magnitude faster than HRMC simulations to obtain structures of similar quality. Furthermore, in order to ensure the transferability of this technique, we provide rational arguments to select the various input parameters such as the relative weight ω of the energy penalty with respect to the structure optimization. By applying the method to disordered porous carbons, we show that adsorption properties provide data to test the global texture of the reconstructed sample but are only weakly sensitive to the presence of defects. In contrast, the vibrational properties such as the phonon density of states are found to be very sensitive to the local structure of the sample.

  6. New jacking system resolves dynamic forces in 400-ft jack up

    SciTech Connect

    Chevallier, J.; Turner, L.

    1984-08-27

    This article describes the design and operation of Trident IX a successfully applied jack up system. A summary of Trident IX's two years of operation in the Arabian Gulf and offshore West Africa is presented. The system is compared to conventional jacking systems in terms of design, operation, costs and safety. Dynamic forces at 400 ft. water depths are summarized, and design of the legs to withstand these dynamic forces and accomodate the new system are explained. Features are listed.

  7. A method of dose reconstruction for moving targets compatible with dynamic treatments

    SciTech Connect

    Rugaard Poulsen, Per; Lykkegaard Schmidt, Mai; Keall, Paul; Schjodt Worm, Esben; Fledelius, Walther; Hoffmann, Lone

    2012-10-15

    Purpose: To develop a method that allows a commercial treatment planning system (TPS) to perform accurate dose reconstruction for rigidly moving targets and to validate the method in phantom measurements for a range of treatments including intensity modulated radiation therapy (IMRT), volumetric arc therapy (VMAT), and dynamic multileaf collimator (DMLC) tracking. Methods: An in-house computer program was developed to manipulate Dicom treatment plans exported from a TPS (Eclipse, Varian Medical Systems) such that target motion during treatment delivery was incorporated into the plans. For each treatment, a motion including plan was generated by dividing the intratreatment target motion into 1 mm position bins and construct sub-beams that represented the parts of the treatment that were delivered, while the target was located within each position bin. For each sub-beam, the target shift was modeled by a corresponding isocenter shift. The motion incorporating Dicom plans were reimported into the TPS, where dose calculation resulted in motion including target dose distributions. For experimental validation of the dose reconstruction a thorax phantom with a moveable lung equivalent rod with a tumor insert of solid water was first CT scanned. The tumor insert was delineated as a gross tumor volume (GTV), and a planning target volume (PTV) was formed by adding margins. A conformal plan, two IMRT plans (step-and-shoot and sliding windows), and a VMAT plan were generated giving minimum target doses of 95% (GTV) and 67% (PTV) of the prescription dose (3 Gy). Two conformal fields with MLC leaves perpendicular and parallel to the tumor motion, respectively, were generated for DMLC tracking. All treatment plans were delivered to the thorax phantom without tumor motion and with a sinusoidal tumor motion. The two conformal fields were delivered with and without portal image guided DMLC tracking based on an embedded gold marker. The target dose distribution was measured with a

  8. A method of dose reconstruction for moving targets compatible with dynamic treatments

    PubMed Central

    Poulsen, Per Rugaard; Schmidt, Mai Lykkegaard; Keall, Paul; Worm, Esben Schjødt; Fledelius, Walther; Hoffmann, Lone

    2012-01-01

    Purpose: To develop a method that allows a commercial treatment planning system (TPS) to perform accurate dose reconstruction for rigidly moving targets and to validate the method in phantom measurements for a range of treatments including intensity modulated radiation therapy (IMRT), volumetric arc therapy (VMAT), and dynamic multileaf collimator (DMLC) tracking. Methods: An in-house computer program was developed to manipulate Dicom treatment plans exported from a TPS (Eclipse, Varian Medical Systems) such that target motion during treatment delivery was incorporated into the plans. For each treatment, a motion including plan was generated by dividing the intratreatment target motion into 1 mm position bins and construct sub-beams that represented the parts of the treatment that were delivered, while the target was located within each position bin. For each sub-beam, the target shift was modeled by a corresponding isocenter shift. The motion incorporating Dicom plans were reimported into the TPS, where dose calculation resulted in motion including target dose distributions. For experimental validation of the dose reconstruction a thorax phantom with a moveable lung equivalent rod with a tumor insert of solid water was first CT scanned. The tumor insert was delineated as a gross tumor volume (GTV), and a planning target volume (PTV) was formed by adding margins. A conformal plan, two IMRT plans (step-and-shoot and sliding windows), and a VMAT plan were generated giving minimum target doses of 95% (GTV) and 67% (PTV) of the prescription dose (3 Gy). Two conformal fields with MLC leaves perpendicular and parallel to the tumor motion, respectively, were generated for DMLC tracking. All treatment plans were delivered to the thorax phantom without tumor motion and with a sinusoidal tumor motion. The two conformal fields were delivered with and without portal image guided DMLC tracking based on an embedded gold marker. The target dose distribution was measured with a

  9. Reconstructing monsoon dynamics on the Tibetan Plateau using ostracod shell chemistry

    NASA Astrophysics Data System (ADS)

    Boerner, N.; De Baere, B.; Yang, Q.; Francois, R. H. G. M.; Jochum, K. P.; Frenzel, P.; Schwalb, A.

    2014-12-01

    Ostracod shells have widely been used as source material for geochemical analysis of stable isotope and trace element composition in paleolimnological reconstruction of lake hydrochemistry and climate as they provide insight into past water balance and solute evolution of lakes. During five fieldtrips to the Tibetan Plateau, taking place between 2008 and 2012, we collected live and sub-recent ostracods from 333 sites. Hydrochemical parameters, such as temperature, electrical conductivity, pH as well as major and minor ion concentrations were measured at each site and show high variability between sites. Adult intact individuals from the most common ostracod taxa were selected and their shell chemistry analyzed. The trace elemental data for the living ostracods compared to the hydrological data provides a calibration dataset for further hydrological and thus climatological reconstruction. Mg/Ca, Sr/Ca and Ba/Ca ratios in ostracod shells provide information about past water temperature and salinity resulting from changes in precipitation vs. evaporation ratios and monsoon activity. Furthermore, Mn/Ca, Fe/Ca and U/Ca ratios are being explored as redox indicators to reconstruct oxygenation cycles. To reconstruct the monsoon dynamics on the Tibetan Plateau, sediment cores from different lakes on an east-west transect were taken: two long sediment cores from lakes Nam Co and Tangra Yumco, covering the past 20,000 years, and a short core from Lake Taro Co. The lakes feature an alkaline environment but show significant differences in their electrical conductivity ranging from 0.99 mS/cm (Taro Co) and 1.8 mS/cm (Nam Co) to 12 mS/cm (Tangra Yumco). The chemical composition of valves of the most common ostracod species in these lakes, Leucocytherella sinensis, was analyzed using laser ablation ICP-MS. The reconstruction provides a more extensive insight in past precipitation - evaporation balance and lake level change and provides clues about the interaction between the

  10. Refolding dynamics of stretched biopolymers upon force quench

    PubMed Central

    Hyeon, Changbong; Morrison, Greg; Pincus, David L.; Thirumalai, D.

    2009-01-01

    Single-molecule force spectroscopy methods can be used to generate folding trajectories of biopolymers from arbitrary regions of the folding landscape. We illustrate the complexity of the folding kinetics and generic aspects of the collapse of RNA and proteins upon force quench by using simulations of an RNA hairpin and theory based on the de Gennes model for homopolymer collapse. The folding time, τF, depends asymmetrically on δfS = f S − f m and δf Q = f m − f Q where f S (f Q) is the stretch (quench) force and f m is the transition midforce of the RNA hairpin. In accord with experiments, the relaxation kinetics of the molecular extension, R(t), occurs in three stages: A rapid initial decrease in the extension is followed by a plateau and finally, an abrupt reduction in R(t) occurs as the native state is approached. The duration of the plateau increases as λ = τ Q/τ F decreases (where τ Q is the time in which the force is reduced from f S to f Q). Variations in the mechanisms of force-quench relaxation as λ is altered are reflected in the experimentally measurable time-dependent entropy, which is computed directly from the folding trajectories. An analytical solution of the de Gennes model under tension reproduces the multistage stage kinetics in R(t). The prediction that the initial stages of collapse should also be a generic feature of polymers is validated by simulation of the kinetics of toroid (globule) formation in semiflexible (flexible) homopolymers in poor solvents upon quenching the force from a fully stretched state. Our findings give a unified explanation for multiple disparate experimental observations of protein folding. PMID:19915145

  11. Dynamical Casimir-Polder force in a one-dimensional cavity with quasimodes

    SciTech Connect

    Tian, T.; Zheng, T. Y.; Wang, Z. H.; Zhang, X.

    2010-07-15

    In this article, we consider the dynamic Casimir-Polder force between an atom and a conducting wall in a one-dimensional cavity. Using quasimode theory to describe the dissipation of the electromagnetic fields in the cavity, our investigation shows that the force oscillations are damped in a short time, and tend to a final, steady, negative value. We discuss in detail the effects on the force of the quasimode decay rate, the cavity size, and the atom-wall distance.

  12. Dynamic Image Forces Near a Metal Surface and the Point-Charge Motion

    ERIC Educational Resources Information Center

    Gabovich, A. M.; Voitenko, A. I.

    2012-01-01

    The problem of charge motion governed by image force attraction near a plane metal surface is considered and solved self-consistently. The temporal dispersion of metal dielectric permittivity makes the image forces dynamic and, hence, finite, contrary to the results of the conventional approach. Therefore, the maximal attainable velocity turns out…

  13. Dynamic Image Forces Near a Metal Surface and the Point-Charge Motion

    ERIC Educational Resources Information Center

    Gabovich, A. M.; Voitenko, A. I.

    2012-01-01

    The problem of charge motion governed by image force attraction near a plane metal surface is considered and solved self-consistently. The temporal dispersion of metal dielectric permittivity makes the image forces dynamic and, hence, finite, contrary to the results of the conventional approach. Therefore, the maximal attainable velocity turns out…

  14. Force models for particle-dynamics simulations of granular materials

    SciTech Connect

    Walton, O.R.

    1994-12-01

    Engineering-mechanics contact models are utilized to describe the inelastic, frictional interparticle forces acting in dry granular systems. Simple analyses based on one-dimensional chains are utilized to illustrate wave propagation phenomena in dense and dilute discrete particulates. The variation of restitution coefficient with impact velocity is illustrated for a variety of viscous and hysteretic normal force models. The effects of interparticle friction on material strength in discrete-particle simulations are much closer to measured values than are theories that do not allow article rotations.

  15. Quantification of in-contact probe-sample electrostatic forces with dynamic atomic force microscopy

    NASA Astrophysics Data System (ADS)

    Balke, Nina; Jesse, Stephen; Carmichael, Ben; Baris Okatan, M.; Kravchenko, Ivan I.; Kalinin, Sergei V.; Tselev, Alexander

    2017-02-01

    Atomic force microscopy (AFM) methods utilizing resonant mechanical vibrations of cantilevers in contact with a sample surface have shown sensitivities as high as few picometers for detecting surface displacements. Such a high sensitivity is harnessed in several AFM imaging modes. Here, we demonstrate a cantilever-resonance-based method to quantify electrostatic forces on a probe in the probe-sample junction in the presence of a surface potential or when a bias voltage is applied to the AFM probe. We find that the electrostatic forces acting on the probe tip apex can produce signals equivalent to a few pm of surface displacement. In combination with modeling, the measurements of the force were used to access the strength of the electrical field at the probe tip apex in contact with a sample. We find an evidence that the electric field strength in the junction can reach ca. 1 V nm-1 at a bias voltage of a few volts and is limited by non-ideality of the tip-sample contact. This field is sufficiently strong to significantly influence material states and kinetic processes through charge injection, Maxwell stress, shifts of phase equilibria, and reduction of energy barriers for activated processes. Besides, the results provide a baseline for accounting for the effects of local electrostatic forces in electromechanical AFM measurements as well as offer additional means to probe ionic mobility and field-induced phenomena in solids.

  16. Quantification of In-Contact Probe-Sample Electrostatic Forces with Dynamic Atomic Force Microscopy.

    PubMed

    Balke, Nina; Jesse, Stephen; Carmichael, Ben; Okatan, M; Kravchenko, Ivan; Kalinin, Sergei; Tselev, Alexander

    2016-12-13

    Atomic Force Microscopy (AFM) methods utilizing resonant mechanical vibrations of cantilevers in contact with a sample surface have shown sensitivities as high as few picometers for detecting surface displacements. Such a high sensitivity is harnessed in several AFM imaging modes. Here, we demonstrate a cantilever-resonance-based method to quantify electrostatic forces on a probe in the probe-sample junction in the presence of a surface potential or when a bias voltage is applied to the AFM probe. We find that the electrostatic forces acting on the probe tip apex can produce signals equivalent to a few pm of surface displacement. In combination with modeling, the measurements of the force were used to access the strength of the electrical field at the probe tip apex in contact with a sample. We find an evidence that the electric field strength in the junction can reach ca. 1 V/nm at a bias voltage of a few volts and is limited by non-ideality of the tip-sample contact. This field is sufficiently strong to significantly influence material states and kinetic processes through charge injection, Maxwell stress, shifts of phase equilibria, and reduction of energy barriers for activated processes. Besides, the results provide a baseline for accounting for the effects of local electrostatic forces in electromechanical AFM measurements as well as offer additional means to probe ionic mobility and field-induced phenomena in solids.

  17. Quantification of in-contact probe-sample electrostatic forces with dynamic atomic force microscopy.

    PubMed

    Balke, Nina; Jesse, Stephen; Carmichael, Ben; Okatan, M Baris; Kravchenko, Ivan I; Kalinin, Sergei V; Tselev, Alexander

    2017-01-04

    Atomic force microscopy (AFM) methods utilizing resonant mechanical vibrations of cantilevers in contact with a sample surface have shown sensitivities as high as few picometers for detecting surface displacements. Such a high sensitivity is harnessed in several AFM imaging modes. Here, we demonstrate a cantilever-resonance-based method to quantify electrostatic forces on a probe in the probe-sample junction in the presence of a surface potential or when a bias voltage is applied to the AFM probe. We find that the electrostatic forces acting on the probe tip apex can produce signals equivalent to a few pm of surface displacement. In combination with modeling, the measurements of the force were used to access the strength of the electrical field at the probe tip apex in contact with a sample. We find an evidence that the electric field strength in the junction can reach ca. 1 V nm(-1) at a bias voltage of a few volts and is limited by non-ideality of the tip-sample contact. This field is sufficiently strong to significantly influence material states and kinetic processes through charge injection, Maxwell stress, shifts of phase equilibria, and reduction of energy barriers for activated processes. Besides, the results provide a baseline for accounting for the effects of local electrostatic forces in electromechanical AFM measurements as well as offer additional means to probe ionic mobility and field-induced phenomena in solids.

