Science.gov

Sample records for red oak revealed

  1. Sporulation capacity of Phytophthora ramorum on northern red oak and chestnut oak

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Branches from six 2 to 3-year old northern red and chestnut oak seedlings were dip-inoculated with ca. 5,000 sporangia per milliliter of Phytophthora ramorum isolate Pr-6 and incubated at 100 percent relative humidity in dew chambers for 6 days. Three plants were then used to assess sporangia produ...

  2. Infectivity and sporulation of Phytophthora ramorum on northern red oak and chestnut oak

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Branches from northern red and chestnut oak seedlings were dip-inoculated with 5,000 sporangia per milliliter of Phytophthora ramorum and incubated at 100 percent relative humidity in dew chambers for 6 days. Three plants were then used to assess sporangia production, while the other three plants w...

  3. Evaluation of spectral light management on growth of container-grown willow oak, nuttall oak and summer red maple

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Plant response to blue, red, gray or black shade cloth was evaluated with willow oak (Quercus phellos L.), Nuttall oak (Quercus nuttallii Palmer, Nuttall) and Summer Red maple (Acer rubrum L. ‘Summer Red’) liners. Light transmitted through the colored shade cloth had no influence on germination of ...

  4. Pollen morphology and plant taxonomy of red oaks in eastern North America

    SciTech Connect

    Solomon, A.M.

    1983-04-01

    Identification of Quercus (oak) pollen taxa could enhance Quaternary palynological interpretations from eastern North America. A first step is to determine a morphological and taxonomic basis for such identifications. Scanning electron microscopy was utilized to examine exine-surface features of 266 specimens representing 21 red oak (subgen. Erythrobalanus) species from eastern North America, and two intermediate oak (subgen. Protobalanus) species from the desert southwest. Twenty pollen morphological characteristics defined previously were tabulated for each of 324 pollen grains. The data were subjected to cluster analyses. Cluster diagrams were compared with traditional oak systematics. Pollen morphology and plant taxonomy compared poorly with respect to series and species relationships among the red oaks, apparently due as much to high intraspecific and low interspecific variability in pollen-morphological characters as to the uncertain taxonomy of red oaks. Pollen morphology, however, does support the hypothesis of subgeneric oak evolution from intermediate oaks to the series Virentes of white oaks, and from more advanced white oaks to the red oak species. 19 references, 25 figures, 1 table.

  5. A preliminary study about the influence of high hydrostatic pressure processing in parallel with oak chip maceration on the physicochemical and sensory properties of a young red wine.

    PubMed

    Tao, Yang; Sun, Da-Wen; Górecki, Adrian; Błaszczak, Wioletta; Lamparski, Grzegorz; Amarowicz, Ryszard; Fornal, Józef; Jeliński, Tomasz

    2016-03-01

    The influence of high hydrostatic pressure (HHP) processing in parallel with oak chip maceration on the physicochemical and sensory properties of a young red wine was investigated preliminarily. Wines were treated by HHP at 250, 450 and 650MPa for up to 45min and French oak chips (5g/L) were added. HHP enhanced the extraction of phenolics from oak chips. The phenolic contents and antioxidant activity of the wine increased after HHP processing in the presence of oak chips. Meanwhile, the anthocyanin content and wine color intensity decreased in the first 5min of pressure treatment and then increased gradually. The multivariate analysis revealed that "pressure holding time" was the key factor affecting wine physicochemical characteristics during HHP processing in the presence of oak chips. Furthermore, oak chip maceration with and without HHP processing weakened the intensities of several sensory attributes and provided the wine with an artificial taste.

  6. A preliminary study about the influence of high hydrostatic pressure processing in parallel with oak chip maceration on the physicochemical and sensory properties of a young red wine.

    PubMed

    Tao, Yang; Sun, Da-Wen; Górecki, Adrian; Błaszczak, Wioletta; Lamparski, Grzegorz; Amarowicz, Ryszard; Fornal, Józef; Jeliński, Tomasz

    2016-03-01

    The influence of high hydrostatic pressure (HHP) processing in parallel with oak chip maceration on the physicochemical and sensory properties of a young red wine was investigated preliminarily. Wines were treated by HHP at 250, 450 and 650MPa for up to 45min and French oak chips (5g/L) were added. HHP enhanced the extraction of phenolics from oak chips. The phenolic contents and antioxidant activity of the wine increased after HHP processing in the presence of oak chips. Meanwhile, the anthocyanin content and wine color intensity decreased in the first 5min of pressure treatment and then increased gradually. The multivariate analysis revealed that "pressure holding time" was the key factor affecting wine physicochemical characteristics during HHP processing in the presence of oak chips. Furthermore, oak chip maceration with and without HHP processing weakened the intensities of several sensory attributes and provided the wine with an artificial taste. PMID:26471591

  7. Seasonal variation in the structure of red reflectance of leaves from yellow poplar, red oak, and red maple

    NASA Technical Reports Server (NTRS)

    Brakke, Thomas W.; Wergin, William P.; Erbe, Eric F.; Harnden, Joann M.

    1993-01-01

    The light scattered from leaves was measured as a function of view angle in the principal plane for yellow poplar, red oak, and red maple. The source was a parallel-polarized helium-neon laser. Yellow poplar leaves had the highest reflectance of the three species, which may have been due to its shorter palisade cells and more extensive spongy mesophyll. Prior to senescence, there was a significant decrease, but not total extinction, in the reflectance of the beam incident at 60 deg from nadir on the adaxial side of the leaves of all three species. Low-temperature SEM observations showed differences in the surface wax patterns among the three species but did not indicate a cause of the reflectance changes other than possibly the accumulation and aging of the wax.

  8. Development of red oak seedlings using plastic shelters on hardwood sites in West Virginia. Forest Service research paper (Final)

    SciTech Connect

    Smith, H.C.

    1993-04-01

    Plastic shelters were used to grow red oak seedlings on good-to-excellent Appalachian hardwood growing sites in north central West Virginia. Preliminary results indicate that shelters have the potential to stimulate development of red oak seedlingheight growth, especially if height growth continues once the seedling tops are above the 5-foot-tall shelters.

  9. KINETICS OF LEAF TEMPERATURE FLUCTUATION AFFECT ISOPRENE EMISSION FROM RED OAK (QUERCUS RUBRA) LEAVES

    EPA Science Inventory

    Because the rate of isoprene (2-methyl-1,3-butadiene) emission from plants is highly temperature-dependent, we investigated the natural fluctuations on leaf temperature and the effects of rapid temperature change on isoprene emission of red oak (Quercus rubra L.) leaves at the to...

  10. Phenology, dichogamy, and floral synchronization in a northern red oak (Quercus Rubra L.) seed orchard

    Technology Transfer Automated Retrieval System (TEKTRAN)

    We developed a novel scoring system to assess spring phenology in a northern red oak clonal seed orchard. The system was used to score between 304 and 364 ramets for three reproductive seasons and place clones into early, middle, and late phenology groups. While the absolute number of clones in ea...

  11. Survival of northern red oak acorns after fall burning. Forest Service research paper (Final)

    SciTech Connect

    Auchmoody, L.R.; Smith, H.C.

    1993-01-01

    The survival of recently fallen northern red oak acorns after exposure to a cool fall burn was evaluated in northwestern Pennsylvania. Although no acorns were consumed by the fire, some were charred. Between 40 and 49 percent of the acorns in the litter were destroyed. The fire was not hot enough to kill Curculio larvae within the acorns. Burned acorns infested with Curculio that survived the fire had 20 percent lower germination rates than unburned acorns.

  12. Underplanting northern red oak in Missouri without herbicides. Forest Service general technical report

    SciTech Connect

    Johnson, P.S.

    1992-01-01

    The report describes a provisional assessment of the effectiveness of applying herbicides to woody competitors between 0.5- and 1.5-inches d.b.h. before underplanting northern red oak. Results suggest that no weed control, i.e., not using herbicides, would require only modest increases in the numbers or initial size of nursery stock needed to obtain a given future stocking goal.

  13. Computation of drying stresses in red oak using equilibrium and non-equilibrium creep models

    SciTech Connect

    Park, J.H.; Kyanka, G.H.; Smith, W.B.

    1995-12-31

    A comprehensive model which shows the development of drying stresses in red oak is presented. The elastic, visco-elastic and mechano-sorptive mechanisms of strain behavior are all included. The results show the dominant effects of mechano-sorptive creep on stress relaxation and give insights on the effects of temperature on stress. Some of the results indicate that model has value for people who are involved with commerical drying systems.

  14. Propiconazole distribution and effects on Ceratocystis fagacearum survival in roots of treated red oaks.

    PubMed

    Blaedow, Ryan A; Juzwik, Jennifer; Barber, Brian

    2010-10-01

    We investigated the interaction between the oak wilt pathogen (Ceratocystis fagacearum) and propiconazole in lower stems and roots of Quercus rubra to better understand published reports of fungicide failure after 2 years. Propiconazole was infused into mature oaks in July 2004 and roots were inoculated with pathogen endoconidia 1.0 m from injection sites at ±2 weeks of fungicide treatment. Pathogen presence in wood samples was determined by isolation and fungicide concentrations measured using gas chromatography-mass spectrometry. Propiconazole was detected in the roots (≤1.0 m from injection sites) of all treated trees at 2, 12, and 24 months. Propiconazole was detected in all samples (n=68) at 2 and 12 months and in 93% of samples (n=72) at 24 months with concentrations ranging from 815 ppm (12 months in lower stem) to 0.7 ppm (24 months in most distal root segment). Although pathogen isolation incidence was lower in treated than disease control trees at 2 and 12 months, at no time did an infused oak fail to yield the fungus upon isolation. The results document basipetal movement and degradation of propiconazole, as well as the survival of the pathogen, over time in roots and lower stems of infused red oaks.

  15. Gypsy moth (Lepidoptera: Lymantriidae) consumption and utilization of northern red oak and white oak foliage exposed to simulated acid rain and ozone

    SciTech Connect

    Cannon, W.N. Jr. )

    1993-06-01

    Two-year-old seedlings of white oak, Quercus alba L., and red oak, Q. rubra L., were exposed to ozone (O[sub 3]) fumigations in four continuously stirred tank reactor chambers in the greenhouse for 8 h/d, 3 d/wk for 6 wk. Fumigation treatments were charcoal-filtered air (CFA) and CFA + 0.15 ppm O[sub 3]. Two simulated rain treatments, pH 4.2 and pH 3.0, of-1.25 cm were applied once each week in rain-simulation chambers. Gypsy moth, Lymantria dispar (L.), third instars were allowed to feed on leaf disks from treated seedlings for 24 h. Leaf area consumed, food assimilated, weight gain, and relative growth rate (RGR) were examined. Overall, larvae fed white oak foliage consumed more foliage and gained more weight than those fed red oak foliage. Response to the fumigation and rain treatments was different for each oak species. On white oak foliage, larvae consumed significantly less foliage treated with CFA + pH 3.0 rain, but the lowest RGR occurred with the 0.15 ppm O[sub 3] + pH 4.2 rain treatment. The most food assimilated, greatest weight gain, and highest RGR occurred with the CFA + pH 4.2 rain control. Red oak foliage consumed was equivalent for all treatments, but foliage exposed to CFA + pH 3.0 rain resulted in more food assimilated, greater weight gain, and higher RGR for that species.

  16. Planting northern red oak acorns: Is size and planting depth important. Forest Service research paper (Final)

    SciTech Connect

    Auchmoody, L.R.; Smith, H.C.; Walters, R.S.

    1994-10-27

    A study was conducted in northern Pennsylvania to determine whether predation by small mammals and insects is related to the size of red oak acorns. Three sizes of acorns were used along with two planting techniques and three levels of overstory shading. Three-year results indicated that acorn size is not a factor in mammal and insect predation. Acorn size did not affect 3-year survival. Although 3-year total height growth was statistically different after 3 years, the differences were too small for practical use.

  17. Hydraulic conductivity of red oak (Quercus rubra L.) leaf tissue does not respond to light.

    PubMed

    Rockwell, F E; Holbrook, N M; Zwieniecki, M A

    2011-04-01

    The permeability of leaf tissue to water has been reported to increase under illumination, a response reputed to involve aquaporins. We studied this 'light response' in red oak (Quercus rubra L.), the species in which the phenomenon was first detected during measurements of leaf hydraulic conductance with the high-pressure flow meter (HPFM). In our HPFM measurements, we found that pre-conditioning leaves in darkness was not sufficient to bring them to their minimum conductance, which was attained only after an hour of submersion and pressurization. However, pre-conditioning leaves under anoxic conditions resulted in an immediate reduction in conductance. Leaves light- and dark-acclimated while on the tree showed no differences in the time course of HPFM measurement under illumination. We also studied the effect of light level and anoxia on rehydration kinetics, finding that anoxia slowed rehydration, but light had no effect either in the lab (rehydration under low light, high humidity) or on the tree (acclimation under high light, 10 min of dark prior to rehydration). We conclude that the declines in conductance observed in the HPFM must involve a resistance downstream of the extracellular air space, and that in red oak the hydraulic conductivity of leaf tissue is insensitive to light. PMID:21309791

  18. Volatile compounds in a spanish red wine aged in barrels made of Spanish, French, and American oak wood.

    PubMed

    De Simón, Brígida Fernández; Cadahía, Estrella; Jalocha, Jerzy

    2003-12-17

    A red Rioja wine was aged in barrels made of Spanish oak wood (Quercus robur, Quercus petraea,Quercus pyrenaica, and Quercus faginea) during 21 months. The concentrations of some volatile compounds [syringaldehyde, vanillin, eugenol, maltol, guaiacol, 4-ethylphenol, cis and trans isomers of beta-methyl-gamma-octalactone, 2-furfuraldehyde, 5-methyl-2-furfuraldehyde, 5-(hydroxymethyl)-2-furfuraldehyde, and furfuryl alcohol] were studied in these wines and compared with those of the same wine aged in barrels made from French oak of Q. robur (Limousin, France) and Q. petraea (Allier, France) and American oak of Quercus alba (Missouri). Similar concentrations of these compounds were found in wines aged in Spanish and French oak wood barrels, and significantly different concentrations were found with respect to wines aged in barrels made of American oak wood, indicating a different behavior. Thus, wines with different characteristics were obtained, depending on the kind of wood. Also, the kind of wood had an important influence on sensory characteristics of wine during the aging process. Spanish oak wood from Q. robur, Q. petraea, and Q. pyrenaica can be considered to be suitable for barrel production for quality wines, because a wine aged in barrels made of these Spanish oak woods showed similar and intermediate characteristics to those of the same wine aged in French and American oak woods usually used in cooperage.

  19. A comparative study of physiological and morphological seedling traits associated with shade tolerance in introduced red oak (Quercus rubra) and native hardwood tree species in southwestern Germany.

    PubMed

    Kuehne, Christian; Nosko, Peter; Horwath, Tobias; Bauhus, Jürgen

    2014-02-01

    Northern red oak (Quercus rubra L.), a moderately shade-tolerant tree species, is failing to regenerate throughout its native North American range, while successful recruitment in Central Europe has been observed since its introduction. To examine whether comparative photosynthetic performance could explain the regeneration success of this non-native species in Central Europe, we compared the physiological and morphological seedling traits of red oak with three co-occurring tree species under three canopy types in southwestern Germany. Native species included a moderately shade-tolerant native oak (Quercus robur L.) and two shade-tolerant species (Acer pseudoplatanus L. and Carpinus betulus L.). The photosynthetic traits of non-native red oak seedlings were similar to those reported for this species in the native range, where shade-tolerant competitors readily outperform red oak under low light conditions. However, compared with native shade-tolerant species in Europe, red oak seedlings photosynthesized efficiently, especially under closed canopies and in small canopy gaps, exhibiting high photosynthetic capacity, low leaf dark respiration and leaf-level light compensation points that were similar to the more shade-tolerant species. The superior net carbon gain of red oak seedlings at low and moderate light levels was likely facilitated by high leaf areas and reflected by seedling dry masses that were greater than the observed native European species. A competitive advantage for red oak was not evident because relative height growth was inferior to seedlings of co-occurring species. In North America, the inability of seedlings to compete with shade-tolerant tree species in deeply shaded understories is central to the problem of poor oak recruitment. Our study suggests that the ability of non-native red oak to perform equally well to native shade-tolerant species under a variety of light conditions could contribute to the consistent success of red oak regeneration

  20. A comparative study of physiological and morphological seedling traits associated with shade tolerance in introduced red oak (Quercus rubra) and native hardwood tree species in southwestern Germany.

    PubMed

    Kuehne, Christian; Nosko, Peter; Horwath, Tobias; Bauhus, Jürgen

    2014-02-01

    Northern red oak (Quercus rubra L.), a moderately shade-tolerant tree species, is failing to regenerate throughout its native North American range, while successful recruitment in Central Europe has been observed since its introduction. To examine whether comparative photosynthetic performance could explain the regeneration success of this non-native species in Central Europe, we compared the physiological and morphological seedling traits of red oak with three co-occurring tree species under three canopy types in southwestern Germany. Native species included a moderately shade-tolerant native oak (Quercus robur L.) and two shade-tolerant species (Acer pseudoplatanus L. and Carpinus betulus L.). The photosynthetic traits of non-native red oak seedlings were similar to those reported for this species in the native range, where shade-tolerant competitors readily outperform red oak under low light conditions. However, compared with native shade-tolerant species in Europe, red oak seedlings photosynthesized efficiently, especially under closed canopies and in small canopy gaps, exhibiting high photosynthetic capacity, low leaf dark respiration and leaf-level light compensation points that were similar to the more shade-tolerant species. The superior net carbon gain of red oak seedlings at low and moderate light levels was likely facilitated by high leaf areas and reflected by seedling dry masses that were greater than the observed native European species. A competitive advantage for red oak was not evident because relative height growth was inferior to seedlings of co-occurring species. In North America, the inability of seedlings to compete with shade-tolerant tree species in deeply shaded understories is central to the problem of poor oak recruitment. Our study suggests that the ability of non-native red oak to perform equally well to native shade-tolerant species under a variety of light conditions could contribute to the consistent success of red oak regeneration

  1. Volatile compounds of red wines macerated with Spanish, American, and French oak chips.

    PubMed

    Rodríguez-Bencomo, Juan José; Ortega-Heras, Miriam; Pérez-Magariño, Silvia; González-Huerta, Carlos

    2009-07-22

    The volatile composition of a red wine aged for 2 months with three different Spanish oak chips (Quercus pyrenaica and Quercus petraea) from different regions of Castilla y León was compared with that of wines aged with American and French chips. In general, the extraction kinetics showed that the maximum concentration of the volatile compounds extracted from wood can be reached in only 1 month. In the final wines, the levels of furanic aldehydes and eugenol were higher in the wines macerated with Spanish chips, whereas cis-whiskey-lactone, vanillin, and methyl vanillate showed higher levels in wines treated with American chips. Among the wines treated with the different Spanish chips, the differences observed in the volatile composition were more related to the geographical origin of the forest than to the botanical species. In general, the wines macerated with Spanish chips showed levels of oak-related volatile compounds that were more similar to those macerated with French chips than to those macerated with American chips.

  2. Volatile compounds of red wines macerated with Spanish, American, and French oak chips.

    PubMed

    Rodríguez-Bencomo, Juan José; Ortega-Heras, Miriam; Pérez-Magariño, Silvia; González-Huerta, Carlos

    2009-07-22

    The volatile composition of a red wine aged for 2 months with three different Spanish oak chips (Quercus pyrenaica and Quercus petraea) from different regions of Castilla y León was compared with that of wines aged with American and French chips. In general, the extraction kinetics showed that the maximum concentration of the volatile compounds extracted from wood can be reached in only 1 month. In the final wines, the levels of furanic aldehydes and eugenol were higher in the wines macerated with Spanish chips, whereas cis-whiskey-lactone, vanillin, and methyl vanillate showed higher levels in wines treated with American chips. Among the wines treated with the different Spanish chips, the differences observed in the volatile composition were more related to the geographical origin of the forest than to the botanical species. In general, the wines macerated with Spanish chips showed levels of oak-related volatile compounds that were more similar to those macerated with French chips than to those macerated with American chips. PMID:19601669

  3. Influence of overstory density on ecophysiology of red oak (Quercus rubra) and sugar maple (Acer saccharum) seedlings in central Ontario shelterwoods.

    PubMed

    Parker, William C; Dey, Daniel C

    2008-05-01

    A field experiment was established in a second-growth hardwood forest dominated by red oak (Quercus rubra L.) to examine the effects of shelterwood overstory density on leaf gas exchange and seedling water status of planted red oak, naturally regenerated red oak and sugar maple (Acer saccharum Marsh.) seedlings during the first growing season following harvest. Canopy cover of uncut control stands and moderate and light shelterwoods averaged 97, 80 and 49%, respectively. Understory light and vapor pressure deficit (VPD) strongly influenced gas exchange responses to overstory reduction. Increased irradiance beneath the shelterwoods significantly increased net photosynthesis (P(n)) and leaf conductance to water vapor (G(wv)) of red oak and maple seedlings; however, P(n) and G(wv) of planted and naturally regenerated red oak seedlings were two to three times higher than those of sugar maple seedlings in both partial harvest treatments, due in large part to decreased stomatal limitation of gas exchange in red oak as a result of increased VPD in the shelterwoods. In both species, seedling water status was higher in the partial harvest treatments, as reflected by the higher predawn leaf water potential and seedling water-use efficiency in seedlings in shelterwoods than in uncut stands. Within a treatment, planted and natural red oak seedlings exhibited similar leaf gas exchange rates and water status, indicating little adverse physiological effect of transplanting. We conclude that the use of shelterwoods favors photosynthetic potential of red oak over sugar maple, and should improve red oak regeneration in Ontario.

  4. Sensory-directed identification of taste-active ellagitannins in American (Quercus alba L.) and European oak wood (Quercus robur L.) and quantitative analysis in bourbon whiskey and oak-matured red wines.

    PubMed

    Glabasnia, Arne; Hofmann, Thomas

    2006-05-01

    Aimed at increasing our knowledge on the sensory-active nonvolatiles migrating from oak wood into alcoholic beverages upon cooperaging, an aqueous ethanolic extract prepared from oak wood chips (Quercus alba L.) was screened for its key taste compounds by application of the taste dilution analysis. Purification of the compounds perceived with the highest sensory impacts, followed by liquid chromatography/mass spectrometry as well as one-dimensional and two-dimensional NMR experiments, revealed the ellagitannins vescalagin, castalagin, and grandinin, the roburins A-E, and 33-deoxy-33-carboxyvescalagin as the key molecules imparting an astringent oral sensation. To the best of our knowledge, 33-deoxy-33-carboxyvescalagin has as yet not been reported as a phytochemical in Q. alba L. In addition, the sensory activity of these ellagitannins was determined for the first time on the basis of their human threshold concentrations and dose/response functions. Furthermore, the ellagitannins have been quantitatively determined in extracts prepared from Q. alba L. and Quercus robur L., respectively, as well as in bourbon whiskey and oak-matured red wines, and the sensory contribution of the individual compounds has been evaluated for the first time on the basis of dose/activity considerations.

  5. Sensory-directed identification of taste-active ellagitannins in American (Quercus alba L.) and European oak wood (Quercus robur L.) and quantitative analysis in bourbon whiskey and oak-matured red wines.

    PubMed

    Glabasnia, Arne; Hofmann, Thomas

    2006-05-01

    Aimed at increasing our knowledge on the sensory-active nonvolatiles migrating from oak wood into alcoholic beverages upon cooperaging, an aqueous ethanolic extract prepared from oak wood chips (Quercus alba L.) was screened for its key taste compounds by application of the taste dilution analysis. Purification of the compounds perceived with the highest sensory impacts, followed by liquid chromatography/mass spectrometry as well as one-dimensional and two-dimensional NMR experiments, revealed the ellagitannins vescalagin, castalagin, and grandinin, the roburins A-E, and 33-deoxy-33-carboxyvescalagin as the key molecules imparting an astringent oral sensation. To the best of our knowledge, 33-deoxy-33-carboxyvescalagin has as yet not been reported as a phytochemical in Q. alba L. In addition, the sensory activity of these ellagitannins was determined for the first time on the basis of their human threshold concentrations and dose/response functions. Furthermore, the ellagitannins have been quantitatively determined in extracts prepared from Q. alba L. and Quercus robur L., respectively, as well as in bourbon whiskey and oak-matured red wines, and the sensory contribution of the individual compounds has been evaluated for the first time on the basis of dose/activity considerations. PMID:16637699

  6. Preliminary appraisal of the hydrology of the Red Oak area, Latimer County, Oklahoma

    USGS Publications Warehouse

    Marcher, M.V.; Bergman, D.L.; Stoner, J.D.; Blumer, S.P.

    1983-01-01

    Bed rock in the Red Oak area consists of shale, siltstone, and sandstone of the McAlester and Savanna Formations of Pennsylvanian age. Water in bedrock occurs in bedding planes, joints, and fractures and is confined. The potentiometric surface generally is less than 20 feet below the land surface. Wells yield enough water for domestic and stock use, but larger amounts of ground water are not available. Ground water commonly is a sodium or mixed cation carbonate/bicarbonate type with dissolved-solids concentrations ranging from 321 to 714 milligrams per liter. Although variable in quality, ground water generally is suitable for domestic use. No relationship between water chemistry and well depth or location is apparent. Brazil Creek, the principal stream in the area, has no flow 15 percent of the time, and flow is less than 1 cubic foot per second about 25 percent of the time. Water in Brazil Creek is a mixed cation carbonate/bicarbonate type. Dissolved-solids concentrations in Brazil Creek upstream from areas of old and recent mining ranged from 31 to 99 milligrams per liter with a mean of 58 milligrams per liter, whereas concentrations downstream from the mine areas ranged from 49 to 596 milligrams per liter with a mean of 132 milligrams per liter. Water in Brazil and Rock Creeks had concentrations of cadmium, chromium, lead, and mercury that exceeded maximum contaminant levels established by the U.S. Environmental Protection Agency at least once during the 1979-81 water years. Maximum suspended-sediment discharge, in tons per day, was 2,500 for Brazil Creek and 3,318 for Rock Creek. Silt-clay particles (diameters less than 0.062 millimeter) were the dominant sediment size. A significant hydrologic effect of surface mining is creation of additional water storage in mine ponds; one such pond supplies water for the town of Red Oak. Other effects or potential effects of surface mining include changes in rock permeability and ground-water storage, changes in drainage

  7. Differential effects of sugar maple, red oak, and hemlock tannins on carbon and nitrogen cycling in temperate forest soils.

    PubMed

    Talbot, Jennifer M; Finzi, Adrien C

    2008-03-01

    Tannins are abundant secondary chemicals in leaf litter that are hypothesized to slow the rate of soil-N cycling by binding protein into recalcitrant polyphenol-protein complexes (PPCs). We studied the effects of tannins purified from sugar maple, red oak, and eastern hemlock leaf litter on microbial activity and N cycling in soils from northern hardwood-conifer forests of the northeastern US. To create ecologically relevant conditions, we applied tannins to soil at a concentration (up to 2 mg g(-1) soil) typical of mineral soil horizons. Sugar maple tannins increased microbial respiration significantly more than red oak or hemlock tannins. The addition of sugar maple tannins also decreased gross N mineralization by 130% and, depending upon the rate of application, decreased net rates of N mineralization by 50-290%. At low concentrations, the decrease in mineralization appeared to be driven by greater microbial-N immobilization, while at higher concentrations the decrease in mineralization was consistent with the formation of recalcitrant PPCs. Low concentrations of red oak and hemlock tannins stimulated microbial respiration only slightly, and did not significantly affect fluxes of inorganic N in the soil. When applied to soils containing elevated levels of protein, red oak and hemlock tannins decreased N mineralization without affecting rates of microbial respiration, suggesting that PPC formation decreased substrate availability for microbial immobilization. Our results indicate that tannins from all three species form recalcitrant PPCs, but that the degree of PPC formation and its attendant effect on soil-N cycling depends on tannin concentration and the pool size of available protein in the soil.

  8. Sedimentation and petrology of Fanshawe sand, Red Oak field, Arkoma basin, Oklahoma

    SciTech Connect

    Pittman, E.D.; Wray, L.L. )

    1989-08-01

    The Fanshawe sand, a very fine to fine-grained lithic sandstone, probably formed in moderate to deep water downslope from a delta system to the east. Sediment-laden discharge flowed from east to west as channelized, bottom-hugging density currents. Deposition of the Fanshawe sand seems to have been restricted to a west-southwest-trending zone approximately 2 mi wide on the north side of Red Oak field. The sand is a composite of a series of narrow, shifting, meandering submarine channels that often are stacked. Stratigraphic cross sections show extreme variability, even along depositional strike, and individual channels typically are narrower than the distance between development wells. Reservoir quality is enhanced where these narrow channels coalesce horizontally and vertically. Net sand thickness ranges from 36 to 180 ft with associated reserves of up to 14 bcf/well. Completion rates can reach 8 mmcf/day with decline rates averaging 6%. Preliminary results of an increased density drilling program further substantiate the narrow, sinuous nature of these fan channels. Air drilling causes severe hole washouts, making net pay determinations questionable. But by mapping overall net sand trends, it is possible to high-grade drilling prospects. Prediction of porosity development, however, remains difficult. Porosity in the Fanshawe is due to (1) precipitation of pore-lining chlorite, which retarded quartz cementation by blocking potential nucleation sites on detrital quartz grains and preserved primary porosity, and (2) dissolution of feldspars and lithic fragments. The better reservoir rock has both porosity types. Where pore-lining chlorite was absent, thin, or discontinuous, quartz overgrowths developed and intergranular porosity decreased. This created a pore geometry consisting of poorly interconnected, disseminated, intragranular/moldic, dissolution pores and low permeability.

  9. Changes in chemical composition of a red wine aged in acacia, cherry, chestnut, mulberry, and oak wood barrels.

    PubMed

    De Rosso, Mirko; Panighel, Annarita; Dalla Vedova, Antonio; Stella, Laura; Flamini, Riccardo

    2009-03-11

    Aging in wooden barrels is a process used to stabilize the color and enrich the sensorial characteristics of wine. Many compounds are released from wood into the wine; oxygen permeation through the wood favors formation of new anthocyanin and tannin derivatives. Recently, polyphenols and volatile compounds released from acacia, chestnut, cherry, mulberry, and oak wood used in making barrels for spirits and wine aging were studied. Here, changes in volatile and polyphenolic compositions of a red wine aged for 9 months in acacia, cherry, chestnut, mulberry, and oak barrels are studied. Mulberry showed significant decreases of fruity-note ethyl esters and ethylguaiacol and a great cession of ethylphenol (horsey-odor defect). Cherry promoted the highest polyphenol oxidation, making it less suitable for long aging. LC/ESI-MS(n) showed the relevant presence of cis- and trans-piceatannol in mulberry-aged wine, a phytoalexin with antileukemia and antimelanoma activities.

  10. Comparative changes in color features and pigment composition of red wines aged in oak and cherry wood casks.

    PubMed

    Chinnici, Fabio; Natali, Nadia; Sonni, Francesca; Bellachioma, Attilio; Riponi, Claudio

    2011-06-22

    The color features and the evolution of both the monomeric and the derived pigments of red wines aged in oak and cherry 225 L barriques have been investigated during a four months period. For cherry wood, the utilization of 1000 L casks was tested as well. The use of cherry casks resulted in a faster evolution of pigments with a rapid decline of monomeric anthocyanins and a quick augmentation formation of derived and polymeric compounds. At the end of the aging, wines stored in oak and cherry barriques lost, respectively, about 20% and 80% of the initial pigment amount, while in the 1000 L cherry casks, the same compounds diminished by about 60%. Ethyl-bridged adducts and vitisins were the main class of derivatives formed, representing up to 25% of the total pigment amount in the cherry aged samples. Color density augmented in both the oak and cherry wood aged samples, but the latter had the highest values of this parameter. Because of the highly oxidative behavior of the cherry barriques, the use of larger casks (e.g., 1000 L) is proposed in the case of prolonged aging times. PMID:21548629

  11. Comparative changes in color features and pigment composition of red wines aged in oak and cherry wood casks.

    PubMed

    Chinnici, Fabio; Natali, Nadia; Sonni, Francesca; Bellachioma, Attilio; Riponi, Claudio

    2011-06-22

    The color features and the evolution of both the monomeric and the derived pigments of red wines aged in oak and cherry 225 L barriques have been investigated during a four months period. For cherry wood, the utilization of 1000 L casks was tested as well. The use of cherry casks resulted in a faster evolution of pigments with a rapid decline of monomeric anthocyanins and a quick augmentation formation of derived and polymeric compounds. At the end of the aging, wines stored in oak and cherry barriques lost, respectively, about 20% and 80% of the initial pigment amount, while in the 1000 L cherry casks, the same compounds diminished by about 60%. Ethyl-bridged adducts and vitisins were the main class of derivatives formed, representing up to 25% of the total pigment amount in the cherry aged samples. Color density augmented in both the oak and cherry wood aged samples, but the latter had the highest values of this parameter. Because of the highly oxidative behavior of the cherry barriques, the use of larger casks (e.g., 1000 L) is proposed in the case of prolonged aging times.

  12. The chemodiversity of wines can reveal a metabologeography expression of cooperage oak wood.

    PubMed

    Gougeon, Régis D; Lucio, Marianna; Frommberger, Moritz; Peyron, Dominique; Chassagne, David; Alexandre, Hervé; Feuillat, François; Voilley, Andrée; Cayot, Philippe; Gebefügi, Istvan; Hertkorn, Norbert; Schmitt-Kopplin, Philippe

    2009-06-01

    Wine chemical compositions, which result from a complex interplay between environmental factors, genetic factors, and viticultural practices, have mostly been studied using targeted analyses of selected families of metabolites. Detailed studies have particularly concerned volatile and polyphenolic compounds because of their acknowledged roles in the organoleptic and therapeutic properties. However, we show that an unprecedented chemical diversity of wine composition can be unraveled through a nontargeted approach by ultrahigh-resolution mass spectrometry, which provides an instantaneous image of complex interacting processes, not easily or possibly resolvable into their unambiguous individual contributions. In particular, the statistical analysis of a series of barrel-aged wines revealed that 10-year-old wines still express a metabologeographic signature of the forest location where oaks of the barrel in which they were aged have grown. PMID:19470460

  13. The chemodiversity of wines can reveal a metabologeography expression of cooperage oak wood

    PubMed Central

    Gougeon, Régis D.; Lucio, Marianna; Frommberger, Moritz; Peyron, Dominique; Chassagne, David; Alexandre, Hervé; Feuillat, François; Voilley, Andrée; Cayot, Philippe; Gebefügi, Istvan; Hertkorn, Norbert; Schmitt-Kopplin, Philippe

    2009-01-01

    Wine chemical compositions, which result from a complex interplay between environmental factors, genetic factors, and viticultural practices, have mostly been studied using targeted analyses of selected families of metabolites. Detailed studies have particularly concerned volatile and polyphenolic compounds because of their acknowledged roles in the organoleptic and therapeutic properties. However, we show that an unprecedented chemical diversity of wine composition can be unraveled through a nontargeted approach by ultrahigh-resolution mass spectrometry, which provides an instantaneous image of complex interacting processes, not easily or possibly resolvable into their unambiguous individual contributions. In particular, the statistical analysis of a series of barrel-aged wines revealed that 10-year-old wines still express a metabologeographic signature of the forest location where oaks of the barrel in which they were aged have grown. PMID:19470460

  14. Spatial heterogeneity in the relative impacts of foliar quality and predation pressure on red oak, Quercus rubra, arthropod communities.

    PubMed

    Zehnder, Caralyn B; Stodola, Kirk W; Cooper, Robert J; Hunter, Mark D

    2010-12-01

    Predation pressure and resource availability often interact in structuring herbivore communities, with their relative influence varying in space and time. The operation of multiple ecological pressures and guild-specific herbivore responses may combine to override simple predictions of how the roles of plant quality and predation pressure vary in space. For 2 years at the Coweeta LTER in the Southern Appalachian Mountains, we conducted a bird exclosure experiment on red oak (Quercus rubra) saplings to investigate the effects of bird predation on red oak arthropod communities. We established bird exclosures at six sites along an elevational gradient and estimated variation in foliar nitrogen and bird predation pressure along this gradient. Foliar nitrogen concentrations increased with elevation while our index of bird predation pressure was variable across sites. Greater arthropod densities were detected inside exclosures; however, this result was mainly driven by the response of phloem feeders which were much more prevalent inside exclosures than on control trees. There was little evidence for an effect of bird predation on the other arthropod guilds. Consequently, there was no evidence of a trophic cascade either in terms of leaf damage or tree growth. Finally, we found more variation in arthropod density among trees within sites than variation in arthropod density among sites, indicating the importance of micro-site variation in structuring arthropod communities. PMID:20711610

  15. Water use and carbon exchange of red oak- and eastern hemlock-dominated forests in the northeastern USA: implications for ecosystem-level effects of hemlock woolly adelgid.

    PubMed

    Hadley, Julian L; Kuzeja, Paul S; Daley, Michael J; Phillips, Nathan G; Mulcahy, Thomas; Singh, Safina

    2008-04-01

    Water use and carbon exchange of a red oak-dominated (Quercus rubra L.) forest and an eastern hemlock-dominated (Tsuga canadensis L.) forest, each located within the Harvard Forest in north-central Massachusetts, were measured for 2 years by the eddy flux method. Water use by the red oak forest reached 4 mm day(-1), compared to a maximum of 2 mm day(-1) by the eastern hemlock forest. Maximal carbon (C) uptake rate was also higher in the red oak forest than in the eastern hemlock forest (about 25 versus 15 micromol m(-2) s(-1)). Sap flux measurements indicated that transpiration of red oak, and also of black birch (Betula lenta L.), which frequently replaces eastern hemlock killed by hemlock woolly adelgid (Adelges tsugae Annand.), were almost twice that of eastern hemlock. Despite the difference between species in maximum summertime C assimilation rate, annual C storage of the eastern hemlock forest almost equaled that of the red oak forest because of net C uptake by eastern hemlock during unusually warm fall and spring weather, and a near-zero C balance during the winter. Thus, the effect on C storage of replacing eastern hemlock forest with a forest dominated by deciduous species is unclear. Carbon storage by eastern hemlock forests during fall, winter and spring is likely to increase in the event of climate warming, although this may be offset by C loss during hotter summers. Our results indicate that, although forest water use will decrease immediately following eastern hemlock mortality due to the hemlock woolly adelgid, the replacement of eastern hemlock by deciduous species such as red oak will likely increase summertime water use over current rates in areas where hemlock is a major forest species.

  16. Hydrocarbon Liquid Production via Catalytic Hydroprocessing of Phenolic Oils Fractionated from Fast Pyrolysis of Red Oak and Corn Stover

    DOE PAGES

    Elliott, Douglas C.; Wang, Huamin; Rover, Majorie; Whitmer, Lysle; Smith, Ryan; Brown, Robert C.

    2015-04-13

    Phenolic oils were produced from fast pyrolysis of two different biomass feedstocks, red oak and corn stover and evaluated in hydroprocessing tests for production of liquid hydrocarbon products. The phenolic oils were produced with a bio-oil fractionating process in combination with a simple water wash of the heavy ends from the fractionating process. Phenolic oils derived from the pyrolysis of red oak and corn stover were recovered with yields (wet biomass basis) of 28.7 wt% and 14.9 wt%, respectively, and 54.3% and 58.6% on a carbon basis. Both precious metal catalysts and sulfided base metal catalyst were evaluated for hydrotreatingmore » the phenolic oils, as an extrapolation from whole bio-oil hydrotreatment. They were effective in removing heteroatoms with carbon yields as high as 81% (unadjusted for the 90% carbon balance). There was nearly complete heteroatom removal with residual O of only 0.4% to 5%, while N and S were reduced to less than 0.05%. Use of the precious metal catalysts resulted in more saturated products less completely hydrotreated compared to the sulfided base metal catalyst, which was operated at higher temperature. The liquid product was 42-52% gasoline range molecules and about 43% diesel range molecules. Particulate matter in the phenolic oils complicated operation of the reactors, causing plugging in the fixed-beds especially for the corn stover phenolic oil. This difficulty contrasts with the catalyst bed fouling and plugging, which is typically seen with hydrotreatment of whole bio-oil. This problem was substantially alleviated by filtering the phenolic oils before hydrotreating. More thorough washing of the phenolic oils during their preparation from the heavy ends of bio-oil or on-line filtration of pyrolysis vapors to remove particulate matter before condensation of the bio-oil fractions is recommended.« less

  17. Hydrocarbon Liquid Production via Catalytic Hydroprocessing of Phenolic Oils Fractionated from Fast Pyrolysis of Red Oak and Corn Stover

    SciTech Connect

    Elliott, Douglas C.; Wang, Huamin; Rover, Majorie; Whitmer, Lysle; Smith, Ryan; Brown, Robert C.

    2015-04-13

    Phenolic oils were produced from fast pyrolysis of two different biomass feedstocks, red oak and corn stover and evaluated in hydroprocessing tests for production of liquid hydrocarbon products. The phenolic oils were produced with a bio-oil fractionating process in combination with a simple water wash of the heavy ends from the fractionating process. Phenolic oils derived from the pyrolysis of red oak and corn stover were recovered with yields (wet biomass basis) of 28.7 wt% and 14.9 wt%, respectively, and 54.3% and 58.6% on a carbon basis. Both precious metal catalysts and sulfided base metal catalyst were evaluated for hydrotreating the phenolic oils, as an extrapolation from whole bio-oil hydrotreatment. They were effective in removing heteroatoms with carbon yields as high as 81% (unadjusted for the 90% carbon balance). There was nearly complete heteroatom removal with residual O of only 0.4% to 5%, while N and S were reduced to less than 0.05%. Use of the precious metal catalysts resulted in more saturated products less completely hydrotreated compared to the sulfided base metal catalyst, which was operated at higher temperature. The liquid product was 42-52% gasoline range molecules and about 43% diesel range molecules. Particulate matter in the phenolic oils complicated operation of the reactors, causing plugging in the fixed-beds especially for the corn stover phenolic oil. This difficulty contrasts with the catalyst bed fouling and plugging, which is typically seen with hydrotreatment of whole bio-oil. This problem was substantially alleviated by filtering the phenolic oils before hydrotreating. More thorough washing of the phenolic oils during their preparation from the heavy ends of bio-oil or on-line filtration of pyrolysis vapors to remove particulate matter before condensation of the bio-oil fractions is recommended.

  18. Polyphenols in red wine aged in acacia (Robinia pseudoacacia) and oak (Quercus petraea) wood barrels.

    PubMed

    Sanz, Miriam; Fernández de Simón, Brígida; Esteruelas, Enrique; Muñoz, Angel Ma; Cadahía, Estrella; Hernández, Ma Teresa; Estrella, Isabel; Martinez, Juana

    2012-06-30

    Polyphenolic composition of two Syrah wines aged during 6 or 12 months in medium toasting acacia and oak 225L barrels was studied by LC-DAD-ESI/MS. A total of 43 nonanthocyanic phenolic compounds were found in all wines, and other 15 compounds only in the wines from acacia barrels. Thus, the nonanthocyanic phenolic profile could be a useful tool to identify the wines aged in acacia barrels. Among all of them the dihydrorobinetin highlights because of its high levels, but also robinetin, 2,4-dihydroxybenzaldehyde, a tetrahydroxydihydroflavonol, fustin, butin, a trihydroxymethoxydihydroflavonol and 2,4-dihydroxybenzoic acid were detected at appreciable levels in wines during aging in acacia barrels, and could be used as phenolic markers for authenticity purposes. Although longer contact time with acacia wood mean higher concentrations of phenolic markers found in wines, the identification of these wines will also be easy after short aging times due the high levels reached by these compounds, even after only 2 months of aging.

  19. Gas exchange in Quercus rubra (northern red oak) during a drought: analysis of relations among photosynthesis, transpiration, and leaf conductance.

    PubMed

    Weber, J. A.; Gates, D. M.

    1990-12-01

    Development of water stress in leaves of mature Quercus rubra L. caused a marked midday depression in photosynthesis (A) and transpiration (E). At external CO(2) partial pressures of 100-110 Pa, a constant temperature of 30 degrees C and a constant photosynthetic photon flux density of about 1000 micromol m(-2) s(-1), A was 8 micromol m(-2) at low leaf water potentials (-1.5 to -2.0 MPa), whereas it was 20 micromol m(-2) s(-1) in non-stressed leaves (-1.0 MPa). At lower external CO(2) partial pressures, the effect of low leaf water potential on A was less. The midday depression in gas exchange was relieved by an overnight rain of 2.5 cm. No difference in carboxylation efficiency or CO(2) compensation point was found between leaves before and after rain, The relationship between A and E was linear for a given external CO(2) partial pressure, but the slope varied with CO(2) concentration. Modification of the model of stomatal response proposed by Ball et al. (1987) produced a linear relationship between leaf conductance and a factor incorporating A, relative humidity, and CO(2). The data indicate that gas exchange in leaves of mature northern red oak respond rapidly to relief of drought with no indication of long-term photoinhibition. PMID:14972919

  20. Changing Climate and Wind Patterns Revealed in Indiana's Fair Oaks Dunes

    NASA Astrophysics Data System (ADS)

    Kilibarda, Z.

    2004-12-01

    Fair Oak Dunes (FOD) cover over 1100 square miles in north-central Indiana. Careful study of dune morphology reveals three types of dunes in regards to their size. The first order forms are compound parabolic dunes that reach over five miles in length and have the apex of parabola pointing in a southwesterly direction. The spacing between these dunes is three to five miles. The second order dune ridges are compound parabolic dunes that range in size from one to three miles in length with spacing of about one mile between the ridges. Both, the second order and the third order dunes have the apex of parabola pointing in northeasterly direction, opposite of the first order dunes. The third order dune ridges are simple parabolic dunes that reach up to half mile in length and are 25 to 30 feet tall in western part to over 45 feet in the eastern part of the FOD. All dunes are fixed by lush vegetation. Preliminary grain size analyses indicate that north part of FOD has coarser sand (0.283 mm) than southern part (0.197 mm), while eastern part (0.271 mm) is coarser than the western part (0.223 mm). This grain size distribution is in accordance with initial interpretation of dune morphology. Strong northeasterly winds associated with anticyclone were prevalent in early dune formation about 14,000 years ago near the end of last glacial. The finest particles were blown south and southwest from the source area which was north and east of the present dunes. Cyclonic southwesterly winds become dominant in Holocene and caused a reworking of the original large dunes into smaller forms as well as removal of some of the finest particles back to the original source to the northeast. Limited vertical dune profiles indicate that below the 5 feet of bioturbated surface layer are alternating light layers (3 to 5 inch thick) and dark laminae (1-2 inches thick). Dark laminae consist of quartz grains with `hairy' surfaces covered with reddish iron oxides or clays. They contain twice as much

  1. Revealing the power of the natural red pigment lycopene.

    PubMed

    Kong, Kin-Weng; Khoo, Hock-Eng; Prasad, K Nagendra; Ismail, Amin; Tan, Chin-Ping; Rajab, Nor Fadilah

    2010-02-23

    By-products derived from food processing are attractive source for their valuable bioactive components and color pigments. These by-products are useful for development as functional foods, nutraceuticals, food ingredients, additives, and also as cosmetic products. Lycopene is a bioactive red colored pigment naturally occurring in plants. Industrial by-products obtained from the plants are the good sources of lycopene. Interest in lycopene is increasing due to increasing evidence proving its preventive properties toward numerous diseases. In vitro, in vivo and ex vivo studies have demonstrated that lycopene-rich foods are inversely associated to diseases such as cancers, cardiovascular diseases, diabetes, and others. This paper also reviews the properties, absorption, transportation, and distribution of lycopene and its by-products in human body. The mechanism of action and interaction of lycopene with other bioactive compounds are also discussed, because these are the crucial features for beneficial role of lycopene. However, information on the effect of food processing on lycopene stability and availability was discussed for better understanding of its characteristics.

  2. Effectiveness of two-sided UV-C treatments in inhibiting natural microflora and extending the shelf-life of minimally processed 'Red Oak Leaf' lettuce.

    PubMed

    Allende, Ana; McEvoy, James L; Luo, Yaguang; Artes, Francisco; Wang, Chien Y

    2006-05-01

    The use of UV-C radiation treatments to inhibit the microbial growth and extend the shelf-life of minimally processed 'Red Oak Leaf' lettuce was investigated. Initially, UV-C resistance of 20 bacterial strains from different genera often associated with fresh produce (Enterobacter, Erwinia, Escherichia, Leuconostoc, Pantoea, Pseudomonas, Rahnela, Salmonella, Serratia and Yersinia) were tested in vitro. Most of the bacterial strains were inhibited with the minimum dose (30 J m(-2)). Erwinia carotovora, Leuconostoc carnosum, Salmonella typhimurium, and Yersinia aldovae were the most resistant strains requiring a UV-C dose of 85 J m(-2) to completely inhibit growth. An in vivo study consisted of treating minimally processed 'Red Oak Leaf' lettuce (Lactuca sativa) with UV-C at three radiation doses (1.18, 2.37 and 7.11 kJ m(-2)) on each side of the leaves and storing the product under passive MAP conditions at 5 degrees C for up to 10 days. The gas composition inside packages varied significantly among the treatments, with CO2 concentrations positively and O2 concentrations negatively correlating with the radiation dose. All the radiation doses were effective in reducing the natural microflora of the product, although the highest doses showed the greatest microbial inhibitions. Taking into account the microbial limit set by Spanish legislation [Boletín Oficial del Estado (BOE), 2001. Normas de higiene para la elaboración, distribución y comercio de comidas preparadas, Madrid, Spain, Real Decreto 3484/2000, pp. 1435-1441], all UV-C treatments extended the shelf-life of the product. However, the 7.11 kJ m(-2) dose induced tissue softening and browning after 7 days of storage at 5 degrees C. Therefore, the use of two sided UV-C radiation, at the proper dose, is effective in reducing the natural microflora and extending the shelf-life of minimally processed 'Red Oak Leaf' lettuce.

  3. Matrix-calibrated LC-MS/MS quantitation and sensory evaluation of oak Ellagitannins and their transformation products in red wines.

    PubMed

    Stark, Timo; Wollmann, Nadine; Wenker, Kerstin; Lösch, Sofie; Glabasnia, Arne; Hofmann, Thomas

    2010-05-26

    Aimed at investigating the concentrations and taste contribution of the oak-derived ellagitannins castalagin and vescalagin as well as their transformation products acutissimin A/B, epiacutissimin A/B, and beta-1-O-ethylvescalagin in red wine, a highly sensitive and accurate quantification method was developed on the basis of LC-MS/MS-MRM analysis with matrix calibration. Method validation showed good recovery rates ranging from 102.4 +/- 5.9% (vescalagin) to 113.7 +/- 15.2% (epiacutissimin A). In oak-matured wines, castalagin was found as the predominant ellagitannin, followed by beta-1-O-ethylvescalagin, whereas the flavano-C-ellagitannins (epi)acutissimin A/B were present in significantly lower amounts. In contrast to the high threshold concentration levels (600-1000 micromol/L) and the puckering astringent orosensation induced by flavan-3-ols, all of the ellagitannin derivatives were found to induce a smooth and velvety astringent oral sensation at rather low threshold concentrations ranging from 0.9 to 2.8 micromol/L. Dose/activity considerations demonstrated that, among all the ellagitannins investigated, castalagin exclusively exceeded its threshold concentration in various oak-matured wine samples.

  4. Volatile compounds and sensorial characterisation of red wine aged in cherry, chestnut, false acacia, ash and oak wood barrels.

    PubMed

    Fernández de Simón, B; Martínez, J; Sanz, M; Cadahía, E; Esteruelas, E; Muñoz, A M

    2014-03-15

    The wood-related volatile profile of wines aged in cherry, acacia, ash, chestnut and oak wood barrels was studied by GC-MS, and could be a useful tool to identify the wood specie used. Thus, 2,4-dihydroxybenzaldehyde in wines aged in acacia barrels, and ethyl-2-benzoate in cherry barrels could be used as chemical markers of these wood species, for authenticity purposes. Also, the quantitative differences obtained in the volatile profiles allow a good classification of all wines regarding wood species of barrels, during all aging time, and they contributed with different intensities to aromatic and gustative characteristics of aged wines. Wines aged in oak were the best valuated during all aging time, but the differences were not always significant. The lowest scores were assigned to wines aged in cherry barrels from 6 months of aging, so this wood could be more suitable in short aging times.

  5. Effectiveness of two-sided UV-C treatments in inhibiting natural microflora and extending the shelf-life of minimally processed 'Red Oak Leaf' lettuce.

    PubMed

    Allende, Ana; McEvoy, James L; Luo, Yaguang; Artes, Francisco; Wang, Chien Y

    2006-05-01

    The use of UV-C radiation treatments to inhibit the microbial growth and extend the shelf-life of minimally processed 'Red Oak Leaf' lettuce was investigated. Initially, UV-C resistance of 20 bacterial strains from different genera often associated with fresh produce (Enterobacter, Erwinia, Escherichia, Leuconostoc, Pantoea, Pseudomonas, Rahnela, Salmonella, Serratia and Yersinia) were tested in vitro. Most of the bacterial strains were inhibited with the minimum dose (30 J m(-2)). Erwinia carotovora, Leuconostoc carnosum, Salmonella typhimurium, and Yersinia aldovae were the most resistant strains requiring a UV-C dose of 85 J m(-2) to completely inhibit growth. An in vivo study consisted of treating minimally processed 'Red Oak Leaf' lettuce (Lactuca sativa) with UV-C at three radiation doses (1.18, 2.37 and 7.11 kJ m(-2)) on each side of the leaves and storing the product under passive MAP conditions at 5 degrees C for up to 10 days. The gas composition inside packages varied significantly among the treatments, with CO2 concentrations positively and O2 concentrations negatively correlating with the radiation dose. All the radiation doses were effective in reducing the natural microflora of the product, although the highest doses showed the greatest microbial inhibitions. Taking into account the microbial limit set by Spanish legislation [Boletín Oficial del Estado (BOE), 2001. Normas de higiene para la elaboración, distribución y comercio de comidas preparadas, Madrid, Spain, Real Decreto 3484/2000, pp. 1435-1441], all UV-C treatments extended the shelf-life of the product. However, the 7.11 kJ m(-2) dose induced tissue softening and browning after 7 days of storage at 5 degrees C. Therefore, the use of two sided UV-C radiation, at the proper dose, is effective in reducing the natural microflora and extending the shelf-life of minimally processed 'Red Oak Leaf' lettuce. PMID:16943010

  6. Using stable isotopes to reconcile differences in nitrogen uptake efficiency relative to late season fertilization of northern red oak seedlings in Wisconsin bare-root nurseries

    NASA Astrophysics Data System (ADS)

    Fujinuma, R.; Balster, N. J.

    2009-12-01

    Cultural applications (e.g., timing, amount) of nitrogen (N) fertilizer in bareroot tree nurseries have been assessed for some time. However, the use of different metrologies to quantify the efficient use of fertilizer N and its allocation within biomass has confounded comparisons between fertilization regimes. This inconsistency is especially problematic when quantifying N fertilizer uptake efficiency (NFUE) of late season N fertilization in northern red oak (Quercus rubra L.) (NRO) seedlings characterized by episodic flushes in growth and N storage in perennial tissue to support spring growth. The use of isotopic tracers could help elucidate these differences. We therefore hypothesized that: 1) calculations of NFUE using isotopically enriched fertilizer would yield lower, more precise estimates of NFUE relative to traditional methods due to differences in the accounting of mineralized and reabsorbed N, and 2) a significant fraction of leaf N in older leaves (early flushes) would be reabsorbed into root and shoot tissue before abscission relative to leaves produced toward the end of the growing season (late flushes). To test these hypotheses, we conducted an experiment in two-year old NRO seedlings at two bare-root nurseries in Wisconsin. We applied a total of 147 mg N seedling-1 in pulses from early July after the seedlings completed their second leaf flush until late August. The treatments consisted of three replicated plots of 15N enriched (1.000 atom%) ammonium sulfate, three non-enriched plots, and three unfertilized plots (controls) at each nursery. Subsequent changes in plant N uptake and N allocation were quantified from destructively harvested samples taken at 40, 60, and 120 days after the fertilization began. We evaluated three common methods currently used to estimate NFUE (total N without control, total N with control, and isotopic difference). The total N without control method overestimated mean NFUE by 3.2 times relative to the isotope method

  7. Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea.

    PubMed

    Lee, On On; Wang, Yong; Yang, Jiangke; Lafi, Feras F; Al-Suwailem, Abdulaziz; Qian, Pei-Yuan

    2011-04-01

    Marine sponges are associated with a remarkable array of microorganisms. Using a tag pyrosequencing technology, this study was the first to investigate in depth the microbial communities associated with three Red Sea sponges, Hyrtios erectus, Stylissa carteri and Xestospongia testudinaria. We revealed highly diverse sponge-associated bacterial communities with up to 1000 microbial operational taxonomic units (OTUs) and richness estimates of up to 2000 species. Altogether, 26 bacterial phyla were detected from the Red Sea sponges, 11 of which were absent from the surrounding sea water and 4 were recorded in sponges for the first time. Up to 100 OTUs with richness estimates of up to 300 archaeal species were revealed from a single sponge species. This is by far the highest archaeal diversity ever recorded for sponges. A non-negligible proportion of unclassified reads was observed in sponges. Our results demonstrated that the sponge-associated microbial communities remained highly consistent in the same sponge species from different locations, although they varied at different degrees among different sponge species. A significant proportion of the tag sequences from the sponges could be assigned to one of the sponge-specific clusters previously defined. In addition, the sponge-associated microbial communities were consistently divergent from those present in the surrounding sea water. Our results suggest that the Red Sea sponges possess highly sponge-specific or even sponge-species-specific microbial communities that are resistant to environmental disturbance, and much of their microbial diversity remains to be explored. PMID:21085196

  8. Stemflow and soil water recharge during rainfall in a red pine chronosequence on the Oak Ridges Moraine, southern Ontario, Canada

    NASA Astrophysics Data System (ADS)

    Buttle, J. M.; Toye, H. J.; Greenwood, W. J.; Bialkowski, R.

    2014-09-01

    Stemflow focusses water delivery to the forest floor in a relatively small area surrounding the tree bole, with the potential to enhance soil water contents and water recharge relative to more distal sites beneath the canopy. These stemflow fluxes may decrease as a given tree species ages due to changes in branch orientation and bark roughness, suggesting that the relative contribution of stemflow to water recharge near the bole will decline with time. The hypothesis that stemflow fluxes decline with tree age was tested in a chronosequence of red pine (Pinus resinosa Ait.) stands in a managed forest in southern Ontario, Canada, and stemflow contributions to soil water recharge below 1 m depth were quantified. Throughfall, stemflow and sub-canopy soil water contents (0.1 m and 1.5 m from the tree bole to 1 m depth) in stands ranging from 28 to 80 years in age were studied from late-Spring to Fall in 2012, supplemented by artificial irrigations of stemflow to examine short-term soil wetting at the two distances from the bole. The hypothesized decline in stemflow with increasing tree age was not supported, and canopy cover variations and forest management exerted a greater control on inter-stand differences in stemflow fluxes. Stemflow contributions generally resulted in greater soil water recharge below 1 m depth at 0.1 m from the tree bole compared to the 1.5 m distance. This enhanced recharge was greatest for the youngest stand and differences in recharge between the 0.1 m and 1.5 m distances from the bole were likely not significant for stands between 40 and 80 years of age. Nevertheless, the relative contribution of stemflow to soil water recharge may increase in this managed forest as red pine stands give way to a mixed hardwood-conifer forest, due to greater stemflow fluxes from hardwood species in this landscape.

  9. Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean.

    PubMed

    Fortunato, Antonio Emidio; Jaubert, Marianne; Enomoto, Gen; Bouly, Jean-Pierre; Raniello, Raffaella; Thaler, Michael; Malviya, Shruti; Bernardes, Juliana Silva; Rappaport, Fabrice; Gentili, Bernard; Huysman, Marie J J; Carbone, Alessandra; Bowler, Chris; d'Alcalà, Maurizio Ribera; Ikeuchi, Masahiko; Falciatore, Angela

    2016-03-01

    The absorption of visible light in aquatic environments has led to the common assumption that aquatic organisms sense and adapt to penetrative blue/green light wavelengths but show little or no response to the more attenuated red/far-red wavelengths. Here, we show that two marine diatom species, Phaeodactylum tricornutum and Thalassiosira pseudonana, possess a bona fide red/far-red light sensing phytochrome (DPH) that uses biliverdin as a chromophore and displays accentuated red-shifted absorbance peaks compared with other characterized plant and algal phytochromes. Exposure to both red and far-red light causes changes in gene expression in P. tricornutum, and the responses to far-red light disappear in DPH knockout cells, demonstrating that P. tricornutum DPH mediates far-red light signaling. The identification of DPH genes in diverse diatom species widely distributed along the water column further emphasizes the ecological significance of far-red light sensing, raising questions about the sources of far-red light. Our analyses indicate that, although far-red wavelengths from sunlight are only detectable at the ocean surface, chlorophyll fluorescence and Raman scattering can generate red/far-red photons in deeper layers. This study opens up novel perspectives on phytochrome-mediated far-red light signaling in the ocean and on the light sensing and adaptive capabilities of marine phototrophs. PMID:26941092

  10. Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean.

    PubMed

    Fortunato, Antonio Emidio; Jaubert, Marianne; Enomoto, Gen; Bouly, Jean-Pierre; Raniello, Raffaella; Thaler, Michael; Malviya, Shruti; Bernardes, Juliana Silva; Rappaport, Fabrice; Gentili, Bernard; Huysman, Marie J J; Carbone, Alessandra; Bowler, Chris; d'Alcalà, Maurizio Ribera; Ikeuchi, Masahiko; Falciatore, Angela

    2016-03-01

    The absorption of visible light in aquatic environments has led to the common assumption that aquatic organisms sense and adapt to penetrative blue/green light wavelengths but show little or no response to the more attenuated red/far-red wavelengths. Here, we show that two marine diatom species, Phaeodactylum tricornutum and Thalassiosira pseudonana, possess a bona fide red/far-red light sensing phytochrome (DPH) that uses biliverdin as a chromophore and displays accentuated red-shifted absorbance peaks compared with other characterized plant and algal phytochromes. Exposure to both red and far-red light causes changes in gene expression in P. tricornutum, and the responses to far-red light disappear in DPH knockout cells, demonstrating that P. tricornutum DPH mediates far-red light signaling. The identification of DPH genes in diverse diatom species widely distributed along the water column further emphasizes the ecological significance of far-red light sensing, raising questions about the sources of far-red light. Our analyses indicate that, although far-red wavelengths from sunlight are only detectable at the ocean surface, chlorophyll fluorescence and Raman scattering can generate red/far-red photons in deeper layers. This study opens up novel perspectives on phytochrome-mediated far-red light signaling in the ocean and on the light sensing and adaptive capabilities of marine phototrophs.

  11. Realized reproductive success of polygynous red-winged blackbirds revealed by DNA markers.

    PubMed

    Gibbs, H L; Weatherhead, P J; Boag, P T; White, B N; Tabak, L M; Hoysak, D J

    1990-12-01

    Hypervariable genetic markers, including a novel locus-specific marker detected by a mouse major histocompatibility complex probe, reveal that multiple paternity is common in families of polygynous red-winged blackbirds (Agelaius phoeniceus). Almost half of all nests contained at least one chick resulting from an extra-pair fertilization, usually by a neighboring male. Genetically based measures of reproductive success show that individual males realize more than 20% of their overall success from extra-pair fertilizations, on average, and that this form of mating behavior confounds traditional measures of male success. The importance of alternative reproductive tactics in a polygynous bird is quantified, and the results challenge previous explanations for the evolution of avian polygny.

  12. The taxonomy of the Japanese oak red scale insect, Kuwania quercus (Kuwana) (Hemiptera: Coccoidea: Kuwaniidae), with a generic diagnosis, a key to species and description of a new species from California.

    PubMed

    San'An, Wu; Nan, Nan; Gullan, Penny; Deng, Jun

    2013-01-01

    The oak red scale insect, Kuwania quercus (Kuwana), was described from specimens collected from the bark of oak trees (Quercus species) in Japan. More recently, the species has been identified from California and China, but Californian specimens differ morphologically from Japanese material and are considered here to be a new species based on both morphological and molecular data. In this paper, an illustrated redescription of K. quercus is provided based on type specimens consisting of adult females, first-instar nymphs and intermediate-stage females, and a lectotype is designated for Sasakia quercus Kuwana. The new Californian species, Kuwania raygilli Wu & Gullan, is described and illustrated based on the adult female, first-instar nymph and intermediate-stage female. A new generic diagnosis for Kuwania Cockerell based on adult females and first-instar nymphs, and a key to species based on adult females are included.

  13. REVEALING PROBABLE UNIVERSAL FEATURES IN THE LOWER RED GIANT BRANCH LUMINOSITY FUNCTIONS OF GALACTIC GLOBULAR CLUSTERS

    SciTech Connect

    Kravtsov, V. V.

    2009-06-15

    This paper aims at demonstrating, for the first time, very probable universal peculiarities of the evolution of stars in the lower red giant branch (RGB) of Galactic globular clusters (GCs), reflected in two corresponding dips in the luminosity functions (LFs). By relying on the database of Hubble Space Telescope photometry of GCs, we analyze the lower RGB LFs of a sample of 18 GCs in a wide metallicity range, {delta}[Fe/H] {approx} 1.9 dex. We first show that in the F555W-(F439W-F555W) color-magnitude diagrams (CMDs), the lower RGB of GCs, except for the most metal-poor of them, frequently shows an apparent 'knee'. It reveals itself as a fairly abrupt change of the RGB slope. At the same luminosity level, the RGB LFs show a feature in the form of a more or less pronounced dip. We find that the magnitude difference between the RGB base and the given feature is, on average, around {delta} F555W{sup dip} {sub base}{approx} 1.4 mag. It shows a marginal variation with metallicity, if any, comparable to the error. At the same time, the magnitude difference between the dip and the RGB bump, {delta} F555W{sup bump} {sub dip}, decreases with increasing metallicity and falls within the range 0.8 {approx}< {delta} F555W{sup bump} {sub dip} {approx}< 1.7 mag. Generalized LFs (GLFs) have been obtained for three subsamples of GCs within limited metallicity ranges and with different horizontal branch (HB) morphology. They reproduce the 'knee-related' dip that is statistically significant in two of the GLFs. This feature turns out to be more pronounced in the GLFs of GCs with either the blue or red HB morphology than with the intermediate one. The same GLFs also reveal an additional probable universal dip. It shows up below the RGB bump at {delta} F555W slightly increasing from {approx}0.3 to {approx}0.5 mag with increasing metallicity. Also, the statistical significance of this 'prebump' dip increases, on average, toward higher metallicity. Except for the well known RGB bump, no

  14. Novel Features of Eukaryotic Photosystem II Revealed by Its Crystal Structure Analysis from a Red Alga.

    PubMed

    Ago, Hideo; Adachi, Hideyuki; Umena, Yasufumi; Tashiro, Takayoshi; Kawakami, Keisuke; Kamiya, Nobuo; Tian, Lirong; Han, Guangye; Kuang, Tingyun; Liu, Zheyi; Wang, Fangjun; Zou, Hanfa; Enami, Isao; Miyano, Masashi; Shen, Jian-Ren

    2016-03-11

    Photosystem II (PSII) catalyzes light-induced water splitting, leading to the evolution of molecular oxygen indispensible for life on the earth. The crystal structure of PSII from cyanobacteria has been solved at an atomic level, but the structure of eukaryotic PSII has not been analyzed. Because eukaryotic PSII possesses additional subunits not found in cyanobacterial PSII, it is important to solve the structure of eukaryotic PSII to elucidate their detailed functions, as well as evolutionary relationships. Here we report the structure of PSII from a red alga Cyanidium caldarium at 2.76 Å resolution, which revealed the structure and interaction sites of PsbQ', a unique, fourth extrinsic protein required for stabilizing the oxygen-evolving complex in the lumenal surface of PSII. The PsbQ' subunit was found to be located underneath CP43 in the vicinity of PsbV, and its structure is characterized by a bundle of four up-down helices arranged in a similar way to those of cyanobacterial and higher plant PsbQ, although helices I and II of PsbQ' were kinked relative to its higher plant counterpart because of its interactions with CP43. Furthermore, two novel transmembrane helices were found in the red algal PSII that are not present in cyanobacterial PSII; one of these helices may correspond to PsbW found only in eukaryotic PSII. The present results represent the first crystal structure of PSII from eukaryotic oxygenic organisms, which were discussed in comparison with the structure of cyanobacterial PSII.

  15. Development of secondary woodland in oak wood pastures reduces the richness of rare epiphytic lichens.

    PubMed

    Paltto, Heidi; Nordberg, Anna; Nordén, Björn; Snäll, Tord

    2011-01-01

    Wooded pastures with ancient trees were formerly abundant throughout Europe, but during the last century, grazing has largely been abandoned often resulting in dense forests. Ancient trees constitute habitat for many declining and threatened species, but the effects of secondary woodland on the biodiversity associated with these trees are largely unknown. We tested for difference in species richness, occurrence, and abundance of a set of nationally and regionally red-listed epiphytic lichens between ancient oaks located in secondary woodland and ancient oaks located in open conditions. We refined the test of the effect of secondary woodland by also including other explanatory variables. Species occurrence and abundance were modelled jointly using overdispersed zero-inflated Poisson models. The richness of the red-listed lichens on ancient oaks in secondary woodland was half of that compared with oaks growing in open conditions. The species-level analyses revealed that this was mainly the result of lower occupancy of two of the study species. The tree-level abundance of one species was also lower in secondary woodland. Potential explanations for this pattern are that the study lichens are adapted to desiccating conditions enhancing their population persistence by low competition or that open, windy conditions enhance their colonisation rate. This means that the development of secondary woodland is a threat to red-listed epiphytic lichens. We therefore suggest that woody vegetation is cleared and grazing resumed in abandoned oak pastures. Importantly, this will also benefit the vitality of the oaks.

