Sample records for reduced dimensionality models

1. A dimensionality reducing model for distributed filtering.

NASA Technical Reports Server (NTRS)

Angel, E.; Jain, A. K.

1973-01-01

An approach is made to filtering of two-dimensional steady-state problems based on the notion of nearest neighbor interaction, i.e., at a given point in the spatial grid, the value at the variable of interest can be assumed to depend only on the values at adjacent grid points. It is shown that for linear steady-state problems significant dimensionality reductions can be accomplished. It was possible to achieve the desired results using a small amount of computer time and without getting into stability difficulties.

2. Rigorous joining of advanced reduced-dimensional beam models to three-dimensional finite element models

Song, Huimin

In the aerospace and automotive industries, many finite element analyses use lower-dimensional finite elements such as beams, plates and shells, to simplify the modeling. These simplified models can greatly reduce the computation time and cost; however, reduced-dimensional models may introduce inaccuracies, particularly near boundaries and near portions of the structure where reduced-dimensional models may not apply. Another factor in creation of such models is that beam-like structures frequently have complex geometry, boundaries and loading conditions, which may make them unsuitable for modeling with single type of element. The goal of this dissertation is to develop a method that can accurately and efficiently capture the response of a structure by rigorous combination of a reduced-dimensional beam finite element model with a model based on full two-dimensional (2D) or three-dimensional (3D) finite elements. The first chapter of the thesis gives the background of the present work and some related previous work. The second chapter is focused on formulating a system of equations that govern the joining of a 2D model with a beam model for planar deformation. The essential aspect of this formulation is to find the transformation matrices to achieve deflection and load continuity on the interface. Three approaches are provided to obtain the transformation matrices. An example based on joining a beam to a 2D finite element model is examined, and the accuracy of the analysis is studied by comparing joint results with the full 2D analysis. The third chapter is focused on formulating the system of equations for joining a beam to a 3D finite element model for static and free-vibration problems. The transition between the 3D elements and beam elements is achieved by use of the stress recovery technique of the variational-asymptotic method as implemented in VABS (the Variational Asymptotic Beam Section analysis). The formulations for an interface transformation matrix and

3. A Reduced Order, One Dimensional Model of Joint Response

SciTech Connect

DOHNER,JEFFREY L.

2000-11-06

As a joint is loaded, the tangent stiffness of the joint reduces due to slip at interfaces. This stiffness reduction continues until the direction of the applied load is reversed or the total interface slips. Total interface slippage in joints is called macro-slip. For joints not undergoing macro-slip, when load reversal occurs the tangent stiffness immediately rebounds to its maximum value. This occurs due to stiction effects at the interface. Thus, for periodic loads, a softening and rebound hardening cycle is produced which defines a hysteretic, energy absorbing trajectory. For many jointed sub-structures, this hysteretic trajectory can be approximated using simple polynomial representations. This allows for complex joint substructures to be represented using simple non-linear models. In this paper a simple one dimensional model is discussed.

4. SCALING ANALYSIS OF REPOSITORY HEAT LOAD FOR REDUCED DIMENSIONALITY MODELS

SciTech Connect

MICHAEL T. ITAMUA AND CLIFFORD K. HO

1998-06-04

The thermal energy released from the waste packages emplaced in the potential Yucca Mountain repository is expected to result in changes in the repository temperature, relative humidity, air mass fraction, gas flow rates, and other parameters that are important input into the models used to calculate the performance of the engineered system components. In particular, the waste package degradation models require input from thermal-hydrologic models that have higher resolution than those currently used to simulate the T/H responses at the mountain-scale. Therefore, a combination of mountain- and drift-scale T/H models is being used to generate the drift thermal-hydrologic environment.

5. Is a 3-Dimensional Stress Balance Ice-Stream Model Really Better Than a 2-Dimensional "Reduced Order" Ice-Stream Model?

Sergienko, O.; Macayeal, D. R.

2007-12-01

With growing observational awareness of numerous ice-stream processes occurring on short time and spatial scales, e.g., sub-ice-stream lake volume changes and grounding-line sediment wedge build-up, the question of how well models based on "reduced-order" dynamics can simulate ice-stream behavior becomes paramount. Reduced-order models of ice-streams are typically 2-dimensional, and capture only the largest-magnitude terms in the stress tensor (with other terms being constrained by various assumptions). In predicting the overall magnitude and large-scale pattern of ice-stream flow, the reduced-order models appear to be adequate. Efforts underway in the Glaciological Community to create 3-dimensional models of the "full" ice-stream stress balance, which relax the assumptions associated with reduced-order models, suggest that a cost/benefit analysis should be done to determine how likely these efforts will be fruitful. To assess the overall benefits of full 3-dimensional models in relation to the simpler 2-dimensional counterparts, we present model solutions of the full Stokes equations for ice-stream flow over a variety of basal perturbations (e.g., a sticky spot, a subglacial lake, a grounding line). We also present the solutions derived from reduced 2-dimensional models, and compare the two solutions to estimate effects of simplifications and neglected terms, as well as to advise on what circumstances 3-dimensional models are preferable to 2-dimensional models.

6. A reduced-order model from high-dimensional frictional hysteresis.

PubMed

Biswas, Saurabh; Chatterjee, Anindya

2014-06-08

Hysteresis in material behaviour includes both signum nonlinearities as well as high dimensionality. Available models for component-level hysteretic behaviour are empirical. Here, we derive a low-order model for rate-independent hysteresis from a high-dimensional massless frictional system. The original system, being given in terms of signs of velocities, is first solved incrementally using a linear complementarity problem formulation. From this numerical solution, to develop a reduced-order model, basis vectors are chosen using the singular value decomposition. The slip direction in generalized coordinates is identified as the minimizer of a dissipation-related function. That function includes terms for frictional dissipation through signum nonlinearities at many friction sites. Luckily, it allows a convenient analytical approximation. Upon solution of the approximated minimization problem, the slip direction is found. A final evolution equation for a few states is then obtained that gives a good match with the full solution. The model obtained here may lead to new insights into hysteresis as well as better empirical modelling thereof.

7. A reduced-order model from high-dimensional frictional hysteresis

PubMed Central

Biswas, Saurabh; Chatterjee, Anindya

2014-01-01

Hysteresis in material behaviour includes both signum nonlinearities as well as high dimensionality. Available models for component-level hysteretic behaviour are empirical. Here, we derive a low-order model for rate-independent hysteresis from a high-dimensional massless frictional system. The original system, being given in terms of signs of velocities, is first solved incrementally using a linear complementarity problem formulation. From this numerical solution, to develop a reduced-order model, basis vectors are chosen using the singular value decomposition. The slip direction in generalized coordinates is identified as the minimizer of a dissipation-related function. That function includes terms for frictional dissipation through signum nonlinearities at many friction sites. Luckily, it allows a convenient analytical approximation. Upon solution of the approximated minimization problem, the slip direction is found. A final evolution equation for a few states is then obtained that gives a good match with the full solution. The model obtained here may lead to new insights into hysteresis as well as better empirical modelling thereof. PMID:24910522

8. Forward Modeling of Reduced Power Spectra from Three-dimensional k-space

von Papen, Michael; Saur, Joachim

2015-06-01

We present results from a numerical forward model to evaluate one-dimensional reduced power spectral densities (PSDs) from arbitrary energy distributions in {\\boldsymbol{k}} -space. In this model, we can separately calculate the diagonal elements of the spectral tensor for incompressible axisymmetric turbulence with vanishing helicity. Given a critically balanced turbulent cascade with {{k}\\parallel }∼ k\\bot α and α \\lt 1, we explore the implications on the reduced PSD as a function of frequency. The spectra are obtained under the assumption of Taylor’s hypothesis. We further investigate the functional dependence of the spectral index κ on the field-to-flow angle θ between plasma flow and background magnetic field from MHD to electron kinetic scales. We show that critically balanced turbulence asymptotically develops toward θ-independent spectra with a slope corresponding to the perpendicular cascade. This occurs at a transition frequency {{f}2D}(L,α ,θ ), which is analytically estimated and depends on outer scale L, critical balance exponent α, and field-to-flow angle θ. We discuss anisotropic damping terms acting on the {\\boldsymbol{k}} -space distribution of energy and their effects on the PSD. Further, we show that the spectral anisotropies κ (θ ) as found by Horbury et al. and Chen et al. in the solar wind are in accordance with a damped critically balanced cascade of kinetic Alfvén waves. We also model power spectra obtained by Papen et al. in Saturn’s plasma sheet and find that the change of spectral indices inside 9 {{R}s} can be explained by damping on electron scales.

9. Experimental validation of a three-dimensional reduced-order continuum model of phonation

PubMed Central

2016-01-01

Due to the complex nature of the phonation process, a one-dimensional (1D) glottal flow description is often used in current phonation models. Although widely used in voice research, these 1D flow-based phonation models have not been rigorously validated against experiments. In this study, a 1D glottal flow model is coupled with a three-dimensional nonlinear continuum model of the vocal fold and its predictions are compared to physical model experiments. The results show that the 1D flow-based model is able to predict the phonation threshold pressure and onset frequency within reasonable accuracy and to reproduce major vibratory features observed in the experiments. PMID:27586776

10. Reduced-order modeling for rotating rotor-bearing systems with cracked impellers using three-dimensional finite element models

Wang, Shuai; Wang, Yu; Zi, Yanyang; Li, Bing; He, Zhengjia

2015-10-01

A novel reduced-order modeling method is presented in this paper for dynamics analysis of rotating impeller-shaft-bearing assembly with cracked impellers. Based on three-dimensional finite element model, the complex component mode synthesis (CMS) method is employed to generate an efficient reduced-order model (ROM) for studying the effects of crack on the global vibration of the rotating assembly. First, a modeling framework for impeller-shaft-bearing systems in rotating frame is presented. Rotational effects, including Coriolis matrix and centrifugal softening, have been taken into account. Then, the governing equation of motion of the damped gyroscopic system is reduced by the complex CMS method. Finally, the obtained ROM is employed to study the effects of crack on assembly's vibration. During the steady-state response analysis, external excitations on the impeller due to rotor-stator interactions have been taken into account, which was however neglected in previous investigations on rotordynamics. Numerical results show that the lower-order eigenvalues and the unbalance response of the assembly are not sensitive to the local crack on impeller. Nevertheless, the flexible coupling between impeller and shaft becomes more complex when the air flow-induced excitations are considered. Under EO1 traveling wave excitations, a crack leads to slight changes in the assembly's response. In contrast, the effect of crack becomes significant when the assembly is excited by EO2 and higher EO excitations. Moreover, the nonlinear crack breathing effects affect the assembly's response obviously. Finally, a potential technique for detecting the crack on impeller during operation is discussed.

11. CONDENSED MATTER: STRUCTURAL, MECHANICAL, AND THERMAL PROPERTIES: Reduced Fidelity Susceptibility in One-Dimensional Transverse Field Ising Model

Ma, Jian; Xu, Lei; Wang, Xiao-Guang

2010-01-01

We study critical behaviors of the reduced fidelity susceptibility for two neighboring sites in the one-dimensional transverse field Ising model. It is found that the divergent behaviors of the susceptibility take the form of square of logarithm, in contrast with the global ground-state fidelity susceptibility which is power divergence. In order to perform a scaling analysis, we take the square root of the susceptibility and determine the scaling exponent analytically and the result is further confirmed by numerical calculations.

12. Low-dimensional reduced-order models for statistical response and uncertainty quantification: Barotropic turbulence with topography

Qi, Di; Majda, Andrew J.

2017-03-01

A low-dimensional reduced-order statistical closure model is developed for quantifying the uncertainty to changes in forcing in a barotropic turbulent system with topography involving interactions between small-scale motions and a large-scale mean flow. Imperfect model sensitivity is improved through a recent mathematical strategy for calibrating model errors in a training phase, where information theory and linear statistical response theory are combined in a systematic fashion to achieve the optimal model parameters. Statistical theories about a Gaussian invariant measure and the exact statistical energy equations are also developed for the truncated barotropic equations that can be used to improve the imperfect model prediction skill. A stringent paradigm model of 57 degrees of freedom is used to display the feasibility of the reduced-order methods. This simple model creates large-scale zonal mean flow shifting directions from westward to eastward jets with an abrupt change in amplitude when perturbations are applied, and prototype blocked and unblocked patterns can be generated in this simple model similar to the real natural system. Principal statistical responses in mean and variance can be captured by the reduced-order models with desirable accuracy and efficiency with only 3 resolved modes. An even more challenging regime with non-Gaussian equilibrium statistics using the fluctuation equations is also tested in the reduced-order models with accurate prediction using the first 5 resolved modes. These reduced-order models also show potential for uncertainty quantification and prediction in more complex realistic geophysical turbulent dynamical systems.

13. Three dimensional simulations of plasma filaments in the scrape off layer: A comparison with models of reduced dimensionality

Easy, L.; Militello, F.; Omotani, J.; Dudson, B.; Havlíčková, E.; Tamain, P.; Naulin, V.; Nielsen, A. H.

2014-12-01

This paper presents simulations of isolated 3D filaments in a slab geometry obtained using a newly developed 3D reduced fluid code, written using the BOUT++ framework. First, systematic scans were performed to investigate how the dynamics of a filament are affected by its amplitude, perpendicular size, and parallel extent. The perpendicular size of the filament was found to have a strong influence on its motions, as it determined the relative importance of parallel currents to polarization and viscous currents, whilst drift-wave instabilities were observed if the initial amplitude of the blob was increased sufficiently. Next, the 3D simulations were compared to 2D simulations using different parallel closures; namely, the sheath dissipation closure, which neglects parallel gradients, and the vorticity advection closure, which neglects the influence of parallel currents. The vorticity advection closure was found to not replicate the 3D perpendicular dynamics and overestimated the initial radial acceleration of all the filaments studied. In contrast, a more satisfactory comparison with the sheath dissipation closure was obtained, even in the presence of significant parallel gradients, where the closure is no longer valid. Specifically, it captured the contrasting dynamics of filaments with different perpendicular sizes that were observed in the 3D simulations which the vorticity advection closure failed to replicate. However, neither closure successfully replicated the Boltzmann spinning effects nor the associated poloidal drift of the blob that was observed in the 3D simulations. Although the sheath dissipation closure was concluded to be more successful in replicating the 3D dynamics, it is emphasized that the vorticity advection closure may still be relevant for situations where the parallel current is inhibited from closing through the sheath due to effects such as strong magnetic shear around X points or increased resistivity near the targets.

14. Coupled and reduced dimensional modeling of respiratory mechanics during spontaneous breathing.

PubMed

Ismail, M; Comerford, A; Wall, W A

2013-11-01

In this paper, we develop a total lung model based on a tree of 0D airway and acinar models for studying respiratory mechanics during spontaneous breathing. This model utilizes both computer tomography-based geometries and artificially generated lobe-filling airway trees to model the entire conducting region of the lung. Beyond the conducting airways, we develop an acinar model, which takes into account the alveolar tissue resistance, compliance, and the intrapleural pressure. With this methodology, we compare four different 0D models of airway mechanics and determine the best model based on a comparison with a 3D-0D coupled model of the conducting airways; this methodology is possible because the majority of airway resistance is confined to the lower generations, that is, the trachea and the first few bronchial generations. As an example application of the model, we simulate the flow and pressure dynamics under spontaneous breathing conditions, that is, at flow conditions driven purely by pleural space pressure. The results show good agreement, both qualitatively and quantitatively, with reported physiological values. One of the key advantages of this model is the ability to provide insight into lung ventilation in the peripheral regions. This is often crucial because this is where information, specifically for studying diseases and gas exchange, is needed. Thus, the model can be used as a tool for better understanding local peripheral lung mechanics without excluding the upper portions of the lung. This tool will be also useful for in vitro investigations of lung mechanics in both health and disease.

15. Neurobiological Models of Two-Choice Decision Making Can Be Reduced to a One-Dimensional Nonlinear Diffusion Equation

PubMed Central

Roxin, Alex; Ledberg, Anders

2008-01-01

The response behaviors in many two-alternative choice tasks are well described by so-called sequential sampling models. In these models, the evidence for each one of the two alternatives accumulates over time until it reaches a threshold, at which point a response is made. At the neurophysiological level, single neuron data recorded while monkeys are engaged in two-alternative choice tasks are well described by winner-take-all network models in which the two choices are represented in the firing rates of separate populations of neurons. Here, we show that such nonlinear network models can generally be reduced to a one-dimensional nonlinear diffusion equation, which bears functional resemblance to standard sequential sampling models of behavior. This reduction gives the functional dependence of performance and reaction-times on external inputs in the original system, irrespective of the system details. What is more, the nonlinear diffusion equation can provide excellent fits to behavioral data from two-choice decision making tasks by varying these external inputs. This suggests that changes in behavior under various experimental conditions, e.g. changes in stimulus coherence or response deadline, are driven by internal modulation of afferent inputs to putative decision making circuits in the brain. For certain model systems one can analytically derive the nonlinear diffusion equation, thereby mapping the original system parameters onto the diffusion equation coefficients. Here, we illustrate this with three model systems including coupled rate equations and a network of spiking neurons. PMID:18369436

16. Assessment of reduced-order unscented Kalman filter for parameter identification in 1-dimensional blood flow models using experimental data.

PubMed

Caiazzo, A; Caforio, Federica; Montecinos, Gino; Muller, Lucas O; Blanco, Pablo J; Toro, Eluterio F

2016-10-25

This work presents a detailed investigation of a parameter estimation approach on the basis of the reduced-order unscented Kalman filter (ROUKF) in the context of 1-dimensional blood flow models. In particular, the main aims of this study are (1) to investigate the effects of using real measurements versus synthetic data for the estimation procedure (i.e., numerical results of the same in silico model, perturbed with noise) and (2) to identify potential difficulties and limitations of the approach in clinically realistic applications to assess the applicability of the filter to such setups. For these purposes, the present numerical study is based on a recently published in vitro model of the arterial network, for which experimental flow and pressure measurements are available at few selected locations. To mimic clinically relevant situations, we focus on the estimation of terminal resistances and arterial wall parameters related to vessel mechanics (Young's modulus and wall thickness) using few experimental observations (at most a single pressure or flow measurement per vessel). In all cases, we first perform a theoretical identifiability analysis on the basis of the generalized sensitivity function, comparing then the results owith the ROUKF, using either synthetic or experimental data, to results obtained using reference parameters and to available measurements.