  18. Breast reconstruction with absorbable mesh sling: dynamic infrared thermography of skin envelope

    PubMed Central

    Hashimoto, Yoko; Yuasa, Takeshi; Suzuki, Yoshinori; Saisho, Hiroshi

    2017-01-01

    Background To immediate reconstruct ptosis breasts, we used polyglactin (Vicryl; Ethicon Inc., Somerville, NJ, USA) mesh as an inferolateral sling. However, Vicryl mesh is absorbable and losing function as a supporting structure. We doubt about the stability of the blood supply to the inferior part of the flap when it is in direct contact with inner implant. In this study, we examine the complications and the safety of the skin flap of this absorbable mesh sling (AMS) procedure. Methods The outcomes of 80 cases were examined, and the 1-year safety record of 40 cases was assessed. Complications were divided into minor complications, major complications requiring surgical intervention, and major complications requiring the reconstructive surgery to be halted. In addition, we examined the blood perfusion of the skin flap by dynamic infrared thermography (DIRT). Results Among 80 patients with AMS procedure, 73 breasts were reconstructed immediately and in one-stage. Complication outcomes are presented; there were 4 cases of minor flap necrosis (5%) and 4 of major complications resulting in surgical correction (5%). One patient required additional surgery, and the implant was moved into the musculocutaneous flap (1.3%). In 40 patients 1 year after surgery, DIRT showed significant decreased of blood perfusion in the ipsilateral inferior sites in comparison with the superior sites. Conclusions Blood perfusion was comparably insufficient in the inferior area of the reconstructed breast mound with AMS, where the pectoralis muscle could not be used to line the inside of the envelope. However, there were no severe flap complications due to ischemia. PMID:28210555

  19. Reconstructing the Dynamics of HIV Evolution within Hosts from Serial Deep Sequence Data

    PubMed Central

    Poon, Art F. Y.; Swenson, Luke C.; Bunnik, Evelien M.; Edo-Matas, Diana; Schuitemaker, Hanneke; van 't Wout, Angélique B.; Harrigan, P. Richard

    2012-01-01

    At the early stage of infection, human immunodeficiency virus (HIV)-1 predominantly uses the CCR5 coreceptor for host cell entry. The subsequent emergence of HIV variants that use the CXCR4 coreceptor in roughly half of all infections is associated with an accelerated decline of CD4+ T-cells and rate of progression to AIDS. The presence of a ‘fitness valley’ separating CCR5- and CXCR4-using genotypes is postulated to be a biological determinant of whether the HIV coreceptor switch occurs. Using phylogenetic methods to reconstruct the evolutionary dynamics of HIV within hosts enables us to discriminate between competing models of this process. We have developed a phylogenetic pipeline for the molecular clock analysis, ancestral reconstruction, and visualization of deep sequence data. These data were generated by next-generation sequencing of HIV RNA extracted from longitudinal serum samples (median 7 time points) from 8 untreated subjects with chronic HIV infections (Amsterdam Cohort Studies on HIV-1 infection and AIDS). We used the known dates of sampling to directly estimate rates of evolution and to map ancestral mutations to a reconstructed timeline in units of days. HIV coreceptor usage was predicted from reconstructed ancestral sequences using the geno2pheno algorithm. We determined that the first mutations contributing to CXCR4 use emerged about 16 (per subject range 4 to 30) months before the earliest predicted CXCR4-using ancestor, which preceded the first positive cell-based assay of CXCR4 usage by 10 (range 5 to 25) months. CXCR4 usage arose in multiple lineages within 5 of 8 subjects, and ancestral lineages following alternate mutational pathways before going extinct were common. We observed highly patient-specific distributions and time-scales of mutation accumulation, implying that the role of a fitness valley is contingent on the genotype of the transmitted variant. PMID:23133358

  20. Humans robustly adhere to dynamic walking principles by harnessing motor abundance to control forces.

    PubMed

    Toney, Megan E; Chang, Young-Hui

    2013-12-01

    Human walking dynamics are typically framed in the context of mechanics and energetics rather than in the context of neuromuscular control. Dynamic walking principles describe one helpful theoretical approach to characterize efficient human walking mechanics over many steps. These principles do not, however, address how such walking is controlled step-by-step despite small perturbations from natural variability. Our purpose was to identify neuromechanical control strategies used to achieve consistent and robust locomotion despite natural step-to-step force variability. We used the uncontrolled manifold concept to test whether human walkers select combinations of leading and trailing leg-forces that generate equivalent net-force trajectories during step-to-step transitions. Subjects selected leading and trailing leg-force combinations that generated consistent vertical net-force during step-to-step transitions. We conclude that vertical net-force is an implicit neuromechanical goal of human walking whose trajectory is stabilized for consistent step-to-step transitions, which agrees with the principles of dynamic walking. In contrast, inter-leg-force combinations modulated anterior-posterior net-force trajectories with each step to maintain constant walking speed, indicating that a consistent anterior-posterior net-force trajectory is not an implicit goal of walking. For a more complete picture of hierarchical locomotor control, we also tested whether each individual leg-force trajectory was stabilized through the selection of leg-force equivalent joint-torque combinations. The observed consistent vertical net-force trajectory was achieved primarily through the selection of joint-torque combinations that modulated trailing leg-force during step-to-step transitions. We conclude that humans achieve robust walking by harnessing inherent motor abundance of the joints and legs to maintain consistent step-by-step walking performance.

  1. On the optimal reconstruction and control of adaptive optical systems with mirror dynamics.

    PubMed

    Correia, Carlos; Raynaud, Henri-François; Kulcsár, Caroline; Conan, Jean-Marc

    2010-02-01

    In adaptive optics (AO) the deformable mirror (DM) dynamics are usually neglected because, in general, the DM can be considered infinitely fast. Such assumption may no longer apply for the upcoming Extremely Large Telescopes (ELTs) with DM that are several meters in diameter with slow and/or resonant responses. For such systems an important challenge is to design an optimal regulator minimizing the variance of the residual phase. In this contribution, the general optimal minimum-variance (MV) solution to the full dynamical reconstruction and control problem of AO systems (AOSs) is established. It can be looked upon as the parent solution from which simpler (used hitherto) suboptimal solutions can be derived as special cases. These include either partial DM-dynamics-free solutions or solutions derived from the static minimum-variance reconstruction (where both atmospheric disturbance and DM dynamics are neglected altogether). Based on a continuous stochastic model of the disturbance, a state-space approach is developed that yields a fully optimal MV solution in the form of a discrete-time linear-quadratic-Gaussian (LQG) regulator design. From this LQG standpoint, the control-oriented state-space model allows one to (1) derive the optimal state-feedback linear regulator and (2) evaluate the performance of both the optimal and the sub-optimal solutions. Performance results are given for weakly damped second-order oscillatory DMs with large-amplitude resonant responses, in conditions representative of an ELT AO system. The highly energetic optical disturbance caused on the tip/tilt (TT) modes by the wind buffeting is considered. Results show that resonant responses are correctly handled with the MV regulator developed here. The use of sub-optimal regulators results in prohibitive performance losses in terms of residual variance; in addition, the closed-loop system may become unstable for resonant frequencies in the range of interest.

  2. Reconstruction of an input function from a dynamic PET water image using multiple tissue curves

    NASA Astrophysics Data System (ADS)

    Kudomi, Nobuyuki; Maeda, Yukito; Yamamoto, Yuka; Nishiyama, Yoshihiro

    2016-08-01

    Quantification of cerebral blood flow (CBF) is important for the understanding of normal and pathologic brain physiology. When CBF is assessed using PET with {{\\text{H}}2} 15O or C15O2, its calculation requires an arterial input function, which generally requires invasive arterial blood sampling. The aim of the present study was to develop a new technique to reconstruct an image derived input function (IDIF) from a dynamic {{\\text{H}}2} 15O PET image as a completely non-invasive approach. Our technique consisted of using a formula to express the input using tissue curve with rate constant parameter. For multiple tissue curves extracted from the dynamic image, the rate constants were estimated so as to minimize the sum of the differences of the reproduced inputs expressed by the extracted tissue curves. The estimated rates were used to express the inputs and the mean of the estimated inputs was used as an IDIF. The method was tested in human subjects (n  =  29) and was compared to the blood sampling method. Simulation studies were performed to examine the magnitude of potential biases in CBF and to optimize the number of multiple tissue curves used for the input reconstruction. In the PET study, the estimated IDIFs were well reproduced against the measured ones. The difference between the calculated CBF values obtained using the two methods was small as around  <8% and the calculated CBF values showed a tight correlation (r  =  0.97). The simulation showed that errors associated with the assumed parameters were  <10%, and that the optimal number of tissue curves to be used was around 500. Our results demonstrate that IDIF can be reconstructed directly from tissue curves obtained through {{\\text{H}}2} 15O PET imaging. This suggests the possibility of using a completely non-invasive technique to assess CBF in patho-physiological studies.

  3. Estimation of changes in dynamic hydraulic force in a magnetically suspended centrifugal blood pump with transient computational fluid dynamics analysis.

    PubMed

    Masuzawa, Toru; Ohta, Akiko; Tanaka, Nobuatu; Qian, Yi; Tsukiya, Tomonori

    2009-01-01

    The effect of the hydraulic force on magnetically levitated (maglev) pumps should be studied carefully to improve the suspension performance and the reliability of the pumps. A maglev centrifugal pump, developed at Ibaraki University, was modeled with 926 376 hexahedral elements for computational fluid dynamics (CFD) analyses. The pump has a fully open six-vane impeller with a diameter of 72.5 mm. A self-bearing motor suspends the impeller in the radial direction. The maximum pressure head and flow rate were 250 mmHg and 14 l/min, respectively. First, a steady-state analysis was performed using commercial code STAR-CD to confirm the model's suitability by comparing the results with the real pump performance. Second, transient analysis was performed to estimate the hydraulic force on the levitated impeller. The impeller was rotated in steps of 1 degrees using a sliding mesh. The force around the impeller was integrated at every step. The transient analysis revealed that the direction of the radial force changed dynamically as the vane's position changed relative to the outlet port during one circulation, and the magnitude of this force was about 1 N. The current maglev pump has sufficient performance to counteract this hydraulic force. Transient CFD analysis is not only useful for observing dynamic flow conditions in a centrifugal pump but is also effective for obtaining information about the levitation dynamics of a maglev pump.

  4. Structure and Dynamics of Dinucleosomes Assessed by Atomic Force Microscopy

    DOE PAGES

    Filenko, Nina A.; Palets, Dmytro B.; Lyubchenko, Yuri L.

    2012-01-01

    Dynamics of nucleosomes and their interactions are important for understanding the mechanism of chromatin assembly. Internucleosomal interaction is required for the formation of higher-order chromatin structures. Although H1 histone is critically involved in the process of chromatin assembly, direct internucleosomal interactions contribute to this process as well. To characterize the interactions of nucleosomes within the nucleosome array, we designed a dinucleosome and performed direct AFM imaging. The analysis of the AFM data showed dinucleosomes are very dynamic systems, enabling the nucleosomes to move in a broad range along the DNA template. Di-nucleosomes in close proximity were observed, but their populationmore » was low. The use of the zwitterionic detergent, CHAPS, increased the dynamic range of the di-nucleosome, facilitating the formation of tight di-nucleosomes. The role of CHAPS and similar natural products in chromatin structure and dynamics is also discussed.« less

  5. Exploring the Contribution of Collective Motions to the Dynamics of Forced-Unfolding in Tubulin

    PubMed Central

    Joshi, Harshad; Momin, Farhana; Haines, Kelly E.; Dima, Ruxandra I.

    2010-01-01

    Abstract Decomposition of the intrinsic dynamics of proteins into collective motions among distant regions of the protein structure provides a physically appealing approach that couples the dynamics of the system with its functional role. The cellular functions of microtubules (an essential component of the cytoskeleton in all eukaryotic cells) depend on their dynamic instability, which is altered by various factors among which applied forces are central. To shed light on the coupling between forces and the dynamic instability of microtubules, we focus on the investigation of the response of the microtubule subunits (tubulin) to applied forces. We address this point by adapting an approach designed to survey correlations for the equilibrium dynamics of proteins to the case of correlations for proteins forced-dynamics. The resulting collective motions in tubulin have a number of functional implications, such as the identification of long-range couplings with a role in blocking the dynamic instability of microtubules. A fundamental implication of our study for the life of a cell is that, to increase the likelihood of unraveling of large cytoskeletal filaments under physiological forces, molecular motors must use a combination of pulling and torsion rather than just pulling. PMID:20159162

  6. Relationship between force-time and velocity-time characteristics of dynamic and isometric muscle actions.

    PubMed

    Khamoui, Andy V; Brown, Lee E; Nguyen, Diamond; Uribe, Brandon P; Coburn, Jared W; Noffal, Guillermo J; Tran, Tai

    2011-01-01

    Previous research has investigated the force-time curve characteristics of isometric and dynamic muscle actions; however, few studies have addressed their relationship to dynamic exercise velocity-time variables. The purpose of this study was to investigate relationships between velocity-time characteristics (high pull and vertical jump peak velocity and rate of velocity development [HPPV, HPRVD, VJPV, VJRVD]), force-time characteristics (isometric peak force [IsoPF], body mass adjusted isometric peak force [IsoPF/BM], isometric rate of force development at different millisecond windows [IsoRFD50-250], dynamic peak force [HPPF], body mass adjusted dynamic peak force [HPPF/BM]), and vertical jump height (VJHeight). Nineteen recreationally trained men (age 23.89 ± 2.92 yr; height 176.32 ± 7.06 cm; mass 78.76 ± 16.50 kg) completed 2 testing sessions. The first session consisted of 3 isometric mid-thigh pulls on a force plate with each repetition held for 3 seconds. On the second testing session, subjects completed 3 dynamic mid-thigh high pulls with 30% IsoPF followed by 3 vertical jumps on a force plate. The HPRVD correlated with IsoRFD50 (r = 0.52) and IsoRFD100 (r = 0.49). The HPPV correlated with IsoPF/BM (r = -0.60), IsoRFD50 (r = 0.56), and IsoRFD100 (r = 0.56). The VJHeight correlated with IsoPF/BM (r = 0.61), whereas VJPV correlated with IsoPF/BM (r = 0.62). These correlations suggest that explosive isometric force production within 50 to 100 milliseconds may influence the ability to accelerate an implement or body and attain high velocity, albeit in a moderate fashion. In addition, body mass adjusted strength may positively influence vertical jump parameters.