  16. Endoscopic exploration of Red Sea coral reefs reveals dense populations of cavity-dwelling sponges.

    PubMed

    Richter, C; Wunsch, M; Rasheed, M; Kötter, I; Badran, M I

    2001-10-18

    Framework cavities are the largest but least explored coral reef habitat. Previous dive studies of caverns, spaces below plate corals, rubble and artificial cavities suggest that cavity-dwelling (coelobite) filter-feeders are important in the trophodynamics of reefs. Quantitative community data are lacking, however, as the bulk of the narrow crevices interlacing the reef framework are inaccessible to conventional analysis methods. Here we have developed endoscopic techniques to explore Red Sea framework crevices up to 4 m into the carbonate rock, revealing a large internal surface (2.5-7.4 m2 per projected m2 reef) dominated by encrusting filter-feeders. Sponges alone provided up to 60% of coelobite cover, outweighing epi-reefal filter-feeder biomass by two orders of magnitude. Coelobite community filtration removed more than 60% of the phytoplankton in the course of its less than 5-minute passage through the crevices, corresponding to an uptake of roughly 0.9 g carbon m-2 d-1. Mineralization of the largely allochthonous organic material is a principal source of nutrients supporting coral and algal growth. The supply of new material by coelobites may provide a key to understanding the 'coral reef paradox'-a rich ecosystem thriving in nutrient-poor water.

  17. Revealing microbial functional activities in the Red Sea sponge Stylissa carteri by metatranscriptomics.

    PubMed

    Moitinho-Silva, Lucas; Seridi, Loqmane; Ryu, Taewoo; Voolstra, Christian R; Ravasi, Timothy; Hentschel, Ute

    2014-12-01

    Sponges are important components of marine benthic environments and are associated with microbial symbionts that carry out ecologically relevant functions. Stylissa carteri is an abundant, low-microbial abundance species in the Red Sea. We aimed to achieve the functional and taxonomic characterization of the most actively expressed prokaryotic genes in S. carteri. Prokaryotic mRNA was enriched from sponge total RNA, sequenced using Illumina HiSeq technology and annotated using the metagenomics Rapid Annotation using Subsystem Technology (MG-RAST) pipeline. We detected high expression of archaeal ammonia oxidation and photosynthetic carbon fixation by members of the genus Synechococcus. Functions related to stress response and membrane transporters were among the most highly expressed by S. carteri symbionts. Unexpectedly, gene functions related to methylotrophy were highly expressed by gammaproteobacterial symbionts. The presence of seawater-derived microbes is indicated by the phylogenetic proximity of organic carbon transporters to orthologues of members from the SAR11 clade. In summary, we revealed the most expressed functions of the S. carteri-associated microbial community and linked them to the dominant taxonomic members of the microbiome. This work demonstrates the applicability of metatranscriptomics to explore poorly characterized symbiotic consortia and expands our knowledge of the ecologically relevant functions carried out by coral reef sponge symbionts.

  18. The Egyptian Red Sea coastal microbiome: A study revealing differential microbial responses to diverse anthropogenic pollutants.

    PubMed

    Mustafa, Ghada A; Abd-Elgawad, Amr; Ouf, Amged; Siam, Rania

    2016-07-01

    The Red Sea is considered one of the youngest oceanic systems, with unique physical, geochemical and biological characteristics. Tourism, industrialization, extensive fishing, oil processing and shipping are extensive sources of pollution in the Red Sea. We analyzed the geochemical characteristics and microbial community of sediments along the Egyptian coast of the Red Sea. Our sites mainly included 1) four ports used for shipping aluminum, ilmenite and phosphate; 2) a site previously reported to have suffered extensive oil spills; and 3) a site impacted by tourism. Two major datasets for the sediment of ten Red Sea coastal sites were generated; i) a chemical dataset included measurements of carbon, hydrogen, nitrogen and sulfur, metals and selected semi-volatile oil; and ii) a 16S rRNA Pyrotags bacterial metagenomic dataset. Based on the taxonomic assignments of the 16S rRNA Pyrotags to major bacterial groups, we report 30 taxa constituting an Egyptian Red Sea Coastal Microbiome. Bacteria that degrade hydrocarbons were predominant in the majority of the sites, particularly in two ports where they reached up to 76% of the total identified genera. In contrast, sulfate-reducing and sulfate-oxidizing bacteria dominated two lakes at the expense of other hydrocarbon metabolizers. Despite the reported "Egyptian Red Sea Coastal Microbiome," sites with similar anthropogenic pollutants showed unique microbial community abundances. This suggests that the abundance of a specific bacterial community is an evolutionary mechanism induced in response to selected anthropogenic pollutants.

  19. The Egyptian Red Sea coastal microbiome: A study revealing differential microbial responses to diverse anthropogenic pollutants.

    PubMed

    Mustafa, Ghada A; Abd-Elgawad, Amr; Ouf, Amged; Siam, Rania

    2016-07-01

    The Red Sea is considered one of the youngest oceanic systems, with unique physical, geochemical and biological characteristics. Tourism, industrialization, extensive fishing, oil processing and shipping are extensive sources of pollution in the Red Sea. We analyzed the geochemical characteristics and microbial community of sediments along the Egyptian coast of the Red Sea. Our sites mainly included 1) four ports used for shipping aluminum, ilmenite and phosphate; 2) a site previously reported to have suffered extensive oil spills; and 3) a site impacted by tourism. Two major datasets for the sediment of ten Red Sea coastal sites were generated; i) a chemical dataset included measurements of carbon, hydrogen, nitrogen and sulfur, metals and selected semi-volatile oil; and ii) a 16S rRNA Pyrotags bacterial metagenomic dataset. Based on the taxonomic assignments of the 16S rRNA Pyrotags to major bacterial groups, we report 30 taxa constituting an Egyptian Red Sea Coastal Microbiome. Bacteria that degrade hydrocarbons were predominant in the majority of the sites, particularly in two ports where they reached up to 76% of the total identified genera. In contrast, sulfate-reducing and sulfate-oxidizing bacteria dominated two lakes at the expense of other hydrocarbon metabolizers. Despite the reported "Egyptian Red Sea Coastal Microbiome," sites with similar anthropogenic pollutants showed unique microbial community abundances. This suggests that the abundance of a specific bacterial community is an evolutionary mechanism induced in response to selected anthropogenic pollutants. PMID:27179234

  20. High resolution mass spectrometry imaging reveals the occurrence of phenylphenalenone-type compounds in red paracytic stomata and red epidermis tissue of Musa acuminata ssp. zebrina cv. 'Rowe Red'.

    PubMed

    Hölscher, Dirk; Fuchser, Jens; Knop, Katrin; Menezes, Riya C; Buerkert, Andreas; Svatoš, Aleš; Schubert, Ulrich S; Schneider, Bernd

    2015-08-01

    The banana epidermis and in particular their stomata are conducive sites for the penetration of pathogenic fungi which can severely limit global banana production. The red pseudostem of the ornamental banana Musa acuminata ssp. zebrina cv. 'Rowe Red' was used to study the chemical constituents of the epidermal cell layer using matrix-free laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometric imaging (LDI-FT-ICR-MSI). The high resolution of this technique allowed phenylphenalenone-type compounds to be located in single plant cells. Some of these secondary metabolites were identified as constitutive compounds and found in specialized epidermal cells in banana pseudostem tissue. Especially the red paracytic stomata revealed higher signal intensities of certain phenylphenalenones than normal epidermis cells. The ease of detection of polycyclic aromatic compounds on the cellular level is discussed with regard to future investigations of plant-pathogen interactions.

  1. Parapoxvirus (PPV) of red deer reveals subclinical infection and confirms a unique species.

    PubMed

    Friederichs, Schirin; Krebs, Stefan; Blum, Helmut; Lang, Heike; Büttner, Mathias

    2015-06-01

    Parapoxvirus (PPV) infections are of worldwide importance, particularly in sheep and goat herds. Owing to the zoonotic potential of all PPV species, they are a permanent threat to human health as well. The virus is also known to affect wildlife, as reported for pinnipeds, red deer and several other wild ruminants. PPVs found in red deer have been claimed as a unique species according to certain genomic features. So far infection of wildlife has been recognized because of clinical manifestation such as inflammation, stomatitis or typical pox-like lesions in the skin or mucous membranes. Here we report the use of targeted molecular diagnostics for the presence of PPV genomes in tonsil swabs of apparently healthy red deer in the Bavarian Alps. Out of 1764 swabs, 0.79 % tested positive for PPV genome presence. From one sample, PPV was successfully isolated in cell culture. This virus became the subject of complete genome characterization using next generation sequencing and various subsidiary PCR protocols. Strikingly, about a quarter of all ORFs were found to be larger than the corresponding ORFs in the reference PPV genome sequences used for comparison. To our knowledge this is the first genome-wide analysis that confirms red deer PPV as a unique species within the genus Parapoxvirus in Europe. Persistence of PPV in Alpine red deer indicates a source for virus transmission to susceptible livestock and hunters. The findings provide a further example of wildlife animals playing an important role as an inconspicuous reservoir of zoonotic diseases.

  2. Genetic footprints reveal geographic patterns of expansion in Fennoscandian red foxes.

    PubMed

    Norén, Karin; Statham, Mark J; Ågren, Erik O; Isomursu, Marja; Flagstad, Øystein; Eide, Nina E; Berg, Thomas Bjørneboe G; Bech-Sanderhoff, Lene; Sacks, Benjamin N

    2015-09-01

    Population expansions of boreal species are among the most substantial ecological consequences of climate change, potentially transforming both structure and processes of northern ecosystems. Despite their importance, little is known about expansion dynamics of boreal species. Red foxes (Vulpes vulpes) are forecasted to become a keystone species in northern Europe, a process stemming from population expansions that began in the 19th century. To identify the relative roles of geographic and demographic factors and the sources of northern European red fox population expansion, we genotyped 21 microsatellite loci in modern and historical (1835-1941) Fennoscandian red foxes. Using Bayesian clustering and Bayesian inference of migration rates, we identified high connectivity and asymmetric migration rates across the region, consistent with source-sink dynamics, whereby more recently colonized sampling regions received immigrants from multiple sources. There were no clear clines in allele frequency or genetic diversity as would be expected from a unidirectional range expansion from south to north. Instead, migration inferences, demographic models and comparison to historical red fox genotypes suggested that the population expansion of the red fox is a consequence of dispersal from multiple sources, as well as in situ demographic growth. Together, these findings provide a rare glimpse into the anatomy of a boreal range expansion and enable informed predictions about future changes in boreal communities. PMID:26058388

  3. Genetic footprints reveal geographic patterns of expansion in Fennoscandian red foxes.

    PubMed

    Norén, Karin; Statham, Mark J; Ågren, Erik O; Isomursu, Marja; Flagstad, Øystein; Eide, Nina E; Berg, Thomas Bjørneboe G; Bech-Sanderhoff, Lene; Sacks, Benjamin N

    2015-09-01

    Population expansions of boreal species are among the most substantial ecological consequences of climate change, potentially transforming both structure and processes of northern ecosystems. Despite their importance, little is known about expansion dynamics of boreal species. Red foxes (Vulpes vulpes) are forecasted to become a keystone species in northern Europe, a process stemming from population expansions that began in the 19th century. To identify the relative roles of geographic and demographic factors and the sources of northern European red fox population expansion, we genotyped 21 microsatellite loci in modern and historical (1835-1941) Fennoscandian red foxes. Using Bayesian clustering and Bayesian inference of migration rates, we identified high connectivity and asymmetric migration rates across the region, consistent with source-sink dynamics, whereby more recently colonized sampling regions received immigrants from multiple sources. There were no clear clines in allele frequency or genetic diversity as would be expected from a unidirectional range expansion from south to north. Instead, migration inferences, demographic models and comparison to historical red fox genotypes suggested that the population expansion of the red fox is a consequence of dispersal from multiple sources, as well as in situ demographic growth. Together, these findings provide a rare glimpse into the anatomy of a boreal range expansion and enable informed predictions about future changes in boreal communities.

  4. Population differentiation in the red-legged kittiwake (Rissa brevirostris) as revealed by mitochondrial DNA

    USGS Publications Warehouse

    Patirana, A.; Hatch, Shyla A.; Friesen, V.L.

    2002-01-01

    Population decline in red-legged kittiwakes (Rissa brevirostris) over recent decades has necessitated the collection of information on the distribution of genetic variation within and among colonies for implementation of suitable management policies. Here we present a preliminary study of the extent of genetic structuring and gene flow among the three principal breeding locations of red-legged kittiwakes using the hypervariable Domain I of the mitochondrial control region. Genetic variation was high relative to other species of seabirds, and was similar among locations. Analysis of molecular variance indicated that population genetic structure was statistically significant, and nested clade analysis suggested that kittiwakes breeding on Bering Island maybe genetically isolated from those elsewhere. However, phylogeographic structure was weak. Although this analysis involved only a single locus and a small number of samples, it suggests that red-legged kittiwakes probably constitute a single evolutionary significant unit; the possibility that they constitute two management units requires further investigation.

  5. Effect of size, seasoning and toasting in the volatile compounds in toasted oak wood and in a red wine treated with them.

    PubMed

    Fernández de Simón, B; Cadahía, E; del Alamo, M; Nevares, I

    2010-02-15

    The increasing demand for wood for barrel-making in addition to the rapid extension of alternative aging system, have led to looking into the possibility of utilizing Spanish oak. Quercus pyrenaica is the species that predominates in Spain, and the chemical composition of its heartwood (ellagitannins, low molecular weight phenolic and volatile compounds) and its incidence in characteristics of wine are similar to that of other species that are of recognized oenological quality for barrel-making, showing only quantitative differences with respect to French (Quercus petraea) and American (Quercus alba) species. However, at present, the quantity of good quality wood that we can obtain from the Q. pyrenaica Spanish forest is limited. Hence, in the short term, and considering the high chemical oenological quality of Q. pyrenaica wood, we propose the utilizing of chips, segments, staves, and other oak alternatives for wine aging, which would be obtained from wooden remnants from barrel-making as well as from trees with small diameters or physical defects which would normally be inappropriate for cooperage. With regards to the latter idea, studies on special chip-making processes, and other oak wood pieces are being carried out, especially focused on reducing seasoning time, and to toasting optimization as a function of wood piece size, in addition to its behaviour when incorporated into the different alternative aging systems. We present in this study the effect of seasoning way (traditional or unconventional) on volatile composition of Q. pyrenaica chips and staves at three toasting levels (light, medium and heavy), and the evolution of the wood-released aromatic composition of a Spanish artificially aged wine, using these alternative products. The wines showed in general small differences in their oak-derived characteristics, which were more related to the wood piece size and the toasting intensity than to the seasoning way, and they could be linked with the

  6. Transcriptome Analysis Reveals that Red and Blue Light Regulate Growth and Phytohormone Metabolism in Norway Spruce [Picea abies (L.) Karst].

    PubMed

    OuYang, Fangqun; Mao, Jian-Feng; Wang, Junhui; Zhang, Shougong; Li, Yue

    2015-01-01

    The mechanisms by which different light spectra regulate plant shoot elongation vary, and phytohormones respond differently to such spectrum-associated regulatory effects. Light supplementation can effectively control seedling growth in Norway spruce. However, knowledge of the effective spectrum for promoting growth and phytohormone metabolism in this species is lacking. In this study, 3-year-old Norway spruce clones were illuminated for 12 h after sunset under blue or red light-emitting diode (LED) light for 90 d, and stem increments and other growth traits were determined. Endogenous hormone levels and transcriptome differences in the current needles were assessed to identify genes related to the red and blue light regulatory responses. The results showed that the stem increment and gibberellin (GA) levels of the seedlings illuminated by red light were 8.6% and 29.0% higher, respectively, than those of the seedlings illuminated by blue light. The indoleacetic acid (IAA) level of the seedlings illuminated by red light was 54.6% lower than that of the seedlings illuminated by blue light, and there were no significant differences in abscisic acid (ABA) or zeatin riboside [ZR] between the two groups of seedlings. The transcriptome results revealed 58,736,166 and 60,555,192 clean reads for the blue-light- and red-light-illuminated samples, respectively. Illumina sequencing revealed 21,923 unigenes, and 2744 (approximately 93.8%) out of 2926 differentially expressed genes (DEGs) were found to be upregulated under blue light. The main KEGG classifications of the DEGs were metabolic pathway (29%), biosynthesis of secondary metabolites (20.49%) and hormone signal transduction (8.39%). With regard to hormone signal transduction, AUXIN-RESISTANT1 (AUX1), AUX/IAA genes, auxin-inducible genes, and early auxin-responsive genes [(auxin response factor (ARF) and small auxin-up RNA (SAUR)] were all upregulated under blue light compared with red light, which might have yielded the

  7. Transcriptome Analysis Reveals that Red and Blue Light Regulate Growth and Phytohormone Metabolism in Norway Spruce [Picea abies (L.) Karst.

    PubMed Central

    OuYang, Fangqun; Mao, Jian-Feng; Wang, Junhui; Zhang, Shougong; Li, Yue

    2015-01-01

    The mechanisms by which different light spectra regulate plant shoot elongation vary, and phytohormones respond differently to such spectrum-associated regulatory effects. Light supplementation can effectively control seedling growth in Norway spruce. However, knowledge of the effective spectrum for promoting growth and phytohormone metabolism in this species is lacking. In this study, 3-year-old Norway spruce clones were illuminated for 12 h after sunset under blue or red light-emitting diode (LED) light for 90 d, and stem increments and other growth traits were determined. Endogenous hormone levels and transcriptome differences in the current needles were assessed to identify genes related to the red and blue light regulatory responses. The results showed that the stem increment and gibberellin (GA) levels of the seedlings illuminated by red light were 8.6% and 29.0% higher, respectively, than those of the seedlings illuminated by blue light. The indoleacetic acid (IAA) level of the seedlings illuminated by red light was 54.6% lower than that of the seedlings illuminated by blue light, and there were no significant differences in abscisic acid (ABA) or zeatin riboside [ZR] between the two groups of seedlings. The transcriptome results revealed 58,736,166 and 60,555,192 clean reads for the blue-light- and red-light-illuminated samples, respectively. Illumina sequencing revealed 21,923 unigenes, and 2744 (approximately 93.8%) out of 2926 differentially expressed genes (DEGs) were found to be upregulated under blue light. The main KEGG classifications of the DEGs were metabolic pathway (29%), biosynthesis of secondary metabolites (20.49%) and hormone signal transduction (8.39%). With regard to hormone signal transduction, AUXIN-RESISTANT1 (AUX1), AUX/IAA genes, auxin-inducible genes, and early auxin-responsive genes [(auxin response factor (ARF) and small auxin-up RNA (SAUR)] were all upregulated under blue light compared with red light, which might have yielded the

  8. Transcriptome Analysis Reveals that Red and Blue Light Regulate Growth and Phytohormone Metabolism in Norway Spruce [Picea abies (L.) Karst].

    PubMed

    OuYang, Fangqun; Mao, Jian-Feng; Wang, Junhui; Zhang, Shougong; Li, Yue

    2015-01-01

    The mechanisms by which different light spectra regulate plant shoot elongation vary, and phytohormones respond differently to such spectrum-associated regulatory effects. Light supplementation can effectively control seedling growth in Norway spruce. However, knowledge of the effective spectrum for promoting growth and phytohormone metabolism in this species is lacking. In this study, 3-year-old Norway spruce clones were illuminated for 12 h after sunset under blue or red light-emitting diode (LED) light for 90 d, and stem increments and other growth traits were determined. Endogenous hormone levels and transcriptome differences in the current needles were assessed to identify genes related to the red and blue light regulatory responses. The results showed that the stem increment and gibberellin (GA) levels of the seedlings illuminated by red light were 8.6% and 29.0% higher, respectively, than those of the seedlings illuminated by blue light. The indoleacetic acid (IAA) level of the seedlings illuminated by red light was 54.6% lower than that of the seedlings illuminated by blue light, and there were no significant differences in abscisic acid (ABA) or zeatin riboside [ZR] between the two groups of seedlings. The transcriptome results revealed 58,736,166 and 60,555,192 clean reads for the blue-light- and red-light-illuminated samples, respectively. Illumina sequencing revealed 21,923 unigenes, and 2744 (approximately 93.8%) out of 2926 differentially expressed genes (DEGs) were found to be upregulated under blue light. The main KEGG classifications of the DEGs were metabolic pathway (29%), biosynthesis of secondary metabolites (20.49%) and hormone signal transduction (8.39%). With regard to hormone signal transduction, AUXIN-RESISTANT1 (AUX1), AUX/IAA genes, auxin-inducible genes, and early auxin-responsive genes [(auxin response factor (ARF) and small auxin-up RNA (SAUR)] were all upregulated under blue light compared with red light, which might have yielded the

  9. Asteroseismology can reveal strong internal magnetic fields in red giant stars.

    PubMed

    Fuller, Jim; Cantiello, Matteo; Stello, Dennis; Garcia, Rafael A; Bildsten, Lars

    2015-10-23

    Internal stellar magnetic fields are inaccessible to direct observations, and little is known about their amplitude, geometry, and evolution. We demonstrate that strong magnetic fields in the cores of red giant stars can be identified with asteroseismology. The fields can manifest themselves via depressed dipole stellar oscillation modes, arising from a magnetic greenhouse effect that scatters and traps oscillation-mode energy within the core of the star. The Kepler satellite has observed a few dozen red giants with depressed dipole modes, which we interpret as stars with strongly magnetized cores. We find that field strengths larger than ~10(5) gauss may produce the observed depression, and in one case we infer a minimum core field strength of ≈10(7) gauss. PMID:26494754

  10. Asteroseismology can reveal strong internal magnetic fields in red giant stars.

    PubMed

    Fuller, Jim; Cantiello, Matteo; Stello, Dennis; Garcia, Rafael A; Bildsten, Lars

    2015-10-23

    Internal stellar magnetic fields are inaccessible to direct observations, and little is known about their amplitude, geometry, and evolution. We demonstrate that strong magnetic fields in the cores of red giant stars can be identified with asteroseismology. The fields can manifest themselves via depressed dipole stellar oscillation modes, arising from a magnetic greenhouse effect that scatters and traps oscillation-mode energy within the core of the star. The Kepler satellite has observed a few dozen red giants with depressed dipole modes, which we interpret as stars with strongly magnetized cores. We find that field strengths larger than ~10(5) gauss may produce the observed depression, and in one case we infer a minimum core field strength of ≈10(7) gauss.

  11. Fast core rotation in red-giant stars as revealed by gravity-dominated mixed modes.

    PubMed

    Beck, Paul G; Montalban, Josefina; Kallinger, Thomas; De Ridder, Joris; Aerts, Conny; García, Rafael A; Hekker, Saskia; Dupret, Marc-Antoine; Mosser, Benoit; Eggenberger, Patrick; Stello, Dennis; Elsworth, Yvonne; Frandsen, Søren; Carrier, Fabien; Hillen, Michel; Gruberbauer, Michael; Christensen-Dalsgaard, Jørgen; Miglio, Andrea; Valentini, Marica; Bedding, Timothy R; Kjeldsen, Hans; Girouard, Forrest R; Hall, Jennifer R; Ibrahim, Khadeejah A

    2011-12-07

    When the core hydrogen is exhausted during stellar evolution, the central region of a star contracts and the outer envelope expands and cools, giving rise to a red giant. Convection takes place over much of the star's radius. Conservation of angular momentum requires that the cores of these stars rotate faster than their envelopes; indirect evidence supports this. Information about the angular-momentum distribution is inaccessible to direct observations, but it can be extracted from the effect of rotation on oscillation modes that probe the stellar interior. Here we report an increasing rotation rate from the surface of the star to the stellar core in the interiors of red giants, obtained using the rotational frequency splitting of recently detected 'mixed modes'. By comparison with theoretical stellar models, we conclude that the core must rotate at least ten times faster than the surface. This observational result confirms the theoretical prediction of a steep gradient in the rotation profile towards the deep stellar interior.

  12. Equilibrium physics breakdown reveals the active nature of red blood cell flickering

    NASA Astrophysics Data System (ADS)

    Turlier, Herve; Fedosov, Dmitry; Auth, Thorsten; Gov, Nir S.; Sykes, Cecile; Joanny, Jean-Francois; Gompper, Gerhard; Betz, Timo

    2015-03-01

    Red blood cell membrane flickering stimulated an abundant biological, biophysical and biochemical literature over the past 50 years. While the phenomenon has been interpreted as thermal fluctuations of the cell membrane, recent results suggest the involvement of metabolic processes. However, to date there is no direct and conclusive evidence that an active force drives membrane flickering. By comparing membrane undulations and active microrheology measurements on single human erythrocytes, we show that flickering is partly driven by an active metabolic process, as it does not satisfy the equilibrium fluctuation-dissipation relation on timescales slower than 100ms. Analytical and numerical models of the red blood cell reproduce experimental results. The analytical model assumes that membrane activity results from reversible binding of the elastic spectrin network to the lipid bilayer and predicts active fluctuations to increase with local curvature and extensional prestress in the cytoskeleton. Our mean-field calculation shows that the strength and kinetics of the binding activity regulates thereupon both passive and active mechanical properties of the red blood cell. Numerical simulations explore other possible origins of active forces on the membrane and predict coherent timescales for the molecular underlying metabolic processes.

  13. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation.

    PubMed

    Alvarez-Dominguez, Juan R; Hu, Wenqian; Yuan, Bingbing; Shi, Jiahai; Park, Staphany S; Gromatzky, Austin A; van Oudenaarden, Alexander; Lodish, Harvey F

    2014-01-23

    Erythropoiesis is regulated at multiple levels to ensure the proper generation of mature red cells under multiple physiological conditions. To probe the contribution of long noncoding RNAs (lncRNAs) to this process, we examined >1 billion RNA-seq reads of polyadenylated and nonpolyadenylated RNA from differentiating mouse fetal liver red blood cells and identified 655 lncRNA genes including not only intergenic, antisense, and intronic but also pseudogene and enhancer loci. More than 100 of these genes are previously unrecognized and highly erythroid specific. By integrating genome-wide surveys of chromatin states, transcription factor occupancy, and tissue expression patterns, we identify multiple lncRNAs that are dynamically expressed during erythropoiesis, show epigenetic regulation, and are targeted by key erythroid transcription factors GATA1, TAL1, or KLF1. We focus on 12 such candidates and find that they are nuclear-localized and exhibit complex developmental expression patterns. Depleting them severely impaired erythrocyte maturation, inhibiting cell size reduction and subsequent enucleation. One of them, alncRNA-EC7, is transcribed from an enhancer and is specifically needed for activation of the neighboring gene encoding BAND 3. Our study provides an annotated catalog of erythroid lncRNAs, readily available through an online resource, and shows that diverse types of lncRNAs participate in the regulatory circuitry underlying erythropoiesis.

  14. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation

    PubMed Central

    Alvarez-Dominguez, Juan R.; Yuan, Bingbing; Shi, Jiahai; Park, Staphany S.; Gromatzky, Austin A.; van Oudenaarden, Alexander

    2014-01-01

    Erythropoiesis is regulated at multiple levels to ensure the proper generation of mature red cells under multiple physiological conditions. To probe the contribution of long noncoding RNAs (lncRNAs) to this process, we examined >1 billion RNA-seq reads of polyadenylated and nonpolyadenylated RNA from differentiating mouse fetal liver red blood cells and identified 655 lncRNA genes including not only intergenic, antisense, and intronic but also pseudogene and enhancer loci. More than 100 of these genes are previously unrecognized and highly erythroid specific. By integrating genome-wide surveys of chromatin states, transcription factor occupancy, and tissue expression patterns, we identify multiple lncRNAs that are dynamically expressed during erythropoiesis, show epigenetic regulation, and are targeted by key erythroid transcription factors GATA1, TAL1, or KLF1. We focus on 12 such candidates and find that they are nuclear-localized and exhibit complex developmental expression patterns. Depleting them severely impaired erythrocyte maturation, inhibiting cell size reduction and subsequent enucleation. One of them, alncRNA-EC7, is transcribed from an enhancer and is specifically needed for activation of the neighboring gene encoding BAND 3. Our study provides an annotated catalog of erythroid lncRNAs, readily available through an online resource, and shows that diverse types of lncRNAs participate in the regulatory circuitry underlying erythropoiesis. PMID:24200680

  15. Fast core rotation in red-giant stars as revealed by gravity-dominated mixed modes.

    PubMed

    Beck, Paul G; Montalban, Josefina; Kallinger, Thomas; De Ridder, Joris; Aerts, Conny; García, Rafael A; Hekker, Saskia; Dupret, Marc-Antoine; Mosser, Benoit; Eggenberger, Patrick; Stello, Dennis; Elsworth, Yvonne; Frandsen, Søren; Carrier, Fabien; Hillen, Michel; Gruberbauer, Michael; Christensen-Dalsgaard, Jørgen; Miglio, Andrea; Valentini, Marica; Bedding, Timothy R; Kjeldsen, Hans; Girouard, Forrest R; Hall, Jennifer R; Ibrahim, Khadeejah A

    2012-01-01

    When the core hydrogen is exhausted during stellar evolution, the central region of a star contracts and the outer envelope expands and cools, giving rise to a red giant. Convection takes place over much of the star's radius. Conservation of angular momentum requires that the cores of these stars rotate faster than their envelopes; indirect evidence supports this. Information about the angular-momentum distribution is inaccessible to direct observations, but it can be extracted from the effect of rotation on oscillation modes that probe the stellar interior. Here we report an increasing rotation rate from the surface of the star to the stellar core in the interiors of red giants, obtained using the rotational frequency splitting of recently detected 'mixed modes'. By comparison with theoretical stellar models, we conclude that the core must rotate at least ten times faster than the surface. This observational result confirms the theoretical prediction of a steep gradient in the rotation profile towards the deep stellar interior. PMID:22158105

  16. THE NATURE OF EXTREMELY RED H - [4.5] > 4 GALAXIES REVEALED WITH SEDS AND CANDELS

    SciTech Connect

    Caputi, K. I.; Dunlop, J. S.; McLure, R. J.; Cirasuolo, M.; Huang, J.-S.; Fazio, G. G.; Ashby, M. L. N.; Castellano, M.; Fontana, A.; Almaini, O.; Bell, E. F.; Dickinson, M.; Donley, J. L.; Ferguson, H. C.; Grogin, N. A.; Koekemoer, A. M.; Faber, S. M.; Kocevski, D. D.; Koo, D. C.; and others

    2012-05-01

    We have analyzed a sample of 25 extremely red H - [4.5] > 4 galaxies, selected using 4.5 {mu}m data from the Spitzer SEDS survey and deep H-band data from the Hubble Space Telescope CANDELS survey, over {approx}180 arcmin{sup 2} of the UKIDSS Ultra-Deep Survey field. Our aim is to investigate the nature of this rare population of mid-infrared (mid-IR) sources that display such extreme near-to-mid-IR colors. Using up to 17-band photometry (U through 8.0 {mu}m), we have studied in detail their spectral energy distributions, including possible degeneracies in the photometric redshift/internal extinction (z{sub phot}-A{sub V} ) plane. Our sample appears to include sources of very different nature. Between 45% and 75% of them are dust-obscured, massive galaxies at 3 < z{sub phot} < 5. All of the 24 {mu}m detected sources in our sample are in this category. Two of these have S(24 {mu}m)>300 {mu}Jy, which at 3 < z{sub phot} < 5 suggests that they probably host a dust-obscured active galactic nucleus. Our sample also contains four highly obscured (A{sub V} > 5) sources at z{sub phot} < 1. Finally, we analyze in detail two z{sub phot} {approx} 6 galaxy candidates, and discuss their plausibility and implications. Overall, our red galaxy sample contains the tip of the iceberg of a larger population of z > 3 galaxies to be discovered with the future James Webb Space Telescope.

  17. Comprehensive Red List assessment reveals exceptionally high extinction risk to Madagascar palms.

    PubMed

    Rakotoarinivo, Mijoro; Dransfield, John; Bachman, Steven P; Moat, Justin; Baker, William J

    2014-01-01

    The establishment of baseline IUCN Red List assessments for plants is a crucial step in conservation planning. Nowhere is this more important than in biodiversity hotspots that are subject to significant anthropogenic pressures, such as Madagascar. Here, all Madagascar palm species are assessed using the IUCN Red List categories and criteria, version 3.1. Our results indicate that 83% of the 192 endemic species are threatened, nearly four times the proportion estimated for plants globally and exceeding estimates for all other comprehensively evaluated plant groups in Madagascar. Compared with a previous assessment in 1995, the number of Endangered and Critically Endangered species has substantially increased, due to the discovery of 28 new species since 1995, most of which are highly threatened. The conservation status of most species included in both the 1995 and the current assessments has not changed. Where change occurred, more species have moved to lower threat categories than to higher categories, because of improved knowledge of species and their distributions, rather than a decrease in extinction risk. However, some cases of genuine deterioration in conservation status were also identified. Palms in Madagascar are primarily threatened by habitat loss due to agriculture and biological resource use through direct exploitation or collateral damage. The recent extension of Madagascar's protected area network is highly beneficial for palms, substantially increasing the number of threatened species populations included within reserves. Notably, three of the eight most important protected areas for palms are newly designated. However, 28 threatened and data deficient species are not protected by the expanded network, including some Critically Endangered species. Moreover, many species occurring in protected areas are still threatened, indicating that threatening processes persist even in reserves. Definitive implementation of the new protected areas combined with

  18. Comprehensive Red List Assessment Reveals Exceptionally High Extinction Risk to Madagascar Palms

    PubMed Central

    Rakotoarinivo, Mijoro; Dransfield, John; Bachman, Steven P.; Moat, Justin; Baker, William J.

    2014-01-01

    The establishment of baseline IUCN Red List assessments for plants is a crucial step in conservation planning. Nowhere is this more important than in biodiversity hotspots that are subject to significant anthropogenic pressures, such as Madagascar. Here, all Madagascar palm species are assessed using the IUCN Red List categories and criteria, version 3.1. Our results indicate that 83% of the 192 endemic species are threatened, nearly four times the proportion estimated for plants globally and exceeding estimates for all other comprehensively evaluated plant groups in Madagascar. Compared with a previous assessment in 1995, the number of Endangered and Critically Endangered species has substantially increased, due to the discovery of 28 new species since 1995, most of which are highly threatened. The conservation status of most species included in both the 1995 and the current assessments has not changed. Where change occurred, more species have moved to lower threat categories than to higher categories, because of improved knowledge of species and their distributions, rather than a decrease in extinction risk. However, some cases of genuine deterioration in conservation status were also identified. Palms in Madagascar are primarily threatened by habitat loss due to agriculture and biological resource use through direct exploitation or collateral damage. The recent extension of Madagascar’s protected area network is highly beneficial for palms, substantially increasing the number of threatened species populations included within reserves. Notably, three of the eight most important protected areas for palms are newly designated. However, 28 threatened and data deficient species are not protected by the expanded network, including some Critically Endangered species. Moreover, many species occurring in protected areas are still threatened, indicating that threatening processes persist even in reserves. Definitive implementation of the new protected areas combined

  19. Systematic trend of water vapour absorption in red giant atmospheres revealed by high resolution TEXES 12 μm spectra

    NASA Astrophysics Data System (ADS)

    Ryde, N.; Lambert, J.; Farzone, M.; Richter, M. J.; Josselin, E.; Harper, G. M.; Eriksson, K.; Greathouse, T. K.

    2015-01-01

    line-forming regions, are several hundred Kelvin lower than expected from a classical photospheric model. Conclusions: All stars in our sample show several photospheric features in their 12 μm spectra, which can be modelled with a classical model photosphere. However, in all stars showing water-vapour lines (stars cooler than ~4300 K), the water lines are found to be much deeper than expected. The line ratios of these pure-rotational lines reveal low excitation temperatures. This could either be due to lower temperatures than expected in the outer regions of the photospheres caused by for example extra cooling, or due to non-LTE level populations, affecting the source function and line opacities, but this needs further investigation. We have demonstrated that these diagnostically interesting water lines are a general feature of red giants across spectral types, and we argue for a general explanation of their formation rather than explanations requiring specific properties, such as dust. Since the water lines are neither weak (filled in by emission) nor do they appear in emission, as predicted by LTE MOLsphere models in their simplest forms, the evidence of the existence of such large optically-thick, molecular spheres enshrouding the stars is weakened. It is still a challenge to find a unifying picture of the outer regions of the atmospheres of red giants, but we have presented new empirical evidence that needs to be taken into account and explained in any model of these regions. Table 4 is available in electronic form at http://www.aanda.org

  20. Equilibrium physics breakdown reveals the active nature of red blood cell flickering

    NASA Astrophysics Data System (ADS)

    Turlier, H.; Fedosov, D. A.; Audoly, B.; Auth, T.; Gov, N. S.; Sykes, C.; Joanny, J.-F.; Gompper, G.; Betz, T.

    2016-05-01

    Red blood cells, or erythrocytes, are seen to flicker under optical microscopy, a phenomenon initially described as thermal fluctuations of the cell membrane. But recent studies have suggested the involvement of non-equilibrium processes, without definitively ruling out equilibrium interpretations. Using active and passive microrheology to directly compare the membrane response and fluctuations on single erythrocytes, we report here a violation of the fluctuation-dissipation relation, which is a direct demonstration of the non-equilibrium nature of flickering. With an analytical model of the composite erythrocyte membrane and realistic stochastic simulations, we show that several molecular mechanisms may explain the active fluctuations, and we predict their kinetics. We demonstrate that tangential metabolic activity in the network formed by spectrin, a cytoskeletal protein, can generate curvature-mediated active membrane motions. We also show that other active membrane processes represented by direct normal force dipoles may explain the observed membrane activity. Our findings provide solid experimental and theoretical frameworks for future investigations of the origin and function of active motion in cells.

  1. Admixed origin of the Kayah (Red Karen) in Northern Thailand revealed by biparental and paternal markers.

    PubMed

    Kutanan, Wibhu; Srikummool, Metawee; Pittayaporn, Pittayawat; Seielstad, Mark; Kangwanpong, Daoroong; Kumar, Vikrant; Prombanchachai, Thanawut; Chantawannakul, Panuwan

    2015-03-01

    This study analyzes the autosomal short tandem repeats (STRs) variation and the presence of Y chromosomal haplogroups from 44 individuals of the Kayah or Red Karen (KA) in Northern Thailand. The results based on autosomal STRs indicated that the KA exhibited closer genetic relatedness to populations from adjacent regions in Southeast Asia (SEA) than populations from Northeast Asia (NEA) and Tibet. Moreover, an admixed origin of the KA forming three population groups was observed: NEA, Southern China, and Northern Thailand. The NEA populations made a minor genetic contribution to the KA, while the rest came from populations speaking Sino-Tibetan (ST) languages from Southern China and Tai-Kadai (TK) speaking groups from Northern Thailand. The presence of six paternal haplogroups, composed of dual haplogroups prevalent in NEA (NO, N, and D1) and SEA (O2 and O3) as well as the intermediate genetic position of the KA between the SEA and NEA also indicated an admixed origin of male KA lineages. Our genetic results thus agree with findings in linguistics that Karenic languages are ST languages that became heavily influenced by TK during their southward spread. A result of the Mongol invasions during the 13th century A.D. is one possible explanation for genetic contribution of NEA to the KA.

  2. Extracellular DNA amplicon sequencing reveals high levels of benthic eukaryotic diversity in the central Red Sea.

    PubMed

    Pearman, John K; Irigoien, Xabier; Carvalho, Susana

    2016-04-01

    The present study aims to characterize the benthic eukaryotic biodiversity patterns at a coarse taxonomic level in three areas of the central Red Sea (a lagoon, an offshore area in Thuwal and a shallow coastal area near Jeddah) based on extracellular DNA. High-throughput amplicon sequencing targeting the V9 region of the 18S rRNA gene was undertaken for 32 sediment samples. High levels of alpha-diversity were detected with 16,089 operational taxonomic units (OTUs) being identified. The majority of the OTUs were assigned to Metazoa (29.2%), Alveolata (22.4%) and Stramenopiles (17.8%). Stramenopiles (Diatomea) and Alveolata (Ciliophora) were frequent in a lagoon and in shallower coastal stations, whereas metazoans (Arthropoda: Maxillopoda) were dominant in deeper offshore stations. Only 24.6% of total OTUs were shared among all areas. Beta-diversity was generally lower between the lagoon and Jeddah (nearshore) than between either of those and the offshore area, suggesting a nearshore-offshore biodiversity gradient. The current approach allowed for a broad-range of benthic eukaryotic biodiversity to be analysed with significantly less labour than would be required by other traditional taxonomic approaches. Our findings suggest that next generation sequencing techniques have the potential to provide a fast and standardised screening of benthic biodiversity at large spatial and temporal scales.

  3. Red blood cells polarize green laser light revealing hemoglobin's enhanced non-fundamental Raman modes.

    PubMed

    Marzec, Katarzyna M; Perez-Guaita, David; de Veij, Marleen; McNaughton, Don; Baranska, Malgorzata; Dixon, Matthew W A; Tilley, Leann; Wood, Bayden R

    2014-12-15

    In general, the first overtone modes produce weak bands that appear at approximately twice the wavenumber value of the fundamental transitions in vibrational spectra. Here, we report the existence of a series of enhanced non-fundamental bands in resonance Raman (RR) spectra recorded for hemoglobin (Hb) inside the highly concentrated heme environment of the red blood cell (RBC) by exciting with a 514.5 nm laser line. Such bands are most intense when detecting parallel-polarized light. The enhancement is explained through excitonic theory invoking a type C scattering mechanism and bands have been assigned to overtone and combination bands based on symmetry arguments and polarization measurements. By using malaria diagnosis as an example, we demonstrate that combining the non-fundamental and fundamental regions of the RR spectrum improves the sensitivity and diagnostic capability of the technique. The discovery will have considerable implications for the ongoing development of Raman spectroscopy for blood disease diagnoses and monitoring heme perturbation in response to environmental stimuli.

  4. Distinct protein classes in human red cell proteome revealed by similarity of phylogenetic profiles.

    PubMed

    Szczesny, Paweł; Mykowiecka, Agnieszka; Pawłowski, Krzysztof; Grynberg, Marcin

    2013-01-01

    The minimal set of proteins necessary to maintain a vertebrate cell forms an interesting core of cellular machinery. The known proteome of human red blood cell consists of about 1400 proteins. We treated this protein complement of one of the simplest human cells as a model and asked the questions on its function and origins. The proteome was mapped onto phylogenetic profiles, i.e. vectors of species possessing homologues of human proteins. A novel clustering approach was devised, utilising similarity in the phylogenetic spread of homologues as distance measure. The clustering based on phylogenetic profiles yielded several distinct protein classes differing in phylogenetic taxonomic spread, presumed evolutionary history and functional properties. Notably, small clusters of proteins common to vertebrates or Metazoa and other multicellular eukaryotes involve biological functions specific to multicellular organisms, such as apoptosis or cell-cell signaling, respectively. Also, a eukaryote-specific cluster is identified, featuring GTP-ase signalling and ubiquitination. Another cluster, made up of proteins found in most organisms, including bacteria and archaea, involves basic molecular functions such as oxidation-reduction and glycolysis. Approximately one third of erythrocyte proteins do not fall in any of the clusters, reflecting the complexity of protein evolution in comparison to our simple model. Basically, the clustering obtained divides the proteome into old and new parts, the former originating from bacterial ancestors, the latter from inventions within multicellular eukaryotes. Thus, the model human cell proteome appears to be made up of protein sets distinct in their history and biological roles. The current work shows that phylogenetic profiles concept allows protein clustering in a way relevant both to biological function and evolutionary history. PMID:23349899

  5. Spatial and Species Variations in Bacterial Communities Associated with Corals from the Red Sea as Revealed by Pyrosequencing

    PubMed Central

    Lee, On On; Yang, Jiangke; Bougouffa, Salim; Wang, Yong; Batang, Zenon; Tian, Renmao; Al-Suwailem, Abdulaziz

    2012-01-01

    Microbial associations with corals are common and are most likely symbiotic, although their diversity and relationships with environmental factors and host species remain unclear. In this study, we adopted a 16S rRNA gene tag-pyrosequencing technique to investigate the bacterial communities associated with three stony Scleractinea and two soft Octocorallia corals from three locations in the Red Sea. Our results revealed highly diverse bacterial communities in the Red Sea corals, with more than 600 ribotypes detected and up to 1,000 species estimated from a single coral species. Altogether, 21 bacterial phyla were recovered from the corals, of which Gammaproteobacteria was the most dominant group, and Chloroflexi, Chlamydiae, and the candidate phylum WS3 were reported in corals for the first time. The associated bacterial communities varied greatly with location, where environmental conditions differed significantly. Corals from disturbed areas appeared to share more similar bacterial communities, but larger variations in community structures were observed between different coral species from pristine waters. Ordination methods identified salinity and depth as the most influential parameters affecting the abundance of Vibrio, Pseudoalteromonas, Serratia, Stenotrophomonas, Pseudomonas, and Achromobacter in the corals. On the other hand, bacteria such as Chloracidobacterium and Endozoicomonas were more sensitive to the coral species, suggesting that the host species type may be influential in the associated bacterial community, as well. The combined influences of the coral host and environmental factors on the associated microbial communities are discussed. This study represents the first comparative study using tag-pyrosequencing technology to investigate the bacterial communities in Red Sea corals. PMID:22865078

  6. Diatom Phytochromes Reveal the Existence of Far-Red-Light-Based Sensing in the Ocean[OPEN

    PubMed Central

    Enomoto, Gen; Bouly, Jean-Pierre; Thaler, Michael; Malviya, Shruti; Bernardes, Juliana Silva; Rappaport, Fabrice; Gentili, Bernard; Huysman, Marie J.J.; Carbone, Alessandra; Bowler, Chris; Ikeuchi, Masahiko; Falciatore, Angela

    2016-01-01

    The absorption of visible light in aquatic environments has led to the common assumption that aquatic organisms sense and adapt to penetrative blue/green light wavelengths but show little or no response to the more attenuated red/far-red wavelengths. Here, we show that two marine diatom species, Phaeodactylum tricornutum and Thalassiosira pseudonana, possess a bona fide red/far-red light sensing phytochrome (DPH) that uses biliverdin as a chromophore and displays accentuated red-shifted absorbance peaks compared with other characterized plant and algal phytochromes. Exposure to both red and far-red light causes changes in gene expression in P. tricornutum, and the responses to far-red light disappear in DPH knockout cells, demonstrating that P. tricornutum DPH mediates far-red light signaling. The identification of DPH genes in diverse diatom species widely distributed along the water column further emphasizes the ecological significance of far-red light sensing, raising questions about the sources of far-red light. Our analyses indicate that, although far-red wavelengths from sunlight are only detectable at the ocean surface, chlorophyll fluorescence and Raman scattering can generate red/far-red photons in deeper layers. This study opens up novel perspectives on phytochrome-mediated far-red light signaling in the ocean and on the light sensing and adaptive capabilities of marine phototrophs. PMID:26941092

  7. Analysis of genetic diversity in red clover (Trifolium pratense L.) breeding populations as revealed by RAPD genetic markers.

    PubMed

    Ulloa, Odeth; Ortega, Fernando; Campos, Hugo

    2003-08-01

    Red clover is an important forage legume species for temperate regions and very little is known about the genetic organization of its breeding populations. We used random amplified polymorphic DNA (RAPD) genetic markers to address the genetic diversity and the distribution of variation in 20 breeding populations and cultivars from Chile, Argentina, Uruguay, and Switzerland. Genetic distances were calculated for all possible pairwise combinations. A high level of polymorphism was found and the proportion of polymorphic loci across populations was 74.2%. A population derived from a non-certified seedlot displayed a higher proportion of polymorphic loci than its respective certified seedlot. Gene diversity values and population genetics parameters suggest that the populations analyzed are diverse. An analysis of molecular variance (AMOVA) revealed that the largest proportion of variation (80.4%) resides at the within population level. RAPD markers are a useful tool for red clover breeding programs. A dendrogram based on genetic distances divided the breeding populations analyzed into three distinct groups. The amount and partition of diversity observed can be of value in identifying the populations that parents of synthetic cultivars are derived from and to exploit the variation available in the populations analyzed. PMID:12897860

  8. Metagenomic study of red biofilms from Diamante Lake reveals ancient arsenic bioenergetics in haloarchaea.

    PubMed

    Rascovan, Nicolás; Maldonado, Javier; Vazquez, Martín P; Eugenia Farías, María

    2016-02-01

    Arsenic metabolism is proposed to be an ancient mechanism in microbial life. Different bacteria and archaea use detoxification processes to grow under high arsenic concentration. Some of them are also able to use arsenic as a bioenergetic substrate in either anaerobic arsenate respiration or chemolithotrophic growth on arsenite. However, among the archaea, bioenergetic arsenic metabolism has only been found in the Crenarchaeota phylum. Here we report the discovery of haloarchaea (Euryarchaeota phylum) biofilms forming under the extreme environmental conditions such as high salinity, pH and arsenic concentration at 4589 m above sea level inside a volcano crater in Diamante Lake, Argentina. Metagenomic analyses revealed a surprisingly high abundance of genes used for arsenite oxidation (aioBA) and respiratory arsenate reduction (arrCBA) suggesting that these haloarchaea use arsenic compounds as bioenergetics substrates. We showed that several haloarchaea species, not only from this study, have all genes required for these bioenergetic processes. The phylogenetic analysis of aioA showed that haloarchaea sequences cluster in a novel and monophyletic group, suggesting that the origin of arsenic metabolism in haloarchaea is ancient. Our results also suggest that arsenite chemolithotrophy likely emerged within the archaeal lineage. Our results give a broad new perspective on the haloarchaea metabolism and shed light on the evolutionary history of arsenic bioenergetics. PMID:26140530

  9. Metagenomic study of red biofilms from Diamante Lake reveals ancient arsenic bioenergetics in haloarchaea.

    PubMed

    Rascovan, Nicolás; Maldonado, Javier; Vazquez, Martín P; Eugenia Farías, María

    2016-02-01

    Arsenic metabolism is proposed to be an ancient mechanism in microbial life. Different bacteria and archaea use detoxification processes to grow under high arsenic concentration. Some of them are also able to use arsenic as a bioenergetic substrate in either anaerobic arsenate respiration or chemolithotrophic growth on arsenite. However, among the archaea, bioenergetic arsenic metabolism has only been found in the Crenarchaeota phylum. Here we report the discovery of haloarchaea (Euryarchaeota phylum) biofilms forming under the extreme environmental conditions such as high salinity, pH and arsenic concentration at 4589 m above sea level inside a volcano crater in Diamante Lake, Argentina. Metagenomic analyses revealed a surprisingly high abundance of genes used for arsenite oxidation (aioBA) and respiratory arsenate reduction (arrCBA) suggesting that these haloarchaea use arsenic compounds as bioenergetics substrates. We showed that several haloarchaea species, not only from this study, have all genes required for these bioenergetic processes. The phylogenetic analysis of aioA showed that haloarchaea sequences cluster in a novel and monophyletic group, suggesting that the origin of arsenic metabolism in haloarchaea is ancient. Our results also suggest that arsenite chemolithotrophy likely emerged within the archaeal lineage. Our results give a broad new perspective on the haloarchaea metabolism and shed light on the evolutionary history of arsenic bioenergetics.

  10. Reuse of Organomineral Substrate Waste from Hydroponic Systems as Fertilizer in Open-Field Production Increases Yields, Flavonoid Glycosides, and Caffeic Acid Derivatives of Red Oak Leaf Lettuce (Lactuca sativa L.) Much More than Synthetic Fertilizer.

    PubMed

    Dannehl, Dennis; Becker, Christine; Suhl, Johanna; Josuttis, Melanie; Schmidt, Uwe

    2016-09-28

    Effects of organic waste from a hydroponic system added with minerals (organomineral fertilizer) and synthetic fertilizer on major polyphenols of red oak leaf lettuce using HPLC-DAD-ESI-MS(3) were investigated. Interestingly, contents of the main flavonoid glycosides and caffeic acid derivatives of lettuce treated with organomineral fertilizer were equal to those synthesized without soil additives. This was found although soil nutrient concentrations, including that of nitrogen, were much lower without additives. However, lettuce treated with synthetic fertilizer showed a significant decrease in contents of caffeic acid derivatives and flavonoid glycosides up to 78.3 and 54.2%, respectively. It is assumed that a negative effect of a high yield on polyphenols as described in the growth-differentiation balance hypothesis can be counteracted by (i) a higher concentration of Mg or (ii) optimal physical properties of the soil structure. Finally, the organomineral substrate waste reused as fertilizer and soil improver resulted in the highest yield (+78.7%), a total fertilizer saving of 322 kg ha(-1) and waste reduction in greenhouses. PMID:27606685

  11. Reuse of Organomineral Substrate Waste from Hydroponic Systems as Fertilizer in Open-Field Production Increases Yields, Flavonoid Glycosides, and Caffeic Acid Derivatives of Red Oak Leaf Lettuce (Lactuca sativa L.) Much More than Synthetic Fertilizer.

    PubMed

    Dannehl, Dennis; Becker, Christine; Suhl, Johanna; Josuttis, Melanie; Schmidt, Uwe

    2016-09-28

    Effects of organic waste from a hydroponic system added with minerals (organomineral fertilizer) and synthetic fertilizer on major polyphenols of red oak leaf lettuce using HPLC-DAD-ESI-MS(3) were investigated. Interestingly, contents of the main flavonoid glycosides and caffeic acid derivatives of lettuce treated with organomineral fertilizer were equal to those synthesized without soil additives. This was found although soil nutrient concentrations, including that of nitrogen, were much lower without additives. However, lettuce treated with synthetic fertilizer showed a significant decrease in contents of caffeic acid derivatives and flavonoid glycosides up to 78.3 and 54.2%, respectively. It is assumed that a negative effect of a high yield on polyphenols as described in the growth-differentiation balance hypothesis can be counteracted by (i) a higher concentration of Mg or (ii) optimal physical properties of the soil structure. Finally, the organomineral substrate waste reused as fertilizer and soil improver resulted in the highest yield (+78.7%), a total fertilizer saving of 322 kg ha(-1) and waste reduction in greenhouses.

  12. Why Is Seed Production So Variable among Individuals? A Ten-Year Study with Oaks Reveals the Importance of Soil Environment

    PubMed Central

    Pérez-Ramos, Ignacio M.; Aponte, Cristina; García, Luis V.; Padilla-Díaz, Carmen M.; Marañón, Teodoro

    2014-01-01

    Mast-seeding species exhibit not only a large inter-annual variability in seed production but also considerable variability among individuals within the same year. However, very little is known about the causes and consequences for population dynamics of this potentially large between-individual variability. Here, we quantified seed production over ten consecutive years in two Mediterranean oak species – the deciduous Quercus canariensis and the evergreen Q. suber - that coexist in forests of southern Spain. First, we calibrated likelihood models to identify which abiotic and biotic variables best explain the magnitude (hereafter seed productivity) and temporal variation of seed production at the individual level (hereafter CVi), and infer whether reproductive effort results from the available soil resources for the plant or is primarily determined by selectively favoured strategies. Second, we explored the contribution of between-individual variability in seed production as a potential mechanism of satiation for predispersal seed predators. We found that Q. canariensis trees inhabiting moister and more fertile soils were more productive than those growing in more resource-limited sites. Regarding temporal variation, individuals of the two studied oak species inhabiting these resource-rich environments also exhibited larger values of CVi. Interestingly, we detected a satiating effect on granivorous insects at the tree level in Q. suber, which was evident in those years where between-individual variability in acorn production was higher. These findings suggest that individual seed production (both in terms of seed productivity and inter-annual variability) is strongly dependent on soil resource heterogeneity (at least for one of the two studied oak species) with potential repercussions for recruitment and population dynamics. However, other external factors (such as soil heterogeneity in pathogen abundance) or certain inherent characteristics of the tree might be

  13. Phylogeographic structure and late Quaternary population history of the Japanese oak Quercus mongolica var. crispula and related species revealed by chloroplast DNA variation.

    PubMed

    Okaura, Takatomi; Quang, Nguyen Duc; Ubukata, Masatoshi; Harada, Ko

    2007-12-01

    Generally, oaks dominate the broadleaf deciduous forests in Japan. The genetic variation in 6 cpDNA regions (trnT-trnL, trnL-trnF, atpB-rbcL, and trnH-psbA speacers, trnL intron, and matK gene) with regard to the Japanese oak (Quercus mongolica var. crispula) and 3 related species in the section Prinus (Q. serrata, Q. dentata and Q. aliena) was investigated in 598 trees belonging to 44 populations distributed throughout the Japanese archipelago. Additional samples were collected from Korea, China, and Russia (Sakhalin). Thirteen haplotypes (I to XIII) were identified on the bases of 15 nucleotide substitutions and 3 indels. Haplotypes I and II were discovered in northeastern Japan, whereas haplotypes III to IX were distributed in southwestern Japan. The boundary distinguishing these 2 groups was located in central Japan coincident with the Itoigawa-Shzuoka tectonic line. Haplotype I was also found in Sakhalin, whereas haplotypes VI, VII, VIII, X, XI, XII, and XIII were found in Korea and China. Four oak species in the same location shared identical haplotypes, suggesting cpDNA introgression by occasional hybridization. Both the values of total haplotype diversity (HT) and haplotype diversity within populations (HS) in Q. mongolica var. crispula were higher in the southwestern populations than in the northeastern populations. A haplotype network indicated that haplotype VI is the ancestral haplotype. The presence of identical haplotypes in Korea, China, and Japan suggested that the haplotypes diversified on the Eurasian continent before the last glacial period. The difference in genetic structure between the northeastern and southwestern regions indicates a difference in the history of migration and recolonization in Japan during the last glacial period.

  14. Why is seed production so variable among individuals? A ten-year study with oaks reveals the importance of soil environment.

    PubMed

    Pérez-Ramos, Ignacio M; Aponte, Cristina; García, Luis V; Padilla-Díaz, Carmen M; Marañón, Teodoro

    2014-01-01

    Mast-seeding species exhibit not only a large inter-annual variability in seed production but also considerable variability among individuals within the same year. However, very little is known about the causes and consequences for population dynamics of this potentially large between-individual variability. Here, we quantified seed production over ten consecutive years in two Mediterranean oak species - the deciduous Quercus canariensis and the evergreen Q. suber - that coexist in forests of southern Spain. First, we calibrated likelihood models to identify which abiotic and biotic variables best explain the magnitude (hereafter seed productivity) and temporal variation of seed production at the individual level (hereafter CVi), and infer whether reproductive effort results from the available soil resources for the plant or is primarily determined by selectively favoured strategies. Second, we explored the contribution of between-individual variability in seed production as a potential mechanism of satiation for predispersal seed predators. We found that Q. canariensis trees inhabiting moister and more fertile soils were more productive than those growing in more resource-limited sites. Regarding temporal variation, individuals of the two studied oak species inhabiting these resource-rich environments also exhibited larger values of CVi. Interestingly, we detected a satiating effect on granivorous insects at the tree level in Q. suber, which was evident in those years where between-individual variability in acorn production was higher. These findings suggest that individual seed production (both in terms of seed productivity and inter-annual variability) is strongly dependent on soil resource heterogeneity (at least for one of the two studied oak species) with potential repercussions for recruitment and population dynamics. However, other external factors (such as soil heterogeneity in pathogen abundance) or certain inherent characteristics of the tree might be

  15. Pyrosequencing reveals the microbial communities in the Red Sea sponge Carteriospongia foliascens and their impressive shifts in abnormal tissues.

    PubMed

    Gao, Zhao-Ming; Wang, Yong; Lee, On On; Tian, Ren-Mao; Wong, Yue Him; Bougouffa, Salim; Batang, Zenon; Al-Suwailem, Abdulaziz; Lafi, Feras F; Bajic, Vladimir B; Qian, Pei-Yuan

    2014-10-01

    Abnormality and disease in sponges have been widely reported, yet how sponge-associated microbes respond correspondingly remains inconclusive. Here, individuals of the sponge Carteriospongia foliascens under abnormal status were collected from the Rabigh Bay along the Red Sea coast. Microbial communities in both healthy and abnormal sponge tissues and adjacent seawater were compared to check the influences of these abnormalities on sponge-associated microbes. In healthy tissues, we revealed low microbial diversity with less than 100 operational taxonomic units (OTUs) per sample. Cyanobacteria, affiliated mainly with the sponge-specific species "Candidatus Synechococcus spongiarum," were the dominant bacteria, followed by Bacteroidetes and Proteobacteria. Intraspecies dynamics of microbial communities in healthy tissues were observed among sponge individuals, and potential anoxygenic phototrophic bacteria were found. In comparison with healthy tissues and the adjacent seawater, abnormal tissues showed dramatic increase in microbial diversity and decrease in the abundance of sponge-specific microbial clusters. The dominated cyanobacterial species Candidatus Synechococcus spongiarum decreased and shifted to unspecific cyanobacterial clades. OTUs that showed high similarity to sequences derived from diseased corals, such as Leptolyngbya sp., were found to be abundant in abnormal tissues. Heterotrophic Planctomycetes were also specifically enriched in abnormal tissues. Overall, we revealed the microbial communities of the cyanobacteria-rich sponge, C. foliascens, and their impressive shifts under abnormality.

  16. Regal phylogeography: Range-wide survey of the marine angelfish Pygoplites diacanthus reveals evolutionary partitions between the Red Sea, Indian Ocean, and Pacific Ocean.

    PubMed

    Coleman, Richard R; Eble, Jeffrey A; DiBattista, Joseph D; Rocha, Luiz A; Randall, John E; Berumen, Michael L; Bowen, Brian W

    2016-07-01

    The regal angelfish (Pygoplites diacanthus; family Pomacanthidae) occurs on reefs from the Red Sea to the central Pacific, with an Indian Ocean/Rea Sea color morph distinct from a Pacific Ocean morph. To assess population differentiation and evaluate the possibility of cryptic evolutionary partitions in this monotypic genus, we surveyed mtDNA cytochrome b and two nuclear introns (S7 and RAG2) in 547 individuals from 15 locations. Phylogeographic analyses revealed four mtDNA lineages (d=0.006-0.015) corresponding to the Pacific Ocean, the Red Sea, and two admixed lineages in the Indian Ocean, a pattern consistent with known biogeographic barriers. Christmas Island in the eastern Indian Ocean had both Indian and Pacific lineages. Both S7 and RAG2 showed strong population-level differentiation between the Red Sea, Indian Ocean, and Pacific Ocean (ΦST=0.066-0.512). The only consistent population sub-structure within these three regions was at the Society Islands (French Polynesia), where surrounding oceanographic conditions may reinforce isolation. Coalescence analyses indicate the Pacific (1.7Ma) as the oldest extant lineage followed by the Red Sea lineage (1.4Ma). Results from a median-joining network suggest radiations of two lineages from the Red Sea that currently occupy the Indian Ocean (0.7-0.9Ma). Persistence of a Red Sea lineage through Pleistocene glacial cycles suggests a long-term refuge in this region. The affiliation of Pacific and Red Sea populations, apparent in cytochrome b and S7 (but equivocal in RAG2) raises the hypothesis that the Indian Ocean was recolonized from the Red Sea, possibly more than once. Assessing the genetic architecture of this widespread monotypic genus reveals cryptic evolutionary diversity that merits subspecific recognition. We recommend P.d. diacanthus and P.d. flavescens for the Pacific and Indian Ocean/Red Sea forms. PMID:27068838

  17. Regal phylogeography: Range-wide survey of the marine angelfish Pygoplites diacanthus reveals evolutionary partitions between the Red Sea, Indian Ocean, and Pacific Ocean.

    PubMed

    Coleman, Richard R; Eble, Jeffrey A; DiBattista, Joseph D; Rocha, Luiz A; Randall, John E; Berumen, Michael L; Bowen, Brian W

    2016-07-01

    The regal angelfish (Pygoplites diacanthus; family Pomacanthidae) occurs on reefs from the Red Sea to the central Pacific, with an Indian Ocean/Rea Sea color morph distinct from a Pacific Ocean morph. To assess population differentiation and evaluate the possibility of cryptic evolutionary partitions in this monotypic genus, we surveyed mtDNA cytochrome b and two nuclear introns (S7 and RAG2) in 547 individuals from 15 locations. Phylogeographic analyses revealed four mtDNA lineages (d=0.006-0.015) corresponding to the Pacific Ocean, the Red Sea, and two admixed lineages in the Indian Ocean, a pattern consistent with known biogeographic barriers. Christmas Island in the eastern Indian Ocean had both Indian and Pacific lineages. Both S7 and RAG2 showed strong population-level differentiation between the Red Sea, Indian Ocean, and Pacific Ocean (ΦST=0.066-0.512). The only consistent population sub-structure within these three regions was at the Society Islands (French Polynesia), where surrounding oceanographic conditions may reinforce isolation. Coalescence analyses indicate the Pacific (1.7Ma) as the oldest extant lineage followed by the Red Sea lineage (1.4Ma). Results from a median-joining network suggest radiations of two lineages from the Red Sea that currently occupy the Indian Ocean (0.7-0.9Ma). Persistence of a Red Sea lineage through Pleistocene glacial cycles suggests a long-term refuge in this region. The affiliation of Pacific and Red Sea populations, apparent in cytochrome b and S7 (but equivocal in RAG2) raises the hypothesis that the Indian Ocean was recolonized from the Red Sea, possibly more than once. Assessing the genetic architecture of this widespread monotypic genus reveals cryptic evolutionary diversity that merits subspecific recognition. We recommend P.d. diacanthus and P.d. flavescens for the Pacific and Indian Ocean/Red Sea forms.

  18. AmeriFlux US-Oho Oak Openings

    SciTech Connect

    Chen, Jiquan

    2016-01-01

    This is the AmeriFlux version of the carbon flux data for the site US-Oho Oak Openings. Site Description - The Ohio Oak Openings site is located within the Oak Openings Preserve Metropark of northwest Ohio, one of the few remaining oak woodlands/savanna/prairie complexes in the Midwest. Declared one of the "One of America's Last Great Places" by the Nature Conservancy the area consists of four main vegetation types: Oak Woodlands, Oak Savanna, Floodplain Forests and Wet Prairies. The stand surrounding the tower is mainly Oak Woodlands dominated by red, white and black oaks with a relatively abundant population of red maples indicating high soil moisture retention and a history of limited fire disturbances. Most of the area was cleared for agriculture at the time of Euro-American settlements in the mid to late-19th century. A large fraction of the cleared land was later abandoned due to the poor sandy soils. These areas reverted to Oak Savannas and in cases where fire was limited progressively made the transition to Oak Woodlands. Today patches of the forest are burned every few years as part of prescribed burning cycle to control stand density.

  19. Crystallographic study of red fluorescent protein eqFP578 and its far-red variant Katushka reveals opposite pH-induced isomerization of chromophore

    SciTech Connect

    Pletneva, Nadya V.; Pletnev, Vladimir Z.; Shemiakina, Irina I.; Chudakov, Dmitriy M.; Artemyev, Igor; Wlodawer, Alexander; Dauter, Zbigniew; Pletnev, Sergei

    2012-08-10

    The wild type red fluorescent protein eqFP578 (from sea anemone Entacmaea quadricolor, {lambda}{sub ex} = 552 nm, {lambda}{sub em} = 578 nm) and its bright far-red fluorescent variant Katushka ({lambda}{sub ex} = 588 nm, {lambda}{sub em} = 635 nm) are characterized by the pronounced pH dependence of their fluorescence. The crystal structures of eqFP578f (eqFP578 with two point mutations improving the protein folding) and Katushka have been determined at the resolution ranging from 1.15 to 1.85 {angstrom} at two pH values, corresponding to low and high level of fluorescence. The observed extinguishing of fluorescence upon reducing pH in eqFP578f and Katushka has been shown to be accompanied by the opposite trans-cis and cis-trans chromophore isomerization, respectively. Asn143, Ser158, His197 and Ser143, Leu174, and Arg197 have been shown to stabilize the respective trans and cis fluorescent states of the chromophores in eqFP578f and Katushka at higher pH. The cis state has been suggested as being primarily responsible for the observed far-red shift of the emission maximum of Katushka relative to that of eqFP578f.

  20. Hg Isotopes Reveal Importance of In-Stream Processing and Legacy Inputs in East Fork Poplar Creek, Oak Ridge, Tennessee, USA.

    NASA Astrophysics Data System (ADS)

    Demers, J. D.; Blum, J. D.; Brooks, S. C.; Donovan, P. M.; Gu, B.; Riscassi, A.

    2015-12-01

    Understanding how mercury (Hg) contaminated ecosystems will recover as atmospheric emissions and industrial point source discharges are controlled has become a driving motivation of mercury research. Key to predicting recovery of mercury contaminated ecosystems is an understanding of the mobilization of legacy Hg sources, and the subsequent bioavailability and biogeochemical cycling of mobilized Hg within aquatic ecosystems. Herein, we utilize natural abundance stable Hg isotope techniques to place new constraints on mercury sources, transport, and transformations along the flow path of East Fork Poplar Creek (EFPC), Oak Ridge, Tennessee. The isotopic composition of mercury in stream water and suspended sediment along the flow path suggest that: (1) physical processes such as dilution and sedimentation cannot fully explain decreases in total mercury concentrations along the flow path and that in-stream processes may be more important than previously realized; (2) in-stream processes include photochemical transformations (~20%), but microbial reduction is likely more dominant (~80%); and (3) additional sources of mercury inputs to EFPC at base-flow may predominantly arise from the hyporheic zone during the growing season, with adjacent riparian wetlands and non-point-source impacted tributaries increasing in importance during the dormant season when the stream channel is more hydrologically connected to the watershed.