17. Testing the Palma-Clary Reduced Dimensionality Model Using Classical Mechanics on the CH4 + H → CH3 + H2 Reaction.

PubMed

Vikár, Anna; Nagy, Tibor; Lendvay, György

2016-07-14

Application of exact quantum scattering methods in theoretical reaction dynamics of bimolecular reactions is limited by the complexity of the equations of nuclear motion to be solved. Simplification is often achieved by reducing the number of degrees of freedom to be explicitly handled by freezing the less important spectator modes. The reaction cross sections obtained in reduced-dimensionality (RD) quantum scattering methods can be used in the calculation of rate coefficients, but their physical meaning is limited. The accurate test of the performance of a reduced-dimensionality method would be a comparison of the RD cross sections with those obtained in accurate full-dimensional (FD) calculations, which is not feasible because of the lack of complete full-dimensional results. However, classical mechanics allows one to perform reaction dynamics calculations using both the RD and the FD model. In this paper, an RD versus FD comparison is made for the 8-dimensional Palma-Clary model on the example of four isotopologs of the CH4 + H → CH3 + H2 reaction, which has 12 internal dimensions. In the Palma-Clary model, the only restriction is that the methyl group is confined to maintain C3v symmetry. Both RD and FD opacity and excitation functions as well as differential cross sections were calculated using the quasiclassical trajectory method. The initial reactant separation has been handled according to our one-period averaging method [ Nagy et al. J. Chem. Phys. 2016, 144, 014104 ]. The RD and FD excitation functions were found to be close to each other for some isotopologs, but in general, the RD reactivity parameters are lower than the FD reactivity parameters beyond statistical error, and for one of the isotopologs, the deviation is significant. This indicates that the goodness of RD cross sections cannot be taken for granted.

18. Hutchinson-Gilford progeria syndrome alters nuclear shape and reduces cell motility in three dimensional model substrates.

PubMed

Booth-Gauthier, Elizabeth A; Du, Vicard; Ghibaudo, Marion; Rape, Andrew D; Dahl, Kris Noel; Ladoux, Benoit

2013-03-01

Cell migration through tight interstitial spaces in three dimensional (3D) environments impacts development, wound healing and cancer metastasis and is altered by the aging process. The stiffness of the extracellular matrix (ECM) increases with aging and affects the cells and cytoskeletal processes involved in cell migration. However, the nucleus, which is the largest and densest organelle, has not been widely studied during cell migration through the ECM. Additionally, the nucleus is stiffened during the aging process through the accumulation of a mutant nucleoskeleton protein lamin A, progerin. By using microfabricated substrates to mimic the confined environment of surrounding tissues, we characterized nuclear movements and deformation during cell migration into micropillars where interspacing can be tuned to vary nuclear confinement. Cell motility decreased with decreased micropillar (μP) spacing and correlated with increased dysmorphic shapes of nuclei. We examined the effects of increased nuclear stiffness which correlates with cellular aging by studying Hutchinson-Gilford progeria syndrome cells which are known to accumulate progerin. With the expression of progerin, cells showed a threshold response to decreased μP spacing. Cells became trapped in the close spacing, possibly from visible micro-defects in the nucleoskeleton induced by cell crawling through the μP and from reduced force generation, measured independently. We suggest that ECM changes during aging could be compounded by the increasing stiffness of the nucleus and thus changes in cell migration through 3D tissues.

19. Bright solitons in a quasi-one-dimensional reduced model of a dipolar Bose-Einstein condensate with repulsive short-range interactions

Chiquillo, Emerson

2014-08-01

We study the formation and dynamics of bright solitons in a quasi-one-dimensional reduced mean-field Gross-Pitaevskii equation of a dipolar Bose-Einstein condensate with repulsive short-range interactions. The study is carried out using a variational approximation and a numerical solution. Plots of chemical potential and root mean square (rms) size of solitons are obtained for the quasi-one-dimensional model of three different dipolar condensates of 52Cr, 168Er and 164Dy atoms. The results achieved are in good agreement with those produced by the full three-dimensional mean-field model of the condensate. We also study the dynamics of the collision of a train of two solitons in the quasi-one-dimensional model of every condensate above. At small velocities (zero or close to zero) the dynamics is attractive for a phase difference δ = 0, the solitons coalesce and these oscillate, forming a bound soliton molecule. For a phase difference δ = π the effect is repulsive. At large velocities the collision is independent of the initial phase difference δ. This is quasi-elastic and the result is two quasi-solitons.

20. Ligand-Stabilized Reduced-Dimensionality Perovskites.

PubMed

Quan, Li Na; Yuan, Mingjian; Comin, Riccardo; Voznyy, Oleksandr; Beauregard, Eric M; Hoogland, Sjoerd; Buin, Andrei; Kirmani, Ahmad R; Zhao, Kui; Amassian, Aram; Kim, Dong Ha; Sargent, Edward H

2016-03-02

Metal halide perovskites have rapidly advanced thin-film photovoltaic performance; as a result, the materials' observed instabilities urgently require a solution. Using density functional theory (DFT), we show that a low energy of formation, exacerbated in the presence of humidity, explains the propensity of perovskites to decompose back into their precursors. We find, also using DFT, that intercalation of phenylethylammonium between perovskite layers introduces quantitatively appreciable van der Waals interactions. These drive an increased formation energy and should therefore improve material stability. Here we report reduced-dimensionality (quasi-2D) perovskite films that exhibit improved stability while retaining the high performance of conventional three-dimensional perovskites. Continuous tuning of the dimensionality, as assessed using photophysical studies, is achieved by the choice of stoichiometry in materials synthesis. We achieve the first certified hysteresis-free solar power conversion in a planar perovskite solar cell, obtaining a 15.3% certified PCE, and observe greatly improved performance longevity.

1. Stimuli Reduce the Dimensionality of Cortical Activity

PubMed Central

Mazzucato, Luca; Fontanini, Alfredo; La Camera, Giancarlo

2016-01-01

The activity of ensembles of simultaneously recorded neurons can be represented as a set of points in the space of firing rates. Even though the dimension of this space is equal to the ensemble size, neural activity can be effectively localized on smaller subspaces. The dimensionality of the neural space is an important determinant of the computational tasks supported by the neural activity. Here, we investigate the dimensionality of neural ensembles from the sensory cortex of alert rats during periods of ongoing (inter-trial) and stimulus-evoked activity. We find that dimensionality grows linearly with ensemble size, and grows significantly faster during ongoing activity compared to evoked activity. We explain these results using a spiking network model based on a clustered architecture. The model captures the difference in growth rate between ongoing and evoked activity and predicts a characteristic scaling with ensemble size that could be tested in high-density multi-electrode recordings. Moreover, we present a simple theory that predicts the existence of an upper bound on dimensionality. This upper bound is inversely proportional to the amount of pair-wise correlations and, compared to a homogeneous network without clusters, it is larger by a factor equal to the number of clusters. The empirical estimation of such bounds depends on the number and duration of trials and is well predicted by the theory. Together, these results provide a framework to analyze neural dimensionality in alert animals, its behavior under stimulus presentation, and its theoretical dependence on ensemble size, number of clusters, and correlations in spiking network models. PMID:26924968

2. Stimuli Reduce the Dimensionality of Cortical Activity.

PubMed

Mazzucato, Luca; Fontanini, Alfredo; La Camera, Giancarlo

2016-01-01

The activity of ensembles of simultaneously recorded neurons can be represented as a set of points in the space of firing rates. Even though the dimension of this space is equal to the ensemble size, neural activity can be effectively localized on smaller subspaces. The dimensionality of the neural space is an important determinant of the computational tasks supported by the neural activity. Here, we investigate the dimensionality of neural ensembles from the sensory cortex of alert rats during periods of ongoing (inter-trial) and stimulus-evoked activity. We find that dimensionality grows linearly with ensemble size, and grows significantly faster during ongoing activity compared to evoked activity. We explain these results using a spiking network model based on a clustered architecture. The model captures the difference in growth rate between ongoing and evoked activity and predicts a characteristic scaling with ensemble size that could be tested in high-density multi-electrode recordings. Moreover, we present a simple theory that predicts the existence of an upper bound on dimensionality. This upper bound is inversely proportional to the amount of pair-wise correlations and, compared to a homogeneous network without clusters, it is larger by a factor equal to the number of clusters. The empirical estimation of such bounds depends on the number and duration of trials and is well predicted by the theory. Together, these results provide a framework to analyze neural dimensionality in alert animals, its behavior under stimulus presentation, and its theoretical dependence on ensemble size, number of clusters, and correlations in spiking network models.

3. Do muscle synergies reduce the dimensionality of behavior?

PubMed

Kuppuswamy, Naveen; Harris, Christopher M

2014-01-01

The muscle synergy hypothesis is an archetype of the notion of Dimensionality Reduction (DR) occurring in the central nervous system due to modular organization. Toward validating this hypothesis, it is important to understand if muscle synergies can reduce the state-space dimensionality while maintaining task control. In this paper we present a scheme for investigating this reduction utilizing the temporal muscle synergy formulation. Our approach is based on the observation that constraining the control input to a weighted combination of temporal muscle synergies also constrains the dynamic behavior of a system in a trajectory-specific manner. We compute this constrained reformulation of system dynamics and then use the method of system balancing for quantifying the DR; we term this approach as Trajectory Specific Dimensionality Analysis (TSDA). We then investigate the consequence of minimization of the dimensionality for a given task. These methods are tested in simulations on a linear (tethered mass) and a non-linear (compliant kinematic chain) system. Dimensionality of various reaching trajectories is compared when using idealized temporal synergies. We show that as a consequence of this Minimum Dimensional Control (MDC) model, smooth straight-line Cartesian trajectories with bell-shaped velocity profiles emerged as the optima for the reaching task. We also investigated the effect on dimensionality due to adding via-points to a trajectory. The results indicate that a trajectory and synergy basis specific DR of behavior results from muscle synergy control. The implications of these results for the synergy hypothesis, optimal motor control, motor development, and robotics are discussed.

4. Do muscle synergies reduce the dimensionality of behavior?

PubMed Central

Kuppuswamy, Naveen; Harris, Christopher M.

2014-01-01

The muscle synergy hypothesis is an archetype of the notion of Dimensionality Reduction (DR) occurring in the central nervous system due to modular organization. Toward validating this hypothesis, it is important to understand if muscle synergies can reduce the state-space dimensionality while maintaining task control. In this paper we present a scheme for investigating this reduction utilizing the temporal muscle synergy formulation. Our approach is based on the observation that constraining the control input to a weighted combination of temporal muscle synergies also constrains the dynamic behavior of a system in a trajectory-specific manner. We compute this constrained reformulation of system dynamics and then use the method of system balancing for quantifying the DR; we term this approach as Trajectory Specific Dimensionality Analysis (TSDA). We then investigate the consequence of minimization of the dimensionality for a given task. These methods are tested in simulations on a linear (tethered mass) and a non-linear (compliant kinematic chain) system. Dimensionality of various reaching trajectories is compared when using idealized temporal synergies. We show that as a consequence of this Minimum Dimensional Control (MDC) model, smooth straight-line Cartesian trajectories with bell-shaped velocity profiles emerged as the optima for the reaching task. We also investigated the effect on dimensionality due to adding via-points to a trajectory. The results indicate that a trajectory and synergy basis specific DR of behavior results from muscle synergy control. The implications of these results for the synergy hypothesis, optimal motor control, motor development, and robotics are discussed. PMID:25002844

5. Evaluation of Floodplain Modifications to Reduce the Effect of Floods Using a Two-Dimensional Hydrodynamic Model of the Flint River at Albany, Georgia

USGS Publications Warehouse

Musser, Jonathan W.

2008-01-01

Potential flow characteristics of future flooding along a 4.8-mile reach of the Flint River in Albany, Georgia, were simulated using recent digital-elevation-model data and the U.S. Geological Survey finite-element surface-water modeling system for two-dimensional flow in the horizontal plane (FESWMS-2DH). The model was run at four water-surface altitudes at the Flint River at Albany streamgage (02352500): 181.5-foot (ft) altitude with a flow of 61,100 cubic feet per second (ft3/s), 184.5-ft altitude with a flow of 75,400 ft3/s, 187.5-ft altitude with a flow of 91,700 ft3/s, and 192.5-ft altitude with a flow of 123,000 ft3/s. The model was run to measure changes in inundated areas and water-surface altitudes for eight scenarios of possible modifications to the 4.8-mile reach on the Flint River. The eight scenarios include removing a human-made peninsula located downstream from Oglethorpe Boulevard, increasing the opening under the Oakridge Drive bridge, adding culverts to the east Oakridge Drive bridge approach, adding culverts to the east and west Oakridge Drive bridge approaches, adding an overflow across the oxbow north of Oakridge Drive, making the overflow into a channel, removing the Oakridge Drive bridge, and adding a combination of an oxbow overflow and culverts on both Oakridge Drive bridge approaches. The modeled inundation and water-surface altitude changes were mapped for use in evaluating the river modifications. The most effective scenario at reducing inundated area was the combination scenario. At the 187.5-ft altitude, the inundated area decreased from 4.24 square miles to 4.00 square miles. The remove-peninsula scenario was the least effective with a reduction in inundated area of less than 0.01 square miles. In all scenarios, the inundated area reduction increased with water-surface altitude, peaking at the 187.5-ft altitude. The inundated area reduction then decreased at the gage altitude of 192.5 ft.

6. Reduced Order Podolsky Model

Thibes, Ronaldo

2017-02-01

We perform the canonical and path integral quantizations of a lower-order derivatives model describing Podolsky's generalized electrodynamics. The physical content of the model shows an auxiliary massive vector field coupled to the usual electromagnetic field. The equivalence with Podolsky's original model is studied at classical and quantum levels. Concerning the dynamical time evolution, we obtain a theory with two first-class and two second-class constraints in phase space. We calculate explicitly the corresponding Dirac brackets involving both vector fields. We use the Senjanovic procedure to implement the second-class constraints and the Batalin-Fradkin-Vilkovisky path integral quantization scheme to deal with the symmetries generated by the first-class constraints. The physical interpretation of the results turns out to be simpler due to the reduced derivatives order permeating the equations of motion, Dirac brackets and effective action.

7. Reduced basis ANOVA methods for partial differential equations with high-dimensional random inputs

Liao, Qifeng; Lin, Guang

2016-07-01

In this paper we present a reduced basis ANOVA approach for partial deferential equations (PDEs) with random inputs. The ANOVA method combined with stochastic collocation methods provides model reduction in high-dimensional parameter space through decomposing high-dimensional inputs into unions of low-dimensional inputs. In this work, to further reduce the computational cost, we investigate spatial low-rank structures in the ANOVA-collocation method, and develop efficient spatial model reduction techniques using hierarchically generated reduced bases. We present a general mathematical framework of the methodology, validate its accuracy and demonstrate its efficiency with numerical experiments.

8. Reduced basis ANOVA methods for partial differential equations with high-dimensional random inputs

SciTech Connect

Liao, Qifeng; Lin, Guang

2016-07-15

In this paper we present a reduced basis ANOVA approach for partial deferential equations (PDEs) with random inputs. The ANOVA method combined with stochastic collocation methods provides model reduction in high-dimensional parameter space through decomposing high-dimensional inputs into unions of low-dimensional inputs. In this work, to further reduce the computational cost, we investigate spatial low-rank structures in the ANOVA-collocation method, and develop efficient spatial model reduction techniques using hierarchically generated reduced bases. We present a general mathematical framework of the methodology, validate its accuracy and demonstrate its efficiency with numerical experiments.

9. Fast two-dimensional model

NASA Technical Reports Server (NTRS)

Jackman, Charles H.; Douglass, Anne R.; Stolarski, Richard S.; Guthrie, Paul D.; Thompson, A. M.

1990-01-01

A two dimensional (altitude and latitude) model of the atmosphere is used to investigate problems relating to the variability of the dynamics and temperature of the atmosphere on the ozone distribution, solar cycle variations of atmospheric constituents, the sensitivity of model results to tropospheric trace gas sources, and assessment computations of changes in ozone related to manmade influences. In a comparison between two dimensional model results in which the odd nitrogen family was transported together and model results in which the odd nitrogen species was transported separately, it was found that the family approximations are adequate for perturbation scenario calculations.

10. Dimensionality reduction in epidemic spreading models

Frasca, M.; Rizzo, A.; Gallo, L.; Fortuna, L.; Porfiri, M.

2015-09-01

Complex dynamical systems often exhibit collective dynamics that are well described by a reduced set of key variables in a low-dimensional space. Such a low-dimensional description offers a privileged perspective to understand the system behavior across temporal and spatial scales. In this work, we propose a data-driven approach to establish low-dimensional representations of large epidemic datasets by using a dimensionality reduction algorithm based on isometric features mapping (ISOMAP). We demonstrate our approach on synthetic data for epidemic spreading in a population of mobile individuals. We find that ISOMAP is successful in embedding high-dimensional data into a low-dimensional manifold, whose topological features are associated with the epidemic outbreak. Across a range of simulation parameters and model instances, we observe that epidemic outbreaks are embedded into a family of closed curves in a three-dimensional space, in which neighboring points pertain to instants that are close in time. The orientation of each curve is unique to a specific outbreak, and the coordinates correlate with the number of infected individuals. A low-dimensional description of epidemic spreading is expected to improve our understanding of the role of individual response on the outbreak dynamics, inform the selection of meaningful global observables, and, possibly, aid in the design of control and quarantine procedures.

11. A three-dimensional ground-water-flow model modified to reduce computer-memory requirements and better simulate confining-bed and aquifer pinchouts

USGS Publications Warehouse

Leahy, P.P.

1982-01-01

The Trescott computer program for modeling groundwater flow in three dimensions has been modified to (1) treat aquifer and confining bed pinchouts more realistically and (2) reduce the computer memory requirements needed for the input data. Using the original program, simulation of aquifer systems with nonrectangular external boundaries may result in a large number of nodes that are not involved in the numerical solution of the problem, but require computer storage. (USGS)

12. System for generating two-dimensional masks from a three-dimensional model using topological analysis

DOEpatents

Schiek, Richard

2006-06-20

A method of generating two-dimensional masks from a three-dimensional model comprises providing a three-dimensional model representing a micro-electro-mechanical structure for manufacture and a description of process mask requirements, reducing the three-dimensional model to a topological description of unique cross sections, and selecting candidate masks from the unique cross sections and the cross section topology. The method further can comprise reconciling the candidate masks based on the process mask requirements description to produce two-dimensional process masks.

13. Modelling reduced sparse data

Kozera, Ryszard; Noakes, Lyle

2016-09-01

In this paper we discuss the problem of fitting to an ordered collection of points in arbitary Euclidean space called reduced data. We are not given here the corresponding interpolation knots. Instead, these are estimated by new knots upon minimizing a relevant highly nonlinear optimization scheme based on natural spline interpolation. The existence of a global minimizer (i.e. the collection of interpolation knots in ascending order) is also addressed in this paper. Finally, Leap-Frog optimization tool is used to compute these knots approximating the unknown interpolation knots. This numerical scheme is subsequently compared with the Secant Method. Two illustrative examples are given.