  7. The Role of Forcing and Internal Dynamics in explaining the 'Medieval Climate Anomaly'

    NASA Technical Reports Server (NTRS)

    Goossee, Hugues; Crespin, Elisabeth; Dubinkina, Svetlana; Loutre, Marie-France; Mann, Michael E.; Renssen, Hans; Shindell, Drew

    2012-01-01

    Proxy reconstructions suggest that peak global temperature during the past warm interval known as the Medieval Climate Anomaly (MCA, roughly 950-1250 AD) has been exceeded only during the most recent decades. To better understand the origin of this warm period, we use model simulations constrained by data assimilation establishing the spatial pattern of temperature changes that is most consistent with forcing estimates, model physics and the empirical information contained in paleoclimate proxy records. These numerical experiments demonstrate that the reconstructed spatial temperature pattern of the MCA can be explained by a simple thermodynamical response of the climate system to relatively weak changes in radiative forcing combined with a modification of the atmospheric circulation, displaying some similarities with the positive phase of the so-called Arctic Oscillation, and with northward shifts in the position of the Gulf Stream and Kuroshio currents. The mechanisms underlying the MCA are thus quite different from anthropogenic mechanisms responsible for modern global warming.

  8. Dynamic measurement and modeling of the Casimir force at the nanometer scale

    SciTech Connect

    Kohoutek, John; Wan, Ivy Yoke Leng; Mohseni, Hooman

    2010-02-08

    We present a dynamic method for measurement of the Casimir force with an atomic force microscope (AFM) with a conventional AFM tip. With this method, originally based on the phase of vibration of the AFM tip, we are able to verify the Casimir force at distances of nearly 6 nm with an AFM tip that has a radius of curvature of nearly 100 nm. Until now dynamic methods have been done using large metal spheres at greater distances. Also presented is a theoretical model based on the harmonic oscillator, including nonidealities. This model accurately predicts the experimental data.

  9. Microscopic Theory for the Role of Attractive Forces in the Dynamics of Supercooled Liquids.

    PubMed

    Dell, Zachary E; Schweizer, Kenneth S

    2015-11-13

    We formulate a microscopic, no adjustable parameter, theory of activated relaxation in supercooled liquids directly in terms of the repulsive and attractive forces within the framework of pair correlations. Under isochoric conditions, attractive forces can nonperturbatively modify slow dynamics, but at high enough density their influence vanishes. Under isobaric conditions, attractive forces play a minor role. High temperature apparent Arrhenius behavior and density-temperature scaling are predicted. Our results are consistent with recent isochoric simulations and isobaric experiments on a deeply supercooled molecular liquid. The approach can be generalized to treat colloidal gelation and glass melting, and other soft matter slow dynamics problems.

  10. Contact force history and dynamic response due to the impact of a soft projectile

    NASA Technical Reports Server (NTRS)

    Grady, J. E.

    1988-01-01

    A series of ballistic impact tests on several different instrumented targets was performed to characterize the dynamic contact force history resulting from the impact of a compliant projectile. The results show that the variation of contact force history with impact velocity does not follow the trends predicted by classical impact models. An empirical model was therefore developed to describe this behavior. This model was then used in a finite-element analysis to estimate the force history and calculate the resulting dynamic strain response in a transversely impacted composite laminate.

  11. Effects of asymmetric dynamic and isometric liftings on strength/force and rating of perceived exertion.

    PubMed

    Hattori, Y; Ono, Y; Shimaoka, M; Hiruta, S; Kamijima, M; Shibata, E; Ichihara, G; Ando, S; Villaneuva, M B; Takeuchi, Y

    1996-06-01

    A laboratory study was undertaken to determine the postural and physical characteristics and subjective stress during dynamic lifting of a usual load (10 kg) compared with during isometric lifting. The authors also aimed to clarify the effects of asymmetric lifting on these parameters. The subjects were thirteen male college students. They were asked to lift a box weighing 10 kg. They performed sixteen different lifting tasks from the floor to a height of 71 cm, involving a combination of three independent factors: two lifting modes (isometric lifting and dynamic lifting), four lifting angles in relation to the sagittal plane (sagittal plane, right 45 degree, right 90 degree and left 90 degree planes) and two lifting postures (squat and stoop). For each lifting task, strengths or forces and ground reaction forces were measured. At the end of each task, the authors asked the subjects to rate their perceived exertion (RPE) during lifting at ten sites of the body. Angle factor had a significant effect on isometric strengths and dynamic peak forces. Isometric strengths during the maximum 3 s were highest in lifting in the right 45 degree plane, followed by that in the sagittal plane, while those in the right 90 degree and left 90 degree planes were the lowest. However, peak forces in dynamic lifting were the highest in the lifting in the sagittal plane, followed by that in the right 45 degree plane, while those in the right 90 degree and left 90 degree planes were the lowest. Postural factor had a significant effect on height at peak force, which is higher in squat lifting than in stoop lifting. RPEs for the left arm, the backs and the right whole body in isometric lifting were significantly higher than in dynamic lifting of 10 kg. There were remarkably high RPEs for the ipsilateral thigh to the box in right 90 degree and left 90 degree planes during both isometric and dynamic liftings. Locations of the resultant force consisting of three component forces on the force

  12. Forces and Motion: Dynamics of the Tethered Satellite

    NASA Technical Reports Server (NTRS)

    1994-01-01

    In this 'Lift off to Learning' series, Loren Shriver, commander of STS 46, and the other members of the mission (Claude Nicollier, Marsha Ivins, Andrew Allen, Jeffrey Hoffman, Franklin Chiang-Diaz, and Franco Maerba) use computer graphics, and physical experiments to explain how the tethered satellite to be deployed during their mission will be raised, how it works, the influence of the Shuttle on the satellite and the satellite's influence on the Shuttle's orbit, the gravitational effects, and other effects concerning the Theoretical Physics used to plan this mission (gravity gradient force, center of mass, angular momentum, centrifugal force, and coriolis effect). This video ends with a discussion of the technology transfer and utilization of this tethered satellite concept and design.

  13. Further Evidence on the Dynamics of Self-Injurious Behaviors: Impact Forces and Limb Motions.

    ERIC Educational Resources Information Center

    Newell, Karl M.; Challis, John H.; Boros, Rhonda L.; Bodfish, James W.

    2002-01-01

    The dynamics of self-injurious behaviors were examined in 8 adults with mental retardation. Analysis of trajectories of the arm movements and impact forces of head blows found a high degree of cycle-to-cycle consistency in the qualitative dynamics of limb motions, indicating the motions are often stereotyped in nature. (Contains references.) (CR)

  14. Further Evidence on the Dynamics of Self-Injurious Behaviors: Impact Forces and Limb Motions.

    ERIC Educational Resources Information Center

    Newell, Karl M.; Challis, John H.; Boros, Rhonda L.; Bodfish, James W.

    2002-01-01

    The dynamics of self-injurious behaviors were examined in 8 adults with mental retardation. Analysis of trajectories of the arm movements and impact forces of head blows found a high degree of cycle-to-cycle consistency in the qualitative dynamics of limb motions, indicating the motions are often stereotyped in nature. (Contains references.) (CR)

  15. Vertical and lateral force mapping on the Si(111)-(7×7) surface by dynamic force microscopy

    NASA Astrophysics Data System (ADS)

    Sugimoto, Yoshiaki; Namikawa, Takashi; Miki, Koutaro; Abe, Masayuki; Morita, Seizo

    2008-05-01

    The topographic image of dynamic force microscopy (DFM) keeping the frequency shift (Δfz) constant at tiny cantilever oscillation amplitudes corresponds to the constant-vertical force (Fz) gradient surface, while the interpretation becomes complicated at larger oscillation amplitudes. We discuss how Fz and the potential energy (U) act on the tip during DFM topographic scan at various cantilever oscillation amplitudes by measuring the Δfz map on the Si(111)-(7×7) surface at room temperature. The Δfz map is numerically converted into Fz and U maps. DFM topographic curves at various cantilever oscillation amplitudes are numerically derived by using the experimentally obtained Fz map. In addition, we discuss how the lateral force (Fx) acts on the tip at various tip-surface distances on various surface sites by an Fx map converted from a U map. The positions at which Fx becomes zero are identified as U minimum sites, such as the top of adatom sites, and U maximum sites (equilibrium positions of Fx ), such as the center positions among three center adatoms. The tip deviated from these sites is then laterally attracted toward the U minimum sites. It is also demonstrated that lateral force microscopy performed at 1Å cantilever oscillation enables direct measurement of the lateral force gradient by numerically deriving the frequency shift (Δfx) caused by Fx .

  16. An Efficient Framework for Compressed Sensing Reconstruction of Highly Accelerated Dynamic Cardiac MRI

    NASA Astrophysics Data System (ADS)

    Ting, Samuel T.

    The research presented in this work seeks to develop, validate, and deploy practical techniques for improving diagnosis of cardiovascular disease. In the philosophy of biomedical engineering, we seek to identify an existing medical problem having significant societal and economic effects and address this problem using engineering approaches. Cardiovascular disease is the leading cause of mortality in the United States, accounting for more deaths than any other major cause of death in every year since 1900 with the exception of the year 1918. Cardiovascular disease is estimated to account for almost one-third of all deaths in the United States, with more than 2150 deaths each day, or roughly 1 death every 40 seconds. In the past several decades, a growing array of imaging modalities have proven useful in aiding the diagnosis and evaluation of cardiovascular disease, including computed tomography, single photon emission computed tomography, and echocardiography. In particular, cardiac magnetic resonance imaging is an excellent diagnostic tool that can provide within a single exam a high quality evaluation of cardiac function, blood flow, perfusion, viability, and edema without the use of ionizing radiation. The scope of this work focuses on the application of engineering techniques for improving imaging using cardiac magnetic resonance with the goal of improving the utility of this powerful imaging modality. Dynamic cine imaging, or the capturing of movies of a single slice or volume within the heart or great vessel region, is used in nearly every cardiac magnetic resonance imaging exam, and adequate evaluation of cardiac function and morphology for diagnosis and evaluation of cardiovascular disease depends heavily on both the spatial and temporal resolution as well as the image quality of the reconstruction cine images. This work focuses primarily on image reconstruction techniques utilized in cine imaging; however, the techniques discussed are also relevant to

  17. Absence of gamma-range corticomuscular coherence during dynamic force in a deafferented patient.

    PubMed

    Patino, Luis; Omlor, Wolfgang; Chakarov, Vihren; Hepp-Reymond, Marie-Claude; Kristeva, Rumyana

    2008-04-01

    Recently, we studied corticomuscular coherence (CMC) in a visuomotor task and showed for the first time gamma-range (30-45 Hz) CMC during isometric compensation of a periodically modulated dynamic force. We speculated that for the control of such forces, the sensorimotor system resonates at gamma-range frequencies to rapidly integrate the visual and proprioceptive information and produce the appropriate motor command. In this study, we tested the role of the proprioceptive afferent feedback on gamma-range CMC by comparing the deafferented patient GL to six age- and sex-matched subjects during the performance of a visuomotor force task consisting of isometric compensation of static and dynamic forces applied on the finger. Patient GL presented no significant gamma-band CMC during dynamic force. Instead, she had only beta-range CMC as in the static force condition; concurrently, her performance was significantly worse than that of the controls in both conditions. This gives support to the conclusions of our previous paper and suggests that proprioceptive information is mandatory in the genesis of gamma-band CMC during the generation and control of dynamic forces.

  18. Application of largest Lyapunov exponent analysis on the studies of dynamics under external forces

    NASA Astrophysics Data System (ADS)

    Odavić, Jovan; Mali, Petar; Tekić, Jasmina; Pantić, Milan; Pavkov-Hrvojević, Milica

    2017-06-01

    Dynamics of driven dissipative Frenkel-Kontorova model is examined by using largest Lyapunov exponent computational technique. Obtained results show that besides the usual way where behavior of the system in the presence of external forces is studied by analyzing its dynamical response function, the largest Lyapunov exponent analysis can represent a very convenient tool to examine system dynamics. In the dc driven systems, the critical depinning force for particular structure could be estimated by computing the largest Lyapunov exponent. In the dc+ac driven systems, if the substrate potential is the standard sinusoidal one, calculation of the largest Lyapunov exponent offers a more sensitive way to detect the presence of Shapiro steps. When the amplitude of the ac force is varied the behavior of the largest Lyapunov exponent in the pinned regime completely reflects the behavior of Shapiro steps and the critical depinning force, in particular, it represents the mirror image of the amplitude dependence of critical depinning force. This points out an advantage of this technique since by calculating the largest Lyapunov exponent in the pinned regime we can get an insight into the dynamics of the system when driving forces are applied. Additionally, the system is shown to be not chaotic even in the case of incommensurate structures and large amplitudes of external force, which is a consequence of overdampness of the model and the Middleton's no passing rule.

  19. The dynamics of electric powered wheelchair sideways tips and falls: experimental and computational analysis of impact forces and injury.