  1. Comparative genomics reveals adaptations of a halotolerant thaumarchaeon in the interfaces of brine pools in the Red Sea

    PubMed Central

    Kamanda Ngugi, David; Blom, Jochen; Alam, Intikhab; Rashid, Mamoon; Ba-Alawi, Wail; Zhang, Guishan; Hikmawan, Tyas; Guan, Yue; Antunes, Andre; Siam, Rania; El Dorry, Hamza; Bajic, Vladimir; Stingl, Ulrich

    2015-01-01

    The bottom of the Red Sea harbors over 25 deep hypersaline anoxic basins that are geochemically distinct and characterized by vertical gradients of extreme physicochemical conditions. Because of strong changes in density, particulate and microbial debris get entrapped in the brine-seawater interface (BSI), resulting in increased dissolved organic carbon, reduced dissolved oxygen toward the brines and enhanced microbial activities in the BSI. These features coupled with the deep-sea prevalence of ammonia-oxidizing archaea (AOA) in the global ocean make the BSI a suitable environment for studying the osmotic adaptations and ecology of these important players in the marine nitrogen cycle. Using phylogenomic-based approaches, we show that the local archaeal community of five different BSI habitats (with up to 18.2% salinity) is composed mostly of a single, highly abundant Nitrosopumilus-like phylotype that is phylogenetically distinct from the bathypelagic thaumarchaea; ammonia-oxidizing bacteria were absent. The composite genome of this novel Nitrosopumilus-like subpopulation (RSA3) co-assembled from multiple single-cell amplified genomes (SAGs) from one such BSI habitat further revealed that it shares ∼54% of its predicted genomic inventory with sequenced Nitrosopumilus species. RSA3 also carries several, albeit variable gene sets that further illuminate the phylogenetic diversity and metabolic plasticity of this genus. Specifically, it encodes for a putative proline-glutamate ‘switch' with a potential role in osmotolerance and indirect impact on carbon and energy flows. Metagenomic fragment recruitment analyses against the composite RSA3 genome, Nitrosopumilus maritimus, and SAGs of mesopelagic thaumarchaea also reiterate the divergence of the BSI genotypes from other AOA. PMID:25105904

  2. Glacial and pluvial periods: their relationship revealed by pleistocene sediments of the red sea and gulf of aden.

    PubMed

    Deuser, W G; Ross, E H; Waterman, L S

    1976-03-19

    Oxygen isotope analyses of planktonic foraminifera from the Red Sea and Gulf of Aden indicate that during periods of maximum continental and polar glaciation in the late Pleistocene, the Red Sea was subject to strong evaporation. Between glacial maximums the salinity of the Red Sea was equal to or below that of the open ocean. This suggests that high-latitude glacial periods corresponded in time to interpluvial stages in the present-day desert belt of northern Africa, whereas high-latitude interglacial periods coincided with pluvial stages.

  3. Glacial and pluvial periods: their relationship revealed by pleistocene sediments of the red sea and gulf of aden.

    PubMed

    Deuser, W G; Ross, E H; Waterman, L S

    1976-03-19

    Oxygen isotope analyses of planktonic foraminifera from the Red Sea and Gulf of Aden indicate that during periods of maximum continental and polar glaciation in the late Pleistocene, the Red Sea was subject to strong evaporation. Between glacial maximums the salinity of the Red Sea was equal to or below that of the open ocean. This suggests that high-latitude glacial periods corresponded in time to interpluvial stages in the present-day desert belt of northern Africa, whereas high-latitude interglacial periods coincided with pluvial stages. PMID:17781646

  4. Identification, amounts, and kinetics of extraction of C-glucosidic ellagitannins during wine aging in oak barrels or in stainless steel tanks with oak chips.

    PubMed

    Jourdes, Michaël; Michel, Julien; Saucier, Cédric; Quideau, Stéphane; Teissedre, Pierre-Louis

    2011-09-01

    The C-glucosidic ellagitannins are found in wine as a result of its aging in oak barrels or in stainless steel tanks with oak chips. Once dissolved in this slightly acidic solution, the C-glucosidic ellagitannins vescalagin can react with nucleophilic entities present in red wine, such as ethanol, catechin, and epicatechin, to generate condensed hybrid products such as the β-1-O-ethylvescalagin and the flavano-ellagitannins (acutissimin A/B and epiacutissimin A/B), respectively. During this study, we first monitored the extraction kinetic and the evolution of the eight major oak-derived C-glucosidic ellagitannins in red wines aged in oak barrels or in stainless steel tank with oak chips. Their extraction rates appeared to be faster during red wine aging in stainless steel tanks with oak chips. However, their overall concentrations in wines were found higher in the wine aged in barrels. The formation rates of the vescalagin-coupled derivatives were also estimated for the first time under both red wine aging conditions (i.e., oak barrels or stainless steel tanks with oak chips). As observed for the oak-native C-glucosidic ellagitannins, the concentrations of these vescalagin derivatives were higher in the red wine aged in oak barrels than in stainless steel tanks with oak chips. Despite these differences, their relative composition was similar under both red wine aging conditions. Finally, the impact of the oak chips size and toasting level on the C-glucosidic ellagitannins concentration in wine was also investigated.

  5. High genetic divergence in miniature breeds of Japanese native chickens compared to Red Junglefowl, as revealed by microsatellite analysis.

    PubMed

    Tadano, R; Nishibori, M; Imamura, Y; Matsuzaki, M; Kinoshita, K; Mizutani, M; Namikawa, T; Tsudzuki, M

    2008-02-01

    A wide diversity of domesticated chicken breeds exist due to artificial selection on the basis of human interests. Miniature variants (bantams) are eminently illustrative of the large changes from ancestral junglefowls. In this report, the genetic characterization of seven Japanese miniature chicken breeds and varieties, together with institute-kept Red Junglefowl, was conducted by means of typing 40 microsatellites located on 21 autosomes. We drew focus to genetic differentiation between the miniature chicken breeds and Red Junglefowl in particular. A total of 305 alleles were identified: 27 of these alleles (8.9%) were unique to the Red Junglefowl with high frequencies (>20%). Significantly high genetic differences (F(ST)) were obtained between Red Junglefowl and all other breeds with a range of 0.3901-0.5128. Individual clustering (constructed from combinations of the proportion of shared alleles and the neighbour-joining method) indicated high genetic divergence among breeds including Red Junglefowl. There were also individual assignments on the basis of the Bayesian and distance-based approaches. The microsatellite differences in the miniature chicken breeds compared to the presumed wild ancestor reflected the phenotypic diversity among them, indicating that each of these miniature chicken breeds is a unique gene pool. PMID:18254737

  6. Chloride accumulation in the soil and groundwater under a downslope oak hedge reveals the impressive evapotranspiration of wooded linear structures below a temperate climate

    NASA Astrophysics Data System (ADS)

    Grimaldi, C.; Thomas, Z.; Merot, Ph.

    2009-04-01

    Although it is an essential element in plants, Cl- is excluded to a large extent by roots during absorption of water and nutrients, and its concentration rises as a function of evapotranspiration. Compared to herbaceous vegetation, high transpiration rates are measured for hedgerow trees. This article deals with the influence of a tree hedge on the soil and groundwater Cl- concentrations and with the possibility to use Cl- as an indicator of transpiration and water movements in the hedge vicinity. Cl- concentrations were measured over one year at different depths in the unsaturated zone and in the groundwater along a transect intersecting a bottomland oak hedge in the North-West of France, under an oceanic wet temperate climate. We observed a strong spatial variation of Cl- concentrations, with very high values up to 2 g L-1 in the unsaturated zone and 1.2 g L-1 in the upper part of the groundwater. These concentrations contrasted with the low values measured in the unsaturated zone far from the hedge (10 mg L-1) and in the deepest part of the groundwater (60-70 mg L-1). Cl- accumulation in the unsaturated zone at the end of the growing season allowed us to identify the active root zone extension of trees. The root zone begins at the surface under the hedge and widens out at depth at an increasing distance from the hedge, extending laterally on at least 10 m on both sides of the hedge. While the root zone is deeper at the upslope side of the hedge, it is nearer the ground surface downslope, where the development of roots is limited by the water-table close to the surface. Cl- concentrations varied along the year. In winter, upslope of the hedge, downwards leaching partly renewed the soil solution, while under the hedge or farther downslope the lack of any significant water movement resulted in Cl- accumulation. For a bottomland hedge, the proximity of the water-table probably increases the water availability of water for tree transpiration. The measurement of Cl

  7. Stable oxygen isotope analysis reveal vegetation influence on soil water movement and ecosystem water fluxes in a semi-arid oak woodland

    NASA Astrophysics Data System (ADS)

    Piayda, Arndt; Dubbert, Maren; Werner, Christiane; Cuntz, Matthias

    2015-04-01

    Mechanistically disentangling the role and function of vegetation within the hydrological cycle is one of the key questions in the interdisciplinary field of ecohydrology. The presence of vegetation can have various impacts on soil water relations: transpiration of active vegetation causes great water losses, rainfall is intercepted, soil evaporation can be reduced and infiltration, hydraulic redistribution and translatory flow might be altered. In drylands, covering around 40% of the global land surface, the carbon cycle is closely coupled to water availability due to (seasonal) droughts. Specifically savannah type ecosystems, which cover large areas worldwide, are, due to their bi-layered structure, very suitable to study the effects of distinct vegetation types on the ecosystem water cycle. Oxygen isotope signatures (δ18O) have been used to partition ecosystem evapotranspiration (ET ) because of the distinct isotopic compositions of water transpired by leaves relative to soil evaporated vapor. Recent developments in laser spectroscopy enable measurements of δ18O in the vapor phase with high temporal resolution in the field and bear a novel opportunity to trace water movement within the ecosystem. In the present study, the effects of distinct vegetation layers (i.e. trees and herbaceous vegetation) on soil water infiltration and redistribution as well as ecosystem water fluxes in a Mediterranean cork-oak woodland are disentangled. An irrigation experiment was carried out using δ18O labeled water to quantify the distinct effects of trees and herbaceous vegetation on 1) infiltration and redistribution of water in the soil profile and 2) to disentangle the effects of tree cover on the contribution of unproductive soil evaporation and understory transpiration to total ET . First results proof that stable δ18O isotopes measured onsite with laser spectroscopy is a valuable tool to trace water movement in the soil showing a much higher sensitivity than common TDR

  8. Range-wide multilocus phylogeography of the red fox reveals ancient continental divergence, minimal genomic exchange and distinct demographic histories.

    PubMed

    Statham, Mark J; Murdoch, James; Janecka, Jan; Aubry, Keith B; Edwards, Ceiridwen J; Soulsbury, Carl D; Berry, Oliver; Wang, Zhenghuan; Harrison, David; Pearch, Malcolm; Tomsett, Louise; Chupasko, Judith; Sacks, Benjamin N

    2014-10-01

    Widely distributed taxa provide an opportunity to compare biogeographic responses to climatic fluctuations on multiple continents and to investigate speciation. We conducted the most geographically and genomically comprehensive study to date of the red fox (Vulpes vulpes), the world's most widely distributed wild terrestrial carnivore. Analyses of 697 bp of mitochondrial sequence in ~1000 individuals suggested an ancient Middle Eastern origin for all extant red foxes and a 400 kya (SD = 139 kya) origin of the primary North American (Nearctic) clade. Demographic analyses indicated a major expansion in Eurasia during the last glaciation (~50 kya), coinciding with a previously described secondary transfer of a single matriline (Holarctic) to North America. In contrast, North American matrilines (including the transferred portion of Holarctic clade) exhibited no signatures of expansion until the end of the Pleistocene (~12 kya). Analyses of 11 autosomal loci from a subset of foxes supported the colonization time frame suggested by mtDNA (and the fossil record) but, in contrast, reflected no detectable secondary transfer, resulting in the most fundamental genomic division of red foxes at the Bering Strait. Endemic continental Y-chromosome clades further supported this pattern. Thus, intercontinental genomic exchange was overall very limited, consistent with long-term reproductive isolation since the initial colonization of North America. Based on continental divergence times in other carnivoran species pairs, our findings support a model of peripatric speciation and are consistent with the previous classification of the North American red fox as a distinct species, V. fulva. PMID:25212210

  9. THE RISE AND FALL OF PASSIVE DISK GALAXIES: MORPHOLOGICAL EVOLUTION ALONG THE RED SEQUENCE REVEALED BY COSMOS

    SciTech Connect

    Bundy, Kevin; Hopkins, Philip; Ma, Chung-Pei; Scarlata, Claudia; Capak, Peter; Carollo, C. M.; Oesch, Pascal; Ellis, Richard S.; Salvato, Mara; Scoville, Nick; Drory, Niv; Leauthaud, Alexie; Koekemoer, Anton M.; Murray, Norman; Ilbert, Olivier; Pozzetti, Lucia

    2010-08-20

    The increasing abundance of passive 'red-sequence' galaxies since z {approx} 1-2 is mirrored by a coincident rise in the number of galaxies with spheroidal morphologies. In this paper, however, we show in detail, that, the correspondence between galaxy morphology and color is not perfect, providing insight into the physical origin of this evolution. Using the COSMOS survey, we study a significant population of red-sequence galaxies with disk-like morphologies. These passive disks typically have Sa-Sb morphological types with large bulges, but they are not confined to dense environments. They represent nearly one-half of all red-sequence galaxies and dominate at lower masses ({approx}<10{sup 10} M{sub sun}) where they are increasingly disk-dominated. As a function of time, the abundance of passive disks with M {sub *} {approx}< 10{sup 11} M{sub sun} increases, but not as fast as red-sequence spheroidals in the same mass range. At higher mass, the passive disk population has declined since z {approx} 1, likely because they transform into spheroidals. Based on these trends, we estimate that as much as 60% of galaxies transitioning onto the red sequence evolve through a passive disk phase. The origin of passive disks therefore has broad implications for our understanding of how star formation shuts down. Because passive disks tend to be more bulge-dominated than their star-forming counterparts, a simple fading of blue disks does not fully explain their origin. We explore the strengths and weaknesses of several more sophisticated explanations, including environmental effects, internal stabilization, and disk regrowth during gas-rich mergers. While previous work has sought to explain color and morphological transformations with a single process, these observations open the way to new insight by highlighting the fact that galaxy evolution may actually proceed through several separate stages.

  10. Standing-wave-excited multiplanar fluorescence in a laser scanning microscope reveals 3D information on red blood cells

    NASA Astrophysics Data System (ADS)

    Amor, Rumelo; Mahajan, Sumeet; Amos, William Bradshaw; McConnell, Gail

    2014-12-01

    Standing-wave excitation of fluorescence is highly desirable in optical microscopy because it improves the axial resolution. We demonstrate here that multiplanar excitation of fluorescence by a standing wave can be produced in a single-spot laser scanning microscope by placing a plane reflector close to the specimen. We report here a variation in the intensity of fluorescence of successive planes related to the Stokes shift of the dye. We show by the use of dyes specific for the cell membrane how standing-wave excitation can be exploited to generate precise contour maps of the surface membrane of red blood cells, with an axial resolution of ~90 nm. The method, which requires only the addition of a plane mirror to an existing confocal laser scanning microscope, may well prove useful in studying diseases which involve the red cell membrane, such as malaria.

  11. Standing-wave-excited multiplanar fluorescence in a laser scanning microscope reveals 3D information on red blood cells.

    PubMed

    Amor, Rumelo; Mahajan, Sumeet; Amos, William Bradshaw; McConnell, Gail

    2014-12-08

    Standing-wave excitation of fluorescence is highly desirable in optical microscopy because it improves the axial resolution. We demonstrate here that multiplanar excitation of fluorescence by a standing wave can be produced in a single-spot laser scanning microscope by placing a plane reflector close to the specimen. We report here a variation in the intensity of fluorescence of successive planes related to the Stokes shift of the dye. We show by the use of dyes specific for the cell membrane how standing-wave excitation can be exploited to generate precise contour maps of the surface membrane of red blood cells, with an axial resolution of ≈90 nm. The method, which requires only the addition of a plane mirror to an existing confocal laser scanning microscope, may well prove useful in studying diseases which involve the red cell membrane, such as malaria.

  12. STRUCTURAL GLITCHES NEAR THE CORES OF RED GIANTS REVEALED BY OSCILLATIONS IN G-MODE PERIOD SPACINGS FROM STELLAR MODELS

    SciTech Connect

    Cunha, M. S.; Avelino, P. P.; Stello, D.; Christensen-Dalsgaard, J.; Townsend, R. H. D.

    2015-06-01

    With recent advances in asteroseismology it is now possible to peer into the cores of red giants, potentially providing a way to study processes such as nuclear burning and mixing through their imprint as sharp structural variations—glitches—in the stellar cores. Here we show how such core glitches can affect the oscillations we observe in red giants. We derive an analytical expression describing the expected frequency pattern in the presence of a glitch. This formulation also accounts for the coupling between acoustic and gravity waves. From an extensive set of canonical stellar models we find glitch-induced variation in the period spacing and inertia of non-radial modes during several phases of red giant evolution. Significant changes are seen in the appearance of mode amplitude and frequency patterns in asteroseismic diagrams such as the power spectrum and the échelle diagram. Interestingly, along the red giant branch glitch-induced variation occurs only at the luminosity bump, potentially providing a direct seismic indicator of stars in that particular evolution stage. Similarly, we find the variation at only certain post-helium-ignition evolution stages, namely, in the early phases of helium core burning and at the beginning of helium shell burning, signifying the asymptotic giant branch bump. Based on our results, we note that assuming stars to be glitch-free, while they are not, can result in an incorrect estimate of the period spacing. We further note that including diffusion and mixing beyond classical Schwarzschild could affect the characteristics of the glitches, potentially providing a way to study these physical processes.

  13. Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing.

    PubMed

    Qian, Pei-Yuan; Wang, Yong; Lee, On On; Lau, Stanley C K; Yang, Jiangke; Lafi, Feras F; Al-Suwailem, Abdulaziz; Wong, Tim Y H

    2011-03-01

    The ecosystems of the Red Sea are among the least-explored microbial habitats in the marine environment. In this study, we investigated the microbial communities in the water column overlying the Atlantis II Deep and Discovery Deep in the Red Sea. Taxonomic classification of pyrosequencing reads of the 16S rRNA gene amplicons showed vertical stratification of microbial diversity from the surface water to 1500 m below the surface. Significant differences in both bacterial and archaeal diversity were observed in the upper (20 [corrected] and 50 m) and deeper layers (200 and 1500 m). There were no obvious differences in community structure at the same depth for the two sampling stations. The bacterial community in the upper layer was dominated by Cyanobacteria whereas the deeper layer harbored a large proportion of Proteobacteria. Among Archaea, Euryarchaeota, especially Halobacteriales, were dominant in the upper layer but diminished drastically in the deeper layer where Desulfurococcales belonging to Crenarchaeota became the dominant group. The results of our study indicate that the microbial communities sampled in this study are different from those identified in water column in other parts of the world. The depth-wise compositional variation in the microbial communities is attributable to their adaptations to the various environments in the Red Sea. PMID:20668490

  14. Different speciation for bromine in brown and red algae, revealed by in vivo X-ray absorption spectroscopic studies.

    PubMed

    Küpper, Frithjof C; Leblanc, Catherine; Meyer-Klaucke, Wolfram; Potin, Philippe; Feiters, Martin C

    2014-08-01

    Members of various algal lineages are known to be strong producers of atmospherically relevant halogen emissions, that is a consequence of their capability to store and metabolize halogens. This study uses a noninvasive, synchrotron-based technique, X-ray absorption spectroscopy, for addressing in vivo bromine speciation in the brown algae Ectocarpus siliculosus, Ascophyllum nodosum, and Fucus serratus, the red algae Gracilaria dura, G. gracilis, Chondrus crispus, Osmundea pinnatifida, Asparagopsis armata, Polysiphonia elongata, and Corallina officinalis, the diatom Thalassiosira rotula, the dinoflagellate Lingulodinium polyedrum and a natural phytoplankton sample. The results highlight a diversity of fundamentally different bromine storage modes: while most of the stramenopile representatives and the dinoflagellate store mostly bromide, there is evidence for Br incorporated in nonaromatic hydrocarbons in Thalassiosira. Red algae operate various organic bromine stores - including a possible precursor (by the haloform reaction) for bromoform in Asparagopsis and aromatically bound Br in Polysiphonia and Corallina. Large fractions of the bromine in the red algae G. dura and C. crispus and the brown alga F. serratus are present as Br(-) defects in solid KCl, similar to what was reported earlier for Laminaria parts. These results are discussed according to different defensive strategies that are used within algal taxa to cope with biotic or abiotic stresses. PMID:26988449

  15. Different speciation for bromine in brown and red algae, revealed by in vivo X-ray absorption spectroscopic studies.

    PubMed

    Küpper, Frithjof C; Leblanc, Catherine; Meyer-Klaucke, Wolfram; Potin, Philippe; Feiters, Martin C

    2014-08-01

    Members of various algal lineages are known to be strong producers of atmospherically relevant halogen emissions, that is a consequence of their capability to store and metabolize halogens. This study uses a noninvasive, synchrotron-based technique, X-ray absorption spectroscopy, for addressing in vivo bromine speciation in the brown algae Ectocarpus siliculosus, Ascophyllum nodosum, and Fucus serratus, the red algae Gracilaria dura, G. gracilis, Chondrus crispus, Osmundea pinnatifida, Asparagopsis armata, Polysiphonia elongata, and Corallina officinalis, the diatom Thalassiosira rotula, the dinoflagellate Lingulodinium polyedrum and a natural phytoplankton sample. The results highlight a diversity of fundamentally different bromine storage modes: while most of the stramenopile representatives and the dinoflagellate store mostly bromide, there is evidence for Br incorporated in nonaromatic hydrocarbons in Thalassiosira. Red algae operate various organic bromine stores - including a possible precursor (by the haloform reaction) for bromoform in Asparagopsis and aromatically bound Br in Polysiphonia and Corallina. Large fractions of the bromine in the red algae G. dura and C. crispus and the brown alga F. serratus are present as Br(-) defects in solid KCl, similar to what was reported earlier for Laminaria parts. These results are discussed according to different defensive strategies that are used within algal taxa to cope with biotic or abiotic stresses.

  16. Real-Time Mass Spectrometry Monitoring of Oak Wood Toasting: Elucidating Aroma Development Relevant to Oak-aged Wine Quality.

    PubMed

    Farrell, Ross R; Wellinger, Marco; Gloess, Alexia N; Nichols, David S; Breadmore, Michael C; Shellie, Robert A; Yeretzian, Chahan

    2015-11-27

    We introduce a real-time method to monitor the evolution of oak aromas during the oak toasting process. French and American oak wood boards were toasted in an oven at three different temperatures, while the process-gas was continuously transferred to the inlet of a proton-transfer-reaction time-of-flight mass spectrometer for online monitoring. Oak wood aroma compounds important for their sensory contribution to oak-aged wine were tentatively identified based on soft ionization and molecular mass. The time-intensity profiles revealed toasting process dynamics illustrating in real-time how different compounds evolve from the oak wood during toasting. Sufficient sensitivity was achieved to observe spikes in volatile concentrations related to cracking phenomena on the oak wood surface. The polysaccharide-derived compounds exhibited similar profiles; whilst for lignin-derived compounds eugenol formation differed from that of vanillin and guaiacol at lower toasting temperatures. Significant generation of oak lactone from precursors was evident at 225 (o)C. Statistical processing of the real-time aroma data showed similarities and differences between individual oak boards and oak wood sourced from the different origins. This study enriches our understanding of the oak toasting process and demonstrates a new analytical approach for research on wood volatiles.

  17. Real-Time Mass Spectrometry Monitoring of Oak Wood Toasting: Elucidating Aroma Development Relevant to Oak-aged Wine Quality

    PubMed Central

    Farrell, Ross R.; Wellinger, Marco; Gloess, Alexia N.; Nichols, David S.; Breadmore, Michael C.; Shellie, Robert A.; Yeretzian, Chahan

    2015-01-01

    We introduce a real-time method to monitor the evolution of oak aromas during the oak toasting process. French and American oak wood boards were toasted in an oven at three different temperatures, while the process-gas was continuously transferred to the inlet of a proton-transfer-reaction time-of-flight mass spectrometer for online monitoring. Oak wood aroma compounds important for their sensory contribution to oak-aged wine were tentatively identified based on soft ionization and molecular mass. The time-intensity profiles revealed toasting process dynamics illustrating in real-time how different compounds evolve from the oak wood during toasting. Sufficient sensitivity was achieved to observe spikes in volatile concentrations related to cracking phenomena on the oak wood surface. The polysaccharide-derived compounds exhibited similar profiles; whilst for lignin-derived compounds eugenol formation differed from that of vanillin and guaiacol at lower toasting temperatures. Significant generation of oak lactone from precursors was evident at 225 oC. Statistical processing of the real-time aroma data showed similarities and differences between individual oak boards and oak wood sourced from the different origins. This study enriches our understanding of the oak toasting process and demonstrates a new analytical approach for research on wood volatiles. PMID:26610612

  18. Real-Time Mass Spectrometry Monitoring of Oak Wood Toasting: Elucidating Aroma Development Relevant to Oak-aged Wine Quality

    NASA Astrophysics Data System (ADS)

    Farrell, Ross R.; Wellinger, Marco; Gloess, Alexia N.; Nichols, David S.; Breadmore, Michael C.; Shellie, Robert A.; Yeretzian, Chahan

    2015-11-01

    We introduce a real-time method to monitor the evolution of oak aromas during the oak toasting process. French and American oak wood boards were toasted in an oven at three different temperatures, while the process-gas was continuously transferred to the inlet of a proton-transfer-reaction time-of-flight mass spectrometer for online monitoring. Oak wood aroma compounds important for their sensory contribution to oak-aged wine were tentatively identified based on soft ionization and molecular mass. The time-intensity profiles revealed toasting process dynamics illustrating in real-time how different compounds evolve from the oak wood during toasting. Sufficient sensitivity was achieved to observe spikes in volatile concentrations related to cracking phenomena on the oak wood surface. The polysaccharide-derived compounds exhibited similar profiles; whilst for lignin-derived compounds eugenol formation differed from that of vanillin and guaiacol at lower toasting temperatures. Significant generation of oak lactone from precursors was evident at 225 oC. Statistical processing of the real-time aroma data showed similarities and differences between individual oak boards and oak wood sourced from the different origins. This study enriches our understanding of the oak toasting process and demonstrates a new analytical approach for research on wood volatiles.

  19. Effect of Habitat Size, Quality, and Isolation on Functional Groups of Beetles in Hollow Oaks

    PubMed Central

    Pilskog, Hanne Eik; Birkemoe, Tone; Framstad, Erik; Sverdrup-Thygeson, Anne

    2016-01-01

    One of the largest threats to biodiversity is land use change and habitat loss. Hollow oaks (Quercus spp. L.) are well-defined patches that are hotspots for biodiversity and red-listed species, but they are often rare and fragmented in the landscape. We investigated the effect of patch size, habitat quality, and isolation on functional groups and red-listed saproxylic beetles in hollow oaks (n = 40) in Norway. The groups were defined by host tree association, trophic grouping, and red-listed status. Habitat quality, represented by tree form was most important in explaining species richness for most groups. Patch size, represented by circumference and amount of dead branches, was most important in explaining abundance. Isolation, that is single oaks compared with oaks in groups, had a negative effect on the abundance of beetles feeding both on wood and fungi (xylomycethopagous), as well as on species associated with broadleaved trees (oak semi-specialists), but did not affect species richness. This indicates that at this scale and in this landscape, isolated oaks are as species rich and valuable for conservation as other oaks, although some functional groups may be more vulnerable to isolation than others. The red-listed species only responded to patch size, indicating that oaks with large circumference and many dead branches are especially important for red-listed species and for conservation. PMID:26945089

  20. Effect of Habitat Size, Quality, and Isolation on Functional Groups of Beetles in Hollow Oaks.

    PubMed

    Pilskog, Hanne Eik; Birkemoe, Tone; Framstad, Erik; Sverdrup-Thygeson, Anne

    2016-01-01

    One of the largest threats to biodiversity is land use change and habitat loss. Hollow oaks (Quercus spp. L.) are well-defined patches that are hotspots for biodiversity and red-listed species, but they are often rare and fragmented in the landscape. We investigated the effect of patch size, habitat quality, and isolation on functional groups and red-listed saproxylic beetles in hollow oaks (n = 40) in Norway. The groups were defined by host tree association, trophic grouping, and red-listed status. Habitat quality, represented by tree form was most important in explaining species richness for most groups. Patch size, represented by circumference and amount of dead branches, was most important in explaining abundance. Isolation, that is single oaks compared with oaks in groups, had a negative effect on the abundance of beetles feeding both on wood and fungi (xylomycethopagous), as well as on species associated with broadleaved trees (oak semi-specialists), but did not affect species richness. This indicates that at this scale and in this landscape, isolated oaks are as species rich and valuable for conservation as other oaks, although some functional groups may be more vulnerable to isolation than others. The red-listed species only responded to patch size, indicating that oaks with large circumference and many dead branches are especially important for red-listed species and for conservation. PMID:26945089

  1. The genome phylogeny of domestic cat, red panda and five mustelid species revealed by comparative chromosome painting and G-banding.

    PubMed

    Nie, Wenhui; Wang, Jinhuan; O'Brien, Patricia C M; Fu, Beiyuan; Ying, Tian; Ferguson-Smith, Malcolm A; Yang, Fengtang

    2002-01-01

    Genome-wide homology maps among stone marten (Martes foina, 2n = 38), domestic cat (Felis catus, 2n = 38), American mink (Mustela vison, 2n = 30), yellow-throated marten (Martes flavigula, 2n = 40), Old World badger (Meles meles, 2n = 44), ferret badger (Melogale moschata, 2n = 38) and red panda (Ailurus fulgens, 2n = 36) have been established by cross-species chromosome painting with a complete set of stone marten probes. In total, 18 stone marten autosomal probes reveal 20, 19, 21, 18 and 21 pairs of homologous chromosomal segments in the respective genomes of American mink, yellow-throated marten. Old World badger, ferret badger and red panda. Reciprocal painting between stone marten and cat delineated 21 pairs of homologous segments shared in both stone marten and cat genomes. The chromosomal painting results indicate that most chromosomes of these species are highly conserved and show one-to-one correspondence with stone marten and cat chromosomes or chromosomal arms, and that only a few interchromosomal rearrangements (Robertsonian fusions and fissions) have occurred during species radiation. By comparing the distribution patterns of conserved chromosomal segments in both these species and the putative ancestral carnivore karyotype, we have reconstructed the pathway of karyotype evolution of these species from the putative 2n = 42 ancestral carnivore karyotype. Our results support a close phylogenetic relationship between the red panda and mustelids. The homology data presented in these maps will allow us to transfer the cat gene mapping data to other unmapped carnivore species.

  2. The crystal structure of red fluorescent protein TagRFP-T reveals the mechanism of its superior photostability.

    PubMed

    Liu, Rui; Liang, Qing-Nan; Du, Shu-Qi; Hu, Xiao-Jian; Ding, Yu

    2016-08-19

    The red fluorescent protein variant TagRFP-T has greatly improved photostability over its parent molecule, TagRFP, but the underlying mechanism leading to this improvement is to date unknown. The 1.95 Å resolution crystallographic structure of TagRFP-T showed that its chromophore exists as a mixture of cis and trans coplanar isomers in roughly equal proportions. Interestingly, both isomers are able to fluoresce, a property that has never been observed in any other fluorescent protein. We propose a "circular restoration model" for TagRFP-T to explain its superior photostability: There are four co-existing chromophore states (cis/trans protonated/ionized state) that can be driven by light to transform from one state into another. This model also explains how TagRPF-T essentially eliminates the temporary dark state (reversible photobleaching). PMID:27297107

  3. Transcript Quantification by RNA-Seq Reveals Differentially Expressed Genes in the Red and Yellow Fruits of Fragaria vesca

    PubMed Central

    Zhang, Junxiang; Jiang, Guihua; Miao, Lixiang; Han, Guofen; Liu, Yuexue; Li, He; Zhang, Zhihong

    2015-01-01

    Fragaria vesca (2n = 2x = 14), the woodland strawberry, is a perennial herbaceous plant with a small sequenced genome (240 Mb). It is commonly used as a genetic model plant for the Fragaria genus and the Rosaceae family. Fruit skin color is one of the most important traits for both the commercial and esthetic value of strawberry. Anthocyanins are the most prominent pigments in strawberry that bring red, pink, white, and yellow hues to the fruits in which they accumulate. In this study, we conducted a de novo assembly of the fruit transcriptome of woodland strawberry and compared the gene expression profiles with yellow (Yellow Wonder, YW) and red (Ruegen, RG) fruits. De novo assembly yielded 75,426 unigenes, 21.3% of which were longer than 1,000 bp. Among the high-quality unique sequences, 45,387 (60.2%) had at least one significant match to an existing gene model. A total of 595 genes, representing 0.79% of total unigenes, were differentially expressed in YW and RG. Among them, 224 genes were up-regulated and 371 genes were down-regulated in the fruit of YW. Particularly, some flavonoid biosynthetic pathway genes, including C4H, CHS, CHI, F3H, DFR and ANS, as well as some transcription factors (TFs), including MYB (putative MYB86 and MYB39), WDR and MADS, were down-regulated in YW fruit, concurrent with a reduction in anthocyanin accumulation in the yellow pigment phenotype, whereas a putative transcription repressor MYB1R was up-regulated in YW fruit. The altered expression levels of the genes encoding flavonoid biosynthetic enzymes and TFs were confirmed by quantitative RT-PCR. Our study provides important insights into the molecular mechanisms underlying the yellow pigment phenotype in F. vesca. PMID:26636322

  4. Transcript Quantification by RNA-Seq Reveals Differentially Expressed Genes in the Red and Yellow Fruits of Fragaria vesca.

    PubMed

    Zhang, Yuchao; Li, Weijia; Dou, Yujuan; Zhang, Junxiang; Jiang, Guihua; Miao, Lixiang; Han, Guofen; Liu, Yuexue; Li, He; Zhang, Zhihong

    2015-01-01

    Fragaria vesca (2n = 2x = 14), the woodland strawberry, is a perennial herbaceous plant with a small sequenced genome (240 Mb). It is commonly used as a genetic model plant for the Fragaria genus and the Rosaceae family. Fruit skin color is one of the most important traits for both the commercial and esthetic value of strawberry. Anthocyanins are the most prominent pigments in strawberry that bring red, pink, white, and yellow hues to the fruits in which they accumulate. In this study, we conducted a de novo assembly of the fruit transcriptome of woodland strawberry and compared the gene expression profiles with yellow (Yellow Wonder, YW) and red (Ruegen, RG) fruits. De novo assembly yielded 75,426 unigenes, 21.3% of which were longer than 1,000 bp. Among the high-quality unique sequences, 45,387 (60.2%) had at least one significant match to an existing gene model. A total of 595 genes, representing 0.79% of total unigenes, were differentially expressed in YW and RG. Among them, 224 genes were up-regulated and 371 genes were down-regulated in the fruit of YW. Particularly, some flavonoid biosynthetic pathway genes, including C4H, CHS, CHI, F3H, DFR and ANS, as well as some transcription factors (TFs), including MYB (putative MYB86 and MYB39), WDR and MADS, were down-regulated in YW fruit, concurrent with a reduction in anthocyanin accumulation in the yellow pigment phenotype, whereas a putative transcription repressor MYB1R was up-regulated in YW fruit. The altered expression levels of the genes encoding flavonoid biosynthetic enzymes and TFs were confirmed by quantitative RT-PCR. Our study provides important insights into the molecular mechanisms underlying the yellow pigment phenotype in F. vesca.

  5. Transcript Quantification by RNA-Seq Reveals Differentially Expressed Genes in the Red and Yellow Fruits of Fragaria vesca.

    PubMed

    Zhang, Yuchao; Li, Weijia; Dou, Yujuan; Zhang, Junxiang; Jiang, Guihua; Miao, Lixiang; Han, Guofen; Liu, Yuexue; Li, He; Zhang, Zhihong

    2015-01-01

    Fragaria vesca (2n = 2x = 14), the woodland strawberry, is a perennial herbaceous plant with a small sequenced genome (240 Mb). It is commonly used as a genetic model plant for the Fragaria genus and the Rosaceae family. Fruit skin color is one of the most important traits for both the commercial and esthetic value of strawberry. Anthocyanins are the most prominent pigments in strawberry that bring red, pink, white, and yellow hues to the fruits in which they accumulate. In this study, we conducted a de novo assembly of the fruit transcriptome of woodland strawberry and compared the gene expression profiles with yellow (Yellow Wonder, YW) and red (Ruegen, RG) fruits. De novo assembly yielded 75,426 unigenes, 21.3% of which were longer than 1,000 bp. Among the high-quality unique sequences, 45,387 (60.2%) had at least one significant match to an existing gene model. A total of 595 genes, representing 0.79% of total unigenes, were differentially expressed in YW and RG. Among them, 224 genes were up-regulated and 371 genes were down-regulated in the fruit of YW. Particularly, some flavonoid biosynthetic pathway genes, including C4H, CHS, CHI, F3H, DFR and ANS, as well as some transcription factors (TFs), including MYB (putative MYB86 and MYB39), WDR and MADS, were down-regulated in YW fruit, concurrent with a reduction in anthocyanin accumulation in the yellow pigment phenotype, whereas a putative transcription repressor MYB1R was up-regulated in YW fruit. The altered expression levels of the genes encoding flavonoid biosynthetic enzymes and TFs were confirmed by quantitative RT-PCR. Our study provides important insights into the molecular mechanisms underlying the yellow pigment phenotype in F. vesca. PMID:26636322

  6. Aroma potential of oak battens prepared from decommissioned oak barrels.

    PubMed

    Li, Sijing; Crump, Anna M; Grbin, Paul R; Cozzolino, Daniel; Warren, Peter; Hayasaka, Yoji; Wilkinson, Kerry L

    2015-04-01

    During barrel maturation, volatile compounds are extracted from oak wood and impart aroma and flavor to wine, enhancing its character and complexity. However, barrels contain a finite pool of extractable material, which diminishes with time. As a consequence, most barrels are decommissioned after 5 or 6 years. This study investigated whether or not decommissioned barrels can be "reclaimed" and utilized as a previously untapped source of quality oak for wine maturation. Oak battens were prepared from staves of decommissioned French and American oak barrels, and their composition analyzed before and after toasting. The oak lactone glycoconjugate content of untoasted reclaimed oak was determined by liquid chromatography-tandem mass spectrometry, while the concentrations of cis- and trans-oak lactone, guaiacol, 4-methlyguaiacol, vanillin, eugenol, furfural, and 5-methylfurfural present in toasted reclaimed oak were determined by gas chromatography-mass spectrometry. Aroma potential was then evaluated by comparing the composition of reclaimed oak with that of new oak. Comparable levels of oak lactone glycoconjugates and oak volatiles were observed, demonstrating the aroma potential of reclaimed oak and therefore its suitability as a raw material for alternative oak products, i.e., chips or battens, for the maturation of wine. The temperature profiles achieved during toasting were also measured to evaluate the viability of any yeast or bacteria present in reclaimed oak. PMID:25771908

  7. Clade-Specific 16S Ribosomal DNA Oligonucleotides Reveal the Predominance of a Single Marine Synechococcus Clade throughout a Stratified Water Column in the Red Sea

    PubMed Central

    Fuller, Nicholas J.; Marie, Dominique; Partensky, Frédéric; Vaulot, Daniel; Post, Anton F.; Scanlan, David J.

    2003-01-01

    Phylogenetic relationships among members of the marine Synechococcus genus were determined following sequencing of the 16S ribosomal DNA (rDNA) from 31 novel cultured isolates from the Red Sea and several other oceanic environments. This revealed a large genetic diversity within the marine Synechococcus cluster consistent with earlier work but also identified three novel clades not previously recognized. Phylogenetic analyses showed one clade, containing halotolerant isolates lacking phycoerythrin (PE) and including strains capable, or not, of utilizing nitrate as the sole N source, which clustered within the MC-A (Synechococcus subcluster 5.1) lineage. Two copies of the 16S rRNA gene are present in marine Synechococcus genomes, and cloning and sequencing of these copies from Synechococcus sp. strain WH 7803 and genomic information from Synechococcus sp. strain WH 8102 reveal these to be identical. Based on the 16S rDNA sequence information, clade-specific oligonucleotides for the marine Synechococcus genus were designed and their specificity was optimized. Using dot blot hybridization technology, these probes were used to determine the in situ community structure of marine Synechococcus populations in the Red Sea at the time of a Synechococcus maximum during April 1999. A predominance of genotypes representative of a single clade was found, and these genotypes were common among strains isolated into culture. Conversely, strains lacking PE, which were also relatively easily isolated into culture, represented only a minor component of the Synechococcus population. Genotypes corresponding to well-studied laboratory strains also appeared to be poorly represented in this stratified water column in the Red Sea. PMID:12732508

  8. Transcriptome-wide polymorphisms of red abalone (Haliotis rufescens) reveal patterns of gene flow and local adaptation.

    PubMed

    De Wit, Pierre; Palumbi, Stephen R

    2013-06-01

    Global climate change is projected to accelerate during the next century, altering oceanic patterns in temperature, pH and oxygen concentrations. Documenting patterns of genetic adaptation to these variables in locations that currently experience geographic variation in them is an important tool in understanding the potential for natural selection to allow populations to adapt as climate change proceeds. We sequenced the mantle transcriptome of 39 red abalone (Haliotis rufescens) individuals from three regions (Monterey Bay, Sonoma, north of Cape Mendocino) distinct in temperature, aragonite saturation, exposure to hypoxia and disease pressure along the California coast. Among 1.17 × 10(6) Single Nucleotide Polymorphisms (SNPs) identified in this study (1.37% of the transcriptome), 21 579 could be genotyped for all individuals. A principal components analysis concluded that the vast majority of SNPs show no population structure from Monterey, California to the Oregon border, in corroboration with several previous studies. In contrast, an FST outlier analysis indicated 691 SNPs as exhibiting significantly higher than expected differentiation (experiment-wide P < 0.05). From these, it was possible to identify 163 genes through BLAST annotation, 34 of which contained more than one outlier SNP. A large number of these genes are involved in biomineralization, energy metabolism, heat-, disease- or hypoxia-tolerance. These genes are candidate loci for spatial adaptation to geographic variation that is likely to increase in the future.

  9. Quantitative phospho-proteomics reveals the Plasmodium merozoite triggers pre-invasion host kinase modification of the red cell cytoskeleton.

    PubMed

    Zuccala, Elizabeth S; Satchwell, Timothy J; Angrisano, Fiona; Tan, Yan Hong; Wilson, Marieangela C; Heesom, Kate J; Baum, Jake

    2016-01-01

    The invasive blood-stage malaria parasite - the merozoite - induces rapid morphological changes to the target erythrocyte during entry. However, evidence for active molecular changes in the host cell that accompany merozoite invasion is lacking. Here, we use invasion inhibition assays, erythrocyte resealing and high-definition imaging to explore red cell responses during invasion. We show that although merozoite entry does not involve erythrocyte actin reorganisation, it does require ATP to complete the process. Towards dissecting the ATP requirement, we present an in depth quantitative phospho-proteomic analysis of the erythrocyte during each stage of invasion. Specifically, we demonstrate extensive increased phosphorylation of erythrocyte proteins on merozoite attachment, including modification of the cytoskeletal proteins beta-spectrin and PIEZO1. The association with merozoite contact but not active entry demonstrates that parasite-dependent phosphorylation is mediated by host-cell kinase activity. This provides the first evidence that the erythrocyte is stimulated to respond to early invasion events through molecular changes in its membrane architecture. PMID:26830761

  10. Reverse Engineering Applied to Red Human Hair Pheomelanin Reveals Redox-Buffering as a Pro-Oxidant Mechanism.

    PubMed

    Kim, Eunkyoung; Panzella, Lucia; Micillo, Raffaella; Bentley, William E; Napolitano, Alessandra; Payne, Gregory F

    2015-01-01

    Pheomelanin has been implicated in the increased susceptibility to UV-induced melanoma for people with light skin and red hair. Recent studies identified a UV-independent pathway to melanoma carcinogenesis and implicated pheomelanin's pro-oxidant properties that act through the generation of reactive oxygen species and/or the depletion of cellular antioxidants. Here, we applied an electrochemically-based reverse engineering methodology to compare the redox properties of human hair pheomelanin with model synthetic pigments and natural eumelanin. This methodology exposes the insoluble melanin samples to complex potential (voltage) inputs and measures output response characteristics to assess redox activities. The results demonstrate that both eumelanin and pheomelanin are redox-active, they can rapidly (sec-min) and repeatedly redox-cycle between oxidized and reduced states, and pheomelanin possesses a more oxidative redox potential. This study suggests that pheomelanin's redox-based pro-oxidant activity may contribute to sustaining a chronic oxidative stress condition through a redox-buffering mechanism. PMID:26669666

  11. Quantitative phospho-proteomics reveals the Plasmodium merozoite triggers pre-invasion host kinase modification of the red cell cytoskeleton

    PubMed Central

    Zuccala, Elizabeth S.; Satchwell, Timothy J.; Angrisano, Fiona; Tan, Yan Hong; Wilson, Marieangela C.; Heesom, Kate J.; Baum, Jake

    2016-01-01

    The invasive blood-stage malaria parasite – the merozoite – induces rapid morphological changes to the target erythrocyte during entry. However, evidence for active molecular changes in the host cell that accompany merozoite invasion is lacking. Here, we use invasion inhibition assays, erythrocyte resealing and high-definition imaging to explore red cell responses during invasion. We show that although merozoite entry does not involve erythrocyte actin reorganisation, it does require ATP to complete the process. Towards dissecting the ATP requirement, we present an in depth quantitative phospho-proteomic analysis of the erythrocyte during each stage of invasion. Specifically, we demonstrate extensive increased phosphorylation of erythrocyte proteins on merozoite attachment, including modification of the cytoskeletal proteins beta-spectrin and PIEZO1. The association with merozoite contact but not active entry demonstrates that parasite-dependent phosphorylation is mediated by host-cell kinase activity. This provides the first evidence that the erythrocyte is stimulated to respond to early invasion events through molecular changes in its membrane architecture. PMID:26830761

  12. Long-term monitoring of captive red drum Sciaenops ocellatus reveals that calling incidence and structure correlate with egg deposition.

    PubMed

    Montie, E W; Kehrer, C; Yost, J; Brenkert, K; O'Donnell, T; Denson, M R

    2016-05-01

    In the present study, quantitative data were collected to clarify the relationship between calling, call structure and eggs produced in a captive population of red drum Sciaenops ocellatus. Sciaenops ocellatus were held in four tanks equipped with long-term acoustic loggers to record underwater sound throughout a simulated reproductive season. Maximal sound production of captive S. ocellatus occurred when the photoperiod shifted from 13·0 to 12·5 h of light, and the water temperature decreased to c. 25° C. These captive settings are similar to the amount of daylight and water temperatures observed during the autumn, which is the primary spawning period for S. ocellatus. Sciaenops ocellatus exhibited daily patterns of calling with peak sound production occurring in the evenings between 0·50 h before dark and 1·08 h after dark. Spawning occurred only on evenings in which S. ocellatus were calling, and spawning was more productive when S. ocellatus produced more calls with longer durations and more pulses. This study provides ample evidence that sound production equates to spawning in captive S. ocellatus when calls are longer than 0·8 s and contain more than seven pulses. The fact that more calling, longer calls and higher sound pressure levels are associated with spawns that are more productive indicates that acoustic metrics can provide quantitative information on spawning in the wild. PMID:27170109

  13. Reverse Engineering Applied to Red Human Hair Pheomelanin Reveals Redox-Buffering as a Pro-Oxidant Mechanism

    PubMed Central

    Kim, Eunkyoung; Panzella, Lucia; Micillo, Raffaella; Bentley, William E.; Napolitano, Alessandra; Payne, Gregory F.

    2015-01-01

    Pheomelanin has been implicated in the increased susceptibility to UV-induced melanoma for people with light skin and red hair. Recent studies identified a UV-independent pathway to melanoma carcinogenesis and implicated pheomelanin’s pro-oxidant properties that act through the generation of reactive oxygen species and/or the depletion of cellular antioxidants. Here, we applied an electrochemically-based reverse engineering methodology to compare the redox properties of human hair pheomelanin with model synthetic pigments and natural eumelanin. This methodology exposes the insoluble melanin samples to complex potential (voltage) inputs and measures output response characteristics to assess redox activities. The results demonstrate that both eumelanin and pheomelanin are redox-active, they can rapidly (sec-min) and repeatedly redox-cycle between oxidized and reduced states, and pheomelanin possesses a more oxidative redox potential. This study suggests that pheomelanin’s redox-based pro-oxidant activity may contribute to sustaining a chronic oxidative stress condition through a redox-buffering mechanism. PMID:26669666

  14. Reverse Engineering Applied to Red Human Hair Pheomelanin Reveals Redox-Buffering as a Pro-Oxidant Mechanism.

    PubMed

    Kim, Eunkyoung; Panzella, Lucia; Micillo, Raffaella; Bentley, William E; Napolitano, Alessandra; Payne, Gregory F

    2015-01-01

    Pheomelanin has been implicated in the increased susceptibility to UV-induced melanoma for people with light skin and red hair. Recent studies identified a UV-independent pathway to melanoma carcinogenesis and implicated pheomelanin's pro-oxidant properties that act through the generation of reactive oxygen species and/or the depletion of cellular antioxidants. Here, we applied an electrochemically-based reverse engineering methodology to compare the redox properties of human hair pheomelanin with model synthetic pigments and natural eumelanin. This methodology exposes the insoluble melanin samples to complex potential (voltage) inputs and measures output response characteristics to assess redox activities. The results demonstrate that both eumelanin and pheomelanin are redox-active, they can rapidly (sec-min) and repeatedly redox-cycle between oxidized and reduced states, and pheomelanin possesses a more oxidative redox potential. This study suggests that pheomelanin's redox-based pro-oxidant activity may contribute to sustaining a chronic oxidative stress condition through a redox-buffering mechanism.

  15. Use of the mercury record in Red Tarn sediments to reveal air pollution history and the implications of catchment erosion.

    PubMed

    Yang, Handong; Smyntek, Peter

    2014-11-01

    Red Tarn is a cirque lake with a small ratio of terrestrial area to lake area, surrounded by glacial edges with little soil in the catchment. A sediment core taken from the deepest area of the lake was (210)Pb dated and validated by (137)Cs and (241)Am stratigraphic records. The core was analysed for mercury (Hg) and other elements. The results show Hg pollution before the mid-19th century, and thereafter, a rapid increase in Hg pollution into modern time, followed by a decline in pollution since 1968-1970. This agrees well with the decline in UK Hg emissions since the Clear Air Act of 1968. The results suggest that the core has recorded Hg air pollution history, and it can be used to benchmark Hg changes in the sediments from other lakes in the region up to the late 1980s. However, increased (210)Pb fluxes after the late 1980s indicate enhanced catchment erosion, which has brought more legacy Hg in the catchment into the lake. As a consequence, since 2000, the Hg in the sediment record no longer reflects the atmospheric Hg deposition. The core shows how dominant Hg sources for the lake changed from atmospheric deposition to the catchment inputs, and demonstrates that contaminated catchment inputs have not only increased Hg fluxes to the lake sediments but have also increased Hg concentrations in the sediments.

  16. Quantitative phospho-proteomics reveals the Plasmodium merozoite triggers pre-invasion host kinase modification of the red cell cytoskeleton.

    PubMed

    Zuccala, Elizabeth S; Satchwell, Timothy J; Angrisano, Fiona; Tan, Yan Hong; Wilson, Marieangela C; Heesom, Kate J; Baum, Jake

    2016-02-02

    The invasive blood-stage malaria parasite - the merozoite - induces rapid morphological changes to the target erythrocyte during entry. However, evidence for active molecular changes in the host cell that accompany merozoite invasion is lacking. Here, we use invasion inhibition assays, erythrocyte resealing and high-definition imaging to explore red cell responses during invasion. We show that although merozoite entry does not involve erythrocyte actin reorganisation, it does require ATP to complete the process. Towards dissecting the ATP requirement, we present an in depth quantitative phospho-proteomic analysis of the erythrocyte during each stage of invasion. Specifically, we demonstrate extensive increased phosphorylation of erythrocyte proteins on merozoite attachment, including modification of the cytoskeletal proteins beta-spectrin and PIEZO1. The association with merozoite contact but not active entry demonstrates that parasite-dependent phosphorylation is mediated by host-cell kinase activity. This provides the first evidence that the erythrocyte is stimulated to respond to early invasion events through molecular changes in its membrane architecture.

  17. Analysis of rbcL sequences reveals the global biodiversity, community structure, and biogeographical pattern of thermoacidophilic red algae (Cyanidiales).

    PubMed

    Hsieh, Chia-Jung; Zhan, Shing Hei; Lin, Yiching; Tang, Sen-Lin; Liu, Shao-Lun

    2015-08-01

    Thermoacidophilic cyanidia (Cyanidiales) are the primary photosynthetic eukaryotes in volcanic areas. These red algae also serve as important model organisms for studying life in extreme habitats. The global biodiversity and community structure of Cyanidiales remain unclear despite previous sampling efforts. Here, we surveyed the Cyanidiales biodiversity in the Tatun Volcano Group (TVG) area in Taiwan using environmental DNA sequencing. We generated 174 rbcL sequences from eight samples from four regions in the TVG area, and combined them with 239 publicly available rbcL sequences collected worldwide. Species delimita-tion using this large rbcL data set suggested at least 20 Cyanidiales OTUs (operational taxono-mic units) worldwide, almost three times the presently recognized seven species. Results from environmental DNA showed that OTUs in the TVG area were divided into three groups: (i) dominant in hot springs with 92%-99% sequence identity to Galdieria maxima; (ii) largely distributed in drier and more acidic microhabitats with 99% identity to G. partita; and (iii) primarily distributed in cooler microhabitats and lacking identity to known cyanidia species (a novel Cyanidiales lineage). In both global and individual area analyses, we observed greater species diversity in non-aquatic than aquatic habitats. Community structure analysis showed high similarity between the TVG community and West Pacific-Iceland communities, reflecting their geographic proximity to each other. Our study is the first examination of the global species diversity and biogeographic affinity of cyanidia. Additionally, our data illuminate the influence of microhabitat type on Cyanidiales diversity and highlight intriguing questions for future ecological research. PMID:26986790

  18. Calmodulin activation of the Ca2+ pump revealed by fluorescent chelator dyes in human red blood cell ghosts

    PubMed Central

    1992-01-01

    Ca2+ transport in red blood cell ghosts was monitored with fura2 or quin2 incorporated as the free acid during resealing. This is the first report of active transport monitored by the fluorescent intensity of the chelator dyes fura2 (5-50 microM) or quin2 (250 microM) in hemoglobin-depleted ghosts. Since there are no intracellular compartments in ghosts and the intracellular concentrations of all assay chelator substances including calmodulin (CaM), the dyes, and ATP could be set, the intracellular concentrations of free and total Ca [( Cafree]i and [Catotal]i) could be calculated during the transport. Ghosts prepared with or without CaM rapidly extruded Ca2+ to a steady- state concentration of 60-100 nM. A 10(4)-fold gradient for Ca2+ was routinely produced in medium containing 1 mM Ca2+. During active Ca2+ extrusion, d[Cafree]i/dt was a second order function of [Cafree]i and was independent of the dye concentration, whereas d[Catotal]i/dt increased as a first order function of both the [Cafree]i and the concentration of the Ca:dye complex. CaM (5 microM) increased d[Catotal]i/dt by 400% at 1 microM [Cafree]i, while d[Cafree]i/dt increased by only 25%. From a series of experiments we conclude that chelated forms of Ca2+ serve as substrates for the pump under permissive control of the [Cafree]i, and this dual effect may explain cooperativity. Free Ca2+ is extruded, and probably also Ca2+ bound to CaM or other chelators, while CaM and the chelators are retained in the cell. PMID:1371307

  19. Consort contact dermatitis due to oak moss.

    PubMed

    Held, J L; Ruszkowski, A M; Deleo, V A

    1988-02-01

    An allergic contact dermatitis in a woman was found to be due to oak moss in her husband's after-shave lotion. When routine patch testing reveals a positive reaction, the dermatologist should consider exposure to the antigen not only in the patient but also through contact with the patient's consort.

  20. Analysis of novel sph (spherocytosis) alleles in mice reveals allele-specific loss of band 3 and adducin in alpha-spectrin-deficient red cells.

    PubMed

    Robledo, Raymond F; Lambert, Amy J; Birkenmeier, Connie S; Cirlan, Marius V; Cirlan, Andreea Flavia M; Campagna, Dean R; Lux, Samuel E; Peters, Luanne L

    2010-03-01

    Five spontaneous, allelic mutations in the alpha-spectrin gene, Spna1, have been identified in mice (spherocytosis [sph], sph(1J), sph(2J), sph(2BC), sph(Dem)). All cause severe hemolytic anemia. Here, analysis of 3 new alleles reveals previously unknown consequences of red blood cell (RBC) spectrin deficiency. In sph(3J), a missense mutation (H2012Y) in repeat 19 introduces a cryptic splice site resulting in premature termination of translation. In sph(Ihj), a premature stop codon occurs (Q1853Stop) in repeat 18. Both mutations result in markedly reduced RBC membrane spectrin content, decreased band 3, and absent beta-adducin. Reevaluation of available, previously described sph alleles reveals band 3 and adducin deficiency as well. In sph(4J), a missense mutation occurs in the C-terminal EF hand domain (C2384Y). Notably, an equally severe hemolytic anemia occurs despite minimally decreased membrane spectrin with normal band 3 levels and present, although reduced, beta-adducin. The severity of anemia in sph(4J) indicates that the highly conserved cysteine residue at the C-terminus of alpha-spectrin participates in interactions critical to membrane stability. The data reinforce the notion that a membrane bridge in addition to the classic protein 4.1-p55-glycophorin C linkage exists at the RBC junctional complex that involves interactions between spectrin, adducin, and band 3.

  1. Densities of Agrilus auroguttatus and Other Borers in California and Arizona Oaks

    PubMed Central

    Haavik, Laurel J.; Coleman, Tom W.; Flint, Mary Louise; Venette, Robert C.; Seybold, Steven J.

    2014-01-01

    We investigated within-tree population density of a new invasive species in southern California, the goldspotted oak borer, Agrilus auroguttatus Schaeffer (Coleoptera: Buprestidae), with respect to host species and the community of other borers present. We measured emergence hole densities of A. auroguttatus and other borers on the lower stem (bole) of naïve oaks at 18 sites in southern California and on co-evolved oaks at seven sites in southeastern Arizona. We sampled recently dead oaks in an effort to quantify the community of primary and secondary borers associated with mortality—species that were likely to interact with A. auroguttatus. Red oaks (Section Lobatae) produced greater densities of A. auroguttatus than white oaks (Section Quercus). On red oaks, A. auroguttatus significantly outnumbered native borers in California (mean ± SE of 9.6 ± 0.7 versus 4.5 ± 0.6 emergence holes per 0.09 m2 of bark surface), yet this was not the case in Arizona (0.9 ± 0.2 versus 1.1 ± 0.2 emergence holes per 0.09 m2). In California, a species that is taxonomically intermediate between red and white oaks, Quercus chrysolepis (Section Protobalanus), exhibited similar A. auroguttatus emergence densities compared with a co-occurring red oak, Q. kelloggii. As an invasive species in California, A. auroguttatus may affect the community of native borers (mainly Buprestidae and Cerambycidae) that feed on the lower boles of oaks, although it remains unclear whether its impact will be positive or negative. PMID:26462589

  2. New Approach for Differentiating Sessile and Pedunculate Oak: Development of a LC-HRMS Method To Quantitate Triterpenoids in Wood.

    PubMed

    Marchal, Axel; Prida, Andréi; Dubourdieu, Denis

    2016-01-27

    Oak aging is a crucial step in winemaking during which the organoleptic properties of wine are modified. Various parameters affect the chemical composition of oak wood including botanical origin, which has been previously shown to be a determinant factor. This study focused on the development of a LC-HRMS method to assay four recently discovered taste-active triterpenes (three sweet and one bitter). The method was applied to evaluate the effect of oak species (Quercus petraea and Quercus robur) on the concentration of these molecules in wood. The results showed that sessile oak was richer in sweet triterpenes and poorer in the bitter one than pedunculate oak, with high interindividual variations within species. Furthermore, a triterpenoid index was calculated to reveal the triterpenoid composition of oak wood. This index appears to be a promising tool for the unambiguous discrimination of oak species and could offer new insights into oak wood selection by coopers and the monitoring of oak aging by winemakers.

  3. Proteomics of red and white corolla limbs in petunia reveals a novel function of the anthocyanin regulator ANTHOCYANIN1 in determining flower longevity.

    PubMed

    Prinsi, Bhakti; Negri, Alfredo S; Quattrocchio, Francesca M; Koes, Ronald E; Espen, Luca

    2016-01-10

    The Petunia hybrida ANTHOCYANIN1 (AN1) gene encodes a transcription factor that regulates both the expression of genes involved in anthocyanin synthesis and the acidification of the vacuolar lumen in corolla epidermal cells. In this work, the comparison between the red flowers of the R27 line with the white flowers of the isogenic an1 mutant line W225 showed that the AN1 gene has further pleiotropic effects on flavonoid biosynthesis as well as on distant physiological traits. The proteomic profiling showed that the an1 mutation was associated to changes in accumulation of several proteins, affecting both anthocyanin synthesis and primary metabolism. The flavonoid composition study confirmed that the an1 mutation provoked a broad attenuation of the entire flavonoid pathway, probably by indirect biochemical events. Moreover, proteomic changes and variation of biochemical parameters revealed that the an1 mutation induced a delay in the onset of flower senescence in W225, as supported by the enhanced longevity of the W225 flowers in planta and the loss of sensitivity of cut flowers to sugar. This study suggests that AN1 is possibly involved in the perception and/or transduction of ethylene signal during flower senescence.

  4. Proteomics of red and white corolla limbs in petunia reveals a novel function of the anthocyanin regulator ANTHOCYANIN1 in determining flower longevity.

    PubMed

    Prinsi, Bhakti; Negri, Alfredo S; Quattrocchio, Francesca M; Koes, Ronald E; Espen, Luca

    2016-01-10

    The Petunia hybrida ANTHOCYANIN1 (AN1) gene encodes a transcription factor that regulates both the expression of genes involved in anthocyanin synthesis and the acidification of the vacuolar lumen in corolla epidermal cells. In this work, the comparison between the red flowers of the R27 line with the white flowers of the isogenic an1 mutant line W225 showed that the AN1 gene has further pleiotropic effects on flavonoid biosynthesis as well as on distant physiological traits. The proteomic profiling showed that the an1 mutation was associated to changes in accumulation of several proteins, affecting both anthocyanin synthesis and primary metabolism. The flavonoid composition study confirmed that the an1 mutation provoked a broad attenuation of the entire flavonoid pathway, probably by indirect biochemical events. Moreover, proteomic changes and variation of biochemical parameters revealed that the an1 mutation induced a delay in the onset of flower senescence in W225, as supported by the enhanced longevity of the W225 flowers in planta and the loss of sensitivity of cut flowers to sugar. This study suggests that AN1 is possibly involved in the perception and/or transduction of ethylene signal during flower senescence. PMID:26459403

  5. Candidate gene screen in the red flour beetle Tribolium reveals six3 as ancient regulator of anterior median head and central complex development.

    PubMed

    Posnien, Nico; Koniszewski, Nikolaus Dieter Bernhard; Hein, Hendrikje Jeannette; Bucher, Gregor

    2011-12-01

    Several highly conserved genes play a role in anterior neural plate patterning of vertebrates and in head and brain patterning of insects. However, head involution in Drosophila has impeded a systematic identification of genes required for insect head formation. Therefore, we use the red flour beetle Tribolium castaneum in order to comprehensively test the function of orthologs of vertebrate neural plate patterning genes for a function in insect head development. RNAi analysis reveals that most of these genes are indeed required for insect head capsule patterning, and we also identified several genes that had not been implicated in this process before. Furthermore, we show that Tc-six3/optix acts upstream of Tc-wingless, Tc-orthodenticle1, and Tc-eyeless to control anterior median development. Finally, we demonstrate that Tc-six3/optix is the first gene known to be required for the embryonic formation of the central complex, a midline-spanning brain part connected to the neuroendocrine pars intercerebralis. These functions are very likely conserved among bilaterians since vertebrate six3 is required for neuroendocrine and median brain development with certain mutations leading to holoprosencephaly.

  6. Transcriptome profiling reveals differential gene expression in proanthocyanidin biosynthesis associated with red/green skin color mutant of pear (Pyrus communis L.)

    PubMed Central

    Yang, Yanan; Yao, Gaifang; Yue, Wenquan; Zhang, Shaoling; Wu, Jun

    2015-01-01

    Anthocyanin concentration is the key determinant for red skin color in pear fruit. However, the molecular basis for development of red skin is complicated and has not been well-understood thus far. “Starkrimson” (Pyrus communis L.), an introduced red pear cultivated in the north of China and its green mutant provides a desirable red/green pair for identification of candidate genes involved in color variation. Here, we sequenced and annotated the transcriptome for the red/green color mutant at three stages of development using Illumina RNA-seq technology. The total number of mapped reads ranged from 26 to 46 million in six libraries. About 70.11–71.95% of clean reads could be mapped to the reference genome. Compared with green colored fruit, a total of 2230 differentially expressed genes (DEGs) were identified in red fruit. Gene Ontology (GO) terms were defined for 4886 differential transcripts involved in 15 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. Three DEGs were identified as candidate genes in the flavonoid pathway, LAR, ANR, and C3H. Tellingly, higher expression was found for genes encoding ANR and LAR in the green color mutant, promoting the proanthocyanidin (PA) pathway and leading to lower anthocyanin. MYB-binding cis-motifs were identified in the promoter region of LAR and ANR. Based on these findings, we speculate that the regulation of PA biosynthesis might be a key factor for this red/green color mutant. Besides the known MYB and MADS transcription families, two new families, AP2 and WRKY, were identified as having high correlation with anthocyanin biosynthesis in red skinned pear. In addition, qRT-PCR was used to confirm the transcriptome results for 17 DEGs, high correlation of gene expression, further proved that AP2 and WARK regulated the anthocyanin biosynthesis in red skinned “Starkrimson,” and ANR and LAR promote PA biosynthesis and contribute to the green skinned variant. This study can serve as a valuable new resource

  7. Transcriptome profiling reveals differential gene expression in proanthocyanidin biosynthesis associated with red/green skin color mutant of pear (Pyrus communis L.).

    PubMed

    Yang, Yanan; Yao, Gaifang; Yue, Wenquan; Zhang, Shaoling; Wu, Jun

    2015-01-01

    Anthocyanin concentration is the key determinant for red skin color in pear fruit. However, the molecular basis for development of red skin is complicated and has not been well-understood thus far. "Starkrimson" (Pyrus communis L.), an introduced red pear cultivated in the north of China and its green mutant provides a desirable red/green pair for identification of candidate genes involved in color variation. Here, we sequenced and annotated the transcriptome for the red/green color mutant at three stages of development using Illumina RNA-seq technology. The total number of mapped reads ranged from 26 to 46 million in six libraries. About 70.11-71.95% of clean reads could be mapped to the reference genome. Compared with green colored fruit, a total of 2230 differentially expressed genes (DEGs) were identified in red fruit. Gene Ontology (GO) terms were defined for 4886 differential transcripts involved in 15 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. Three DEGs were identified as candidate genes in the flavonoid pathway, LAR, ANR, and C3H. Tellingly, higher expression was found for genes encoding ANR and LAR in the green color mutant, promoting the proanthocyanidin (PA) pathway and leading to lower anthocyanin. MYB-binding cis-motifs were identified in the promoter region of LAR and ANR. Based on these findings, we speculate that the regulation of PA biosynthesis might be a key factor for this red/green color mutant. Besides the known MYB and MADS transcription families, two new families, AP2 and WRKY, were identified as having high correlation with anthocyanin biosynthesis in red skinned pear. In addition, qRT-PCR was used to confirm the transcriptome results for 17 DEGs, high correlation of gene expression, further proved that AP2 and WARK regulated the anthocyanin biosynthesis in red skinned "Starkrimson," and ANR and LAR promote PA biosynthesis and contribute to the green skinned variant. This study can serve as a valuable new resource laying a

  8. Phylogeographic, ancient DNA, fossil and morphometric analyses reveal ancient and modern introductions of a large mammal: the complex case of red deer (Cervus elaphus) in Ireland

    NASA Astrophysics Data System (ADS)

    Carden, Ruth F.; McDevitt, Allan D.; Zachos, Frank E.; Woodman, Peter C.; O'Toole, Peter; Rose, Hugh; Monaghan, Nigel T.; Campana, Michael G.; Bradley, Daniel G.; Edwards, Ceiridwen J.

    2012-05-01

    The problem of how and when the island of Ireland attained its contemporary fauna has remained a key question in understanding Quaternary faunal assemblages. We assessed the complex history and origins of the red deer (Cervus elaphus) in Ireland using a multi-disciplinary approach. Mitochondrial sequences of contemporary and ancient red deer (dating from c 30,000 to 1700 cal. yr BP) were compared to decipher possible source populations of red deer in Ireland, in addition to craniometric analyses of skulls from candidate regions to distinguish between different colonization scenarios. Radiocarbon dating was undertaken on all bone fragments that were previously undated. Finally, a comprehensive review of the scientific literature, unpublished reports and other sources of data were also searched for red deer remains within Irish palaeontological and archaeological contexts. Despite being present in Ireland prior to the Last Glacial Maximum (LGM), there is a notable scarcity of red deer from the Younger Dryas stadial period until the Neolithic. The presence of red deer in Irish archaeological sites then occurs more frequently relative to other species. One population in the southwest of Ireland (Co. Kerry) shared haplotypes with the ancient Irish specimens and molecular dating and craniometric analysis suggests its persistence in Ireland since the Neolithic period. The synthesis of the results from this multi-disciplinary study all indicate that red deer were introduced by humans during the Irish Neolithic period and that one of these populations persists today. In conjunction with recent results from other species, Neolithic people from Ireland's nearest landmass, Britain, played a vital role in establishing its contemporary fauna and flora.