14. Electronic, Optical, and Thermal Properties of Reduced-Dimensional Semiconductors

Huang, Shouting

Reduced-dimensional materials have attracted tremendous attention because of their new physics and exotic properties, which are of great interests for fundamental science. More importantly, the manipulation and engineering of matter on an atomic scale yield promising applications for many fields including nanoelectronics, nanobiotechnology, environments, and renewable energy. Because of the unusual quantum confinement and enhanced surface effect of reduced-dimensional materials, traditional empirical models suffer from necessary but unreliable parameters extracted from previously-studied bulk materials. In this sense, quantitative, parameter-free approaches are highly useful for understanding properties of reduced-dimensional materials and, furthermore, predicting their novel applications. The first-principles density functional theory (DFT) is proven to be a reliable and convenient tool. In particular, recent progress in many-body perturbation theory (MBPT) makes it possible to calculate excited-state properties, e.g., quasiparticle (QP) band gap and optical excitations, by the first-principles approach based on DFT. Therefore, during my PhD study, I employed first-principles calculations based on DFT and MBPT to systematically study fundamental properties of typical reduced-dimensional semiconductors, i.e., the electronic structure, phonons, and optical excitations of core-shell nanowires (NWs) and graphene-like two-dimensional (2D) structures of current interests. First, I present first-principles studies on how to engineer band alignments of nano-sized radial heterojunctions, Si/Ge core-shell NWs. Our calculation reveals that band offsets in these one-dimensional (1D) nanostructures can be tailored by applying axial strain or varying core-shell sizes. In particular, the valence band offset can be efficiently tuned across a wide range and even be diminished via applied strain. Two mechanisms contribute to this tuning of band offsets. Furthermore, varying the

15. Sensory stimuli reduce the dimensionality of cortical activity

Mazzucato, Luca; Fontanini, Alfredo; La Camera, Giancarlo

Neural ensembles in alert animals generate complex patterns of activity. Although cortical activity unfolds in a space whose dimension is equal to the number of neurons, it is often restricted to a lower dimensional subspace. Dimensionality is the minimal number of dimensions that accurately capture neural dynamics, and may be related to the computational tasks supported by the neural circuit. Here, we investigate the dimensionality of neural ensembles from the insular cortex of alert rats during periods of ongoing' (spontaneous) and stimulus-evoked activity. We find that the dimensionality grows with ensemble size, and does so significantly faster during ongoing compared to evoked activity. We explain both results using a recurrent spiking network with clustered architecture, and obtain analytical results on the dependence of dimensionality on ensemble size, number of clusters, and pair-wise noise correlations. The theory predicts a characteristic scaling with ensemble size and the existence of an upper bound on dimensionality, which grows with the number of clusters and decreases with the amount of noise correlations. To our knowledge, this is the first mechanistic model of neural dimensionality in cortex during both spontaneous and evoked activity.

16. Determining Reduced Order Models for Optimal Stochastic Reduced Order Models

SciTech Connect

Bonney, Matthew S.; Brake, Matthew R.W.

2015-08-01

The use of parameterized reduced order models(PROMs) within the stochastic reduced order model (SROM) framework is a logical progression for both methods. In this report, five different parameterized reduced order models are selected and critiqued against the other models along with truth model for the example of the Brake-Reuss beam. The models are: a Taylor series using finite difference, a proper orthogonal decomposition of the the output, a Craig-Bampton representation of the model, a method that uses Hyper-Dual numbers to determine the sensitivities, and a Meta-Model method that uses the Hyper-Dual results and constructs a polynomial curve to better represent the output data. The methods are compared against a parameter sweep and a distribution propagation where the first four statistical moments are used as a comparison. Each method produces very accurate results with the Craig-Bampton reduction having the least accurate results. The models are also compared based on time requirements for the evaluation of each model where the Meta- Model requires the least amount of time for computation by a significant amount. Each of the five models provided accurate results in a reasonable time frame. The determination of which model to use is dependent on the availability of the high-fidelity model and how many evaluations can be performed. Analysis of the output distribution is examined by using a large Monte-Carlo simulation along with a reduced simulation using Latin Hypercube and the stochastic reduced order model sampling technique. Both techniques produced accurate results. The stochastic reduced order modeling technique produced less error when compared to an exhaustive sampling for the majority of methods.

17. Extra-dimensional models on the lattice

SciTech Connect

Knechtli, Francesco; Rinaldi, Enrico

2016-08-05

In this paper we summarize the ongoing effort to study extra-dimensional gauge theories with lattice simulations. In these models the Higgs field is identified with extra-dimensional components of the gauge field. The Higgs potential is generated by quantum corrections and is protected from divergences by the higher dimensional gauge symmetry. Dimensional reduction to four dimensions can occur through compactification or localization. Gauge-Higgs unification models are often studied using perturbation theory. Numerical lattice simulations are used to go beyond these perturbative expectations and to include nonperturbative effects. We describe the known perturbative predictions and their fate in the strongly-coupled regime for various extra-dimensional models.

18. Reduced dimensionality diatom--diatom reactive scattering: Application to a model H sub 2 +A sub 2 r arrow H+HA sub 2 reaction

SciTech Connect

Sun, Q.; Bowman, J.M. )

1990-01-15

We apply a recently formulated quantum theory of diatom--diatom reactions (Q. Sun and J. M. Bowman, Int. J. Quant. Chem., Quant. Chem. Symp. {bold 23}, 9 (1989)) to a model collinear H{sub 2}+A{sub 2}{r arrow}H+HA{sub 2} reaction, where A has the mass of a hydrogen atom. The theory assumes one diatom bond is nonreactive, and the reactive scattering Hamiltonian is written in terms of hyperspherical and cylindrical coordinates. The potential-energy surface used is the PK2 H+H{sub 2} surface augmented by a harmonic degree of freedom describing the nonreactive A{sub 2}. Details of the formulation and solution of the coupled-channel equations are given, along with convergence tests, and a discussion of the new state-to-state transition probabilities. In particular, the partial quenching of the well-known collinear H+H{sub 2} resonances is noted.

19. Model diagnostics in reduced-rank estimation

PubMed Central

Chen, Kun

2016-01-01

Reduced-rank methods are very popular in high-dimensional multivariate analysis for conducting simultaneous dimension reduction and model estimation. However, the commonly-used reduced-rank methods are not robust, as the underlying reduced-rank structure can be easily distorted by only a few data outliers. Anomalies are bound to exist in big data problems, and in some applications they themselves could be of the primary interest. While naive residual analysis is often inadequate for outlier detection due to potential masking and swamping, robust reduced-rank estimation approaches could be computationally demanding. Under Stein's unbiased risk estimation framework, we propose a set of tools, including leverage score and generalized information score, to perform model diagnostics and outlier detection in large-scale reduced-rank estimation. The leverage scores give an exact decomposition of the so-called model degrees of freedom to the observation level, which lead to exact decomposition of many commonly-used information criteria; the resulting quantities are thus named information scores of the observations. The proposed information score approach provides a principled way of combining the residuals and leverage scores for anomaly detection. Simulation studies confirm that the proposed diagnostic tools work well. A pattern recognition example with hand-writing digital images and a time series analysis example with monthly U.S. macroeconomic data further demonstrate the efficacy of the proposed approaches. PMID:28003860

20. Improving the text classification using clustering and a novel HMM to reduce the dimensionality.

PubMed

Seara Vieira, A; Borrajo, L; Iglesias, E L

2016-11-01

In text classification problems, the representation of a document has a strong impact on the performance of learning systems. The high dimensionality of the classical structured representations can lead to burdensome computations due to the great size of real-world data. Consequently, there is a need for reducing the quantity of handled information to improve the classification process. In this paper, we propose a method to reduce the dimensionality of a classical text representation based on a clustering technique to group documents, and a previously developed Hidden Markov Model to represent them. We have applied tests with the k-NN and SVM classifiers on the OHSUMED and TREC benchmark text corpora using the proposed dimensionality reduction technique. The experimental results obtained are very satisfactory compared to commonly used techniques like InfoGain and the statistical tests performed demonstrate the suitability of the proposed technique for the preprocessing step in a text classification task.

1. Sparse High Dimensional Models in Economics

PubMed Central

Fan, Jianqing; Lv, Jinchi; Qi, Lei

2010-01-01

This paper reviews the literature on sparse high dimensional models and discusses some applications in economics and finance. Recent developments of theory, methods, and implementations in penalized least squares and penalized likelihood methods are highlighted. These variable selection methods are proved to be effective in high dimensional sparse modeling. The limits of dimensionality that regularization methods can handle, the role of penalty functions, and their statistical properties are detailed. Some recent advances in ultra-high dimensional sparse modeling are also briefly discussed. PMID:22022635

2. POD/DEIM reduced-order strategies for efficient four dimensional variational data assimilation

SciTech Connect

Ştefănescu, R.; Sandu, A.; Navon, I.M.

2015-08-15

This work studies reduced order modeling (ROM) approaches to speed up the solution of variational data assimilation problems with large scale nonlinear dynamical models. It is shown that a key requirement for a successful reduced order solution is that reduced order Karush–Kuhn–Tucker conditions accurately represent their full order counterparts. In particular, accurate reduced order approximations are needed for the forward and adjoint dynamical models, as well as for the reduced gradient. New strategies to construct reduced order based are developed for proper orthogonal decomposition (POD) ROM data assimilation using both Galerkin and Petrov–Galerkin projections. For the first time POD, tensorial POD, and discrete empirical interpolation method (DEIM) are employed to develop reduced data assimilation systems for a geophysical flow model, namely, the two dimensional shallow water equations. Numerical experiments confirm the theoretical framework for Galerkin projection. In the case of Petrov–Galerkin projection, stabilization strategies must be considered for the reduced order models. The new reduced order shallow water data assimilation system provides analyses similar to those produced by the full resolution data assimilation system in one tenth of the computational time.

3. POD/DEIM reduced-order strategies for efficient four dimensional variational data assimilation

Ştefănescu, R.; Sandu, A.; Navon, I. M.

2015-08-01

This work studies reduced order modeling (ROM) approaches to speed up the solution of variational data assimilation problems with large scale nonlinear dynamical models. It is shown that a key requirement for a successful reduced order solution is that reduced order Karush-Kuhn-Tucker conditions accurately represent their full order counterparts. In particular, accurate reduced order approximations are needed for the forward and adjoint dynamical models, as well as for the reduced gradient. New strategies to construct reduced order based are developed for proper orthogonal decomposition (POD) ROM data assimilation using both Galerkin and Petrov-Galerkin projections. For the first time POD, tensorial POD, and discrete empirical interpolation method (DEIM) are employed to develop reduced data assimilation systems for a geophysical flow model, namely, the two dimensional shallow water equations. Numerical experiments confirm the theoretical framework for Galerkin projection. In the case of Petrov-Galerkin projection, stabilization strategies must be considered for the reduced order models. The new reduced order shallow water data assimilation system provides analyses similar to those produced by the full resolution data assimilation system in one tenth of the computational time.

4. Physical model of dimensional regularization

Schonfeld, Jonathan F.

2016-12-01

We explicitly construct fractals of dimension 4{-}ɛ on which dimensional regularization approximates scalar-field-only quantum-field theory amplitudes. The construction does not require fractals to be Lorentz-invariant in any sense, and we argue that there probably is no Lorentz-invariant fractal of dimension greater than 2. We derive dimensional regularization's power-law screening first for fractals obtained by removing voids from 3-dimensional Euclidean space. The derivation applies techniques from elementary dielectric theory. Surprisingly, fractal geometry by itself does not guarantee the appropriate power-law behavior; boundary conditions at fractal voids also play an important role. We then extend the derivation to 4-dimensional Minkowski space. We comment on generalization to non-scalar fields, and speculate about implications for quantum gravity.

5. Hybrid reduced order modeling for assembly calculations

DOE PAGES

Bang, Youngsuk; Abdel-Khalik, Hany S.; Jessee, Matthew A.; ...

2015-08-14

While the accuracy of assembly calculations has greatly improved due to the increase in computer power enabling more refined description of the phase space and use of more sophisticated numerical algorithms, the computational cost continues to increase which limits the full utilization of their effectiveness for routine engineering analysis. Reduced order modeling is a mathematical vehicle that scales down the dimensionality of large-scale numerical problems to enable their repeated executions on small computing environment, often available to end users. This is done by capturing the most dominant underlying relationships between the model's inputs and outputs. Previous works demonstrated the usemore » of the reduced order modeling for a single physics code, such as a radiation transport calculation. This paper extends those works to coupled code systems as currently employed in assembly calculations. Finally, numerical tests are conducted using realistic SCALE assembly models with resonance self-shielding, neutron transport, and nuclides transmutation/depletion models representing the components of the coupled code system.« less

6. Hybrid reduced order modeling for assembly calculations

SciTech Connect

Bang, Youngsuk; Abdel-Khalik, Hany S.; Jessee, Matthew A.; Mertyurek, Ugur

2015-08-14

While the accuracy of assembly calculations has greatly improved due to the increase in computer power enabling more refined description of the phase space and use of more sophisticated numerical algorithms, the computational cost continues to increase which limits the full utilization of their effectiveness for routine engineering analysis. Reduced order modeling is a mathematical vehicle that scales down the dimensionality of large-scale numerical problems to enable their repeated executions on small computing environment, often available to end users. This is done by capturing the most dominant underlying relationships between the model's inputs and outputs. Previous works demonstrated the use of the reduced order modeling for a single physics code, such as a radiation transport calculation. This paper extends those works to coupled code systems as currently employed in assembly calculations. Finally, numerical tests are conducted using realistic SCALE assembly models with resonance self-shielding, neutron transport, and nuclides transmutation/depletion models representing the components of the coupled code system.

7. Toward black-box-type full- and reduced-dimensional variational (ro)vibrational computations

Mátyus, Edit; Czakó, Gábor; Császár, Attila G.

2009-04-01

A black-box-type algorithm is presented for the variational computation of energy levels and wave functions using a (ro)vibrational Hamiltonian expressed in an arbitrarily chosen body-fixed frame and in any set of internal coordinates of full or reduced vibrational dimensionality. To make the required numerical work feasible, matrix representation of the operators is constructed using a discrete variable representation (DVR). The favorable properties of DVR are exploited in the straightforward and numerically exact inclusion of any representation of the potential and the kinetic energy including the G matrix and the extrapotential term. In this algorithm there is no need for an a priori analytic derivation of the kinetic energy operator, as all of its matrix elements at each grid point are computed numerically either in a full- or a reduced-dimensional model. Due to the simple and straightforward definition of reduced-dimensional models within this approach, a fully anharmonic variational treatment of large, otherwise intractable molecular systems becomes available. In the computer code based on the above algorithm, there is no inherent limitation for the maximally coupled number of vibrational degrees of freedom. However, in practice current personal computers allow the treatment of about nine fully coupled vibrational dimensions. Computation of vibrational band origins of full and reduced dimensions showing the advantages and limitations of the algorithm and the related computer code are presented for the water, ammonia, and methane molecules.

8. The strong-coupling polaron in reduced dimensionality

Sahoo, Satyabrata

1998-03-01

Based on the LLP-H approach, a detailed study of the electron confinement in a polar semiconductor heterostructure has been made to derive analytically the ground state energy and the effective mass of the Fröhlich polaron in quasi-two-dimensional (Q2D) and quasi-one-dimensional (Q1D) systems.

9. Extra-dimensional models on the lattice

DOE PAGES

Knechtli, Francesco; Rinaldi, Enrico

2016-08-05

In this paper we summarize the ongoing effort to study extra-dimensional gauge theories with lattice simulations. In these models the Higgs field is identified with extra-dimensional components of the gauge field. The Higgs potential is generated by quantum corrections and is protected from divergences by the higher dimensional gauge symmetry. Dimensional reduction to four dimensions can occur through compactification or localization. Gauge-Higgs unification models are often studied using perturbation theory. Numerical lattice simulations are used to go beyond these perturbative expectations and to include nonperturbative effects. We describe the known perturbative predictions and their fate in the strongly-coupled regime formore » various extra-dimensional models.« less

10. Reduced dimensionality and spatial entanglement in highly anisotropic Bose-Einstein condensates

Tacla, Alexandre B.; Caves, Carlton M.

2014-07-01

We investigate the reduced dimensionality of highly anisotropic Bose-Einstein condensates (BECs) in connection with the entanglement between the spatial degrees of freedom. We argue that the reduced dimensionality of the BEC is physically meaningful in a regime where spatial correlations are negligible. We handle the problem analytically within the mean-field approximation for general quasi-one-dimensional and quasi-two-dimensional geometries and obtain the optimal reduced-dimension, pure-state description of the condensate mean field. We give explicit solutions for the case of harmonic potentials, which we compare against exact numerical integration of the three-dimensional Gross-Pitaevskii equation.

11. Reduced-order modelling numerical homogenization.

PubMed

Abdulle, A; Bai, Y

2014-08-06

A general framework to combine numerical homogenization and reduced-order modelling techniques for partial differential equations (PDEs) with multiple scales is described. Numerical homogenization methods are usually efficient to approximate the effective solution of PDEs with multiple scales. However, classical numerical homogenization techniques require the numerical solution of a large number of so-called microproblems to approximate the effective data at selected grid points of the computational domain. Such computations become particularly expensive for high-dimensional, time-dependent or nonlinear problems. In this paper, we explain how numerical homogenization method can benefit from reduced-order modelling techniques that allow one to identify offline and online computational procedures. The effective data are only computed accurately at a carefully selected number of grid points (offline stage) appropriately 'interpolated' in the online stage resulting in an online cost comparable to that of a single-scale solver. The methodology is presented for a class of PDEs with multiple scales, including elliptic, parabolic, wave and nonlinear problems. Numerical examples, including wave propagation in inhomogeneous media and solute transport in unsaturated porous media, illustrate the proposed method.

12. [Dimensional modeling analysis for outpatient payments].

PubMed

Guo, Yi-zhong; Guo, Yi-min

2008-09-01

This paper introduces a data warehouse model for outpatient payments, which is designed according to the requirements of the hospital financial management while dimensional modeling technique is combined with the analysis on the requirements. This data warehouse model can not only improve the accuracy of financial management requirements, but also greatly increase the efficiency and quality of the hospital management.

13. 3-Dimensional Topographic Models for the Classroom

NASA Technical Reports Server (NTRS)

Keller, J. W.; Roark, J. H.; Sakimoto, S. E. H.; Stockman, S.; Frey, H. V.

2003-01-01

We have recently undertaken a program to develop educational tools using 3-dimensional solid models of digital elevation data acquired by the Mars Orbital Laser Altimeter (MOLA) for Mars as well as a variety of sources for elevation data of the Earth. This work is made possible by the use of rapid prototyping technology to construct solid 3-Dimensional models of science data. We recently acquired rapid prototyping machine that builds 3-dimensional models in extruded plastic. While the machine was acquired to assist in the design and development of scientific instruments and hardware, it is also fully capable of producing models of spacecraft remote sensing data. We have demonstrated this by using Mars Orbiter Laser Altimeter (MOLA) topographic data and Earth based topographic data to produce extruded plastic topographic models which are visually appealing and instantly engage those who handle them.