    PubMed

    Erickson, Brett; Hosseini, Masih A; Mudhar, Parry Singh; Soleimani, Maryam; Aboonabi, Arina; Arzanpour, Siamak; Sparrey, Carolyn J

    2016-03-02

    To reduce the occurrence of wheelchair falls and to develop effective protection systems, we aimed to quantify sideways tip and fall dynamics of electric power wheelchairs (EPWs). We hypothesized that driving speed, curb height and angle of approach would affect impact forces and head injury risk for wheelchair riders. We further expected that fall dynamics and head injury risk would be greater for unrestrained riders compared to restrained riders. Sideways wheelchair tip and fall dynamics were reconstructed using a remotely operated rear wheel drive EPW and a Hybrid III test dummy driving at different approach angles (5 to 63°) over an adjustable height curb (0.30 to 0.41 m) at speeds of 0.6-1.5 m/s. Rigid body dynamics models (Madymo, TASS International, Livonia, MI) were developed in parallel with the experiments to systematically study and quantify the impact forces and the sideways tip or fall of an EPW user in different driving conditions. Shallower approach angles (25°) (p < 0.05) and higher curbs (0.4 m) (p < 0.05) were the most significant predictors of tipping for restrained passengers. Unrestrained passengers were most affected by higher curbs (0.4 m) (p < 0.005) and fell forward from the upright wheelchair when the approach angle was 60°. Head impact forces were greater in unrestrained users (6181 ± 2372 N) than restrained users (1336 ± 827 N) (p = 0.00053). Unrestrained users had significantly greater head impact severities than restrained users (HIC = 610 ± 634 vs HIC = 29 ± 38, p = 0.00013) and several tip events resulted in HICs > 1000 (severe head injury) in unrestrained users. Sideways tips and forward falls from wheelchairs were most sensitive to curb height and approach angle but were not affected by driving speed. Sideways tips and falls resulted in impact forces that could result in concussions or traumatic brain injury and require injury prevention strategies. Seat belts eliminated

  20. Dynamics of rotating gaseous ellipsoid in external force fields

    NASA Astrophysics Data System (ADS)

    Tatematsu, Yoshinori; Fujimoto, Mitsuaki

    1990-04-01

    General and computationally-tractable equations are presented for the large-amplitude motion of a uniform gaseous ellipsoid rotating in an external force field. When this force is expressed as a linear function of the rectangular coordinates in the space under consideration, the equation of motion is reduced to a set of ordinary differential equations for the angular velocity, semimajor-axes of the ellipsoid, circulation, and temperature of the gaseous medium; they are integrated as an initial-value problem. Ad hoc (though fairly realistic) equations are used for cooling and viscosity to reproduce the gravitational contractions of the rotating gaseous ellipsoid. As one application, a series of equilibrium states of a uniform interstellar gas cloud in the tidal force of the Galaxy was determined, and their gravitational contraction was followed to a compact elongated structure. Two types of contractions are also found; the one is smooth contraction and the other is a violent one in which the prolate ellipsoid tumbles end-over-end with large-scale gas circulation within it.

  1. Attitude dynamics and control of spacecraft using geomagnetic Lorentz force

    NASA Astrophysics Data System (ADS)

    Abdel-Aziz, Yehia A.; Shoaib, Muhammad

    2015-01-01

    Attitude stabilization of a charged rigid spacecraft in Low Earth Orbit using torques due to Lorentz force in pitch and roll directions is considered. A spacecraft that generates an electrostatic charge on its surface in the Earth's magnetic field will be subject to perturbations from the Lorentz force. The Lorentz force acting on an electrostatically charged spacecraft may provide a useful thrust for controlling a spacecraft's orientation. We assume that the spacecraft is moving in the Earth's magnetic field in an elliptical orbit under the effects of gravitational, geomagnetic and Lorentz torques. The magnetic field of the Earth is modeled as a non-tilted dipole. A model incorporating all Lorentz torques as a function of orbital elements has been developed on the basis of electric and magnetic fields. The stability of the spacecraft orientation is investigated both analytically and numerically. The existence and stability of equilibrium positions is investigated for different values of the charge to mass ratio (α*). Stable orbits are identified for various values of α*. The main parameters for stabilization of the spacecraft are α* and the difference between the components of the moment of inertia for the spacecraft.

  2. Quasi-static and dynamic magnetic tension forces in arched, line-tied magnetic flux ropes

    SciTech Connect

    Myers, C. E.; Yamada, M.; Ji, H.; Yoo, J.; Jara-Almonte, J.; Fox, W.

    2016-11-22

    Solar eruptions are often driven by magnetohydrodynamic instabilities such as the torus and kink instabilities that act on line-tied magnetic flux ropes. We designed our recent laboratory experiments to study these eruptive instabilities which have demonstrated the key role of both dynamic (Myers et al 2015 Nature 528 526) and quasi-static (Myers et al 2016 Phys. Plasmas 23 112102) magnetic tension forces in contributing to the equilibrium and stability of line-tied magnetic flux ropes. In our paper, we synthesize these laboratory results and explore the relationship between the dynamic and quasi-static tension forces. And while the quasi-static tension force is found to contribute to the flux rope equilibrium in a number of regimes, the dynamic tension force is substantial mostly in the so-called failed torus regime where magnetic self-organization events prevent the flux rope from erupting.

  3. Quasi-static and dynamic magnetic tension forces in arched, line-tied magnetic flux ropes

    DOE PAGES

    Myers, C. E.; Yamada, M.; Ji, H.; ...

    2016-11-22

    Solar eruptions are often driven by magnetohydrodynamic instabilities such as the torus and kink instabilities that act on line-tied magnetic flux ropes. We designed our recent laboratory experiments to study these eruptive instabilities which have demonstrated the key role of both dynamic (Myers et al 2015 Nature 528 526) and quasi-static (Myers et al 2016 Phys. Plasmas 23 112102) magnetic tension forces in contributing to the equilibrium and stability of line-tied magnetic flux ropes. In our paper, we synthesize these laboratory results and explore the relationship between the dynamic and quasi-static tension forces. And while the quasi-static tension force ismore » found to contribute to the flux rope equilibrium in a number of regimes, the dynamic tension force is substantial mostly in the so-called failed torus regime where magnetic self-organization events prevent the flux rope from erupting.« less

  4. Quasi-static and dynamic magnetic tension forces in arched, line-tied magnetic flux ropes

    NASA Astrophysics Data System (ADS)

    Myers, C. E.; Yamada, M.; Ji, H.; Yoo, J.; Jara-Almonte, J.; Fox, W.

    2017-01-01

    Solar eruptions are often driven by magnetohydrodynamic instabilities such as the torus and kink instabilities that act on line-tied magnetic flux ropes. Recent laboratory experiments designed to study these eruptive instabilities have demonstrated the key role of both dynamic (Myers et al 2015 Nature 528 526) and quasi-static (Myers et al 2016 Phys. Plasmas 23 112102) magnetic tension forces in contributing to the equilibrium and stability of line-tied magnetic flux ropes. In this paper, we synthesize these laboratory results and explore the relationship between the dynamic and quasi-static tension forces. While the quasi-static tension force is found to contribute to the flux rope equilibrium in a number of regimes, the dynamic tension force is substantial mostly in the so-called failed torus regime where magnetic self-organization events prevent the flux rope from erupting.

  5. Static and Dynamic Performance Simulation of Direct-Acting Force Motor Valve

    NASA Astrophysics Data System (ADS)

    Ye, Xinghai; Ding, Jianjun; Zheng, Gang; Jiang, Kunpeng; Chen, Dongdong

    2017-07-01

    This work focuses on static and dynamic characteristics of direct-acting force motor valve. First, we analyzed the structure features and operating principle of the Mitsubishi-Hitachi force motor valve (FMV) and the operating principle of its internal permanent-magnet moving-coil force motor magnetic circuit, determined the transfer function of the FMV force motor system, and established a mathematical model for the system. Secondly, we established a static performance analysis model using the AMESIM software and utilized the model in combination with experimental results to analyze the effects of electro-hydraulic servo valve structural parameters on static characteristics. Lastly, we deduced the trajectory equation of the system, established the relationship between dynamic characteristic indexes and structural parameters, and analyzed the effects of different parameter values on the dynamic characteristics of the system. This research can provide a theoretical guidance for designing and manufacturing the FMV body.

  6. 4D maximum a posteriori reconstruction in dynamic SPECT using a compartmental model-based prior.

    PubMed

    Kadrmas, D J; Gullberg, G T

    2001-05-01

    A 4D ordered-subsets maximum a posteriori (OSMAP) algorithm for dynamic SPECT is described which uses a temporal prior that constrains each voxel's behaviour in time to conform to a compartmental model. No a priori limitations on kinetic parameters are applied; rather, the parameter estimates evolve as the algorithm iterates to a solution. The estimated parameters and time-activity curves are used within the reconstruction algorithm to model changes in the activity distribution as the camera rotates, avoiding artefacts due to inconsistencies of data between projection views. This potentially allows for fewer, longer-duration scans to be used and may have implications for noise reduction. The algorithm was evaluated qualitatively using dynamic 99mTc-teboroxime SPECT scans in two patients, and quantitatively using a series of simulated phantom experiments. The OSMAP algorithm resulted in images with better myocardial uniformity and definition, gave time-activity curves with reduced noise variations, and provided wash-in parameter estimates with better accuracy and lower statistical uncertainty than those obtained from conventional ordered-subsets expectation-maximization (OSEM) processing followed by compartmental modelling. The new algorithm effectively removed the bias in k21 estimates due to inconsistent projections for sampling schedules as slow as 60 s per timeframe, but no improvement in wash-out parameter estimates was observed in this work. The proposed dynamic OSMAP algorithm provides a flexible framework which may benefit a variety of dynamic tomographic imaging applications.

  7. There is no trade-off between speed and force in a dynamic lever system.

    PubMed

    McHenry, Matthew J

    2011-06-23

    Lever systems within a skeleton transmit force with a capacity determined by the mechanical advantage, A. A is the distance from input force to a joint, divided by the distance from the joint to the output force. A lever with a relatively high A in static equilibrium has a great capacity to generate force but moves a load over a small distance. Therefore, the geometry of a skeletal lever presents a trade-off between force and speed under quasi-static conditions. The present study considers skeletal dynamics that do not assume static equilibrium by modelling kicking by a locust leg, which is powered by stored elastic energy. This model predicts that the output force of this lever is proportional to A, but its maximum speed is independent of A. Therefore, no trade-off between force and velocity exists in a lever system with spring-mass dynamics. This demonstrates that the motion of a skeleton depends on the major forces that govern its dynamics and cannot be inferred from skeletal geometry alone.

  8. Force-time curve characteristics of dynamic and isometric muscle actions of elite women olympic weightlifters.

    PubMed

    Haff, G Gregory; Carlock, Jon M; Hartman, Michael J; Kilgore, J Lon; Kawamori, Naoki; Jackson, Janna R; Morris, Robert T; Sands, William A; Stone, Michael H

    2005-11-01

    Six elite women weightlifters were tested to evaluate force-time curve characteristics and intercorrelations of isometric and dynamic muscle actions. Subjects performed isometric and dynamic mid-thigh clean pulls at 30% of maximal isometric peak force and 100 kg from a standardized position on a 61.0 x 121.9 cm AMTI forceplate. Isometric peak force showed strong correlations to the athletes' competitive snatch, clean and jerk, and combined total (r = 0.93, 0.64, and 0.80 respectively). Isometric rate of force development showed moderate to strong relationships to the athletes' competitive snatch, clean and jerk, and combined total (r = 0.79, 0.69, and 0.80 respectively). The results of this study suggest that the ability to perform maximal snatch and clean and jerks shows some structural and functional foundation with the ability to generate high forces rapidly in elite women weightlifters.

  9. Accurate formula for conversion of tunneling current in dynamic atomic force spectroscopy

    NASA Astrophysics Data System (ADS)

    Sader, John E.; Sugimoto, Yoshiaki

    2010-07-01

    Recent developments in frequency modulation atomic force microscopy enable simultaneous measurement of frequency shift and time-averaged tunneling current. Determination of the interaction force is facilitated using an analytical formula, valid for arbitrary oscillation amplitudes [Sader and Jarvis, Appl. Phys. Lett. 84, 1801 (2004)]. Here we present the complementary formula for evaluation of the instantaneous tunneling current from the time-averaged tunneling current. This simple and accurate formula is valid for any oscillation amplitude and current law. The resulting theoretical framework allows for simultaneous measurement of the instantaneous tunneling current and interaction force in dynamic atomic force microscopy.

  10. Metabolic pathways reconstruction by frequency and amplitude response to forced glycolytic oscillations in yeast.

    PubMed

    Zimmerman, William B

    2005-10-05

    The hypothesis that frequency and amplitude response can be used in a complicated metabolic pathway kinetics model for optimal parameter estimation, as speculated by its successful prior usage for a mechanical oscillator and a heterogeneous chemical system, is tested here. Given the complexity of the glycolysis model of yeast chosen, this question is limited to three kinetics parameters of the 87 in the in vitro model developed in the literature. The direct application of the approach, used with the uninformed selection of operating conditions for the oscillation of external glucose concentration, led to miring the data assimilation process in local minima. Application of linear systems theory, however, identified two natural resonant frequencies that, when excited by external forced oscillations of the same frequency, result in the expression of many harmonics in the Fourier spectra, that is, information-rich experiments. A single such information-rich experiment at one of the resonant frequencies was sufficient to break away from the local minima to find the optimum kinetics parameter estimates. The resonant frequencies themselves represent oscillation modes in glycolysis akin to those previously observed. Furthermore, operation of the bioreactor with large amplitude oscillations of glucose feed (25%) leads to enhanced ethanol average yield by 1.6% at the resonant frequency.

  11. Calculation of structural dynamic forces and stresses using mode acceleration

    NASA Technical Reports Server (NTRS)

    Blelloch, Paul

    1989-01-01

    While the standard mode acceleration formulation in structural dynamics has often been interpreted to suggest that the reason for improved convergence obtainable is that the dynamic correction factor is divided by the modal frequencies-squared, an alternative formulation is presented which clearly indicates that the only difference between mode acceleration and mode displacement data recovery is the addition of a static correction term. Attention is given to the advantages in numerical implementation associated with this alternative, as well as to an illustrative example.

  12. Force adaptation transfers to untrained workspace regions in children: evidence for developing inverse dynamic motor models.

    PubMed

    Jansen-Osmann, Petra; Richter, Stefanie; Konczak, Jürgen; Kalveram, Karl-Theodor

    2002-03-01

    When humans perform goal-directed arm movements under the influence of an external damping force, they learn to adapt to these external dynamics. After removal of the external force field, they reveal kinematic aftereffects that are indicative of a neural controller that still compensates the no longer existing force. Such behavior suggests that the adult human nervous system uses a neural representation of inverse arm dynamics to control upper-extremity motion. Central to the notion of an inverse dynamic model (IDM) is that learning generalizes. Consequently, aftereffects should be observable even in untrained workspace regions. Adults have shown such behavior, but the ontogenetic development of this process remains unclear. This study examines the adaptive behavior of children and investigates whether learning a force field in one hemifield of the right arm workspace has an effect on force adaptation in the other hemifield. Thirty children (aged 6-10 years) and ten adults performed 30 degrees elbow flexion movements under two conditions of external damping (negative and null). We found that learning to compensate an external damping force transferred to the opposite hemifield, which indicates that a model of the limb dynamics rather than an association of visited space and experienced force was acquired. Aftereffects were more pronounced in the younger children and readaptation to a null-force condition was prolonged. This finding is consistent with the view that IDMs in children are imprecise neural representations of the actual arm dynamics. It indicates that the acquisition of IDMs is a developmental achievement and that the human motor system is inherently flexible enough to adapt to any novel force within the limits of the organism's biomechanics.