  9. The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids.

    PubMed

    Nozaki, Hisayoshi; Matsuzaki, Motomichi; Takahara, Manabu; Misumi, Osami; Kuroiwa, Haruko; Hasegawa, Masami; Shin-i, Tadasu; Kohara, Yuji; Ogasawara, Naotake; Kuroiwa, Tsuneyoshi

    2003-04-01

    Red algae are one of the main photosynthetic eukaryotic lineages and are characterized by primitive features, such as a lack of flagella and the presence of phycobiliproteins in the chloroplast. Recent molecular phylogenetic studies using nuclear gene sequences suggest two conflicting hypotheses (monophyly versus non-monophyly) regarding the relationships between red algae and green plants. Although kingdom-level phylogenetic analyses using multiple nuclear genes from a wide-range of eukaryotic lineages were very recently carried out, they used highly divergent gene sequences of the cryptomonad nucleomorph (as the red algal taxon) or incomplete red algal gene sequences. In addition, previous eukaryotic phylogenies based on nuclear genes generally included very distant archaebacterial sequences (designated as the outgroup) and/or amitochondrial organisms, which may carry unusual gene substitutions due to parasitism or the absence of mitochondria. Here, we carried out phylogenetic analyses of various lineages of mitochondria-containing eukaryotic organisms using nuclear multigene sequences, including the complete sequences from the primitive red alga Cyanidioschyzon merolae. Amino acid sequence data for two concatenated paralogous genes (alpha- and beta-tubulin) from mitochondria-containing organisms robustly resolved the basal position of the cellular slime molds, which were designated as the outgroup in our phylogenetic analyses. Phylogenetic analyses of 53 operational taxonomic units (OTUs) based on a 1525-amino-acid sequence of four concatenated nuclear genes (actin, elongation factor-1alpha, alpha-tubulin, and beta-tubulin) reliably resolved the phylogeny only in the maximum parsimonious (MP) analysis, which indicated the presence of two large robust monophyletic groups (Groups A and B) and the basal eukaryotic lineages (red algae, true slime molds, and amoebae). Group A corresponded to the Opisthokonta (Metazoa and Fungi), whereas Group B included various

  10. Learning experiences at Oak Ridge

    SciTech Connect

    White, R.K.

    1990-01-01

    The Oak Ridge Operations (ORO) of DOE has organized an Environmental Restoration Program to handle environmental cleanup activitis for the Oak Ridge Reservation (ORR) following General Watkins' reorganization at DOE Headquarters. Based on the major facilities and locations of contamination sites, the Environmental Restoration Program is divided into five subprograms: Oak Ridge, National Laboatory (ORNL) sites, y-12 Plant sites, Oak Ridge Gaseous Diffusion Plant (ORGDP) sites, Oak Ridge Associated Universities (ORAU) sites and off-site areas. The Office of Risk Analysis at ORNL was established under the auspices of the Environmental Restoration Program to implement Superfun legislation in the five subprograms of DOE-ORO. Risk assessment must examine protetial human health and ecological impacts from contaminant sources that range from highly radioactive materials to toxic chemicals and mixed wastes. The remedial alternatives we are evaluating need to reach acceptable levels of risk effectively while also being cost-efficient. The purpose of this paper is to highlight areas of particular interest and concern at Oak Ridge and to discuss, where possible, solutions implemented by the Oak Ridge Environmental Restoation Program.

  11. Poison Ivy, Oak, and Sumac

    MedlinePlus

    ... U.S.) is a delayed allergic reaction. Brushing the plant on the skin results in blisters and slightly ... of poison ivy, poison oak, and poison sumac plants. People typically have itchy bumps (papules) and blisters ( ...

  12. Contact sensitivity to oak moss.

    PubMed

    Gonçalo, S; Cabral, F; Gonçalo, M

    1988-11-01

    Oak moss allergy was the principle allergen in contact sensitivity to perfumes (45%); 31 patients reacting to oak moss were studied. The sensitivity was attributed to contact with perfumes in 20, lichens in 7 and unknown in 4. Atranorin was the most frequent allergen, followed by usnic, evernic and fumarprotocetraric acids. Concomitant allergy occurred to several lichen acids and also to balsam of Peru, colophony and other fragrance components.

  13. Contact sensitivity to oak moss.

    PubMed

    Gonçalo, S; Cabral, F; Gonçalo, M

    1988-11-01

    Oak moss allergy was the principle allergen in contact sensitivity to perfumes (45%); 31 patients reacting to oak moss were studied. The sensitivity was attributed to contact with perfumes in 20, lichens in 7 and unknown in 4. Atranorin was the most frequent allergen, followed by usnic, evernic and fumarprotocetraric acids. Concomitant allergy occurred to several lichen acids and also to balsam of Peru, colophony and other fragrance components. PMID:3233955

  14. Freshwater on the route of hominids "out of Africa" during the last interglacial revealed by U-Th in northern Red Sea fossil reefs

    NASA Astrophysics Data System (ADS)

    Lazar, B.; Stein, M.; Agnon, A.; Shaked, Y.

    2012-04-01

    The migration of Anatomically Modern Hominids (AMH) "out of Africa" is a fundamental problem in the study of human culture concerning that the route passed through the presently hyperarid deserts surrounding the Red Sea. Here, we outline the evidence for significant presence of freshwater in a well developed phreatic coastal aquifer along the Red Sea shores during the last interglacial period. The fringing coral reefs were tectonically uplifted through the freshwater lens resulting in extensive recrystallization of reef framework from the primary aragonite into calcite. We developed a novel open-system U-Th dating methodology that enabled us estimating two ages for the calcitic reef terrace: 1. The original age of the reef terrace, deposited at ~190 ka BP; and 2. the time of freshwater recrystallization (from the primary aragonite into calcite) at ~140 ka BP. The age of freshwater recrystallization is consistent with other geological lines of evidence placing the time of AMH migration "out of Africa" at the onset of the last interglacial. It is likely therefore that during that time the hyperarid Red Sea area was wetter than today facilitating the migration of AMH to Europe and Asia.

  15. White Oak Creek embayment sediment retention structure: The Oak Ridge model in action

    SciTech Connect

    Van Hoesen, S.D.; Kimmel, B.L.; Page, D.G.; Hudson, G.R.; Wilkerson, R.B.; Zocolla, M.; Kauschinger, J.L.

    1992-12-01

    White Oak Creek is the major surface-water drainage through the Department of Energy (DOE) Oak Ridge National Laboratory (ORNL). Samples taken from the lower portion of the creek revealed high levels of Cesium-137, and lower levels of Cobalt-60 in near-surface sediment. Other contaminants present in the sediment included: lead, mercury, chromium, and PCBS. In October 1990, DOE, US Environmental Protection Agency (EPA), and Tennessee Department of Environment and Conservation (DEC) agreed to initiate a time-critical removal action in accordance with Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) to prevent transport of the contaminated sediments into the Clinch River system. This paper discusses the environmental, regulatory, design, and construction issues that were encountered in conducting the remediation work.

  16. White Oak Creek embayment sediment retention structure: The Oak Ridge model in action

    SciTech Connect

    Van Hoesen, S.D.; Kimmel, B.L. ); Page, D.G.; Hudson, G.R. ); Wilkerson, R.B. ); Zocolla, M. . Nashville District); Kauschinger, J.L. )

    1992-01-01

    White Oak Creek is the major surface-water drainage through the Department of Energy (DOE) Oak Ridge National Laboratory (ORNL). Samples taken from the lower portion of the creek revealed high levels of Cesium-137, and lower levels of Cobalt-60 in near-surface sediment. Other contaminants present in the sediment included: lead, mercury, chromium, and PCBS. In October 1990, DOE, US Environmental Protection Agency (EPA), and Tennessee Department of Environment and Conservation (DEC) agreed to initiate a time-critical removal action in accordance with Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) to prevent transport of the contaminated sediments into the Clinch River system. This paper discusses the environmental, regulatory, design, and construction issues that were encountered in conducting the remediation work.

  17. Long-term effects of fire severity on oak-conifer dynamics in the southern Cascades.

    PubMed

    Cocking, Matthew I; Varner, J Morgan; Knapp, Eric E

    2014-01-01

    We studied vegetation composition and structure in a mixed conifer-oak ecosystem across a range of fire severity 10 years following wildfire. Sample plots centered on focal California black oaks (Quercus kelloggii) were established to evaluate oak and neighboring tree and shrub recovery across a gradient of fire severity in the southern Cascade Range, USA. Shrub and oak resprouting was strongest around focal oaks where conifer mortality was greatest. Linear modeling revealed negative relationships between California black oak sprout height or basal area and residual overstory tree survival, primarily white fir (Abies concolor). The two dominant competing species, California black oak and white fir, showed opposite responses to fire severity. Sprouting California black oak and associated shrubs dominated in severely burned areas, while surviving, non-sprouting white fir maintained dominance by its height advantage and shading effects in areas that burned with low fire severity. Our results indicate that high-severity fire promotes persistence and restoration of ecosystems containing resprouting species, such as California black oak, that are increasingly rare due to widespread fire exclusion in landscapes that historically experienced more frequent fire. We present a conceptual model based on our results and supported by a synthesis of postfire resprouting dynamics literature. Our results and conceptual model help illuminate long-term postfire vegetation responses and the potential ability of fire to catalyze formation of alternate vegetation community structures that may not be apparent in studies that evaluate postfire effects at shorter time-since-fire intervals or at coarser scales.

  18. A Crystallographic Study of Bright Far-Red Fluorescent Protein mKate Reveals pH-induced cis-trans Isomerization of the Chromophore

    SciTech Connect

    Pletnev, Sergei; Shcherbo, Dmitry; Chudakov, Dmitry M.; Pletneva, Nadezhda; Merzlyak, Ekaterina M.; Wlodawer, Alexander; Dauter, Zbigniew; Pletnev, Vladimir

    2008-11-03

    The far-red fluorescent protein mKate {lambda}{sup ex}, 588 nm; {lambda}{sub em}, 635 nm; chromophore-forming triad Met{sup 63}-Tyr{sup 64}-Gly{sup 65}, originating from wild-type red fluorescent progenitor eqFP578 (sea anemone Entacmaea quadricolor), is monomeric and characterized by the pronounced pH dependence of fluorescence, relatively high brightness, and high photostability. The protein has been crystallized at a pH ranging from 2 to 9 in three space groups, and four structures have been determined by x-ray crystallography at the resolution of 1.75--2.6 {angstrom}. The pH-dependent fluorescence of mKate has been shown to be due to reversible cis-trans isomerization of the chromophore phenolic ring. In the non-fluorescent state at pH 2.0, the chromophore of mKate is in the trans-isomeric form. The weakly fluorescent state of the protein at pH 4.2 is characterized by a mixture of trans and cis isomers. The chromophore in a highly fluorescent state at pH 7.0/9.0 adopts the cis form. Three key residues, Ser{sup 143}, Leu{sup 174}, and Arg{sup 197} residing in the vicinity of the chromophore, have been identified as being primarily responsible for the far-red shift in the spectra. A group of residues consisting of Val{sup 93}, Arg{sup 122}, Glu{sup 155}, Arg{sup 157}, Asp{sup 159}, His{sup 169}, Ile{sup 171}, Asn{sup 173}, Val{sup 192}, Tyr{sup 194}, and Val{sup 216}, are most likely responsible for the observed monomeric state of the protein in solution.

  19. The origin of the unusual Qy red shift in LH1-RC complexes from purple bacteria Thermochromatium tepidum as revealed by Stark absorption spectroscopy.

    PubMed

    Ma, Fei; Yu, Long-Jiang; Wang-Otomo, Zheng-Yu; van Grondelle, Rienk

    2015-12-01

    Native LH1-RC of photosynthetic purple bacteria Thermochromatium (Tch.) tepidum, B915, has an ultra-red BChl a Qy absorption. Two blue-shifted complexes obtained by chemical modification, B893 and B882, have increasing full widths at half maximum (FWHM) and decreasing transition dipole oscillator strength. 77K Stark absorption spectroscopy studies were employed for the three complexes, trying to understand the origin of the 915 nm absorption. We found that Tr(∆α) and |∆μ| of both Qy and carotenoid (Car) bands are larger than for other purple bacterial LH complexes reported previously. Moreover, the red shifts of the Qy bands are associated with (1) increasing Tr(∆α) and |∆μ| of the Qy band, (2) the red shift of the Car Stark signal and (3) the increasing |∆μ| of the Car band. Based on the results and the crystal structure, a combined effect of exciton-charge transfer (CT) states mixing, and inhomogeneous narrowing of the BChl a site energy is proposed to be the origin of the 915 nm absorption. CT-exciton state mixing has long been found to be the origin of strong Stark signal in LH1 and special pair, and the more extent of the mixing in Tch. tepidum LH1 is mainly the consequence of the shorter BChl-BChl distances. The less flexible protein structure results in a smaller site energy disorder (inhomogeneous narrowing), which was demonstrated to be able to influence |∆μ| and absorption.

  20. Red Sea

    Atmospheric Science Data Center

    2013-04-16

    article title:  The Red Sea     View Larger Image ... Imaging SpectroRadiometer (MISR) image of the Red Sea was acquired on August 13, 2000. Located between the East African coast and the Saudi Arabian peninsula, the Red Sea got its name because the blooms of a type of algae,  Trichodesmium ...

  1. Cross-reactions in the HLA system revealed by red blood cells expressing HLA determinants, with particular reference to cross-reaction between HLA-A2 and B17.

    PubMed

    Nordhagen, R

    1983-01-01

    Sera with cytotoxic and haemagglutinating activity towards HLA-A2/28 were also shown to react with red blood cells (RBC) expressing the HLA-B17 antigen determinant. Absorption procedures with white blood cells (WBC) indicated that this was due to an HLA-A2/B17 cross-reaction. Absorption experiments with some other sera which previously had shown cytotoxic and haemagglutinating activity towards different HLA specificities, revealed broad cross-reaction related to HLA-B locus antigens.

  2. Sulfate dry deposition to red oak and tulip poplar leaves

    SciTech Connect

    Vandenberg, J.J. ); Knoerr, K.R. )

    1988-01-01

    Measurement of rates of atmospheric sulfate dry deposition to vegetation is necessary to assess biophysical relationships. However, micrometeorological measurement techniques have stringent site and equipment requirements and direct estimation techniques have procedural and contamination difficulties. This paper describes the development and testing of a leaf washing technique to directly measure the rate of sulfate dry deposition to hardwood forest vegetation. The leaf washing technique was developed by comparing the rate of removal of sulfur dry deposited to leaf surfaces with the rate and extent of leaching from the internal sulfur pool.

  3. On the replacement of the red squirrel in Britain: a phytotoxic explanation.

    PubMed

    Kenward, R E; Holm, J L

    1993-03-22

    Diffusion modelling has shown that conservative demographic traits combined with feeding competition could explain red squirrel replacement by grey squirrels. We used field data from seven separate red and grey squirrel populations, in oak-hazel woods and Scots pines, to reject the hypothesis that red squirrel density and breeding is intrinsically poorer than that of grey squirrels. In oak-hazel woods, grey squirrel foraging, density and productivity were related to oak and acorn abundance. In contrast, red squirrels foraged where hazels were abundant; their relatively low density and breeding success were related to the abundance of hazel nuts. Red squirrels failed to exploit good acorn crops, although acorns were more abundant than hazels, but in Scots pines had densities and breeding success as high as grey squirrels in deciduous woods. Captive grey squirrels thrived on a diet of acorns, but red squirrels had a comparative digestive efficiency of only 59%, apparently because they were much less able than grey squirrels to neutralize acorn polyphenols. A model with simple competition for the autumn hazel crop, which was eaten by grey squirrels before the acorn crop, shows that red squirrels are unlikely to persist with grey squirrels in woods with more than 14% oak canopy. With oaks in most British deciduous woods giving grey squirrels a food refuge which red squirrels fail to exploit, replacement of red squirrels can be explained by feeding competition alone, exacerbated by the post-war decline in coppiced hazel. PMID:8097326

  4. The green valley is a red herring: Galaxy Zoo reveals two evolutionary pathways towards quenching of star formation in early- and late-type galaxies

    NASA Astrophysics Data System (ADS)

    Schawinski, Kevin; Urry, C. Megan; Simmons, Brooke D.; Fortson, Lucy; Kaviraj, Sugata; Keel, William C.; Lintott, Chris J.; Masters, Karen L.; Nichol, Robert C.; Sarzi, Marc; Skibba, Ramin; Treister, Ezequiel; Willett, Kyle W.; Wong, O. Ivy; Yi, Sukyoung K.

    2014-05-01

    We use SDSS+GALEX+Galaxy Zoo data to study the quenching of star formation in low-redshift galaxies. We show that the green valley between the blue cloud of star-forming galaxies and the red sequence of quiescent galaxies in the colour-mass diagram is not a single transitional state through which most blue galaxies evolve into red galaxies. Rather, an analysis that takes morphology into account makes clear that only a small population of blue early-type galaxies move rapidly across the green valley after the morphologies are transformed from disc to spheroid and star formation is quenched rapidly. In contrast, the majority of blue star-forming galaxies have significant discs, and they retain their late-type morphologies as their star formation rates decline very slowly. We summarize a range of observations that lead to these conclusions, including UV-optical colours and halo masses, which both show a striking dependence on morphological type. We interpret these results in terms of the evolution of cosmic gas supply and gas reservoirs. We conclude that late-type galaxies are consistent with a scenario where the cosmic supply of gas is shut off, perhaps at a critical halo mass, followed by a slow exhaustion of the remaining gas over several Gyr, driven by secular and/or environmental processes. In contrast, early-type galaxies require a scenario where the gas supply and gas reservoir are destroyed virtually instantaneously, with rapid quenching accompanied by a morphological transformation from disc to spheroid. This gas reservoir destruction could be the consequence of a major merger, which in most cases transforms galaxies from disc to elliptical morphology, and mergers could play a role in inducing black hole accretion and possibly active galactic nuclei feedback.

  5. Combined Analyses of the ITS Loci and the Corresponding 16S rRNA Genes Reveal High Micro- and Macrodiversity of SAR11 Populations in the Red Sea

    PubMed Central

    Ngugi, David Kamanda; Stingl, Ulrich

    2012-01-01

    Bacteria belonging to the SAR11 clade are among the most abundant prokaryotes in the pelagic zone of the ocean. 16S rRNA gene-based analyses indicate that they constitute up to 60% of the bacterioplankton community in the surface waters of the Red Sea. This extremely oligotrophic water body is further characterized by an epipelagic zone, which has a temperature above 24°C throughout the year, and a remarkable uniform temperature (∼22°C) and salinity (∼41 psu) from the mixed layer (∼200 m) to the bottom at over 2000 m depth. Despite these conditions that set it apart from other marine environments, the microbiology of this ecosystem is still vastly understudied. Prompted by the limited phylogenetic resolution of the 16S rRNA gene, we extended our previous study by sequencing the internal transcribed spacer (ITS) region of SAR11 in different depths of the Red Sea’s water column together with the respective 16S fragment. The overall diversity captured by the ITS loci was ten times higher than that of the corresponding 16S rRNA genes. Moreover, species estimates based on the ITS showed a highly diverse population of SAR11 in the mixed layer that became diminished in deep isothermal waters, which was in contrast to results of the related 16S rRNA genes. While the 16S rRNA gene-based sequences clustered into three phylogenetic subgroups, the related ITS fragments fell into several phylotypes that showed clear depth-dependent shifts in relative abundances. Blast-based analyses not only documented the observed vertical partitioning and universal co-occurrence of specific phylotypes in five other distinct oceanic provinces, but also highlighted the influence of ecosystem-specific traits (e.g., temperature, nutrient availability, and concentration of dissolved oxygen) on the population dynamics of this ubiquitous marine bacterium. PMID:23185592

  6. Identification of the Bombyx red egg gene reveals involvement of a novel transporter family gene in late steps of the insect ommochrome biosynthesis pathway.

    PubMed

    Osanai-Futahashi, Mizuko; Tatematsu, Ken-ichiro; Yamamoto, Kimiko; Narukawa, Junko; Uchino, Keiro; Kayukawa, Takumi; Shinoda, Tetsuro; Banno, Yutaka; Tamura, Toshiki; Sezutsu, Hideki

    2012-05-18

    Ommochromes are one of the major pigments involved in coloration of eggs, eyes, and body surface of insects. However, the molecular mechanisms of the final steps of ommochrome pigment synthesis have been largely unknown. The eggs of the silkworm Bombyx mori contain a mixture of ommochrome pigments, and exhibit a brownish lilac color. The recessive homozygous of egg and eye color mutant, red egg (re), whose eggs display a pale orange color instead of normal dark coloration, has been long suggested to have a defect in the biosynthesis of the final ommochrome pigments. Here, we identify the gene responsible for the re locus by positional cloning, mutant analysis, and RNAi experiments. In the re mutants, we found that a 541-bp transposable element is inserted into the ORF of BGIBMGA003497-1 (Bm-re) encoding a novel member of a major facilitator superfamily transporter, causing disruption of the splicing of exon 9, resulting in two aberrant transcripts with frameshifts yielding nonfunctional proteins lacking the C-terminal transmembrane domains. Bm-re function in pigmentation was confirmed by embryonic RNAi experiments. Homologs of the Bm-re gene were found in all insect genomes sequenced at present, except for 12 sequenced Drosophila genomes, which seemed to correlate with the previous studies that have demonstrated that eye ommochrome composition is different from other insects in several Dipterans. Knockdown of the Bm-re homolog by RNAi in the red flour beetle Tribolium castaneum caused adult compound eye coloration defects, indicating a conserved role in ommochrome pigment biosynthesis at least among holometabolous insects.

  7. Response of the Sensory animal-like cryptochrome aCRY to blue and red light as revealed by infrared difference spectroscopy.

    PubMed

    Spexard, Meike; Thöing, Christian; Beel, Benedikt; Mittag, Maria; Kottke, Tilman

    2014-02-18

    Cryptochromes act as blue light sensors in plants, insects, fungi, and bacteria. Recently, an animal-like cryptochrome (aCRY) was identified in the green alga Chlamydomonas reinhardtii by which gene expression is altered in response to not only blue light but also yellow and red light. This unique response of a flavoprotein in vivo has been attributed to the fact that the neutral radical of the flavin chromophore acts as dark form of the sensor, which absorbs in almost the entire visible spectral range (<680 nm). Here, we investigated light-induced processes in the protein moiety of full-length aCRY by UV-vis and Fourier transform infrared spectroscopy. Findings are compared to published results on the homologous (6-4) photolyases, DNA repair enzymes. The oxidized state of aCRY is converted to the neutral radical by blue light. The recovery is strongly dependent on pH and might be catalyzed by a conserved histidine of the (6-4)/clock cluster. The decay is independent of oxygen concentration in contrast to that of other cryptochromes and (6-4) photolyases. This blue light reaction of the oxidized flavin is not accompanied by any detectable changes in secondary structure, in agreement with a role in vivo of an unphysiological preactivation. In contrast, the conversion by red light of the neutral radical to the anionic fully reduced state proceeds with conformational changes in turn elements, which most probably constitute a part of the signaling process. These changes have not been detected in the corresponding transition of (6-4) photolyase, which points to a decisive difference between the sensor and the enzyme. PMID:24467183

  8. Identification of the Bombyx red egg gene reveals involvement of a novel transporter family gene in late steps of the insect ommochrome biosynthesis pathway.

    PubMed

    Osanai-Futahashi, Mizuko; Tatematsu, Ken-ichiro; Yamamoto, Kimiko; Narukawa, Junko; Uchino, Keiro; Kayukawa, Takumi; Shinoda, Tetsuro; Banno, Yutaka; Tamura, Toshiki; Sezutsu, Hideki

    2012-05-18

    Ommochromes are one of the major pigments involved in coloration of eggs, eyes, and body surface of insects. However, the molecular mechanisms of the final steps of ommochrome pigment synthesis have been largely unknown. The eggs of the silkworm Bombyx mori contain a mixture of ommochrome pigments, and exhibit a brownish lilac color. The recessive homozygous of egg and eye color mutant, red egg (re), whose eggs display a pale orange color instead of normal dark coloration, has been long suggested to have a defect in the biosynthesis of the final ommochrome pigments. Here, we identify the gene responsible for the re locus by positional cloning, mutant analysis, and RNAi experiments. In the re mutants, we found that a 541-bp transposable element is inserted into the ORF of BGIBMGA003497-1 (Bm-re) encoding a novel member of a major facilitator superfamily transporter, causing disruption of the splicing of exon 9, resulting in two aberrant transcripts with frameshifts yielding nonfunctional proteins lacking the C-terminal transmembrane domains. Bm-re function in pigmentation was confirmed by embryonic RNAi experiments. Homologs of the Bm-re gene were found in all insect genomes sequenced at present, except for 12 sequenced Drosophila genomes, which seemed to correlate with the previous studies that have demonstrated that eye ommochrome composition is different from other insects in several Dipterans. Knockdown of the Bm-re homolog by RNAi in the red flour beetle Tribolium castaneum caused adult compound eye coloration defects, indicating a conserved role in ommochrome pigment biosynthesis at least among holometabolous insects. PMID:22474291

  9. 77 FR 23506 - Notice of Inventory Completion: The Region of Three Oaks Museum, Three Oaks, MI

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-19

    ... National Park Service Notice of Inventory Completion: The Region of Three Oaks Museum, Three Oaks, MI AGENCY: National Park Service, Interior. ACTION: Notice. SUMMARY: The Region of Three Oaks Museum has... contact The Region of Three Oaks Museum. Repatriation of the human remains to the Indian tribe...

  10. Oak Ridge callibration recall program

    SciTech Connect

    Falter, K.G.; Wright, W.E.; Pritchard, E.W.

    1996-12-31

    A development effort was initiated within the Oak Ridge metrology community to address the need for a more versatile and user friendly tracking database that could be used across the Oak Ridge complex. This database, which became known as the Oak Ridge Calibration Recall Program (ORCRP), needed to be diverse enough for use by all three Oak Ridge facilities, as well as the seven calibration organizations that support them. Various practical functions drove the initial design of the program: (1) accessible by any user at any site through a multi-user interface, (2) real-time database that was able to automatically generate e-mail notices of due and overdue measuring and test equipment, (3) large memory storage capacity, and (4) extremely fast data access times. In addition, the program needed to generate reports on items such as instrument turnaround time, workload projections, and laboratory efficiency. Finally, the program should allow the calibration intervals to be modified, based on historical data. The developed program meets all of the stated requirements and is accessible over a network of computers running Microsoft Windows software.

  11. The morphology of the sub-giant branch and red clump reveal no sign of age spreads in intermediate-age clusters

    NASA Astrophysics Data System (ADS)

    Bastian, N.; Niederhofer, F.

    2015-04-01

    A recent surprise in stellar cluster research, made possible through the precision of Hubble Space Telescope photometry, was that some intermediate-age (1-2 Gyr) clusters in the Large and Small Magellanic Clouds have main-sequence turn-off (MSTO) widths that are significantly broader than would be expected for a simple stellar population (SSP). One interpretation of these extended MSTOs (eMSTOs) is that age spreads of the order of ˜500 Myr exist within the clusters, radically redefining our view of stellar clusters, which are traditionally thought of as single-age, single-metallicity stellar populations. Here we test this interpretation by studying other regions of the CMD that should also be affected by such large age spreads, namely the width of the sub-giant branch (SGB) and the red clump (RC). We study two massive clusters in the LMC that display the eMSTO phenomenon (NGC 1806 and NGC 1846) and show that both have SGB and RC morphologies that are in conflict with expectations if large age spreads exist within the clusters. We conclude that the SGB and RC widths are inconsistent with extended star formation histories within these clusters, hence age spreads are not likely to be the cause of the eMSTO phenomenon. Our results are in agreement with recent studies that also have cast doubt on whether large age spreads can exist in massive clusters; namely the failure to find age spreads in young massive clusters, a lack of gas/dust detected within massive clusters, and homogeneous abundances within clusters that exhibit the eMSTO phenomenon.

  12. Variability in splanchnic tissue oxygenation during preterm red blood cell transfusion given for symptomatic anaemia may reveal a potential mechanism of transfusion-related acute gut injury

    PubMed Central

    Bailey, Sean M.; Hendricks-Muñoz, Karen D.; Mally, Pradeep V.

    2015-01-01

    Background There is increasing evidence indicating an association between red blood cell (RBC) transfusions and necrotising enterocolitis (NEC) in preterm infants, especially late-onset NEC. This phenomenon is referred to as transfusion-related acute gut injury (TRAGI). One theory as to a pathophysiological mechanism is that transfusion may result in an ischemia-reperfusion injury to intestinal tissue. We tested the hypothesis that there is significantly greater variability during transfusion in splanchnic tissue oxygen saturation (SrSO2) than in cerebral tissue oxygen saturation (CrSO2). Materials and methods This was a prospective, observational study using near-infrared spectroscopy to monitor SrSO2 and CrSO2 in preterm neonates undergoing RBC transfusion for symptomatic anaemia. Mean, standard deviation, highest and lowest SrSO2 and CrSO2 values during each transfusion were determined. The greatest difference in SrSO2 and CrSO2 during each transfusion was calculated, along with the coefficient of variation. Results We studied 37 subjects. Throughout all transfusions, the mean SrSO2 was 45.6% ±13.8 and the mean CrSO2 was 65.4% ±6.9 (p<0.001). The variability of SrSO2 was significantly greater than that of CrSO2. Averaging data from all subjects, the greatest difference in SrSO2 was 43.8% ±13.4 compared with 23.3% ±7.6 for CrSO2 (p<0.001). The mean coefficient of variation in all transfusions was 20.5% for SrSO2 and 6.0% for CrSO2 (p<0.001). Increasing post-conceptional age did not affect SrSO2 variability (R2 =0.022; p=0.379), whereas CrSO2 variability during transfusion decreased with increasing post-conceptional age (R2=0.209; p=0.004). Discussion In preterm infants, there is a large degree of tissue oxygenation variability in splanchnic tissue during RBC transfusion and this does not change with increasing maturity. We speculate that these findings, combined with lower average tissue oxygenation, may demonstrate susceptibility of the preterm gut to TRAGI

  13. QTL analysis of a red junglefowl x White Leghorn intercross reveals trade-off in resource allocation between behavior and production traits.

    PubMed

    Schütz, Karin; Kerje, Susanne; Carlborg, Orjan; Jacobsson, Lina; Andersson, Leif; Jensen, Per

    2002-11-01

    Behaviors with high energetic costs may decrease in frequency in domestic animals as a response to selection for increased production. The aim of this study was to quantify production traits, foraging behavior, and social motivation in F2 progeny from a White Leghorn x red junglefowl intercross (n = 751-1046) and to perform QTL analyses on the behavioral traits. A foraging-social maze was used for behavioral testing, which consisted of four identical arms and a central box. In two arms there was ad libitum access to the birds' usual food, and in the other two there was novel food (sunflower seeds) mixed with cat litter. In one arm with each of the two food sources, social stimuli were simulated by the presence of a mirror. Each bird could therefore feed on novel or well known food either alone or in the perceived company of a conspecific. Egg production, sexual maturity (females), food intake, and growth were measured individually, and residual food intake and metabolic body weight were estimated using standard methods. A genome scan using 104 microsatellite markers was carried out to identify QTLs affecting behavioral traits. Phenotypic growth rates at different ages showed weak associations in both sexes. Sexual maturity and egg weight were not strongly correlated to growth, indicating that these traits are not genetically linked. Time spent in each arm and in the central part of the maze was analyzed using principal component analyses. Four principal components (PC) were extracted, each reflecting a pattern of behavior in the maze. Females with early onset of sexual maturity scored higher on the PC1 reflecting preference for free food without social stimuli, and females with higher egg production scored higher on the PC2 reflecting exploration. Males with an overall higher growth rate and higher residual food intake scored higher on the PC3, which possibly reflected fear of the test situation, and tended to score higher on the PC4 reflecting low

  14. Expression of regulatory neuropeptides in the hypothalamus of red deer (Cervus elaphus) reveals anomalous relationships in the seasonal control of appetite and reproduction.

    PubMed

    Barrell, G K; Ridgway, M J; Wellby, M; Pereira, A; Henry, B A; Clarke, I J

    2016-04-01

    Red deer are seasonal with respect to reproduction and food intake, so we tested the hypothesis that their brains would show seasonal changes in numbers of cells containing hypothalamic neuropeptides that regulate these functions. We examined the brains of male and female deer in non-breeding and breeding seasons to quantify the production of kisspeptin, gonadotropin inhibitory hormone (GnIH), neuropeptide Y (NPY) and γ-melanocyte stimulating hormone (γ-MSH - an index of pro-opiomelanocortin production), using immunohistochemistry. These neuropeptides are likely to be involved in the regulation of reproductive function and appetite. During the annual breeding season there were more cells producing kisspeptin in the arcuate nucleus of the hypothalamus than during the non-breeding season in males and females whereas there was no seasonal difference in the expression of GnIH. There were more cells producing the appetite stimulating peptide, NPY, in the arcuate/median eminence regions of the hypothalamus of females during the non-breeding season whereas the levels of an appetite suppressing peptide, γ-MSH, were highest in the breeding season. Male deer brains exhibited the converse, with NPY cell numbers highest in the breeding season and γ-MSH levels highest in the non-breeding season. These results support a role for kisspeptin as an important stimulatory regulator of seasonal breeding in deer, as in other species, but suggest a lack of involvement of GnIH in the seasonality of reproduction in deer. In the case of appetite regulation, the pattern exhibited by females for NPY and γ-MSH was as expected for the breeding and non-breeding seasons, based on previous studies of these peptides in sheep and the seasonal cycle of appetite reported for various species of deer. An inverse result in male deer most probably reflects the response of appetite regulating cells to negative energy balance during the mating season. Differences between the sexes in the seasonal

  15. Large drought-induced variations in oak leaf volatile organic compound emissions during PINOT NOIR 2012

    SciTech Connect

    Geron, Chris; Gu, Lianhong; Daly, Ryan; Harley, Peter; Rasmussen, Rei; Seco, Roger; Guenther, Alex; Karl, Thomas

    2015-12-17

    Here, leaf-level isoprene and monoterpene emissions were collected and analyzed from five of the most abundant oak (Quercus) species in Central Missouri's Ozarks Region in 2012 during PINOT NOIR (Particle Investigations at a Northern Ozarks Tower – NOx, Oxidants, Isoprene Research). June measurements, prior to the onset of severe drought, showed isoprene emission rates and leaf temperature responses similar to those previously reported in the literature and used in Biogenic Volatile Organic Compound (BVOC) emission models. During the peak of the drought in August, isoprene emission rates were substantially reduced, and response to temperature was dramatically altered, especially for the species in the red oak subgenus (Erythrobalanus).

  16. Oak Ridge National Laboratory Review

    SciTech Connect

    Krause, C.; Pearce, J.; Zucker, A.

    1992-01-01

    This report presents brief descriptions of the following programs at Oak Ridge National Laboratory: The effects of pollution and climate change on forests; automation to improve the safety and efficiency of rearming battle tanks; new technologies for DNA sequencing; ORNL probes the human genome; ORNL as a supercomputer research center; paving the way to superconcrete made with polystyrene; a new look at supercritical water used in waste treatment; and small mammals as environmental monitors.

  17. Environmental drivers of ectomycorrhizal communities in Europe's temperate oak forests.

    PubMed

    Suz, Laura M; Barsoum, Nadia; Benham, Sue; Dietrich, Hans-Peter; Fetzer, Karl Dieter; Fischer, Richard; García, Paloma; Gehrman, Joachim; Kristöfel, Ferdinand; Manninger, Miklós; Neagu, Stefan; Nicolas, Manuel; Oldenburger, Jan; Raspe, Stephan; Sánchez, Gerardo; Schröck, Hans Werner; Schubert, Alfred; Verheyen, Kris; Verstraeten, Arne; Bidartondo, Martin I

    2014-11-01

    Ectomycorrhizal fungi are major ecological players in temperate forests, but they are rarely used in measures of forest condition because large-scale, high-resolution, standardized and replicated belowground data are scarce. We carried out an analysis of ectomycorrhizas at 22 intensively monitored long-term oak plots, across nine European countries, covering complex natural and anthropogenic environmental gradients. We found that at large scales, mycorrhizal richness and evenness declined with decreasing soil pH and root density, and with increasing atmospheric nitrogen deposition. Shifts in mycorrhizas with different functional traits were detected; mycorrhizas with structures specialized for long-distance transport related differently to most environmental variables than those without. The dominant oak-specialist Lactarius quietus, with limited soil exploration abilities, responds positively to increasing nitrogen inputs and decreasing pH. In contrast, Tricholoma, Cortinarius and Piloderma species, with medium-distance soil exploration abilities, show a consistently negative response. We also determined nitrogen critical loads for moderate (9.5-13.5 kg N/ha/year) and drastic (17 kg N/ha/year) changes in belowground mycorrhizal root communities in temperate oak forests. Overall, we generated the first baseline data for ectomycorrhizal fungi in the oak forests sampled, identified nitrogen pollution as one of their major drivers at large scales and revealed fungi that individually and/or in combination with others can be used as belowground indicators of environmental characteristics.

  18. Red Sky with Red Mesa

    ScienceCinema

    None

    2016-07-12

    The Red Sky/Red Mesa supercomputing platform dramatically reduces the time required to simulate complex fuel models, from 4-6 months to just 4 weeks, allowing researchers to accelerate the pace at which they can address these complex problems. Its speed also reduces the need for laboratory and field testing, allowing for energy reduction far beyond data center walls.

  19. Red Sky with Red Mesa

    SciTech Connect

    2011-04-14

    The Red Sky/Red Mesa supercomputing platform dramatically reduces the time required to simulate complex fuel models, from 4-6 months to just 4 weeks, allowing researchers to accelerate the pace at which they can address these complex problems. Its speed also reduces the need for laboratory and field testing, allowing for energy reduction far beyond data center walls.

  20. Red Capes, Red Herrings, and Red Flags.

    ERIC Educational Resources Information Center

    Fiske, Donald W.

    The argument that the personality structures obtained from retrospective ratings reflect semantic similarity structures has been as provocative as a red cape in the bull ring. High congruence between those two kinds of structures seems well established. What is less clear is how and why those structures differ from that for immediate judgments of…

  1. Separating foliar physiology from morphology reveals the relative roles of vertically structured transpiration factors within red maple crowns and limitations of larger scale models.

    PubMed

    Bauerle, William L; Bowden, Joseph D

    2011-08-01

    A spatially explicit mechanistic model, MAESTRA, was used to separate key parameters affecting transpiration to provide insights into the most influential parameters for accurate predictions of within-crown and within-canopy transpiration. Once validated among Acer rubrum L. genotypes, model responses to different parameterization scenarios were scaled up to stand transpiration (expressed per unit leaf area) to assess how transpiration might be affected by the spatial distribution of foliage properties. For example, when physiological differences were accounted for, differences in leaf width among A. rubrum L. genotypes resulted in a 25% difference in transpiration. An in silico within-canopy sensitivity analysis was conducted over the range of genotype parameter variation observed and under different climate forcing conditions. The analysis revealed that seven of 16 leaf traits had a ≥5% impact on transpiration predictions. Under sparse foliage conditions, comparisons of the present findings with previous studies were in agreement that parameters such as the maximum Rubisco-limited rate of photosynthesis can explain ∼20% of the variability in predicted transpiration. However, the spatial analysis shows how such parameters can decrease or change in importance below the uppermost canopy layer. Alternatively, model sensitivity to leaf width and minimum stomatal conductance was continuous along a vertical canopy depth profile. Foremost, transpiration sensitivity to an observed range of morphological and physiological parameters is examined and the spatial sensitivity of transpiration model predictions to vertical variations in microclimate and foliage density is identified to reduce the uncertainty of current transpiration predictions.

  2. Birthmarks - red

    MedlinePlus

    Strawberry mark; Vascular skin changes; Angioma cavernosum; Capillary hemangioma; Hemangioma simplex ... There are two main categories of birthmarks: Red birthmarks are ... are called vascular birthmarks. Pigmented birthmarks are areas ...

  3. Oak decline analyzed using intraannual radial growth indices, δ(13)C series and climate data from a rural hemiboreal landscape in southwesternmost Finland.

    PubMed

    Helama, S; Läänelaid, A; Raisio, J; Mäkelä, H M; Hilasvuori, E; Jungner, H; Sonninen, E

    2014-08-01

    Decline of pedunculate oak (Quercus robur L.) was studied in SW Finland. This is a region where the species is growing near its northern distributional limit globally and a recent decline of mature trees has been described regionally. Tree rings of declining oaks were compared to the chronologies of healthy and oaks that died, climate series and stable isotope discrimination of carbon (δ(13)C) of comparable mature trees. The radial growth (earlywood, latewood, and annual ring width) of declining oaks was clearly deteriorated in comparison to healthy oaks, but recuperated, compared to oaks that died, through all index types. Comparison of climate relationships between growth and δ(13)C, expected to reflect oaks' intrinsic water use efficiency, indicated enhancing resistance to droughts through the growing season. The growth and the climatic growth response was differentiated in declining oaks as compared with the healthy and oaks that died revealing that: (1) declining oaks exhibited decreasing competitive strength as indicated by reduced overall growth relative to healthy oaks, (2) the growth of declining oaks was more sensitive to winter conditions, but less restricted by summer droughts than the growth of other oaks, and (3) healthy oaks were seen having benefitted from the ongoing lengthening of the growing season. Lack of correlativity between growth and δ(13)C became evident as their responses to temperature and precipitation variations deviated drastically during the other but summer months. Our results indicate that several different ecological factors, rather than a single climatic factor (e.g., drought), are controlling the oak decline in the studied environment.

  4. Oak decline analyzed using intraannual radial growth indices, δ(13)C series and climate data from a rural hemiboreal landscape in southwesternmost Finland.

    PubMed

    Helama, S; Läänelaid, A; Raisio, J; Mäkelä, H M; Hilasvuori, E; Jungner, H; Sonninen, E

    2014-08-01

    Decline of pedunculate oak (Quercus robur L.) was studied in SW Finland. This is a region where the species is growing near its northern distributional limit globally and a recent decline of mature trees has been described regionally. Tree rings of declining oaks were compared to the chronologies of healthy and oaks that died, climate series and stable isotope discrimination of carbon (δ(13)C) of comparable mature trees. The radial growth (earlywood, latewood, and annual ring width) of declining oaks was clearly deteriorated in comparison to healthy oaks, but recuperated, compared to oaks that died, through all index types. Comparison of climate relationships between growth and δ(13)C, expected to reflect oaks' intrinsic water use efficiency, indicated enhancing resistance to droughts through the growing season. The growth and the climatic growth response was differentiated in declining oaks as compared with the healthy and oaks that died revealing that: (1) declining oaks exhibited decreasing competitive strength as indicated by reduced overall growth relative to healthy oaks, (2) the growth of declining oaks was more sensitive to winter conditions, but less restricted by summer droughts than the growth of other oaks, and (3) healthy oaks were seen having benefitted from the ongoing lengthening of the growing season. Lack of correlativity between growth and δ(13)C became evident as their responses to temperature and precipitation variations deviated drastically during the other but summer months. Our results indicate that several different ecological factors, rather than a single climatic factor (e.g., drought), are controlling the oak decline in the studied environment. PMID:24729178

  5. Validation of a mass spectrometry method to quantify oak ellagitannins in wine samples.

    PubMed

    García-Estévez, Ignacio; Escribano-Bailón, M Teresa; Rivas-Gonzalo, Julián C; Alcalde-Eon, Cristina

    2012-02-15

    Detection and individual quantification of oak wood ellagitannins in oak barrel aged red wine samples are difficult mainly due to their low levels and the similarity between their structures. In this work, a quantification method using mass spectrometry has been developed and validated to quantify wine ellagitannins after sample fractionation with a previously reported method. The use of an internal standard is a requirement to correct mass signal variability. (-)-Gallocatechin, among the different tested compounds, was the only one that proved to be a suitable internal standard making possible the accurate and individual quantification of the main oak wood ellagitannins. The developed methodology has been used to detect and quantify these ellagitannins in different Spanish commercial wines, proving its usefulness.

  6. Nitrogen deposition potentially contributes to oak regeneration failure in the Midwestern temperate forests of the USA.

    PubMed

    BassiriRad, Hormoz; Lussenhop, John F; Sehtiya, Harbans L; Borden, Kara K

    2015-01-01

    We conducted a 7-year field study at two oak-dominated forest sites which differ in their atmospheric N deposition to test the hypothesis that red oak regeneration failure in the upper Midwestern US forests, at least in part, results from increased N load. The sites are located in Swallow Cliffs (SC) in Cook County, Illinois, and Indiana Dunes National Lakeshore (IDNL) in Porter County, Indiana. Annual wet NO3(-) deposition for the 22 years immediately prior to the experiments was significantly higher in IDNL than in the SC site. Results from common garden experiments showed that oak seedling biomass was 60% lower at IDNL compared with SC, but there was little site effect on growth of maple seedlings. Experimental N addition also resulted in a 45% decrease in the total biomass of the oak seedlings at SC, but had no significant effect on the biomass at IDNL. Maple seedlings responded little to experimental fertilization. The growth rate of mature oak trees was also lower at IDNL but to a much smaller extent than that of seedlings. Maple trees did not significantly differ between sites. We conclude that: (1) chronic N load adversely affects seedling performance of red oak, but not sugar maple, in these temperate forests; and (2) the seedling establishment phase rather than the adult tree is the likely target stage for this adverse effect of N loading. The exact mechanisms for the differential effects of N on these co-occurring species are not clear, but different plasticity in fractional biomass and N allocation to the leaves might be involved. PMID:25407618

  7. Overseas Varietal Analysis 2010 Crop Soft Red Winter Wheat

    Technology Transfer Automated Retrieval System (TEKTRAN)

    The 2010 U.S. Wheat Associates Overseas Varietal Analysis project evaluated ten soft red winter wheat varieties: Jamestown, Merl and Shirley from Virginia; Coker 9553 and Oakes from North Carolina; Baldwin from Georgia; Renegade and DK 9577 from Arkansas; USG 3555 from Tennessee; and, Malabar from O...

  8. Emergency preparedness at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Skipper, M.N.

    1990-03-01

    Emergency preparedness for industry was commonly believed to be an essential responsibility on the part of management. Therefore, this study was conducted to research and accumulate information and data on emergency preparedness at Oak Ridge National Laboratory (ORNL). The objective of this study was to conduct a thorough evaluation of emergency preparedness knowledge among employees to determine if they were properly informed or if they needed more training. Also, this study was conducted to provide insight to management as to what their responsibility was concerning this training. To assess employee emergency preparedness knowledge, a questionnaire was developed and administered to 100 employees at ORNL. The data was analyzed using frequencies and percentages of response and was displayed through the use of graphs within the report. 22 refs., 22 figs.

  9. Integrated transcriptomics and metabolomics decipher differences in the resistance of pedunculate oak to the herbivore Tortrix viridana L.

    PubMed Central

    2013-01-01

    Background The interaction between insect pests and their host plants is a never-ending race of evolutionary adaption. Plants have developed an armament against insect herbivore attacks, and attackers continuously learn how to address it. Using a combined transcriptomic and metabolomic approach, we investigated the molecular and biochemical differences between Quercus robur L. trees that resisted (defined as resistant oak type) or were susceptible (defined as susceptible oak type) to infestation by the major oak pest, Tortrix viridana L. Results Next generation RNA sequencing revealed hundreds of genes that exhibited constitutive and/or inducible differential expression in the resistant oak compared to the susceptible oak. Distinct differences were found in the transcript levels and the metabolic content with regard to tannins, flavonoids, and terpenoids, which are compounds involved in the defence against insect pests. The results of our transcriptomic and metabolomic analyses are in agreement with those of a previous study in which we showed that female moths prefer susceptible oaks due to their specific profile of herbivore-induced volatiles. These data therefore define two oak genotypes that clearly differ on the transcriptomic and metabolomic levels, as reflected by their specific defensive compound profiles. Conclusions We conclude that the resistant oak type seem to prefer a strategy of constitutive defence responses in contrast to more induced defence responses of the susceptible oaks triggered by feeding. These results pave the way for the development of biomarkers for an early determination of potentially green oak leaf roller-resistant genotypes in natural pedunculate oak populations in Europe. PMID:24160444

  10. Hydroforming Applications at Oak Ridge

    SciTech Connect

    bird, e.l.; ludtka, g.m.

    1999-03-10

    Hydroforming technology is a robust forming process that produces components with high precision and complexity. The goal of this paper is to present a brief description of the sheet hydroforming process with respect to the authors' experience and capabilities. Following the authors' discussion of the sheet-metal forming application, the tubular hydroforming process is described in the context of one of our technology development programs with an automotive industrial partner. After that is a summary of the tubular hydroforming advisor (expert system) development activity, which was a significant part of this overall program based on previous experience in developing a design and manufacturing support hydroforming advisor for the Oak Ridge Y-12 Plant's weapons-component manufacturing needs. Therefore, this paper is divided into three sections: (1) Hydroforming of Stainless Steel Parts, (2) Tubular Hydroforming, and (3) Components of a Tubular Hydroforming Advisor.

  11. Coumarins and phenolic fingerprints of oak and Brazilian woods extracted by sugarcane spirit.

    PubMed

    da Silva, Alexandre Ataide; do Nascimento, Eduardo Sanches Pereira; Cardoso, Daniel Rodrigues; Franco, Douglas Wagner

    2009-11-01

    A total of 25 sugarcane spirit extracts of six different Brazilian woods and oak, commonly used by cooperage industries for aging cachaça, were analyzed for the presence of 14 phenolic compounds (ellagic acid, gallic acid, vanillin, syringaldehyde, synapaldehyde, coniferaldehyde, vanillic acid, syringic acid, quercetin, trans-resveratrol, catechin, epicatechin, eugenol, and myricetin) and two coumarins (scopoletin and coumarin) by HPLC-DAD-fluorescence and HPLC-ESI-MS(n). Furthermore, an HPLC-DAD chromatographic fingerprint was build-up using chemometric analysis based on the chromatographic elution profiles of the extracts monitored at 280 nm. Major components identified and quantified in Brazilian wood extracts were coumarin, ellagic acid, and catechin, whereas oak extracts shown a major contribution of catechin, vanillic acid, and syringaldehyde. The main difference observed among oak and Brazilian woods remains in the concentration of coumarin, catechin, syringaldehyde, and coniferaldehyde. The chemometric analysis of the quantitative profile of the 14 phenolic compounds and two coumarins in the wood extracts provides a differentiation between the Brazilian wood and oak extracts. The chromatographic fingerprint treated by multivariate analysis revealed significant differences among Brazilian woods themselves and oak, clearly defining six groups of wood extracts: (i) oak extracts, (ii) jatobá extracts, (iii) cabreúva-parda extracts, (iv) amendoim extracts, (v) canela-sassafrás extracts and (vi) pequi extracts.

  12. Coumarins and phenolic fingerprints of oak and Brazilian woods extracted by sugarcane spirit.

    PubMed

    da Silva, Alexandre Ataide; do Nascimento, Eduardo Sanches Pereira; Cardoso, Daniel Rodrigues; Franco, Douglas Wagner

    2009-11-01

    A total of 25 sugarcane spirit extracts of six different Brazilian woods and oak, commonly used by cooperage industries for aging cachaça, were analyzed for the presence of 14 phenolic compounds (ellagic acid, gallic acid, vanillin, syringaldehyde, synapaldehyde, coniferaldehyde, vanillic acid, syringic acid, quercetin, trans-resveratrol, catechin, epicatechin, eugenol, and myricetin) and two coumarins (scopoletin and coumarin) by HPLC-DAD-fluorescence and HPLC-ESI-MS(n). Furthermore, an HPLC-DAD chromatographic fingerprint was build-up using chemometric analysis based on the chromatographic elution profiles of the extracts monitored at 280 nm. Major components identified and quantified in Brazilian wood extracts were coumarin, ellagic acid, and catechin, whereas oak extracts shown a major contribution of catechin, vanillic acid, and syringaldehyde. The main difference observed among oak and Brazilian woods remains in the concentration of coumarin, catechin, syringaldehyde, and coniferaldehyde. The chemometric analysis of the quantitative profile of the 14 phenolic compounds and two coumarins in the wood extracts provides a differentiation between the Brazilian wood and oak extracts. The chromatographic fingerprint treated by multivariate analysis revealed significant differences among Brazilian woods themselves and oak, clearly defining six groups of wood extracts: (i) oak extracts, (ii) jatobá extracts, (iii) cabreúva-parda extracts, (iv) amendoim extracts, (v) canela-sassafrás extracts and (vi) pequi extracts. PMID:20029907

  13. An Account of Oak Ridge National Laboratory's Thirteen Research Reactors

    SciTech Connect

    Rosenthal, Murray Wilford

    2009-08-01

    The Oak Ridge National Laboratory has built and operated 13 nuclear reactors in its 66-year history. The first was the graphite reactor, the world's first operational nuclear reactor, which served as a plutonium production pilot plant during World War II. It was followed by two aqueous-homogeneous reactors and two red-hot molten-salt reactors that were parts of power-reactor development programs and by eight others designed for research and radioisotope production. One of the eight was an all-metal fast burst reactor used for health physics studies. All of the others were light-water cooled and moderated, including the famous swimming-pool reactor that was copied dozens of times around the world. Two of the reactors were hoisted 200 feet into the air to study the shielding needs of proposed nuclear-powered aircraft. The final reactor, and the only one still operating today, is the High Flux Isotope Reactor (HFIR) that was built particularly for the production of californium and other heavy elements. With the world's highest flux and recent upgrades that include the addition of a cold neutron source, the 44-year-old HFIR continues to be a valuable tool for research and isotope production, attracting some 500 scientific visitors and guests to Oak Ridge each year. This report describes all of the reactors and their histories.

  14. Volatile compounds and sensorial characterization of wines from four Spanish denominations of origin, aged in Spanish Rebollo (Quercus pyrenaica Willd.) oak wood barrels.

    PubMed

    Fernández de Simón, Brígida; Cadahía, Estrella; Sanz, Miriam; Poveda, Pilar; Perez-Magariño, Silvia; Ortega-Heras, Miriam; González-Huerta, Carlos

    2008-10-01

    The evolution of almost 40 oak-related volatile compounds and the sensorial characteristics of red wines from four Spanish denominations of origin (DOs) (Bierzo, Toro, Ribera de Duero, and Rioja) during aging in barrels made of Rebollo oak wood, Quercus pyrenaica, were studied and compared to the same wines aged in American and French oak barrels. Each oak wood added unique and special characteristics to the wine, and in addition, each wine showed a different ability to extract the compounds, which result in these characteristics from the oak wood. In general, wines aged in Q. pyrenaica wood were characterized by high levels of eugenol, guaiacol, and other volatile phenols. In regards to compounds like cis-whiskylactone or maltol, the behavior of this wood is very similar to that of American oaks. When considering phenolic aldehydes and ketones, the levels of these compounds are intermediate between those of French and American woods and depend greatly on the type of wine. The type of oak, on the other hand, does not affect the chromatic characteristics of the wines. In sensory analysis, the biggest differences are found in the olfactory phase. Among the four DOs studied, wine aged in Q. pyrenaica presented the highest notes of wood, with more aromas of roasting, toasting, milky coffee, spices, or wine-wood interactions. The wines aged in barrels made of Q. pyrenaica wood were highly regarded, and preference was shown for them over those same wines when they had been aged in barrels of American or French oak.

  15. Microbial diversity and metabolite composition of Belgian red-brown acidic ales.

    PubMed

    Snauwaert, Isabel; Roels, Sanne P; Van Nieuwerburg, Filip; Van Landschoot, Anita; De Vuyst, Luc; Vandamme, Peter

    2016-03-16

    Belgian red-brown acidic ales are sour and alcoholic fermented beers, which are produced by mixed-culture fermentation and blending. The brews are aged in oak barrels for about two years, after which mature beer is blended with young, non-aged beer to obtain the end-products. The present study evaluated the microbial community diversity of Belgian red-brown acidic ales at the end of the maturation phase of three subsequent brews of three different breweries. The microbial diversity was compared with the metabolite composition of the brews at the end of the maturation phase. Therefore, mature brew samples were subjected to 454 pyrosequencing of the 16S rRNA gene (bacteria) and the internal transcribed spacer region (yeasts) and a broad range of metabolites was quantified. The most important microbial species present in the Belgian red-brown acidic ales investigated were Pediococcus damnosus, Dekkera bruxellensis, and Acetobacter pasteurianus. In addition, this culture-independent analysis revealed operational taxonomic units that were assigned to an unclassified fungal community member, Candida, and Lactobacillus. The main metabolites present in the brew samples were L-lactic acid, D-lactic acid, and ethanol, whereas acetic acid was produced in lower quantities. The most prevailing aroma compounds were ethyl acetate, isoamyl acetate, ethyl hexanoate, and ethyl octanoate, which might be of impact on the aroma of the end-products. PMID:26802571

  16. The oak wilt enigma: perspectives from the Texas epidemic.

    PubMed

    Appel, D N

    1995-01-01

    Ceratocystis fagacearum (Bretz) Hunt, the oak wilt pathogen, is currently causing massivel osses of semievergreen live oaks (Quercus fusiformis Small and Q. virginiana Mill.) in central Texas. Given the relatively limited oak mortality caused by C. fagacearum in the deciduous forests of the North Central, Midwestern, and Mid-Atlantic United States, this Texas epidemic was not anticipated. The intensity of oak wilt in Texas is attributed to a number of factors related to host characteristics and the ability of the pathogen to adapt to limiting environmental conditions. Oak wilt management in semievergreen oaks requires considerable revision of the control techniques previously designed for deciduous oaks. The Texas oak wilt epidemic provides a new perspective from which to evaluate questions concerning oak wilt, including the origins of the pathogen as well as the potential for future losses in unaffected oak forests.

  17. Poison oak rash on the arm (image)

    MedlinePlus

    ... appearance of poison oak dermatitis. Note the typical linear streaks produced either by scratching or brushing against the plant. (Image courtesy of the Centers for Disease Control and Prevention.)

  18. Oak Ridge Reservation environmental report for 1989

    SciTech Connect

    Jacobs, V.A.; Wilson, A.R.

    1990-10-01

    This two-volume report, the Oak Ridge Reservation Environmental Report for 1989, is the nineteenth in an annual series that began in 1971. It reports the results of a comprehensive, year-round program to monitor the impact of operations at the three major US Department of Energy (DOE) production and research installations in Oak Ridge on the immediate areas' and surrounding region's groundwater and surface waters, soil, air quality, vegetation and wildlife, and through these multiple and varied pathways, the resident human population. Information is presented for the environmental monitoring Quality Assurance (QA) Program, audits and reviews, waste management activities, land special environmental studies. Data are included for the Oak Ridge Y-12 Plant, Oak Ridge National Laboratory (ORNL), and Oak Ridge Gaseous Diffusion Plant (ORGDP). Volume 1 presents narratives, summaries, and conclusions based on environmental monitoring at the three DOE installations and in the surrounding environs during calendar year (CY) 1989. Volume 1 is intended to be a stand-alone'' report about the Oak Ridge Reservation (ORR) for the reader who does not want an in-depth review of 1989 data. Volume 2 presents the detailed data from which these conclusions have been drawn and should be used in conjunction with Volume 1.

  19. Woodland Patch Dynamics Affected by Oak Growth: Fire, Climate, and Human Influences

    NASA Astrophysics Data System (ADS)

    Murray, D. B.; White, J. D.

    2010-12-01

    Woodland fragmentation and aggregation occur due to impacts of fire, climate, and human factors. In our study we investigate the growth response of a deciduous oak species, Quercus buckleyii (Texas Red Oak) within a juniper-dominated woodland. This species may be a sentinel species for woodland patch developmental processes that could be used as a proxy for woodland patch contraction and expansion events. In this study, we used tree rings, fire scar, and multi-temporal aerial photographic data to assess response of oaks to disturbance type and resultant impact on woodland patches. Three hundred and seventy tree slabs from downed and dead red oaks were collected in the Balcones National Wildlife Refuge outside Austin, Texas. We analyzed tree rings from these slabs to determine recruitment date, annual ring width, and where evident, time of fire. Changes in tree ring widths associated with canopy openings were derived from neighborhood analysis of digital aerial photos from 1939, 1951, 1964, 1980, 1995, and 2004. Results indicated that red oaks increased radial growth following fire. Analysis of canopy openings associated with the aerial photographs showed that the oak species did not respond to canopy openings with increased radial growth as predicted by gap-phase dynamics. Climate impacted average radial ring growth as demonstrated by comparison with the Palmer Drought Severity and Nino 3 Index values (p = .56). Given that radial growth is influenced by both fire and climate, we explored the possibility that dramatic climate and related disturbance events (drought and high occurrence of fire) of the 1950’s created a possible ecological regime shift. Changes in both index value variance and disturbance frequency were noted during the 1950’s. These results were confirmed by landscape analysis of disturbance patches identified from the historical photographs which show cutting and burning occurred with the highest frequency between 1951 and 1964 with 70% of the

  20. Phenolic compounds and sensorial characterization of wines aged with alternative to barrel products made of Spanish oak wood (Quercus pyrenaica Willd.).

    PubMed

    Gallego, L; Del Alamo, M; Nevares, I; Fernández, J A; Fernández de Simón, B; Cadahía, E

    2012-04-01

    Wood of Quercus pyrenaica has suitable properties for the wine ageing process. However, the forest available for the barrel making from this particular type of tree is very limited. Nevertheless, it is highly advisable to use this kind of wood in order to manufacture alternative oak products. This study presents the results of ageing the same red wine using different pieces of wood (chips and staves) of Spanish oak (Q. pyrenaica), American oak (Quercus alba) and French oak (Quercus petraea) in conjunction with small, controlled amounts of oxygen. In addition, the phenolic parameters, colour and sensory analysis point out that wines aged with Q. pyrenaica pieces have similar enological characteristics to those aged with American or French oak pieces of wood (chips and staves). Furthermore, the total oxygen consumed and its relation with sensory properties also has been studied in this article in order to know how the oxygen behaves in these processes. Besides, it is going to put forward the fact that chips and staves from Q. pyrenaica oak are suitable for the ageing of red wines and better considered than American or French ones, showing higher aromatic intensity, complexity, woody, balsamic and cocoa. Finally, the tasters valued highly the wines with staves, pointing out its flavour and roundness in mouth.

  1. Red ginseng and cancer treatment.

    PubMed

    Wang, Chong-Zhi; Anderson, Samantha; DU, Wei; He, Tong-Chuan; Yuan, Chun-Su

    2016-01-01

    The ginseng family, including Panax ginseng (Asian ginseng), Panax quinquefolius (American ginseng), and Panax notoginseng (notoginseng), is commonly used herbal medicine. White ginseng is prepared by air-drying after harvest, while red ginseng is prepared by a steaming or heating process. The anticancer activity of red ginseng is significantly increased, due to the production of active anticancer ginsenosides during the steaming treatment, compared with that of white ginseng. Thus far, anticancer studies have been mostly focused on Asian ginseng. In this article, we review the research progress made in the anticancer activities of red Asian ginseng, red American ginseng and red notoginseng. The major anticancer mechanisms of red ginseng compounds include cell cycle arrest, induction of apoptosis/paraptosis, and inhibition of angiogenesis. The structure-function relationship analysis has revealed that the protopanaxadiol group ginsenosides have more potent effects than the protopanaxatriol group. Sugar molecules in ginsenosides inversely impact the antiproliferative potential of these compounds. In addition, ginsenoside stereoselectivity and double bond position also influence the anticancer activity. Future studies should focus on characterizing active red ginseng derivatives as potential anticancer drugs. PMID:26850342

  2. Red ginseng and cancer treatment.

    PubMed

    Wang, Chong-Zhi; Anderson, Samantha; DU, Wei; He, Tong-Chuan; Yuan, Chun-Su

    2016-01-01

    The ginseng family, including Panax ginseng (Asian ginseng), Panax quinquefolius (American ginseng), and Panax notoginseng (notoginseng), is commonly used herbal medicine. White ginseng is prepared by air-drying after harvest, while red ginseng is prepared by a steaming or heating process. The anticancer activity of red ginseng is significantly increased, due to the production of active anticancer ginsenosides during the steaming treatment, compared with that of white ginseng. Thus far, anticancer studies have been mostly focused on Asian ginseng. In this article, we review the research progress made in the anticancer activities of red Asian ginseng, red American ginseng and red notoginseng. The major anticancer mechanisms of red ginseng compounds include cell cycle arrest, induction of apoptosis/paraptosis, and inhibition of angiogenesis. The structure-function relationship analysis has revealed that the protopanaxadiol group ginsenosides have more potent effects than the protopanaxatriol group. Sugar molecules in ginsenosides inversely impact the antiproliferative potential of these compounds. In addition, ginsenoside stereoselectivity and double bond position also influence the anticancer activity. Future studies should focus on characterizing active red ginseng derivatives as potential anticancer drugs.

  3. Spatial and temporal patterns of bioindicator mercury in pennsylvania oak forest.

    PubMed

    McClenahen, James R; Hutnik, Russell J; Davis, Donald D

    2013-01-01

    We monitored spatial and temporal patterns of total Hg in forest bioindicators to assess possible local, regional, and global changes in atmospheric Hg deposition. Total Hg concentrations were monitored in leaves and fresh litterfall of northern red oak ( L.), on an epiphytic moss ( Hedw.) on northern red oak stems, and in surface soil organic matter (O and O horizons) in Pennsylvania oak-dominated forests. Variously configured plots were used to monitor Hg deposition near local coal-fired generating stations and an industrial city and along an extended regional transect. Linearly decreasing temporal trends in Hg concentrations occurred in leaves, litterfall, moss, and soil O and O. Mean annual Hg concentrations were often greater near local emissions sources compared with remote areas, especially in the initial monitoring period. Decreasing time trends for different impact areas tended to converge due to greater rates of Hg decrease where initial bioindicator Hg levels were higher. Fresh litter and soil O showed the greatest overall potential as Hg bioindicators. We conclude that Hg deposition has been significantly decreasing over time throughout the study area as a result of locally and regionally declining Hg emissions. Reductions in Hg emissions are likely a co-benefit of the 1990 Clean Air Act regulations and changing industrial activities. Recent leveling of several bioindicator Hg time trends may foretell a shift in Hg depositional patterns. Mercury monitoring studies such as this fulfill a need for documenting local and regional effects of emissions reduction.

  4. The development of an aquatic spill model for the White Oak Creek watershed, Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Johnson, R.O.

    1996-05-01

    This study develops an aquatic spill model applicable to the White Oak Creek watershed draining the Oak Ridge National Laboratory. Hazardous, toxic, and radioactive chemicals are handled and stored on the laboratory reservation. An accidental spill into the White Oak Creek watershed could contaminate downstream water supplies if insufficient dilution did not occur. White Oak Creek empties into the Clinch River, which flows into the Tennessee River. Both rivers serve as municipal water supplies. The aquatic spill model provides estimates of the dilution at sequential downstream locations along White Oak creek and the Clinch River after an accidental spill of a liquid containing a radioactively decaying constituent. The location of the spill on the laboratory is arbitrary, while hydrologic conditions range from drought to extreme flood are simulated. The aquatic spill model provides quantitative estimates with which to assess water quality downstream from the site of the accidental spill, allowing an informed decision to be made whether to perform mitigating measures so that the integrity of affected water supplies is not jeopardized.

  5. Where is the extended phenotype in the wild? The community composition of arthropods on mature oak trees does not depend on the oak genotype.

    PubMed

    Gossner, Martin M; Brändle, Martin; Brandl, Roland; Bail, Johannes; Müller, Jörg; Opgenoorth, Lars

    2015-01-01

    Through a series of common garden experiments, it has been shown that heritable phenotypic differences between individual trees can affect arthropod communities. However, field studies under heterogeneous environmental conditions remain rare. In the present study, we investigated the genetic constitution of 121 mature oak host trees at different trophic levels from 10 sites across Bavaria, southern Germany and their associated insect communities. A total of 23,576 individuals representing 395 species of beetles and true bugs were evaluated. In particular, we determined whether the composition of arthropod communities is related to the oak genotype and whether the strength of the relationships decreases from lower to higher trophic levels, such as for phytophagous, xylophagous, zoophagous, and mycetophagous species. The genetic differentiation of oaks was assessed using eight microsatellite markers. We found no significant influence of the oak genotype on neither the full beetle and true bug community nor on any of the analyzed trophic guilds. In contrast, the community composition of the insects was highly related to the space and climate, such that the community similarity decreased with increases in spatial distance and climatic differences. The relationship with space and climate was much stronger in beetles than in true bugs, particularly in mycetophagous species. Our results suggest that spatial processes override the genetic effects of the host plant in structuring arthropod communities on oak trees. Because we used neutral markers, we cannot exclude the possibility that trait-specific markers may reveal a genetic imprint of the foundation tree species on the composition of the arthropod community. However, based on the strength of the spatial patterns in our data set, we assume that genetic differences among oaks are less important in the structuring of arthropod communities. Future whole-genome studies are required to draw a final conclusion.