14. Reduced Order Modeling in General Relativity

Tiglio, Manuel

2014-03-01

Reduced Order Modeling is an emerging yet fast developing filed in gravitational wave physics. The main goals are to enable fast modeling and parameter estimation of any detected signal, along with rapid matched filtering detecting. I will focus on the first two. Some accomplishments include being able to replace, with essentially no lost of physical accuracy, the original models with surrogate ones (which are not effective ones, that is, they do not simplify the physics but go on a very different track, exploiting the particulars of the waveform family under consideration and state of the art dimensional reduction techniques) which are very fast to evaluate. For example, for EOB models they are at least around 3 orders of magnitude faster than solving the original equations, with physically equivalent results. For numerical simulations the speedup is at least 11 orders of magnitude. For parameter estimation our current numbers are about bringing ~100 days for a single SPA inspiral binary neutron star Bayesian parameter estimation analysis to under a day. More recently, it has been shown that the full precessing problem for, say, 200 cycles, can be represented, through some new ideas, by a remarkably compact set of carefully chosen reduced basis waveforms (~10-100, depending on the accuracy requirements). I will highlight what I personally believe are the challenges to face next in this subarea of GW physics and where efforts should be directed. This talk will summarize work in collaboration with: Harbir Antil (GMU), Jonathan Blackman (Caltech), Priscila Canizares (IoA, Cambridge, UK), Sarah Caudill (UWM), Jonathan Gair (IoA. Cambridge. UK), Scott Field (UMD), Chad R. Galley (Caltech), Frank Herrmann (Germany), Han Hestahven (EPFL, Switzerland), Jason Kaye (Brown, Stanford & Courant). Evan Ochsner (UWM), Ricardo Nochetto (UMD), Vivien Raymond (LIGO, Caltech), Rory Smith (LIGO, Caltech) Bela Ssilagyi (Caltech) and MT (UMD & Caltech).

15. Finding four dimensional symplectic maps with reduced chaos: Preliminary results

SciTech Connect

Weishi Wan; Cary, J.R.; Shasharina, S.G.

1998-06-01

A method for finding integrable four-dimensional symplectic maps is outlined. The method relies on solving for parameter values at which the linear stability factors of the fixed points of the map have the values corresponding to integrability. This method is applied to accelerator lattices in order to increase dynamic aperture. Results show a increase of the dynamic aperture after correction, which implies the validity of the method.

16. Reduced-Order Modeling: New Approaches for Computational Physics

NASA Technical Reports Server (NTRS)

Beran, Philip S.; Silva, Walter A.

2001-01-01

In this paper, we review the development of new reduced-order modeling techniques and discuss their applicability to various problems in computational physics. Emphasis is given to methods ba'sed on Volterra series representations and the proper orthogonal decomposition. Results are reported for different nonlinear systems to provide clear examples of the construction and use of reduced-order models, particularly in the multi-disciplinary field of computational aeroelasticity. Unsteady aerodynamic and aeroelastic behaviors of two- dimensional and three-dimensional geometries are described. Large increases in computational efficiency are obtained through the use of reduced-order models, thereby justifying the initial computational expense of constructing these models and inotivatim,- their use for multi-disciplinary design analysis.

17. A reduced-order optimization strategy for four dimensional variational data assimilation

Hoteit, I.; Khol, A.; Stammer, D.; Heimbach, P.

2003-04-01

Four dimensional variational data assimilation methods remain expensive for operational oceanography. Every optimization step requires actually one forward and one backward integration of the numerical model, and the huge dimension of the system control vector makes the convergence of the optimization procedure very slow. In this study, an order reduction is applied to the control vector in order to speed up the convergence of the optimization. The reduction is based on an Empirical Orthogonal Functions (EOF) analysis. Some important features however can not be represented in the reduced space. We therefore propose to start the optimization in the reduced space and than continue in the full control space. The effectiveness of this strategy is demonstrated using a simple configuration of the MIT model over the North Atlantic ocean.

18. One-dimensional model update

SciTech Connect

Wuebbles, D.J.; Penner, J.E.; Tarp, R.L.

1981-01-01

Changes were made in the reaction kinetics constants for the atmospheric chemistry model. The CH/sub 3/CCl/sub 3/ emission rate was changed to 10/sup 9/ lb/y. Values for the solar flux vs wavelength were updated. Solar variability is discussed. Effects of clouds on photolysis rates are considered. (DLC)

19. A reduced-order approach to four-dimensional variational data assimilation using proper orthogonal decomposition

Cao, Yanhua; Zhu, Jiang; Navon, I. M.; Luo, Zhendong

2007-04-01

Four-dimensional variational data assimilation (4DVAR) is a powerful tool for data assimilation in meteorology and oceanography. However, a major hurdle in use of 4DVAR for realistic general circulation models is the dimension of the control space (generally equal to the size of the model state variable and typically of order 107-108) and the high computational cost in computing the cost function and its gradient that require integration model and its adjoint model.In this paper, we propose a 4DVAR approach based on proper orthogonal decomposition (POD). POD is an efficient way to carry out reduced order modelling by identifying the few most energetic modes in a sequence of snapshots from a time-dependent system, and providing a means of obtaining a low-dimensional description of the system's dynamics. The POD-based 4DVAR not only reduces the dimension of control space, but also reduces the size of dynamical model, both in dramatic ways. The novelty of our approach also consists in the inclusion of adaptability, applied when in the process of iterative control the new control variables depart significantly from the ones on which the POD model was based upon. In addition, these approaches also allow to conveniently constructing the adjoint model.The proposed POD-based 4DVAR methods are tested and demonstrated using a reduced gravity wave ocean model in Pacific domain in the context of identical twin data assimilation experiments. A comparison with data assimilation experiments in the full model space shows that with an appropriate selection of the basis functions the optimization in the POD space is able to provide accurate results at a reduced computational cost. The POD-based 4DVAR methods have the potential to approximate the performance of full order 4DVAR with less than 1/100 computer time of the full order 4DVAR. The HFTN (Hessian-free truncated-Newton)algorithm benefits most from the order reduction (see (Int. J. Numer. Meth. Fluids, in press)) since

20. Feature Selection for Varying Coefficient Models With Ultrahigh Dimensional Covariates.

PubMed

Liu, Jingyuan; Li, Runze; Wu, Rongling

2014-01-01

This paper is concerned with feature screening and variable selection for varying coefficient models with ultrahigh dimensional covariates. We propose a new feature screening procedure for these models based on conditional correlation coefficient. We systematically study the theoretical properties of the proposed procedure, and establish their sure screening property and the ranking consistency. To enhance the finite sample performance of the proposed procedure, we further develop an iterative feature screening procedure. Monte Carlo simulation studies were conducted to examine the performance of the proposed procedures. In practice, we advocate a two-stage approach for varying coefficient models. The two stage approach consists of (a) reducing the ultrahigh dimensionality by using the proposed procedure and (b) applying regularization methods for dimension-reduced varying coefficient models to make statistical inferences on the coefficient functions. We illustrate the proposed two-stage approach by a real data example.

1. Reduced MHD in Astrophysical Applications: Two-dimensional or Three-dimensional?

Oughton, S.; Matthaeus, W. H.; Dmitruk, P.

2017-04-01

Originally proposed as an efficient approach to computation of nonlinear dynamics in tokamak fusion research devices, reduced magnetohydrodynamics (RMHD) has subsequently found application in studies of coronal heating, flux tube dynamics, charged particle transport, and, in general, as an approximation to describe plasma turbulence in space physics and astrophysics. Given the diverse set of derivations available in the literature, there has emerged some level of discussion and a lack of consensus regarding the completeness of RMHD as a turbulence model, and its applicability in contexts such as the solar wind. Some of the key issues in this discussion are examined here, emphasizing that RMHD is properly neither 2D nor fully 3D, being rather an incomplete representation that enforces at least one family of extraneous conservation laws.

2. Rank-Based Similarity Search: Reducing the Dimensional Dependence.

PubMed

Houle, Michael E; Nett, Michael

2015-01-01

This paper introduces a data structure for k-NN search, the Rank Cover Tree (RCT), whose pruning tests rely solely on the comparison of similarity values; other properties of the underlying space, such as the triangle inequality, are not employed. Objects are selected according to their ranks with respect to the query object, allowing much tighter control on the overall execution costs. A formal theoretical analysis shows that with very high probability, the RCT returns a correct query result in time that depends very competitively on a measure of the intrinsic dimensionality of the data set. The experimental results for the RCT show that non-metric pruning strategies for similarity search can be practical even when the representational dimension of the data is extremely high. They also show that the RCT is capable of meeting or exceeding the level of performance of state-of-the-art methods that make use of metric pruning or other selection tests involving numerical constraints on distance values.

3. Pattern recognition in volcano seismology - Reducing spectral dimensionality

Unglert, K.; Radic, V.; Jellinek, M.

2015-12-01

Variations in the spectral content of volcano seismicity can relate to changes in volcanic activity. Low-frequency seismic signals often precede or accompany volcanic eruptions. However, they are commonly manually identified in spectra or spectrograms, and their definition in spectral space differs from one volcanic setting to the next. Increasingly long time series of monitoring data at volcano observatories require automated tools to facilitate rapid processing and aid with pattern identification related to impending eruptions. Furthermore, knowledge transfer between volcanic settings is difficult if the methods to identify and analyze the characteristics of seismic signals differ. To address these challenges we evaluate whether a machine learning technique called Self-Organizing Maps (SOMs) can be used to characterize the dominant spectral components of volcano seismicity without the need for any a priori knowledge of different signal classes. This could reduce the dimensions of the spectral space typically analyzed by orders of magnitude, and enable rapid processing and visualization. Preliminary results suggest that the temporal evolution of volcano seismicity at Kilauea Volcano, Hawaii, can be reduced to as few as 2 spectral components by using a combination of SOMs and cluster analysis. We will further refine our methodology with several datasets from Hawaii and Alaska, among others, and compare it to other techniques.

4. Escherichia coli growth under modeled reduced gravity

NASA Technical Reports Server (NTRS)

Baker, Paul W.; Meyer, Michelle L.; Leff, Laura G.

2004-01-01

Bacteria exhibit varying responses to modeled reduced gravity that can be simulated by clino-rotation. When Escherichia coli was subjected to different rotation speeds during clino-rotation, significant differences between modeled reduced gravity and normal gravity controls were observed only at higher speeds (30-50 rpm). There was no apparent affect of removing samples on the results obtained. When E. coli was grown in minimal medium (at 40 rpm), cell size was not affected by modeled reduced gravity and there were few differences in cell numbers. However, in higher nutrient conditions (i.e., dilute nutrient broth), total cell numbers were higher and cells were smaller under reduced gravity compared to normal gravity controls. Overall, the responses to modeled reduced gravity varied with nutrient conditions; larger surface to volume ratios may help compensate for the zone of nutrient depletion around the cells under modeled reduced gravity.

5. Two dimensional thick center vortex model

SciTech Connect

2016-01-22

The potential between static color source is calculated in the SU (3) gauge group by introducing a two dimensional vortex flux. To generalize the model, the length of the Wilson loop is equal to R oriented along the x axis, and the vortex flux is considered as a function of x and y. The comparison between the generalized model and the original one shows that the intermediate linear regime is increased significantly and better agreement with Casimir scaling is achieved. Furthermore, the model is applied to calculate the potential between baryons.

6. Semi-Empirical Modeling of Two-Dimensional and Three-Dimensional Dynamic Stall

Modarres, Ramin

Helicopters are generally limited in their performance by the phenomenon of dynamic stall. The purpose of this work is to develop a method for modeling dynamic stall that is appropriate to preliminary design and flight simulator applications. Unlike other semi-empirical dynamic stall models, the model developed in this thesis, not only counts for the well-known, three-dimensional flow effects on the stalled loads but also captures the secondary vortex-shedding phenomenon that has been seen in experiments. The fundamental physics that modify dynamic-stall behavior and that have been extended from two-dimensional to three-dimensional flow are, namely: 1.) yawed flow, 2.) time-varying velocity, 3.) the rotational environment and 4.) the radial blade coupling. For the reduced-order modeling, extra nonlinear states have been added to the dynamic stall model in order to simulate the double-dynamic-stall phenomenon. The results of this study will have practical applications to aerospace systems, such as compliant or morphing surfaces in rotary-wing systems that encounter transient or periodic separation and reattachment during phenomena such as dynamic stall.

7. Bootstrapping the Three Dimensional Supersymmetric Ising Model.

PubMed

Bobev, Nikolay; El-Showk, Sheer; Mazáč, Dalimil; Paulos, Miguel F

2015-07-31

We implement the conformal bootstrap program for three dimensional conformal field theories with N=2 supersymmetry and find universal constraints on the spectrum of operator dimensions in these theories. By studying the bounds on the dimension of the first scalar appearing in the operator product expansion of a chiral and an antichiral primary, we find a kink at the expected location of the critical three dimensional N=2 Wess-Zumino model, which can be thought of as a supersymmetric analog of the critical Ising model. Focusing on this kink, we determine, to high accuracy, the low-lying spectrum of operator dimensions of the theory, as well as the stress-tensor two-point function. We find that the latter is in an excellent agreement with an exact computation.

8. Dimensional Reduction for the General Markov Model on Phylogenetic Trees.

PubMed

Sumner, Jeremy G

2017-03-01

We present a method of dimensional reduction for the general Markov model of sequence evolution on a phylogenetic tree. We show that taking certain linear combinations of the associated random variables (site pattern counts) reduces the dimensionality of the model from exponential in the number of extant taxa, to quadratic in the number of taxa, while retaining the ability to statistically identify phylogenetic divergence events. A key feature is the identification of an invariant subspace which depends only bilinearly on the model parameters, in contrast to the usual multi-linear dependence in the full space. We discuss potential applications including the computation of split (edge) weights on phylogenetic trees from observed sequence data.

9. Solution of three-dimensional afterbody flow using reduced Navier-Stokes equations

NASA Technical Reports Server (NTRS)

Almahroos, H. M. H.; Khosla, P. K.; Rubin, S. G.

1991-01-01

The flow over afterbody geometries was investigated using the reduced Navier-Stokes (RNS) approximation. Both pressure velocity flux-split and composites velocity primitive variable formulations were considered. Pressure or pseudopotential relaxation procedures are combined with sparse matrix or coupled strongly implicit algorithms to form a three-dimensional solver for general non-orthogonal coordinates. Three-dimensional subsonic and transonic viscous/inviscid interacting flows were evaluated. Solutions with and without regions of recirculation were obtained.

10. Low dimensional modeling of wall turbulence

2015-11-01

In this talk we will review the original low dimensional dynamical model of the wall region of a turbulent boundary layer [Aubry, Holmes, Lumley and Stone, Journal of Fluid Dynamics 192, 1988] and discuss its impact on the field of fluid dynamics. We will also invite a few researchers who would like to make brief comments on the influence Lumley had on their research paths. In collaboration with Philip Holmes, Program in Applied and Computational Mathematics and Department of Mechanical and Aerospace Engineering, Princeton University, Princeton, NJ.

11. Symmetries of self-dual Yang-Mills equations dimensionally reduced from (2, 2) space-time

2011-01-01

We construct infinite-dimensional symmetries of the two dimensional equation which results from the dimensional reduction of the self-duality condition in (2, 2) signature space-time. These are symmetries of the dimensionally reduced Chalmers-Siegel action and so hold off-shell.

12. Three-dimensional ring current decay model

NASA Technical Reports Server (NTRS)

Fok, Mei-Ching; Moore, Thomas E.; Kozyra, Janet U.; Ho, George C.; Hamilton, Douglas C.

1995-01-01

This work is an extension of a previous ring current decay model. In the previous work, a two-dimensional kinetic model was constructed to study the temporal variations of the equatorially mirroring ring current ions, considering charge exchange and Coulomb drag losses along drift paths in a magnetic dipole field. In this work, particles with arbitrary pitch angle are considered. By bounce averaging the kinetic equation of the phase space density, information along magnetic field lines can be inferred from the equator. The three-dimensional model is used to simulate the recovery phase of a model great magnetic storm, similar to that which occurred in early February 1986. The initial distribution of ring current ions (at the minimum Dst) is extrapolated to all local times from AMPTE/CCE spacecraft observations on the dawnside and duskside of the inner magnetosphere spanning the L value range L = 2.25 to 6.75. Observations by AMPTE/CCE of ring current distributions over subsequent orbits during the storm recovery phase are compared to model outputs. In general, the calculated ion fluxes are consistent with observations, except for H(+) fluxes at tens of keV, which are always overestimated. A newly invented visualization idea, designated as a chromogram, is used to display the spatial and energy dependence of the ring current ion differential flux. Important features of storm time ring current, such as day-night asymmetry during injection and drift hole on the dayside at low energies (less than 10 keV), are manifested in the chromogram representation. The pitch angle distribution is well fit by the function, J(sub o)(1 + Ay(sup n)), where y is sine of the equatorial pitch angle. The evolution of the index n is a combined effect of charge exchange loss and particle drift. At low energies (less than 30 keV), both drift dispersion and charge exchange are important in determining n.

13. Three-dimensional visualization for large models

Roth, Michael W.

2001-09-01

High-resolution (0.3-1 m) digital-elevation data is widely available from commercial sources. Whereas the production of two-dimensional (2D) mapping products from such data is standard practice, the visualization of such three-dimensional (3D) data has been problematic. The basis for this problem is the same as that for the large-model problem in computer graphics-- large amounts of geometry are difficult for current rendering algorithms and hardware. This paper describes a cost-effective solution to this problem that has two parts. First is the employment of the latest in cost-effective 3D chips and video boards that have recently emerged. The second part is the employment of quad-tree data structures for efficient data storage and retrieval during rendering. The result is the capability for real-time display of large (over tens of millions of samples) digital elevation models on modest PC-based systems. This paper shows several demonstrations of this approach using airborne lidar data. The implication of this work is a paradigm shift for geo-spatial information systems--3D data can now be as easy to use as 2D data.

14. Higher dimensional generalizations of the SYK model

Berkooz, Micha; Narayan, Prithvi; Rozali, Moshe; Simón, Joan

2017-01-01

We discuss a 1+1 dimensional generalization of the Sachdev-Ye-Kitaev model. The model contains N Majorana fermions at each lattice site with a nearest-neighbour hopping term. The SYK random interaction is restricted to low momentum fermions of definite chirality within each lattice site. This gives rise to an ordinary 1+1 field theory above some energy scale and a low energy SYK-like behavior. We exhibit a class of low-pass filters which give rise to a rich variety of hyperscaling behaviour in the IR. We also discuss another set of generalizations which describes probing an SYK system with an external fermion, together with the new scaling behavior they exhibit in the IR.

15. Vlasov multi-dimensional model dispersion relation

SciTech Connect

Lushnikov, Pavel M.; Rose, Harvey A.; Silantyev, Denis A.; Vladimirova, Natalia

2014-07-15

A hybrid model of the Vlasov equation in multiple spatial dimension D > 1 [H. A. Rose and W. Daughton, Phys. Plasmas 18, 122109 (2011)], the Vlasov multi dimensional model (VMD), consists of standard Vlasov dynamics along a preferred direction, the z direction, and N flows. At each z, these flows are in the plane perpendicular to the z axis. They satisfy Eulerian-type hydrodynamics with coupling by self-consistent electric and magnetic fields. Every solution of the VMD is an exact solution of the original Vlasov equation. We show approximate convergence of the VMD Langmuir wave dispersion relation in thermal plasma to that of Vlasov-Landau as N increases. Departure from strict rotational invariance about the z axis for small perpendicular wavenumber Langmuir fluctuations in 3D goes to zero like θ{sup N}, where θ is the polar angle and flows are arranged uniformly over the azimuthal angle.