  13. A COMPARISON OF STATIC AND DYNAMIC OPTIMIZATION MUSCLE FORCE PREDICTIONS DURING WHEELCHAIR PROPULSION

    PubMed Central

    Morrow, Melissa M.; Rankin, Jeffery W.; Neptune, Richard R.; Kaufman, Kenton R.

    2014-01-01

    The primary purpose of this study was to compare static and dynamic optimization muscle force and work predictions during the push phase of wheelchair propulsion. A secondary purpose was to compare the differences in predicted shoulder and elbow kinetics and kinematics and handrim forces. The forward dynamics simulation minimized differences between simulated and experimental data (obtained from 10 manual wheelchair users) and muscle co-contraction. For direct comparison between models, the shoulder and elbow muscle moment arms and net joint moments from the dynamic optimization were used as inputs into the static optimization routine. RMS errors between model predictions were calculated to quantify model agreement. There was a wide range of individual muscle force agreement that spanned from poor (26.4 % Fmax error in the middle deltoid) to good (6.4 % Fmax error in the anterior deltoid) in the prime movers of the shoulder. The predicted muscle forces from the static optimization were sufficient to create the appropriate motion and joint moments at the shoulder for the push phase of wheelchair propulsion, but showed deviations in the elbow moment, pronation-supination motion and hand rim forces. These results suggest the static approach does not produce results similar enough to be a replacement for forward dynamics simulations, and care should be taken in choosing the appropriate method for a specific task and set of constraints. Dynamic optimization modeling approaches may be required for motions that are greatly influenced by muscle activation dynamics or that require significant co-contraction. PMID:25282075

  14. The Distributed Diagonal Force Decomposition Method for Parallelizing Molecular Dynamics Simulations

    PubMed Central

    Boršnik, Urban; Miller, Benjamin T.; Brooks, Bernard R.; Janežič, Dušanka

    2011-01-01

    Parallelization is an effective way to reduce the computational time needed for molecular dynamics simulations. We describe a new parallelization method, the distributed-diagonal force decomposition method, with which we extend and improve the existing force decomposition methods. Our new method requires less data communication during molecular dynamics simulations than replicated data and current force decomposition methods, increasing the parallel efficiency. It also dynamically load-balances the processors' computational load throughout the simulation. The method is readily implemented in existing molecular dynamics codes and it has been incorporated into the CHARMM program, allowing its immediate use in conjunction with the many molecular dynamics simulation techniques that are already present in the program. We also present the design of the Force Decomposition Machine, a cluster of personal computers and networks that is tailored to running molecular dynamics simulations using the distributed diagonal force decomposition method. The design is expandable and provides various degrees of fault resilience. This approach is easily adaptable to computers with Graphics Processing Units because it is independent of the processor type being used. PMID:21793007

  15. Force on Force Modeling with Formal Task Structures and Dynamic Geometry

    DTIC Science & Technology

    2017-03-24

    intended employment of available forces and resources through development of task organization; COA statements and sketches, execution matrices and other...Figure 48 Extract of Time Ordered Event List - Deliberate Attack Exploitation c. Platform Task and Collective Task Matrices . As explained previously, we...used Platform Task and Collective Task matrices to analyze and illustrate the relationships of the tasks to individual entities and entity types

  16. Nonparametric and data-driven data assimilation for the reconstruction of complex geophysical dynamics

    NASA Astrophysics Data System (ADS)

    Tandeo, Pierre; Ailliot, Pierre; Ruiz, Juan; Hannart, Alexis; Chapron, Bertrand; Cuzol, Anne; Monbet, Valérie; Le Goff, Clément; Lguensat, Redouane; Fablet, Ronan

    2015-04-01

    Nowadays, ocean, atmosphere and climate sciences face a deluge of data pouring from space, in situ monitoring as well as numerical simulations. The availability of these different data sources offer new opportunities, still largely underexploited, to improve the understanding, modeling and reconstruction of geophysical dynamics. The classical way to reconstruct the space-time dynamics of a geophysical system from observation series relies on data assimilation methods, which perform multiple runs of the known dynamical model. This classical framework may have severe limitations including its computational cost, the lack of consistency of the model with respect to the observed data, modeling uncertainties. Here, we explore an alternative approach and develop a fully data-driven framework. We assume that a representative catalog of examples of the space-time dynamics of the geophysical system of interest is available. Depending on the case-study, such a catalog may be issued from observations as well as numerical simulations. Based on this catalog, we combine machine learning and statistical sampling to address data assimilation as follows. The key idea is to design a nonparametric sampler of the dynamics of the considered geophysical system from the available catalog. We focus in this work on analog (also referred to as nearest-neighbor) methods. They provide us the mean for sampling forecast members with no online evaluation of the physical model. The combination of these members with the observations resorts to the classical stochastic filtering techniques, such as ensemble Kalman or particle filters and smoothers. As a proof concept, we demonstrate the relevance of the proposed data assimilation method for Lorenz-63 and Lorenz-96 chaotic dynamics. We compare different nonparametric sampling schemes as well as stochastic filters and evaluate how the size of the catalog and the dimensionality of the system affect assimilation performance. We show that our

  17. The Evolutionary Dynamics of Protein-Protein Interaction Networks Inferred from the Reconstruction of Ancient Networks

    PubMed Central

    Rattei, Thomas; Makse, Hernán A.

    2013-01-01

    Cellular functions are based on the complex interplay of proteins, therefore the structure and dynamics of these protein-protein interaction (PPI) networks are the key to the functional understanding of cells. In the last years, large-scale PPI networks of several model organisms were investigated. A number of theoretical models have been developed to explain both the network formation and the current structure. Favored are models based on duplication and divergence of genes, as they most closely represent the biological foundation of network evolution. However, studies are often based on simulated instead of empirical data or they cover only single organisms. Methodological improvements now allow the analysis of PPI networks of multiple organisms simultaneously as well as the direct modeling of ancestral networks. This provides the opportunity to challenge existing assumptions on network evolution. We utilized present-day PPI networks from integrated datasets of seven model organisms and developed a theoretical and bioinformatic framework for studying the evolutionary dynamics of PPI networks. A novel filtering approach using percolation analysis was developed to remove low confidence interactions based on topological constraints. We then reconstructed the ancient PPI networks of different ancestors, for which the ancestral proteomes, as well as the ancestral interactions, were inferred. Ancestral proteins were reconstructed using orthologous groups on different evolutionary levels. A stochastic approach, using the duplication-divergence model, was developed for estimating the probabilities of ancient interactions from today's PPI networks. The growth rates for nodes, edges, sizes and modularities of the networks indicate multiplicative growth and are consistent with the results from independent static analysis. Our results support the duplication-divergence model of evolution and indicate fractality and multiplicative growth as general properties of the PPI

  18. Dynamically adjustable foot-ground contact model to estimate ground reaction force during walking and running.

    PubMed

    Jung, Yihwan; Jung, Moonki; Ryu, Jiseon; Yoon, Sukhoon; Park, Sang-Kyoon; Koo, Seungbum

    2016-03-01

    Human dynamic models have been used to estimate joint kinetics during various activities. Kinetics estimation is in demand in sports and clinical applications where data on external forces, such as the ground reaction force (GRF), are not available. The purpose of this study was to estimate the GRF during gait by utilizing distance- and velocity-dependent force models between the foot and ground in an inverse-dynamics-based optimization. Ten males were tested as they walked at four different speeds on a force plate-embedded treadmill system. The full-GRF model whose foot-ground reaction elements were dynamically adjusted according to vertical displacement and anterior-posterior speed between the foot and ground was implemented in a full-body skeletal model. The model estimated the vertical and shear forces of the GRF from body kinematics. The shear-GRF model with dynamically adjustable shear reaction elements according to the input vertical force was also implemented in the foot of a full-body skeletal model. Shear forces of the GRF were estimated from body kinematics, vertical GRF, and center of pressure. The estimated full GRF had the lowest root mean square (RMS) errors at the slow walking speed (1.0m/s) with 4.2, 1.3, and 5.7% BW for anterior-posterior, medial-lateral, and vertical forces, respectively. The estimated shear forces were not significantly different between the full-GRF and shear-GRF models, but the RMS errors of the estimated knee joint kinetics were significantly lower for the shear-GRF model. Providing COP and vertical GRF with sensors, such as an insole-type pressure mat, can help estimate shear forces of the GRF and increase accuracy for estimation of joint kinetics. Copyright © 2016 Elsevier B.V. All rights reserved.

  19. VEDA: a web-based virtual environment for dynamic atomic force microscopy.

    PubMed

    Melcher, John; Hu, Shuiqing; Raman, Arvind

    2008-06-01

    We describe here the theory and applications of virtual environment dynamic atomic force microscopy (VEDA), a suite of state-of-the-art simulation tools deployed on nanoHUB (www.nanohub.org) for the accurate simulation of tip motion in dynamic atomic force microscopy (dAFM) over organic and inorganic samples. VEDA takes advantage of nanoHUB's cyberinfrastructure to run high-fidelity dAFM tip dynamics computations on local clusters and the teragrid. Consequently, these tools are freely accessible and the dAFM simulations are run using standard web-based browsers without requiring additional software. A wide range of issues in dAFM ranging from optimal probe choice, probe stability, and tip-sample interaction forces, power dissipation, to material property extraction and scanning dynamics over hetereogeneous samples can be addressed.

  20. Invited Article: VEDA: A web-based virtual environment for dynamic atomic force microscopy

    NASA Astrophysics Data System (ADS)

    Melcher, John; Hu, Shuiqing; Raman, Arvind

    2008-06-01

    We describe here the theory and applications of virtual environment dynamic atomic force microscopy (VEDA), a suite of state-of-the-art simulation tools deployed on nanoHUB (www.nanohub.org) for the accurate simulation of tip motion in dynamic atomic force microscopy (dAFM) over organic and inorganic samples. VEDA takes advantage of nanoHUB's cyberinfrastructure to run high-fidelity dAFM tip dynamics computations on local clusters and the teragrid. Consequently, these tools are freely accessible and the dAFM simulations are run using standard web-based browsers without requiring additional software. A wide range of issues in dAFM ranging from optimal probe choice, probe stability, and tip-sample interaction forces, power dissipation, to material property extraction and scanning dynamics over hetereogeneous samples can be addressed.

  1. DREM 2.0: Improved reconstruction of dynamic regulatory networks from time-series expression data

    PubMed Central

    2012-01-01

    Background Modeling dynamic regulatory networks is a major challenge since much of the protein-DNA interaction data available is static. The Dynamic Regulatory Events Miner (DREM) uses a Hidden Markov Model-based approach to integrate this static interaction data with time series gene expression leading to models that can determine when transcription factors (TFs) activate genes and what genes they regulate. DREM has been used successfully in diverse areas of biological research. However, several issues were not addressed by the original version. Results DREM 2.0 is a comprehensive software for reconstructing dynamic regulatory networks that supports interactive graphical or batch mode. With version 2.0 a set of new features that are unique in comparison with other softwares are introduced. First, we provide static interaction data for additional species. Second, DREM 2.0 now accepts continuous binding values and we added a new method to utilize TF expression levels when searching for dynamic models. Third, we added support for discriminative motif discovery, which is particularly powerful for species with limited experimental interaction data. Finally, we improved the visualization to support the new features. Combined, these changes improve the ability of DREM 2.0 to accurately recover dynamic regulatory networks and make it much easier to use it for analyzing such networks in several species with varying degrees of interaction information. Conclusions DREM 2.0 provides a unique framework for constructing and visualizing dynamic regulatory networks. DREM 2.0 can be downloaded from: www.sb.cs.cmu.edu/drem. PMID:22897824

  2. Dynamic Force Imaging and Spectroscopy of Individual Molecules

    NASA Astrophysics Data System (ADS)

    Repp, Jascha

    2014-03-01

    In atomic force microscopy (AFM) the qPlus sensor facilitates the use of metallic tips, which are typically used in scanning tunneling microscopy (STM), and thereby facilitates combined STM and AFM experiments at cryogenic temperatures. The use of CO-functionalized tips as has been introduced recently by Gross and co-workers enabled unprecedented resolution and thereby fostered the rapid recent development of the field. We made use of the complementary information that STM and AFM can provide in different contexts. When applied to STM-based single-molecule synthesis, the combination of these techniques enables a direct quantification of the interplay of geometry and electronic coupling in metal-organic complexes in real space. Further, we combined STM on semiconductors with Kelvin probe force spectroscopy (KPFS) performed simultaneously in the same setup with the very same tip. This combination of tools allows us to experimentally recover the zero point of the energy scale usually being obscured due to so-called tip-induced band bending when measuring on surfaces of semiconductors. Finally, we used KPFS with sub-molecular resolution to image the polarity of individual bonds.