  6. Where Is the Extended Phenotype in the Wild? The Community Composition of Arthropods on Mature Oak Trees Does Not Depend on the Oak Genotype

    PubMed Central

    Gossner, Martin M.; Brändle, Martin; Brandl, Roland; Bail, Johannes; Müller, Jörg; Opgenoorth, Lars

    2015-01-01

    Through a series of common garden experiments, it has been shown that heritable phenotypic differences between individual trees can affect arthropod communities. However, field studies under heterogeneous environmental conditions remain rare. In the present study, we investigated the genetic constitution of 121 mature oak host trees at different trophic levels from 10 sites across Bavaria, southern Germany and their associated insect communities. A total of 23,576 individuals representing 395 species of beetles and true bugs were evaluated. In particular, we determined whether the composition of arthropod communities is related to the oak genotype and whether the strength of the relationships decreases from lower to higher trophic levels, such as for phytophagous, xylophagous, zoophagous, and mycetophagous species. The genetic differentiation of oaks was assessed using eight microsatellite markers. We found no significant influence of the oak genotype on neither the full beetle and true bug community nor on any of the analyzed trophic guilds. In contrast, the community composition of the insects was highly related to the space and climate, such that the community similarity decreased with increases in spatial distance and climatic differences. The relationship with space and climate was much stronger in beetles than in true bugs, particularly in mycetophagous species. Our results suggest that spatial processes override the genetic effects of the host plant in structuring arthropod communities on oak trees. Because we used neutral markers, we cannot exclude the possibility that trait-specific markers may reveal a genetic imprint of the foundation tree species on the composition of the arthropod community. However, based on the strength of the spatial patterns in our data set, we assume that genetic differences among oaks are less important in the structuring of arthropod communities. Future whole-genome studies are required to draw a final conclusion. PMID:25635387

  7. Working and Learning Among California Oaks

    NASA Astrophysics Data System (ADS)

    Tietje, B.; Gingg, B.; Zingo, J.; Huntsinger, L.

    2009-04-01

    With tremendous support from collaborators and enthusiastic volunteers, "Learning Among the Oaks" at the historic Santa Margarita Ranch has become a favorite outdoor learning experience for hundreds of Santa Margarita School students, along with their teachers and families. Oaks are at the center of this unique and cost effective public education program. From getting to know local oaks to exploring conservation issues within the context of a historic working cattle ranch, students take pride in expanding their awareness and knowledge of the local oak woodland community. Santa Margarita School families representing the varied demographics of the community come together on the trail. For many, the program provides a first opportunity to get to know those who make a living on the land and to understand that this land around their school is more than a pretty view. "Learning Among the Oaks" also addresses the need for quality, hands-on science activities and opportunities to connect children with the outdoor world. Using a thematic approach and correlating lessons with State Science Standards, we've engaged students in a full-spectrum of exciting outdoor learning adventures. As students progress through the grades, they find new challenges within the oak trail environment. We've succeeded in establishing an internship program that brings highly qualified, enthusiastic university students out to practice their science teaching skills while working with elementary school students. In the future, these university student interns may assist with the development of interpretive displays, after-school nature activities and monitoring projects. We've benefited from proximity to Cal Poly State University and its "learn-by-doing" philosophy. We've also succeeded in building a dedicated network of volunteers and collaborators, each with a special interest satisfied through participation in the oak trail program. While "Learning Among the Oaks" has focused on educating school

  8. Large drought-induced variations in oak leaf volatile organic compound emissions during PINOT NOIR 2012

    DOE PAGES

    Geron, Chris; Gu, Lianhong; Daly, Ryan; Harley, Peter; Rasmussen, Rei; Seco, Roger; Guenther, Alex; Karl, Thomas

    2015-12-17

    Here, leaf-level isoprene and monoterpene emissions were collected and analyzed from five of the most abundant oak (Quercus) species in Central Missouri's Ozarks Region in 2012 during PINOT NOIR (Particle Investigations at a Northern Ozarks Tower – NOx, Oxidants, Isoprene Research). June measurements, prior to the onset of severe drought, showed isoprene emission rates and leaf temperature responses similar to those previously reported in the literature and used in Biogenic Volatile Organic Compound (BVOC) emission models. During the peak of the drought in August, isoprene emission rates were substantially reduced, and response to temperature was dramatically altered, especially for themore » species in the red oak subgenus (Erythrobalanus).« less

  9. Seeing Red

    NASA Technical Reports Server (NTRS)

    2008-01-01

    This New Horizons image of Jupiter's volcanic moon Io was taken at 13:05 Universal Time during the spacecraft's Jupiter flyby on February 28, 2007. It shows the reddish color of the deposits from the giant volcanic eruption at the volcano Tvashtar, near the top of the sunlit crescent, as well as the bluish plume itself and the orange glow of the hot lava at its source. The relatively unprocessed image on the left provides the best view of the volcanic glow and the plume deposits, while the version on the right has been brightened to show the much fainter plume, and the Jupiter-lit night side of Io.

    New Horizons' color imaging of Io's sunlit side was generally overexposed because the spacecraft's color camera, the super-sensitive Multispectral Visible Imaging Camera (MVIC), was designed for the much dimmer illumination at Pluto. However, two of MVIC's four color filters, the blue and 'methane' filter (a special filter designed to map methane frost on the surface of Pluto at an infrared wavelength of 0.89 microns), are less sensitive than the others, and thus obtained some well-exposed views of the surface when illumination conditions were favorable. Because only two color filters are used, rather than the usual three, and because one filter uses infrared light, the color is only a rough approximation to what the human eye would see.

    The red color of the Tvashtar plume fallout is typical of Io's largest volcanic plumes, including the previous eruption of Tvashtar seen by the Galileo and Cassini spacecraft in 2000, and the long-lived Pele plume on the opposite side of Io. The color likely results from the creation of reddish three-atom and four-atom sulfur molecules (S3 and S4) from plume gases rich in two-atom sulfur molecules (S2 After a few months or years, the S3 and S4 molecules recombine into the more stable and familiar yellowish form of sulfur consisting of eight-atom molecules (S8), so these red deposits are only seen around recently-active Io

  10. White-tailed deer (Odocoileus virginianus) on the Department of Energy's Oak Ridge Reservation: 1979 status report

    SciTech Connect

    Kitchings, J.T.; Story, J.D.

    1980-10-01

    Seventy-three white-tailed deer (Odocoileus virginianus) were killed by vehicles on the Department of Energy's Oak Ridge Reservation during 1979, an increase of twenty-eight over 1978. Patterns of mortality were similar to those reported in previous documents. During the year, the highest number of deer was killed in October, November, and December. Throughout the year almost twice as many males as females were killed. Reproductive data collected from 19 does revealed that breeding during 1979 probably occurred from early December through early January. Night-lighting showed the same general trends in population increase that were apparent in the road-kill sample. The number of deer night-lighted in 1976 was 11/110 km, while in 1979 the number rose to 40/100 km. the habitat evaluation which began in 1978 was continued in 1979, with a survey of the number of deer trails from a given habitat-type supplementing the radiotelemetry work. Results indicated a preference for cutover areas where immature pine, eastern red cedar, and grasses dominated and for pine plantations where shelter was provided. Upland hardwoods areas were the least preferred.

  11. Impact of Canopy Openness on Spider Communities: Implications for Conservation Management of Formerly Coppiced Oak Forests.

    PubMed

    Košulič, Ondřej; Michalko, Radek; Hula, Vladimír

    2016-01-01

    Traditional woodland management created a mosaic of differently aged patches providing favorable conditions for a variety of arthropods. After abandonment of historical ownership patterns and traditional management and the deliberate transformation to high forest after World War II, large forest areas became darker and more homogeneous. This had significant negative consequences for biodiversity. An important question is whether even small-scale habitat structures maintained by different levels of canopy openness in abandoned coppiced forest may constitute conditions suitable for forest as well as open habitat specialists. We investigated the effect of canopy openness in former traditionally coppiced woodlands on the species richness, functional diversity, activity density, conservation value, and degree of rareness of epigeic spiders. In each of the eight studied locations, 60-m-long transect was established consisting of five pitfall traps placed at regular 15 m intervals along the gradient. Spiders were collected from May to July 2012. We recorded 90 spider species, including high proportions of xeric specialists (40%) and red-listed threatened species (26%). The peaks of conservation indicators, as well as spider community abundance, were shifted toward more open canopies. On the other hand, functional diversity peaked at more closed canopies followed by a rapid decrease with increasing canopy openness. Species richness was highest in the middle of the canopy openness gradient, suggesting an ecotone effect. Ordinations revealed that species of conservation concern tended to be associated with sparse and partly opened canopy. The results show that the various components of biodiversity peaked at different levels of canopy openness. Therefore, the restoration and suitable forest management of such conditions will retain important diversification of habitats in formerly coppiced oak forest stands. We indicate that permanent presence of small-scale improvements

  12. Impact of Canopy Openness on Spider Communities: Implications for Conservation Management of Formerly Coppiced Oak Forests

    PubMed Central

    Košulič, Ondřej; Michalko, Radek; Hula, Vladimír

    2016-01-01

    Traditional woodland management created a mosaic of differently aged patches providing favorable conditions for a variety of arthropods. After abandonment of historical ownership patterns and traditional management and the deliberate transformation to high forest after World War II, large forest areas became darker and more homogeneous. This had significant negative consequences for biodiversity. An important question is whether even small-scale habitat structures maintained by different levels of canopy openness in abandoned coppiced forest may constitute conditions suitable for forest as well as open habitat specialists. We investigated the effect of canopy openness in former traditionally coppiced woodlands on the species richness, functional diversity, activity density, conservation value, and degree of rareness of epigeic spiders. In each of the eight studied locations, 60-m-long transect was established consisting of five pitfall traps placed at regular 15 m intervals along the gradient. Spiders were collected from May to July 2012. We recorded 90 spider species, including high proportions of xeric specialists (40%) and red-listed threatened species (26%). The peaks of conservation indicators, as well as spider community abundance, were shifted toward more open canopies. On the other hand, functional diversity peaked at more closed canopies followed by a rapid decrease with increasing canopy openness. Species richness was highest in the middle of the canopy openness gradient, suggesting an ecotone effect. Ordinations revealed that species of conservation concern tended to be associated with sparse and partly opened canopy. The results show that the various components of biodiversity peaked at different levels of canopy openness. Therefore, the restoration and suitable forest management of such conditions will retain important diversification of habitats in formerly coppiced oak forest stands. We indicate that permanent presence of small-scale improvements

  13. Impact of Canopy Openness on Spider Communities: Implications for Conservation Management of Formerly Coppiced Oak Forests.

    PubMed

    Košulič, Ondřej; Michalko, Radek; Hula, Vladimír

    2016-01-01

    Traditional woodland management created a mosaic of differently aged patches providing favorable conditions for a variety of arthropods. After abandonment of historical ownership patterns and traditional management and the deliberate transformation to high forest after World War II, large forest areas became darker and more homogeneous. This had significant negative consequences for biodiversity. An important question is whether even small-scale habitat structures maintained by different levels of canopy openness in abandoned coppiced forest may constitute conditions suitable for forest as well as open habitat specialists. We investigated the effect of canopy openness in former traditionally coppiced woodlands on the species richness, functional diversity, activity density, conservation value, and degree of rareness of epigeic spiders. In each of the eight studied locations, 60-m-long transect was established consisting of five pitfall traps placed at regular 15 m intervals along the gradient. Spiders were collected from May to July 2012. We recorded 90 spider species, including high proportions of xeric specialists (40%) and red-listed threatened species (26%). The peaks of conservation indicators, as well as spider community abundance, were shifted toward more open canopies. On the other hand, functional diversity peaked at more closed canopies followed by a rapid decrease with increasing canopy openness. Species richness was highest in the middle of the canopy openness gradient, suggesting an ecotone effect. Ordinations revealed that species of conservation concern tended to be associated with sparse and partly opened canopy. The results show that the various components of biodiversity peaked at different levels of canopy openness. Therefore, the restoration and suitable forest management of such conditions will retain important diversification of habitats in formerly coppiced oak forest stands. We indicate that permanent presence of small-scale improvements

  14. Screening of contaminants in Waste Area Grouping 2 at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Blaylock, B.G.; Frank, M.L.; Hoffman, F.O.; Hook, L.A.; Suter, G.W.; Watts, J.A.

    1992-07-01

    Waste Area Grouping 2 (WAG 2) of the Oak Ridge National Laboratory (ORNL) is located in the White Oak Creek Watershed and is composed of White Oak Creek Embayment, White Oak Lake and associated floodplain, and portions of White Oak Creek (WOC) and Melton Branch downstream of ORNL facilities. Contaminants leaving other ORNL WAGs in the WOC watershed pass through WAG 2 before entering the Clinch River. Health and ecological risk screening analyses were conducted on contaminants in WAG 2 to determine which contaminants were of concern and would require immediate consideration for remedial action and which contaminants could be assigned a low priority or further study. For screening purposes, WAG 2 was divided into four geographic reaches: Reach 1, a portion of WOC; Reach 2, Melton Branch; Reach 3, White Oak Lake and the floodplain area to the weirs on WOC and Melton Branch; and Reach 4, the White Oak Creek Embayment, for which an independent screening analysis has been completed. Screening analyses were conducted using data bases compiled from existing data on carcinogenic and noncarcinogenic contaminants, which included organics, inorganics, and radionuclides. Contaminants for which at least one ample had a concentration above the level of detection were placed in a detectable contaminants data base. Those contaminants for which all samples were below the level of detection were placed in a nondetectable contaminants data base.

  15. Seeing Red

    ERIC Educational Resources Information Center

    Galuszka, Peter

    2010-01-01

    This article reports on a study by the National Association of College and University Business Officers and Commonfund Institute that reveals increasing debt further threatens the financial security of U.S. colleges and universities in the aftermath of the recession. Debt increases rapidly as endowments drop and deficit-racked state governments…

  16. Development of oak plantations established for wildlife

    USGS Publications Warehouse

    Twedt, D.J.; Wilson, R.R.

    2002-01-01

    Extensive areas that are currently in agricultural production within the Mississippi Alluvial Valley are being restored to bottomland hardwood forests. Oaks (Quercus sp.), sown as seeds (acorns) or planted as seedlings, are the predominant trees established on most afforested sites. To compare stand development and natural invasion on sites afforested by planting seedlings or by sowing acorns, we sampled woody vegetation on ten 14- to 18-year-old oak plantations established to provide wildlife habitat. Stem densities of about 900 oaks/ha were comparable between stands established by sowing 4000 acorns/ha and stands established by planting 900 seedlings/ha. Densities of oaks in stands established from seedlings increased 38% from densities detected when these stands were 4- to 8-year-old. Densities of oaks established from field-sown acorns increased >100% during this same 10-year span. Oaks that were planted as seedlings were larger than those established from acorns, but trees resulting from either afforestation method were larger than trees naturally colonizing these sites. Natural invasion of woody species varied greatly among afforested sites, but was greater and more diverse on sites sown with acorns. Afforested stands were dominated by planted species, whereas naturally invading species were rare among dominant canopy trees. When afforestation objectives are primarily to provide wildlife habitat, we recommend, sowing acorns rather than planting seedlings. Additionally, planting fewer seeds or seedlings, diversifying the species planted, and leaving non-planted gaps will increase diversity of woody species and promote a more complex forest structure that enhances the suitability of afforested sites for wildlife.

  17. Effects of Cattle Management on Oak Regeneration in Northern Californian Mediterranean Oak Woodlands

    PubMed Central

    López-Sánchez, Aida; Schroeder, John; Roig, Sonia; Sobral, Mar; Dirzo, Rodolfo

    2014-01-01

    Oak woodlands of Mediterranean ecosystems, a major component of biodiversity hotspots in Europe and North America, have undergone significant land-use change in recent centuries, including an increase in grazing intensity due to the widespread presence of cattle. Simultaneously, a decrease in oak regeneration has been observed, suggesting a link between cattle grazing intensity and limited oak regeneration. In this study we examined the effect of cattle grazing on coast live oak (Quercus agrifolia Née) regeneration in San Francisco Bay Area, California. We studied seedling, sapling and adult density of coast live oak as well as vertebrate herbivory at 8 independent sites under two grazing conditions: with cattle and wildlife presence (n = 4) and only with wildlife (n = 4). The specific questions we addressed are: i) to what extent cattle management practices affect oak density, and ii) what is the effect of rangeland management on herbivory and size of young oak plants. In areas with cattle present, we found a 50% reduction in young oak density, and plant size was smaller, suggesting that survival and growth young plants in those areas are significantly limited. In addition, the presence of cattle raised the probability and intensity of herbivory (a 1.5 and 1.8-fold difference, respectively). These results strongly suggest that the presence of cattle significantly reduced the success of young Q. agrifolia through elevated herbivory. Given the potential impact of reduced recruitment on adult populations, modifying rangeland management practices to reduce cattle grazing pressure seems to be an important intervention to maintain Mediterranean oak woodlands. PMID:25126939

  18. View of New Big Oak Flat Road seen from Old ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    View of New Big Oak Flat Road seen from Old Wawona Road near location of photograph HAER CA-148-17. Note road cuts, alignment, and tunnels. Devils Dance Floor at left distance. Looking northwest - Big Oak Flat Road, Between Big Oak Flat Entrance & Merced River, Yosemite Village, Mariposa County, CA

  19. White Oak Creek Embayment site characterization and contaminant screening analysis

    SciTech Connect

    Blaylock, B.G.; Ford, C.J.; Frank, M.L.; Hoffman, F.O.; Hook, L.A.

    1993-01-01

    Analyses of sediment samples collected near the mouth of White Oak Creek during the summer of 1990 revealed [sup 137]Cs concentrations [> 10[sup 6] Bq/kg dry wt (> 10[sup 4] pCi/g dry wt)] near the sediment surface. Available evidence indicates that these relatively high concentrations of [sup 137]Cs now at the sediment surface were released from White Oak Dam in the mid-1950s and had accumulated at depositionalsites in the embayment. These accumulated sediments are being eroded and transported downstream primarily during winter low-water levels by flood events and by a combination of normal downstream flow and the water turbulence created by the release of water from Melton Hill Dam during hydropower generation cycles. This report provides a more thorough characterization of the extent of contamination in WOCE than was previously available. Environmental samples collected from WOCE were analyzed for organic, inorganic, and radiological contaminants in fish, water, and sediment. These results were used to conduct a human health effects screening analysis. Walkover radiation surveys conducted inside the fenced area surrounding the WOCE at summer-pool (741 ft MSL) and at winter-pool (733 ft MSL) level, indicated a maximum exposure rate of 3 mR h[sup 1] 1 m above the soil surface.

  20. Oak Ridge reservation land-use plan

    SciTech Connect

    Bibb, W. R.; Hardin, T. H.; Hawkins, C. C.; Johnson, W. A.; Peitzsch, F. C.; Scott, T. H.; Theisen, M. R.; Tuck, S. C.

    1980-03-01

    This study establishes a basis for long-range land-use planning to accommodate both present and projected DOE program requirements in Oak Ridge. In addition to technological requirements, this land-use plan incorporates in-depth ecological concepts that recognize multiple uses of land as a viable option. Neither environmental research nor technological operations need to be mutually exclusive in all instances. Unique biological areas, as well as rare and endangered species, need to be protected, and human and environmental health and safety must be maintained. The plan is based on the concept that the primary use of DOE land resources must be to implement the overall DOE mission in Oak Ridge. This document, along with the base map and overlay maps, provides a reasonably detailed description of the DOE Oak Ridge land resources and of the current and potential uses of the land. A description of the land characteristics, including geomorphology, agricultural productivity and soils, water courses, vegetation, and terrestrial and aquatic animal habitats, is presented to serve as a resource document. Essentially all DOE land in the Oak Ridge area is being fully used for ongoing DOE programs or has been set aside as protected areas.

  1. Oak Ridge Reservation Waste Management Plan

    SciTech Connect

    Turner, J.W.

    1995-02-01

    This report presents the waste management plan for the Oak Ridge Reservation facilities. The primary purpose is to convey what facilities are being used to manage wastes, what forces are acting to change current waste management systems, and what plans are in store for the coming fiscal year.

  2. Oak Park Middle School and General Electric.

    ERIC Educational Resources Information Center

    Buckley, Anita

    1987-01-01

    Describes a partnership between Oak Park Middle School in Decatur, Alabama, and the General Electric Company that features the use of the quality circle approach. Not only were teachers, administrators, and parents organized into school quality circles, but students also formed quality circles to solve problems at the school. (CH)

  3. Oak ecosystem succession of the Northern Caucasus

    NASA Astrophysics Data System (ADS)

    Chalaya, Elena; Slepykh, Victor; Efimenko, Natalia; Povolotskaya, Nina

    2014-05-01

    English oak (Quercus robur L.) along with its well-known good properties has a high sanitary-hygienic and curative potential. Its volatile metabolites (VM) influence bacteriostatically Staphylococcus aureus 209r, oppressing it in vitro by 85% compared with the control, and Escherichia coli by 45%. There is the least amount of epiphytic microorganisms on the leaves of Q. robur L. compared with some tree species [1]. In addition, VM of Q. robur L. have direct milieu (hypotensive) effects on the organism under its canopy, lowering blood pressure by 20-25 mm Hg [2]. A.P. Kazankin (1993) [4] calculated the prehistoric formula of forest species composition of Caucasian Mineral Waters region (Northern Caucasus): 6Qr3Crp1Fr which was based on the theory of calcium-magnesium absorption complex. According to the theory, underground mineral water, soil, forest litter and the leaves of ground vegetation of the area have the same ratio of the cations Ca and Mg - calcium-magnesium index [3]. Hence oldgrowth in the region consisted of oak (Qr) by 60%, hornbeam (Carpinus-Crp) by 30% and ash (Fraxinus-Fr) only by 10%. Currently, the formula of the forests of the region has been changed by man: 5Fr3Crp2Qr. The proportion of oak forests has decreased to 20%, the proportion of ash has increased by 50%, but the proportion of hornbeam hasn't changed. So it is relevant to restore oak forests of the region in the former ratio to other forest-forming species - ash and hornbeam. Taking into consideration the change of economic formation of society in Russia, it is extremely important to restore natural seed oak forests. Therein the luminance of surface areal is a limiting factor. We have calculated that the natural recovery of oak forests is possible providing observation of optimal moisture standards and soil fertility in combination with solar light within 10-24% from the light of open space. Measures for promotion of oak natural regeneration in mountain resorts of the Northern Caucasus

  4. Fluorescent indices of oak and wheat leaves in dependence on chlorophyll content

    NASA Astrophysics Data System (ADS)

    Kalmatskaya, Olesya Ð. ń.; Karavaev, Vladimir A.; Gunar, Lyudmila E.

    2016-04-01

    Fluorescence spectra and fluorescence induction curves of the leaves of two plant species in dependence on chlorophyll content were studied. Red oak (Quercus rubra L.) leaves upon the autumn chlorophyll degradation, as well as wheat leaves (Triticum aestivum L.) at various stages of ontogenesis showed linear dependence between the ratio ω = F740 / F685 (the ratio of the maximum values of fluorescence at respective wavelengths) and chlorophyll content. In both cases, parameter Fv / Fm (the relative value of the variable fluorescence) remained almost unchanged up to significant reduction of chlorophyll content, indicating on maintaining the high photochemical activity of photosystem 2.

  5. 78 FR 2431 - Notice of Inventory Completion: U.S. Department of Energy Oak Ridge Office, Oak Ridge, TN...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-11

    .... Department of Energy Oak Ridge Office has corrected an inventory of human remains and associated funerary... of Energy Oak Ridge Office. Repatriation of the human remains and associated funerary object to the... object in the possession of the U.S. Department of Energy Oak Ridge Office. The human remains...

  6. 76 FR 80433 - In the Matter of Royal Oak Capital Management, LLC, 6173 Bellevue Road, Royal Oak, MD 21662...

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-23

    ... From the Federal Register Online via the Government Publishing Office SECURITIES AND EXCHANGE COMMISSION In the Matter of Royal Oak Capital Management, LLC, 6173 Bellevue Road, Royal Oak, MD 21662...''), cancelling the registration of Royal Oak Capital Management, LLC, hereinafter referred to as the...

  7. A unique ecological niche fosters hybridization of oak-tree and vineyard isolates of Saccharomyces cerevisiae.

    PubMed

    Clowers, Katie J; Will, Jessica L; Gasch, Audrey P

    2015-12-01

    Differential adaptation to distinct niches can restrict gene flow and promote population differentiation within a species. However, in some cases the distinction between niches can collapse, forming a hybrid niche with features of both environments. We previously reported that distinctions between vineyards and oak soil present an ecological barrier that restricts gene flow between lineages of Saccharomyces cerevisiae. Vineyard isolates are tolerant to stresses associated with grapes while North American oak strains are particularly tolerant to freeze-thaw cycles. Here, we report the isolation of S. cerevisiae strains from Wisconsin cherry trees, which display features common to vineyards (e.g. high sugar concentrations) and frequent freeze-thaw cycles. Genome sequencing revealed that the isolated strains are highly heterozygous and represent recent hybrids of the oak × vineyard lineages. We found that the hybrid strains are phenotypically similar to vineyard strains for some traits, but are more similar to oak strains for other traits. The cherry strains were exceptionally good at growing in cherry juice, raising the possibility that they have adapted to this niche. We performed transcriptome profiling in cherry, oak and vineyard strains and show that the cherry-tree hybrids display vineyard-like or oak-like expression, depending on the gene sets, and in some cases, the expression patterns linked back to shared stress tolerances. Allele-specific expression in these natural hybrids suggested concerted cis-regulatory evolution at sets of functionally regulated genes. Our results raise the possibility that hybridization of the two lineages provides a genetic solution to the thriving in this unique niche. PMID:26518477

  8. Extreme host plant conservatism during at least 20 million years of host plant pursuit by oak gallwasps.

    PubMed

    Stone, Graham N; Hernandez-Lopez, Antonio; Nicholls, James A; di Pierro, Erica; Pujade-Villar, Juli; Melika, George; Cook, James M

    2009-04-01

    Diversification of insect herbivores is often associated with coevolution between plant toxins and insect countermeasures, resulting in a specificity that restricts host plant shifts. Gall inducers, however, bypass plant toxins and the factors influencing host plant associations in these specialized herbivores remain unclear. We reconstructed the evolution of host plant associations in Western Palaearctic oak gallwasps (Cynipidae: Cynipini), a species-rich lineage of specialist herbivores on oak (Quercus). (1) Bayesian analyses of sequence data for three genes revealed extreme host plant conservatism, with inferred shifts between major oak lineages (sections Cerris and Quercus) closely matching the minimum required to explain observed diversity. It thus appears that the coevolutionary demands of gall induction constrain host plant shifts, both in cases of mutualism (e.g., fig wasps, yucca moths) and parasitism (oak gallwasps). (2) Shifts between oak sections occurred independently in sexual and asexual generations of the gallwasp lifecycle, implying that these can evolve independently. (3) Western Palaearctic gallwasps associated with sections Cerris and Quercus diverged at least 20 million years ago (mya), prior to the arrival of oaks in the Western Palaearctic from Asia 5-7 mya. This implies an Asian origin for Western Palaearctic gallwasps, with independent westwards range expansion by multiple lineages.

  9. Osmotic potential of several hardwood species as affected by manipulation of throughfall precipitation in an upland oak forest during a dry year.

    PubMed

    Tschaplinski, Timothy J.; Gebre, G. Michael; Shirshac, Terri L.

    1998-05-01

    Components of dehydration tolerance, including osmotic potential at full turgor (Psi(pio)) and osmotic adjustment (lowering of Psi(pio)), of several deciduous species were investigated in a mature, upland oak forest in eastern Tennessee. Beginning July 1993, the trees were subjected to one of three throughfall precipitation treatments: ambient, ambient minus 33% (dry treatment), and ambient plus 33% (wet treatment). During the dry 1995 growing season, leaf water potentials of all species declined to between -2.5 and -3.1 MPa in the dry treatment. There was considerable variation in Psi(pio) among species (-1.0 to -2.0 MPa). Based on Psi(pio) values, American beech (Fagus grandifolia Ehrh.), dogwood (Cornus florida L.), and sugar maple (Acer saccharum Marsh.) were least dehydration tolerant, red maple (A. rubrum L.) was intermediate in tolerance, and white oak (Quercus alba L.) and chestnut oak (Quercus prinus L.) were most tolerant. During severe drought, overstory chestnut oak and understory dogwood, red maple and chestnut oak displayed osmotic adjustment (-0.12 to -0.20 MPa) in the dry treatment relative to the wet treatment. (No osmotic adjustment was evident in understory red maple and chestnut oak during the previous wet year.) Osmotic potential at full turgor was generally correlated with leaf water potential, with both declining over the growing season, especially in species that displayed osmotic adjustment. However, osmotic adjustment was not restricted to species considered dehydration tolerant; for example, dogwood typically maintained high Psi(pio) and displayed osmotic adjustment to drought, but had the highest mortality rates of the species studied. Understory saplings tended to have higher Psi(pio) than overstory trees when water availability was high, but Psi(pio) of understory trees declined to values observed for overstory trees during severe drought. We conclude that Psi(pio) varies among deciduous hardwood species and is dependent on canopy

  10. White Oak Creek watershed: Melton Valley area Remedial Investigation report, at the Oak Ridge National Laboratory, Oak Ridge, Tennessee: Volume 2, Appendixes A and B

    SciTech Connect

    1996-11-01

    This document contains Appendixes A ``Source Inventory Information for the Subbasins Evaluated for the White Oak Creek Watershed`` and B ``Human Health Risk Assessment for White Oak Creek / Melton Valley Area`` for the remedial investigation report for the White Oak Creek Watershed and Melton Valley Area. Appendix A identifies the waste types and contaminants for each subbasin in addition to the disposal methods. Appendix B identifies potential human health risks and hazards that may result from contaminants present in the different media within Oak Ridge National Laboratory sites.

  11. Perfume allergy due to oak moss and other lichens.

    PubMed

    Thune, P; Solberg, Y; McFadden, N; Staerfelt, F; Sandberg, M

    1982-11-01

    During a period of 2 1/2 years, 7 of 2000 patients routinely tested at our laboratory revealed contact allergy to oak moss in perfumes. All reacted to a mixture of different lichens and to some specific lichen compounds. The sensitivity was probably induced by cosmetics containing lichen substances. The following 3 compounds caused reactions in all patients tested: atranorin, evernic and usnic acids. 3 patients were photosensitive, but stronger reactions were elicited by prolonged contact during occlusion of the patches and complete protection against light, rather than by irradiation alone. The data suggest that the sensitizing capacity of the lichen compounds is primarily of a contact rather than of a photocontact nature.

  12. Perfume allergy due to oak moss and other lichens.

    PubMed

    Thune, P; Solberg, Y; McFadden, N; Staerfelt, F; Sandberg, M

    1982-11-01

    During a period of 2 1/2 years, 7 of 2000 patients routinely tested at our laboratory revealed contact allergy to oak moss in perfumes. All reacted to a mixture of different lichens and to some specific lichen compounds. The sensitivity was probably induced by cosmetics containing lichen substances. The following 3 compounds caused reactions in all patients tested: atranorin, evernic and usnic acids. 3 patients were photosensitive, but stronger reactions were elicited by prolonged contact during occlusion of the patches and complete protection against light, rather than by irradiation alone. The data suggest that the sensitizing capacity of the lichen compounds is primarily of a contact rather than of a photocontact nature. PMID:7172655

  13. Hydrologic data summary for the White Oak Watershed at Oak Ridge National Laboratory, Oak Ridge, Tennessee, October 1990--December 1991

    SciTech Connect

    Borders, D.M.; Gregory, S.M.; Clapp, R.B.; Frederick, B.J.; Watts, J.A.

    1992-06-01

    This report summarizes for the 15-month period of October 1990-- December 1991 the available dynamic hydrologic data collected, primarily on the White Oak Creek (WOC) watershed, along with information collected on the surface flow systems that affect the quality or quantity of surface water. The collection of hydrologic data is one component of numerous, ongoing Oak Ridge National Laboratory (ORNL) environmental studies and monitoring programs and is intended to: (1) characterize the quantity and quality of water in the flow systems; (2) assist with the planning and assessment of remedial action activities; and, (3) provide long-term availability of data and quality assurance. Characterization of the hydrology of the WOC watershed is critical for understanding the processes that drive contaminant transport in the watershed. Identification of spatial and temporal trends in hydrologic parameters and mechanisms that affect the movement of contaminants supports the development of interim corrective measures and remedial restoration alternatives. In addition, hydrologic monitoring supports long-term assessment of the effectiveness of remedial actions in limiting the transport of contaminants across Waste Area Grouping (WAG) boundaries and ultimately to the off-site environment. For these reasons, it is of paramount importance to the Environmental Restoration Program (ERP) to collect and report hydrologic data activities that contribute to the Site Investigations component of the ERP. (White Oak Creek is also referred to as ``Whiteoak`` Creek).

  14. Hydrologic data summary for the White Oak Watershed at Oak Ridge National Laboratory, Oak Ridge, Tennessee, October 1990--December 1991

    SciTech Connect

    Borders, D.M.; Gregory, S.M.; Clapp, R.B.; Frederick, B.J.; Watts, J.A.

    1992-06-01

    This report summarizes for the 15-month period of October 1990-- December 1991 the available dynamic hydrologic data collected, primarily on the White Oak Creek (WOC) watershed, along with information collected on the surface flow systems that affect the quality or quantity of surface water. The collection of hydrologic data is one component of numerous, ongoing Oak Ridge National Laboratory (ORNL) environmental studies and monitoring programs and is intended to: (1) characterize the quantity and quality of water in the flow systems; (2) assist with the planning and assessment of remedial action activities; and, (3) provide long-term availability of data and quality assurance. Characterization of the hydrology of the WOC watershed is critical for understanding the processes that drive contaminant transport in the watershed. Identification of spatial and temporal trends in hydrologic parameters and mechanisms that affect the movement of contaminants supports the development of interim corrective measures and remedial restoration alternatives. In addition, hydrologic monitoring supports long-term assessment of the effectiveness of remedial actions in limiting the transport of contaminants across Waste Area Grouping (WAG) boundaries and ultimately to the off-site environment. For these reasons, it is of paramount importance to the Environmental Restoration Program (ERP) to collect and report hydrologic data activities that contribute to the Site Investigations component of the ERP. (White Oak Creek is also referred to as Whiteoak'' Creek).

  15. A Review of Polyphenolics in Oak Woods

    PubMed Central

    Zhang, Bo; Cai, Jian; Duan, Chang-Qing; Reeves, Malcolm J.; He, Fei

    2015-01-01

    Polyphenolics, which are ubiquitous in plants, currently are among the most studied phytochemicals because of their perceptible chemical properties and antioxidant activity. Oak barrels and their alternatives, which are widely used in winemaking nowadays, contribute polyphenolics to wines and are thought to play crucial roles in the development of wines during aging. This study summarizes the detailed information of polyphenolics in oak woods and their products by examining their structures and discussing their chemical reactions during wine aging. This paper evaluates the most recent developments in polyphenolic chemistry by summarizing their extraction, separation, and their identification by the use of chromatographic and spectral techniques. In addition, this paper also introduces polyphenol bioactive ingredients in other plant foods. PMID:25826529

  16. VOC emissions from beech, birch, and oak

    NASA Astrophysics Data System (ADS)

    Wildt, J.; Folkers, A.; Koch, N.; Kleist, E.

    2003-04-01

    VOC emissions from beech (Fagus sylvatica), birch (Betula pendula), and oak (Quercus robur) were studied in continuously stirred tank reactors. Oak emitted nearly exclusively isoprene. The dependence of these isoprene emissions on temperature and photosynthetic radiation (PAR) could quite well be described with existing algorithms and the emission factors were fairly constant. Beech and birch emitted mainly short chained oxygenated VOC and monoterpenes. Temperature and PAR dependence of monoterpene emissions were superimposed by a slow frequency modulation. Hence, descriptions of these emissions with existing algorithms were not successful. Moreover, in some cases the emission pattern switched drastically. For birch it was observed that the plant switched from a sesquiterpene emitter to a monoterpene emitter. emission pattern plants. Emissions of ethanol, acetaldehyde, and methanol were not affected by PAR. Here, the emission factors are determined by other factors not included in existing algorithms.

  17. Oak Ridge National Laboratory Waste Management Plan

    SciTech Connect

    Not Available

    1992-12-01

    The objective of the Oak Ridge National Laboratory Waste Management Plan is to compile and to consolidate information annually on how the ORNL Waste Management Program is conducted, which waste management facilities are being used to manage wastes, what forces are acting to change current waste management systems, what activities are planned for the forthcoming fiscal year (FY), and how all of the activities are documented.

  18. ORNL (Oak Ridge National Laboratory) 89

    SciTech Connect

    Anderson, T.D.; Appleton, B.R.; Jefferson, J.W.; Merriman, J.R.; Mynatt, F.R.; Richmond, C.R.; Rosenthal, M.W.

    1989-01-01

    This is the inaugural issues of an annual publication about the Oak Ridge National Laboratory. Here you will find a brief overview of ORNL, a sampling of our recent research achievements, and a glimpse of the directions we want to take over the next 15 years. A major purpose of ornl 89 is to provide the staff with a sketch of the character and dynamics of the Laboratory.

  19. Large drought-induced variations in oak leaf volatile organic compound emissions during PINOT NOIR 2012.

    PubMed

    Geron, Chris; Daly, Ryan; Harley, Peter; Rasmussen, Rei; Seco, Roger; Guenther, Alex; Karl, Thomas; Gu, Lianhong

    2016-03-01

    Leaf-level isoprene and monoterpene emissions were collected and analyzed from five of the most abundant oak (Quercus) species in Central Missouri's Ozarks Region in 2012 during PINOT NOIR (Particle Investigations at a Northern Ozarks Tower - NOx, Oxidants, Isoprene Research). June measurements, prior to the onset of severe drought, showed isoprene emission rates and leaf temperature responses similar to those previously reported in the literature and used in Biogenic Volatile Organic Compound (BVOC) emission models. During the peak of the drought in August, isoprene emission rates were substantially reduced, and response to temperature was dramatically altered, especially for the species in the red oak subgenus (Erythrobalanus). Quercus stellata (in the white oak subgenus Leucobalanus), on the other hand, increased its isoprene emission rate during August, and showed no decline at high temperatures during June or August, consistent with its high tolerance to drought and adaptation to xeric sites at the prairie-deciduous forest interface. Mid-late October measurements were conducted after soil moisture recharge, but were affected by senescence and cooler temperatures. Isoprene emission rates were considerably lower from all species compared to June and August data. The large differences between the oaks in response to drought emphasizes the need to consider BVOC emissions at the species level instead of just the whole canopy. Monoterpene emissions from Quercus rubra in limited data were highest among the oaks studied, while monoterpene emissions from the other oak species were 80-95% lower and less than assumed in current BVOC emission models. Major monoterpenes from Q. rubra (and in ambient air) were p-cymene, α-pinene, β-pinene, d-limonene, γ-terpinene, β-ocimene (predominantly1,3,7-trans-β-ocimene, but also 1,3,6-trans-β-ocimene), tricyclene, α-terpinene, sabinene, terpinolene, and myrcene. Results are discussed in the context of canopy flux studies

  20. Large drought-induced variations in oak leaf volatile organic compound emissions during PINOT NOIR 2012.

    PubMed

    Geron, Chris; Daly, Ryan; Harley, Peter; Rasmussen, Rei; Seco, Roger; Guenther, Alex; Karl, Thomas; Gu, Lianhong

    2016-03-01

    Leaf-level isoprene and monoterpene emissions were collected and analyzed from five of the most abundant oak (Quercus) species in Central Missouri's Ozarks Region in 2012 during PINOT NOIR (Particle Investigations at a Northern Ozarks Tower - NOx, Oxidants, Isoprene Research). June measurements, prior to the onset of severe drought, showed isoprene emission rates and leaf temperature responses similar to those previously reported in the literature and used in Biogenic Volatile Organic Compound (BVOC) emission models. During the peak of the drought in August, isoprene emission rates were substantially reduced, and response to temperature was dramatically altered, especially for the species in the red oak subgenus (Erythrobalanus). Quercus stellata (in the white oak subgenus Leucobalanus), on the other hand, increased its isoprene emission rate during August, and showed no decline at high temperatures during June or August, consistent with its high tolerance to drought and adaptation to xeric sites at the prairie-deciduous forest interface. Mid-late October measurements were conducted after soil moisture recharge, but were affected by senescence and cooler temperatures. Isoprene emission rates were considerably lower from all species compared to June and August data. The large differences between the oaks in response to drought emphasizes the need to consider BVOC emissions at the species level instead of just the whole canopy. Monoterpene emissions from Quercus rubra in limited data were highest among the oaks studied, while monoterpene emissions from the other oak species were 80-95% lower and less than assumed in current BVOC emission models. Major monoterpenes from Q. rubra (and in ambient air) were p-cymene, α-pinene, β-pinene, d-limonene, γ-terpinene, β-ocimene (predominantly1,3,7-trans-β-ocimene, but also 1,3,6-trans-β-ocimene), tricyclene, α-terpinene, sabinene, terpinolene, and myrcene. Results are discussed in the context of canopy flux studies

  1. Comparison of the carbon stock in forest soil of sessile oak and beech forests

    NASA Astrophysics Data System (ADS)

    Horváth, Adrienn; Bene, Zsolt; Bidló, András

    2016-04-01

    Forest ecosystems are the most important carbon sinks. The forest soils play an important role in the global carbon cycle, because the global climate change or the increase of atmospheric CO2 level. We do not have enough data about the carbon stock of soils and its change due to human activities, which have similar value to carbon content of biomass. In our investigation we measured the carbon stock of soil in 10 stands of Quercus petraea and Fagus sylvatica. We took a 1.1 m soil column with soil borer and divided to 11 samples each column. The course organic and root residues were moved. After evaluation, we compared our results with other studies and the carbon stock of forests to each other. Naturally, the amount of SOC was the highest in the topsoil layers. However, we found significant difference between forest stands which stayed on the same homogenous bedrock, but very close to each other (e.g. distance was 1 or 2 km). We detected that different forest utilizations and tree species have an effect on the forest carbon as the litter as well (amount, composition). In summary, we found larger amount (99.1 C t/ha on average) of SOC in soil of stands, where sessile oak were the main stand-forming tree species. The amount of carbon was the least in turkey oak-sessile oak stands (85.4 C t/ha on average). We found the highest SOC (118.3 C t/ha) in the most mixed stand (silver lime-beech-red oak). In the future, it will be very important: How does climate change affect the spread of tree species or on carbon storage? Beech is more sensitive, but even sessile oak. These species are expected to replace with turkey oak, which is less sensitive to drought. Thus, it is possible in the future that we can expect to decrease of forest soil carbon stock capacity, which was confirmed by our experiment. Keywords: carbon sequestration, mitigation, Fagus sylvatica, Quercus petraea, litter Acknowledgements: Research is supported by the "Agroclimate.2" (VKSZ_12-1-2013-0034) EU

  2. RED-LETTER DAYS

    EPA Science Inventory

    The word "red-letter" is an adjective meaning "of special significance." It's origin is from the practice of marking Christian holy days in red letters on calendars. The "red-letter days" to which I refer occurred while I was a graduate student of ...

  3. Red blood cell production

    MedlinePlus

    ... cells are an important element of blood. Their job is to transport oxygen to the body’s tissues in exchange for carbon dioxide, which is carried to and eliminated by the lungs. Red blood cells are formed in the red bone marrow of bones. Stem cells in the red bone marrow called hemocytoblasts ...

  4. Floodplain and wetlands assessment of the White Oak Creek Embayment

    SciTech Connect

    Not Available

    1991-07-01

    This report describes the proposed methods for dealing with contaminants that have accumulated in White Oak Creek, White Oak Lake, and the White Oak Creek Embayment as a result of process releases and discharges from the Oak Ridge National Laboratory. Alternative methods of cleaning up the area which were considered in accordance with regulatory guidelines are listed, and information supporting the selected methods is provided. Also included are results of a site survey conducted at the White Oak Creek Embayment and the expected effects of the proposed control structures on the floodplain and wetlands. The appendix contains figures showing the nine cross-sections of the stream channel surveyed during studies of the White Oak Creek area.

  5. Oak moss extracts in the diagnosis of fragrance contact allergy.

    PubMed

    Johansen, Jeanne Duus; Heydorn, Siri; Menné, Torkil

    2002-03-01

    Oak moss absolute is one of the eight ingredients of the fragrance mix (FM) used for diagnosing perfume allergy. Oak moss absolute is an extract prepared from the lichen Evernia prunastri growing on oak trees. It has been shown that the oak moss patch test material from one producer contained resin acids which are ingredients of another lichen, tree moss. Resin acids, e.g. abietic acid and dehydroabietic acid, are also the main allergens in colophonium. The aim of the study was to assess whether the contamination of oak moss absolute and thus the FM with resin acids had affected their diagnostic value so that they, instead of indicating fragrance allergy, had become indicators of allergy to resin acids and thus colophonium. Two studies were undertaken. First the relationship between patch test reactions to FM, oak moss absolute, both with contents of resin acids, and colophonium were assessed in 885 consecutive patients. A significant relationship between reactions to colophonium and FM was seen (p < 0.001) as well as a significant relationship between oak moss absolute and colophonium (p < 0.001). The relationship between colophonium and FM was still significant when all reactions to oak moss absolute were disregarded (p < 0.001), showing a relationship also between colophonium and fragrance ingredients other than oak moss absolute. Second, 119 consecutive patients were tested with an old and a new version of oak moss absolute containing resin acid (0.05%) and no measurable resin acid, respectively, and with the corresponding FM. No overall difference in reactivity to the old and new version of oak moss absolute/FM was seen. It is concluded the diagnostic value of oak moss absolute as indicator fragrance contact allergy has been and is unaffected by the resin acid contamination.

  6. Influence of host species on ectomycorrhizal communities associated with two co-occurring oaks (Quercus spp.) in a tropical cloud forest.

    PubMed

    Morris, Melissa H; Pérez-Pérez, Miguel A; Smith, Matthew E; Bledsoe, Caroline S

    2009-08-01

    Interactions between host tree species and ectomycorrhizal fungi are important in structuring ectomycorrhizal communities, but there are only a few studies on host influence of congeneric trees. We investigated ectomycorrhizal community assemblages on roots of deciduous Quercus crassifolia and evergreen Quercus laurina in a tropical montane cloud forest, one of the most endangered tropical forest ecosystems. Ectomycorrhizal fungi were identified by sequencing internal transcribed spacer and partial 28S rRNA gene. We sampled 80 soil cores and documented high ectomycorrhizal diversity with a total of 154 taxa. Canonical correspondence analysis indicated that oak host was significant in explaining some of the variation in ectomycorrhizal communities, despite the fact that the two Quercus species belong to the same red oak lineage (section Lobatae). A Tuber species, found in 23% of the soil cores, was the most frequent taxon. Similar to oak-dominated ectomycorrhizal communities in temperate forests, Thelephoraceae, Russulaceae and Sebacinales were diverse and dominant.

  7. Simulated changes in biogenic VOC emissions and ozone formation from habitat expansion of Acer Rubrum (red maple)

    NASA Astrophysics Data System (ADS)

    Drewniak, Beth A.; Snyder, Peter K.; Steiner, Allison L.; Twine, Tracy E.; Wuebbles, Donald J.

    2014-01-01

    A new vegetation trend is emerging in northeastern forests of the United States, characterized by an expansion of red maple at the expense of oak. This has changed emissions of biogenic volatile organic compounds (BVOCs), primarily isoprene and monoterpenes. Oaks strongly emit isoprene while red maple emits a negligible amount. This species shift may impact nearby urban centers because the interaction of isoprene with anthropogenic nitrogen oxides can lead to tropospheric ozone formation and monoterpenes can lead to the formation of particulate matter. In this study the Global Biosphere Emissions and Interactions System was used to estimate the spatial changes in BVOC emission fluxes resulting from a shift in forest composition between oak and maple. A 70% reduction in isoprene emissions occurred when oak was replaced with maple. Ozone simulations with a chemical box model at two rural and two urban sites showed modest reductions in ozone concentrations of up to 5-6 ppb resulting from a transition from oak to red maple, thus suggesting that the observed change in forest composition may benefit urban air quality. This study illustrates the importance of monitoring and representing changes in forest composition and the impacts to human health indirectly through changes in BVOCs.

  8. Fade to Red

    NASA Technical Reports Server (NTRS)

    2006-01-01

    [figure removed for brevity, see original site] Infrared Andromeda Galaxy (M31) Poster [figure removed for brevity, see original site] [figure removed for brevity, see original site] Stars Dust

    This animation shows the Andromeda galaxy, first as seen in visible light by the National Optical Astronomy Observatory, then as seen in infrared by NASA's Spitzer Space Telescope.

    The visible-light image highlights the galaxy's population of about one trillion stars. The stars are so crammed into its core that this region blazes with bright starlight.

    In contrast, the false-colored Spitzer view reveals red waves of dust against a more tranquil sea of blue stars. The dust lanes can be seen twirling all the way into the galaxy's center. This dust is warmed by young stars and shines at infrared wavelengths , which are represented in red. The blue color signifies shorter-wavelength infrared light primarily from older stars.

    The Andromeda galaxy, also known affectionately by astronomers as Messier 31, is located 2.5 million light-years away in the constellation Andromeda. It is the closest major galaxy to the Milky Way, making it the ideal specimen for carefully examining the nature of galaxies. On a clear, dark night, the galaxy can be spotted with the naked eye as a fuzzy blob.

    Andromeda's entire disk spans about 260,000 light-years, which means that a light beam would take 260,000 years to travel from one end of the galaxy to the other. By comparison, the Milky Way is about 100,000 light-years across. When viewed from Earth, Andromeda occupies a portion of the sky equivalent to seven full moons.

    Because this galaxy is so large, the infrared images had to be stitched together out of about 3,000 separate Spitzer exposures. The light detected by Spitzer's infrared array camera at 3.6 and 4.5 microns is sensitive mostly to starlight and is shown in blue and green, respectively. The 8-micron light shows warm dust and is shown in red. The

  9. Revealing Mercury

    NASA Astrophysics Data System (ADS)

    Prockter, L. M.; Solomon, S. C.; Head, J. W.; Watters, T. R.; Murchie, S. L.; Robinson, M. S.; Chapman, C. R.; McNutt, R. L.

    2009-04-01

    The MErcury Surface, Space ENvironment, GEochemistry, and Ranging (MESSENGER) spacecraft, developed under NASA's Discovery Program, launched in August 2004. En route to insertion into orbit about Mercury in 2011, MESSENGER flies by Mercury three times. The first and second of these encounters were accomplished in January and October of 2008. These flybys viewed portions of Mercury's surface that were not observed by Mariner 10 during its reconnaissance of somewhat less than half of the planet in 1974-1975. All MESSENGER instruments operated during each flyby and returned a wealth of new data. Many of the new observations were focused on the planet's geology, including monochrome imaging at resolutions as high as 100 m/pixel, multispectral imaging in 11 filters at resolutions as high as 500 m/pixel, laser altimetry tracks extending over several thousands of kilometers, and high-resolution spectral measurements of several types of terrain. Here we present an overview of the first inferences on the global geology of Mercury from the MESSENGER observations. Whereas evidence for volcanism was equivocal from Mariner 10 data, the new MESSENGER images and altimetry provide compelling evidence that volcanism was widespread and protracted on Mercury. Color imaging reveals three common spectral units on the surface: a higher-reflectance, relatively red material occurring as a distinct class of smooth plains, typically with distinct embayment relationships interpreted to indicate volcanic emplacement; a lower-reflectance, relatively blue material typically excavated by impact craters and therefore inferred to be more common at depth; and a spectrally intermediate terrain that constitutes much of the uppermost crust. Three more minor spectral units are also seen: fresh crater ejecta, reddish material associated with rimless depressions interpreted to be volcanic centers, and high-reflectance deposits seen in some crater floors. Preliminary measurements of crater size

  10. US Department of Energy Oak Ridge Operations Environmental Management Public Involvement Plan for the Oak Ridge Reservation

    SciTech Connect

    1996-03-01

    This document was prepared in accordance with CERCLA requirements for writing community relations plans. It includes information on how the DOE Oak Ridge Operations Office prepares and executes Environmental Management Community relations activities. It is divided into three sections: the public involvement plan, public involvement in Oak Ridge, and public involvement in 1995. Four appendices are also included: environmental management in Oak Ridge; community and regional overview; key laws, agreements, and policy; and principal contacts.

  11. Field Use of NMIS at Oak Ridge

    SciTech Connect

    Chiang, L.G.; Conger, M.; Hughes, S.S.; Mattingly, J.K.; McEvers, J.A.; Mihalczo, J.T.; Mullens, J.A.; Perez, R.B.; Turner, C.R.; Uckan, T.; Valentine, T.E.

    1999-08-26

    The Nuclear Materials Identification System (NMIS), developed by the Oak Ridge National Laboratory and Oak Ridge Y-12 Plant (Y-12), has been successfully used at Y-12 for nuclear material control and accountability (NMC&A). It is particularly useful in the high gamma-ray background of storage arrays and for shielded HEU. With three systems in use at Y-12, NMIS has enhanced the NMC&A capability for verification and for confirmation of materials in storage and for HEU receipts by providing capability not available or practical by other NDA methods for safeguards. It has recently cost-effectively quantified the HEU mass and enrichment of hundreds of HEU metal items to within a total spread of {+-} 5% (3 sigma) with and mean deviations for all HEU verified of + 0.2% for mass and {minus}0.2% for enrichment. Three cart portable systems are easily moved around with minimal impact on facility operations since no permanent dedicated floor space is required. The positive impact of NMIS at the Oak Ridge Y-12 Plant is improved and more cost effective NMC&A as well as the resolution of NMC&A findings. Its operation at the Y-12 Plant is essential for compliance with the NMC&A requirements of the US Department of Energy. NMIS portability has allowed one system to be moved temporarily to the former K-25 Gaseous Diffusion Plant for characterization of a large deposit of hydrated uranyl fluoride. The impact of this NMIS application was enhanced and verified nuclear criticality safety that led to the safe removal of a large deposit originally estimated by gamma-ray spectrometry and neutron counting to contain 1300 kg of 3.3 wt% {sup 235}U material. NMIS has also been operational at Los Alamos National Laboratory and Pantex.

  12. Comprehensive integrated planning: A process for the Oak Ridge Reservation, Oak Ridge, Tennessee

    SciTech Connect

    1998-05-01

    The Oak Ridge Comprehensive Integrated Plan is intended to assist the US Department of Energy (DOE) and contractor personnel in implementing a comprehensive integrated planning process consistent with DOE Order 430.1, Life Cycle Asset Management and Oak Ridge Operations Order 430. DOE contractors are charged with developing and producing the Comprehensive Integrated Plan, which serves as a summary document, providing information from other planning efforts regarding vision statements, missions, contextual conditions, resources and facilities, decision processes, and stakeholder involvement. The Comprehensive Integrated Plan is a planning reference that identifies primary issues regarding major changes in land and facility use and serves all programs and functions on-site as well as the Oak Ridge Operations Office and DOE Headquarters. The Oak Ridge Reservation is a valuable national resource and is managed on the basis of the principles of ecosystem management and sustainable development and how mission, economic, ecological, social, and cultural factors are used to guide land- and facility-use decisions. The long-term goals of the comprehensive integrated planning process, in priority order, are to support DOE critical missions and to stimulate the economy while maintaining a quality environment.

  13. Cytotoxicity of red fluorescent protein DsRed is associated with the suppression of Bcl-xL translation.

    PubMed

    Zhou, Jun; Lin, Jian; Zhou, Cuihong; Deng, Xiaoyan; Xia, Bin

    2011-03-01

    Red fluorescent protein (RFP) DsRed and its variants are widely applied in live-cell imaging experiments. However, a major factor that restricts the application of DsRed is its cytotoxicity. Here, we report that DsRed and its variant DsRed-Express2 inhibit the expression of B-cell lymphoma-extra large (Bcl-xL) in HeLa cells by translational regulation. Over-expression of Bcl-xL can reduce the cytotoxicity of DsRed. Meanwhile, Turbo RFP, a mutant RFP from Entacmaea quadricolor, does not affect Bcl-xL expression, suggesting that cytotoxic mechanisms of RFP from different species may be varied. Our results reveal a possible mechanism for the cytotoxicity of DsRed, providing a potential strategy to improve the application of DsRed and its variants.

  14. Oak Ridge Reservation environmental report for 1991

    SciTech Connect

    Mucke, P.C.

    1992-10-01

    The first two volumes of this report present data and supporting narratives regarding the impact of the US Department of Energy's (DOE's) Oak Ridge Reservation (ORR) on its surrounding environs and the public during 1991. Volume 1 includes all narrative descriptions, summaries, and conclusions and is intended to be a stand-alone'' report for the reader who does not want to review in detail all of the 1991 data for the ORR. This volume, Volume 2, includes the detailed data formats that ensure all the environmental data are represented. Narratives are not included. The information in Vol. 2 is addressed and analyzed in Vol. 1.

  15. Oak Ridge Leadership Computing Facility Position Paper

    SciTech Connect

    Oral, H Sarp; Hill, Jason J; Thach, Kevin G; Podhorszki, Norbert; Klasky, Scott A; Rogers, James H; Shipman, Galen M

    2011-01-01

    This paper discusses the business, administration, reliability, and usability aspects of storage systems at the Oak Ridge Leadership Computing Facility (OLCF). The OLCF has developed key competencies in architecting and administration of large-scale Lustre deployments as well as HPSS archival systems. Additionally as these systems are architected, deployed, and expanded over time reliability and availability factors are a primary driver. This paper focuses on the implementation of the Spider parallel Lustre file system as well as the implementation of the HPSS archive at the OLCF.

  16. Polyphenolic compounds as chemical markers of wine ageing in contact with cherry, chestnut, false acacia, ash and oak wood.

    PubMed

    Fernández de Simón, B; Sanz, M; Cadahía, E; Martínez, J; Esteruelas, E; Muñoz, A M

    2014-01-15

    The nonanthocyanic phenolic composition of four red wines, one white, and one rosé aged using barrels and chips of cherry, chestnut, false acacia, ash and oak wood was studied by LC-DAD-ESI/MS, to identify the phenolic compounds that woods other than oak contribute to wines, and if some of them can be used as chemical markers of ageing with them. A total of 68 nonanthocyanic phenolic compounds were identified, 15 found only in wines aged with acacia wood, 6 with cherry wood, and 1 with chestnut wood. Thus, the nonanthocyanic phenolic profile could be a useful tool to identify wines aged in contact with these woods. In addition, some differences in the nonanthocyanic phenolic composition of wines were detected related to both the levels of compounds provided by each wood species and the different evolution of flavonols and flavanols in wines during ageing in barrels or in contact with chips.

  17. How does a carnivore guild utilise a substantial but unpredictable anthropogenic food source? Scavenging on hunter-shot ungulate carcasses by wild dogs/dingoes, red foxes and feral cats in south-eastern Australia revealed by camera traps.

    PubMed

    Forsyth, David M; Woodford, Luke; Moloney, Paul D; Hampton, Jordan O; Woolnough, Andrew P; Tucker, Mark

    2014-01-01

    There is much interest in understanding how anthropogenic food resources subsidise carnivore populations. Carcasses of hunter-shot ungulates are a potentially substantial food source for mammalian carnivores. The sambar deer (Rusa unicolor) is a large (≥ 150 kg) exotic ungulate that can be hunted throughout the year in south-eastern Australia, and hunters are not required to remove or bury carcasses. We investigated how wild dogs/dingoes and their hybrids (Canis lupus familiaris/dingo), red foxes (Vulpes vulpes) and feral cats (Felis catus) utilised sambar deer carcasses during the peak hunting seasons (i.e. winter and spring). We placed carcasses at 1-km intervals along each of six transects that extended 4-km into forest from farm boundaries. Visits to carcasses were monitored using camera traps, and the rate of change in edible biomass estimated at ∼ 14-day intervals. Wild dogs and foxes fed on 70% and 60% of 30 carcasses, respectively, but feral cats seldom (10%) fed on carcasses. Spatial and temporal patterns of visits to carcasses were consistent with the hypothesis that foxes avoid wild dogs. Wild dog activity peaked at carcasses 2 and 3 km from farms, a likely legacy of wild dog control, whereas fox activity peaked at carcasses 0 and 4 km from farms. Wild dog activity peaked at dawn and dusk, whereas nearly all fox activity occurred after dusk and before dawn. Neither wild dogs nor foxes remained at carcasses for long periods and the amount of feeding activity by either species was a less important predictor of the loss of edible biomass than season. Reasons for the low impacts of wild dogs and foxes on sambar deer carcass biomass include the spatially and temporally unpredictable distribution of carcasses in the landscape, the rapid rate of edible biomass decomposition in warm periods, low wild dog densities and the availability of alternative food resources. PMID:24918425

  18. How Does a Carnivore Guild Utilise a Substantial but Unpredictable Anthropogenic Food Source? Scavenging on Hunter-Shot Ungulate Carcasses by Wild Dogs/Dingoes, Red Foxes and Feral Cats in South-Eastern Australia Revealed by Camera Traps

    PubMed Central

    Forsyth, David M.; Woodford, Luke; Moloney, Paul D.; Hampton, Jordan O.; Woolnough, Andrew P.; Tucker, Mark

    2014-01-01

    There is much interest in understanding how anthropogenic food resources subsidise carnivore populations. Carcasses of hunter-shot ungulates are a potentially substantial food source for mammalian carnivores. The sambar deer (Rusa unicolor) is a large (≥150 kg) exotic ungulate that can be hunted throughout the year in south-eastern Australia, and hunters are not required to remove or bury carcasses. We investigated how wild dogs/dingoes and their hybrids (Canis lupus familiaris/dingo), red foxes (Vulpes vulpes) and feral cats (Felis catus) utilised sambar deer carcasses during the peak hunting seasons (i.e. winter and spring). We placed carcasses at 1-km intervals along each of six transects that extended 4-km into forest from farm boundaries. Visits to carcasses were monitored using camera traps, and the rate of change in edible biomass estimated at ∼14-day intervals. Wild dogs and foxes fed on 70% and 60% of 30 carcasses, respectively, but feral cats seldom (10%) fed on carcasses. Spatial and temporal patterns of visits to carcasses were consistent with the hypothesis that foxes avoid wild dogs. Wild dog activity peaked at carcasses 2 and 3 km from farms, a likely legacy of wild dog control, whereas fox activity peaked at carcasses 0 and 4 km from farms. Wild dog activity peaked at dawn and dusk, whereas nearly all fox activity occurred after dusk and before dawn. Neither wild dogs nor foxes remained at carcasses for long periods and the amount of feeding activity by either species was a less important predictor of the loss of edible biomass than season. Reasons for the low impacts of wild dogs and foxes on sambar deer carcass biomass include the spatially and temporally unpredictable distribution of carcasses in the landscape, the rapid rate of edible biomass decomposition in warm periods, low wild dog densities and the availability of alternative food resources. PMID:24918425

  19. How does a carnivore guild utilise a substantial but unpredictable anthropogenic food source? Scavenging on hunter-shot ungulate carcasses by wild dogs/dingoes, red foxes and feral cats in south-eastern Australia revealed by camera traps.

    PubMed

    Forsyth, David M; Woodford, Luke; Moloney, Paul D; Hampton, Jordan O; Woolnough, Andrew P; Tucker, Mark

    2014-01-01

    There is much interest in understanding how anthropogenic food resources subsidise carnivore populations. Carcasses of hunter-shot ungulates are a potentially substantial food source for mammalian carnivores. The sambar deer (Rusa unicolor) is a large (≥ 150 kg) exotic ungulate that can be hunted throughout the year in south-eastern Australia, and hunters are not required to remove or bury carcasses. We investigated how wild dogs/dingoes and their hybrids (Canis lupus familiaris/dingo), red foxes (Vulpes vulpes) and feral cats (Felis catus) utilised sambar deer carcasses during the peak hunting seasons (i.e. winter and spring). We placed carcasses at 1-km intervals along each of six transects that extended 4-km into forest from farm boundaries. Visits to carcasses were monitored using camera traps, and the rate of change in edible biomass estimated at ∼ 14-day intervals. Wild dogs and foxes fed on 70% and 60% of 30 carcasses, respectively, but feral cats seldom (10%) fed on carcasses. Spatial and temporal patterns of visits to carcasses were consistent with the hypothesis that foxes avoid wild dogs. Wild dog activity peaked at carcasses 2 and 3 km from farms, a likely legacy of wild dog control, whereas fox activity peaked at carcasses 0 and 4 km from farms. Wild dog activity peaked at dawn and dusk, whereas nearly all fox activity occurred after dusk and before dawn. Neither wild dogs nor foxes remained at carcasses for long periods and the amount of feeding activity by either species was a less important predictor of the loss of edible biomass than season. Reasons for the low impacts of wild dogs and foxes on sambar deer carcass biomass include the spatially and temporally unpredictable distribution of carcasses in the landscape, the rapid rate of edible biomass decomposition in warm periods, low wild dog densities and the availability of alternative food resources.

  20. Presence of Triploids among Oak Species

    PubMed Central

    Dzialuk, Artur; Chybicki, Igor; Welc, Monika; Śliwińska, Elwira; Burczyk, Jaroslaw

    2007-01-01

    Background and Aims Polyploids, organisms that have multiple sets of chromosomes, are common in certain plant and animal taxa. However, there are only a few reports of intraspecific ploidy variation within the genus Quercus. The aim of the study was to investigate the suspected ploidy level of two oaks that have unusual microsatellite banding patterns. Methods Polyploidy was investigated by using microsatellite analysis, stomata length measurements and nuclear DNA content estimation by flow cytometry. Key Results Each putative triploid tree has patterns of microsatellite variation unexpected for diploid genomes, with up to three alleles at some loci, significantly longer stomata and 1·5 times more DNA per nucleus compared with diploids. Conclusions To our knowledge, this report contains the first evidence for triploidy in Q. petraea and confirmation of this phenomenon in Q. robur. Regardless of the positive or negative aspects of the presence of triploid oaks in forest stands, it is of value to be able to screen for them. This study demonstrates that nuclear microsatellites and estimation of DNA content by flow cytometry can readily be used for this purpose. PMID:17409100

  1. The Oak Ridge Isochronous Cyclotron Refurbishment Project

    SciTech Connect

    Mendez, II, Anthony J; Ball, James B; Dowling, Darryl T; Mosko, Sigmund W; Tatum, B Alan

    2011-01-01

    The Oak Ridge Isochronous Cyclotron (ORIC) has been in operation for nearly fifty years at the Oak Ridge National Laboratory (ORNL). Presently, it serves as the driver accelerator for the ORNL Holifield Radioactive Ion Beam Facility (HRIBF), where radioactive ion beams are produced using the Isotope Separation Online (ISOL) technique for post-acceleration by the 25URC tandem electrostatic accelerator. Operability and reliability of ORIC are critical issues for the success of HRIBF and have presented increasingly difficult operational challenges for the facility in recent years. In February 2010, a trim coil failure rendered ORIC inoperable for several months. This presented HRIBF with the opportunity to undertake various repairs and maintenance upgrades aimed at restoring the full functionality of ORIC and improving the reliability to a level better than what had been typical over the previous decade. In this paper, we present details of these efforts, including the replacement of the entire trim coil set and measurements of their radial field profile. Comparison of measurements and operating tune parameters with setup code predictions will also be presented.

  2. 60 Years of Great Science (Oak Ridge National Laboratory)

    DOE R&D Accomplishments Database

    2003-01-01

    This issue of Oak Ridge National Laboratory Review (vol. 36, issue 1) highlights Oak Ridge National Laboratory's contributions in more than 30 areas of research and related activities during the past 60 years and provides glimpses of current activities that are carrying on this heritage.

  3. Exploring the Taxonomy of Oaks and Related Tree Species

    ERIC Educational Resources Information Center

    McMaster, Robert T.

    2004-01-01

    A lab in Eastern North America conducted a study to determine the taxonomic relationship between deciduous trees and several species of oaks by calculating the similarity index of all species to be studied. The study enabled students to classify the different species of oaks according to their distinct characteristics.

  4. Oak Ridge Reservation Annual Site environmental report summary for 1994

    SciTech Connect

    1995-09-01

    This document presents a summary of the information collected for the Oak Ridge Reservation 1994 site environmental report. Topics discussed include: Oak Ridge Reservation mission; ecology; environmental laws; community participation; environmental restoration; waste management; radiation effects; chemical effects; risk to public; environmental monitoring; and radionuclide migration.

  5. 77 FR 68818 - Notice of Inventory Completion: U.S. Department of Energy Oak Ridge Office, Oak Ridge, TN

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-11-16

    ... affiliation with the human remains and associated funerary object should contact the U.S. Department of Energy... funerary object in the possession of the U.S. Department of Energy Oak Ridge Office. The human remains and... acquisition of the human remains and associated funerary object, the U.S. Department of Energy Oak...

  6. Variable Red Giants--The MACHO View

    SciTech Connect

    Keller, S C; Cook, K H

    2003-01-03

    The authors present a study of the MACHO red variable population in the Large Magellanic Cloud. This study reveals six period-luminosity relations among the red variable population. Only two of these were known prior to MACHO. The results are consistent with Mira pulsation in the fundamental mode. A sequence comprising 26% of the red variable population can not be explained by pulsation. They propose a dust {kappa}-mechanism in the circumstellar environment is responsible for the long period variation of these objects. The luminosity function of the variables shows a sharp edge at the tip of the red giant branch (TRGB). This is the first clear indication of a population of variable stars within the immediate vicinity of the TRGB. The results indicate this population amounts to 8% of the RGB population near the TRGB.

  7. Red wine asthma: a controlled challenge study.

    PubMed

    Dahl, R; Henriksen, J M; Harving, H

    1986-12-01

    Drinking red wine may provoke bronchospasm in subjects with asthma. In order to reveal some of the possible agents involved in this reaction, 18 patients with a history of red wine-induced asthma were studied. They received, in a double-blind fashion, red wine with low sulfur dioxide (SO2) and high amine, high SO2 and high amine and low SO2 and low amine content. In each challenge, the wine was administered in stepwise increasing quantities until a total of 385 ml or a fall in peak expiratory flow of greater than 15% was reached. Nine subjects demonstrated a significant fall in peak flow in one or more challenges. In all cases the most severe reaction was observed after the wine with high SO2 content. The study suggests that SO2 is the most important factor in red wine-induced asthma. It is recommended that wine labels provide information on the SO2 content.