16. Describing high-dimensional dynamics with low-dimensional piecewise affine models: applications to renewable energy.

PubMed

Hirata, Yoshito; Aihara, Kazuyuki

2012-06-01

We introduce a low-dimensional description for a high-dimensional system, which is a piecewise affine model whose state space is divided by permutations. We show that the proposed model tends to predict wind speeds and photovoltaic outputs for the time scales from seconds to 100 s better than by global affine models. In addition, computations using the piecewise affine model are much faster than those of usual nonlinear models such as radial basis function models.

17. Incorporating 3-dimensional models in online articles

PubMed Central

Cevidanes, Lucia H. S.; Ruellasa, Antonio C. O.; Jomier, Julien; Nguyen, Tung; Pieper, Steve; Budin, Francois; Styner, Martin; Paniagua, Beatriz

2015-01-01

Introduction The aims of this article were to introduce the capability to view and interact with 3-dimensional (3D) surface models in online publications, and to describe how to prepare surface models for such online 3D visualizations. Methods Three-dimensional image analysis methods include image acquisition, construction of surface models, registration in a common coordinate system, visualization of overlays, and quantification of changes. Cone-beam computed tomography scans were acquired as volumetric images that can be visualized as 3D projected images or used to construct polygonal meshes or surfaces of specific anatomic structures of interest. The anatomic structures of interest in the scans can be labeled with color (3D volumetric label maps), and then the scans are registered in a common coordinate system using a target region as the reference. The registered 3D volumetric label maps can be saved in .obj, .ply, .stl, or .vtk file formats and used for overlays, quantification of differences in each of the 3 planes of space, or color-coded graphic displays of 3D surface distances. Results All registered 3D surface models in this study were saved in .vtk file format and loaded in the Elsevier 3D viewer. In this study, we describe possible ways to visualize the surface models constructed from cone-beam computed tomography images using 2D and 3D figures. The 3D surface models are available in the article’s online version for viewing and downloading using the reader’s software of choice. These 3D graphic displays are represented in the print version as 2D snapshots. Overlays and color-coded distance maps can be displayed using the reader’s software of choice, allowing graphic assessment of the location and direction of changes or morphologic differences relative to the structure of reference. The interpretation of 3D overlays and quantitative color-coded maps requires basic knowledge of 3D image analysis. Conclusions When submitting manuscripts, authors can

18. High dimensional decision dilemmas in climate models

Bracco, A.; Neelin, J. D.; Luo, H.; McWilliams, J. C.; Meyerson, J. E.

2013-10-01

An important source of uncertainty in climate models is linked to the calibration of model parameters. Interest in systematic and automated parameter optimization procedures stems from the desire to improve the model climatology and to quantify the average sensitivity associated with potential changes in the climate system. Building upon on the smoothness of the response of an atmospheric circulation model (AGCM) to changes of four adjustable parameters, Neelin et al. (2010) used a quadratic metamodel to objectively calibrate the AGCM. The metamodel accurately estimates global spatial averages of common fields of climatic interest, from precipitation, to low and high level winds, from temperature at various levels to sea level pressure and geopotential height, while providing a computationally cheap strategy to explore the influence of parameter settings. Here, guided by the metamodel, the ambiguities or dilemmas related to the decision making process in relation to model sensitivity and optimization are examined. Simulations of current climate are subject to considerable regional-scale biases. Those biases may vary substantially depending on the climate variable considered, and/or on the performance metric adopted. Common dilemmas are associated with model revisions yielding improvement in one field or regional pattern or season, but degradation in another, or improvement in the model climatology but degradation in the interannual variability representation. Challenges are posed to the modeler by the high dimensionality of the model output fields and by the large number of adjustable parameters. The use of the metamodel in the optimization strategy helps visualize trade-offs at a regional level, e.g., how mismatches between sensitivity and error spatial fields yield regional errors under minimization of global objective functions.

19. A three-dimensional human walking model

Yang, Q. S.; Qin, J. W.; Law, S. S.

2015-11-01

A three-dimensional human bipedal walking model with compliant legs is presented in this paper. The legs are modeled with time-variant dampers, and the model is able to characterize the gait pattern of an individual using a minimal set of parameters. Feedback control, for both the forward and lateral movements, is implemented to regulate the walking performance of the pedestrian. The model provides an improvement over classic invert pendulum models. Numerical studies were undertaken to investigate the effects of leg stiffness and attack angle. Simulation results show that when walking at a given speed, increasing the leg stiffness with a constant attack angle results in a longer step length, a higher step frequency, a faster walking speed and an increase in both the peak vertical and lateral ground reaction forces. Increasing the attack angle with a constant leg stiffness results in a higher step frequency, a decrease in the step length, an increase in the total energy of the system and a decrease in both the peak vertical and lateral ground reaction forces.

20. Two-Dimensional Computational Model for Wave Rotor Flow Dynamics

NASA Technical Reports Server (NTRS)

Welch, Gerard E.

1996-01-01

A two-dimensional (theta,z) Navier-Stokes solver for multi-port wave rotor flow simulation is described. The finite-volume form of the unsteady thin-layer Navier-Stokes equations are integrated in time on multi-block grids that represent the stationary inlet and outlet ports and the moving rotor passages of the wave rotor. Computed results are compared with three-port wave rotor experimental data. The model is applied to predict the performance of a planned four-port wave rotor experiment. Two-dimensional flow features that reduce machine performance and influence rotor blade and duct wall thermal loads are identified. The performance impact of rounding the inlet port wall, to inhibit separation during passage gradual opening, is assessed.

1. Three-dimensional modelling of Venus photochemistry

Stolzenbach, Aurélien; Lefèvre, Franck; Lebonnois, Sébastien; Määttänen, Anni; Bekki, Slimane

2014-05-01

We have developed a new code of the Venus atmospheric chemistry based on our photochemical model already in use for Mars (e.g., Lefèvre et al., J. Geophys. Res., 2004). For Venus, the code also includes a parameterized treatment of cloud microphysics that computes the composition of sulphuric acid droplets and their number density based on a given droplet size distribution in altitude. We coupled this photochemical-microphysical package to the LMD general circulation model of Venus (Lebonnois et al., J. Geophys. Res., 2010) with a sedimentation module recently added. We will describe preliminary results obtained with this first three-dimensional model of the Venus photochemistry. The space and time distribution of key chemical species as well as the modelled clouds characteristics will be detailed and compared to observations performed from Venus Express and from the Earth (e.g. Knollenberg and Hunten, J. Geophys. Res., 1980 ; Wilquet et al., J. Geophys. Res., 2009 ; Sandor et al., Icarus, 2012).

2. Three-Dimensional Modelling of Venus Photochemistry

Stolzenbach, A.; Lefèvre, F.; Lebonnois, S.; Maattanen, A. E.; Bekki, S.

2015-12-01

We have developed a new code of the Venus atmospheric chemistry based on our photochemical model already in use for Mars (e.g., Lefèvre et al., J. Geophys. Res., 2004). For Venus, the code also includes a parameterized treatment of cloud microphysics that computes the composition of sulphuric acid droplets and their number density based on a given droplet size distribution in altitude and latitude. We coupled this photochemical-microphysical package to the LMD general circulation model of Venus (Lebonnois et al., J. Geophys. Res., 2010) with a sedimentation module that takes into account the parametrized droplet size distribution. We will describe the results obtained with this first three-dimensional model of the Venus photochemistry. The space and time distribution of key chemical species as well as the modelled clouds characteristics will be detailed and compared to observations performed from Venus Express and from the Earth (e.g. Knollenberg and Hunten, J. Geophys. Res., 1980 ; Wilquet et al., J. Geophys. Res., 2009 ; Sandor et al., Icarus, 2012 ; Mahieux et al., PSS, 2014 ; Marcq et al., 2015, PSS).

3. Multiscale modeling of three-dimensional genome

Zhang, Bin; Wolynes, Peter

The genome, the blueprint of life, contains nearly all the information needed to build and maintain an entire organism. A comprehensive understanding of the genome is of paramount interest to human health and will advance progress in many areas, including life sciences, medicine, and biotechnology. The overarching goal of my research is to understand the structure-dynamics-function relationships of the human genome. In this talk, I will be presenting our efforts in moving towards that goal, with a particular emphasis on studying the three-dimensional organization, the structure of the genome with multi-scale approaches. Specifically, I will discuss the reconstruction of genome structures at both interphase and metaphase by making use of data from chromosome conformation capture experiments. Computationally modeling of chromatin fiber at atomistic level from first principles will also be presented as our effort for studying the genome structure from bottom up.

4. Volumetric techniques: three-dimensional midface modeling

PubMed Central

Pierzchała, Ewa; Placek, Waldemar

2014-01-01

Aging is a complex process caused by many factors. The most important factors include exposure to UV radiation, smoking, facial muscle movement, gravity, loss and displacement of fat and bone resorption. As a symptom of aging, face loses elasticity, volume and cheerful look. While changing face proportions, the dominant part of a face is its bottom instead of the mid part. The use of three-dimensional face modelling techniques, particularly the mid-face – tear through and cheeks, restores the skin firmness, volume and healthy look. For this purpose the hyaluronic acid is used, calcium hydroxyapatite, and L-polylactic acid fillers. Volumetric techniques require precision and proper selection of the filling agent to give a sense of satisfaction to both the patient and the doctor. PMID:25610354

5. Volumetric techniques: three-dimensional midface modeling.

PubMed

Macierzyńska, Arleta; Pierzchała, Ewa; Placek, Waldemar

2014-12-01

Aging is a complex process caused by many factors. The most important factors include exposure to UV radiation, smoking, facial muscle movement, gravity, loss and displacement of fat and bone resorption. As a symptom of aging, face loses elasticity, volume and cheerful look. While changing face proportions, the dominant part of a face is its bottom instead of the mid part. The use of three-dimensional face modelling techniques, particularly the mid-face - tear through and cheeks, restores the skin firmness, volume and healthy look. For this purpose the hyaluronic acid is used, calcium hydroxyapatite, and L-polylactic acid fillers. Volumetric techniques require precision and proper selection of the filling agent to give a sense of satisfaction to both the patient and the doctor.

6. Reducing the two-loop large-scale structure power spectrum to low-dimensional, radial integrals

Schmittfull, Marcel; Vlah, Zvonimir

2016-11-01

Modeling the large-scale structure of the universe on nonlinear scales has the potential to substantially increase the science return of upcoming surveys by increasing the number of modes available for model comparisons. One way to achieve this is to model nonlinear scales perturbatively. Unfortunately, this involves high-dimensional loop integrals that are cumbersome to evaluate. Trying to simplify this, we show how two-loop (next-to-next-to-leading order) corrections to the density power spectrum can be reduced to low-dimensional, radial integrals. Many of those can be evaluated with a one-dimensional fast Fourier transform, which is significantly faster than the five-dimensional Monte-Carlo integrals that are needed otherwise. The general idea of this fast fourier transform perturbation theory method is to switch between Fourier and position space to avoid convolutions and integrate over orientations, leaving only radial integrals. This reformulation is independent of the underlying shape of the initial linear density power spectrum and should easily accommodate features such as those from baryonic acoustic oscillations. We also discuss how to account for halo bias and redshift space distortions.

7. New two-dimensional quantum models with shape invariance

SciTech Connect

Cannata, F.; Ioffe, M. V.; Nishnianidze, D. N.

2011-02-15

Two-dimensional quantum models which obey the property of shape invariance are built in the framework of polynomial two-dimensional supersymmetric quantum mechanics. They are obtained using the expressions for known one-dimensional shape invariant potentials. The constructed Hamiltonians are integrable with symmetry operators of fourth order in momenta, and they are not amenable to the conventional separation of variables.

8. Lattice model of reduced jamming by a barrier

Cirillo, Emilio N. M.; Krehel, Oleh; Muntean, Adrian; van Santen, Rutger

2016-10-01

We study an asymmetric simple exclusion process in a strip in the presence of a solid impenetrable barrier. We focus on the effect of the barrier on the residence time of the particles, namely, the typical time needed by the particles to cross the whole strip. We explore the conditions for reduced jamming when varying the environment (different drifts, reservoir densities, horizontal diffusion walks, etc.). In particular, we discover an interesting nonmonotonic behavior of the residence time as a function of the barrier length. Besides recovering by means of both the lattice dynamics and the mean-field model well-known aspects like the faster-is-slower effect and the intermittence of the flow, we propose also a birth-and-death process and a reduced one-dimensional (1D) model with variable barrier permeability to capture the behavior of the residence time with respect to the parameters.

9. Evaluation of reduced power spectra from three-dimensional k-space

von Papen, Michael; Saur, Joachim

2014-05-01

We present a new tool to evaluate one dimensional reduced power spectral densities (PSD) from arbitrary energy distributions in k-space. This enables us to calculate the power spectra as they are measured in spacecraft frame for any given measurement geometry assuming Taylor's frozen-in approximation. It is possible to seperately calculate the diagonal elements of the spectral tensor and also to insert additional, non-turbulent energy in k-space (e.g. mirror mode waves). Given a critically balanced turbulent cascade with k∥~ k⊥α, we explore the implications on the spectral form of the PSD and the functional dependence of the spectral index κ on the field-to-flow angle θ between plasma flow and background magnetic field. We show that critically balanced turbulence develops a θ-independent cascade with the spectral slope of the perpendicular cascade κ(θ=90°). This happens at frequencies f > fmax, where fmax(L,α,θ) is a function of outer scale L, critical balance exponent α and field-to-flow angle θ. The resulting spectra resemble the θ-independent spectral form reported by Grappin & Müller (2010). We also discuss potential damping terms acting on the k-space distribution of energy and their effect on the PSD. Further, we show that the functional dependence κ(θ) as found by Horbury et al. (2008) can be explained with a critically balanced turbulence model.

10. A Dimensionally Reduced Clustering Methodology for Heterogeneous Occupational Medicine Data Mining.

PubMed

Saâdaoui, Foued; Bertrand, Pierre R; Boudet, Gil; Rouffiac, Karine; Dutheil, Frédéric; Chamoux, Alain

2015-10-01

Clustering is a set of techniques of the statistical learning aimed at finding structures of heterogeneous partitions grouping homogenous data called clusters. There are several fields in which clustering was successfully applied, such as medicine, biology, finance, economics, etc. In this paper, we introduce the notion of clustering in multifactorial data analysis problems. A case study is conducted for an occupational medicine problem with the purpose of analyzing patterns in a population of 813 individuals. To reduce the data set dimensionality, we base our approach on the Principal Component Analysis (PCA), which is the statistical tool most commonly used in factorial analysis. However, the problems in nature, especially in medicine, are often based on heterogeneous-type qualitative-quantitative measurements, whereas PCA only processes quantitative ones. Besides, qualitative data are originally unobservable quantitative responses that are usually binary-coded. Hence, we propose a new set of strategies allowing to simultaneously handle quantitative and qualitative data. The principle of this approach is to perform a projection of the qualitative variables on the subspaces spanned by quantitative ones. Subsequently, an optimal model is allocated to the resulting PCA-regressed subspaces.

11. Three-dimensional modeling of tsunami waves

SciTech Connect

1985-01-01

Two- and three-dimensional, time-dependent, nonlinear, incompressible, viscous flow calculations of realistic models of tsunami wave formation and run up have been performed using the Los Alamos-developed SOLA-3D code. The results of the SOLA calculations are compared with shallow-water, long-wave calculations for the same problems using the SWAN code. Tsunami wave formation by a continental slope subsidence has been examined using the two numerical models. The SOLA waves were slower than the SWAN waves and the interaction with the shoreline was more complicated for the SOLA waves. In the SOLA calculation, the first wave was generated by the cavity being filled along the shoreline close to the source of motion. The second wave was generated by the cavity being filled from the deep water end. The two waves interacted along the shoreline resulting in the second wave being the largest wave with a velocity greater than the first wave. The second wave overtook the first wave at later times and greater distances from the source. In the SWAN calculation, the second wave was smaller than the first wave. 6 refs.

12. Inversion of infrared imaging bolometer based on one-dimensional and three-dimensional modeling in HL-2A

SciTech Connect

Gao, J. M. Liu, Y.; Li, W.; Cui, Z. Y.; Dong, Y. B.; Lu, J.; Xia, Z. W.; Yi, P.; Yang, Q. W.

2014-04-15

Linear regularization has been applied to the HL-2A infrared imaging bolometer to reconstruct local plasma emission with one-dimensional (1D) and three-dimensional (3D) modeling under the assumption of toroidal symmetry. In the 3D modeling, a new method to calculate the detector point response function is introduced. This method can be adapted to an arbitrarily shaped pinhole. With the full 3D treatment of the detector geometry, up to 50% of the mean-squared error is reduced compared with the 1D modeling. This is attributed to the effects of finite detector size being taken into account in the 3D modeling. Meanwhile, the number of the bolometer pixels has been optimized to 20 × 20 by making a trade-off between the number of bolometer pixels and the sensitivity of the system. The plasma radiated power density distributions have been calculated as a demonstration using 1D modeling and 3D modeling, respectively.

13. Simple Two-Dimensional Corrections for One-Dimensional Pulse Tube Models

NASA Technical Reports Server (NTRS)

Lee, J. M.; Kittel, P.; Timmerhaus, K. D.; Radebaugh, R.

2004-01-01

One-dimensional oscillating flow models are very useful for designing pulse tubes. They are simple to use, not computationally intensive, and the physical relationship between temperature, pressure and mass flow are easy to understand when used in conjunction with phasor diagrams. They do not possess, however, the ability to directly calculate thermal and momentum diffusion in the direction transverse to the oscillating flow. To account for transverse effects, lumped parameter corrections, which are obtained though experiment, must be used. Or two-dimensional solutions of the differential fluid equations must be obtained. A linear two-dimensional solution to the fluid equations has been obtained. The solution provides lumped parameter corrections for one-dimensional models. The model accounts for heat transfer and shear flow between the gas and the tube. The complex Nusselt number and complex shear wall are useful in describing these corrections, with phase relations and amplitudes scaled with the Prandtl and Valensi numbers. The calculated ratio, a, between a two-dimensional solution of the oscillating temperature and velocity and a one-dimensional solution for the same shows a scales linearly with Va for Va less than 30. In this region alpha less than 0.5, that is, the enthalpy flow calculated with a two-dimensional model is 50% of a calculation using a one-dimensional model. For Va greater than 250, alpha = 0.8, showing that diffusion is still important even when it is confined to a thing layer near the tube wall.

14. Reduced order modeling of fluid/structure interaction.

SciTech Connect

Barone, Matthew Franklin; Kalashnikova, Irina; Segalman, Daniel Joseph; Brake, Matthew Robert

2009-11-01

This report describes work performed from October 2007 through September 2009 under the Sandia Laboratory Directed Research and Development project titled 'Reduced Order Modeling of Fluid/Structure Interaction.' This project addresses fundamental aspects of techniques for construction of predictive Reduced Order Models (ROMs). A ROM is defined as a model, derived from a sequence of high-fidelity simulations, that preserves the essential physics and predictive capability of the original simulations but at a much lower computational cost. Techniques are developed for construction of provably stable linear Galerkin projection ROMs for compressible fluid flow, including a method for enforcing boundary conditions that preserves numerical stability. A convergence proof and error estimates are given for this class of ROM, and the method is demonstrated on a series of model problems. A reduced order method, based on the method of quadratic components, for solving the von Karman nonlinear plate equations is developed and tested. This method is applied to the problem of nonlinear limit cycle oscillations encountered when the plate interacts with an adjacent supersonic flow. A stability-preserving method for coupling the linear fluid ROM with the structural dynamics model for the elastic plate is constructed and tested. Methods for constructing efficient ROMs for nonlinear fluid equations are developed and tested on a one-dimensional convection-diffusion-reaction equation. These methods are combined with a symmetrization approach to construct a ROM technique for application to the compressible Navier-Stokes equations.