  3. Single cell active force generation under dynamic loading - Part I: AFM experiments.

    PubMed

    Weafer, P P; Reynolds, N H; Jarvis, S P; McGarry, J P

    2015-11-01

    A novel series of experiments are performed on single cells using a bespoke AFM system where the response of cells to dynamic loading at physiologically relevant frequencies is uncovered. Measured forces for the untreated cells are dramatically different to cytochalasin-D (cyto-D) treated cells, indicating that the contractile actin cytoskeleton plays a critical role in the response of cells to dynamic loading. Following a change in applied strain magnitude, while maintaining a constant applied strain rate, the compression force for contractile cells recovers to 88.9±7.8% of the steady state force. In contrast, cyto-D cell compression forces recover to only 38.0±6.7% of the steady state force. Additionally, untreated cells exhibit strongly negative (pulling) forces during unloading half-cycles when the probe is retracted. In comparison, negligible pulling forces are measured for cyto-D cells during probe retraction. The current study demonstrates that active contractile forces, generated by actin-myosin cross-bridge cycling, dominate the response of single cells to dynamic loading. Such active force generation is shown to be independent of applied strain magnitude. Passive forces generated by the applied deformation are shown to be of secondary importance, exhibiting a high dependence on applied strain magnitude, in contrast to the active forces in untreated cells. A novel series of experiments are performed on single cells using a bespoke AFM system where the response of cells to dynamic loading at physiologically relevant frequencies is uncovered. Contractile cells, which contain the active force generation machinery of the actin cytoskeleton, are shown to be insensitive to applied strain magnitude, exhibiting high resistance to dynamic compression and stretching. Such trends are not observed for cells in which the actin cytoskeleton has been chemically disrupted. These biomechanical insights have not been previously reported. This detailed characterisation of

  4. Defense at Low Force Levels: The Effect of Force to Space Ratios on Conventional Combat Dynamics

    DTIC Science & Technology

    1991-08-01

    The Atlantic Council of the United States, 1989), pp. 1-17, esp. p. I 11; United States General Accounting Office, NATO-WKM b"t Assment of the...command, or reconnais- sance vehicles we also one-half an AFVE. Field artillery and airc-raft wle accounted separaely in units of tubes and sorties...the threshold conception depicted in Figure I- lA. In effect, if we do not explicitly account for the role of changing defender force employment, then

  5. On reconstruction of dynamic permeability and tortuosity from data at distinct frequencies

    NASA Astrophysics Data System (ADS)

    Ou, Miao-Jung Yvonne

    2014-09-01

    This article focuses on the mathematical problem of reconstructing the dynamic permeability K(\\omega ) and dynamic tortuosity of poroelastic composites from permeability data at different frequencies, utilizing the analytic structure of the Stieltjes function representation of K(\\omega ) derived by Avellaneda and Tortquato (1991 Phys. Fluids A 3 2529), which is valid for all pore space geometry. The integral representation formula (IRF) for dynamic tortuosity is derived and its analytic structure exploited for reconstructing the function from a finite data set. All information of pore-space microstructure is contained in the measure of the IRF. The theory of multipoint Padé approximates for Stieltjes functions guarantees the existence of relaxation kernels that can approximate the dynamic permeability function and the dynamic tortuosity function with high accuracy. In this paper, a numerical algorithm is proposed for computing the relaxation time and the corresponding strength for each element in the relaxation kernels. In the frequency domain, this approximation can be regarded as approximating the Stieltjes function by rational functions with simple poles and positive residues. The main difference between this approach and the curve fitting approach is that the relaxation times and the strengths are computed from the partial fraction decomposition of the multipoint Padé approximates, which is the main subject of the proposed approximation scheme. With the idea from dehomogenization, we also established the exact relations between the moments of the positive measures in the IRFs of permeability and tortuosity with two important parameters in the theory of poroelasticity: the infinite-frequency tortuosity {{\\alpha }_{\\infty }} for the general case and the weighted volume-to-surface ratio Λ for the JKD model, which is regarded as a special case of the general model. From these relations, we suggest a new way for evaluating these two microstructure

  6. Integrated dynamic and static tactile sensor: focus on static force sensing

    NASA Astrophysics Data System (ADS)

    Wettels, Nicholas; Pletner, Baruch

    2012-04-01

    Object grasping by robotic hands in unstructured environments demands a sensor that is durable, compliant, and responsive to static and dynamic force conditions. In order for a tactile sensor to be useful for grasp control in these, it should have the following properties: tri-axial force sensing (two shear plus normal component), dynamic event sensing across slip frequencies, compliant surface for grip, wide dynamic range (depending on application), insensitivity to environmental conditions, ability to withstand abuse and good sensing behavior (e.g. low hysteresis, high repeatability). These features can be combined in a novel multimodal tactile sensor. This sensor combines commercial-off-the-shelf MEMS technology with two proprietary force sensors: a high bandwidth device based on PZT technology and low bandwidth device based on elastomers and optics. In this study, we focus on the latter transduction mechanism and the proposed architecture of the completed device. In this study, an embedded LED was utilized to produce a constant light source throughout a layer of silicon rubber which covered a plastic mandrel containing a set of sensitive phototransistors. Features about the contacted object such as center of pressure and force vectors can be extracted from the information in the changing patterns of light. The voltage versus force relationship obtained with this molded humanlike finger had a wide dynamic range that coincided with forces relevant for most human grip tasks.

  7. Grassland dynamics and its driving forces in western Northeast China

    NASA Astrophysics Data System (ADS)

    Chang, Liping; Yang, Jiuchun; Zhang, Shuwen; Zhang, Yangzhen

    2009-07-01

    The study area including Kerqin Pasture and the farming-pastoral ecotone of Songnen Plain, is located in the western Northeast China. It is a natural protective screen for the Northeast Plain, which is the most important one of national food bases, to ensure the food supply security and ecological security. Based on the Landsat5/TM and ETM remote sensed images of 1986, 1996 and 2000, the grassland dynamic characteristics of the above two parts of the study area, including change area, transformation, change velocity, are analyzed respectively by land use/land cover spatial change models. The results show that, the grassland area of Kerqin Pasture decreased by 3,200 km2, while that of the western Songnen Plain decreased by 4,800 km2. It was mainly due to grassland reclamation activities driven by rapid population expansion. According to the results of regional differences got by GIS technique, in Kerqin Pasture, the dynamic degree in Shuangliao county of Jilin province is the largest, up to 2.7%, while the value of Alukerqin Banner is much smaller, and the grassland is well protected. In the western Songnen Plain, the dynamic degree in Baicheng and Taonan of Jilin province is more than 4%, primarily caused by grassland reclamation as well. By contrast, the grassland in Anda city and Qinggang county of Heilongjiang province took a turn for the better with active protection and improvement measures.

  8. Vegetation and soil dynamics under climatic to anthropogenic forcing through the Holocene in Eastern France

    NASA Astrophysics Data System (ADS)

    Doyen, Elise; Vannière, Boris; Gauthier, Emilie; Bichet, Vincent; Berger, Jean-François; Arnaud, Fabien

    2010-05-01

    Small lakes with little catchment areas, and high resolution Holocene sediment infilling, offer the interest to record mainly local perturbation and to study the switch from climatic to anthropogenic forcing. Two cores were extracted from Lake Antre in the Jura Mountains (Eastern France, 798 m a.s.l) and Lake Moras located on a low-elevated plateau from the upper Rhone valley (Eastern France, 304 m a.s.l). Cores taken from the deep zone of the lakes present continuous sedimentary series from the Late-glacial (15 000 cal. BP) for Lake Moras and from the Atlantic chronozone (6000 cal. BP) for Lake Antre. Several archaeological excavations and investigations around Lakes Antre and Moras give evidence of major human occupation during Gallo-roman period, while former settlements are indicating by Pre- and Protohistoric archaeological artifacts. Multi-proxy reconstructions with high temporal resolution were undertaken: vegetation dynamics by pollen analysis, fire history by the quantification of microscopic charcoal and soil erosion by magnetic susceptibility measurements. Before the anthropogenic forcing, during the mid-Holocene environment of both lakes are constituted mainly by a dense mixed oak forest. The first palaeoecological signs of anthropogenic impact on the two sites appear to have been discontinuous and limited. They appear at the early Neolithic (ca 6000 cal .BP) for Lake Moras and during the Bronze Age (4000 to 3000 cal .BP) for Lake Antre. For the both sites, all the proxies indicate an acceleration of human impact around 3000 to 2700 cal. BP i.e. at the transition between the Bronze Age and the beginning of the Iron Age. The dense forest and the Alnus dominated vegetation on borders of lakes are affected by several clearances. The influx of micro-charcoal increases due to the use of the fire for clearing and manage settlements. The development of Poaceae and Anthropogenic Pollen Indicators (API) suggest an expansion of pastures, whereas the farming

  9. Quantitative reconstruction of thermal and dynamic characteristics of lava flow from surface thermal measurements

    NASA Astrophysics Data System (ADS)

    Korotkii, Alexander; Kovtunov, Dmitry; Ismail-Zadeh, Alik; Tsepelev, Igor; Melnik, Oleg

    2016-06-01

    We study a model of lava flow to determine its thermal and dynamic characteristics from thermal measurements of the lava at its surface. Mathematically this problem is reduced to solving an inverse boundary problem. Namely, using known conditions at one part of the model boundary we determine the missing condition at the remaining part of the boundary. We develop a numerical approach to the mathematical problem in the case of steady-state flow. Assuming that the temperature and the heat flow are prescribed at the upper surface of the model domain, we determine the flow characteristics in the entire model domain using a variational (adjoint) method. We have performed computations of model examples and showed that in the case of smooth input data the lava temperature and the flow velocity can be reconstructed with a high accuracy. As expected, a noise imposed on the smooth input data results in a less accurate solution, but still acceptable below some noise level. Also we analyse the influence of optimization methods on the solution convergence rate. The proposed method for reconstruction of physical parameters of lava flows can also be applied to other problems in geophysical fluid flows.

  10. Late Pleistocene and Holocene Beringia vegetation dynamic reconstructions based on a yedoma exposure, Itkillik (Alaska)

    NASA Astrophysics Data System (ADS)

    Lapointe Elmrabti, L.; Fortier, D.; Shur, Y.; Kanevskiy, M. Z.; Talbot, J.

    2013-12-01

    The Itkillik river area in Alaska (69°34‧ N, 150°52‧W), is part of the loosely defined region of Beringia, which was largely unglaciated during the last ice age. Beringia is known to have acted as a refugium for boreal trees and shrubs during the Pleistocene, but questions remain about the environmental history of North-Eastern Beringia, especially the extent and dynamics of the now extinct tundra-steppe biome. The 33-m-high Itkillik river exposure formed over the late Pleistocene / early Holocene (48,000 to 5,000 14C yr BP) and the exposed eolian sediments are largely undisturbed, offering a unique opportunity to examine a long term vegetation sequence in high latitude environment and link the vegetation reconstructions with the sedimentology and cryostratigraphy of the region. Because of the very low concentration of pollen in the sediments, we utilized an extraction method based on heavy-liquid (Sodium Polytungstate (SPT)) separation. Our results show a tundra-steppe vegetation type, characterized by the abundance of cyperacea and graminea taxa. Overall the pollen record of the Itkillik exposure will provide an important point of comparison to other sites localised in the circumpolar circle, especially in Siberia, as yedoma remains one of the most noticeable structures of the cold and dry periglacial environment of the Arctic and subarctic east Siberia. Implications of our findings for local climate reconstructions using pollen-climate transfer functions are discussed.

  11. Population genetic dynamics of an invasion reconstructed from the sediment egg bank.

    PubMed

    Möst, Markus; Oexle, Sarah; Marková, Silvia; Aidukaite, Dalia; Baumgartner, Livia; Stich, Hans-Bernd; Wessels, Martin; Martin-Creuzburg, Dominik; Spaak, Piet

    2015-08-01

    Biological invasions are a global issue with far-reaching consequences for single species, communities and whole ecosystems. Our understanding of modes and mechanisms of biological invasions requires knowledge of the genetic processes associated with successful invasions. In many instances, this information is particularly difficult to obtain as the initial phases of the invasion process often pass unnoticed and we rely on inferences from contemporary population genetic data. Here, we combined historic information with the genetic analysis of resting eggs to reconstruct the invasion of Daphnia pulicaria into Lower Lake Constance (LLC) in the 1970s from the resting egg bank in the sediments. We identified the invader as 'European D. pulicaria' originating from meso- and eutrophic lowland lakes and ponds in Central Europe. The founding population was characterized by extremely low genetic variation in the resting egg bank that increased considerably over time. Furthermore, strong evidence for selfing and/or biparental inbreeding was found during the initial phase of the invasion, followed by a drop of selfing rate to low levels in subsequent decades. Moreover, the increase in genetic variation was most pronounced during early stages of the invasion, suggesting additional introductions during this period. Our study highlights that genetic data covering the entire invasion process from its beginning can be crucial to accurately reconstruct the invasion history of a species. We show that propagule banks can preserve such information enabling the study of population genetic dynamics and sources of genetic variation in successful invasive populations. © 2015 John Wiley & Sons Ltd.

  12. Inpainting for videos with dynamic objects using texture and structure reconstruction

    NASA Astrophysics Data System (ADS)

    Voronin, V. V.; Marchuk, V. I.; Gapon, N. V.; Zhuravlev, A. V.; Maslennikov, S.; Stradanchenko, S.

    2015-05-01

    This paper describes a novel inpainting approach for removing marked dynamic objects from videos captured with a camera, so long as the objects occlude parts of the scene with a static background. Proposed approach allow to remove objects or restore missing or tainted regions present in a video sequence by utilizing spatial and temporal information from neighboring scenes. The algorithm iteratively performs following operations: achieve frame; update the scene model; update positions of moving objects; replace parts of the frame occupied by the objects marked for remove with use of a background model. In this paper, we extend an image inpainting algorithm based texture and structure reconstruction by incorporating an improved strategy for video. An image inpainting approach based on the construction of a composite curve for the restoration of the edges of objects in a frame using the concepts of parametric and geometric continuity is presented. It is shown that this approach allows to restore the curved edges and provide more flexibility for curve design in damaged frame by interpolating the boundaries of objects by cubic splines. After edge restoration stage, a texture reconstruction using patch-based method is carried out. We demonstrate the performance of a new approach via several examples, showing the effectiveness of our algorithm and compared with state-of-the-art video inpainting methods.

  13. The acute effects of dynamic and ballistic stretching on vertical jump height, force, and power.

    PubMed

    Jaggers, Jason R; Swank, Ann M; Frost, Karen L; Lee, Chong D

    2008-11-01

    Stretching before performance is a common practice among athletes in hopes of increasing performance and reducing the risk of injury. However, cumulative results indicate a negative impact of static stretching and proprioceptive neuromuscular facilitation (PNF) on performance; thus, there is a need for evaluating other stretching strategies for effective warm-up. The purpose of this study was to compare the differences between two sets of ballistic stretching and two sets of a dynamic stretching routine on vertical jump performance. Twenty healthy male and female college students between the ages of 22 and 34 (24.8 +/- 3 years) volunteered to participate in this study. All subjects completed three individual testing sessions on three nonconsecutive days. On each day, the subjects completed one of three treatments (no stretch, ballistic stretch, and dynamic stretch). Intraclass reliability was determined using the data obtained from each subject. A paired samples t-test revealed no significant difference in jump height, force, or power when comparing no stretch with ballistic stretch. A significant difference was found on jump power when comparing no stretch with dynamic stretch, but no significant difference was found for jump height or force. Statistics showed a very high reliability when measuring jump height, force, and power using the Kistler Quattro Jump force plate. It seems that neither dynamic stretching nor ballistic stretching will result in an increase in vertical jump height or force. However, dynamic stretching elicited gains in jump power poststretch.