  8. Source document for waste area groupings at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Osborne, P.L.; Kuhaida, A.J., Jr.

    1996-09-01

    This document serves as a source document for Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) and other types of documents developed for and pertaining to Environmental Restoration (ER) Program activities at Oak Ridge National Laboratory (ORNL). It contains descriptions of the (1) regulatory requirements for the ORR ER Program, (2) Oak Ridge Reservation (ORR) ER Program, (3) ORNL site history and characterization, and (4) history and characterization of Waste Area Groupings (WAGS) 1-20. This document was created to save time, effort, and money for persons and organizations drafting documents for the ER Program and to improve consistency in the documents prepared for the program. By eliminating the repetitious use of selected information about the program, this document will help reduce the time and costs associated with producing program documents. By serving as a benchmark for selected information about the ER Program, this reference will help ensure that information presented in future documents is accurate and complete.

  9. Oak Ridge Health Studies phase 1 report, Volume 1: Oak Ridge Phase 1 overview

    SciTech Connect

    Yarbrough, M.I.; Van Cleave, M.L.; Turri, P.; Daniel, J.

    1993-09-01

    In July 1991, the State of Tennessee initiated the Health Studies Agreement with the United States Department of Energy to carry out independent studies of possible adverse health effects in people living in the vicinity of the Oak Ridge Reservation. The health studies focus on those effects that could have resulted or could result from exposures to chemicals and radioactivity released at the Reservation since 1942. The major focus of the first phase was to complete a Dose Reconstruction Feasibility Study. This study was designed to find out if enough data exist about chemical and radionuclide releases from the Oak Ridge Reservation to conduct a second phase. The second phase will lead to estimates of the actual amounts or the ``doses`` of various contaminants received by people as a result of off-site releases. Once the doses of various contaminants have been estimated, scientists and physicians will be better able to evaluate whether adverse health effects could have resulted from the releases.

  10. Melton Valley Storage Tanks Capacity Increase Project, Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    1995-04-01

    The US Department of Energy (DOE) proposes to construct and maintain additional storage capacity at Oak Ridge National Laboratory (ORNL), Oak Ridge, Tennessee, for liquid low-level radioactive waste (LLLW). New capacity would be provided by a facility partitioned into six individual tank vaults containing one 100,000 gallon LLLW storage tank each. The storage tanks would be located within the existing Melton Valley Storage Tank (MVST) facility. This action would require the extension of a potable water line approximately one mile from the High Flux Isotope Reactor (HFIR) area to the proposed site to provide the necessary potable water for the facility including fire protection. Alternatives considered include no-action, cease generation, storage at other ORR storage facilities, source treatment, pretreatment, and storage at other DOE facilities.

  11. Spatial distribution of oak mistletoe as it relates to habits of oak woodland frugivores.

    PubMed

    Wilson, Ethan A; Sullivan, Patrick J; Dickinson, Janis L

    2014-01-01

    This study addresses the underlying spatial distribution of oak mistletoe, Phoradendron villosum, a hemi-parasitic plant that provides a continuous supply of berries for frugivorous birds overwintering the oak savanna habitat of California's outer coast range. As the winter community of birds consuming oak mistletoe varies from group-living territorial species to birds that roam in flocks, we asked if mistletoe volume was spatially autocorrelated at the scale of persistent territories or whether the patterns predicted by long-term territory use by western bluebirds are overcome by seed dispersal by more mobile bird species. The abundance of mistletoe was mapped on trees within a 700 ha study site in Carmel Valley, California. Spatial autocorrelation of mistletoe volume was analyzed using the variogram method and spatial distribution of oak mistletoe trees was analyzed using Ripley's K and O-ring statistics. On a separate set of 45 trees, mistletoe volume was highly correlated with the volume of female, fruit-bearing plants, indicating that overall mistletoe volume is a good predictor of fruit availability. Variogram analysis showed that mistletoe volume was spatially autocorrelated up to approximately 250 m, a distance consistent with persistent territoriality of western bluebirds and philopatry of sons, which often breed next door to their parents and are more likely to remain home when their parents have abundant mistletoe. Using Ripley's K and O-ring analyses, we showed that mistletoe trees were aggregated for distances up to 558 m, but for distances between 558 to 724 m the O-ring analysis deviated from Ripley's K in showing repulsion rather than aggregation. While trees with mistletoe were aggregated at larger distances, mistletoe was spatially correlated at a smaller distance, consistent with what is expected based on persistent group territoriality of western bluebirds in winter and the extreme philopatry of their sons. PMID:25389971

  12. Tiger team assessment of the Oak Ridge Y-12 Plant, Oak Ridge, Tennessee

    SciTech Connect

    none,

    1990-02-01

    This document contains findings identified during the Tiger Team Compliance Assessment of the Department of Energy's (DOE's) Y-12 Plant in Oak Ridge, Tennessee. The Y-12 Plant Tiger Team Compliance Assessment is comprehensive in scope. It covers the Environmental, Safety, and Health (including Occupational Safety and Health Administration (OSHA) compliance), and Management areas and determines the plant's compliance with applicable federal (including DOE), state, and local regulations and requirements. 4 figs., 12 tabs.

  13. Removal action report on the Building 3001 canal at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    1997-05-01

    Oak Ridge National Laboratory (ORNL) is a federal facility managed by Lockheed Martin C, Energy Research, Inc., for the U.S. Department of Energy (DOE). ORNL on the Oak Ridge Reservation in East Tennessee at the Anderson and Roane County lines, approximately 38 km (24 miles) west of Knoxville, Tennessee, and 18 km (11 miles) southwest of downtown Oak Ridge. The Oak Ridge Graphite Reactor and its storage and transfer canal are located in Bldg. 3001 in the approximate center of Waste Area Grouping I in the ORNL main complex. 4:1 The Bldg. 3001 Storage Canal is an L-shaped, underground, reinforced-concrete structure running from the back and below the Graphite Reactor in Bldg. 3001 to a location beneath a hot cell in the adjacent Bldg. 3019. The Graphite Reactor was built in 1943 to produce small quantities of plutonium and was subsequently used to produce other isotopes for medical research before it was finally shut down in 1963. The associated canal was used to transport, under water, spent fuel slugs and other isotopes from the back of the reactor to the adjacent Bldg. 31319 hot cell for further processing. During its operation and years subsequent to operation, the canal`s concrete walls and floor became contaminated with radioisotopes from the water.This report documents the activities involved with replacing the canal water with a solid, controlled, low-strength material (CLSM) in response to a Comprehensive Environmental Response, Compensation, and Liability Act non-time-critical removal action.

  14. Site descriptions of environmental restoration units at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Kuhaida, A.J. Jr.; Parker, A.F.

    1997-02-01

    This report provides summary information on Oak Ridge National Laboratory (ORNL) Environmental Restoration (ER) sites as listed in the Oak Ridge Reservation Federal Facility Agreement (FFA), dated January 1, 1992, Appendix C. The Oak Ridge National Laboratory was built in 1943 as part of the World War II Manhattan Project. The original mission of ORNL was to produce and chemically separate the first gram-quantities of plutonium as part of the national effort to produce the atomic bomb. The current mission of ORNL is to provide applied research and development in support of the U.S. Department of Energy (DOE) programs in nuclear fusion and fission, energy conservation, fossil fuels, and other energy technologies and to perform basic scientific research in selected areas of the physical, life, and environmental sciences. ER is also tasked with clean up or mitigation of environmental impacts resulting from past waste management practices on portions of the approximately 37,000 acres within the Oak Ridge Reservation (ORR). Other installations located within the ORR are the Gaseous Diffusion Plant (K-25) and the Y-12 plant. The remedial action strategy currently integrates state and federal regulations for efficient compliance and approaches for both investigations and remediation efforts on a Waste Area Grouping (WAG) basis. As defined in the ORR FFA Quarterly Report July - September 1995, a WAG is a grouping of potentially contaminated sites based on drainage area and similar waste characteristics. These contaminated sites are further divided into four categories based on existing information concerning whether the data are generated for scoping or remedial investigation (RI) purposes. These areas are as follows: (1) Operable Units (OU); (2) Characterization Areas (CA); (3) Remedial Site Evaluation (RSE) Areas; and (4) Removal Site Evaluation (RmSE) Areas.

  15. Cobb's Red Cabbage Indicator.

    ERIC Educational Resources Information Center

    Cobb, Vicki

    1998-01-01

    Describes the use of an indicator made from the pigment in red cabbage. Cabbage is grated then soaked in water. When the water is a strong red, the cabbage is strained out. The cabbage-juice indicator is then used to test for acids and bases. Includes a list of good foods to test for acidity and alkalinity. (PVD)

  16. Oak Ridge Reservation environmental report for 1989

    SciTech Connect

    Jacobs, V.A.; Wilson, A.R.

    1990-10-01

    The first two volumes of this report are devoted to a presentation of environmental data and supporting narratives for the US Department of Energy's (DOE's) Oak Ridge Reservation (ORR) and surrounding environs during 1989. Volume 1 includes all narrative descriptions, summaries, and conclusions and is intended to be a stand-alone'' report for the ORR for the reader who does not want to review in detail all of the 1989 data. Volume 2 includes the detailed data summarized in a format to ensure that all environmental data are represented in the tables. Narratives are not included in Vol. 2. The tables in Vol. 2 are addressed in Vol. 1. For this reason, Vol. 2 cannot be considered a stand-alone report but is intended to be used in conjunction with Vol. 1. 16 figs., 194 tabs.

  17. Oak Ridge Reservation Environmental report for 1990

    SciTech Connect

    Wilson, A.R.

    1991-09-01

    The first two volumes of this report are devoted to a presentation of environmental data and supporting narratives for the US Department of Energy's (DOE's) Oak Ridge Reservation (ORR) and surrounding environs during 1990. Volume 1 includes all narrative descriptions, summaries, and conclusions and is intended to be a stand-alone'' report for the ORR for the reader who does not want to review in detail all of the 1990 data. Volume 2 includes the detailed data summarized in a format to ensure that all environmental data are represented in the tables. Narratives are not included in Vol. 2. The tables in Vol. 2 are addressed in Vol. 1. For this reason, Vol. 2 cannot be considered a stand-alone report but is intended to be used in conjunction with Vol. 1.

  18. Oak Ridge Reservation environmental report for 1988

    SciTech Connect

    Prince, N.L.

    1989-05-01

    The first two volumes of this report are devoted to a presentation of environmental data and supporting narratives for the US Department of Energy's (DOE's) Oak Ridge Reservation (ORR) and surrounding environs during 1988. Volume 1 includes all narrative descriptions, summaries, and conclusions and is intended to be a stand-alone'' report for the ORR for the reader who does not want to review in detail all of the 1988 data. Volume 2 includes the detailed data summarized in a format to ensure that all environmental data are represented in the tables. Narratives are not included in Volume 2. The tables in Volume 2 are addressed in Volume 1. For this reason, Vol. 2 cannot be considered a stand-alone report but is intended to be used in conjunction with Volume 1.

  19. Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

    PubMed Central

    2011-01-01

    Background One of the key goals of oak genomics research is to identify genes of adaptive significance. This information may help to improve the conservation of adaptive genetic variation and the management of forests to increase their health and productivity. Deep-coverage large-insert genomic libraries are a crucial tool for attaining this objective. We report herein the construction of a BAC library for Quercus robur, its characterization and an analysis of BAC end sequences. Results The EcoRI library generated consisted of 92,160 clones, 7% of which had no insert. Levels of chloroplast and mitochondrial contamination were below 3% and 1%, respectively. Mean clone insert size was estimated at 135 kb. The library represents 12 haploid genome equivalents and, the likelihood of finding a particular oak sequence of interest is greater than 99%. Genome coverage was confirmed by PCR screening of the library with 60 unique genetic loci sampled from the genetic linkage map. In total, about 20,000 high-quality BAC end sequences (BESs) were generated by sequencing 15,000 clones. Roughly 5.88% of the combined BAC end sequence length corresponded to known retroelements while ab initio repeat detection methods identified 41 additional repeats. Collectively, characterized and novel repeats account for roughly 8.94% of the genome. Further analysis of the BESs revealed 1,823 putative genes suggesting at least 29,340 genes in the oak genome. BESs were aligned with the genome sequences of Arabidopsis thaliana, Vitis vinifera and Populus trichocarpa. One putative collinear microsyntenic region encoding an alcohol acyl transferase protein was observed between oak and chromosome 2 of V. vinifera. Conclusions This BAC library provides a new resource for genomic studies, including SSR marker development, physical mapping, comparative genomics and genome sequencing. BES analysis provided insight into the structure of the oak genome. These sequences will be used in the assembly of a

  20. Site descriptions of environmental restoration units at the Oak Ridge K-25 Site, Oak Ridge, Tennessee

    SciTech Connect

    Goddard, P.L.; Legeay, A.J.; Pesce, D.S.; Stanley, A.M.

    1995-11-01

    This report, Site Descriptions of Environmental Restoration Units at the Oak Ridge K-25 Site, Oak Ridge, Tennessee, is being prepared to assimilate information on sites included in the Environmental Restoration (ER) Program of the K-25 Site, one of three major installations on the Oak Ridge Reservation (ORR) built during World War III as part of the Manhattan Project. The information included in this report will be used to establish program priorities so that resources allotted to the K-25 ER Program can be best used to decrease any risk to humans or the environment, and to determine the sequence in which any remedial activities should be conducted. This document will be updated periodically in both paper and Internet versions. Units within this report are described in individual data sheets arranged alphanumerically. Each data sheet includes entries on project status, unit location, dimensions and capacity, dates operated, present function, lifecycle operation, waste characteristics, site status, media of concern, comments, and references. Each data sheet is accompanied by a photograph of the unit, and each unit is located on one of 13 area maps. These areas, along with the sub-area, unit, and sub-unit breakdowns within them, are outlined in Appendix A. Appendix B is a summary of information on remote aerial sensing and its applicability to the ER program.

  1. Occupational dermatitis from Synacril Red 3b liquid (CI Basic Red 22).

    PubMed

    Sadhra, S; Duhra, P; Foulds, I S

    1989-11-01

    A carpet factory worker, exposed to a number of different dyes, developed a severe hand dermatitis. The handling of warm, wet and freshly-dyed yarn with unprotected hands was thought to have caused the onset of dermatitis. Patch testing indicated that the patient was sensitive to only one of the dyes handled, namely Synacril Red 3B liquid, which is based on the single dyestuff Basic Red 22 (CI 11055). Chemical analysis revealed the dyestuff to be of high purity (greater than 95%), suggesting that sensitization was caused by the Basic Red 22 dyestuff itself and not by an avoidable impurity.

  2. Oak Grove Fork Habitat Improvement Project, 1988 Annual Report.

    SciTech Connect

    Bettin, Scott

    1989-04-01

    The Lower Oak Grove Fork of the Clackamas River is a fifth-order tributary of the Clackamas River drainage supporting depressed runs of coho and chinook salmon, and summer and winter steelhead. Habitat condition rating for the Lower Oak Grove is good, but smelt production estimates are below the average for Clackamas River tributaries. Limiting factors in the 3.8 miles of the Lower Oak Grove supporting anadromous fish include an overall lack of quality spawning and rearing habitat. Beginning in 1986. measures to improve fish habitat in the Lower Oak Grove were developed in coordination with the Oregon Department of Fish and Wildlife (ODF&W) and Portland General Electric (PGE) fisheries biologists. Prior to 1986, no measures had been applied to the stream to mitigate for PGE's storage and regulation of flows in the Oak Grove Fork (Timothy Lake, Harriet Lake). Catchable rainbow trout are stocked by ODF&W two or three times a year during the trout fishing season in the lowermost portion of the Oak Grove Fork near two Forest Service campgrounds (Ripplebrook and Rainbow). The 1987 field season marked the third year of efforts to improve fish habitat of the Lower Oak Grove Fork and restore anadromous fish production. The efforts included the development of an implementation plan for habitat improvement activities in the Lower Oak Grove Fork. post-project monitoring. and maintenance of the 1986 improvement structures. No new structures were constructed or placed in 1987. Fiscal year 1988 brought a multitude of changes which delayed implementation of plans developed in 1987. The most prominent change was the withdrawal of the proposed Spotted Owl Habitat Area (SOHA) which overlapped the Oak Grove project implementation area. Another was the change in the Forest Service biologist responsible for implementation and design of this project.

  3. Urban environment of New York City promotes growth in northern red oak seedlings.

    PubMed

    Searle, Stephanie Y; Turnbull, Matthew H; Boelman, Natalie T; Schuster, William S F; Yakir, Dan; Griffin, Kevin L

    2012-04-01

    Urbanization is accelerating across the globe, elevating the importance of studying urban ecology. Urban environments exhibit several factors affecting plant growth and function, including high temperatures (particularly at night), CO(2) concentrations and atmospheric nitrogen deposition. We investigated the effects of urban environments on growth in Quercus rubra L. seedlings. We grew seedlings from acorns for one season at four sites along an urban-rural transect from Central Park in New York City to the Catskill Mountains in upstate New York (difference in average maximum temperatures of 2.4 °C; difference in minimum temperatures of 4.6 °C). In addition, we grew Q. rubra seedlings in growth cabinets (GCs) mimicking the seasonal differential between the city and rural sites (based on a 5-year average). In the field experiment, we found an eightfold increase in biomass in urban-grown seedlings relative to those grown at rural sites. This difference was primarily related to changes in growth allocation. Urban-grown seedlings and seedlings grown at urban temperatures in the GCs exhibited a lower root: shoot ratio (urban ~0.8, rural/remote ~1.5), reducing below-ground carbon costs associated with construction and maintenance. These urban seedlings instead allocated more growth to leaves than did rural-grown seedlings, resulting in 10-fold greater photosynthetic area but no difference in photosynthetic capacity of foliage per unit area. Seedlings grown at urban temperatures in both the field and GC experiments had higher leaf nitrogen concentrations per unit area than those grown at cooler temperatures (increases of 23% in field, 32% in GC). Lastly, we measured threefold greater (13)C enrichment of respired CO(2) (relative to substrate) in urban-grown leaves than at other sites, which may suggest greater allocation of respiratory function to growth over maintenance. It also shows that lack of differences in total R flux in response to environmental conditions may mask dramatic shifts in respiratory functioning. Overall, our findings indicating greater seedling growth and establishment at a critical regeneration phase of forest development may have important implications for the ecology of urban forests as well as the predicted growth of the terrestrial biosphere in temperate regions in response to climate change.

  4. Oak Ridge Dose Reconstruction Project Summary Report; Reports of the Oak Ridge Dose Reconstruction, Vol. 7

    SciTech Connect

    Thomas E. Widner; et. al.

    1999-07-01

    In the early 1990s, concern about the Oak Ridge Reservation's past releases of contaminants to the environment prompted Tennessee's public health officials to pursue an in-depth study of potential off-site health effects at Oak Ridge. This study, the Oak Ridge dose reconstruction, was supported by an agreement between the U.S. Department of Energy (DOE) and the State of Tennessee, and was overseen by a 12-member panel of individuals appointed by Tennessee's Commissioner of Health. The panel requested that the principal investigator for the project prepare the following report, ''Oak Ridge Dose Reconstruction Project Summary Report,'' to serve the following purposes: (1) summarize in a single, less technical report, the methods and results of the various investigations that comprised the Phase II of the dose reconstruction; (2) describe the systematic searching of classified and unclassified historical records that was a vital component of the project; and (3) summarize the less detailed, screening-level assessments that were performed to evaluate the potential health significance of a number of materials, such a uranium, whose priority did not require a complete dose reconstruction effort. This report describes each major step of the dose reconstruction study: (1) the review of thousands of historical records to obtain information relating to past operations at each facility; (2) estimation of the quantity and timing of releases of radioiodines from X-10, of mercury from Y-12, of PCB's from all facilities, and of cesium-137 and other radionuclides from White Oak Creek; (3) evaluation of the routes taken by these contaminants through the environment to nearby populations; and (4) estimation of doses and health risks to exposed groups. Calculations found the highest excess cancer risks for a female born in 1952 who drank goat milk; the highest non-cancer health risk was for children in a farm family exposed to PCBs in and near East Fork Poplar Creek. More detailed

  5. Metagenomic studies of the Red Sea.

    PubMed

    Behzad, Hayedeh; Ibarra, Martin Augusto; Mineta, Katsuhiko; Gojobori, Takashi

    2016-02-01

    Metagenomics has significantly advanced the field of marine microbial ecology, revealing the vast diversity of previously unknown microbial life forms in different marine niches. The tremendous amount of data generated has enabled identification of a large number of microbial genes (metagenomes), their community interactions, adaptation mechanisms, and their potential applications in pharmaceutical and biotechnology-based industries. Comparative metagenomics reveals that microbial diversity is a function of the local environment, meaning that unique or unusual environments typically harbor novel microbial species with unique genes and metabolic pathways. The Red Sea has an abundance of unique characteristics; however, its microbiota is one of the least studied among marine environments. The Red Sea harbors approximately 25 hot anoxic brine pools, plus a vibrant coral reef ecosystem. Physiochemical studies describe the Red Sea as an oligotrophic environment that contains one of the warmest and saltiest waters in the world with year-round high UV radiations. These characteristics are believed to have shaped the evolution of microbial communities in the Red Sea. Over-representation of genes involved in DNA repair, high-intensity light responses, and osmoregulation were found in the Red Sea metagenomic databases suggesting acquisition of specific environmental adaptation by the Red Sea microbiota. The Red Sea brine pools harbor a diverse range of halophilic and thermophilic bacterial and archaeal communities, which are potential sources of enzymes for pharmaceutical and biotechnology-based application. Understanding the mechanisms of these adaptations and their function within the larger ecosystem could also prove useful in light of predicted global warming scenarios where global ocean temperatures are expected to rise by 1-3°C in the next few decades. In this review, we provide an overview of the published metagenomic studies that were conducted in the Red Sea, and

  6. Metagenomic studies of the Red Sea.

    PubMed

    Behzad, Hayedeh; Ibarra, Martin Augusto; Mineta, Katsuhiko; Gojobori, Takashi

    2016-02-01

    Metagenomics has significantly advanced the field of marine microbial ecology, revealing the vast diversity of previously unknown microbial life forms in different marine niches. The tremendous amount of data generated has enabled identification of a large number of microbial genes (metagenomes), their community interactions, adaptation mechanisms, and their potential applications in pharmaceutical and biotechnology-based industries. Comparative metagenomics reveals that microbial diversity is a function of the local environment, meaning that unique or unusual environments typically harbor novel microbial species with unique genes and metabolic pathways. The Red Sea has an abundance of unique characteristics; however, its microbiota is one of the least studied among marine environments. The Red Sea harbors approximately 25 hot anoxic brine pools, plus a vibrant coral reef ecosystem. Physiochemical studies describe the Red Sea as an oligotrophic environment that contains one of the warmest and saltiest waters in the world with year-round high UV radiations. These characteristics are believed to have shaped the evolution of microbial communities in the Red Sea. Over-representation of genes involved in DNA repair, high-intensity light responses, and osmoregulation were found in the Red Sea metagenomic databases suggesting acquisition of specific environmental adaptation by the Red Sea microbiota. The Red Sea brine pools harbor a diverse range of halophilic and thermophilic bacterial and archaeal communities, which are potential sources of enzymes for pharmaceutical and biotechnology-based application. Understanding the mechanisms of these adaptations and their function within the larger ecosystem could also prove useful in light of predicted global warming scenarios where global ocean temperatures are expected to rise by 1-3°C in the next few decades. In this review, we provide an overview of the published metagenomic studies that were conducted in the Red Sea, and

  7. Responses of the two‐spotted oak buprestid, Agrilus biguttatus (Coleoptera: Buprestidae), to host tree volatiles

    PubMed Central

    Woodcock, Christine M; Sumner, Mary E; Caulfield, John C; Reed, Katy; Inward, Daegan JG; Leather, Simon R; Pickett, John A; Birkett, Michael A; Denman, Sandra

    2016-01-01

    Abstract BACKGROUND Agrilus bigutattus (Fabricius) is a forest pest of increasing importance in the United Kingdom. The larvae damage weakened native oaks and are thought to contribute to premature tree death. Suspected links with acute oak decline (AOD) are not yet confirmed, but AOD‐predisposed trees appear to become more susceptible to A. biguttatus attack. Thus, management may be necessary for control of this insect. To explore the possibility of monitoring beetle populations by baited traps, the host tree volatiles regulating A. biguttatus–oak interactions were studied. RESULTS Biologically active volatile organic compounds in dynamic headspace extracts of oak foliage and bark were identified initially by coupled gas chromatography–electroantennography (GC‐EAG) and GC–mass spectrometry (GC‐MS), and the structures were confirmed by GC coinjection with authentic compounds. Of two synthetic blends of these compounds comprising the active leaf volatiles, the simpler one containing three components evoked strongly positive behavioural responses in four‐arm olfactometer tests with virgin females and males, although fresh leaf material was more efficient than the blend. The other blend, comprising a five‐component mixture made up of bark volatiles, proved to be as behaviourally active for gravid females as bark tissue. CONCLUSIONS These initial results on A. biguttatus chemical ecology reveal aspects of the role of attractive tree volatiles in the host‐finding of beetles and underpin the development of semiochemically based surveillance strategies for this forest insect. © 2015 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. PMID:26663022

  8. 75 FR 82001 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-12-29

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act... 12, 2011, 6 p.m. ADDRESSES: DOE Information Center, 475 Oak Ridge Turnpike, Oak Ridge,...

  9. 77 FR 45345 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-07-31

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Oak Ridge Operations Office, P.O. Box 2001, EM-90, Oak Ridge, TN 37831. Phone (865) 241-3315; Fax...

  10. 76 FR 1415 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-01-10

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... January 12, 2011, ] meeting of the Environmental Management Site-Specific Advisory Board (EM SSAB), Oak... Coordinator, Department of Energy Oak Ridge Operations Office, P.O. Box 2001, EM-90, Oak Ridge, TN...

  11. 75 FR 43518 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-07-26

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub..., Department of Energy Oak Ridge Operations Office, P.O. Box 2001, EM-90, Oak Ridge, TN 37831. Phone (865)...

  12. Technical background information for the environmental and safety report, Volume 4: White Oak Lake and Dam

    SciTech Connect

    Oakes, T.W.; Kelly, B.A.; Ohnesorge, W.F.; Eldridge, J.S.; Bird, J.C.; Shank, K.E.; Tsakeres, F.S.

    1982-03-01

    This report has been prepared to provide background information on White Oak Lake for the Oak Ridge National Laboratory Environmental and Safety Report. The paper presents the history of White Oak Dam and Lake and describes the hydrological conditions of the White Oak Creek watershed. Past and present sediment and water data are included; pathway analyses are described in detail.

  13. Screening of contaminants in Waste Area Grouping 2 at Oak Ridge National Laboratory, Oak Ridge, Tennessee. Environmental Restoration Program

    SciTech Connect

    Blaylock, B.G.; Frank, M.L.; Hoffman, F.O.; Hook, L.A.; Suter, G.W.; Watts, J.A.

    1992-07-01

    Waste Area Grouping 2 (WAG 2) of the Oak Ridge National Laboratory (ORNL) is located in the White Oak Creek Watershed and is composed of White Oak Creek Embayment, White Oak Lake and associated floodplain, and portions of White Oak Creek (WOC) and Melton Branch downstream of ORNL facilities. Contaminants leaving other ORNL WAGs in the WOC watershed pass through WAG 2 before entering the Clinch River. Health and ecological risk screening analyses were conducted on contaminants in WAG 2 to determine which contaminants were of concern and would require immediate consideration for remedial action and which contaminants could be assigned a low priority or further study. For screening purposes, WAG 2 was divided into four geographic reaches: Reach 1, a portion of WOC; Reach 2, Melton Branch; Reach 3, White Oak Lake and the floodplain area to the weirs on WOC and Melton Branch; and Reach 4, the White Oak Creek Embayment, for which an independent screening analysis has been completed. Screening analyses were conducted using data bases compiled from existing data on carcinogenic and noncarcinogenic contaminants, which included organics, inorganics, and radionuclides. Contaminants for which at least one ample had a concentration above the level of detection were placed in a detectable contaminants data base. Those contaminants for which all samples were below the level of detection were placed in a nondetectable contaminants data base.

  14. The Tale of Red Emmy: An Irish Witch in Appalachia.

    ERIC Educational Resources Information Center

    Wagaman, Gena D.

    The Appalachian "Tale of Red Emmy" presented in the novel "Oral History" by Lee Smith (1983), reveals both an Irish origin and an American transformation. Granny Younger, one of Smith's narrators, tells of a curse visited on four generations of the Cantrell family after Almarine Cantrell chanced upon the witch Red Emmy in the wilds of the…

  15. [Hypopharyngeal carcinoma and red ear drum].

    PubMed

    Bender, B; Widmann, G; Riechelmann, H; Schmutzhard, J

    2011-04-01

    A 46-year-old male patient with an unresectable hypopharyngeal carcinoma was treated with primary radio-chemotherapy. At follow-up, the patient presented with a red ear drum and combined hearing loss. Because of radiotherapy-induced tubal dysfunction, paracentesis was performed. Biopsy of the polypoid middle ear mucosa revealed petrous bone infiltration of hypopharyngeal carcinoma. MRI studies revealed paracarotideal tumor infiltration to the petrous bone and the middle ear arising from a cervical retropharyngeal lymph node metastasis. PMID:20963385

  16. Criticality emergency planning at Oak Ridge National Laboratory

    SciTech Connect

    Green, J.H.; Cain, G.C.

    1983-01-01

    A plan to protect personnel and control the spread of contamination in the event of a radiation accident at Oak Ridge National Laboratory (ORNL) is outlined. Procedures and personnel are presented. (ACK)

  17. 60 years of great science [Oak Ridge National Laboratory

    SciTech Connect

    2003-01-01

    This issue highlights Oak Ridge National Laboratory's contributions in more than 30 areas of research and related activities during the past 60 years and provides glimpses of current activities that are carrying on this heritage.

  18. Technical Evaluation of Oak Ridge Filter Test Facility

    SciTech Connect

    KRISKOVICH, J.R.

    2002-01-25

    Two evaluations of the Oak Ridge Department of Energy (DOE) Filter Test Facility (FTF) were performed on December 11 and 12, 2001, and consisted of a quality assurance and a technical evaluation. This report documents results of the technical evaluation.

  19. Science and Technology at Oak Ridge National Laboratory

    ScienceCinema

    Mason, Thomas

    2016-07-12

    ORNL Director Thom Mason explains the groundbreaking work in neutron sciences, supercomputing, clean energy, advanced materials, nuclear research, and global security taking place at the Department of Energy's Office of Science laboratory in Oak Ridge, Tenn.

  20. 97. HISTORIC PHOTOGRAPH, VIEW OF 'LAPHAM OAK,' NEW CANAAN, CA. ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    97. HISTORIC PHOTOGRAPH, VIEW OF 'LAPHAM OAK,' NEW CANAAN, CA. 1940. FROM PUBLIC WORKS COMMISSIONER'S REPORT. COLLECTION CONNECTICUT STATE LIBRARY AND ARCHIVES. - Merritt Parkway, Beginning in Greenwich & running 38 miles to Stratford, Greenwich, Fairfield County, CT

  1. Detail view of bronze door. Note oak branches with acorns ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    Detail view of bronze door. Note oak branches with acorns in the left panels and olive branches with olives in right. - Flanders Field American Cemetery & Memorial, Chapel, Wortegemseweg 117, Waregem, West Flanders (Belgium)

  2. 19. DETAIL VIEW OF SKIFF BOW WITH OAK STEM AND ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    19. DETAIL VIEW OF SKIFF BOW WITH OAK STEM AND FRAMES PLANKED IN CEDAR USING COPPER CLINCH NAILS. TRANSOM OF SECOND SKIFF CAN BE SEEN BACKGROUND. - Lowell's Boat Shop, 459 Main Street, Amesbury, Essex County, MA

  3. Science and Technology at Oak Ridge National Laboratory

    SciTech Connect

    Mason, Thomas

    2012-11-01

    ORNL Director Thom Mason explains the groundbreaking work in neutron sciences, supercomputing, clean energy, advanced materials, nuclear research, and global security taking place at the Department of Energy's Office of Science laboratory in Oak Ridge, Tenn.

  4. The Oak Ridge Refrigerant Management Program

    NASA Technical Reports Server (NTRS)

    Kevil, Thomas H.

    1995-01-01

    For many years, chlorofluorocarbons (CFC's) have been used by the Department of Energy's (DOE) Oak Ridge Y-12 Plant in air conditioning and process refrigeration systems. However, Title 6 of the Clean Air Act Amendments (CAAA) and Executive Order 12843 (Procurement Requirements and Policies for Federal Agencies for Ozone Depleting Substances) signed by President Clinton require, as policy, that all federal agencies maximize their use of safe, alternate refrigerants and minimize, where economically practical, the use of Class 1 refrigerants. Unfortunately, many government facilities and industrial plants have no plan or strategy in place to make this changeover, even though their air conditioning and process refrigeration equipment may not be sustainable after CFC production ends December 31, 1995. The Y-12 Plant in Oak Ridge, Tennessee, has taken an aggressive approach to complying with the CAAA and is working with private industry and other government agencies to solve tough manufacturing and application problems associated with CFC and hydrochlorofluorocarbon (HCFC) alternatives. Y-12 was the first DOE Defense Program (DP) facility to develop a long-range Stratospheric Ozone Protection Plan for refrigerant management for compliance with the CAAA. It was also the first DOE DP facility to complete detailed engineering studies on retrofitting and replacing all air conditioning and process refrigeration equipment to enable operation with alternate refrigerants. The management plan and engineering studies are models for use by other government agencies, manufacturing plants, and private industry. This presentation identifies some of the hidden pitfalls to be encountered in the accelerated phaseout schedule of CFC's and explains how to overcome and prevent these problems. In addition, it outlines the general issues that must be considered when addressing the phase-out of ozone depleting substances and gives some 'lessons learned' by Y-12 from its Refrigerant Management

  5. Nile-Red-nanoclay hybrids: red emissive optical probes for use in aqueous dispersion.

    PubMed

    Felbeck, Tom; Behnke, Thomas; Hoffmann, Katrin; Grabolle, Markus; Lezhnina, Marina M; Kynast, Ulrich H; Resch-Genger, Ute

    2013-09-10

    Water-dispersible and (bio)functionalizable nanoclays have a considerable potential as inexpensive carriers for organic molecules like drugs and fluorophores. Aiming at simple design strategies for red-emissive optical probes for the life sciences from commercial precursors with minimum synthetic effort, we systematically studied the dye loading behavior and stability of differently functionalized laponites. Here, we present a comprehensive study of the absorption and emission properties of the red emissive hydrophobic and neutral dye Nile Red, a well-known polarity probe, which is almost insoluble and nonemissive in water. Adsorption of this probe onto disk-shaped nanoclays was studied in aqueous dispersion as function of dye concentration, in the absence and presence of the cationic surfactant cetyltrimethylammonium bromide (CTAB) assisting dye loading, and as a function of pH. This laponite loading strategy yields strongly fluorescent nanoclay suspensions with a fluorescence quantum yield of 0.34 at low dye loading concentration. The dye concentration-, CTAB-, and pH-dependent absorption, fluorescence emission, and fluorescence excitation spectra of the Nile-Red-nanoclay suspensions suggest the formation of several Nile Red species including emissive Nile Red monomers facing a polar environment, nonemissive H-type dimers, and protonated Nile Red molecules that are also nonfluorescent. Formation of all nonemissive Nile Red species could be suppressed by modification of the laponite with CTAB. This underlines the great potential of properly modified and functionalized laponite nanodisks as platform for optical probes with drug delivery capacities, for example, for tumor and therapy imaging. Moreover, comparison of the Nile Red dimer absorption spectra with absorption spectra of previously studied Nile Red aggregates in dendrimer systems and micelles and other literature systems reveals a considerable dependence of the dimer absorption band on microenvironment

  6. Red Bull Stratos Presentation

    NASA Video Gallery

    Red Bull Stratos High Performance Director Andy Walshe & Technical Project Director Art Thompson share the Stratos story with JSC. Supported by a team of experts, Felix Baumgartner reached 128,100 ...

  7. The Oak Ridge Reservation Annual Site Environmental Report Summary, 2007

    SciTech Connect

    None, None

    2009-02-28

    The Oak Ridge Reservation Annual Site Environmental Report is prepared and published each year to inform the public of the environmental activities that take place on the reservation and in the surrounding areas. It is written to comply with DOE Order 231.1A, Environment, Safety, and Health Reporting. This document has been prepared to present the highlights of the Oak Ridge Reservation Annual Site Environmental Report 2007 in an easy-to-read, summary format.

  8. Search for the Neutron Electric Dipole Moment at the SNS at Oak Ridge

    SciTech Connect

    Kolarkar, Ameya

    2010-02-10

    The possible existence of a non-zero electric dipole moment (EDM) of the neutron is of fundamental interest for our understanding of the nature of electro-weak and strong interactions. The experimental search for this moment has the potential to reveal new sources of T and CP violation and to challenge calculations that propose extensions to the Standard Model. A new experiment being developed at the Spallation Neutron Source (SNS) at the Oak Ridge National Laboratory seeks to lower the current EDM limit of the neutron by a factor of 50 to 100 over the present upper limit of 2.9x10{sup -26} e cm.

  9. Whence the red panda?

    PubMed

    Flynn, J J; Nedbal, M A; Dragoo, J W; Honeycutt, R L

    2000-11-01

    The evolutionary history of the red panda (Ailurus fulgens) plays a pivotal role in the higher-level phylogeny of the "bear-like" arctoid carnivoran mammals. Characters from morphology and molecules have provided inconsistent evidence for placement of the red panda. Whereas it certainly is an arctoid, there has been major controversy about whether it should be placed with the bears (ursids), ursids plus pinnipeds (seals, sea lions, walrus), raccoons (procyonids), musteloids (raccoons plus weasels, skunks, otters, and badgers [mustelids]), or as a monotypic lineage of uncertain phylogenetic affinities. Nucleotide sequence data from three mitochondrial genes and one nuclear intron were analyzed, with more complete taxonomic sampling of relevant taxa (arctoids) than previously available in analyses of primary molecular data, to clarify the phylogenetic relationships of the red panda to other arctoid carnivorans. This study provides detailed phylogenetic analyses (both parsimony and maximum-likelihood) of primary character data for arctoid carnivorans, including bootstrap and decay indices for all arctoid nodes, and three statistical tests of alternative phylogenetic hypotheses for the placement of the red panda. Combined phylogenetic analyses reject the hypotheses that the red panda is most closely related to the bears (ursids) or to the raccoons (procyonids). Rather, evidence from nucleotide sequences strongly support placement of the red panda within a broad Musteloidea (sensu lato) clade, including three major lineages (the red panda, the skunks [mephitids], and a clearly monophyletic clade of procyonids plus mustelids [sensu stricto, excluding skunks]). Within the Musteloidea, interrelationships of the three major lineages are unclear and probably are best considered an unresolved trichotomy. These data provide compelling evidence for the relationships of the red panda and demonstrate that small taxonomic sample sizes can result in misleading or possibly erroneous

  10. Whence the red panda?

    PubMed

    Flynn, J J; Nedbal, M A; Dragoo, J W; Honeycutt, R L

    2000-11-01

    The evolutionary history of the red panda (Ailurus fulgens) plays a pivotal role in the higher-level phylogeny of the "bear-like" arctoid carnivoran mammals. Characters from morphology and molecules have provided inconsistent evidence for placement of the red panda. Whereas it certainly is an arctoid, there has been major controversy about whether it should be placed with the bears (ursids), ursids plus pinnipeds (seals, sea lions, walrus), raccoons (procyonids), musteloids (raccoons plus weasels, skunks, otters, and badgers [mustelids]), or as a monotypic lineage of uncertain phylogenetic affinities. Nucleotide sequence data from three mitochondrial genes and one nuclear intron were analyzed, with more complete taxonomic sampling of relevant taxa (arctoids) than previously available in analyses of primary molecular data, to clarify the phylogenetic relationships of the red panda to other arctoid carnivorans. This study provides detailed phylogenetic analyses (both parsimony and maximum-likelihood) of primary character data for arctoid carnivorans, including bootstrap and decay indices for all arctoid nodes, and three statistical tests of alternative phylogenetic hypotheses for the placement of the red panda. Combined phylogenetic analyses reject the hypotheses that the red panda is most closely related to the bears (ursids) or to the raccoons (procyonids). Rather, evidence from nucleotide sequences strongly support placement of the red panda within a broad Musteloidea (sensu lato) clade, including three major lineages (the red panda, the skunks [mephitids], and a clearly monophyletic clade of procyonids plus mustelids [sensu stricto, excluding skunks]). Within the Musteloidea, interrelationships of the three major lineages are unclear and probably are best considered an unresolved trichotomy. These data provide compelling evidence for the relationships of the red panda and demonstrate that small taxonomic sample sizes can result in misleading or possibly erroneous

  11. Experimental and modeling studies of ultrasound-assisted release of phenolics from oak chips into model wine.

    PubMed

    Tao, Yang; Zhang, Zhihang; Sun, Da-Wen

    2014-09-01

    The enhancement of release of oak-related compounds from oak chips during wine aging with oak chips may interest the winemaking industry. In this study, the 25-kHz ultrasound waves were used to intensify the mass transfer of phenolics from oak chips into a model wine. The influences of acoustic energy density (6.3-25.8 W/L) and temperature (15-25 °C) on the release kinetics of total phenolics were investigated systematically. The results exhibited that the total phenolic yield released was not affected by acoustic energy density significantly whereas it increased with the increase of temperature during sonication. Furthermore, to describe the mechanism of mass transfer of phenolics in model wine under ultrasonic field, the release kinetics of total phenolics was simulated by both a second-order kinetic model and a diffusion model. The modeling results revealed that the equilibrium concentration of total phenolics in model wine, the initial release rate and effective diffusivity of total phenolics generally increased with acoustic energy density and temperature. In addition, temperature had a negative effect on the second-order release rate constant whereas acoustic energy density had an opposite effect.

  12. Red cell metabolism in red and grey kangaroos.

    PubMed

    Agar, N S

    1977-12-15

    Glucose utilization, lactate production and glutathione regeneration were measured in the red blood cells of 2 species of Australian Marsupials, Eastern grey Kangaroo (Macropus gigantus) and red kangaroo (Macropus rufus), and were found to be significantly lower in the red blood cells from grey than that of red kangaroos.

  13. Decomposition of oak leaf litter and millipede faecal pellets in soil under temperate mixed oak forest

    NASA Astrophysics Data System (ADS)

    Tajovský, Karel; Šimek, Miloslav; Háněl, Ladislav; Šantrůčková, Hana; Frouz, Jan

    2015-04-01

    The millipedes Glomeris hexasticha (Diplopoda, Glomerida) were maintained under laboratory conditions and fed on oak leaf litter collected from a mixed oak forest (Abieto-Quercetum) in South Bohemia, Czech Republic. Every fourth day litter was changed and produced faecal pellets were separated and afterwards analysed. Content of organic carbon and C:N ratio lowered in faecal pellets as compared with consumed litter. Changes in content of chemical elements (P, K, Ca, Mg, Na) were recognised as those characteristic for the first stage of degradation of plant material. Samples of faecal pellets and oak leaf litter were then exposed in mesh bags between the F and H layers of forest soil for up to one year, subsequently harvested and analysed. A higher rate of decomposition of exposed litter than that of faecal pellets was found during the first two weeks. After 1-year exposure, the weight of litter was reduced to 51%, while that of pellets to 58% only, although the observed activity of present biotic components (algae, protozoans, nematodes; CO2 production, nitrogenase activity) in faecal pellets was higher as compared with litter. Different micro-morphological changes were observed in exposed litter and in pellets although these materials originated from the same initial sources. Comparing to intact leaf litter, another structural and functional processes occurred in pellets due to the fragmentation of plant material by millipedes. Both laboratory and field experiments showed that the millipede faecal pellets are not only a focal point of biodegradation activity in upper soil layers, but also confirmed that millipede feces undergo a slower decomposition than original leaf litter.

  14. Radioisotope production and management at Oak Ridge National Laboratory

    SciTech Connect

    Collins, E.D.; Aaron, W.S.; Alexander, C.W.; Bigelow, J.E.; Parks, J.T.; Tracy, J.G.; Wham, R.M.

    1994-09-01

    The production of radioisotopes has been one of the basic activities at Oak Ridge since the end of World War II. The importance of this work was best described by Alvin Weinberg, former Laboratory Director, when he wrote ``... If God has a golden book and writes down what it is that Oak Ridge National Laboratory did that had the biggest influence on science, I would guess that was the production and distribution of isotopes.`` Radioisotopes production continues to be an important aspect of Oak Ridge programs today and of those planned for the future. Past activities, current projects, and future plans and potentials will be described briefly in this paper. Also, some of the major issues facing the continued production of radioisotopes will be described. The scope of the program has always been primarily that of process development, followed by special batch-type productions, where no other supply exists. The technology developed has been available for adoption by US commercial corporations, and in cases where this has occurred, Oak Ridge has withdrawn as a supplier of the particular isotopes involved. One method of production that will not be described is that of target bombardment with an accelerator. This method was used at Oak Ridge prior to 1978 in the 86-inch Cyclotron. However, this method has not been used at Oak Ridge since then for radioisotope production, except as a research tool.

  15. Mesoscopic structural analysis of bedrock exposures at the Oak Ridge K-25 Site, Oak Ridge, Tennessee

    SciTech Connect

    Lemiszki, P.J.

    1995-07-01

    This document presents the detailed study of outcrop of mesoscopic structures during the geologic mapping completed in 1992-1993. The purpose of this study was to document the geometry and style of outcrop scale structures, such as fractures and faults and relate them to map scale structures present in the Oak Ridge K-25 Area. This report was prepared to document site characterization data collected during the scoping phase investigations in accordance with the requirements of the Comprehensive Environmental Response, Compensation, and Liability Act.

  16. Data Sharing Report Characterization of Isotope Row Facilities Oak Ridge National Laboratory Oak Ridge TN

    SciTech Connect

    Weaver, Phyllis C

    2013-12-12

    The U.S. Department of Energy (DOE) Oak Ridge Office of Environmental Management (EM-OR) requested that Oak Ridge Associated Universities (ORAU), working under the Oak Ridge Institute for Science and Education (ORISE) contract, provide technical and independent waste management planning support using funds provided by the American Recovery and Reinvestment Act (ARRA). Specifically, DOE EM-OR requested ORAU to plan and implement a survey approach, focused on characterizing the Isotope Row Facilities located at the Oak Ridge National Laboratory (ORNL) for future determination of an appropriate disposition pathway for building debris and systems, should the buildings be demolished. The characterization effort was designed to identify and quantify radiological and chemical contamination associated with building structures and process systems. The Isotope Row Facilities discussed in this report include Bldgs. 3030, 3031, 3032, 3033, 3033A, 3034, 3036, 3093, and 3118, and are located in the northeast quadrant of the main ORNL campus area, between Hillside and Central Avenues. Construction of the isotope production facilities was initiated in the late 1940s, with the exception of Bldgs. 3033A and 3118, which were enclosed in the early 1960s. The Isotope Row facilities were intended for the purpose of light industrial use for the processing, assemblage, and storage of radionuclides used for a variety of applications (ORNL 1952 and ORAU 2013). The Isotope Row Facilities provided laboratory and support services as part of the Isotopes Production and Distribution Program until 1989 when DOE mandated their shutdown (ORNL 1990). These facilities performed diverse research and developmental experiments in support of isotopes production. As a result of the many years of operations, various projects, and final cessation of operations, production was followed by inclusion into the surveillance and maintenance (S&M) project for eventual decontamination and decommissioning (D&D). The

  17. Geophysical Surveys of a Known Karst Feature, Oak Ridge Y-12 Plant, Oak Ridge, Tennessee

    SciTech Connect

    Doll, W.E.; Nyquist, J.E.; Carpenter, P.J.; Kaufmann, R.D.; Carr, B.J.

    1998-12-01

    Geophysical data were acquired at a site on the Oak Ridge Reservation, Tennessee to determine the characteristics of a mud-filled void and to evaluate the effectiveness of a suite of geophysical methods at the site. Methods that were used included microgravity, electrical resistivity, and seismic refraction. Both microgravity and resistivity were able to detect the void as well as overlying structural features. The seismic data provide bedrock depth control for the other two methods, and show other effects that are caused by the void.

  18. Project plan for the Background Soil Characterization Project on the Oak Ridge Reservation, Oak Ridge, Tennessee

    SciTech Connect

    Not Available

    1992-08-01

    The Background Soil characterization Project (BSCP) will provide background concentration levels of selected metals, organic compounds, and radionuclides in soils from uncontaminated on-site areas at the Oak Ridge Reservation (ORR), and off-site in the western part of Roane County and the eastern part of Anderson County. The BSCP will establish a database, recommend how to use the data for contaminated site assessment, and provide estimates of the potential human health and environmental risks associated with the background level concentrations of potentially hazardous constituents.

  19. INDEPENDENT VERIFICATION OF THE BUILDING 3550 SLAB AT OAK RIDGE NATIONAL LABORATORY OAK RIDGE, TENNESSEE

    SciTech Connect

    Weaver, Phyllis C.

    2012-05-08

    The Oak Ridge Institute for Science and Education (ORISE) has completed the independent verification survey of the Building 3550 Slab. The results of this effort are provided. The objective of this verification survey is to provide independent review and field assessment of remediation actions conducted by Safety and Ecology Corporation (SEC) to document that the final radiological condition of the slab meets the release guidelines. Verification survey activities on the Building 3550 Slab that included scans, measurements, and the collection of smears. Scans for alpha, alpha plus beta, and gamma activity identified several areas that were investigated.

  20. Geophysical Surveys of a Known Karst Feature, Oak Ridge Y-12 Plant, Oak Ridge, Tennessee

    SciTech Connect

    Carpenter, P.J.; Carr, B.J.; Doll, W.E.; Kaufmann, R.D.; Nyquist, J.E.

    1999-11-14

    Geophysical data were acquired at a site on the Oak Ridge Reservation, Tennessee to determine the characteristics of a mud-filled void and to evaluate the effectiveness of a suite of geophysical methods at the site. Methods that were used included microgravity, electrical resistivity, and seismic refraction. Both microgravity and resistivity were able to detect the void as well as overlying structural features. The seismic data provide bedrock depth control for the other two methods, and show other effects that are caused by the void.

  1. Leaf drop affects herbivory in oaks.

    PubMed

    Pearse, Ian S; Karban, Richard

    2013-11-01

    Leaf phenology is important to herbivores, but the timing and extent of leaf drop has not played an important role in our understanding of herbivore interactions with deciduous plants. Using phylogenetic general least squares regression, we compared the phenology of leaves of 55 oak species in a common garden with the abundance of leaf miners on those trees. Mine abundance was highest on trees with an intermediate leaf retention index, i.e. trees that lost most, but not all, of their leaves for 2-3 months. The leaves of more evergreen species were more heavily sclerotized, and sclerotized leaves accumulated fewer mines in the summer. Leaves of more deciduous species also accumulated fewer mines in the summer, and this was consistent with the idea that trees reduce overwintering herbivores by shedding leaves. Trees with a later leaf set and slower leaf maturation accumulated fewer herbivores. We propose that both leaf drop and early leaf phenology strongly affect herbivore abundance and select for differences in plant defense. Leaf drop may allow trees to dispose of their herbivores so that the herbivores must recolonize in spring, but trees with the longest leaf retention also have the greatest direct defenses against herbivores.

  2. Oak Ridge Reservation environmental report for 1990

    SciTech Connect

    Wilson, A.R.

    1991-09-01

    The purpose of this report is to provide information to the public about the impact of the US Department of Energy's (DOE's) facilities located on the Oak Ridge Reservation (ORR) on the public and the environment. It describes the environmental surveillance and monitoring activities conducted at and around the DOE facilities operated by Martin Marietta Energy Systems, Inc. Preparation and publication of this report is in accordance with DOE Order 5400.1. The order specifies a publication deadline of June of the following year for each calendar year of data. The primary objective of this report is to summarize all information collected for the previous calendar year regarding effluent monitoring, environmental surveillance, and estimates of radiation and chemical dose to the surrounding population. When multiple years of information are available for a program, trends are also evaluated. The first seven sections of Volume 1 of this report address this objective. The last three sections of Volume 1 provide information on solid waste management, special environmental studies, and quality assurance programs.

  3. Crush Testing at Oak Ridge National Laboratory

    SciTech Connect

    Feldman, Matthew R

    2011-01-01

    The dynamic crush test is required in the certification testing of some small Type B transportation packages. International Atomic Energy Agency regulations state that the test article must be 'subjected to a dynamic crush test by positioning the specimen on the target so as to suffer maximum damage.' Oak Ridge National Laboratory (ORNL) Transportation Technologies Group performs testing of Type B transportation packages, including the crush test, at the National Transportation Research Center in Knoxville, Tennessee (United States). This paper documents ORNL's experiences performing crush tests on several different Type B packages. ORNL has crush tested five different drum-type package designs, continuing its 60 year history of RAM package testing. A total of 26 crush tests have been performed in a wide variety of package orientations and crush plate CG alignments. In all cases, the deformation of the outer drum created by the crush test was significantly greater than the deformation damage caused by the 9 m drop test. The crush test is a highly effective means for testing structural soundness of smaller nondense Type B shipping package designs. Further regulatory guidance could alleviate the need to perform the crush test in a wide range of orientations and crush plate CG alignments.

  4. Leaf drop affects herbivory in oaks.

    PubMed

    Pearse, Ian S; Karban, Richard

    2013-11-01

    Leaf phenology is important to herbivores, but the timing and extent of leaf drop has not played an important role in our understanding of herbivore interactions with deciduous plants. Using phylogenetic general least squares regression, we compared the phenology of leaves of 55 oak species in a common garden with the abundance of leaf miners on those trees. Mine abundance was highest on trees with an intermediate leaf retention index, i.e. trees that lost most, but not all, of their leaves for 2-3 months. The leaves of more evergreen species were more heavily sclerotized, and sclerotized leaves accumulated fewer mines in the summer. Leaves of more deciduous species also accumulated fewer mines in the summer, and this was consistent with the idea that trees reduce overwintering herbivores by shedding leaves. Trees with a later leaf set and slower leaf maturation accumulated fewer herbivores. We propose that both leaf drop and early leaf phenology strongly affect herbivore abundance and select for differences in plant defense. Leaf drop may allow trees to dispose of their herbivores so that the herbivores must recolonize in spring, but trees with the longest leaf retention also have the greatest direct defenses against herbivores. PMID:23774946

  5. INDEPENDENT VERIFICATION OF THE CENTRAL CAMPUS AND SOUTHEAST LABORATORY COMPLEX BUILDING SLABS AT OAK RIDGE NATIONAL LABORATORY, OAK RIDGE, TENNESSEE

    SciTech Connect

    Weaver, Phyllis C.

    2012-07-24

    Oak Ridge Associated Universities/Oak Ridge Institute for Science and Education (ORAU/ORISE) has completed the independent verification survey of the Central Campus and Southeast Lab Complex Building Slabs. The results of this effort are provided. The objective of this verification survey was to provide independent review and field assessment of remediation actions conducted by SEC, and to independently assess whether the final radiological condition of the slabs met the release guidelines.

  6. Woodland salamander responses to a shelterwood harvest-prescribed burn silvicultural treatment within Appalachian mixed-oak forests

    USGS Publications Warehouse

    Ford, W. Mark; Mahoney, Kathleen R.; Russell, Kevin R.; Rodrigue, Jane L.; Riddle, Jason D.; Schuler, Thomas M.; Adams, Mary Beth

    2015-01-01

    Forest management practices that mimic natural canopy disturbances, including prescribed fire and timber harvests, may reduce competition and facilitate establishment of favorable vegetative species within various ecosystems. Fire suppression in the central Appalachian region for almost a century has contributed to a transition from oak-dominated to more mesophytic, fire-intolerant forest communities. Prescribed fire coupled with timber removal is currently implemented to aid in oak regeneration and establishment but responses of woodland salamanders to this complex silvicultural system is poorly documented. The purpose of our research was to determine how woodland salamanders respond to shelterwood harvests following successive burns in a central Appalachian mixed-oak forest. Woodland salamanders were surveyed using coverboard arrays in May, July, and August–September 2011 and 2012. Surveys were conducted within fenced shelterwood-burn (prescribed fires, shelterwood harvest, and fencing to prevent white-tailed deer [Odocoileus virginianus] herbivory), shelterwood-burn (prescribed fires and shelterwood harvest), and control plots. Relative abundance was modeled in relation to habitat variables measured within treatments for mountain dusky salamanders (Desmognathus ochrophaeus), slimy salamanders (Plethodon glutinosus), and eastern red-backed salamanders (Plethodon cinereus). Mountain dusky salamander relative abundance was positively associated with canopy cover and there were significantly more individuals within controls than either shelterwood-burn or fenced shelterwood-burn treatments. Conversely, habitat variables associated with slimy salamanders and eastern red-backed salamanders did not differ among treatments. Salamander age-class structure within controls did not differ from shelterwood-burn or fenced shelterwood-burn treatments for any species. Overall, the woodland salamander assemblage remained relatively intact throughout the shelterwoodburn

  7. Effects of red-backed salamanders on ecosystem functions.

    PubMed

    Hocking, Daniel J; Babbitt, Kimberly J

    2014-01-01

    Ecosystems provide a vast array of services for human societies, but understanding how various organisms contribute to the functions that maintain these services remains an important ecological challenge. Predators can affect ecosystem functions through a combination of top-down trophic cascades and bottom-up effects on nutrient dynamics. As the most abundant vertebrate predator in many eastern US forests, woodland salamanders (Plethodon spp.) likely affect ecosystems functions. We examined the effects of red-backed salamanders (Plethodon cinereus) on a variety of forest ecosystem functions using a combined approach of large-scale salamander removals (314-m(2) plots) and small-scale enclosures (2 m(2)) where we explicitly manipulated salamander density (0, 0.5, 1, 2, 4 m(-2)). In these experiments, we measured the rates of litter and wood decomposition, potential nitrogen mineralization and nitrification rates, acorn germination, and foliar insect damage on red oak seedlings. Across both experimental venues, we found no significant effect of red-backed salamanders on any of the ecosystem functions. We also found no effect of salamanders on intraguild predator abundance (carabid beetles, centipedes, spiders). Our study adds to the already conflicting evidence on effects of red-backed salamander and other amphibians on terrestrial ecosystem functions. It appears likely that the impact of terrestrial amphibians on ecosystem functions is context dependent. Future research would benefit from explicitly examining terrestrial amphibian effects on ecosystem functions under a variety of environmental conditions and in different forest types.

  8. Effects of Red-Backed Salamanders on Ecosystem Functions

    PubMed Central

    Hocking, Daniel J.; Babbitt, Kimberly J.

    2014-01-01

    Ecosystems provide a vast array of services for human societies, but understanding how various organisms contribute to the functions that maintain these services remains an important ecological challenge. Predators can affect ecosystem functions through a combination of top-down trophic cascades and bottom-up effects on nutrient dynamics. As the most abundant vertebrate predator in many eastern US forests, woodland salamanders (Plethodon spp.) likely affect ecosystems functions. We examined the effects of red-backed salamanders (Plethodon cinereus) on a variety of forest ecosystem functions using a combined approach of large-scale salamander removals (314-m2 plots) and small-scale enclosures (2 m2) where we explicitly manipulated salamander density (0, 0.5, 1, 2, 4 m−2). In these experiments, we measured the rates of litter and wood decomposition, potential nitrogen mineralization and nitrification rates, acorn germination, and foliar insect damage on red oak seedlings. Across both experimental venues, we found no significant effect of red-backed salamanders on any of the ecosystem functions. We also found no effect of salamanders on intraguild predator abundance (carabid beetles, centipedes, spiders). Our study adds to the already conflicting evidence on effects of red-backed salamander and other amphibians on terrestrial ecosystem functions. It appears likely that the impact of terrestrial amphibians on ecosystem functions is context dependent. Future research would benefit from explicitly examining terrestrial amphibian effects on ecosystem functions under a variety of environmental conditions and in different forest types. PMID:24466269

  9. Effects of red-backed salamanders on ecosystem functions.

    PubMed

    Hocking, Daniel J; Babbitt, Kimberly J

    2014-01-01

    Ecosystems provide a vast array of services for human societies, but understanding how various organisms contribute to the functions that maintain these services remains an important ecological challenge. Predators can affect ecosystem functions through a combination of top-down trophic cascades and bottom-up effects on nutrient dynamics. As the most abundant vertebrate predator in many eastern US forests, woodland salamanders (Plethodon spp.) likely affect ecosystems functions. We examined the effects of red-backed salamanders (Plethodon cinereus) on a variety of forest ecosystem functions using a combined approach of large-scale salamander removals (314-m(2) plots) and small-scale enclosures (2 m(2)) where we explicitly manipulated salamander density (0, 0.5, 1, 2, 4 m(-2)). In these experiments, we measured the rates of litter and wood decomposition, potential nitrogen mineralization and nitrification rates, acorn germination, and foliar insect damage on red oak seedlings. Across both experimental venues, we found no significant effect of red-backed salamanders on any of the ecosystem functions. We also found no effect of salamanders on intraguild predator abundance (carabid beetles, centipedes, spiders). Our study adds to the already conflicting evidence on effects of red-backed salamander and other amphibians on terrestrial ecosystem functions. It appears likely that the impact of terrestrial amphibians on ecosystem functions is context dependent. Future research would benefit from explicitly examining terrestrial amphibian effects on ecosystem functions under a variety of environmental conditions and in different forest types. PMID:24466269

  10. Microgravity survey of the Oak Ridge K-25 Site, Oak Ridge, Tennessee

    SciTech Connect

    Kaufmann, R.D.

    1996-05-01

    Karst features are known to exist within the carbonate bedrock of the Oak Ridge K-25 Site and may play an important role in groundwater flow and contaminant migration. This report discusses the results of a microgravity survey of the Oak Ridge K-25 Site. The main objective of the survey is to identify areas containing bedrock cavities. Secondary objectives included correlating the observed gravity to the geology and to variations in overburden thickness. The analysis includes 11 profile lines that are oriented perpendicular to the geologic strike and major structures throughout the K-25 Site. The profile lines are modeled in an effort to relate gravity anomalies to karst features such as concentrations of mud-filled cavities. Regolith thickness and density data provided by boreholes constrain the models. Areally distributed points are added to the profile lines to produce a gravity contour map of the site. In addition, data from the K-901 area are combined with data from previous surveys to produce a high resolution map of that site. The K-25 Site is located in an area of folded and faulted sedimentary rocks within the Appalachian Valley and Ridge physiographic province. Paleozoic age rocks of the Rome Formation, Knox Group, and Chickamauga Supergroup underlie the K-25 Site and contain structures that include the Whiteoak Mountain Fault, the K-25 Fault, a syncline, and an anticline. The mapped locations of the rock units and complex structures are currently derived from outcrop and well log analysis.

  11. Characterization plan for the Oak Ridge National Laboratory Area-Wide Groundwater Program, Oak Ridge, Tennessee

    SciTech Connect

    Not Available

    1994-08-01

    This characterization plan has been developed as part of the U.S. Department of Energy`s (DOE`s) investigation of the Groundwater Operable Unit (GWOU) at Oak Ridge National Laboratory (ORNL) located near Oak Ridge, Tennessee. The first iteration of the characterization plan is intended to serve as a strategy document to guide subsequent GWOU remedial investigations. The plan provides a rationale and organization for groundwater data acquisition, monitoring, and remedial actions to be performed during implementation of environmental restoration activities associated with the ORNL GWOU. It is important to note that the characterization plan for the ORNL GWOU is not a prototypical work plan. As such, remedial investigations will be conducted using annual work plans to manage the work activities, and task reports will be used to document the results of the investigations. Sampling and analysis results will be compiled and reported annually with a review of data relative to risk (screening level risk assessment review) for groundwater. This characterization plan outlines the overall strategy for the remedial investigations and defines tasks that are to be conducted during the initial phase of investigation. This plan is presented with the understanding that more specific addenda to the plan will follow.

  12. Genome of the red alga Porphyridium purpureum.

    PubMed

    Bhattacharya, Debashish; Price, Dana C; Chan, Cheong Xin; Qiu, Huan; Rose, Nicholas; Ball, Steven; Weber, Andreas P M; Arias, Maria Cecilia; Henrissat, Bernard; Coutinho, Pedro M; Krishnan, Anagha; Zäuner, Simone; Morath, Shannon; Hilliou, Frédérique; Egizi, Andrea; Perrineau, Marie-Mathilde; Yoon, Hwan Su

    2013-01-01

    The limited knowledge we have about red algal genomes comes from the highly specialized extremophiles, Cyanidiophyceae. Here, we describe the first genome sequence from a mesophilic, unicellular red alga, Porphyridium purpureum. The 8,355 predicted genes in P. purpureum, hundreds of which are likely to be implicated in a history of horizontal gene transfer, reside in a genome of 19.7 Mbp with 235 spliceosomal introns. Analysis of light-harvesting complex proteins reveals a nuclear-encoded phycobiliprotein in the alga. We uncover a complex set of carbohydrate-active enzymes, identify the genes required for the methylerythritol phosphate pathway of isoprenoid biosynthesis, and find evidence of sexual reproduction. Analysis of the compact, function-rich genome of P. purpureum suggests that ancestral lineages of red algae acted as mediators of horizontal gene transfer between prokaryotes and photosynthetic eukaryotes, thereby significantly enriching genomes across the tree of photosynthetic life.

  13. Genome of the red alga Porphyridium purpureum

    PubMed Central

    Bhattacharya, Debashish; Price, Dana C.; Xin Chan, Cheong; Qiu, Huan; Rose, Nicholas; Ball, Steven; Weber, Andreas P. M.; Cecilia Arias, Maria; Henrissat, Bernard; Coutinho, Pedro M.; Krishnan, Anagha; Zäuner, Simone; Morath, Shannon; Hilliou, Frédérique; Egizi, Andrea; Perrineau, Marie-Mathilde; Yoon, Hwan Su

    2013-01-01

    The limited knowledge we have about red algal genomes comes from the highly specialized extremophiles, Cyanidiophyceae. Here, we describe the first genome sequence from a mesophilic, unicellular red alga, Porphyridium purpureum. The 8,355 predicted genes in P. purpureum, hundreds of which are likely to be implicated in a history of horizontal gene transfer, reside in a genome of 19.7 Mbp with 235 spliceosomal introns. Analysis of light-harvesting complex proteins reveals a nuclear-encoded phycobiliprotein in the alga. We uncover a complex set of carbohydrate-active enzymes, identify the genes required for the methylerythritol phosphate pathway of isoprenoid biosynthesis, and find evidence of sexual reproduction. Analysis of the compact, function-rich genome of P. purpureum suggests that ancestral lineages of red algae acted as mediators of horizontal gene transfer between prokaryotes and photosynthetic eukaryotes, thereby significantly enriching genomes across the tree of photosynthetic life. PMID:23770768

  14. Red cell enzymes.

    PubMed

    Paniker, N V

    1975-03-01

    As compared to other cells of the body, the mammalian red cell has one of the simplest structural organizations. As a result, this cell has been extensively used in studies involving the structure, function, and integrity of cell membranes as well as cytoplasmic events. Additionally, the metabolic activities of the red blood cell are also relatively simple. During the past quarter century or so, an ocean of knowledge has been gathered on various aspects of red cell metabolism and function. The fields of enzymes, hemoglobin, membrane, and metabolic products comprise the major portion of this knowledge. These advances have made valuable contributions to biochemistry and medicine. Despite these favorable aspects of this simple, anucleated cell, it must be conceded that our knowledge about the red cell is far from complete. We are still in the dark concerning the mechanism involved in several aspects of its membrane, hemoglobin, enzymes, and a large number of other constituents. For example, a large number of enzymes with known catalytic activity but with unknown function have eluded investigators despite active pursuit. This review will be a consolidation of our present knowledge of human red cell enzymes, with particular reference to their usefulness in the diagnosis and therapy of disease. Owing to the multitude of publications by prominent investigators on each of the approximately 50 enzymes discussed in this review, it was impossible to cite a majority of them.

  15. Stability and bioavailability of mercury sulfide in Oak Ridge Soils

    SciTech Connect

    Han, F.; Shiyab, S.; Su, Y.; Monts, D.L.; Waggoner, C.A.; Matta, F.B.

    2007-07-01

    During the 1950's and 1960's, a large amount of elemental mercury escaped confinement and is still present in the buildings and grounds of the U.S. Department of Energy's Y-12 National Security Facility and in the Y-12 Watershed in Oak Ridge, Tennessee, USA. Because of the adverse effects of elemental mercury and mercury compounds upon human health, the Oak Ridge Site is engaged in an on-going effort to monitor and remediate the area. In order to more cost effectively implement those extensive remediation efforts, it is necessary now to obtain an improved understanding of the role that mercury and mercury compounds play in the Oak Ridge ecosystem. Specifically, the long-term bioavailability, stability, and mobility of mercury species in contaminated terrestrial and aquatic environments of the Oak Ridge ecosystem under a range of biogeochemical conditions are not well understood. Mercury can be expected to be present in various forms. These species can be transformed from one form into another thus bioavailability, toxicity, and mobility can change as a function of the biogeochemical conditions. The kinetics of these transformations is currently unknown. We have conducted pilot scale experiments to study the bioavailability of mercury sulfide (HgS) in Oak Ridge soils. The effects of plants and incubation time on chemical stability and bioavailability of HgS under simulated conditions of the Oak Ridge ecosystem have been examined, as has the dynamics of the dissolution of HgS by various extractants. The results show that HgS in contaminated Oak Ridge soils was still to some extent bioavailable to plants. (authors)

  16. Oak Ridge National Laboratory Core Competencies

    SciTech Connect

    Roberto, J.B.; Anderson, T.D.; Berven, B.A.; Hildebrand, S.G.; Hartman, F.C.; Honea, R.B.; Jones, J.E. Jr.; Moon, R.M. Jr.; Saltmarsh, M.J.; Shelton, R.B.