15. Three-dimensional percolation modeling of self-healing composites.

PubMed

2008-08-01

We study the self-healing process of materials with embedded "glue"-carrying cells, in the regime of the onset of the initial fatigue. Three-dimensional numerical simulations within the percolation-model approach are reported. The main numerical challenge taken up in the present work has been to extend the calculation of the conductance to three-dimensional lattices. Our results confirm the general features of the process: The onset of material fatigue is delayed, by development of a plateaulike time dependence of the material quality. We demonstrate that, in this low-damage regime, the changes in the conductance and thus in similar transport and response properties of the material can be used as measures of the material quality degradation. A new feature found for three dimensions, where it is much more profound than in earlier-studied two-dimensional systems, is the competition between the healing cells. Even for low initial densities of the healing cells, they interfere with each other and reduce each other's effective healing efficiency.

16. Reducing Spatial Data Complexity for Classification Models

Ruta, Dymitr; Gabrys, Bogdan

2007-11-01

Intelligent data analytics gradually becomes a day-to-day reality of today's businesses. However, despite rapidly increasing storage and computational power current state-of-the-art predictive models still can not handle massive and noisy corporate data warehouses. What is more adaptive and real-time operational environment requires multiple models to be frequently retrained which further hinders their use. Various data reduction techniques ranging from data sampling up to density retention models attempt to address this challenge by capturing a summarised data structure, yet they either do not account for labelled data or degrade the classification performance of the model trained on the condensed dataset. Our response is a proposition of a new general framework for reducing the complexity of labelled data by means of controlled spatial redistribution of class densities in the input space. On the example of Parzen Labelled Data Compressor (PLDC) we demonstrate a simulatory data condensation process directly inspired by the electrostatic field interaction where the data are moved and merged following the attracting and repelling interactions with the other labelled data. The process is controlled by the class density function built on the original data that acts as a class-sensitive potential field ensuring preservation of the original class density distributions, yet allowing data to rearrange and merge joining together their soft class partitions. As a result we achieved a model that reduces the labelled datasets much further than any competitive approaches yet with the maximum retention of the original class densities and hence the classification performance. PLDC leaves the reduced dataset with the soft accumulative class weights allowing for efficient online updates and as shown in a series of experiments if coupled with Parzen Density Classifier (PDC) significantly outperforms competitive data condensation methods in terms of classification performance at the

17. Reducing Spatial Data Complexity for Classification Models

SciTech Connect

Ruta, Dymitr; Gabrys, Bogdan

2007-11-29

Intelligent data analytics gradually becomes a day-to-day reality of today's businesses. However, despite rapidly increasing storage and computational power current state-of-the-art predictive models still can not handle massive and noisy corporate data warehouses. What is more adaptive and real-time operational environment requires multiple models to be frequently retrained which further hinders their use. Various data reduction techniques ranging from data sampling up to density retention models attempt to address this challenge by capturing a summarised data structure, yet they either do not account for labelled data or degrade the classification performance of the model trained on the condensed dataset. Our response is a proposition of a new general framework for reducing the complexity of labelled data by means of controlled spatial redistribution of class densities in the input space. On the example of Parzen Labelled Data Compressor (PLDC) we demonstrate a simulatory data condensation process directly inspired by the electrostatic field interaction where the data are moved and merged following the attracting and repelling interactions with the other labelled data. The process is controlled by the class density function built on the original data that acts as a class-sensitive potential field ensuring preservation of the original class density distributions, yet allowing data to rearrange and merge joining together their soft class partitions. As a result we achieved a model that reduces the labelled datasets much further than any competitive approaches yet with the maximum retention of the original class densities and hence the classification performance. PLDC leaves the reduced dataset with the soft accumulative class weights allowing for efficient online updates and as shown in a series of experiments if coupled with Parzen Density Classifier (PDC) significantly outperforms competitive data condensation methods in terms of classification performance at the

18. TRANSMISSION SPECTRA OF THREE-DIMENSIONAL HOT JUPITER MODEL ATMOSPHERES

SciTech Connect

Fortney, J. J.; Shabram, M.; Showman, A. P.; Lian, Y.; Lewis, N. K.; Freedman, R. S.; Marley, M. S.

2010-02-01

We compute models of the transmission spectra of planets HD 209458b, HD 189733b, and generic hot Jupiters. We examine the effects of temperature, surface gravity, and metallicity for the generic planets as a guide to understanding transmission spectra in general. We find that carbon dioxide absorption at 4.4 and 15 mum is prominent at high metallicity, and is a clear metallicity indicator. For HD 209458b and HD 189733b, we compute spectra for both one-dimensional and three-dimensional model atmospheres and examine the differences between them. The differences are usually small, but can be large if atmospheric temperatures are near important chemical abundance boundaries. The calculations for the three-dimensional atmospheres, and their comparison with data, serve as constraints on these dynamical models that complement the secondary eclipse and light curve data sets. For HD 209458b, even if TiO and VO gases are abundant on the dayside, their abundances can be considerably reduced on the cooler planetary limb. However, given the predicted limb temperatures and TiO abundances, the model's optical opacity is too high. For HD 189733b we find a good match with some infrared data sets and constrain the altitude of a postulated haze layer. For this planet, substantial differences can exist between the transmission spectra of the leading and trailing hemispheres, which are an excellent probe of carbon chemistry. In thermochemical equilibrium, the cooler leading hemisphere is methane-dominated, and the hotter trailing hemisphere is CO-dominated, but these differences may be eliminated by non-equilibrium chemistry due to vertical mixing. It may be possible to constrain the carbon chemistry of this planet, and its spatial variation, with James Webb Space Telescope.

19. Reduced Dynamic Models in Epithelial Transport

PubMed Central

Hernández, Julio A.

2013-01-01

Most models developed to represent transport across epithelia assume that the cell interior constitutes a homogeneous compartment, characterized by a single concentration value of the transported species. This conception differs significantly from the current view, in which the cellular compartment is regarded as a highly crowded media of marked structural heterogeneity. Can the finding of relatively simple dynamic properties of transport processes in epithelia be compatible with this complex structural conception of the cell interior? The purpose of this work is to contribute with one simple theoretical approach to answer this question. For this, the techniques of model reduction are utilized to obtain a two-state reduced model from more complex linear models of transcellular transport with a larger number of intermediate states. In these complex models, each state corresponds to the solute concentration in an intermediate intracellular compartment. In addition, the numerical studies reveal that it is possible to approximate a general two-state model under conditions where strict reduction of the complex models cannot be performed. These results contribute with arguments to reconcile the current conception of the cell interior as a highly complex medium with the finding of relatively simple dynamic properties of transport across epithelial cells. PMID:23533397

20. Development and Validation of a 3-Dimensional CFB Furnace Model

Vepsäläinen, Arl; Myöhänen, Karl; Hyppäneni, Timo; Leino, Timo; Tourunen, Antti

At Foster Wheeler, a three-dimensional CFB furnace model is essential part of knowledge development of CFB furnace process regarding solid mixing, combustion, emission formation and heat transfer. Results of laboratory and pilot scale phenomenon research are utilized in development of sub-models. Analyses of field-test results in industrial-scale CFB boilers including furnace profile measurements are simultaneously carried out with development of 3-dimensional process modeling, which provides a chain of knowledge that is utilized as feedback for phenomenon research. Knowledge gathered by model validation studies and up-to-date parameter databases are utilized in performance prediction and design development of CFB boiler furnaces. This paper reports recent development steps related to modeling of combustion and formation of char and volatiles of various fuel types in CFB conditions. Also a new model for predicting the formation of nitrogen oxides is presented. Validation of mixing and combustion parameters for solids and gases are based on test balances at several large-scale CFB boilers combusting coal, peat and bio-fuels. Field-tests including lateral and vertical furnace profile measurements and characterization of solid materials provides a window for characterization of fuel specific mixing and combustion behavior in CFB furnace at different loads and operation conditions. Measured horizontal gas profiles are projection of balance between fuel mixing and reactions at lower part of furnace and are used together with both lateral temperature profiles at bed and upper parts of furnace for determination of solid mixing and combustion model parameters. Modeling of char and volatile based formation of NO profiles is followed by analysis of oxidizing and reducing regions formed due lower furnace design and mixing characteristics of fuel and combustion airs effecting to formation ofNO furnace profile by reduction and volatile-nitrogen reactions. This paper presents

1. A Probabilistic Model for Reducing Medication Errors

PubMed Central

Nguyen, Phung Anh; Syed-Abdul, Shabbir; Iqbal, Usman; Hsu, Min-Huei; Huang, Chen-Ling; Li, Hsien-Chang; Clinciu, Daniel Livius; Jian, Wen-Shan; Li, Yu-Chuan Jack

2013-01-01

Background Medication errors are common, life threatening, costly but preventable. Information technology and automated systems are highly efficient for preventing medication errors and therefore widely employed in hospital settings. The aim of this study was to construct a probabilistic model that can reduce medication errors by identifying uncommon or rare associations between medications and diseases. Methods and Finding(s) Association rules of mining techniques are utilized for 103.5 million prescriptions from Taiwan’s National Health Insurance database. The dataset included 204.5 million diagnoses with ICD9-CM codes and 347.7 million medications by using ATC codes. Disease-Medication (DM) and Medication-Medication (MM) associations were computed by their co-occurrence and associations’ strength were measured by the interestingness or lift values which were being referred as Q values. The DMQs and MMQs were used to develop the AOP model to predict the appropriateness of a given prescription. Validation of this model was done by comparing the results of evaluation performed by the AOP model and verified by human experts. The results showed 96% accuracy for appropriate and 45% accuracy for inappropriate prescriptions, with a sensitivity and specificity of 75.9% and 89.5%, respectively. Conclusions We successfully developed the AOP model as an efficient tool for automatic identification of uncommon or rare associations between disease-medication and medication-medication in prescriptions. The AOP model helps to reduce medication errors by alerting physicians, improving the patients’ safety and the overall quality of care. PMID:24312659

2. A nonlinear manifold-based reduced order model for multiscale analysis of heterogeneous hyperelastic materials

Bhattacharjee, Satyaki; Matouš, Karel

2016-05-01

A new manifold-based reduced order model for nonlinear problems in multiscale modeling of heterogeneous hyperelastic materials is presented. The model relies on a global geometric framework for nonlinear dimensionality reduction (Isomap), and the macroscopic loading parameters are linked to the reduced space using a Neural Network. The proposed model provides both homogenization and localization of the multiscale solution in the context of computational homogenization. To construct the manifold, we perform a number of large three-dimensional simulations of a statistically representative unit cell using a parallel finite strain finite element solver. The manifold-based reduced order model is verified using common principles from the machine-learning community. Both homogenization and localization of the multiscale solution are demonstrated on a large three-dimensional example and the local microscopic fields as well as the homogenized macroscopic potential are obtained with acceptable engineering accuracy.

3. A New Method for Reducing Dimensional Variability of Extruded Hollow Sections

Baringbing, Henry Ako; Welo, Torgeir; Søvik, Odd Perry

2007-05-01

Crash boxes are one recent application example of aluminum extrusions in the automotive industry. A crash box is typically made by welding an extruded tube (tower) to a foot plate at one end, providing the mounting features towards the rail tip of the vehicle. When using fully automated welding processes, the exterior dimensions of the tower have to be within a tolerance of typically +/- 0.25 mm in order to provide consistent weld properties. However, the extrusion process commonly introduces dimensional variations exceeding those required for good weld quality. In order to avoid costly hydro-forming processes, a new mechanical calibration process has been developed. This method represents a means to achieve sufficient dimensional accuracy of the crash box tower prior to welding. A prototype die was made to validate the calibration process using alloy AA6063 T4 extrusions. Tensile tests were performed in order to determine material parameters. The geometry of each tower was carefully measured before and after forming to determine the dimensional capability of the calibration process. Statistical methods were combined with FEA simulations and analytical methods to establish surrogate models and response surfaces. The results show that the calibration process is an effective method for improving the dimensional accuracy of crash box profiles, providing significant improvements in dimensional capability. It is concluded that the methodology has a high industrial potential.

4. A New Method for Reducing Dimensional Variability of Extruded Hollow Sections

SciTech Connect

Baringbing, Henry Ako; Welo, Torgeir; Soevik, Odd Perry

2007-05-17

Crash boxes are one recent application example of aluminum extrusions in the automotive industry. A crash box is typically made by welding an extruded tube (tower) to a foot plate at one end, providing the mounting features towards the rail tip of the vehicle. When using fully automated welding processes, the exterior dimensions of the tower have to be within a tolerance of typically +/- 0.25 mm in order to provide consistent weld properties. However, the extrusion process commonly introduces dimensional variations exceeding those required for good weld quality. In order to avoid costly hydro-forming processes, a new mechanical calibration process has been developed. This method represents a means to achieve sufficient dimensional accuracy of the crash box tower prior to welding. A prototype die was made to validate the calibration process using alloy AA6063 T4 extrusions. Tensile tests were performed in order to determine material parameters. The geometry of each tower was carefully measured before and after forming to determine the dimensional capability of the calibration process. Statistical methods were combined with FEA simulations and analytical methods to establish surrogate models and response surfaces. The results show that the calibration process is an effective method for improving the dimensional accuracy of crash box profiles, providing significant improvements in dimensional capability. It is concluded that the methodology has a high industrial potential.

5. Adaptive h -refinement for reduced-order models: ADAPTIVE h -refinement for reduced-order models

DOE PAGES

Carlberg, Kevin T.

2014-11-05

Our work presents a method to adaptively refine reduced-order models a posteriori without requiring additional full-order-model solves. The technique is analogous to mesh-adaptive h-refinement: it enriches the reduced-basis space online by ‘splitting’ a given basis vector into several vectors with disjoint support. The splitting scheme is defined by a tree structure constructed offline via recursive k-means clustering of the state variables using snapshot data. This method identifies the vectors to split online using a dual-weighted-residual approach that aims to reduce error in an output quantity of interest. The resulting method generates a hierarchy of subspaces online without requiring large-scale operationsmore » or full-order-model solves. Furthermore, it enables the reduced-order model to satisfy any prescribed error tolerance regardless of its original fidelity, as a completely refined reduced-order model is mathematically equivalent to the original full-order model. Experiments on a parameterized inviscid Burgers equation highlight the ability of the method to capture phenomena (e.g., moving shocks) not contained in the span of the original reduced basis.« less

6. Dimensionality reduction for uncertainty quantification of nuclear engineering models.

SciTech Connect

Roderick, O.; Wang, Z.; Anitescu, M.

2011-01-01

The task of uncertainty quantification consists of relating the available information on uncertainties in the model setup to the resulting variation in the outputs of the model. Uncertainty quantification plays an important role in complex simulation models of nuclear engineering, where better understanding of uncertainty results in greater confidence in the model and in the improved safety and efficiency of engineering projects. In our previous work, we have shown that the effect of uncertainty can be approximated by polynomial regression with derivatives (PRD): a hybrid regression method that uses first-order derivatives of the model output as additional fitting conditions for a polynomial expansion. Numerical experiments have demonstrated the advantage of this approach over classical methods of uncertainty analysis: in precision, computational efficiency, or both. To obtain derivatives, we used automatic differentiation (AD) on the simulation code; hand-coded derivatives are acceptable for simpler models. We now present improvements on the method. We use a tuned version of the method of snapshots, a technique based on proper orthogonal decomposition (POD), to set up the reduced order representation of essential information on uncertainty in the model inputs. The automatically obtained sensitivity information is required to set up the method. Dimensionality reduction in combination with PRD allows analysis on a larger dimension of the uncertainty space (>100), at modest computational cost.

7. Evaluation of Reduced Power Spectra from Three-Dimensional k-Space

Saur, J.; von Papen, M.

2014-12-01

We present a new tool to evaluate one dimensional reduced power spectral densities (PSD) from arbitrary energy distributions in kk-space. This enables us to calculate the power spectra as they are measured in spacecraft frame for any given measurement geometry assuming Taylor's frozen-in approximation. It is possible to seperately calculate the diagonal elements of the spectral tensor and also to insert additional, non-turbulent energy in kk-space (e.g. mirror mode waves). Given a critically balanced turbulent cascade with k∥˜kα⊥k_\\|sim k_perp^alpha, we explore the implications on the spectral form of the PSD and the functional dependence of the spectral index κkappa on the field-to-flow angle θtheta between plasma flow and background magnetic field. We show that critically balanced turbulence develops a θtheta-independent cascade with the spectral slope of the perpendicular cascade κ(θ=90∘)kappa(theta{=}90^circ). This happens at frequencies f>fmaxf>f_mathrm{max}, where fmax(L,α,θ)f_mathrm{max}(L,alpha,theta) is a function of outer scale LL, critical balance exponent αalpha and field-to-flow angle θtheta. We also discuss potential damping terms acting on the kk-space distribution of energy and their effect on the PSD. Further, we show that the functional dependence κ(θ)kappa(theta) as found by textit{Horbury et al.} (2008) and textit{Chen et al.} (2010) can be explained with a damped critically balanced turbulence model.

8. Inverse regression-based uncertainty quantification algorithms for high-dimensional models: Theory and practice

Li, Weixuan; Lin, Guang; Li, Bing

2016-09-01

Many uncertainty quantification (UQ) approaches suffer from the curse of dimensionality, that is, their computational costs become intractable for problems involving a large number of uncertainty parameters. In these situations, the classic Monte Carlo often remains the preferred method of choice because its convergence rate O (n - 1 / 2), where n is the required number of model simulations, does not depend on the dimension of the problem. However, many high-dimensional UQ problems are intrinsically low-dimensional, because the variation of the quantity of interest (QoI) is often caused by only a few latent parameters varying within a low-dimensional subspace, known as the sufficient dimension reduction (SDR) subspace in the statistics literature. Motivated by this observation, we propose two inverse regression-based UQ algorithms (IRUQ) for high-dimensional problems. Both algorithms use inverse regression to convert the original high-dimensional problem to a low-dimensional one, which is then efficiently solved by building a response surface for the reduced model, for example via the polynomial chaos expansion. The first algorithm, which is for the situations where an exact SDR subspace exists, is proved to converge at rate O (n-1), hence much faster than MC. The second algorithm, which doesn't require an exact SDR, employs the reduced model as a control variate to reduce the error of the MC estimate. The accuracy gain could still be significant, depending on how well the reduced model approximates the original high-dimensional one. IRUQ also provides several additional practical advantages: it is non-intrusive; it does not require computing the high-dimensional gradient of the QoI; and it reports an error bar so the user knows how reliable the result is.