  14. Image-based reconstruction of the Newtonian dynamics of solar coronal ejecta

    NASA Astrophysics Data System (ADS)

    Uritsky, Vadim

    2016-10-01

    We present a new methodology for analyzing rising and falling dynamics of unstable coronal material as represented by high-cadence SDO AIA images. The technique involves an adaptive spatiotemporal tracking of propagating intensity gradients and their characterization in terms of time-evolving areas swept out by the position vector originated from the Sun disk center. The measured values of the areal velocity and acceleration are used to obtain quantitative information on the angular momentum and acceleration along the paths of the rising and falling coronal plasma. In the absence of other forces, solar gravitation results in purely ballistic motions consistent with the Kepler’s second law; non-central forces such as the Lorentz force introduce non-zero torques resulting in more complex motions. The developed algorithms enable direct evaluation of the line-of-sight component of the net torque applied to a unit mass of the ejected coronal material which is proportional to the image-plane projection of the observed areal acceleration. The current implementation of the method cannot reliably distinguish torque modulations caused by the coronal force field from those imposed by abrupt changes of plasma mass density and nontrivial projection effects. However, it can provide valid observational constraints on the evolution of large-scale unstable magnetic topologies driving major solar-coronal eruptions as demonstrated in the related talk by B. Thompson et al.

  15. [The dynamic concision for three-dimensional reconstruction of human organ built with virtual reality modeling language (VRML)].

    PubMed

    Yu, Zhengyang; Zheng, Shusen; Chen, Huaiqing; Wang, Jianjun; Xiong, Qingwen; Jing, Wanjun; Zeng, Yu

    2006-10-01

    This research studies the process of dynamic concision and 3D reconstruction from medical body data using VRML and JavaScript language, focuses on how to realize the dynamic concision of 3D medical model built with VRML. The 2D medical digital images firstly are modified and manipulated by 2D image software. Then, based on these images, 3D mould is built with VRML and JavaScript language. After programming in JavaScript to control 3D model, the function of dynamic concision realized by Script node and sensor node in VRML. The 3D reconstruction and concision of body internal organs can be formed in high quality near to those got in traditional methods. By this way, with the function of dynamic concision, VRML browser can offer better windows of man-computer interaction in real time environment than before. 3D reconstruction and dynamic concision with VRML can be used to meet the requirement for the medical observation of 3D reconstruction and has a promising prospect in the fields of medical image.

  16. Impact of External Forcing on Glacier Dynamics at Jakobshavn Isbræ during 1840-2012

    NASA Astrophysics Data System (ADS)

    Muresan, I. S.; Khan, S. A.; Aschwanden, A.; Khroulev, C.; Bjork, A. A.; Box, J. E.

    2014-12-01

    Greenland's main outlet glaciers have more than doubled their contribution to global sea-level rise over the past decade through acceleration of ice discharge. One of the triggering mechanisms is a reduction in resistance (buttressing) at the marine based glacier front (i.e. through reduced thickness or retreat of the floating tongue of a glacier) caused by enhanced calving or a longer-term thinning due to a mass deficit of the ice sheet. Recent findings indicate the reduced buttressing at the marine terminus is responsible for the recent dynamic changes observed in Greenland, but the controlling processes and triggering mechanisms are still unclear. Furthermore, our current understanding is almost entirely based on observations from a short-term record spanning only from a year to a decade, and is characterized by short-term fluctuations and therefore not representative for longer-term trends of several decade time scales. Here, we study the mechanisms controlling dynamic changes at the terminus of Jakobshavn Isbræ over a period of 172 years. The recent glacier acceleration began in late 1990s but there is evidence for glacier retreat of comparable magnitude in 1930s, when a similarly warm period occurred. To control the acceleration and retreat based on observed front positions during 1840-2012, we use an ocean model modifier that implements forcing at the ocean boundary using melange back pressure offsets. The mean temperature anomaly in west Greenland, the North Atlantic oscillation (NAO) winter index and the Atlantic multidecadal oscillation (AMO) index anomalies for the period 1900-2012 sustain our modelling results. The modelled surface elevation changes near the front are considered and compared with observed surface elevation changes for the period 1880-2012. Furthermore, the modelled mass loss signal between 1997-2012 is validated based on ice mass change observations which we estimate using altimeter surveys from NASA's ATM flights during 1997

  17. Contralateral limb deficit after ACL-reconstruction: an analysis of early and late phase of rate of force development.

    PubMed

    Mirkov, Dragan M; Knezevic, Olivera M; Maffiuletti, Nicola A; Kadija, Marko; Nedeljkovic, Aleksandar; Jaric, Slobodan

    2017-03-01

    The aim of this study was to assess the effect of a unilateral anterior cruciate ligament reconstruction (ACLR) on maximum voluntary contraction (MVC) and explosive strength of both the involved limb and the uninvolved limb. Nineteen male athletes completed a standard isometric testing protocol 4 months post-ACLR, while 16 healthy participants served as a control group (CG). The explosive strength of the knee extensors and flexors was assessed as RFD obtained from the slope of the force-time curves over various time intervals. Both muscle groups of the involved limb had significantly lower MVC compared to the uninvolved. The involved limb also had significantly lower RFD in the late phase of contraction (140-250 ms) for both knee extensors and flexors (P < 0.05). There was no difference in MVC between the uninvolved limb and the CG. However, RFD of the uninvolved limb was lower compared to CG for both knee extensors (0-180 ms; P < 0.01) and flexors (0-150 ms; P < 0.05). ACLR leads to lower MVC and explosive strength of the involved limb. As a consequence of potential crossover (presumably neural-mediated) effects, explosive strength deficits could be bilateral, particularly in the early phase of the contraction (<100 ms).

  18. Salivary alpha-amylase activity and stress in Japan air self-defense force cargo pilots involved in Iraq reconstruction.

    PubMed

    Iizuka, Naotaka; Awano, Shuji; Ansai, Toshihiro

    2012-01-01

    This study aimed to verify whether salivary α-amylase enzyme activity (Amy) is useful as a biomarker of stress in pilots working in a stressful environment. The subjects in this study were nine Japan air self-defense force pilots who participated in Iraq reconstruction support activity in Kuwait. Amy was measured using a portable salivary amylase monitor at preflight, postflight, and on stand-by day. In addition, the state-trait anxiety inventory was administered with state scores (STAI-S) compared to Amy levels. There were greater differences in Amy levels at baseline compared to STAI-S scores between subjects on the stand-by day. Amy levels at preflight tended to increase compared to those on stand-by day as did STAI-S. The change in Amy level at postflight varied among the pilots. The Amy levels of four subjects at postflight were elevated compared to levels at preflight, while the STAI-S scores for all pilots at postflight were lower than at preflight. This study suggests that the Amy level of pilots can reflect subtle individual differences in response to the psychological and physiological stress of a flight task. Thus, monitoring Amy level may be useful for stress evaluation of pilots working in a stressful environment, providing data that might be used as an impetus for addressing stress management for this population. Copyright © 2012 Wiley Periodicals, Inc.

  19. De novo reconstruction of DNA origami structures through atomistic molecular dynamics simulation

    PubMed Central

    Maffeo, Christopher; Yoo, Jejoong; Aksimentiev, Aleksei

    2016-01-01

    The DNA origami method has brought nanometer-precision fabrication to molecular biology labs, offering myriads of potential applications in the fields of synthetic biology, medicine, molecular computation, etc. Advancing the method further requires controlling self-assembly down to the atomic scale. Here we demonstrate a computational method that allows the equilibrium structure of a large, complex DNA origami object to be determined to atomic resolution. Through direct comparison with the results of cryo-electron microscopy, we demonstrate de novo reconstruction of a 4.7 megadalton pointer structure by means of fully atomistic molecular dynamics simulations. Furthermore, we show that elastic network-guided simulations performed without solvent can yield similar accuracy at a fraction of the computational cost, making this method an attractive approach for prototyping and validation of self-assembled DNA nanostructures. PMID:26980283

  20. A Bayesian nonparametric approach to reconstruction and prediction of random dynamical systems

    NASA Astrophysics Data System (ADS)

    Merkatas, Christos; Kaloudis, Konstantinos; Hatjispyros, Spyridon J.

    2017-06-01

    We propose a Bayesian nonparametric mixture model for the reconstruction and prediction from observed time series data, of discretized stochastic dynamical systems, based on Markov Chain Monte Carlo methods. Our results can be used by researchers in physical modeling interested in a fast and accurate estimation of low dimensional stochastic models when the size of the observed time series is small and the noise process (perhaps) is non-Gaussian. The inference procedure is demonstrated specifically in the case of polynomial maps of an arbitrary degree and when a Geometric Stick Breaking mixture process prior over the space of densities, is applied to the additive errors. Our method is parsimonious compared to Bayesian nonparametric techniques based on Dirichlet process mixtures, flexible and general. Simulations based on synthetic time series are presented.

  1. Quantification of the interaction forces between metals and graphene by quantum chemical calculations and dynamic force measurements under ambient conditions.

    PubMed

    Lazar, Petr; Zhang, Shuai; Safářová, Klára; Li, Qiang; Froning, Jens Peter; Granatier, Jaroslav; Hobza, Pavel; Zbořil, Radek; Besenbacher, Flemming; Dong, Mingdong; Otyepka, Michal

    2013-02-26

    The two-dimensional material graphene has numerous potential applications in nano(opto)electronics, which inevitably involve metal graphene interfaces.Theoretical approaches have been employed to examine metal graphene interfaces, but experimental evidence is currently lacking. Here, we combine atomic force microscopy (AFM) based dynamic force measurements and density functional theory calculations to quantify the interaction between metal-coated AFM tips and graphene under ambient conditions. The results show that copper has the strongest affinity to graphene among the studied metals (Cu, Ag, Au, Pt, Si), which has important implications for the construction of a new generation of electronic devices. Observed differences in the nature of the metal-graphene bonding are well reproduced by the calculations, which included nonlocal Hartree-Fock exchange and van der Waals effects.

  2. 3D Reconstruction of Human Laryngeal Dynamics Based on Endoscopic High-Speed Recordings.

    PubMed

    Semmler, Marion; Kniesburges, Stefan; Birk, Veronika; Ziethe, Anke; Patel, Rita; Dollinger, Michael

    2016-07-01

    Standard laryngoscopic imaging techniques provide only limited two-dimensional insights into the vocal fold vibrations not taking the vertical component into account. However, previous experiments have shown a significant vertical component in the vibration of the vocal folds. We present a 3D reconstruction of the entire superior vocal fold surface from 2D high-speed videoendoscopy via stereo triangulation. In a typical camera-laser set-up the structured laser light pattern is projected on the vocal folds and captured at 4000 fps. The measuring device is suitable for in vivo application since the external dimensions of the miniaturized set-up barely exceed the size of a standard rigid laryngoscope. We provide a conservative estimate on the resulting resolution based on the hardware components and point out the possibilities and limitations of the miniaturized camera-laser set-up. In addition to the 3D vocal fold surface, we extended previous approaches with a G2-continuous model of the vocal fold edge. The clinical applicability was successfully established by the reconstruction of visual data acquired from 2D in vivo high-speed recordings of a female and a male subject. We present extracted dynamic parameters like maximum amplitude and velocity in the vertical direction. The additional vertical component reveals deeper insights into the vibratory dynamics of the vocal folds by means of a non-invasive method. The successful miniaturization allows for in vivo application giving access to the most realistic model available and hence enables a comprehensive understanding of the human phonation process.

  3. Real-time 4D dose reconstruction for tracked dynamic MLC deliveries for lung SBRT.

    PubMed

    Kamerling, Cornelis Ph; Fast, Martin F; Ziegenhein, Peter; Menten, Martin J; Nill, Simeon; Oelfke, Uwe

    2016-11-01

    deliveries resulted in the following OAR dose reductions: lung V20 up to 3.5%, spinal cord D2 up to 0.9 Gy/Fx, and proximal airways D2 up to 1.4 Gy/Fx. The authors could show that for patient data at clinical resolution and realistic motion conditions, the delivered dose could be reconstructed in 4D for the whole lung volume in real-time. The dose distributions show that reduced margins yield lower doses to healthy tissue, whilst target dose can be maintained using dynamic MLC tracking.

  4. Bohmian dynamics on subspaces using linearized quantum force.

    PubMed

    Rassolov, Vitaly A; Garashchuk, Sophya

    2004-04-15

    In the de Broglie-Bohm formulation of quantum mechanics the time-dependent Schrodinger equation is solved in terms of quantum trajectories evolving under the influence of quantum and classical potentials. For a practical implementation that scales favorably with system size and is accurate for semiclassical systems, we use approximate quantum potentials. Recently, we have shown that optimization of the nonclassical component of the momentum operator in terms of fitting functions leads to the energy-conserving approximate quantum potential. In particular, linear fitting functions give the exact time evolution of a Gaussian wave packet in a locally quadratic potential and can describe the dominant quantum-mechanical effects in the semiclassical scattering problems of nuclear dynamics. In this paper we formulate the Bohmian dynamics on subspaces and define the energy-conserving approximate quantum potential in terms of optimized nonclassical momentum, extended to include the domain boundary functions. This generalization allows a better description of the non-Gaussian wave packets and general potentials in terms of simple fitting functions. The optimization is performed independently for each domain and each dimension. For linear fitting functions optimal parameters are expressed in terms of the first and second moments of the trajectory distribution. Examples are given for one-dimensional anharmonic systems and for the collinear hydrogen exchange reaction.

  5. Reciprocity-based experimental determination of dynamic forces and moments: A feasibility study

    NASA Technical Reports Server (NTRS)

    Ver, Istvan L.; Howe, Michael S.

    1994-01-01

    BBN Systems and Technologies has been tasked by the Georgia Tech Research Center to carry Task Assignment No. 7 for the NASA Langley Research Center to explore the feasibility of 'In-Situ Experimental Evaluation of the Source Strength of Complex Vibration Sources Utilizing Reciprocity.' The task was carried out under NASA Contract No. NAS1-19061. In flight it is not feasible to connect the vibration sources to their mounting points on the fuselage through force gauges to measure dynamic forces and moments directly. However, it is possible to measure the interior sound field or vibration response caused by these structureborne sound sources at many locations and invoke principle of reciprocity to predict the dynamic forces and moments. The work carried out in the framework of Task 7 was directed to explore the feasibility of reciprocity-based measurements of vibration forces and moments.