    1994-12-01

    A core competency is a distinguishing integration of capabilities which enables an organization to deliver mission results. Core competencies represent the collective learning of an organization and provide the capacity to perform present and future missions. Core competencies are distinguishing characteristics which offer comparative advantage and are difficult to reproduce. They exhibit customer focus, mission relevance, and vertical integration from research through applications. They are demonstrable by metrics such as level of investment, uniqueness of facilities and expertise, and national impact. The Oak Ridge National Laboratory (ORNL) has identified four core competencies which satisfy the above criteria. Each core competency represents an annual investment of at least $100M and is characterized by an integration of Laboratory technical foundations in physical, chemical, and materials sciences; biological, environmental, and social sciences; engineering sciences; and computational sciences and informatics. The ability to integrate broad technical foundations to develop and sustain core competencies in support of national R&D goals is a distinguishing strength of the national laboratories. The ORNL core competencies are: 9 Energy Production and End-Use Technologies o Biological and Environmental Sciences and Technology o Advanced Materials Synthesis, Processing, and Characterization & Neutron-Based Science and Technology. The distinguishing characteristics of each ORNL core competency are described. In addition, written material is provided for two emerging competencies: Manufacturing Technologies and Computational Science and Advanced Computing. Distinguishing institutional competencies in the Development and Operation of National Research Facilities, R&D Integration and Partnerships, Technology Transfer, and Science Education are also described. Finally, financial data for the ORNL core competencies are summarized in the appendices.

  17. Sanitation options for managing oak wood infested with the invasive goldspotted oak borer (Coleoptera: Buprestidae) in southern California.

    PubMed

    Jones, Michael I; Coleman, Tom W; Graves, Andrew D; Flint, Mary Louise; Seybold, Steven J

    2013-02-01

    Movement of invasive wood-boring insects in wood products presents a threat to forest health and a management challenge for public and private land managers. The goldspotted oak borer, Agrilus auroguttatus Schaeffer (Coleoptera: Buprestidae), is a new pest in San Diego and Riverside Cos., CA, believed to have been introduced on firewood. This beetle has caused elevated levels of oak mortality since 2002. From 2009-2011, we tested several sanitation methods, applicable to large and small land parcels, to reduce or prevent goldspotted oak borer emergence from infested oak wood. In most experiments, emergence of goldspotted oak borer adults from the positive controls demonstrated that the beetle could complete development in firewood-sized pieces of cut oak wood. In 2009, adult emergence from sun-exposed oak wood began and peaked 2- to 4-wks earlier at a low elevation site than at a high elevation site (late May to late June). However, there were no significant effects of elevation or host species on the emergence response of goldspotted oak borer by solarization treatment in this study. Solarization of infested wood with thick (6 mil) and thin (1 mil) plastic tarpaulins (tarps) did not significantly reduce emergence of adults despite recordings of greater mean and maximum daily temperatures in both tarped treatments and greater relative humidity in the thick-tarped treatment (all compared with nontarped controls). Grinding wood with a 3"-minus screen (< or = 7.6 cm) significantly reduced goldspotted oak borer emergence compared with control treatments, and this was the best method for reducing adult emergence among those tested. In a separate grinding study, no adults emerged when wood was ground to 9"-minus (22.9 cm), 2"-minus (5.1 cm), or 1"-minus (2.5 cm) screen sizes, but a low level of adult emergence from the positive controls limited any inferences from this experiment. Debarking cut wood pieces eliminated goldspotted oak borer emergence from the wood fraction

  18. As Long as it is Not My Land: Landowners and Oak Woodland Conservation in Spain and California

    NASA Astrophysics Data System (ADS)

    Huntsinger, L.; Oviedo, J. L.; Plieninger, T.

    2009-04-01

    In Spain and California, landowners have a crucial role to play in the conservation of oak woodlands. The value of environmental services from private oak woodlands used for extensive agriculture has drawn the attention of policymakers and conservationists, and policy strategies for maintenance of traditional extensive agriculture are emergent in both places. These strategies require landowner participation. Surveys of landowners in each place reveal similarities in management practices, goals, attitudes, and demographics, as well as some interesting points of divergence. Despite very different institutional and political contexts, landowner attitudes show some striking similarities. Both favor a degree of government protection of natural resources, but would prefer that this would not include regulation of activities on their own lands. With a relatively stable woodland ecologically, and a high rate of urban out-migration into woodland areas, the more visible initiatives in California today focus on landowner education, and tax relief for temporary or permanent restrictions on land conversion. Non-governmental organizations have taken an increasingly visible role in the brokering of purchased or donated land title restrictions for conservation. These programs have resulted in an apparent decline in oak harvest and some limitations on development, but have not often directly influenced regeneration or management on private lands. In contrast, with more stable patterns of population distribution and less stable woodland ecological dynamics, Spanish incentive programs approach regeneration and management issues more directly, with subsidies for oak planting and maintenance, and price advantages for the products of traditional agriculture. The results of a twenty-year longitudinal study in California show a shift towards an increasing focus on amenities by California oak woodland landowners, whether they are ranch owners with hundreds of hectares of woodland, or

  19. The influence of red on perceptions of relative dominance and threat in a competitive context.

    PubMed

    Feltman, Roger; Elliot, Andrew J

    2011-04-01

    Recent research has revealed that a person or team wearing red is more likely to win a physical contest than a person or team wearing another color. In the present research, we examined whether red influences perceptions of relative dominance and threat in an imagined same-sex competitive context, and did so attending to the distinction between wearing red oneself and viewing red on an opponent. Results revealed a bidirectional effect: wearing red enhanced perceptions of one's relative dominance and threat, and viewing an opponent in red enhanced perceptions of the opponent's relative dominance and threat. These effects were observed across sex, and participants seemed unaware of the influence of red on their responses. Our findings lead to practical suggestions regarding the use of colored attire in sport contexts, and add to an emerging, provocative literature indicating that red has a subtle but important influence on psychological functioning.

  20. White Oak Creek Watershed: Melton Valley Area Remedial Investigation Report, Oak Ridge National Laboratory, Oak Ridge, Tennessee: Volume 3 Appendix C

    SciTech Connect

    1996-11-01

    This report provides details on the baseline ecological risk assessment conducted in support of the Remedial Investigation (RI) Report for the Melton Valley areas of the White Oak Creek watershed (WOCW). The RI presents an analysis meant to enable the US Department of Energy (DOE) to pursue a series of remedial actions resulting in site cleanup and stabilization. The ecological risk assessment builds off of the WOCW screening ecological risk assessment. All information available for contaminated sites under the jurisdiction of the US Department of Energy`s Comprehensive Environmental Response, Compensation, and Liability Act Federal Facilities Agreement within the White Oak Creek (WOC) RI area has been used to identify areas of potential concern with respect to the presence of contamination posing a potential risk to ecological receptors within the Melton Valley area of the White Oak Creek watershed. The risk assessment report evaluates the potential risks to receptors within each subbasin of the watershed as well as at a watershed-wide scale. The WOC system has been exposed to contaminant releases from Oak Ridge National Laboratory and associated operations since 1943 and continues to receive contaminants from adjacent waste area groupings.

  1. Effects of losing keystone oak species on soil microbial community composition in temperate forests in the USA

    NASA Astrophysics Data System (ADS)

    Djukic, Ika; McGuire, Krista; Schuster, Wiliam; Griffin, Kevin

    2013-04-01

    Plant communities are closely associated with distinct soil microbial communities by controlling available soil carbon, temperature and water content. In the Eastern North America forests, genus Quercus (Oak) represents one of the foundation tree taxa. However, the future of oak forests is uncertain as forests are impacted by events such as insect herbivory, pathogen introduction and human disturbance; hence, the feedback to nutrients cycling will in part be dependent on changes in the associated microbial communities which in turn may have dramatically impact on the ecosystem services. The main objective of this study was to mimic pathogen-induced cascade mortality of the key taxa and subsequently to evaluate its specific impact on the soil microbial community composition. To this end, a tree-girdling experiment was performed (summer 2008) by excluding oak trees (50% (O50) and all (O)) and non-oak trees (N), respectively. Already one year after the tree-girdling, all soil chemical properties have been affected by the treatment. Soil pH increased from 0.2 to 0.7 units and was coupled with the increase of base cations probably as a result of disturbed absorption. However, a reversed trend was noted for the C:N ratios indicating a limited carbon supply for the soil microorganisms. Principal component analysis (PCA) of phospholipids fatty acids (PLFA) patterns revealed that the microbial communities were compositionally distinct among different treatments and their position along the slope, which in turn indicates an important indirect effect of soil chemistry on the microbial composition. The simulated decrease in carbon supply resulted in a considerable reduction of the relative fungal abundance in particular at the all oak girdled plots (by 6% at O50 and 27% at all oak girdled plots). The relative bacterial abundance remains unchanged; however, an increase in cyclopropy fatty acids, an indicator of the stress conditions, could be noted for all treated plots. The

  2. Land use practices and ectomycorrhizal fungal communities from oak woodlands dominated by Quercus suber L. considering drought scenarios.

    PubMed

    Azul, Anabela Marisa; Sousa, João Paulo; Agerer, Reinhard; Martín, María P; Freitas, Helena

    2010-02-01

    Oak woodlands in the Mediterranean basin have been traditionally converted into agro-silvo-pastoral systems and exemplified sustainable land use in Europe. In Portugal, in line with the trend of other European countries, profound changes in management options during the twentieth century have led to landscape simplification. Landscapes are dynamic and the knowledge of future management planning combining biological conservation and soil productivity is needed, especially under the actual scenarios of drought and increasing evidence of heavy oak mortality. We examined the ectomycorrhizal (ECM) fungal community associated with cork oak in managed oak woodlands (called montado) under different land use practices, during summer. ECM fungal richness and abundance were assessed in 15 stands established in nine montados located in the Alentejo region (southern Portugal), using morphotyping and ITS rDNA analysis. Parameters related to the montados landscape characteristics, land use history over the last 25 years, climatic and edaphic conditions were taken into account. Fifty-five ECM fungal taxa corresponding to the most abundant fungal symbionts were distinguished on cork oak roots. Cenococcum geophilum and the families Russulaceae and Thelephoraceae explained 56% of the whole ECM fungal community; other groups were represented among the community: Cortinariaceae, Boletaceae, Amanita, Genea, Pisolithus, Scleroderma, and Tuber. There were pronounced differences in ECM fungal community structure among the 15 montados stands: C. geophilum was the only species common to all stands, tomentelloid and russuloid species were detected in 87-93% of the stands, Cortinariaceae was detected in 60% of the stands, and the other groups were more unequally distributed. Ordination analysis revealed that ECM fungal richness was positively correlated with the silvo-pastoral exploitation regime and low mortality of cork oak, while ECM fungal abundance was positively correlated with extensive

  3. Reviving red snapper.

    PubMed

    Estabrook, Barry

    2010-01-01

    Red snappers in the Gulf of Mexico once hovered on the brink of extinction, their population having dropped to 2 percent of what had historically swum in the Gulf. But thanks to a recently introduced plan that turns the conventional wisdom of fisheries management on its head, the picture has begun to change. Called Individual Fishing Quotas (IFQs), the new regulations, which give a guaranteed allotment of fish to each participant instead of applying industry-wide quotas, went into effect for Gulf of Mexico Red Snapper (Lutjanus campechanus) in early 2007. The results were immediate and so profound that the Gulf Fishery Management Council voted earlier this year to increase the annual limit on red snapper to nearly 7 million pounds from 5 million.

  4. Red-based cumulus.

    PubMed

    Gedzelman, Stanley David

    2015-02-01

    Observations and model simulations of cumulus clouds whose bases are tinted red when the Sun is well above the horizon are presented. Conditions for seeing red bases include (1) a red underlying surface (which may consist of dust clouds, as from haboobs) with high albedo, (2) small fractional cloud cover when the Sun is far enough below the zenith for direct sunlight to illuminate much of the surface directly below and around cloud base, (3) optically thick clouds so that the bases are dark, and (4) clouds with bases that are near enough to the observer to appear high in the sky so that the admixture of scattered light from the intervening atmosphere is minimized.

  5. Red cell membrane lipids in hemoglobinopathies.

    PubMed

    Kuypers, Frans A

    2008-11-01

    The complex mixture of lipids and proteins of the red blood cell membrane is well maintained during the life of the cell. Lipid analysis of the red cell reveals hundreds of phospholipid molecular species and cholesterol that differ with respect to their (polar) head group, and (apolar) side chains. These molecules move rapidly in the plane, as well as across the lipid bilayer. This dynamic movement is highly organized. In the plane of the bilayer, areas enriched in certain lipids accommodate protein structure and modulate function. While lipids move across the bilayer, the organization is highly asymmetric. Amino phospholipids are mainly found on the inside and choline containing phospholipids on the outside. Both the composition and organization of the red cell membrane is maintained throughout the life of the red cell by an intricate mechanism that involves enzymes, transporters and cytosolic factors. Key proteins that maintain red blood cell lipid organization have recently been identified. Alterations in these mechanisms, as the result of the globin mutations in sickle cell disease or thalassemia will lead to loss of membrane viability, apoptosis during erythropoiesis, early demise of the cell in the circulation, and when these cells are not removed appropriately their presence has pathologic consequences.

  6. Genetic Diversity Increases Insect Herbivory on Oak Saplings

    PubMed Central

    Castagneyrol, Bastien; Lagache, Lélia; Giffard, Brice; Kremer, Antoine; Jactel, Hervé

    2012-01-01

    A growing body of evidence from community genetics studies suggests that ecosystem functions supported by plant species richness can also be provided by genetic diversity within plant species. This is not yet true for the diversity-resistance relationship as it is still unclear whether damage by insect herbivores responds to genetic diversity in host plant populations. We developed a manipulative field experiment based on a synthetic community approach, with 15 mixtures of one to four oak (Quercus robur) half-sib families. We quantified genetic diversity at the plot level by genotyping all oak saplings and assessed overall damage caused by ectophagous and endophagous herbivores along a gradient of increasing genetic diversity. Damage due to ectophagous herbivores increased with the genetic diversity in oak sapling populations as a result of higher levels of damage in mixtures than in monocultures for all families (complementarity effect) rather than because of the presence of more susceptible oak genotypes in mixtures (selection effect). Assemblages of different oak genotypes would benefit polyphagous herbivores via improved host patch location, spill over among neighbouring saplings and diet mixing. By contrast, genetic diversity was a poor predictor of the abundance of endophagous herbivores, which increased with individual sapling apparency. Plant genetic diversity may not provide sufficient functional contrast to prevent tree sapling colonization by specialist herbivores while enhancing the foraging of generalist herbivores. Long term studies are nevertheless required to test whether the effect of genetic diversity on herbivory change with the ontogeny of trees and local adaptation of specialist herbivores. PMID:22937168

  7. Genetic diversity increases insect herbivory on oak saplings.

    PubMed

    Castagneyrol, Bastien; Lagache, Lélia; Giffard, Brice; Kremer, Antoine; Jactel, Hervé

    2012-01-01

    A growing body of evidence from community genetics studies suggests that ecosystem functions supported by plant species richness can also be provided by genetic diversity within plant species. This is not yet true for the diversity-resistance relationship as it is still unclear whether damage by insect herbivores responds to genetic diversity in host plant populations. We developed a manipulative field experiment based on a synthetic community approach, with 15 mixtures of one to four oak (Quercus robur) half-sib families. We quantified genetic diversity at the plot level by genotyping all oak saplings and assessed overall damage caused by ectophagous and endophagous herbivores along a gradient of increasing genetic diversity. Damage due to ectophagous herbivores increased with the genetic diversity in oak sapling populations as a result of higher levels of damage in mixtures than in monocultures for all families (complementarity effect) rather than because of the presence of more susceptible oak genotypes in mixtures (selection effect). Assemblages of different oak genotypes would benefit polyphagous herbivores via improved host patch location, spill over among neighbouring saplings and diet mixing. By contrast, genetic diversity was a poor predictor of the abundance of endophagous herbivores, which increased with individual sapling apparency. Plant genetic diversity may not provide sufficient functional contrast to prevent tree sapling colonization by specialist herbivores while enhancing the foraging of generalist herbivores. Long term studies are nevertheless required to test whether the effect of genetic diversity on herbivory change with the ontogeny of trees and local adaptation of specialist herbivores.

  8. Responses and acclimation of Chinese cork oak (Quercus variabilis Bl.) to metal stress: the inducible antimony tolerance in oak trees.

    PubMed

    Zhao, Xiulian; Zheng, Lingyu; Xia, Xinli; Yin, Weilun; Lei, Jingpin; Shi, Shengqing; Shi, Xiang; Li, Huiqing; Li, Qinghe; Wei, Yuan; Chang, Ermei; Jiang, Zeping; Liu, Jianfeng

    2015-08-01

    Antimony (Sb) pollution has become a pressing environmental problem in recent years. Trees have been proven to have great potential for the feasible phytomanagement; however, little is known about Sb retention and tolerance in trees. The Chinese cork oak (Quercus variabilis Bl.) is known to be capable of growth in soils containing high concentrations of Sb. This study explored in detail the retention and acclimation of Q. variabilis under moderate and high external Sb levels. Results revealed that Q. variabilis could tolerate and accumulate high Sb (1623.39 mg kg(-1) DW) in roots. Dynamics of Sb retention in leaves, stems, and roots of Q. variabilis were different. Leaf Sb remained at a certain level for several weeks, while in roots and stems, Sb concentrations continued to increase. Sb damaged tree's PSII reaction cores but elicited defense mechanism at the donor side of PSII. It affected the electron transport flow after QA (-) more strongly than the oxygen-evolving complex and light-harvesting pigment-protein complex II. Sb also decreased leaf chlorophyll concentrations and therefore inhibited plant growth. During acclimation to Sb toxicity, Sb concentrations in leaves, stems, and roots decreased, with photosynthetic activity and pigments recovering to normal levels by the end of the experiment. These findings suggest that Sb tolerance in Q. variabilis is inducible. Acclimation seems to be related to homeostasis of Sb in plants. Results of this study can provide useful information for trees breeding and selection of Sb phytomanagement strategies, exploiting the established ability of Q. variabilis to transport, delocalize in the leaves, and tolerate Sb pollutions.

  9. Resource Management plan for the Oak Ridge Reservation. Volume 28, Wetlands on the Oak Ridge Reservation

    SciTech Connect

    Cunningham, M.; Pounds, Larry

    1991-12-01

    A survey of wetlands on the Oak Ridge Reservation (ORR) was conducted in 1990. Wetlands occurring on ORR were identified using National Wetlands Inventory (NWI) maps and field surveys. More than 120 sites were visited and 90 wetlands were identified. Wetland types on ORR included emergent communities in shallow embayments on reservoirs, emergent and aquatic communities in ponds, forested wetland on low ground along major creeks, and wet meadows and marshes associated with streams and seeps. Vascular plant species occurring on sites visited were inventoried, and 57 species were added to the checklist of vascular plants on ORR. Three species listed as rare in Tennessee were discovered on ORR during the wetlands survey. The survey provided an intensive ground truth of the wetlands identified by NWI and offered an indication of wetlands that the NWI remote sensing techniques did not detect.

  10. Management of spent nuclear fuel on the Oak Ridge Reservation, Oak Ridge, Tennessee: Environmental assessment

    SciTech Connect

    1996-02-01

    On June 1, 1995, DOE issued a Record of Decision [60 Federal Register 28680] for the Department-wide management of spent nuclear fuel (SNF); regionalized storage of SNF by fuel type was selected as the preferred alternative. The proposed action evaluated in this environmental assessment is the management of SNF on the Oak Ridge Reservation (ORR) to implement this preferred alternative of regional storage. SNF would be retrieved from storage, transferred to a hot cell if segregation by fuel type and/or repackaging is required, loaded into casks, and shipped to off-site storage. The proposed action would also include construction and operation of a dry cask SNF storage facility on ORR, in case of inadequate SNF storage. Action is needed to enable DOE to continue operation of the High Flux Isotope Reactor, which generates SNF. This report addresses environmental impacts.

  11. Level 3 Baseline Risk Assessment for Building 3515 at Oak Ridge National Lab., Oak Ridge, TN

    SciTech Connect

    Wollert, D.A.; Cretella, F.M.; Golden, K.M.

    1995-08-01

    The baseline risk assessment for the Fission Product Pilot Plant (Building 3515) at the Oak Ridge National laboratory (ORNL) provides the Decontamination and Decommissioning (D&D) Program at ORNL and Building 3515 project managers with information concerning the results of the Level 3 baseline risk assessment performed for this building. The document was prepared under Work Breakdown Structure 1.4.12.6.2.01 (Activity Data Sheet 3701, Facilities D&D) and includes information on the potential long-term impacts to human health and the environment if no action is taken to remediate Building 3515. Information provided in this document forms the basis for the development of remedial alternatives and the no-action risk portion of the Engineering Evaluation/Cost Analysis report.

  12. Design demonstrations for category B tank systems at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Not Available

    1994-11-01

    This document presents design demonstrations conducted of liquid low-level waste (LLLW) storage tank systems located at the Oak Ridge National Laboratory (ORNL). Demonstration of the design of these tank systems has been stipulated by the Federal Facility Agreement (FFA) between the US Environmental Protection Agency (EPA)-Region IV; the Tennessee Department of Environment and Conservation (TDEC); and the DOE. The FFA establishes four categories of tanks. These are: Category A -- New or replacement tank systems with secondary containment; Category B -- Existing tank systems with secondary containment; Category C -- Existing tank systems without secondary containment; Category D -- Existing tank systems without secondary containment that are removed from service. This document provides a design demonstration of the secondary containment and ancillary equipment of 11 tank systems listed in the FFA as Category B. The design demonstration for each tank is presented.

  13. Identification of Cyanobacteriochromes Detecting Far-Red Light.

    PubMed

    Rockwell, Nathan C; Martin, Shelley S; Lagarias, J Clark

    2016-07-19

    The opacity of mammalian tissue to visible light and the strong attenuation of infrared light by water at ≥900 nm have contributed to growing interest in the development of far-red and near-infrared absorbing tools for visualizing and actuating responses within live cells. Here we report the discovery of cyanobacteriochromes (CBCRs) responsive to light in this far-red window. CBCRs are linear tetrapyrrole (bilin)-based light sensors distantly related to plant phytochrome sensors. Our studies reveal far-red (λmax = 725-755 nm)/orange (λmax = 590-600 nm) and far-red/red (λmax = 615-685 nm) photoswitches that are small (<200 amino acids) and can be genetically reconstituted in living cells. Phylogenetic analysis and characterization of additional CBCRs demonstrated that far-red/orange CBCRs evolved after a complex transition from green/red CBCRs known for regulating complementary chromatic acclimation. Incorporation of different bilin chromophores demonstrated that tuning mechanisms responsible for red-shifted chromophore absorption act at the A-, B-, and/or C-rings, whereas photoisomerization occurs at the D-ring. Two such proteins exhibited detectable fluorescence extending well into the near-infrared region. This work extends the spectral window of CBCRs to the edge of the infrared, raising the possibility of using CBCRs in synthetic biology applications in the far-red region of the spectrum.

  14. Soil moisture in sessile oak forest gaps

    NASA Astrophysics Data System (ADS)

    Zagyvainé Kiss, Katalin Anita; Vastag, Viktor; Gribovszki, Zoltán; Kalicz, Péter

    2015-04-01

    By social demands are being promoted the aspects of the natural forest management. In forestry the concept of continuous forest has been an accepted principle also in Hungary since the last decades. The first step from even-aged stand to continuous forest can be the forest regeneration based on gap cutting, so small openings are formed in a forest due to forestry interventions. This new stand structure modifies the hydrological conditions for the regrowth. Without canopy and due to the decreasing amounts of forest litter the interception is less significant so higher amount of precipitation reaching the soil. This research focuses on soil moisture patterns caused by gaps. The spatio-temporal variability of soil water content is measured in gaps and in surrounding sessile oak (Quercus petraea) forest stand. Soil moisture was determined with manual soil moisture meter which use Time-Domain Reflectometry (TDR) technology. The three different sizes gaps (G1: 10m, G2: 20m, G3: 30m) was opened next to Sopron on the Dalos Hill in Hungary. First, it was determined that there is difference in soil moisture between forest stand and gaps. Second, it was defined that how the gap size influences the soil moisture content. To explore the short term variability of soil moisture, two 24-hour (in growing season) and a 48-hour (in dormant season) field campaign were also performed in case of the medium-sized G2 gap along two/four transects. Subdaily changes of soil moisture were performed. The measured soil moisture pattern was compared with the radiation pattern. It was found that the non-illuminated areas were wetter and in the dormant season the subdaily changes cease. According to our measurements, in the gap there is more available water than under the forest stand due to the less evaporation and interception loss. Acknowledgements: The research was supported by TÁMOP-4.2.2.A-11/1/KONV-2012-0004 and AGRARKLIMA.2 VKSZ_12-1-2013-0034.

  15. Californium Electrodepositions at Oak Ridge National Laboratory

    SciTech Connect

    Boll, Rose Ann

    2015-01-01

    Electrodepositions of californium isotopes were successfully performed at Oak Ridge National Laboratory (ORNL) during the past year involving two different types of deposition solutions, ammonium acetate (NH4C2H3O2) and isobutanol ((CH3)2CHCH2OH). A californium product that was decay enriched in 251Cf was recovered for use in super-heavy element (SHE) research. This neutron-rich isotope, 251Cf, provides target material for SHE research for the potential discovery of heavier isotopes of Z=118. The californium material was recovered from aged 252Cf neutron sources in storage at ORNL. These sources have decayed for over 30 years, thus providing material with a very high 251Cf-to-252Cf ratio. After the source capsules were opened, the californium was purified and then electrodeposited using the isobutanol method onto thin titanium foils for use in an accelerator at the Joint Institute for Nuclear Research in Dubna, Russia. Another deposition method, ammonium acetate, was used to produce a deposition containing 1.7 0.1 Ci of 252Cf onto a stainless steel substrate. This was the largest single electrodeposition of 252Cf ever prepared. The 252Cf material was initially purified using traditional ion exchange media, such as AG50-AHIB and AG50-HCl, and further purified using a TEVA-NH4SCN system to remove any lanthanides, resulting in the recovery of 3.6 0.1 mg of purified 252Cf. The ammonium acetate deposition was run with a current of 1.0 amp, resulting in a 91.5% deposition yield. Purification and handling of the highly radioactive californium material created additional challenges in the production of these sources.

  16. Instrument development continues in Oak Ridge

    SciTech Connect

    Ekkebus, Allen E

    2012-01-01

    Peer review panels composed of 80 external scientists recently visited Oak Ridge National Laboratory (ORNL) to review almost 700 proposals for experiments on 23 instruments at the Spallation Neutron Source (SNS) and High Flux Isotope Reactor (HFIR). These were proposed for the time period from January-June 2012. About 40% of the proposals were approved for beam time and 20% were placed on an alternate list if time becomes available. The Hybrid Spectrometer HYSPEC at SNS began its commissioning in September 2011. HYSPEC is otpimized for studying low energy dynamics in single-crystal samples using a broad variety of sample environments, and is equipped with a polarization analysis capability. It is expected to be available for users on a limited basis in the second half of 2012. The detector tank of CORELLI has been installed on beamline 9 at SNS. Now that the tank is in place, banks of neutron detectors and boron carbide shielding will be installed around the interior. CORELLI is optimized to probe complex disorder in crystalline materials through diffuse scattering from single-crystal samples. It will begin commissioning in 2014. CORELLI is one of four instruments being developed under the SING II (SNS Instruments Next Generation II) project. The others are the Macromolecular Neutron Diffractometer (MANDI), the Vibrational Spectrometer (VISION, scheduled to begin commissioning in 2012), and the Time of Flight Ultra Small Angle Neutron Scattering Instrument (TOF-USANS). The single crystal neutron diffractometer IMAGINE, was deliverd to HFIR in October 2011. Preliminary testing has been carried out. IMAGINE will provide atomic resolution information on chemical, organic, metallo-organic and protein single crystals that will enable their chemical, physical and biological structure and function to be understood. This instrument will benefit scientists with interests in pharmaceuticals, minerals and other inorganic crystals, small molecules, molecular organo

  17. Geological mapping of the Oak Ridge K-25 Site, Oak Ridge, Tennessee

    SciTech Connect

    Lemiszki, P.J.

    1994-01-01

    The Oak Ridge K-25 Site (formerly known as the Oak Ridge Gaseous Diffusion Plant) is located in the southern Appalachian Valley and Ridge province of east Tennessee and overlies an area of folded and faulted Cambrian through Ordovician sedimentary rocks in the footwall of the Whiteoak Mountain fault. Environmental restoration plans for the area require that the geology of the site be well understood because various aspects of the groundwater system are directly influenced by stratigraphic and structural characteristics of the bedrock. This study involved mapping the bedrock geology of an 18-square mile area in and around the plant site. Field mapping focused on: (1) checking the accuracy of previously mapped stratigraphic and fault contacts, (2) dividing the bedrock into distinct stratigraphic units based on field criteria, (3) determining the geometry of map-scale folds and faults, and (4) documenting various aspects of the local fracture system. Besides accomplishing all of the above tasks, results from this study have led to a number of new hypotheses regarding various aspects of the site geology. First, faulting and folding within carbonates of the Chickamauga Supergroup in the plant area has repeated certain rock units, which requires that there be a thrust fault in the subsurface below them. This thrust fault may project to the surface with the Carters Limestone. Second, thrust slices of the Rome Formation that overlie the Chickamauga carbonates may be extremely thin and have a limited aerial extent. Third, part of the Knox Group on McKinney Ridge is folded into an anticline. Evaluating the above hypotheses will require information about the subsurface that can only be acquired through drilling and surface geophysical surveys. The geologic map produced from this study can be used to evaluate the location of coreholes that will more effectively intersect a combination of stratigraphic, structural, and hydrologic targets.

  18. Survey of protected vascular plants on the Oak Ridge Reservation, Oak Ridge, Tennessee

    SciTech Connect

    Awl, D.J.; Pounds, L.R.; Rosensteel, B.A.; King, A.L.; Hamlett, P.A.

    1996-06-01

    Vascular plant surveys were initiated during fiscal year 1992 by the environmentally sensitive areas program to determine the baseline condition of threatened and endangered (T&E) vascular plant species on the Oak Ridge Reservation (ORR). T&E species receive protection under federal and state regulations. In addition, the National Environmental Policy Act (NEPA) requires that federally-funded projects avoid or mitigate impacts to listed species. T&E plant species found on or near the U.S. Department of Energy`s (DOE) Oak Ridge Reservation (ORR) are identified. Twenty-eight species identified on the ORR are listed by the Tennessee Department of Environment and Conservation as either endangered, threatened, or of special concern. Four of these have been under review by the U.S. Fish and Wildlife Service for possible listing (listed in the formerly-used C2 candidate category). Additional species listed by the state occur near and may be present on the ORR. A range of habitats support the rare taxa on the ORR: river bluffs, sinkholes, calcareous barrens, wetlands, utility corridors, and forests. The list of T&E plant species and their locations on the ORR should be considered provisional because the entire ORR has not been surveyed, and state and federal status of all species continues to be updated. The purpose of this document is to present information on the listed T&E plant species currently known to occur on the ORR as well as listed species potentially occurring on the ORR based on geographic range and habitat availability. For the purpose of this report, {open_quotes}T&E species{close_quotes} include all federal- and state-listed species, including candidates for listing, and species of special concern. Consideration of T&E plant habitats is an important component of resource management and land-use planning; protection of rare species in their natural habitat is the best method of ensuring their long-term survival.

  19. 'Vintage' Red Raspberry

    Technology Transfer Automated Retrieval System (TEKTRAN)

    'Vintage' is a new primocane-fruiting red raspberry (Rubus idaeus L.) from the U.S. Dept. of Agriculture–Agricultural Research Service (USDA–ARS) breeding program in Corvallis, OR released in cooperation with the Oregon State Agricultural Experiment Station and the Washington State University Agricu...

  20. Clover, Red (Trifolium pretense)

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Genetic modification of plants by the insertion of transgenes can be a powerful experimental approach to answer basic questions about gene product function. This technology can also be used to make improved crop varieties for use in the field. To apply this powerful tool to red clover, an important ...

  1. Red mud product development

    SciTech Connect

    Kirkpatrick, D.B.

    1996-10-01

    Kaiser Alumina and Chemical Co. impounds red mud, the byproduct of alumina production, behind levees. Kaiser recognizes that this action cannot be maintained indefinitely. Therefore, a project is in progress to produce useful products from red mud that increase the profitability of the Gramercy facility. Before products could be developed, an obstacle had to be overcome. The annual rainfall in South Louisiana prevents evaporative drying of the mud lakes. Innovative methods were applied to dry the lake mud. Two products have been developed. A daily landfill cover and an absorbant, which are marketed under the Cajunite{trademark} banner. Both products are currently being tested by potential customers at their sites. Environmental concerns were addressed during development. Extensive TCLP results show no metal leachate problems. All pilot tests and plant trials received LADEQ approval. Products that are under development include levee core, road base, fertilizer fillers and synthetic soils. State and Federal agencies are interested in using red mud to remediate coastal erosion. Kaiser is also pursuing the recovery of metals from red mud.

  2. Red Cross Swimming Update.

    ERIC Educational Resources Information Center

    Vlasich, Cynthia

    1989-01-01

    Six new aquatic courses, developed by the Red Cross, are described. They are: Infant and Preschool Aquatics, Longfellow's Whale Tales (classroom water safety lessons for K-Six), Basic Water Safety, Emergency Water Safety, Lifeguard Training, and Safety Training for Swim Coaches. (IAH)

  3. Red sea drillings.

    PubMed

    Ross, D A; Whitmarsh, R B; Ali, S A; Boudreaux, J E; Coleman, R; Fleisher, R L; Girdler, R; Manheim, F; Matter, A; Nigrini, C; Stoffers, P; Supko, P R

    1973-01-26

    Recent drilling in the Red Sea has shown that much of the basin is underlain by evaporites of a similar age to that of evaporites found in the Mediterranean Sea. These evaporites and their structural positions indicate that other brine areas are present-and, indeed, several others have been discovered. PMID:17843766

  4. Red sea drillings.

    PubMed

    Ross, D A; Whitmarsh, R B; Ali, S A; Boudreaux, J E; Coleman, R; Fleisher, R L; Girdler, R; Manheim, F; Matter, A; Nigrini, C; Stoffers, P; Supko, P R

    1973-01-26

    Recent drilling in the Red Sea has shown that much of the basin is underlain by evaporites of a similar age to that of evaporites found in the Mediterranean Sea. These evaporites and their structural positions indicate that other brine areas are present-and, indeed, several others have been discovered.

  5. Cross-Reactivity between Oak and Birch Pollens in Korean Tree Pollinosis

    PubMed Central

    Son, Mina; Park, Jin Hee; Park, Hye Jung; Hong, Chein-Soo

    2016-01-01

    Oak and birch trees belong to Fagales order. Specific IgE to pollen allergens of both trees are frequently found in Korea pollinosis patients. Oak trees which comprise 40% of forest area are common in Korea. However, birch trees are sparse. We compared the allergenicity of pollen extracts of white oak, sawtooth and Mongolian oaks which are prevalent species in Korea, with the pollen extract of birch. The cross-reactivity of four pollen extracts was examined with pooled sera of 12 patients by ELISA, immunoblotting and CAP inhibitions. A protein of 17 kDa, putatively homologous to a major birch allergen Bet v 1, displayed strong IgE reactivity from white oak and sawtooth oak pollen extract but not from Mongolian oak pollen. Notably, a 23-kDa protein from sawtooth and white oaks showed strong IgE reactivity and inhibited by Bet v 1. IgE binding to white oak was inhibited a maximum of 94.6% by white oak, 93.4% by sawtooth oak, 83.2% by Mongolian oak, and 68.8% by birch. Furthermore, sawtooth oak, white oak, and Mongolian oak extracts were able to inhibit up to 78.5%, 76.6% and 67.3% of IgE binding to birch extract, while birch extract itself inhibited up to 94.3%. Specific IgE to Bet v 1 was inhibited a maximum of 79.1% by sawtooth oak, 77.4% by white oak, and 72.7% by Mongolian oak, while 81.5% inhibition was shown by birch. Bet v 1 was able to partially inhibit its homologous molecules from sawtooth oak and white oak in immunoblotting. Birch pollen extract was found to be cross-reactive primarily with Bet v 1-homologous allergen from oak pollens in Korea pollinosis patients. Considering the sparseness of birch tree in Korea, oak, especially sawtooth oak may be the main cause of tree pollinosis in Korea, rather than birch. PMID:27478329

  6. CO2 study shows effects on scrub oak environment

    NASA Technical Reports Server (NTRS)

    2000-01-01

    CO2 study site manager and plant physiologist Graham Hymus (left) examines scrub oak foliage while project engineer David Johnson (right) looks on. The life sciences study is showing that rising levels of carbon dioxide in our atmosphere, caused by the burning of fossil fuels, could spur plant growth globally. The site of KSC's study is a natural scrub oak area near the Vehicle Assembly Building. Twelve-foot areas of scrub oak have been enclosed in 16 open-top test chambers into which CO2 has been blown. Five scientists from NASA and the Smithsonian Environmental Research Center in Edgewater, Md., work at the site to monitor experiments and keep the site running. Scientists hope to continue the study another five to 10 years. More information on this study can be found in Release No. 57- 00.

  7. The Oak Ridge Reservation Annual Site Environmental Report, 2007

    SciTech Connect

    Hughes, Joan; Thompson, Sharon; Page, David

    2008-09-30

    The Oak Ridge Reservation (ORR) consists of three major government-owned, contractor-operated facilities: the Y-12 National Security Complex, Oak Ridge National Laboratory, and East Tennessee Technology Park. The ORR was established in the early 1940s as part of the Manhattan Project, a secret undertaking that produced materials for the first atomic bombs. The reservation’s role has evolved over the years, and it continues to adapt to meet the changing defense, energy, and research needs of the United States. Both the work carried out for the war effort and subsequent research, development, and production activities have involved, and continue to involve, the use of radiological and hazardous materials. The Oak Ridge Reservation Annual Site Environmental Report and supporting data are available at Http://www.ornl.gov/sci/env_rpt or from the project director.

  8. Oak Ridge Dose Reconstruction annual report for calendar year 1997

    SciTech Connect

    1998-09-01

    Calendar year 1997 was the third full year of work on the Oak Ridge Dose Reconstruction. Activities are summarized on the following individual project tasks: Task 1 -- Investigation of radioiodine releases from X-10 radioactive lanthanum processing; Task 2 -- Investigation of mercury releases from Y-12 lithium enrichment; Task 3 -- Investigation of PCBs in the environment near Oak Ridge; Task 4 -- Investigation of radionuclides released from White Oak Creek to the Clinch River; Task 5 -- Systematic searching of records repositories; Task 6 -- Evaluation of the quality of uranium monitoring data and a screening evaluation of potential off-site health risks; and Task 7 -- Performance of screening for additional materials not evaluated in the feasibility study.

  9. Microevolution of European temperate oaks in response to environmental changes.

    PubMed

    Kremer, Antoine

    2016-01-01

    This review reconstructs microevolutionary processes that allowed long-lived species as temperate oaks (Quercus petraea and Q. robur) to cope with climate change since the last glacial maximum, by assembling insights from complementary synchronic and allochronic approaches. Paleobotanical and genetic investigations show that oaks migrated at larger velocities than expected, thanks to long-distance rare events and most likely human interferences. Hybridization was a key mechanism accelerating migration and enhancing species succession. Common garden experiments and genome wide association studies demonstrated that diversifying selection across large environmental gradients contributed to rapid local adaptation. Finally the review explores how lessons taken from past evolutionary scenarios may help to predict future responses of oaks to ongoing climate change. PMID:27263361

  10. Antioxidant Characterization of Oak Extracts Combining Spectrophotometric Assays and Chemometrics

    PubMed Central

    Popović, Boris M.; Štajner, Dubravka; Orlović, Saša; Galić, Zoran

    2013-01-01

    Antioxidant characteristics of leaves, twigs, and acorns from two Serbian oak species Quercus robur L. and Quercus petraea L. from Vojvodina province (northern Serbia) were investigated. 80% ethanol (in water) extracts were used for antiradical power (ARP) determinations against DPPH•, •NO, and O2•− radicals, ferric reducing antioxidant power (FRAP), total phenol, tannin, flavonoid, and proanthocyanidin contents. Permanganate reducing antioxidant capacity (PRAC) was determined using water extracts. Beside, mentioned parameters, soluble proteins, lipid peroxidation (LP), pigments and proline contents were also determined. The data of different procedures were compared and analyzed by multivariate techniques (correlation matrix calculation and principal component analysis (PCA)). PCA found that investigated organs of two different oak tree species possess similar antioxidant characteristics. The superior antioxidant characteristics showed oak leaves over twigs and acorns and seem to be promising source of antioxidants with possible use in industry and pharmacy. PMID:24453789

  11. Water quality monitoring report for the White Oak Creek Embayment

    SciTech Connect

    Ford, C.J. ); Wefer, M.T. )

    1993-01-01

    Water quality monitoring activities that focused on the detection of resuspended sediments in the Clinch River were conducted in conjunction with the White Oak Creek Embayment (WOCE) time-critical Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) removal action to construct a sediment-retention structure at the mouth of White Oak Creek (WOC). Samples were collected by use of a 24-h composite sampler and through real-time water grab sampling of sediment plumes generated by the construction activities. Sampling stations were established both at the WOC mouth, immediately adjacent to the construction site, and at K-1513, the Oak Ridge K-25 Site drinking water intake approximately 9.6 km downstream in the Clinch River. Results are described.

  12. Proposed sale of Parcel A2 of the Oak Ridge Reservation to the City of Oak Ridge, Tennessee

    SciTech Connect

    Not Available

    1992-09-01

    Parcel A encompasses two tracts of land owned by the US Department of Energy (DOE) on the Oak Ridge Reservation (ORR). The disposal of land was recommended by a General Services Administration 1981 land utilization survey. On June 21, 1988, 21.3 ha (52.7 acres) of land, Parcel A1, were transferred to the City of Oak Ridge. Parcel Al has since been transferred to the private sector for residential development. The City of Oak Ridge has requested acquisition of Parcel A2 for residential and industrial development. The purpose of the proposed action is to transfer Parcel A2 to the City of Oak Ridge for residential and industrial development. The need for the proposed action is for DOE to respond to the General Services Administration directive to dispose of Parcel A2 and to respond to the request by the City of Oak Ridge for its acquisition and development. The proposed sale of Parcel A2 would have no environmental impacts; however, the subsequent development by the City would affect the existing environment. It is the potential effects of the City's development of Parcel A2 that are addressed by this environmental assessment (EA). Areas of concern include land use, air quality, hydrology and water quality, wetlands and floodplains, ecological resources, and socioeconomic resources.

  13. Proposed sale of Parcel A2 of the Oak Ridge Reservation to the City of Oak Ridge, Tennessee. Environmental asssessment

    SciTech Connect

    Not Available

    1992-09-01

    Parcel A encompasses two tracts of land owned by the US Department of Energy (DOE) on the Oak Ridge Reservation (ORR). The disposal of land was recommended by a General Services Administration 1981 land utilization survey. On June 21, 1988, 21.3 ha (52.7 acres) of land, Parcel A1, were transferred to the City of Oak Ridge. Parcel Al has since been transferred to the private sector for residential development. The City of Oak Ridge has requested acquisition of Parcel A2 for residential and industrial development. The purpose of the proposed action is to transfer Parcel A2 to the City of Oak Ridge for residential and industrial development. The need for the proposed action is for DOE to respond to the General Services Administration directive to dispose of Parcel A2 and to respond to the request by the City of Oak Ridge for its acquisition and development. The proposed sale of Parcel A2 would have no environmental impacts; however, the subsequent development by the City would affect the existing environment. It is the potential effects of the City`s development of Parcel A2 that are addressed by this environmental assessment (EA). Areas of concern include land use, air quality, hydrology and water quality, wetlands and floodplains, ecological resources, and socioeconomic resources.

  14. Natural Areas Analysis and Evaluation: Oak Ridge Reservation

    SciTech Connect

    Baranski, Micahel J

    2009-11-01

    discussion among natural resources personnel will likely reveal possibilities for refinement and some additional factors that should be included in the evaluation. Despite the limitations, this study, as conducted, illustrates the importance of the Oak Ridge Reservation for protecting the nation s increasingly threatened and declining biodiversity.

  15. Quantitative analysis of Bordeaux red wine precipitates by solid-state NMR: Role of tartrates and polyphenols.

    PubMed

    Prakash, Shipra; Iturmendi, Nerea; Grelard, Axelle; Moine, Virginie; Dufourc, Erick

    2016-05-15

    Stability of wines is of great importance in oenology matters. Quantitative estimation of dark red precipitates formed in Merlot and Cabernet Sauvignon wine from Bordeaux region for vintages 2012 and 2013 was performed during the oak barrel ageing process. Precipitates were obtained by placing wine at -4°C or 4°C for 2-6 days and monitored by periodic sampling during a one-year period. Spectroscopic identification of the main families of components present in the precipitate powder was performed with (13)C solid-state CPMAS NMR and 1D and 2D solution NMR of partially water re-solubilized precipitates. The study revealed that the amount of precipitate obtained is dependent on vintage, temperature and grape variety. Major components identified include potassium bitartrate, polyphenols, polysaccharides, organic acids and free amino acids. No evidence was found for the presence of proteins. The influence of main compounds found in the precipitates is discussed in relation to wine stability. PMID:26775965

  16. Quantitative analysis of Bordeaux red wine precipitates by solid-state NMR: Role of tartrates and polyphenols.

    PubMed

    Prakash, Shipra; Iturmendi, Nerea; Grelard, Axelle; Moine, Virginie; Dufourc, Erick

    2016-05-15

    Stability of wines is of great importance in oenology matters. Quantitative estimation of dark red precipitates formed in Merlot and Cabernet Sauvignon wine from Bordeaux region for vintages 2012 and 2013 was performed during the oak barrel ageing process. Precipitates were obtained by placing wine at -4°C or 4°C for 2-6 days and monitored by periodic sampling during a one-year period. Spectroscopic identification of the main families of components present in the precipitate powder was performed with (13)C solid-state CPMAS NMR and 1D and 2D solution NMR of partially water re-solubilized precipitates. The study revealed that the amount of precipitate obtained is dependent on vintage, temperature and grape variety. Major components identified include potassium bitartrate, polyphenols, polysaccharides, organic acids and free amino acids. No evidence was found for the presence of proteins. The influence of main compounds found in the precipitates is discussed in relation to wine stability.

  17. Manufacturing overview at the Department of Energy Oak Ridge facilities

    SciTech Connect

    Riepe, R.C.

    1993-08-20

    Recent changes in the Oak Ridge Y-12 Plant mission make possible the access by industry to a national resource with a history of manufacturing high precision components from conventional, exotic, and hazardous materials. Turning, milling, grinding, and many nontraditional machining techniques combined with high- accuracy dimensional inspection, nontraditional testing, and a broad range of surface treatments/coatings support national programs requiring the highest possible quality. The Centers for Manufacturing Technology (1-800-356-4USA) at the Oak Ridge Y-12 Plant site provide an impressive mix of resources and opportunities to American industry.

  18. Crown cover chart for oak savannas. Forest Service technical brief

    SciTech Connect

    Law, J.R.; Johnson, P.S.; Houf, G.

    1994-07-01

    Although oak savannas have been defined in many ways, they are characterized by scattered trees, largely comprised of oaks, and a sparse ground layer rich in grasses and forbs. The crown cover chart can be used to estimate the crown cover of trees as a percent of total area. Potential applications of the chart include monitoring changes in savanna crown cover, determining needed reductions in crown cover, and defining the savanna state. in restoring savannas that have grown into closed canopy stands, one can use the chart to estimate initial crown cover before restoration work is begun and again after crown cover has been reduced.

  19. Process data in safeguards at the Oak Ridge National Laboratory

    SciTech Connect

    Ehinger, M.H.

    1988-01-01

    The desire to improve timeliness and sensitivity of material control and accounting capabilities is the basis for evaluation and upgrade of regulatory requirements throughout the nuclear industry. Improvements invariably require better measurement capabilities and more frequent measurements. Operating plants typically include a broad range of measurements and equipment devoted to process control. How can these measurements be used to benefit safeguards. A part of the Consolidated Fuel Reprocessing Program at the Oak Ridge National Laboratory has focused on the use of process data for safeguards. This report discusses recent safeguards demonstrations and current activities in a test facility at Oak Ridge.

  20. Improved genetic transformation of cork oak (Quercus suber L.).

    PubMed

    Alvarez-Fernández, Rubén; Ordás, Ricardo-Javier

    2012-01-01

    An Agrobacterium-mediated transformation system for selected mature Quercus suber L. trees has been established. Leaf-derived somatic embryos in an early stage of development are inoculated with an AGL1 strain harboring a kanamycin-selectable plasmid carrying the gene of interest. The transformed embryos are induced to germinate and the plantlets transferred to soil. This protocol, from adult cork oak to transformed plantlet, can be completed in about one and a half years. Transformation efficiencies (i.e., percentage of inoculated explants that yield independent transgenic embryogenic lines) vary depending on the cork oak genotype, reaching up to 43%.

  1. Relationships between live tree diameter and cavity abundance in a Missouri oak-hickory forest

    USGS Publications Warehouse

    Allen, Arthur W.; Corn, Janelle G.

    1990-01-01

    We quantified relationships between mean dbh of live, dominant and codominant trees, and cavity abundance in an oak-hickory forest in southeast Missouri. Inspection of 3,981 trees >12.7 cm dbh in 107 0.1-ha plots indicated that cavities occurred in 19.9% of all trees. White oak, black oak, scarlet oak, and hickories composed 97% of the sample. Black oak contained the greatest number and frequency of cavities; white oak had the fewest cavities. In general, the proportion of trees with cavities increased as dbh increased, but mean tree dbh per plot explained little of the observed variance in cavity abundance. Correlations between tree diameter and cavity abundance were poor because of the wide variety of factors that affect cavity development in living trees. Differences in cavity occurrence among tree species suggest that black and scarlet oaks should be selected over hickories and white oak when managing for cavity trees.

  2. Ancient blue oaks reveal human impact on San Francisco Bay salinity

    USGS Publications Warehouse

    Stahle, David W.; Therrell, Matthew D.; Cleaveland, Malcolm K.; Cayan, Daniel R.; Dettinger, Michael D.; Knowles, Noah

    2001-01-01

    San Francisco Bay is one of the most important estuaries on the west coast of the Americas. Its water quality is controlled primarily by streamflow from the Sacramento and San Joaquin rivers. In fact, freshwater inflow from the Sacramento-San Joaquin Delta explains 86% of the salinity variability at the mouth of the San Francisco Bay estuary [Peterson et al., 1989]. The massive diversion of streamflow by the California State Water Project and the Central Valley Project, part of the largest manmade water control system on Earth [Reisner, 1988], has raised salinity in the estuary on daily, seasonal, and annual timescales [Nichols et al., 1986; Peterson et al., 1989].

  3. Surface radiological investigation of Trench 5 in Waste Area Grouping 7 at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Goff, D.D.

    1991-08-01

    A surface radiological investigation of areas encompassing Trench 5 on the Oak Ridge Reservation (ORR) was conducted from May 1990 through November 1990. This survey was led by the author, assisted by various members of the Measurement Applications and Development (MAD) group of the Health and Safety Research Division (HASRD) of Oak Ridge National Laboratory (ORNL) in Oak Ridge, Tennessee. The purpose of the investigation was to determine the presence, nature, and extent of surface radiological contamination at Trench 5, the Homogeneous Reactor Experiment fuel wells, and surrounding areas. Based on the data obtained in the field, interim corrective measures were recommended to limit human exposure to radioactivity and to minimize insult to the environment. It should be stressed that this project was not intended to be a complete site characterization but rather to be a preliminary investigation into the potential contamination problem that might exist as a result of past operations at Trench 5.

  4. Registration of 'Red Ruby' Wheat

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Red Ruby’ soft red winter wheat (Triticum aestivum L.) was developed by the Michigan Agricultural Experiment Station and released in 2007 via an exclusive licensing agreement through Michigan State University (MSU) Technologies. Red Ruby was selected from the cross Pioneer ‘2552’/Pioneer ‘2737W’ ma...

  5. Proposed plan for the United Nuclear Corporation Disposal Site at the Oak Ridge Y-12 Plant, Oak Ridge, Tennessee

    SciTech Connect

    Not Available

    1991-03-01

    The US Department of Energy (DOE) in compliance with Section 117(a) of the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) of 1980, as amended by the Superfund Amendments and Reauthorization Act (SARA) of 1986, is releasing the proposed plan for remedial action at the United Nuclear Corporation (UNC) Disposal Site located at the DOE Oak Ridge Operations (ORO) Y-12 Plant, Oak Ridge, Tennessee. The purpose of this document is to present and solicit for comment to the public and all interested parties the preferred plan'' to remediate the UNC Disposal Site. However, comments on all alternatives are invited.

  6. Solute accumulation of chestnut oak and dogwood leaves in response to throughfall manipulation of an upland oak forest.

    PubMed

    Gebre, G Michael; Tschaplinski, Timothy J

    2002-03-01

    To determine the biochemical basis of osmotic adjustment, seasonal and treatment differences in foliar water- soluble organic solutes and inorganic ions were investigated for two hardwood species that exhibited osmotic adjustment in a Throughfall Displacement Experiment at the Walker Branch Watershed near Oak Ridge, Tennessee. Leaf samples of overstory and understory chestnut oak (Quercus prinus L.) and understory dogwood (Cornus florida L.) were collected during the 1994 (wet) and 1995 (dry) growing seasons from each of three treatments: dry (-33% throughfall), ambient (control) and wet (+33% throughfall). Foliar soluble carbohydrates and organic acids were measured by gas chromatography-mass spectrometry. During May 1994, when the demand for sucrose was greatest, dogwood accumulated small amounts of glucose, quinic acid and Mg2+, offsetting a decline in nitrate concentration. As the mild drought continued and tree growth slowed, there was a significant accumulation of sucrose in dogwood in the dry treatment in June, and a trend toward increased K+. In overstory chestnut oak in the dry treatment over the same period, there were significant accumulations of fructose, glucose and K+, and a trend toward increased quinic acid accumulation. Sucrose did not become a key osmotically active compound in chestnut oak until August 1994. In 1995, with the exception of understory chestnut oak, there was no accumulation of K+ in either species. During the severe drought of 1995, monosaccharides, particularly glucose and fructose, accounted for most of the osmotic adjustment in both species. Among solutes, glucose constituted the largest accumulation in dogwood in the dry treatment in August 1995, followed by fructose and sucrose. There was only a moderate increase in solutes in chestnut oak trees in 1995, with fructose and glucose constituting over 50% of the predicted solute accumulation in July. Both species accumulated a wider array of solutes during the dry year than during

  7. Hydrologic data summary for the White Oak Creek watershed at Oak Ridge National Laboratory, Oak Ridge, Tennessee, January--December 1994

    SciTech Connect

    Borders, D.M.; Ziegler, K.S.; Reece, D.K.; Watts, J.A.; Frederick, B.J.; McCalla, W.L.; Pridmore, D.J.

    1995-08-01

    This report summarizes, for the 12-month period January through December 1994, the available dynamic hydrologic data collected on the White Oak Creek (WOC) watershed as well as information collected on surface flow systems in the surrounding vicinity that may affect the quality or quantity of surface water in the watershed. The collection of hydrologic data is one component of numerous, ongoing Oak Ridge National Laboratory (ORNL) environmental studies and monitoring programs and is intended to characterize the quantity and quality of water in the surface flow system, assist with the planning and assessment of remedial action activities, provide long-term availability of data and quality assurance of these data, and support long-term measures of contaminant fluxes at a spatial scale to provide a comprehensive picture of watershed performance that is commensurate with future remedial actions.

  8. 76 FR 65190 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-10-20

    ..., Department of Energy Oak Ridge Operations Office, P.O. Box 2001, EM-90, Oak Ridge, TN 37831. Phone (865) 241... Laboratory Hot Cell Cleanup. Public Participation: The EM SSAB, Oak Ridge, welcomes the attendance of the... Melyssa P. Noe at least seven days in advance of the meeting at the phone number listed above....

  9. 75 FR 7576 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-02-22

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, March 10, 2010, 6 p.m. ADDRESSES: DOE Information Center, 475 Oak...

  10. 75 FR 65466 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-10-25

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, November 10, 2010, 6 p.m. ADDRESSES: DOE Information Center, 475 Oak...

  11. 78 FR 63171 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation; Meeting

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-10-23

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation; Meeting AGENCY: Department of... Management Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act..., Office of Science and Technical Information, 1 Science.gov Way, Oak Ridge, Tennessee 37830. FOR...

  12. 77 FR 29996 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-05-21

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Science.gov Way, Oak Ridge, Tennessee 37830. FOR FURTHER INFORMATION CONTACT: Melyssa P. Noe,...

  13. 76 FR 52944 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-08-24

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, September 14, 2011, 6 p.m. ADDRESSES: DOE Information Center, 475 Oak...

  14. 75 FR 57462 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-09-21

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, October 13, 2010, 6 p.m. ADDRESSES: DOE Information Center, 475 Oak...

  15. 78 FR 12746 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-02-25

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub..., Office of Science and Technical Information, 1 Science.gov Way, Oak Ridge, Tennessee 37830. FOR...

  16. 76 FR 78908 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-12-20

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, January 11, 2012; 6 p.m. ADDRESSES: DOE Information Center, 475 Oak...

  17. 76 FR 59393 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-09-26

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, October 12, 2011; 6 p.m. ADDRESSES: DOE Information Center, 475 Oak...

  18. 78 FR 49738 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-08-15

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Center, Office of Science and Technical Information, 1 Science.gov Way, Oak Ridge, Tennessee 37830....

  19. 77 FR 23470 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-04-19

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Science.gov Way, Oak Ridge, Tennessee 37830. FOR FURTHER INFORMATION CONTACT: Melyssa P. Noe,...

  20. 76 FR 36101 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-06-21

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, July 13, 2011 at 6 p.m. ADDRESSES: DOE Information Center, 475 Oak...

  1. 76 FR 9572 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-02-18

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, March 9, 2011, 6 p.m. ADDRESSES: DOE Information Center, 475 Oak Ridge...

  2. 77 FR 38275 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-06-27

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy, DoE... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Science.gov Way, Oak Ridge, Tennessee 37830. FOR FURTHER INFORMATION CONTACT: Melyssa P. Noe,...

  3. 76 FR 29732 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-05-23

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, June 8, 2011, 6 p.m. ADDRESSES: DOE Information Center, 475 Oak Ridge...

  4. 75 FR 27998 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-05-19

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, June 9, 2010, 6 p.m. ADDRESSES: DOE Information Center, 475 Oak Ridge...

  5. 75 FR 35447 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-06-22

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, July 14, 2010, 6 p.m. ADDRESSES: DOE Information Center, 475 Oak Ridge...

  6. 78 FR 3890 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-01-17

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub..., Office of Science and Technical Information, 1 Science.gov Way, Oak Ridge, Tennessee 37830. FOR...

  7. 77 FR 2714 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-01-19

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, February 8, 2012; 6 p.m. ADDRESSES: DOE Information Center, 475 Oak...

  8. 77 FR 64494 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-10-22

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub..., Office of Science and Technical Information, 1 Science.gov Way, Oak Ridge, Tennessee 37830. FOR...

  9. 78 FR 17648 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-03-22

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub..., Office of Science and Technical Information, 1 Science.gov Way, Oak Ridge, Tennessee 37830. FOR...

  10. 78 FR 58292 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-09-23

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub..., Office of Science and Technical Information, 1 Science.gov Way, Oak Ridge, Tennessee 37830. FOR...

  11. 77 FR 9219 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-02-16

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy, DoE... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Information, 1 Science.gov Way, Oak Ridge, Tennessee 37830. FOR FURTHER INFORMATION CONTACT: Melyssa P....

  12. 75 FR 24685 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-05-05

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, May 12, 2010, 6 p.m. ADDRESSES: DOE Information Center, 475 Oak Ridge...

  13. 75 FR 51027 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-08-18

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, September 8, 2010, 6 p.m. ADDRESSES: DOE Information Center, 475 Oak...

  14. 77 FR 74836 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-12-18

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub..., Office of Science and Technical Information, 1 Science.gov Way, Oak Ridge, Tennessee 37830. FOR...

  15. 75 FR 71424 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-11-23

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, December 8, 2010, 6 p.m. ADDRESSES: DOE Information Center, 475 Oak...

  16. 78 FR 30911 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-05-23

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub..., Office of Science and Technical Information, 1 Science.gov Way, Oak Ridge, Tennessee 37830. FOR...

  17. 78 FR 23241 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-04-18

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub..., Office of Science and Technical Information, 1 Science.gov Way, Oak Ridge, Tennessee 37830. FOR...

  18. 27 CFR 9.161 - Oak Knoll District of Napa Valley.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2011-04-01 2011-04-01 false Oak Knoll District of Napa... Areas § 9.161 Oak Knoll District of Napa Valley. (a) Name. The name of the viticultural area described in this section is “Oak Knoll District of Napa Valley”. (b) Approved maps. The appropriate maps...

  19. 78 FR 75552 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2013-12-12

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub..., Office of Science and Technical Information, 1 ] Science.gov Way, Oak Ridge, Tennessee 37830. FOR...

  20. 77 FR 49442 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-08-16

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Center, Office of Science and Technical Information, 1 Science.gov Way, Oak Ridge, Tennessee 37830....

  1. 76 FR 22388 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-04-21

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, May 11, 2011; 6 p.m. ADDRESSES: DOE Information Center, 475 Oak Ridge...

  2. 77 FR 58364 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-09-20

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub..., Office of Science and Technical Information, 1 Science.gov Way, Oak Ridge, Tennessee 37830. FOR...

  3. 76 FR 17637 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-03-30

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, April 13, 2011, 6 p.m. ADDRESSES: DOE Information Center, 475 Oak...

  4. 75 FR 13268 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-03-19

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Wednesday, April 14, 2010, 6 p.m. ADDRESSES: DOE Information Center, 475 Oak...

  5. 76 FR 28759 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2011-05-18

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Register. DATES: Thursday, May 26, 2011, 6 p.m. ADDRESSES: DOE Information Center, 475 Oak Ridge...

  6. 77 FR 18243 - Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation

    Federal Register 2010, 2011, 2012, 2013, 2014

    2012-03-27

    ... Environmental Management Site-Specific Advisory Board, Oak Ridge Reservation AGENCY: Department of Energy... Site-Specific Advisory Board (EM SSAB), Oak Ridge Reservation. The Federal Advisory Committee Act (Pub... Science.gov Way, Oak Ridge, Tennessee 37830. FOR FURTHER INFORMATION CONTACT: Melyssa P. Noe,...

  7. Haloanisole and halophenol contamination in Spanish aged red wines.

    PubMed

    Copete, M L; Zalacain, A; Lorenzo, C; Carot, J M; Esteve, M D; Climent, M; Salinas, M R

    2009-01-01

    This is the first study to be carried out on the incidence of halophenols and haloanisoles, including trichloroanisole, in aged red wines. A total of 966 red wines, aged for 6, 12 and 24 months in oak barrels and from different Spanish production areas, were analysed by stir bar sorptive extraction followed by gas chromatography/mass spectrometry (GC/MS). From the wines sampled, 155 (16.1%) were contaminated with one or several compounds, with 7.6, 6.9 and 1.5% corresponding to the 12- (aged-12), 6- (aged-6) and 24-month-aged (aged-24) wines, respectively. The most abundant compounds causing taint were 2,3,4,6-tetrachloroanisole and 2,4,6-trichloroanisol (6.8 and 5.3%, respectively). No 2,4,6-tribromophenol was found in any of the samples. Contamination with halo compounds was highest in samples from South-West Spain, followed by those from Northern Spain. The mean concentration for all compounds were always higher than their respective olfactory threshold, but none of these halo compounds represent a health hazard to humans through the consumption of commercial red aged wines.

  8. Haloanisole and halophenol contamination in Spanish aged red wines.

    PubMed

    Copete, M L; Zalacain, A; Lorenzo, C; Carot, J M; Esteve, M D; Climent, M; Salinas, M R

    2009-01-01

    This is the first study to be carried out on the incidence of halophenols and haloanisoles, including trichloroanisole, in aged red wines. A total of 966 red wines, aged for 6, 12 and 24 months in oak barrels and from different Spanish production areas, were analysed by stir bar sorptive extraction followed by gas chromatography/mass spectrometry (GC/MS). From the wines sampled, 155 (16.1%) were contaminated with one or several compounds, with 7.6, 6.9 and 1.5% corresponding to the 12- (aged-12), 6- (aged-6) and 24-month-aged (aged-24) wines, respectively. The most abundant compounds causing taint were 2,3,4,6-tetrachloroanisole and 2,4,6-trichloroanisol (6.8 and 5.3%, respectively). No 2,4,6-tribromophenol was found in any of the samples. Contamination with halo compounds was highest in samples from South-West Spain, followed by those from Northern Spain. The mean concentration for all compounds were always higher than their respective olfactory threshold, but none of these halo compounds represent a health hazard to humans through the consumption of commercial red aged wines. PMID:19680868

  9. Great Red Spot (GRS)

    NASA Astrophysics Data System (ADS)

    Murdin, P.

    2000-11-01

    A huge permanent anticyclone in Jupiter's southern hemisphere, visible as a reddish oval at just over 20 °S. The earliest unequivocal observation was by Heinrich Schwabe in 1831 (the often-quoted sighting by Robert Hooke in 1664 now seems to have been of a similar but different spot). The GRS became a striking feature around 1880, when it developed a deep red coloration. It was also prominent in ...

  10. Kinetics of Extracellular Peptidases in Sediments of the White Oak River, NC, USA

    NASA Astrophysics Data System (ADS)

    Steen, A. D.; Kevorkian, R. T.; Alperin, M. J.; Lloyd, K. G.

    2013-12-01

    Recent molecular work has shed light on the mechanisms underlying organoheterotrophy in the marine subsurface, including production of extracellular peptidases by deeply-branching Archaea. Here we present measurements of the potential activity (Vmax) and half-saturation constants (Km) for six extracellular peptidase substrates in sediments from 0 to 83 cm deep in the White Oak River estuary, NC, USA. Potential activities at 83 cm were on average 12% of the values at the surface, but because surface Vmax values were several orders of magnitude greater than comparable values from surface seawater, the deep activities were still substantial. Km values did not display a clear trend with depth. Activities consistent with leucyl aminopeptidase were higher than any other extracellular peptidase, but there was no clear division in activities between endopeptidases (which cleave bonds in the interior of proteins) versus aminopeptidases (which cleave N-terminal amino acids). Competitive inhibition experiments will reveal the extent to which the activities we measured reflect the distinct enzymes. We will also present model-based estimates of organic carbon mineralization rates based on methane and sulfate profiles in order to assess the relative importance of extracellular peptidases as a means to acquire organic carbon in the subsurface. Saturation curves for 5 peptidase substrates at the surface and 83 cm in the White Oak River.

  11. White Oak Creek Embayment site characterization and contaminant screening analysis. Environmental Restoration Program

    SciTech Connect

    Blaylock, B.G.; Ford, C.J.; Frank, M.L.; Hoffman, F.O.; Hook, L.A.

    1993-01-01

    Analyses of sediment samples collected near the mouth of White Oak Creek during the summer of 1990 revealed {sup 137}Cs concentrations [> 10{sup 6} Bq/kg dry wt (> 10{sup 4} pCi/g dry wt)] near the sediment surface. Available evidence indicates that these relatively high concentrations of {sup 137}Cs now at the sediment surface were released from White Oak Dam in the mid-1950s and had accumulated at depositionalsites in the embayment. These accumulated sediments are being eroded and transported downstream primarily during winter low-water levels by flood events and by a combination of normal downstream flow and the water turbulence created by the release of water from Melton Hill Dam during hydropower generation cycles. This report provides a more thorough characterization of the extent of contamination in WOCE than was previously available. Environmental samples collected from WOCE were analyzed for organic, inorganic, and radiological contaminants in fish, water, and sediment. These results were used to conduct a human health effects screening analysis. Walkover radiation surveys conducted inside the fenced area surrounding the WOCE at summer-pool (741 ft MSL) and at winter-pool (733 ft MSL) level, indicated a maximum exposure rate of 3 mR h{sup 1} 1 m above the soil surface.

  12. Oaks, Acorns, Climate and Squirrels, An Environmental Investigation.

    ERIC Educational Resources Information Center

    National Wildlife Federation, Washington, DC.

    This environmental unit is one of a series designed for integration within an existing curriculum. The unit is self-contained and requires minimal teacher preparation. The philosophy of the units is based on an experience-oriented process that encourages self-paced independent student work. In this particular unit, oaks and acorns are the vehicle…

  13. Seven Oaks Met School Builds Curriculum around Each Student

    ERIC Educational Resources Information Center

    Pearson, George

    2009-01-01

    This article features Seven Oaks School Division Met School in Winnipeg, a high school that limits class size to 15, tailors its curriculum to the needs and interests of its individual students, places students in community-based internships two days a week, and keeps the teacher--called an advisor--with the same group of students from Grade 9…

  14. Oak Ridge National Laboratory Institutional Plan, FY 1995--FY 2000

    SciTech Connect

    Not Available

    1994-11-01

    This report discusses the institutional plan for Oak Ridge National Laboratory for the next five years (1995-2000). Included in this report are the: laboratory director`s statement; laboratory mission, vision, and core competencies; laboratory plan; major laboratory initiatives; scientific and technical programs; critical success factors; summaries of other plans; and resource projections.