9. A Reduced Model for the Magnetorotational Instability

Jamroz, Ben; Julien, Keith; Knobloch, Edgar

2008-11-01

The magnetorotational instability is investigated within the shearing box approximation in the large Elsasser number regime. In this regime, which is of fundamental importance to astrophysical accretion disk theory, shear is the dominant source of energy, but the instability itself requires the presence of a weaker vertical magnetic field. Dissipative effects are weaker still. However, they are sufficiently large to permit a nonlinear feedback mechanism whereby the turbulent stresses generated by the MRI act on and modify the local background shear in the angular velocity profile. To date this response has been omitted in shearing box simulations and is captured by a reduced pde model derived here from the global MHD fluid equations using multiscale asymptotic perturbation theory. Results from numerical simulations of the reduced pde model indicate a linear phase of exponential growth followed by a nonlinear adjustment to algebraic growth and decay in the fluctuating quantities. Remarkably, the velocity and magnetic field correlations associated with these algebraic growth and decay laws conspire to achieve saturation of the angular momentum transport. The inclusion of subdominant ohmic dissipation arrests the algebraic growth of the fluctuations on a longer, dissipative time scale.

10. Three-dimensional effects for radio frequency antenna modeling

SciTech Connect

Carter, M.D.; Batchelor, D.B.; Stallings, D.C. )

1994-10-15

Electromagnetic field calculations for radio frequency (rf) antennas in two dimensions (2-D) neglect finite antenna length effects as well as the feeders leading to the main current strap. The 2-D calculations predict that the return currents in the sidewalls of the antenna structure depend strongly on the plasma parameters, but this prediction is suspect because of experimental evidence. To study the validity of the 2-D approximation, the Multiple Antenna Implementation System (MAntIS) has been used to perform three-dimensional (3-D) modeling of the power spectrum, plasma loading, and inductance for a relevant loop antenna design. Effects on antenna performance caused by feeders to the main current strap and conducting sidewalls are considered. The modeling shows that the feeders affect the launched power spectrum in an indirect way by forcing the driven rf current to return in the antenna structure rather than the plasma, as in the 2-D model. It has also been found that poloidal dependencies in the plasma impedance matrix can reduce the loading predicted from that predicted in the 2-D model. For some plasma parameters, the combined 3-D effects can lead to a reduction in the predicted loading by as much as a factor of 2 from that given by the 2-D model, even with end-effect corrections for the 2-D model.

11. Low-Dimensional Dynamical Models of Thermal Convection

NASA Technical Reports Server (NTRS)

Liakopoulos, Anthony

1996-01-01

A low-dimensional dynamic model for transitional buoyancy-driven flow in a differentially heated tall enclosure is presented. The full governing partial differential equations with the associated boundary conditions are solved by a spectral element method for a cavity of aspect ratio A=20. Proper orthogonal decomposition is applied to the oscillatory solution at Prandtl number Pr=P tau (omega) = 0.71 and Grashof number G tau (omega) = 3.2 x 10 (exp 4) to construct empirical eigenfunctions. Using the four most energetic empirical eigenfunctions for the velocity and temperature as basis functions and applying Galerkin's method, a reduced model consisting of eight nonlinear ordinary differential equations is obtained. Close to the 'design' conditions (P tau(omega) G tau(omega)), the low-order model (LOM) predictions are in excellent agreement with the predictions of the full model. In particular, the critical Grashof number at the onset of the first temporal flow instability (Hopf bifurcation) was well as the frequency and amplitude of oscillations at supercritical conditions are in excellent agreement with the predictions of the full model. Far from the 'design' conditions, the LOM predicts the existence of multiple stable steady solutions at large values of G tau, and a unique stable steady solution at small values of G tau, and exhibits hysteretic behavior that is qualitatively similar to that observed in direct numerical simulations based on the full model.

12. Reduced-order model based feedback control of the modified Hasegawa-Wakatani model

SciTech Connect

Goumiri, I. R.; Rowley, C. W.; Ma, Z.; Gates, D. A.; Krommes, J. A.; Parker, J. B.

2013-04-15

In this work, the development of model-based feedback control that stabilizes an unstable equilibrium is obtained for the Modified Hasegawa-Wakatani (MHW) equations, a classic model in plasma turbulence. First, a balanced truncation (a model reduction technique that has proven successful in flow control design problems) is applied to obtain a low dimensional model of the linearized MHW equation. Then, a model-based feedback controller is designed for the reduced order model using linear quadratic regulators. Finally, a linear quadratic Gaussian controller which is more resistant to disturbances is deduced. The controller is applied on the non-reduced, nonlinear MHW equations to stabilize the equilibrium and suppress the transition to drift-wave induced turbulence.

13. An Extensible Reduced Order Model Builder for Simulation and Modeling

SciTech Connect

2012-09-28

REVEAL is a software framework for building reduced order models (surrogate models) for high fidelity complex scientific simulations. REVEAL is designed to do reduced order modeling and sensitivity analysis for scientific simulations. REVEAL incorporates a range of sampling and regression methods. It provides complete user environment and is adaptable to new simulators, runs jobs on any computing platform of choice, automatically post processes simulation results and provides a range of data analysis tools. The software is generic and can easily be extended to incorporate new methods, simulators.

14. Computation of pair distribution functions and three-dimensional densities with a reduced variance principle

Borgis, Daniel; Assaraf, Roland; Rotenberg, Benjamin; Vuilleumier, Rodolphe

2013-12-01

No fancy statistical objects here, we go back to the computation of one of the most basic and fundamental quantities in the statistical mechanics of fluids, namely the pair distribution functions. Those functions are usually computed in molecular simulations by using histogram techniques. We show here that they can be estimated using a global information on the instantaneous forces acting on the particles, and that this leads to a reduced variance compared to the standard histogram estimators. The technique is extended successfully to the computation of three-dimensional solvent densities around tagged molecular solutes, quantities that are noisy and very long to converge, using histograms.

15. Error-Correcting 6/8 Modulation Code for Reducing Two-Dimensional Intersymbol Interference

Kim, Jinyoung; Lee, Jaejin

2011-09-01

We introduce error-correcting 6/8 modulation codes for reducing two-dimensional intersymbol interference in holographic data storage. The proposed modulation codes have a trellis-like structure in which the data is encoded, enabling their error-correcting capability, and are more complex than previous error-correcting 4/6 modulation codes because of increasing number of symbols and states compared to the conventional 6/8 modulation codes. The bit error rate (BER) performances are improved for the proposed modulation codes compared with those for 4/6 modulation codes, moreover the proposed codes make 12.5% times more efficient.

16. A Five Dimensional Model for Educating the Net Generation

ERIC Educational Resources Information Center

Beyers, Ronald Noel

2009-01-01

This paper proposes a multi-dimensional concept model of an ICT enabled classroom to highlight potential similarities and differences between where teachers perceive themselves relative to their learners. Some teachers and learners may be at the two dimensional text-book level, while others are operating in at a globalization level. Being armed…

17. Three-dimensional model for subsurface transport and biodegradation

SciTech Connect

1998-04-01

This paper describes and demonstrates a numerical model for subsurface solute transport with aerobic and sequential anaerobic biodegradation. The model can depict multiple constituents in a three-dimensional (3D), anisotropic, heterogeneous domain. Hydrocarbon contaminants are simulated as electron donors for microbial growth, and available electron acceptors (EAs) may be utilized simultaneously or in the following sequence: O{sub 2}, NO{sub 3}{sup {minus}}, Mn(IV), Fe(III), SO{sub 4}{sup 2{minus}}, and CO{sub 2}. The model can account for Mn(II), Fe(II), H{sub w}S, CH{sub 4}, and a user-defined nitrogenous compound as products of biodegradation. Biodegradation of each hydrocarbon substrate follows Monod kinetics, modified to include the effects of EA and nutrient availability. Inhibition functions allow any EA to inhibit the utilization of all other EAs that provide less energy to the microbes. Microbial biomass is conceptualized as scattered microcolonies attached to the porous medium. The model assumes that interphase diffusion limitations to microbial growth are negligible and no geometrical parameters are assigned to the colonies. The behavior of the model was demonstrated using simple, hypothetical test cases. Transport of a biodegradable hydrocarbon was compared to a nonbiodegradable tracer in a 3D, hypothetical domain. Anaerobic biodecay significantly reduced predicted contaminant concentrations and travel distance. Biodegradation of the total contaminant mass depends on EA availability and did not follow first-order kinetics.

18. Shape memory polymers: three-dimensional isotropic modeling

Balogun, Olaniyi; Mo, Changki

2014-04-01

This paper presents a comprehensive three-dimensional isotropic numerical simulation for a thermo-mechanical constitutive model of shape memory polymers (SMPs). In order to predict the thermo-mechanical behavior of SMPs, a one-dimensional rheological thermo-mechanical constitutive model is adopted, translated into a three-dimensional form and a time discrete form of the three-dimensional model is then presented. Numerical simulation of this model was developed using the UMAT subroutine capabilities of the finite element software ABAQUS. Evolution of the analysis was conducted by making use of the backward difference scheme, which was applied to all quantities within the model, including the material properties. A comparison of the numerical simulation results was carried out with the available experimental data. Numerical simulation results clearly exhibit the thermo-mechanical properties of the material which include shape fixity, shape recovery, and recovery stress. Finally, a prediction for the transverse and shear directions of the material is presented.

19. Exact solution of three-dimensional transport problems using one-dimensional models. [in semiconductor devices

NASA Technical Reports Server (NTRS)

Misiakos, K.; Lindholm, F. A.

1986-01-01

Several parameters of certain three-dimensional semiconductor devices including diodes, transistors, and solar cells can be determined without solving the actual boundary-value problem. The recombination current, transit time, and open-circuit voltage of planar diodes are emphasized here. The resulting analytical expressions enable determination of the surface recombination velocity of shallow planar diodes. The method involves introducing corresponding one-dimensional models having the same values of these parameters.

20. Generalized Reduced Order Modeling of Aeroservoelastic Systems

Gariffo, James Michael

Transonic aeroelastic and aeroservoelastic (ASE) modeling presents a significant technical and computational challenge. Flow fields with a mixture of subsonic and supersonic flow, as well as moving shock waves, can only be captured through high-fidelity CFD analysis. With modern computing power, it is realtively straightforward to determine the flutter boundary for a single structural configuration at a single flight condition, but problems of larger scope remain quite costly. Some such problems include characterizing a vehicle's flutter boundary over its full flight envelope, optimizing its structural weight subject to aeroelastic constraints, and designing control laws for flutter suppression. For all of these applications, reduced-order models (ROMs) offer substantial computational savings. ROM techniques in general have existed for decades, and the methodology presented in this dissertation builds on successful previous techniques to create a powerful new scheme for modeling aeroelastic systems, and predicting and interpolating their transonic flutter boundaries. In this method, linear ASE state-space models are constructed from modal structural and actuator models coupled to state-space models of the linearized aerodynamic forces through feedback loops. Flutter predictions can be made from these models through simple eigenvalue analysis of their state-transition matrices for an appropriate set of dynamic pressures. Moreover, this analysis returns the frequency and damping trend of every aeroelastic branch. In contrast, determining the critical dynamic pressure by direct time-marching CFD requires a separate run for every dynamic pressure being analyzed simply to obtain the trend for the critical branch. The present ROM methodology also includes a new model interpolation technique that greatly enhances the benefits of these ROMs. This enables predictions of the dynamic behavior of the system for flight conditions where CFD analysis has not been explicitly

1. A constrained reduced-dimensionality search algorithm to follow chemical reactions on potential energy surfaces

Lankau, Timm; Yu, Chin-Hui

2013-06-01

A constrained reduced-dimensionality algorithm can be used to efficiently locate transition states and products in reactions involving conformational changes. The search path (SP) is constructed stepwise from linear combinations of a small set of manually chosen internal coordinates, namely the predictors. The majority of the internal coordinates, the correctors, are optimized at every step of the SP to minimize the total energy of the system so that the path becomes a minimum energy path connecting products and transition states with the reactants. Problems arise when the set of predictors needs to include weak coordinates, for example, dihedral angles, as well as strong ones such as bond distances. Two principal constraining methods for the weak coordinates are proposed to mend this situation: static and dynamic constraints. Dynamic constraints are automatically activated and revoked depending on the state of the weak coordinates among the predictors, while static ones require preset control factors and act permanently. All these methods enable the successful application (4 reactions are presented involving cyclohexane, alanine dipeptide, trimethylsulfonium chloride, and azafulvene) of the reduced dimensionality method to reactions where the reaction path covers large conformational changes in addition to the formation/breaking of chemical bonds. Dynamic constraints are found to be the most efficient method as they require neither additional information about the geometry of the transition state nor fine tuning of control parameters.

2. Model of a Negatively Curved Two-Dimensional Space.

ERIC Educational Resources Information Center

Eckroth, Charles A.

1995-01-01

Describes the construction of models of two-dimensional surfaces with negative curvature that are used to illustrate differences in the triangle sum rule for the various Big Bang Theories of the universe. (JRH)

3. Spectral analysis of two-dimensional Bose-Hubbard models

Fischer, David; Hoffmann, Darius; Wimberger, Sandro

2016-04-01

One-dimensional Bose-Hubbard models are well known to obey a transition from regular to quantum-chaotic spectral statistics. We are extending this concept to relatively simple two-dimensional many-body models. Also in two dimensions a transition from regular to chaotic spectral statistics is found and discussed. In particular, we analyze the dependence of the spectral properties on the bond number of the two-dimensional lattices and the applied boundary conditions. For maximal connectivity, the systems behave most regularly in agreement with the applicability of mean-field approaches in the limit of many nearest-neighbor couplings at each site.

4. Two-Dimensional Intercomparison of Stratospheric Models

NASA Technical Reports Server (NTRS)

Jackman, Charles H. (Editor); Seals, Robert K., Jr. (Editor); Prather, Michael J. (Editor)

1989-01-01

A detailed record is provided for the examination of fundamental differences in photochemistry and transport among atmospheric models. The results of 16 different modeling groups are presented for several model experiments.

5. Applications of three-dimensionally scanned models in orthodontics.

PubMed

Cha, B K; Choi, J I; Jost-Brinkmann, P G; Jeong, Y M

2007-01-01

The purpose of this study was to investigate clinical applications of the three-dimensional reverse engineering technologies for the analysis of orthodontic models. The measuring accuracy and the process of the 3D model scanning technique were evaluated with respect to linear, surface and volumetric parameters. Orthodontically induced dentoalveolar changes, which have been traditionally evaluated by cephalometric analysis, were assessed by the registration function of Rapidform 2002, a 3D-reverse modeling software in scanned maxillary casts. Three-dimensional digital models are valuable alternatives to conventional casts for model analysis and also yield information which could previously be gathered only by cephalometric superimposition.

6. Improving a regional model using reduced complexity and parameter estimation

USGS Publications Warehouse

Kelson, Victor A.; Hunt, Randall J.; Haitjema, Henk M.

2002-01-01

The availability of powerful desktop computers and graphical user interfaces for ground water flow models makes possible the construction of ever more complex models. A proposed copper-zinc sulfide mine in northern Wisconsin offers a unique case in which the same hydrologic system has been modeled using a variety of techniques covering a wide range of sophistication and complexity. Early in the permitting process, simple numerical models were used to evaluate the necessary amount of water to be pumped from the mine, reductions in streamflow, and the drawdowns in the regional aquifer. More complex models have subsequently been used in an attempt to refine the predictions. Even after so much modeling effort, questions regarding the accuracy and reliability of the predictions remain. We have performed a new analysis of the proposed mine using the two-dimensional analytic element code GFLOW coupled with the nonlinear parameter estimation code UCODE. The new model is parsimonious, containing fewer than 10 parameters, and covers a region several times larger in areal extent than any of the previous models. The model demonstrates the suitability of analytic element codes for use with parameter estimation codes. The simplified model results are similar to the more complex models; predicted mine inflows and UCODE-derived 95% confidence intervals are consistent with the previous predictions. More important, the large areal extent of the model allowed us to examine hydrological features not included in the previous models, resulting in new insights about the effects that far-field boundary conditions can have on near-field model calibration and parameterization. In this case, the addition of surface water runoff into a lake in the headwaters of a stream while holding recharge constant moved a regional ground watershed divide and resulted in some of the added water being captured by the adjoining basin. Finally, a simple analytical solution was used to clarify the GFLOW model

7. A new algorithm for high-dimensional uncertainty quantification based on dimension-adaptive sparse grid approximation and reduced basis methods

Chen, Peng; Quarteroni, Alfio

2015-10-01

In this work we develop an adaptive and reduced computational algorithm based on dimension-adaptive sparse grid approximation and reduced basis methods for solving high-dimensional uncertainty quantification (UQ) problems. In order to tackle the computational challenge of "curse of dimensionality" commonly faced by these problems, we employ a dimension-adaptive tensor-product algorithm [16] and propose a verified version to enable effective removal of the stagnation phenomenon besides automatically detecting the importance and interaction of different dimensions. To reduce the heavy computational cost of UQ problems modelled by partial differential equations (PDE), we adopt a weighted reduced basis method [7] and develop an adaptive greedy algorithm in combination with the previous verified algorithm for efficient construction of an accurate reduced basis approximation. The efficiency and accuracy of the proposed algorithm are demonstrated by several numerical experiments.

8. Accelerated gravitational wave parameter estimation with reduced order modeling.

PubMed

Canizares, Priscilla; Field, Scott E; Gair, Jonathan; Raymond, Vivien; Smith, Rory; Tiglio, Manuel

2015-02-20

Inferring the astrophysical parameters of coalescing compact binaries is a key science goal of the upcoming advanced LIGO-Virgo gravitational-wave detector network and, more generally, gravitational-wave astronomy. However, current approaches to parameter estimation for these detectors require computationally expensive algorithms. Therefore, there is a pressing need for new, fast, and accurate Bayesian inference techniques. In this Letter, we demonstrate that a reduced order modeling approach enables rapid parameter estimation to be performed. By implementing a reduced order quadrature scheme within the LIGO Algorithm Library, we show that Bayesian inference on the 9-dimensional parameter space of nonspinning binary neutron star inspirals can be sped up by a factor of ∼30 for the early advanced detectors' configurations (with sensitivities down to around 40 Hz) and ∼70 for sensitivities down to around 20 Hz. This speedup will increase to about 150 as the detectors improve their low-frequency limit to 10 Hz, reducing to hours analyses which could otherwise take months to complete. Although these results focus on interferometric gravitational wave detectors, the techniques are broadly applicable to any experiment where fast Bayesian analysis is desirable.