  6. UMER: An analog computer for dynamics of swarms interacting via long-range forces

    NASA Astrophysics Data System (ADS)

    Kishek, R. A.; Bai, G.; Bernal, S.; Feldman, D.; Godlove, T. F.; Haber, I.; O'Shea, P. G.; Quinn, B.; Papadopoulos, C.; Reiser, M.; Stratakis, D.; Tian, K.; Tobin, C. J.; Walter, M.

    2006-06-01

    Some of the most challenging and interesting problems in nature involve large numbers of objects or particles mutually interacting through long-range forces. Examples range from galaxies and plasmas to flocks of birds and traffic flow on a highway. Even in cases where the form of the interacting force is precisely known, such as the 1/ r2-dependent Coulomb and gravitational forces, such problems present a formidable theoretical and modeling challenge for large numbers of interacting bodies. This paper reports on a newly constructed, scaled particle accelerator that will serve as an experimental testbed for the dynamics of swarms interacting through long-range forces. Primarily designed for intense beam dynamics studies for advanced accelerators, the University of Maryland Electron Ring (UMER) design is described in detail and an update on commissioning is provided. An example application to a system other than a charged particle beam is discussed.

  7. High-speed force spectroscopy unfolds titin at the velocity of molecular dynamics simulations.

    PubMed

    Rico, Felix; Gonzalez, Laura; Casuso, Ignacio; Puig-Vidal, Manel; Scheuring, Simon

    2013-11-08

    The mechanical unfolding of the muscle protein titin by atomic force microscopy was a landmark in our understanding of single-biomolecule mechanics. Molecular dynamics simulations offered atomic-level descriptions of the forced unfolding. However, experiment and simulation could not be directly compared because they differed in pulling velocity by orders of magnitude. We have developed high-speed force spectroscopy to unfold titin at velocities reached by simulation (~4 millimeters per second). We found that a small β-strand pair of an immunoglobulin domain dynamically unfolds and refolds, buffering pulling forces up to ~100 piconewtons. The distance to the unfolding transition barrier is larger than previously estimated but is in better agreement with atomistic predictions. The ability to directly compare experiment and simulation is likely to be important in studies of biomechanical processes.

  8. Recording the dynamic endocytosis of single gold nanoparticles by AFM-based force tracing

    NASA Astrophysics Data System (ADS)

    Ding, Bohua; Tian, Yongmei; Pan, Yangang; Shan, Yuping; Cai, Mingjun; Xu, Haijiao; Sun, Yingchun; Wang, Hongda

    2015-04-01

    We utilized force tracing to directly record the endocytosis of single gold nanoparticles (Au NPs) with different sizes, revealing the size-dependent endocytosis dynamics and the crucial role of membrane cholesterol. The force, duration and velocity of Au NP invagination are accurately determined at the single-particle and microsecond level unprecedentedly.We utilized force tracing to directly record the endocytosis of single gold nanoparticles (Au NPs) with different sizes, revealing the size-dependent endocytosis dynamics and the crucial role of membrane cholesterol. The force, duration and velocity of Au NP invagination are accurately determined at the single-particle and microsecond level unprecedentedly. Electronic supplementary information (ESI) available: Details of the experimental procedures and the results of the control experiments. See DOI: 10.1039/c5nr01020a

  9. Dynamic Analysis With Stress Mode Animation by the Integrated Force Method

    NASA Technical Reports Server (NTRS)

    Patnaik, Surya N.; Coroneos, Rula M.; Hopkins, Dale A.

    1997-01-01

    Dynamic animation of stresses and displacements, which complement each other, can be a useful tool in the analysis and design of structural components. At the present time only displacement-mode animation is available through the popular stiffness formulation. This paper attempts to complete this valuable visualization tool by augmenting the existing art with stress mode animation. The reformulated method of forces, which in the literature is known as the integrated force method (IFM), became the analyzer of choice for the development of stress mode animation because stresses are the primary unknowns of its dynamic analysis. Animation of stresses and displacements, which have been developed successfully through the IFM analyzers, is illustrated in several examples along with a brief introduction to IFM dynamic analysis. The usefulness of animation in design optimization is illustrated considering the spacer structure component of the International Space Station as an example. An overview of the integrated force method analysis code (IFM/ANALYZERS) is provided in the appendix.

  10. Improving synthesis and analysis prior blind compressed sensing with low-rank constraints for dynamic MRI reconstruction.

    PubMed

    Majumdar, Angshul

    2015-01-01

    In blind compressed sensing (BCS), both the sparsifying dictionary and the sparse coefficients are estimated simultaneously during signal recovery. A recent study adopted the BCS framework for recovering dynamic MRI sequences from under-sampled K-space measurements; the results were promising. Previous works in dynamic MRI reconstruction showed that, recovery accuracy can be improved by incorporating low-rank penalties into the standard compressed sensing (CS) optimization framework. Our work is motivated by these studies, and we improve upon the basic BCS framework by incorporating low-rank penalties into the optimization problem. The resulting optimization problem has not been solved before; hence we derive a Split Bregman type technique to solve the same. Experiments were carried out on real dynamic contrast enhanced MRI sequences. Results show that, with our proposed improvement, the reconstruction accuracy is better than BCS and other state-of-the-art dynamic MRI recovery algorithms. Copyright © 2014 Elsevier Inc. All rights reserved.

  11. Conformational dynamics of two natively unfolded fragment peptides: Comparison of the AMBER and CHARMM force fields

    PubMed Central

    Chen, Wei; Shi, Chuanyin; MacKerell, Alexander D.; Shen, Jana

    2015-01-01

    Physics-based force fields are the backbone of molecular dynamics simulations. In recent years, significant progress has been made in the assessment and improvement of commonly-used force fields for describing conformational dynamics of folded proteins. However, the accuracy for the unfolded states remains unclear. The latter is however important for detailed studies of protein folding pathways, conformational transitions involving unfolded states and dynamics of intrinsically disordered proteins. In this work we compare the three commonly-used force fields, AMBER ff99SB-ILDN, CHARMM22/CMAP and CHARMM36, for modeling the natively unfolded fragment peptides, NTL9(1-22) and NTL9(6-17), using explicit-solvent replica-exchange molecular dynamics simulations. All three simulations show that NTL9(6-17) is completely unstructured, while NTL9(1-22) transiently samples various β-hairpin states, reminiscent of the first β-hairpin in the structure of the intact NT9 protein. The radius of gyration of the two peptides is force field independent but likely underestimated due to the current deficiency of additive force fields. Compared to the CHARMM force fields, ff99SB-ILDN gives slightly higher β-sheet propensity and more native-like residual structures for NTL9(1-22), which may be attributed to its known β preference. Surprisingly, only two sequence-local pairs of charged residues make appreciable ionic contacts in the simulations of NTL9(1-22), which are sampled slightly more by the CHARMM force fields. Taken together, these data suggest that the current CHARMM and AMBER force fields are globally in agreement in modeling the unfolded states corresponding to β-sheet in the folded structure, while differing in details such as the native-likeness of the residual structures and interactions. PMID:26020564

  12. A device for testing the dynamic performance of in situ force plates.

    PubMed

    East, Rebecca H; Noble, Jonathan J; Arscott, Richard A; Shortland, Adam P

    2017-09-01

    Force plates are often incorporated into motion capture systems for the calculation of joint kinetic variables and other data. This project aimed to create a system that could be used to check the dynamic performance of force plate in situ. The proposed solution involved the design and development of an eccentrically loaded wheel mounted on a weighted frame. The frame was designed to hold a wheel mounted in two orthogonal positions. The wheel was placed on the force plate and spun. A VICON™ motion analysis system captured the positional data of the markers placed around the rim of the wheel which was used to create a simulated force profile, and the force profile was dependent on spin speed. The root mean square error between the simulated force profile and the force plate measurement was calculated. For nine trials conducted, the root mean square error between the two simultaneous measures of force was calculated. The difference between the force profiles in the x- and y-directions is approximately 2%. The difference in the z-direction was under 0.5%. The eccentrically loaded wheel produced a predictable centripetal force in the plane of the wheel which varied in direction as the wheel was spun and magnitude dependent on the spin speed. There are three important advantages to the eccentrically loaded wheel: (1) it does not rely on force measurements made from other devices, (2) the tests require only 15 min to complete per force plate and (3) the forces exerted on the plate are similar to those of paediatric gait.

  13. GravitoMagnetic force in modified Newtonian dynamics

    SciTech Connect

    Exirifard, Qasem

    2013-08-01

    We introduce the Gauge Vector-Tensor (GVT) theory by extending the AQUAL's approach to the GravitoElectroMagnetism (GEM) approximation of gravity. GVT is a generally covariant theory of gravity composed of a pseudo Riemannian metric and two U(1) gauge connections that reproduces MOND in the limit of very weak gravitational fields while remains consistent with the Einstein-Hilbert gravity in the limit of strong and Newtonian gravitational fields. GVT also provides a simple framework to study the GEM approximation to gravity. We illustrate that the gravitomagnetic force at the edge of a galaxy can be in accord with either GVT or ΛCDM but not both. We also study the physics of the GVT theory around the gravitational saddle point of the Sun and Jupiter system. We notice that the conclusive refusal of the GVT theory demands measuring either both of the gravitoelectric and gravitomagnetic fields inside the Sun-Jupiter MOND window, or the gravitoelectric field inside two different solar GVT MOND windows. The GVT theory, however, will be favored by observing an anomaly in the gravitoelectric field inside a single MOND window.

  14. Numerical, analytical, experimental study of fluid dynamic forces in seals

    NASA Technical Reports Server (NTRS)

    Shapiro, William; Artiles, Antonio; Aggarwal, Bharat; Walowit, Jed; Athavale, Mahesh M.; Preskwas, Andrzej J.

    1992-01-01

    NASA/Lewis Research Center is sponsoring a program for providing computer codes for analyzing and designing turbomachinery seals for future aerospace and engine systems. The program is made up of three principal components: (1) the development of advanced three dimensional (3-D) computational fluid dynamics codes, (2) the production of simpler two dimensional (2-D) industrial codes, and (3) the development of a knowledge based system (KBS) that contains an expert system to assist in seal selection and design. The first task has been to concentrate on cylindrical geometries with straight, tapered, and stepped bores. Improvements have been made by adoption of a colocated grid formulation, incorporation of higher order, time accurate schemes for transient analysis and high order discretization schemes for spatial derivatives. This report describes the mathematical formulations and presents a variety of 2-D results, including labyrinth and brush seal flows. Extensions of 3-D are presently in progress.

  15. Reconstruction of the Dynamics of Mammoth Tundra-Steppe Ecosystem Productivity

    NASA Astrophysics Data System (ADS)

    Zimov, S. A.; Chapin, F. S.

    2001-12-01

    During periods of glaciation, the mammoth tundra-steppe (MTS) ecosystem was the largest biome.The productivity of this ecosystem is under discussion. During the Pleistocene, a thick layer of frozen loess accumulated on the lowlands of northern Siberia. As loess deposited on the surface, the bottom of the soil profile was incorporated into permafrost. Present-day frozen loess soils of Siberia are cryo-preserved soils of the MTS. These soils have little humus but contain large quantities of grass roots and live Pleistocene microorganisms. As the soil melts, they start to respire actively. Analysis of vertical distribution of respiration in different types of modern soil and permafrost showed that respiration potential of cryo-preserved soil is similar to respiration of low soil horizons. On the basis of the correlation of photosynthesis to respiration, we calculated productivity of the MTS ecosystem and reconstructed its dynamics. Dynamics of MTS productivity was evaluated through the dynamics of the relative quantities of herbivorous animals. We analyzed the distribution of about 600 14C dates of mammoths, bison, and rhinoceroses. An estimate of the absolute density of mammoths in the north of Siberia was calculated on the basis of data collected on the density of skeletons buried in the permafrost. Our investigations showed that vegetation productivity and density of herbivorous animals in the MTS ecosystem varied within a wide range depending on climate. Dynamics of these parameters correlate with data of temperature and atmospheric CH4 obtained from Greenland cores. During periods of climate warming the quantity of mammoths in the north of Siberia was comparable to the quantity of elephants in present-day undisturbed African savanna.

  16. WE-G-18C-08: Real Time Tumor Imaging Using a Novel Dynamic Keyhole MRI Reconstruction Technique

    SciTech Connect

    Lee, D; Pollock, S; Whelan, B; Keall, P; Greer, P; Kim, T

    2014-06-15

    Purpose: To test the hypothesis that the novel Dynamic Keyhole MRI reconstruction technique can accelerate image acquisition whilst maintaining high image quality for lung cancer patients. Methods: 18 MRI datasets from 5 lung cancer patients were acquired using a 3T MRI scanner. These datasets were retrospectively reconstructed using (A) The novel Dynamic Keyhole technique, (B) The conventional keyhole technique and (C) the conventional zero filling technique. The dynamic keyhole technique in MRI refers to techniques in which previously acquired k-space data is used to supplement under sampled data obtained in real time. The novel Dynamic Keyhole technique utilizes a previously acquired a library of kspace datasets in conjunction with central k-space datasets acquired in realtime. A simultaneously acquired respiratory signal is utilized to sort, match and combine the two k-space streams with respect to respiratory displacement. Reconstruction performance was quantified by (1) comparing the keyhole size (which corresponds to imaging speed) required to achieve the same image quality, and (2) maintaining a constant keyhole size across the three reconstruction methods to compare the resulting image quality to the ground truth image. Results: (1) The dynamic keyhole method required a mean keyhole size which was 48% smaller than the conventional keyhole technique and 60% smaller than the zero filling technique to achieve the same image quality. This directly corresponds to faster imaging. (2) When a constant keyhole size was utilized, the Dynamic Keyhole technique resulted in the smallest difference of the tumor region compared to the ground truth. Conclusion: The dynamic keyhole is a simple and adaptable technique for clinical applications requiring real-time imaging and tumor monitoring such as MRI guided radiotherapy. Based on the results from this study, the dynamic keyhole method could increase the imaging frequency by a factor of five compared with full k

  17. Haptic perception of force magnitude and its relation to postural arm dynamics in 3D.