  15. Oak Ridge Reservation. Physical Characteristics and National Resources

    SciTech Connect

    Parr, Patricia Dreyer; Joan, F. Hughes

    2006-10-09

    The topology, geology, hydrology, vegetation, and wildlife of the Oak Ridge Reservation (ORR) provide a complex and intricate array of resources that directly impact land stewardship and use decisions. The purpose of this document is to consolidate general information regarding the natural resources and physical characteristics of the ORR.

  16. Oak Ridge Y-12 Plant groundwater protection program management plan

    SciTech Connect

    1996-06-01

    The Oak Ridge Y- 1 2 Plant (Y-12 Plant) is owned by the United States Department of Energy (DOE) and managed by Lockheed Martin Energy Systems, Inc. (Energy Systems) under contract No. DE-AC05-84OR21400. The Y-12 Plant Groundwater Protection Program (GWPP), which was initiated in 1975, provides for the protection of groundwater resources consistent with Federal, State, and local regulations, and in accordance with DOE orders and Energy Systems policies and procedures. The Y-12 Plant is located in Anderson County, Tennessee, and is within the corporate limits of the City of Oak Ridge. The Y-12 Plant is one of three major DOE complexes that comprise the 37,000-acre Oak Ridge Reservation (ORR) located in Anderson and Roane counties. The Y-12 Plant is located in Bear Creek Valley at an elevation of about 950 feet (ft) above sea level. Bear Creek Valley is bounded on the northwest and southeast, and is isolated from populated areas of Oak Ridge, by parallel ridges that rise about 300 ft above the valley floor. The Y-12 Plant and its fenced buffer area are about 0.6 mile wide by 3.2 miles long and cover approximately 4,900 acres. The main industrialized section encompasses approximately 800 acres.

  17. Oak Ridge Reservation, annual site environmental report for 1993

    SciTech Connect

    Not Available

    1994-11-01

    The US DOE currently oversees activities on the Oak Ridge Reservation, a government-owned, contractor-operated facility. Three sites compose the reservation; Y-12, Oak Ridge National Laboratory, and K-25. This document contains a summary of environmental monitoring activities on the Oak Ridge Reservation (ORR) and its surroundings. The results summarized in this report are based on the data collected during calendar year (CY) 1993 and compiled in; Environmental Monitoring in the Oak Ridge Reservation: CY 1993 Results. Annual environmental monitoring on the ORR consists of two major activities: effluent monitoring and environmental surveillance. Effluent monitoring is the collection and analysis of samples or measurements of liquid, gaseous, or airborne effluents for the purpose of characterizing and quantifying contaminants and process stream characteristics, assessing radiation and chemical exposures to members of the public, and demonstrating compliance with applicable standards. Environmental surveillance is the collection and analysis of samples of air, water, soil, foodstuffs, biota, and other media from DOE sites and their environs and the measurement of external radiation for purposes of demonstrating compliance with applicable standards, assessing radiation and chemical exposures to members of the public, and assessing effects, if any, on the local environment.

  18. 8. Julia Steele House, interior view detail of oak mantle ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    8. Julia Steele House, interior view detail of oak mantle in front left (south) parlor, with north wall pocket door to left of view. - Julia Steele House, 5875 Paris Road (US Highway 27/68); 1 1/5 miles north of Bourbon County line, Paris, Bourbon County, KY

  19. Community-Based Ecological Restoration: The Wingra Oak Savanna Project.

    ERIC Educational Resources Information Center

    Bader, Brian J.; Egan, Dave

    1999-01-01

    The University of Wisconsin-Madison Arboretum, a pioneer in ecological restoration, is involving the local community in restoring a site to its presettlement condition as an oak savanna. Besides providing the manual labor of restoration, volunteers learn about the land and the ecological processes that tie nature and culture together. A 60-hour…

  20. Oak Ridge Reservation Annual Site environmental report for 1994

    SciTech Connect

    Koncinski, W.S.

    1995-10-01

    This report presents the details of the environmental monitoring and management plan for the Oak Ridge Reservation. Topics include: site and operations overview; environmental compliance strategies; environmental management program; effluent monitoring; environmental surveillance; radiation doses; chemical doses; ground water; and quality assurance.

  1. Phytophthora ramorum causes cryptic bole cankers in Canyon line Oak

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Unusual mortality of large canyon live oaks was observed in natural stands in San Mateo, California starting in 2007. A survey of affected stands showed that symptomatic trees were spatially associated with California bay, the primary source of Phytophthora ramorum spores in this forest type. Trunk ...

  2. The Pacific Oaks College's Prism Principles Professional Development Approach

    ERIC Educational Resources Information Center

    Beyer, Kalani

    2012-01-01

    In a struggling atmosphere for education, one college is optimistic about the future by offering school districts its PRISM Principles professional development as a means to ensure that "no child is left behind." Pacific Oaks College & Children's School is known for its premiere programs in early childhood education, human…

  3. Retrodeformable cross sections and Oak Ridge fault, Ventura basin, California

    SciTech Connect

    Yeats, R.S.; Huftile, G.F.

    1988-03-01

    A retrodeformable (balanced) cross section is constructed such that stratified rocks are restored to their undeformed state without loss or gain of bed length or bed thickness. Ductile strata may be area-balanced if original thickness is known. Near Ventura, folds in Pliocene-Pleistocene turbidites and Miocene-early Pliocene shales (Rincon, Monterey, Sisquoc) overlie an unfolded competent Paleogene sequence. The basal decollement of the foldbelt is in the ductile Rincon Formation (lower Miocene). The overlying Sulphur Mountain, Ventura Avenue, San Miguelito, and Rincon anticlines are fault-propagation folds developing from south-dipping, largely late Quaternary frontal ramp thrusts (Sisar-Big Canyon-Lion fault set, Barnard fault set, padre Juan fault, and C-3 fault, respectively) that rise from the decollement. Cross-section balancing shows that the overlying fold-thrust belt has shortened 2.5-6 km more than subjacent Paleogene competent strata. This excess bed length is taken up in the Paleogene sequence on the Oak Ridge fault as a ramp from the brittle-plastic transition zone through the upper crust. This implies that the basal decollement is the frontal active thrust of the Oak Ridge fault. The decollement dies out southeast of a line between Timber Canyon oil field and the west end of Oak Ridge, possibly because of decreased ductility in the Miocene decollement sequence due to appearance of sandstone interbeds. Farther southeast, late Quaternary displacement concentrated on the Oak Ridge fault itself at rates greater than 10 mm/year.

  4. The Meaning of Play: Perspectives from Pacific Oaks College.

    ERIC Educational Resources Information Center

    Lakin, Mary Beth

    Graduate students enrolled in the play-based Curriculum Research Seminar at Pacific Oaks College (Pasadena) observed and wrote about how children began play and carried out various themes in early childhood settings, and how teachers encouraged or discouraged play themes. Findings indicated that some students related play to issues of bias,…

  5. Susceptibility of sprouted oak acorns to Phytophthora ramorum zoospores

    Technology Transfer Automated Retrieval System (TEKTRAN)

    Phytophthora ramorum is a recently emerged pathogen, having established in Europe and several western U.S. states, including California and Oregon. It has a wide host range and is a threat to forest ecology and the nursery industry. In California, coast live oak (Quercus agrifolia) is a major host...

  6. 96. HISTORIC PHOTOGRAPH, VIEW OF 'LAPHAM OAK,' NEW CANAAN, CA. ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    96. HISTORIC PHOTOGRAPH, VIEW OF 'LAPHAM OAK,' NEW CANAAN, CA. 1940. FROM HIGHWAY COMMISSIONER'S REPORT ON THE HIGHWAY DEPARTMENT AND MERRITT PARKWAY TO THE GOVERNOR. COLLECTION GEORGE L. LARNED. - Merritt Parkway, Beginning in Greenwich & running 38 miles to Stratford, Greenwich, Fairfield County, CT

  7. Environmental Compliance and Protection Program Description Oak Ridge, Tennessee

    SciTech Connect

    Bechtel Jacobs

    2009-02-26

    The objective of the Environmental Compliance and Protection (EC and P) Program Description (PD) is to establish minimum environmental compliance requirements and natural resources protection goals for the Bechtel Jacobs Company LLC (BJC) Oak Ridge Environmental Management Cleanup Contract (EMCC) Contract Number DE-AC05-98OR22700-M198. This PD establishes the work practices necessary to ensure protection of the environment during the performance of EMCC work activities on the US Department of Energy's (DOE's) Oak Ridge Reservation (ORR) in Oak Ridge, Tennessee, by BJC employees and subcontractor personnel. Both BJC and subcontractor personnel are required to implement this PD. A majority of the decontamination and demolition (D and D) activities and media (e.g., soil and groundwater) remediation response actions at DOE sites on the ORR are conducted under the authority of the Comprehensive Environmental Response, Compensation, and Liability Act of 1980 (CERCLA). CERCLA activities are governed by individual CERCLA decision documents (e.g., Record of Decision [ROD] or Action Memorandum) and according to requirements stated in the Federal Facility Agreement for the Oak Ridge Reservation (DOE 1992). Applicable or relevant and appropriate requirements (ARARs) for the selected remedy are the requirements for environmental remediation responses (e.g., removal actions and remedial actions) conducted under CERCLA.

  8. Technology Solutions Case Study: Foundation Heat Exchanger, Oak Ridge, Tennessee

    SciTech Connect

    2014-03-01

    The foundation heat exchanger, developed by Oak Ridge National Laboratory, is a new concept for a cost-effective horizontal ground heat exchanger that can be connected to water-to-water or water-to-air heat pump systems for space conditioning as well as domestic water heating.

  9. 95. PHOTO REPRODUCTION OF 'LAPHAM OAK', NEW CANAAN, CA. 1940. ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    95. PHOTO REPRODUCTION OF 'LAPHAM OAK', NEW CANAAN, CA. 1940. FROM HIGHWAY COMMISSIONER'S REPORT ON THE HIGHWAY DEPARTMENT AND MERRITT PARKWAY TO THE GOVERNOR. CONNECTICUT STATE LIBRARY AND ARCHIVES. - Merritt Parkway, Beginning in Greenwich & running 38 miles to Stratford, Greenwich, Fairfield County, CT

  10. Soil Management Plan for the Oak Ridge Y-12 National Security Complex Oak Ridge, Tennessee

    SciTech Connect

    2005-03-02

    This Soil Management Plan applies to all activities conducted under the auspices of the National Nuclear Security Administration (NNSA) Oak Ridge Y-12 National Security Complex (Y-12) that involve soil disturbance and potential management of waste soil. The plan was prepared under the direction of the Y-12 Environmental Compliance Department of the Environment, Safety, and Health Division. Soil disturbances related to maintenance activities, utility and building construction projects, or demolition projects fall within the purview of the plan. This Soil Management Plan represents an integrated, visually oriented, planning and information resource tool for decision making involving excavation or disturbance of soil at Y-12. This Soil Management Plan addresses three primary elements. (1) Regulatory and programmatic requirements for management of soil based on the location of a soil disturbance project and/or the regulatory classification of any contaminants that may be present (Chap. 2). Five general regulatory or programmatic classifications of soil are recognized to be potentially present at Y-12; soil may fall under one or more these classifications: (a) Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) pursuant to the Oak Ridge Reservation (ORR) Federal Facilities Agreement; (b) Resource Conservation and Recovery Act (RCRA); (c) RCRA 3004(u) solid waste managements units pursuant to the RCRA Hazardous and Solid Waste Amendments Act of 1984 permit for the ORR; (d) Toxic Substances and Control Act-regulated soil containing polychlorinated biphenyls; and (e) Radiologically contaminated soil regulated under the Atomic Energy Act review process. (2) Information for project planners on current and future planned remedial actions (RAs), as prescribed by CERCLA decision documents (including the scope of the actions and remedial goals), land use controls implemented to support or maintain RAs, RCRA post-closure regulatory requirements for

  11. Lighting intensity of the soilsurface and restocking of oak groves

    NASA Astrophysics Data System (ADS)

    Slepykh, Victor; Zubko, Anna; Povolotckaia, Nina

    2016-04-01

    Oak groves of Caucasian Mineral Vody region (CMVR) possess a high ecological and balneological potential which defines the significance of their preservation and reproduction [1]. The role assessment of lighting intensity on renewal of oak groves was carried out on four trial squares (ts) in natural sixty-seven years old forest stand with prevalence of English oak (Quercus robur L.) with unimodal sity (type of the habitat - C1). The illumination was measured at the grass level by the universal measuring instrument of meteoparameters ATT-9508 with an illumination sensor of ATA-1591. The assessment of reforestation was carried out according to the established standards [2]. In the winter of 2005 there was conducted a selecting cutting cabin of the forest stand according to a local method on ts2 with intensity 30%, on ts4 - 50% after which the illumination on the soil surface in relation to illumination of an open place in the summer of 2005 increased from 4.9% to 33.9% on ts2, and from 5.9% to 24.4% on ts4. But by 2014 the illumination decreased till 3.0% on ts2, till 5.4% on ts4 because of an intensive soil grassing down. The control was carried out by ts1 and ts3 on which from 2005 to 2014 the illumination of the soil surface decreased from 4 to 2% as a result of the development of all storeys. As a result due to an intensive soil grassing-down, the total quantity of young oak trees decreased from 2005 to 2014 from 25.6 thousand pcs/ha to 5.9 thousand pcs/ha on ts2; on from 17.3 thousand pcs/ha to 4.0 thousand pcs/ha on ts4. At the same time the total quantity of young oak trees on control squares increased respectively for 1.4% (from 18.8 thousand pcs/ha to 19.1 thousand pcs/ha) on ts1, for 38.7% (from 25.2 thousand pcs/ha to 41.1 thousand pcs/ha). The experiment showed that small young oak trees perishes in the first years of their life from a lack of light and competition from grasland vegetation without providing successful reforestation. Conclusion. So it is

  12. Environmental Monitoring Plan for Waste Area Grouping 6 at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Not Available

    1993-09-01

    This document presents the Environmental Monitoring Plan (EMP) for Waste Area Grouping (WAG) 6 at the Oak Ridge National Laboratory (ORNL). Based on the results of the Resource Conservation and Recovery Act (RCRA) Facility Investigation (RFI) and on subsequent discussions with regulators, a decision was made to defer implementing source control remedial measures at the WAG. The alternative selected to address the risks associated with WAG 6 involves maintenance of site access controls prevent public exposure to on-site contaminants, continued monitoring of contaminant releases determine if source control measures are required, and development of technologies that could support the final remediation of WAG 6. Although active source control measures are not being implemented at WAG 6, environmental monitoring is necessary to ensure that any potential changes in contaminant release from the WAG are identified early enough to take appropriate action. Two types of environmental monitoring will be conducted: baseline monitoring and annual routine monitoring. The baseline monitoring will be conducted to establish the baseline contaminant release conditions at the WAG, confirm the site-related chemicals of concern (COCs), and gather data to confirm the site hydrologic model. The baseline monitoring is expected to begin in 1994 and last for 12--18 months. The annual routine monitoring will consist of continued sampling and analyses of COCs to determine off-WAG contaminant flux and risk, identify mills in releases, and confirm the primary contributors to risk. The annual routine monitoring will continue for {approximately} 4 years after completion of the baseline monitoring.

  13. Environmental monitoring plan for Waste Area Grouping 6 at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    1995-09-01

    This document presents an Environmental Monitoring Plan (EMP) for Waste Area Grouping (WAG 6) at Oak Ridge National Laboratory (ORNL). This document updates a draft monitoring plan developed in 1993. The draft plan was never finalized awaiting resolution of the mechanisms for addressing RCRA concerns at a site where the CERCLA process resulted in a decision to defer action, i.e., postpone closure indefinitely. Over the past two years the Tennessee Department of Environment and Conservation (TDEC), US Department of Energy (DOE), and US Environmental Protection Agency (EPA) Region IV, have agreed that RCRA authority at the site will be maintained through a post- closure permit; ``closure`` in this case referring to deferred action. Both a Revised Closure Plan (DOE 1995a) and a Post-Closure Permit Application (DOE 1995b) have been developed to document this agreement; relevant portions of the EMP will be included in the RCRA Post-Closure Permit Application. As the RCRA issues were being negotiated, DOE initiated monitoring at WAG 6. The purpose of the monitoring activities was to (1) continue to comply with RCRA groundwater quality assessment requirements, (2) install new monitoring equipment, and (3) establish the baseline conditions at WAG 6 against which changes in contaminant releases could be measured. Baseline monitoring is scheduled to end September 30, 1995. Activities that have taken place over the past two years are summarized in this document.

  14. Surface debris inventory at White Wing Scrap Yard, Oak Ridge Reservation, Oak Ridge, Tennessee

    SciTech Connect

    Rodriguez, R.E.; Tiner, P.F.; Williams, J.K.

    1992-08-01

    An inventory of surface debris in designated grid blocks at the White Wing Scrap Yard [Waste Area Grouping 11 (WAG 11)] was conducted intermittently from February through June 1992 by members of the Measurement Applications and Development Group, Health and Safety Research Division, Oak Ridge National Laboratory (ORNL) at the request of ORNL Environmental Restoration (ER) Program personnel. The objectives of this project are outlined in the following four phases: (1) estimate the amount (volume) and type (e.g., glass, metal and plastics) of surface waste material in 30 designated grid blocks (100- by 100-ft grids); (2) conduct limited air sampling for organic chemical pollutants at selected locations (e.g., near drums, in holes, or other potentially contaminated areas); (3) conduct a walkover gamma radiation scan extending outward (approximately 50 ft) beyond the proposed location of the WAG 11 perimeter fence; and (4) recommend one grid block as a waste staging area. This recommendation is based on location and accessibility for debris staging/transport activities and on low levels of gamma radiation in the grid block.

  15. Site characterization report for the Old Hydrofracture Facility at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    1995-01-01

    Several Old Hydrofracture Facility (OHF) structures (i.e., Building 7852, the bulk storage bins, the pump house, water tank T-5, and pump P-3) are surplus facilities at Oak Ridge National Laboratory (ORNL) slated for decontamination and decommissioning (D and D). OHF was constructed in 1963 to allow experimentation and operations with an integrated solids storage, handling, mixing, and grout injection facility. It was shut down in 1980 and transferred to ORNL`s Surveillance and Maintenance Program. The hydrofracture process was a unique disposal method that involved injecting waste materials mixed with grout and additives under pumping pressures of 2,000 psi or greater into a deep, low-permeability shale formation. The injected slurry spread along fractures and bedding planes for hundreds of feet from the injection points, forming thin grout sheets (often less than 1/8 in. thick). The grout ostensibly immobilized and solidified the liquid wastes. Site characterization activities were conducted in the winter and spring of 1994 to collect information necessary to plan the D and D of OHF structures. This site characterization report documents the results of the investigation of OHF D and D structures, presenting data from the field investigation and laboratory analyses in the form of a site description, as-built drawings, summary tables of radiological and chemical contaminant concentrations, and a waste volume estimate. 25 refs., 54 figs., 17 tabs.

  16. Environmental Survey preliminary report, Oak Ridge National Laboratory (X-10), Oak Ridge, Tennessee

    SciTech Connect

    Not Available

    1988-07-01

    This report presents the preliminary findings from the first phase of the Environmental Survey of the US Department of Energy (DOE) Oak Ridge National Laboratory (ORNL), X-10 site, conducted August 17 through September 4, 1987. The Survey is being conducted by an interdisciplinary team of environmental specialists, led and managed by the Office of Environment, Safety and Health's Office of Environmental Audit. Individual team specialists are outside experts supplied by a private contractor. The objective of the Survey is to identify environmental problems and areas of environmental risk associated with ORNL. The Survey covers all environmental media and all areas of environmental regulation. It is being performed in accordance with the DOE Environmental Survey Manual. The on-site phase of the Survey involves the review of existing site environmental data, observations of the operations carried on at ORNL, and interviews with site personnel. The Survey team developed a Sampling and Analysis Plan to assist in further assessing certain of the environmental problems identified during its on-site activities. The Sampling and Analysis Plan will be executed by a DOE National Laboratory or a support contractor. When completed, the results will be incorporated into the Environmental Survey Interim Report for ORNL. The Interim Report will reflect the final determinations of the ORNL Survey. 120 refs., 68 figs., 71 tabs.

  17. Removal site evaluation report on Building 3019B at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    1996-09-01

    This removal site evaluation report on Building 3019B at Oak Ridge National Laboratory was prepared to provide the environmental Restoration Program with information necessary to evaluate whether hazardous and/or radiological contaminants in and around the facility pose a substantial risk to human health or the environment and whether remedial site evaluations or removal actions are, therefore, required. The scope of the project included (1) a search for, and review of, readily available historical records regarding operations and use of the facility (including hazardous substance usage and existing contamination); (2) interviews with facility personnel concerning current and past practices; and (3) a brief walk-through to visually inspect the facility nd identify existing hazard areas requiring maintenance actions or remedial evaluation. The results of the removal site evaluation indicate that areas inside Building 3019B pose no imminent hazard because adequate engineering and administrative controls are in place and enforced within the facility to ensure worker and environmental protection. A maintenance action, however, is being undertaken or proposed. Deteriorated and peeling exterior paint in areas on the west and south walls on the exterior of the building has an uninhibited pathway to the storm water drainage system and can potentially impact the local surface water during periods of storm water runoff. The paint is assumed to be lead based, thus posing a potential problem. In addition, the subsurface of all of the exterior walls may be radiologically contaminated. A maintenance action will be necessary to prevent further deterioration and dislodging of the paint.

  18. Removal site evaluation report on Building 7602 at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    1996-09-01

    This removal site evaluation report for Building 7602 at Oak Ridge National Laboratory was prepared to provide the Environmental Restoration Program with information necessary to evaluate whether hazardous and/or radiological contaminants in and around the facility pose a substantial risk to human health or the environment (i.e., a high probability of adverse effects) and whether remedial site evaluations or removal actions are, therefore, required. The scope of the project included (1) a search for, and review of, readily available historical records regarding operations and use of the facility (including hazardous substance usage and existing contamination); (2) interviews with facility personnel concerning current and past practices; and (3) a brief walk-through to visually inspect the facility and identify existing hazard areas requiring maintenance actions, removal actions, or remedial evaluation. The results of the removal site evaluation indicate that areas associated with Building 7602 pose no imminent hazards requiring maintenance actions. Adequate engineering and administrative controls are in place and enforced within the facility to ensure worker and environmental protection. Current actions that are being taken to prevent further release of contamination and ensure worker safety within Building 7602 are considered adequate until decontamination and decommissioning activities begin. Given the current status and condition of Building 7602, this removal site evaluation is considered complete and terminated.

  19. Removal site evaluation report for the Isotope Facilities at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    1996-07-01

    This removal site evaluation (RmSE) report of the Isotope Facilities at Oak Ridge National Laboratory (ORNL) was prepared to provide the Environmental Restoration Program with information necessary to evaluate whether hazardous and/or radiological contaminants in and around the Isotopes Facility pose a substantial risk to human health or the environment and if remedial site evaluations (RSEs) or removal actions are required. The scope of the project included: (1) a review of historical evidence regarding operations and use of the facility; (2) interviews with facility personnel concerning current and past operating practices; (3) a site inspection; and (4) identification of hazard areas requiring maintenance, removal, or remedial actions. The results of RmSE indicate that no substantial risks exist from contaminants present in the Isotope Facilities because adequate controls and practices exist to protect human health and the environment. The recommended correction from the RmSE are being conducted as maintenance actions; accordingly, this RmSE is considered complete and terminated.

  20. Underground storage tank management plan, Oak Ridge Y-12 Plant, Oak Ridge, Tennessee

    SciTech Connect

    1997-09-01

    The Underground Storage Tank (UST) Program at the Oak Ridge Y-12 Plant was established to locate UST systems at the facility and to ensure that all operating UST systems are free of leaks. UST systems have been removed or upgraded in accordance with Tennessee Department of Environment and Conservation (TDEC) regulations and guidance. With the closure of a significant portion of the USTs, the continuing mission of the UST Management Program is to manage the remaining active UST systems and continue corrective actions in a safe regulatory compliant manner. This Program outlines the compliance issues that must be addressed, reviews the current UST inventory and compliance approach, and presents the status and planned activities associated with each UST system. The UST Program provides guidance for implementing TDEC regulations and guidelines for petroleum UST systems. The plan is divided into three major sections: (1) regulatory requirements, (2) active UST sites, and (3) out-of-service UST sites. These sections describe in detail the applicable regulatory drivers, the UST sites addressed under the Program, and the procedures and guidance for compliance.

  1. Environmental Survey preliminary report, Oak Ridge Gaseous Diffusion Plant, Oak Ridge, Tennessee

    SciTech Connect

    Not Available

    1989-02-01

    This report presents the preliminary findings from the first phase of the Environmental Survey of the US Department of Energy's (DOE) Oak Ridge Gaseous Diffusion Plant (ORGDP) conducted March 14 through 25, 1988. The Survey is being conducted by an interdisciplinary team of environmental specialists, led and managed by the Office of Environment, Safety and Health's Office of Environmental Audit. Individual team components are being supplied by a private contractor. The objective of the Survey is to identify environmental risk associated with ORGDP. The Survey covers all environmental media and all areas of environmental regulation. It is being performed in accordance with the DOE Environmental Survey Manual. This phase of the Survey involves the review of existing site environmental data, observations of the operations carried on at ORGDP, and interviews with site personnel. The Survey team developed a Sampling and Analysis Plan to assist in further assessing certain of the environmental problems identified during is on-site activities. The Sampling and Analysis Plan will be executed by Idaho National Engineering Laboratory (INEL). When completed, the results will be incorporated into the ORGDP Survey findings for in inclusion into the Environmental Survey Summary Report. 120 refs., 41 figs., 74 tabs.

  2. 3001 canal radiological characterization and waste removal report, Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Ritchie, M.G.

    1996-12-01

    An underground steel reinforced concrete transfer and storage canal was built in 1943 and operated as an integral part of the Oak Ridge Graphite Reactor Building (3001) until 1963 when the reactor was shutdown. During operation, the canal was used for under water transfer of irradiated materials and other metals from the reactor in Building 3001 to the Building 3019 hot cell for further processing. After shutdown of the reactor, the canal was used for storage of irradiated materials and fission products until 1990 when the larger materials were removed and stored in the Department of Energy (DOE) approved solid waste management storage facilities. At that time it was discovered that a considerable amount of sludge had accumulated over the intervening years and subsequent analysis showed that the sludge contained Resource Conservation and Recovery Act (RCRA) materials that violated quantities allowed by the RCRA regulations. It was also recognized in 1990 that the canal was losing water to evaporation and the ground at the rate of approximately 400 gallons per day. To maintain water quality; i.e., radionuclide content at or near DOE derived concentration guidelines (DCG), the water in the canal is constantly demineralized using a demineralizer in the Building 3001 and demineralized make up water is supplied from the Building 3004 demineralizer. This report summarizes the 301 Canal Cleanup Task and the solid waste removed from the 3001 Canal in 1996.

  3. Formation and spreading of Red Sea Outflow Water in the Red Sea

    NASA Astrophysics Data System (ADS)

    Zhai, Ping; Bower, Amy S.; Smethie, William M.; Pratt, Larry J.

    2015-09-01

    Hydrographic data, chlorofluorocarbon-12 (CFC-12) and sulfur hexafluoride (SF6) measurements collected in March 2010 and September-October 2011 in the Red Sea, as well as an idealized numerical experiment are used to study the formation and spreading of Red Sea Outflow Water (RSOW) in the Red Sea. Analysis of inert tracers, potential vorticity distributions, and model results confirm that RSOW is formed through mixed-layer deepening caused by sea surface buoyancy loss in winter in the northern Red Sea and reveal more details on RSOW spreading rates, pathways, and vertical structure. The southward spreading of RSOW after its formation is identified as a layer with minimum potential vorticity and maximum CFC-12 and SF6. Ventilation ages of seawater within the RSOW layer, calculated from the partial pressure of SF6 (pSF6), range from 2 years in the northern Red Sea to 15 years at 17°N. The distribution of the tracer ages is in agreement with the model circulation field which shows a rapid transport of RSOW from its formation region to the southern Red Sea where there are longer circulation pathways and hence longer residence time due to basin wide eddies. The mean residence time of RSOW within the Red Sea estimated from the pSF6 age is 4.7 years. This time scale is very close to the mean transit time (4.8 years) for particles from the RSOW formation region to reach the exit at the Strait of Bab el Mandeb in the numerical experiment.

  4. Data base dictionary for the Oak Ridge Reservation Hydrology and Geology Study Groundwater Data Base

    SciTech Connect

    Thompson, B.K.

    1993-04-01

    The Oak Ridge Reservation Hydrology and Geology Study (ORRHAGS) Groundwater Data Base has been compiled to consolidate groundwater data from the three US Department of Energy facilities located on the Oak Ridge Reservation: the Oak Ridge K-25 Site, the Oak Ridge National Laboratory, and the Oak Ridge Y-12 Plant. Each of these facilities maintains its own groundwater and well construction data bases. Data were extracted from the existing data bases, converted to a consistent format, and integrated into the ORRHAGS Groundwater Data Base structures. This data base dictionary describes the data contained in the ORRHAGS Groundwater Data Base and contains information on data base structure, conventions, contents, and use.

  5. Site characterization plan for groundwater in Waste Area Grouping 1 at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Lee, R.R.; Curtis, A.H.; Houlberg, L.M.; Purucker, S.T.; Singer, M.L.; Tardiff, M.F.; Wolf, D.A.

    1994-07-01

    The Waste Area Grouping (WAG) 1 Groundwater Operable Unit (OU) at Oak Ridge National Laboratory (ORNL) in Oak Ridge, Tennessee, is undergoing a site characterization to identify environmental contamination that may be present. This document, Site Characterization Report for Groundwater in Waste Area Grouping I at Oak Ridge National Laboratory, Oak Ridge, Tennessee, identifies areas of concern with respect to WAG 1 groundwater and presents the rationale, justification, and objectives for conducting this continuing site characterization. This report summarizes the operations that have taken place at each of the areas of concern in WAG 1, summarizes previous characterization studies that have been performed, presents interpretations of previously collected data and information, identifies contaminants of concern, and presents an action plan for further site investigations and early actions that will lead to identification of contaminant sources, their major groundwater pathways, and reduced off-site migration of contaminated groundwater to surface water. Site characterization Activities performed to date at WAG I have indicated that groundwater contamination, principally radiological contamination, is widespread. An extensive network of underground pipelines and utilities have contributed to the dispersal of contaminants to an unknown extent. The general absence of radiological contamination in surface water at the perimeter of WAG 1 is attributed to the presence of pipelines and underground waste storage tank sumps and dry wells distributed throughout WAG 1 which remove more than about 40 million gal of contaminated groundwater per year.

  6. Oak Ridge National Laboratory Biological Monitoring and Abatement Program for White Oak Creek Watershed and the Clinch River

    SciTech Connect

    Loar, J.M.; Adams, S.M.; Allison, L.J.; Blaylock, B.G.; Boston, H.L.; Huston, M.A.; Kimmel, B.L.; Smith, J.G.; Southworth, G.R.; Stewart, A.J.; Walton, B.T.; Kitchings, J.T.; Olsen, C.R.

    1991-09-01

    On April 1, 1986, a National Pollutant Discharge Elimination System (NPDES) permit was issued for the Oak Ridge National Laboratory (ORNL) (EPA 1986). As specified in Part 3: Special Conditions (Item H) of the permit, a plan for biological monitoring of the Clinch River, White Oak Creek (WOC), Northwest Tributary (NWT) of WOC, Melton Branch (MB), Fifth Creek, and First Creek shall be submitted for approval to the US Environmental Protection Agency (EPA) and the Tennessee Department of Health and Environment (TDHE) within 90 days of the effective date of the permit. The plan, which is referred to in Part 3 (H) of the permit as the Biological Monitoring Plan and Abatement Program (BMPAP), describes characterization monitoring studies to be conducted for the duration of the permit (5 years). In order to be consistent with the terminology used for the Biological Monitoring and Abatement Programs for the Oak Ridge Y-12 Plan and the Oak Ridge K-25 Plant, BMPAP will subsequently be referred to as the Biological Monitoring and Abatement Program (BMAP). The proposed BMAP outlined in this document is based on preliminary discussions held on December 9, 1985, between staff of Martin Marietta Energy Systems, Inc. (ORNL and Central Management), the US Department of Energy (DOE), EPA, and TDHE. 232 refs., 11 figs., 7 tabs.

  7. FY 1995 Remedial Investigation Work Plan for Waste Area Grouping 2 at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Watkins, D.R.; Herbes, S.E.

    1994-12-01

    The purpose of this project is to provide key information needed by decision makers to expedite the process of environmental restoration and to provide the data base required by the Remedial Investigation/Feasibility Study (RI/FS) for Waste Area Grouping (WAG) 2 at Oak Ridge National Laboratory (ORNL). WAG 2 is the major drainage system downgradient of other WAGs that contain significant sources of contamination at ORNL. Field activities to support the remedial investigation for the RI portion include characterization of the nature and extent of contamination in WAG 2 [consisting of White Oak Creek (WOC) and associated tributaries and floodplain, White Oak Lake (WOL), and White Oak Creek Embayment (WOCE)], specifically to support risk-based remediation decisions. The project consists of three phases: Phase 1, initial scoping characterization to determine the need for early action; Phase 2, interim activities during remediation of upslope WAGs to evaluate potential changes in the contamination status of WAG 2 that would necessitate revaluation of the need for early action; and Phase 3, completion of the RI process following remediation of upslope WAGs. Overall RI objectives, consistent with ORNL Environmental Restoration (ER) Program strategic objectives to reduce risks and comply with environmental regulations, are discussed in the WAG 2 Remedial Investigation Plan.

  8. Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus).

    PubMed

    Schroeder, Hilke; Cronn, Richard; Yanbaev, Yulai; Jennings, Tara; Mader, Malte; Degen, Bernd; Kersten, Birgit

    2016-01-01

    To detect and avoid illegal logging of valuable tree species, identification methods for the origin of timber are necessary. We used next-generation sequencing to identify chloroplast genome regions that differentiate the origin of white oaks from the three continents; Asia, Europe, and North America. By using the chloroplast genome of Asian Q. mongolica as a reference, we identified 861 variant sites (672 single nucleotide polymorphisms (SNPs); 189 insertion/deletion (indel) polymorphism) from representative species of three continents (Q. mongolica from Asia; Q. petraea and Q. robur from Europe; Q. alba from North America), and we identified additional chloroplast polymorphisms in pools of 20 individuals each from Q. mongolica (789 variant sites) and Q. robur (346 variant sites). Genome sequences were screened for indels to develop markers that identify continental origin of oak species, and that can be easily evaluated using a variety of detection methods. We identified five indels and one SNP that reliably identify continent-of-origin, based on evaluations of up to 1078 individuals representing 13 white oak species and three continents. Due to the size of length polymorphisms revealed, this marker set can be visualized using capillary electrophoresis or high resolution gel (acrylamide or agarose) electrophoresis. With these markers, we provide the wood trading market with an instrument to comply with the U.S. and European laws that require timber companies to avoid the trade of illegally harvested timber. PMID:27352242

  9. Absorption, metabolism, and effects at transcriptome level of a standardized French oak wood extract, Robuvit, in healthy volunteers: pilot study.

    PubMed

    Natella, Fausta; Leoni, Guido; Maldini, Mariateresa; Natarelli, Lucia; Comitato, Raffaella; Schonlau, Frank; Virgili, Fabio; Canali, Raffaella

    2014-01-15

    The consumption of wine and spirits, traditionally aged in oak barrels, exposes humans to roburin ingestion. These molecules belong to a class of ellagitannins (ETs), and their only known source is oak wood. Very little is currently known about roburin bioavailability and biological activity. We reported for the first time human absorption of roburins from a French oak wood (Quercus robur) water extract (Robuvit) by measuring the increase of total phenols (from 0.63 ± 0.06 to 1.26 ± 0.18 μg GAE equiv/mL plasma) and the appearance of roburin metabolites (three different glucoronidate urolithins and ellagic acid), in plasma, after 5 days of supplementation. Robuvit supplementation induced also the increase of plasma antioxidant capacity from 1.8 ± 0.05 to 1.9 ± 0.01 nmol Trolox equiv/mL plasma. Moreover, utilizing a combined ex vivo cell culture approach, we assessed the effect of Q. robur metabolites (present in human serum after supplementation) on gene expression modulation, utilizing an Affymetrix array matrix, in endothelial, neuronal, and keratinocyte cell lines. The functional analysis reveals that Robuvit metabolites affect ribosome, cell cycle, and spliceosome pathways.

  10. Development of Molecular Markers for Determining Continental Origin of Wood from White Oaks (Quercus L. sect. Quercus)

    PubMed Central

    Schroeder, Hilke; Cronn, Richard; Yanbaev, Yulai; Jennings, Tara; Mader, Malte; Degen, Bernd; Kersten, Birgit

    2016-01-01

    To detect and avoid illegal logging of valuable tree species, identification methods for the origin of timber are necessary. We used next-generation sequencing to identify chloroplast genome regions that differentiate the origin of white oaks from the three continents; Asia, Europe, and North America. By using the chloroplast genome of Asian Q. mongolica as a reference, we identified 861 variant sites (672 single nucleotide polymorphisms (SNPs); 189 insertion/deletion (indel) polymorphism) from representative species of three continents (Q. mongolica from Asia; Q. petraea and Q. robur from Europe; Q. alba from North America), and we identified additional chloroplast polymorphisms in pools of 20 individuals each from Q. mongolica (789 variant sites) and Q. robur (346 variant sites). Genome sequences were screened for indels to develop markers that identify continental origin of oak species, and that can be easily evaluated using a variety of detection methods. We identified five indels and one SNP that reliably identify continent-of-origin, based on evaluations of up to 1078 individuals representing 13 white oak species and three continents. Due to the size of length polymorphisms revealed, this marker set can be visualized using capillary electrophoresis or high resolution gel (acrylamide or agarose) electrophoresis. With these markers, we provide the wood trading market with an instrument to comply with the U.S. and European laws that require timber companies to avoid the trade of illegally harvested timber. PMID:27352242

  11. Morphology of foliar trichomes of the Chinese cork oak Quercus variabilis by electron microscopy and three-dimensional surface profiling.

    PubMed

    Kim, Ki Woo; Cho, Do-Hyun; Kim, Pan-Gi

    2011-06-01

    Morphology of foliar trichomes was analyzed in Quercus variabilis by electron microscopy and three-dimensional surface profiling. Leaves from suppressed or dominant sprouts of the oak species were collected after a forest fire to unravel the effects of the disturbance factor on sprouting of the oak species. Scanning electron microscopy revealed two types of trichomes depending on the leaf surface. The trichomes on the adaxial surface were branched and constricted, and possessed a single row of thin-walled cells with a collapsed morphology (glandular branched uniseriate trichomes). Meanwhile, the trichomes on the abaxial surface were star-shaped, unfused with each other, and had 6 to 10 rays (nonglandular simple stellate trichomes). An apparent proliferation of trichomes was evident on the adaxial surface of the dominant sprouts. Uniseriate trichomes could be discernable as an elevation from the surface by white light scanning interferometry. By transmission electron microscopy, thin and convoluted cell wall, degenerated cytoplasm, and a single row of cells were characteristic of the trichomes on the adaxial surface. The thick cell walls of the mature trichomes on the abaxial surface represented the nonglandular nature. This is the first report on the morphological and ultrastructural characterization of foliar trichomes of the oak species.

  12. Phase I remedial investigation report of Waste Area Grouping 2 at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Miller, D.E.

    1995-07-01

    This report presents the activities and findings of the first phase of a three-phase remedial investigation (RI) of Waste Area Grouping (WAG) 2 at Oak Ridge National Laboratory (ORNL) in Oak Ridge, Tennessee, and updates the scope and strategy for WAG-2-related efforts. WAG 2 contains White Oak Creek (WOC) and its tributaries downstream of the ORNL main plant area, White Oak Lake, White Oak Creek Embayment on the Clinch River, and the associated floodplain and subsurface environment. Water, sediment, soil, and biota in WAG 2 are contaminated and continue to receive contaminants from upgradient WAGs. This report includes field activities completed through October 1992. The remediation of WAG 2 is scheduled to follow the cessation of contaminant input from hydrologically upgradient WAGs. While upgradient areas are being remediated, the strategy for WAG 2 is to conduct a long-term monitoring and investigation program that takes full advantage of WAG 2`s role as an integrator of contaminant fluxes from other ORNL WAGs and focuses on four key goals: (1) Implement, in concert with other programs, long-term, multimedia environmental monitoring and tracking of contaminants leaving other WAGs, entering WAG 2, and being transported off-site. (2) Provide a conceptual framework to integrate and develop information at the watershed-level for pathways and processes that are key to contaminant movement, and so support remedial efforts at ORNL. (3) Provide periodic updates of estimates of potential risk (both human health and ecological) associated with contaminants accumulating in and moving through WAG 2 to off-site areas. (4) Support the ORNL Environmental Restoration Program efforts to prioritize, remediate, and verify remedial effectiveness for contaminated sites at ORNL, through long-term monitoring and continually updated risk assessments.

  13. Environmental data for the White Oak Creek/White Oak Lake watershed: Environmental Sciences Division publication No. 2779

    SciTech Connect

    Sherwood, C.B.; Loar, J.M.

    1987-01-01

    Oak Ridge National Laboratory (ORNL) is located in the White Oak Creek (WOC) watershed, which drains approximately 16.8 km/sup 2/ (6.5 mile/sup 2/). The waters of WOC are impounded by White Oak Dam at WOC's intersection with White Wing Road (State Route 95), 1.0 km (0.6 mile) upstream from the Clinch River. The resulting White Oak Lake (WOL) is a small, shallow impoundment, whose water level is controlled by a vertical sluice gate that remains in a fixed position during normal operations. White Oak Creek has been utilized for the discharge of treated and untreated wastes from routine operations since the Laboratory's inception. In addition, most of the more recent (1954 to date) liquid and solid low-level-waste disposal operations have been located in the drainage area of WOC. As a federally owned facility, ORNL is required to comply with all existing federal, state, and local environmental regulations regarding waste management. On July 15, 1985, the US Environmental Protection Agency published final rules to incorporate changes in the Resource Conservation and Recovery Act of 1976 that resulted from the passage of the Hazardous and Solid Waste Amendments of 1984. As a part of the rule changes, a new Sect. 3004(u) was added. The new section requires that any facility permit issued after November 8, 1984, include planned corrective actions for all continuing releases of hazardous waste or constituents from any disposal unit at the facility, regardless of when the waste was placed at the disposal unit. This report was prepared to compile existing information on the content and quantity of hazardous substances (both radioactive and nonradioactive) in the WOC/WOL watershed and to provide background information on the geology, hydrology, and ecology of the site for use in planning future remedial actions. 109 refs., 45 figs., 33 tabs.

  14. Red Spot Movie

    NASA Technical Reports Server (NTRS)

    2000-01-01

    This brief movie shows counterclockwise atmospheric motion around Jupiter's Great Red Spot. The clip was made from blue-filter images taken with the narrow-angle camera on NASA's Cassini spacecraft during seven separate rotations of Jupiter between Oct. 1 and Oct. 5, 2000.

    The clip also shows the eastward and westward motion of the zonal jets, seen as the horizontal stripes flowing in opposite directions. The zonal jets circle the planet. As far as can be determined from both Earth-based and spacecraft measurements, the positions and speeds of the jets have not changed for 100 years. Since Jupiter is a fluid planet without a solid boundary, the jet speeds are measured relative to Jupiter's magnetic field, which rotates, wobbling like a top because of its tilt, every 9 hours 55.5 minutes. The movie shows motions in the magnetic reference frame, so winds to the west correspond to features that are rotating a little slower than the magnetic field, and eastward winds correspond to features rotating a little faster.

    Because the Red Spot is in the southern hemisphere, the direction of motion indicates it is a high-pressure center. Small bright clouds appear suddenly to the west of the Great Red Spot. Scientists suspect these small white features are lightning storms. The storms eventually merge with the Red Spot and surrounding jets, and may be the main energy source for the large-scale features.

    The smallest features in the movie are about 500 kilometers (about 300 miles) across. The spacing of the movie frames in time is not uniform; some consecutive images are separated by two Jupiter rotations, and some by one. The images have been re-projected using a simple cylindrical map projection. They show an area from 50 degrees north of Jupiter's equator to 50 degrees south, extending 100 degrees east-west, about one quarter of Jupiter's circumference.

    Cassini is a cooperative project of NASA, the European Space Agency and the Italian Space Agency. The Jet

  15. 27 CFR 19.331 - Use of oak chips in spirits and caramel in brandy and rum.

    Code of Federal Regulations, 2011 CFR

    2011-04-01

    ... 27 Alcohol, Tobacco Products and Firearms 1 2011-04-01 2011-04-01 false Use of oak chips in... Storage of Distilled Spirits Use of Oak Chips and Caramel § 19.331 Use of oak chips in spirits and caramel in brandy and rum. A proprietor may add oak chips that have not been treated with any chemical...

  16. Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species: oak

    PubMed Central

    2010-01-01

    Background The Fagaceae family comprises about 1,000 woody species worldwide. About half belong to the Quercus family. These oaks are often a source of raw material for biomass wood and fiber. Pedunculate and sessile oaks, are among the most important deciduous forest tree species in Europe. Despite their ecological and economical importance, very few genomic resources have yet been generated for these species. Here, we describe the development of an EST catalogue that will support ecosystem genomics studies, where geneticists, ecophysiologists, molecular biologists and ecologists join their efforts for understanding, monitoring and predicting functional genetic diversity. Results We generated 145,827 sequence reads from 20 cDNA libraries using the Sanger method. Unexploitable chromatograms and quality checking lead us to eliminate 19,941 sequences. Finally a total of 125,925 ESTs were retained from 111,361 cDNA clones. Pyrosequencing was also conducted for 14 libraries, generating 1,948,579 reads, from which 370,566 sequences (19.0%) were eliminated, resulting in 1,578,192 sequences. Following clustering and assembly using TGICL pipeline, 1,704,117 EST sequences collapsed into 69,154 tentative contigs and 153,517 singletons, providing 222,671 non-redundant sequences (including alternative transcripts). We also assembled the sequences using MIRA and PartiGene software and compared the three unigene sets. Gene ontology annotation was then assigned to 29,303 unigene elements. Blast search against the SWISS-PROT database revealed putative homologs for 32,810 (14.7%) unigene elements, but more extensive search with Pfam, Refseq_protein, Refseq_RNA and eight gene indices revealed homology for 67.4% of them. The EST catalogue was examined for putative homologs of candidate genes involved in bud phenology, cuticle formation, phenylpropanoids biosynthesis and cell wall formation. Our results suggest a good coverage of genes involved in these traits. Comparative orthologous

  17. COMSOL-Related Activities within the Research Reactors Division of Oak Ridge National Laboratory

    SciTech Connect

    Freels, James D

    2015-01-01

    Our group at Oak Ridge National Laboratory (ORNL) started using COMSOL shortly after version 3.0 was released in the Spring of 2004. Over 11 years later and several new releases of the code, the application usage has grown along with the number of licenses we are responsible for. This paper focuses not on details of results and modeling methods, but instead, takes a look at our past and present applications, and evaluates where we are headed with COMSOL in the future. In doing so, we reveal some lessons learned along our pathway, provide some insight on how best to use COMSOL in a group setting, and perhaps help both users and developers to improve how the code is utilized.

  18. The red ear syndrome

    PubMed Central

    2013-01-01

    Red Ear Syndrome (RES) is a very rare disorder, with approximately 100 published cases in the medical literature. Red ear (RE) episodes are characterised by unilateral or bilateral attacks of paroxysmal burning sensations and reddening of the external ear. The duration of these episodes ranges from a few seconds to several hours. The attacks occur with a frequency ranging from several a day to a few per year. Episodes can occur spontaneously or be triggered, most frequently by rubbing or touching the ear, heat or cold, chewing, brushing of the hair, neck movements or exertion. Early-onset idiopathic RES seems to be associated with migraine, whereas late-onset idiopathic forms have been reported in association with trigeminal autonomic cephalalgias (TACs). Secondary forms of RES occur with upper cervical spine disorders or temporo-mandibular joint dysfunction. RES is regarded refractory to medical treatments, although some migraine preventative treatments have shown moderate benefit mainly in patients with migraine-related attacks. The pathophysiology of RES is still unclear but several hypotheses involving peripheral or central nervous system mechanisms have been proposed. PMID:24093332

  19. Work plan for the Isotopes Facilities Deactivation Project at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    1995-08-01

    The purpose of the Isotopes Facilities Deactivation Project (IFDP) is to place former isotopes production facilities at the Oak Ridge National Laboratory in a safe, stable, and environmentally sound condition; suitable for an extended period of minimum surveillance and maintenance (S and M) and as quickly and economical as possible. Implementation and completion of the deactivation project will further reduce the risks to the environment and to public safety and health. Furthermore, completion of the project will result in significant S and M cost savings in future years. The IFDP work plan defines the project schedule, the cost estimate, and the technical approach for the project. A companion document, the EFDP management plan, has been prepared to document the project objectives, define organizational relationships and responsibilities, and outline the management control systems to be employed in the management of the project. The project has adopted the strategy of deactivating the simple facilities first, to reduce the scope of the project and to gain experience before addressing more difficult facilities. A decision support system is being developed to identify the activities that best promote the project mission and result in the largest cost savings. This work plan will be reviewed and revised annually. Deactivation of EFDP Facilities was initiated in FY 1994 and will be completed in FY 2000. The schedule for deactivation of facilities is shown. The total cost of the project is estimated to be $51M. The costs are summarized. Upon completion of deactivation, annual S and M costs of these facilities will be reduced from the current level of $5M per year to less than $1M per year.

  20. Technology study of Gunite tank sludge mobilization at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    DeVore, J.R.; Herrick, T.J.; Lott, K.E.

    1994-12-01

    The Oak Ridge National Laboratory (ORNL) Gunite Tank Sludge Mobilization Technology Study was initiated to support the Gunite Tank Treatability Study effort. The technology study surveyed the methods and technologies available for tank cleaning and sludge mobilization in a radioactive environment. Technologies were identified and considered for applicability to the Gunite and Associated Tanks (GAAT) problems. These were then either accepted for further study or rejected as not applicable. Technologies deemed applicable to the GAAT sludge removal project were grouped for evaluation according to (1) deployment method, (2) types of remotely operated end effector equipment applicable to removal of sludge, (3) methods for removing wastes from the tanks, and (4) methods for concrete removal. There were three major groups of deployment technologies: ``past practice`` technologies, mechanical arm-based technologies, and vehicle-based technologies. The different technologies were then combined into logical sequences of deployment platform, problem, end effector, conveyance, post-removal treatment required (if any), and disposition of the waste. Many waste removal options are available, but the best technology in one set of circumstances at one site might not be the best type to use at a different site. No single technology is capable of treating the entire spectrum of wastes that will be encountered in GAAT. None of the systems used in other industries appears to be suitable, primarily because of the nature of the sludges in the GAAT Operable Unit (OU), their radiation levels, and tank geometries. Other commercial technologies were investigated but rejected because the authors did not believe them to be applicable.

  1. Level 3 baseline risk evaluation for Building 3506 at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Golden, K.M.; Robers, S.K.; Cretella, F.M.

    1994-12-01

    This report presents the results of the Level 3 Baseline Risk Evaluation (BRE) performed on Building 3506 located at the Oak Ridge National Laboratory (ORNL). This BRE is intended to provide an analysis of the potential for adverse health effects (current or future) posed by contaminants at the facility. The decision was made to conduct a Level 3 (least rigorous) BRE because only residual contamination exists in the building. Future plans for the facility (demolition) also preclude a rigorous analysis. Site characterization activities for Building 3506 were conducted in fall of 1993. Concrete core samples were taken from the floors and walls of both the cell and the east gallery. These cores were analyzed for radionuclides and organic and inorganic chemicals. Smear samples and direct radiation measurements were also collected. Sediment exists on the floor of the cell and was also analyzed. To adequately characterize the risks posed by the facility, receptors for both current and potential future land uses were evaluated. For the current land use conditions, two receptors were evaluated. The first receptor is a hypothetical maintenance worker who spends 250 days (8 hours/day) for 25 years working in the facility. The remaining receptor evaluated is a hypothetical S and M worker who spends 2 days (8 hours/day) per year for 25 years working within the facility. This particular receptor best exemplifies the current worker scenario for the facility. The two current exposure scenarios and parameters of exposure (e.g., inhalation and ingestion rates) have been developed to provide a conservative (i.e. health protective) estimate of potential exposure.

  2. Robotic system for decommissioning the Gunite tanks at Oak Ridge National Laboratory, Oak Ridge, Tennessee

    SciTech Connect

    Chesser, J.B.; Evans, J.H.; Norman, R.E.; Peishel, F.L.; Ruppel, F.R.

    1992-12-31

    Robotic systems and equipment to facilitate removal of the contents of the Oak Ridge National Laboratory (ORNL) Gunite Waste Tanks as well as the tanks themselves are one of several options being considered for this site. The technology described consists of proven remote systems and equipment or remote adaptations of proven industrial concepts. The proposed robotic system would be housed in a portable containment structure, fabricated from steel plate, and reinforced with structural shapes. The structure would be cylindrical and have a domed head. The containment structure would be sized to cover one tank. The tanks are in two sizes: 60 ft and 35 ft diameters. The structures would be supported on driven steel piles and would have an earthen berm around the base to enhance the effectiveness of the containment. Internal to the containment structure, a polar crane bridge equipped with a pair of trolley-mounted telescoping masts would be utilized to support and manipulate the systems, tools, etc., which would perform the individual tasks. The bridge and mast control system and the manipulator control system would provide both teleoperated and robotic modes to support either manual or preprogrammed operations. Equipment mounted at the end of the mast would include servomanipulators, water jet cutter, or a clam shell bucket. The mast would feature an interface plate allowing remote changeout of most mounted equipment. The operating system would be required to have the capability to decontaminate the dome and its equipment to the degree necessary to allow it to be relocated. Viewing would be provided by commercial closed-circuit TV (CCTV). It is believed that the systems described herein represent a feasible approach to removing the contents from the ORNL gunite tanks and implementing remediation of the site.

  3. Red - Take a Closer Look

    PubMed Central

    Buechner, Vanessa L.; Maier, Markus A.; Lichtenfeld, Stephanie; Schwarz, Sascha

    2014-01-01

    Color research has shown that red is associated with avoidance of threat (e.g., failure) or approach of reward (e.g., mating) depending on the context in which it is perceived. In the present study we explored one central cognitive process that might be involved in the context dependency of red associations. According to our theory, red is supposed to highlight the relevance (importance) of a goal-related stimulus and correspondingly intensifies the perceivers’ attentional reaction to it. Angry and happy human compared to non-human facial expressions were used as goal-relevant stimuli. The data indicate that the color red leads to enhanced attentional engagement to angry and happy human facial expressions (compared to neutral ones) - the use of non-human facial expressions does not bias attention. The results are discussed with regard to the idea that red induced attentional biases might explain the red-context effects on motivation. PMID:25254380

  4. Seeing red on the road.

    PubMed

    Díaz-Romnán, Amparo; Megías, Alberto; Díaz-Piedra, Carolina; Catena, Andrés; Di Stasi, Leandro L

    2015-01-01

    Human and animal research has found that red perception is associated with specific behavioral reactions, generally characterized by intense responses. Here, we explored whether red cars are perceived as more dangerous than other colored cars. One hundred Spanish drivers examined several road scenarios which involved hazardous cars with different colors: red, green, yellow, black, gray, and white. Driver's behavior (response time and probability of braking) and the perceived level of risk for each scenario were analyzed. Although car color affected participants' response times, contrary to expectations, red cars did not elicit faster responses or higher perceived levels of risk. PMID:26489219

  5. Red cell aging in vivo

    PubMed Central

    Ganzoni, A. M.; Oakes, R.; Hillman, R. S.

    1971-01-01

    Previous studies of red cell structure and metabolism during the aging process have relied upon in vitro techniques of cell separation into various age populations. Probably the most common approach is to isolate the older red cells with the assumption that they are more dense. This may lead to a number of inconsistencies in observations, and may certainly raise questions about possible cell changes secondary to manipulative procedures. For this reason, an experimental system was devised where a normal red cell population could be studied, while aging, in an in vivo environment. The initial red cell mass of a large number of inbred rats was transferred repeatedly into an ever smaller number of animals, making it possible to follow an aging population of red cells up to 48 days while preventing contamination with newly produced cells by suppression of erythropoiesis with transfusion-induced polycythemia. During this period, samples of progressively older red cells could be obtained for measurements of red cell constant. It was noted that the normal rat red cell undergoes both volume reduction and significant hemoglobin content loss with aging. In addition, the hemoglobin concentration within the cell demonstrated an early rise after a return to nearly normal values. These findings are noteworthy in that they help to explain the characteristics of life-spans of cohort labeled red cell populations in small animals, and provide a possible example of a cell's remodeling process within the spleen. PMID:5090053

  6. Native Grass Community Management Plan for the Oak Ridge Reservation

    SciTech Connect

    Ryon, Michael G; Parr, Patricia Dreyer; Cohen, Kari

    2007-06-01

    Land managers at the Department of Energy's Oak Ridge National Laboratory in East Tennessee are restoring native warm-season grasses and wildflowers to various sites across the Oak Ridge Reservation (ORR). Some of the numerous benefits to planting native grasses and forbs include improved habitat quality for wildlife, improved aesthetic values, lower long-term maintenance costs, and compliance with Executive Order 13112 (Clinton 1999). Challenges to restoring native plants on the ORR include the need to gain experience in establishing and maintaining these communities and the potentially greater up-front costs of getting native grasses established. The goals of the native grass program are generally outlined on a fiscal-year basis. An overview of some of the issues associated with the successful and cost-effective establishment and maintenance of native grass and wildflower stands on the ORR is presented in this report.

  7. Oak Ridge K-25 Site Technology Logic Diagram

    SciTech Connect

    Fellows, R.L.

    1993-02-26

    The Oak Ridge K-25 Technology Logic Diagram (TLD), a decision support tool for the K-25 Site, was developed to provide a planning document that relates environmental restoration and waste management problems at the Oak Ridge K-25 Site to potential technologies that can remediate these problems. The TLD technique identifies the research necessary to develop these technologies to a state that allows for technology transfer and application to waste management, remedial action, and decontamination and decommissioning activities. The TLD consists of four separate volumes-Vol. 1, Vol. 2, Vol. 3A, and Vol. 3B. Volume 1 provides introductory and overview information about the TLD. Volume 2 contains logic diagrams. Volume 3 has been divided into two separate volumes to facilitate handling and use. This report is part A of Volume 3 concerning characterization, decontamination, and dismantlement.

  8. Oak Ridge K-25 Site Technology Logic Diagram

    SciTech Connect

    Fellows, R.L.

    1993-02-26

    The Oak Ridge K-25 Technology Logic Diagram (TLD), a decision support tool for the K-25 Site, was developed to provide a planning document that relates envirorunental restoration and waste management problems at the Oak Ridge K-25 Site to potential technologies that can remediate these problems. The TLD technique identifies the research necessary to develop these technologies to a state that allows for technology transfer and application to waste management, remedial action, and decontamination and decommissioning activities. The TLD consists of four separate volumes-Vol. 1, Vol. 2, Vol. 3A, and Vol. 3B. Volume 1 provides introductory and overview information about the TLD. This volume, Volume 2, contains logic diagrams with an index. Volume 3 has been divided into two separate volumes to facilitate handling and use.

  9. Tiger Team Assessment of the Oak Ridge K-25 Site

    SciTech Connect

    Not Available

    1991-12-01

    The Office of Special Projects in the Office of the Assistant Secretary for Environment, Safety, and Health (EH) has the responsibility to conduct Tiger Team Assessments for the Secretary of Energy. This report documents the Tiger Team Assessment of the Oak Ridge K-25 Site (K-25 Site), Oak Ridge, Tennessee. The purpose of the Assessment is to provide the Secretary of Energy with concise information on the: current ES&H compliance status of the Site and the vulnerabilities associated with that compliance status; root causes for noncompliance; adequacy of DOE and site contractor ES&H management programs; adequacy of response actions developed to address identified problem areas; and adequacy of ES&H self-assessments and the institutionalization of the self-assessment process at the K-25 Site.

  10. Tiger Team Assessment of the Oak Ridge K-25 Site

    SciTech Connect

    Not Available

    1991-12-01

    The Office of Special Projects in the Office of the Assistant Secretary for Environment, Safety, and Health (EH) has the responsibility to conduct Tiger Team Assessments for the Secretary of Energy. This report documents the Tiger Team Assessment of the Oak Ridge K-25 Site (K-25 Site), Oak Ridge, Tennessee. The purpose of the Assessment is to provide the Secretary of Energy with concise information on the: current ES H compliance status of the Site and the vulnerabilities associated with that compliance status; root causes for noncompliance; adequacy of DOE and site contractor ES H management programs; adequacy of response actions developed to address identified problem areas; and adequacy of ES H self-assessments and the institutionalization of the self-assessment process at the K-25 Site.

  11. Oak Ridge Environmental Information System (OREIS) Enhancements - 13109

    SciTech Connect

    Halsey, Patricia J.; Salpas, Peter A.; Clark, Phillip A.; Lewis, Larry; Tharpe, Deidre

    2013-07-01

    Significant cleanup has been accomplished on the Oak Ridge (OR) site since it was placed on the National Priorities List (NPL) in 1989, and a final evaluation of Zone 1 at the East Tennessee Technology Park (ETTP) under the Comprehensive Environmental Response, Compensation, and Liability Act of 1988 (CERCLA) has been initiated. The Oak Ridge Environmental Information System (OREIS) is the database for storing OR site environmental characterization and monitoring data. Consideration of a final decision under CERCLA prompted several enhancements to OREIS that were designed to provide future users a clear picture of remediation progression across the OR site. The enhancements to OREIS are ongoing and fall into four categories: Geographic Information System Interface; Document Association; Remediation Status; Geo-spatial Data (authors)

  12. Status report: A hydrologic framework for the Oak Ridge Reservation

    SciTech Connect

    Solomon, D.K.; Toran, L.E.; Dreier, R.B.; Moore, G.K.; McMaster, W.M.

    1992-05-01

    This first status report on the Hydrologic Studies Task of the Oak Ridge Reservation Hydrology and Geology Study (ORRHAGS) revises earlier concepts of subsurface hydrology and hydrogeochemistry of the ORR. A new classification of hydrogeologic units is given, as well as new interpretations of the gydrogeologic properties and processes that influence contaminant migration. The conceptual hydrologic framework introduced in this report is based primarily on reinterpretations of data acquired during earlier hydrologic investigations of waste areas at and near the three US Department of Energy Oak Ridge (DOE-OR) plant facilities. In addition to describing and interpreting the properties and processes of the groundwater systems as they are presently understood, this report describes surface water-subsurface water relations, influences on contaminant migration,and implications to environmental restoration, environmental monitoring, and waste management.

  13. Forecasting contaminant concentrations: Spills in the White Oak Creek Basin

    SciTech Connect

    Borders, D.M.; Hyndman, D.W.; Huff, D.D.

    1987-01-01

    The Streamflow Synthesis and Reservoir Regulation (SSARR) model has been installed and sufficiently calibrated for use in managing accidental release of contaminants in surface waters of the White Oak Creek (WOC) watershed at ORNL. The model employs existing watershed conditions, hydrologic parameters representing basin response to precipitation, and a Quantitative Precipitation Forecast (QPF) to predict variable flow conditions throughout the basin. Natural runoff from each of the hydrologically distinct subbasins is simulated and added to specified plant and process water discharges. The resulting flows are then routed through stream reaches and eventually to White Oak Lake (WOL), which is the outlet from the WOC drainage basin. In addition, the SSARR model is being used to simulate change in storage volumes and pool levels in WOL, and most recently, routing characteristics of contaminant spills through WOC and WOL. 10 figs.

  14. Environmental Monitoring Plan for the Oak Ridge Reservation, 2012

    SciTech Connect

    Thompson, Sharon D.

    2012-10-01

    The purpose of Oak Ridge Reservation (ORR) environmental surveillance is to characterize radiological and nonradiological conditions of the off-site environs and estimate public doses related to these conditions, confirm estimations of public dose based on effluent monitoring data, and, where appropriate, provide supplemental data to support compliance monitoring for applicable environmental regulations. This environmental monitoring plan (EMP) is intended to document the rationale, frequency, parameters, and analytical methods for the ORR environmental surveillance program and provides information on ORR site characteristics, environmental pathways, dose assessment methods, and quality management. ORR-wide environmental monitoring activities include a variety of media including air, surface water, vegetation, biota, and wildlife. In addition to these activities, site-specific effluent, groundwater, and best management monitoring programs are conducted at the Oak Ridge National Laboratory (ORNL), the Y-12 National Security Complex (Y-12), and the East Tennessee Technology Park (ETTP). This is revision 5.

  15. Oak Ridge Reservation annual site environmental report summary for 1995

    SciTech Connect

    1996-12-01

    The US Department of Energy (DOE) requires an annual site environmental report from each of the sites operating under its authority. The reports present the results from the various environmental monitoring and surveillance programs carried out during the year. In addition to meeting the DOE requirement, the reports also document compliance with various state and federal laws and regulations. This report was published to fulfill those requirements for the Oak Ridge Reservation (ORR) for calendar year 1995. The report is based on thousands of environmental samples collected on and around the ORR and analyzed during the year. The data on which the report is based are published in Environmental Monitoring and Surveillance on the Oak Ridge Reservation: 1995 Data (ES/ESH-71). Both documents are highly detailed. This summary report is meant for readers who are interested in the monitoring results but who do not need to review the details.

  16. Blue protein with red fluorescence

    PubMed Central

    Ghosh, Swagatha; Yu, Chi-Li; Ferraro, Daniel J.; Sudha, Sai; Pal, Samir Kumar; Schaefer, Wayne F.; Gibson, David T.; Ramaswamy, S.

    2016-01-01

    The walleye (Sander vitreus) is a golden yellow fish that inhabits the Northern American lakes. The recent sightings of the blue walleye and the correlation of its sighting to possible increased UV radiation have been proposed earlier. The underlying molecular basis of its adaptation to increased UV radiation is the presence of a protein (Sandercyanin)–ligand complex in the mucus of walleyes. Degradation of heme by UV radiation results in the formation of Biliverdin IXα (BLA), the chromophore bound to Sandercyanin. We show that Sandercyanin is a monomeric protein that forms stable homotetramers on addition of BLA to the protein. A structure of the Sandercyanin–BLA complex, purified from the fish mucus, reveals a glycosylated protein with a lipocalin fold. This protein–ligand complex absorbs light in the UV region (λmax of 375 nm) and upon excitation at this wavelength emits in the red region (λmax of 675 nm). Unlike all other known biliverdin-bound fluorescent proteins, the chromophore is noncovalently bound to the protein. We provide here a molecular rationale for the observed spectral properties of Sandercyanin. PMID:27688756

  17. Oak Ridge Reservation annual site environmental report for 2008

    SciTech Connect

    none,

    2009-09-01

    The Oak Ridge Reservation (ORR) consists of three major government-owned, contractor-operated facilities: the Y-12 National Security Complex, Oak Ridge National Laboratory, and East Tennessee Technology Park. The ORR was established in the early 1940s as part of the Manhattan Project, a secret undertaking that produced materials for the first atomic bombs. The reservation’s role has evolved over the years, and it continues to adapt to meet the changing defense, energy, and research needs of the United States. Both the work carried out for the war effort and subsequent research, development, and production activities have involved, and continue to involve, the use of radiological and hazardous materials. The Oak Ridge Reservation Annual Site Environmental Report and supporting data are available at http://www.ornl.gov/sci/env_rpt or from the project director. This document is prepared annually to summarize environmental activities, primarily environmental monitoring activities, on the Oak Ridge Reservation (ORR) and within the ORR surroundings. The document fulfills the requirement of Department of Energy (DOE) Order 231.1A, Environment, Safety and Health Reporting, for an annual summary of environmental data to characterize environmental performance. The environmental monitoring criteria are described in DOE Order 450.1A, Environmental Protection Program. The results summarized in this report are based on data collected prior to and through 2008. This report is not intended to provide the results of all sampling on the ORR. Additional data collected for other site and regulatory purposes, such as environmental restoration/remedial investigation reports, waste management characterization sampling data, and environmental permit compliance data, are presented in other documents that have been prepared in accordance with applicable DOE guidance and/or laws and are referenced herein as appropriate. Corrections to the report for the previous year are found in Appendix

  18. 7. Julia Steele House, interior view detail of oak mantel ...

    Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

    7. Julia Steele House, interior view detail of oak mantel in front left (south) parlor. Note Corinthian column supporting over mantle. Beveled mirror and capital of column below. To left of mantle is pocket door in north wall of parlor. - Julia Steele House, 5875 Paris Road (US Highway 27/68); 1 1/5 miles north of Bourbon County line, Paris, Bourbon County, KY

  19. Public involvement plan for the Oak Ridge Reservation

    SciTech Connect

    1996-06-01

    This Public Information Plan is a user`s guide for getting involved in US Department of Energy environmental decisions in Oak Ridge, Tennessee. It outlines the many ways the public can help DOE find solutions to its environmental challenges. The plan focuses on DOE`s Environmental Management public involvement activities. Environmental Management is composed of the following programs: environmental restoration, technology development and waste management.

  20. Oak Ridge National Laboratory Review. Volume 25, No. 1, 1992

    SciTech Connect

    Krause, C.; Pearce, J.; Zucker, A.

    1992-10-01

    This report presents brief descriptions of the following programs at Oak Ridge National Laboratory: The effects of pollution and climate change on forests; automation to improve the safety and efficiency of rearming battle tanks; new technologies for DNA sequencing; ORNL probes the human genome; ORNL as a supercomputer research center; paving the way to superconcrete made with polystyrene; a new look at supercritical water used in waste treatment; and small mammals as environmental monitors.