9. Accelerated Gravitational Wave Parameter Estimation with Reduced Order Modeling

Canizares, Priscilla; Field, Scott E.; Gair, Jonathan; Raymond, Vivien; Smith, Rory; Tiglio, Manuel

2015-02-01

Inferring the astrophysical parameters of coalescing compact binaries is a key science goal of the upcoming advanced LIGO-Virgo gravitational-wave detector network and, more generally, gravitational-wave astronomy. However, current approaches to parameter estimation for these detectors require computationally expensive algorithms. Therefore, there is a pressing need for new, fast, and accurate Bayesian inference techniques. In this Letter, we demonstrate that a reduced order modeling approach enables rapid parameter estimation to be performed. By implementing a reduced order quadrature scheme within the LIGO Algorithm Library, we show that Bayesian inference on the 9-dimensional parameter space of nonspinning binary neutron star inspirals can be sped up by a factor of ˜30 for the early advanced detectors' configurations (with sensitivities down to around 40 Hz) and ˜70 for sensitivities down to around 20 Hz. This speedup will increase to about 150 as the detectors improve their low-frequency limit to 10 Hz, reducing to hours analyses which could otherwise take months to complete. Although these results focus on interferometric gravitational wave detectors, the techniques are broadly applicable to any experiment where fast Bayesian analysis is desirable.

10. Dimensional reduction of the master equation for stochastic chemical networks: The reduced-multiplane method.

PubMed

Barzel, Baruch; Biham, Ofer; Kupferman, Raz; Lipshtat, Azi; Zait, Amir

2010-08-01

Chemical reaction networks which exhibit strong fluctuations are common in microscopic systems in which reactants appear in low copy numbers. The analysis of these networks requires stochastic methods, which come in two forms: direct integration of the master equation and Monte Carlo simulations. The master equation becomes infeasible for large networks because the number of equations increases exponentially with the number of reactive species. Monte Carlo methods, which are more efficient in integrating over the exponentially large phase space, also become impractical due to the large amounts of noisy data that need to be stored and analyzed. The recently introduced multiplane method [A. Lipshtat and O. Biham, Phys. Rev. Lett. 93, 170601 (2004)] is an efficient framework for the stochastic analysis of large reaction networks. It is a dimensional reduction method, based on the master equation, which provides a dramatic reduction in the number of equations without compromising the accuracy of the results. The reduction is achieved by breaking the network into a set of maximal fully connected subnetworks (maximal cliques). A separate master equation is written for the reduced probability distribution associated with each clique, with suitable coupling terms between them. This method is highly efficient in the case of sparse networks, in which the maximal cliques tend to be small. However, in dense networks some of the cliques may be rather large and the dimensional reduction is not as effective. Furthermore, the derivation of the multiplane equations from the master equation is tedious and difficult. Here we present the reduced-multiplane method in which the maximal cliques are broken down to the fundamental two-vertex cliques. The number of equations is further reduced, making the method highly efficient even for dense networks. Moreover, the equations take a simpler form, which can be easily constructed using a diagrammatic procedure, for any desired network

11. Supersymmetric models with higher dimensional operators

Antoniadis, I.; Dudas, E.; Ghilencea, D. M.

2008-03-01

In 4D renormalisable theories, integrating out massive states generates in the low energy effective action higher dimensional operators (derivative or otherwise). Using a superfield language it is shown that a 4D N=1 supersymmetric theory with higher derivative operators in either the Kahler or the superpotential part of the Lagrangian and with an otherwise arbitrary superpotential, is equivalent to a 4D N=1 theory of second order (i.e. without higher derivatives) with additional superfields and renormalised interactions. We provide examples where a free theory with trivial supersymmetry breaking provided by a linear superpotential becomes, in the presence of higher derivatives terms and in the second order version, a non-trivial interactive one with spontaneous supersymmetry breaking. The couplings of the equivalent theory acquire a threshold correction through their dependence on the scale of the higher dimensional operator(s). The scalar potential in the second order theory is not necessarily positive definite, and one can in principle have a vanishing potential with broken supersymmetry. We provide an application to MSSM and argue that at tree-level and for a mass scale associated to a higher derivative term in the TeV range, the Higgs mass can be lifted above the current experimental limits.

12. Three Dimensional Vapor Intrusion Modeling: Model Validation and Uncertainty Analysis

Akbariyeh, S.; Patterson, B.; Rakoczy, A.; Li, Y.

2013-12-01

Volatile organic chemicals (VOCs), such as chlorinated solvents and petroleum hydrocarbons, are prevalent groundwater contaminants due to their improper disposal and accidental spillage. In addition to contaminating groundwater, VOCs may partition into the overlying vadose zone and enter buildings through gaps and cracks in foundation slabs or basement walls, a process termed vapor intrusion. Vapor intrusion of VOCs has been recognized as a detrimental source for human exposures to potential carcinogenic or toxic compounds. The simulation of vapor intrusion from a subsurface source has been the focus of many studies to better understand the process and guide field investigation. While multiple analytical and numerical models were developed to simulate the vapor intrusion process, detailed validation of these models against well controlled experiments is still lacking, due to the complexity and uncertainties associated with site characterization and soil gas flux and indoor air concentration measurement. In this work, we present an effort to validate a three-dimensional vapor intrusion model based on a well-controlled experimental quantification of the vapor intrusion pathways into a slab-on-ground building under varying environmental conditions. Finally, a probabilistic approach based on Monte Carlo simulations is implemented to determine the probability distribution of indoor air concentration based on the most uncertain input parameters.

13. Bacteriophage Infection of Model Metal Reducing Bacteria

Weber, K. A.; Bender, K. S.; Gandhi, K.; Coates, J. D.

2008-12-01

filtered through a 0.22 μ m sterile nylon filter, stained with phosphotungstic acid (PTA), and examined using transmission electron microscopy (TEM). TEM revealed the presence of viral like particles in the culture exposed to mytomycin C. Together these results suggest an active infection with a lysogenic bacteriophage in the model metal reducing bacteria, Geobacter spp., which could affect metabolic physiology and subsequently metal reduction in environmental systems.

14. Two-dimensional Chebyshev pseudospectral modelling of cardiac propagation.

PubMed

Zhan, Z; Ng, K T

2000-05-01

Bidomain or monodomain modelling has been used widely to study various issues related to action potential propagation in cardiac tissue. In most of these previous studies, the finite difference method is used to solve the partial differential equations associated with the model. Though the finite difference approach has provided useful insight in many cases, adequate discretisation of cardiac tissue with realistic dimensions often requires a large number of nodes, making the numerical solution process difficult or impossible with available computer resources. Here, a Chebyshev pseudospectral method is presented that allows a significant reduction in the number of nodes required for a given solution accuracy. The new method is used to solve the governing nonlinear partial differential equation for the monodomain model representing a two-dimensional homogeneous sheet of cardiac tissue. The unknown transmembrane potential is expanded in terms of Chebyshev polynomial trial functions and the equation is enforced at the Gauss-Lobatto grid points. Spatial derivatives are obtained using the fast Fourier transform and the solution is advanced in time using an explicit technique. Numerical results indicate that the pseudospectral approach allows the number of nodes to be reduced by a factor of sixteen, while still maintaining the same error performance. This makes it possible to perform simulations with the same accuracy using about twelve times less CPU time and memory.

15. The Long Decay Model of One-Dimensional Projectile Motion

ERIC Educational Resources Information Center

Lattery, Mark Joseph

2008-01-01

This article introduces a research study on student model formation and development in introductory mechanics. As a point of entry, I present a detailed analysis of the Long Decay Model of one-dimensional projectile motion. This model has been articulated by Galileo ("in De Motu") and by contemporary students. Implications for instruction are…

16. One-Dimensional Ising Model with "k"-Spin Interactions

ERIC Educational Resources Information Center

Fan, Yale

2011-01-01

We examine a generalization of the one-dimensional Ising model involving interactions among neighbourhoods of "k" adjacent spins. The model is solved by exploiting a connection to an interesting computational problem that we call ""k"-SAT on a ring", and is shown to be equivalent to the nearest-neighbour Ising model in the absence of an external…

17. Model-based image reconstruction for four-dimensional PET

SciTech Connect

Li Tianfang; Thorndyke, Brian; Schreibmann, Eduard; Yang Yong; Xing Lei

2006-05-15

Positron emission tonography (PET) is useful in diagnosis and radiation treatment planning for a variety of cancers. For patients with cancers in thoracic or upper abdominal region, the respiratory motion produces large distortions in the tumor shape and size, affecting the accuracy in both diagnosis and treatment. Four-dimensional (4D) (gated) PET aims to reduce the motion artifacts and to provide accurate measurement of the tumor volume and the tracer concentration. A major issue in 4D PET is the lack of statistics. Since the collected photons are divided into several frames in the 4D PET scan, the quality of each reconstructed frame degrades as the number of frames increases. The increased noise in each frame heavily degrades the quantitative accuracy of the PET imaging. In this work, we propose a method to enhance the performance of 4D PET by developing a new technique of 4D PET reconstruction with incorporation of an organ motion model derived from 4D-CT images. The method is based on the well-known maximum-likelihood expectation-maximization (ML-EM) algorithm. During the processes of forward- and backward-projection in the ML-EM iterations, all projection data acquired at different phases are combined together to update the emission map with the aid of deformable model, the statistics is therefore greatly improved. The proposed algorithm was first evaluated with computer simulations using a mathematical dynamic phantom. Experiment with a moving physical phantom was then carried out to demonstrate the accuracy of the proposed method and the increase of signal-to-noise ratio over three-dimensional PET. Finally, the 4D PET reconstruction was applied to a patient case.

18. Reducing artifacts in one-dimensional Fourier velocity encoding for fast and pulsatile flow.

PubMed

Lee, Daeho; Santos, Juan M; Hu, Bob S; Pauly, John M; Kerr, Adam B

2012-12-01

When evaluating the severity of valvular stenosis, the peak velocity of the blood flow is routinely used to estimate the transvalvular pressure gradient. One-dimensional Fourier velocity encoding effectively detects the peak velocity with an ungated time series of spatially resolved velocity spectra in real time. However, measurement accuracy can be degraded by the pulsatile and turbulent nature of stenotic flow and the existence of spatially varying off-resonance. In this work, we investigate the feasibility of improving the peak velocity detection capability of one-dimensional Fourier velocity encoding for stenotic flow using a novel echo-shifted interleaved readout combined with a variable-density circular k-space trajectory. The shorter echo and readout times of the echo-shifted interleaved acquisitions are designed to reduce sensitivity to off-resonance. Preliminary results from limited phantom and in vivo results also indicate that some artifacts from pulsatile flow appear to be suppressed when using this trajectory compared to conventional single-shot readouts, suggesting that peak velocity detection may be improved. The efficiency of the new trajectory improves the temporal and spatial resolutions. To realize the proposed readout, a novel multipoint-traversing algorithm is introduced for flexible and automated gradient-waveform design.

19. Application of N-Doped Three-Dimensional Reduced Graphene Oxide Aerogel to Thin Film Loudspeaker.

PubMed

Kim, Choong Sun; Lee, Kyung Eun; Lee, Jung-Min; Kim, Sang Ouk; Cho, Byung Jin; Choi, Jung-Woo

2016-08-31

We built a thermoacoustic loudspeaker employing N-doped three-dimensional reduced graphene oxide aerogel (N-rGOA) based on a simple template-free fabrication method. A two-step fabrication process, which includes freeze-drying and reduction/doping, was used to realize a three-dimensional, freestanding, and porous graphene-based loudspeaker, whose macroscopic structure can be easily modulated. The simplified fabrication process also allows the control of structural properties of the N-rGOAs, including density and area. Taking advantage of the facile fabrication process, we fabricated and analyzed thermoacoustic loudspeakers with different structural properties. The anlayses showed that a N-rGOA with lower density and larger area can produce a higher sound pressure level (SPL). Furthermore, the resistance of the proposed loudspeaker can be easily controlled through heteroatom doping, thereby helping to generate higher SPL per unit driving voltage. Our success in constructing an array of optimized N-rGOAs able to withstand input power as high as 40 W demonstrates that a practical thermoacoustic loudspeaker can be fabricated using the proposed mass-producible solution-based process.

20. Reduced dimensionality 3D HNCAN for unambiguous HN, CA and N assignment in proteins

Rout, Manoj Kumar; Mishra, Pushpa; Atreya, Hanudatta S.; Hosur, Ramakrishna V.

2012-03-01

We present here an improvisation of HNN (Panchal, Bhavesh et al., 2001) called RD 3D HNCAN for backbone (HN, CA and 15N) assignment in both folded and unfolded proteins. This is a reduced dimensionality experiment which employs CA chemical shifts to improve dispersion. Distinct positive and negative peak patterns of various triplet segments along the polypeptide chain observed in HNN are retained and these provide start and check points for the sequential walk. Because of co-incrementing of CA and 15N, peaks along one of the dimensions appear at sums and differences of the CA and 15N chemical shifts. This changes the backbone assignment protocol slightly and we present this in explicit detail. The performance of the experiment has been demonstrated using Ubiquitin and Plasmodium falciparum P2 proteins. The experiment is particularly valuable when two neighboring amino acid residues have nearly identical backbone 15N chemical shifts.

1. The problem of dimensional instability in airfoil models for cryogenic wind tunnels

NASA Technical Reports Server (NTRS)

Wigley, D. A.

1982-01-01

The problem of dimensional instability in airfoil models for cryogenic wind tunnels is discussed in terms of the various mechanisms that can be responsible. The interrelationship between metallurgical structure and possible dimensional instability in cryogenic usage is discussed for those steel alloys of most interest for wind tunnel model construction at this time. Other basic mechanisms responsible for setting up residual stress systems are discussed, together with ways in which their magnitude may be reduced by various elevated or low temperature thermal cycles. A standard specimen configuration is proposed for use in experimental investigations into the effects of machining, heat treatment, and other variables that influence the dimensional stability of the materials of interest. A brief classification of various materials in terms of their metallurgical structure and susceptability to dimensional instability is presented.

2. Recent Progress in GW-based Methods for Excited-State Calculations of Reduced Dimensional Systems

2015-03-01

Ab initio calculations of excited-state phenomena within the GW and GW-Bethe-Salpeter equation (GW-BSE) approaches allow one to accurately study the electronic and optical properties of various materials, including systems with reduced dimensionality. However, several challenges arise when dealing with complicated nanostructures where the electronic screening is strongly spatially and directionally dependent. In this talk, we discuss some recent developments to address these issues. First, we turn to the slow convergence of quasiparticle energies and exciton binding energies with respect to k-point sampling. This is very effectively dealt with using a new hybrid sampling scheme, which results in savings of several orders of magnitude in computation time. A new ab initio method is also developed to incorporate substrate screening into GW and GW-BSE calculations. These two methods have been applied to mono- and few-layer MoSe2, and yielded strong environmental dependent behaviors in good agreement with experiment. Other issues that arise in confined systems and materials with reduced dimensionality, such as the effect of the Tamm-Dancoff approximation to GW-BSE, and the calculation of non-radiative exciton lifetime, are also addressed. These developments have been efficiently implemented and successfully applied to real systems in an ab initio framework using the BerkeleyGW package. I would like to acknowledge collaborations with Diana Y. Qiu, Steven G. Louie, Meiyue Shao, Chao Yang, and the experimental groups of M. Crommie and F. Wang. This work was supported by Department of Energy under Contract No. DE-AC02-05CH11231 and by National Science Foundation under Grant No. DMR10-1006184.

3. Numerical Modeling of Three-Dimensional Confined Flows

NASA Technical Reports Server (NTRS)

Greywall, M. S.

1981-01-01

A three dimensional confined flow model is presented. The flow field is computed by calculating velocity and enthalpy along a set of streamlines. The finite difference equations are obtained by applying conservation principles to streamtubes constructed around the chosen streamlines. With appropriate substitutions for the body force terms, the approach computes three dimensional magnetohydrodynamic channel flows. A listing of a computer code, based on this approach is presented in FORTRAN IV language. The code computes three dimensional compressible viscous flow through a rectangular duct, with the duct cross section specified along the axis.

4. Effects of confinement and external fields on structure and transport in colloidal dispersions in reduced dimensionality.

PubMed

Wilms, D; Deutschländer, S; Siems, U; Franzrahe, K; Henseler, P; Keim, P; Schwierz, N; Virnau, P; Binder, K; Maret, G; Nielaba, P

2012-11-21

In this work, we focus on low-dimensional colloidal model systems, via simulation studies and also some complementary experiments, in order to elucidate the interplay between phase behavior, geometric structures and transport properties. In particular, we try to investigate the (nonlinear!) response of these very soft colloidal systems to various perturbations: uniform and uniaxial pressure, laser fields, shear due to moving boundaries and randomly quenched disorder. We study ordering phenomena on surfaces or in monolayers by Monte Carlo computer simulations of binary hard-disk mixtures, the influence of a substrate being modeled by an external potential. Weak external fields allow a controlled tuning of the miscibility of the mixture. We discuss the laser induced de-mixing for the three different possible couplings to the external potential. The structural behavior of hard spheres interacting with repulsive screened Coulomb or dipolar interaction in 2D and 3D narrow constrictions is investigated using Brownian dynamics simulations. Due to misfits between multiples of the lattice parameter and the channel widths, a variety of ordered and disordered lattice structures have been observed. The resulting local lattice structures and defect probabilities are studied for various cross sections. The influence of a self-organized order within the system is reflected in the velocity of the particles and their diffusive behavior. Additionally, in an experimental system of dipolar colloidal particles confined by gravity on a solid substrate we investigate the effect of pinning on the dynamics of a two-dimensional colloidal liquid. This work contains sections reviewing previous work by the authors as well as new, unpublished results. Among the latter are detailed studies of the phase boundaries of the de-mixing regime in binary systems in external light fields, configurations for shear induced effects at structured walls, studies on the effect of confinement on the structures

5. Stochastic reduced order models for inverse problems under uncertainty

PubMed Central

Warner, James E.; Aquino, Wilkins; Grigoriu, Mircea D.

2014-01-01

This work presents a novel methodology for solving inverse problems under uncertainty using stochastic reduced order models (SROMs). Given statistical information about an observed state variable in a system, unknown parameters are estimated probabilistically through the solution of a model-constrained, stochastic optimization problem. The point of departure and crux of the proposed framework is the representation of a random quantity using a SROM - a low dimensional, discrete approximation to a continuous random element that permits e cient and non-intrusive stochastic computations. Characterizing the uncertainties with SROMs transforms the stochastic optimization problem into a deterministic one. The non-intrusive nature of SROMs facilitates e cient gradient computations for random vector unknowns and relies entirely on calls to existing deterministic solvers. Furthermore, the method is naturally extended to handle multiple sources of uncertainty in cases where state variable data, system parameters, and boundary conditions are all considered random. The new and widely-applicable SROM framework is formulated for a general stochastic optimization problem in terms of an abstract objective function and constraining model. For demonstration purposes, however, we study its performance in the specific case of inverse identification of random material parameters in elastodynamics. We demonstrate the ability to efficiently recover random shear moduli given material displacement statistics as input data. We also show that the approach remains effective for the case where the loading in the problem is random as well. PMID:25558115

6. Stochastic reduced order models for inverse problems under uncertainty.

PubMed

Warner, James E; Aquino, Wilkins; Grigoriu, Mircea D

2015-03-01

This work presents a novel methodology for solving inverse problems under uncertainty using stochastic reduced order models (SROMs). Given statistical information about an observed state variable in a system, unknown parameters are estimated probabilistically through the solution of a model-constrained, stochastic optimization problem. The point of departure and crux of the proposed framework is the representation of a random quantity using a SROM - a low dimensional, discrete approximation to a continuous random element that permits e cient and non-intrusive stochastic computations. Characterizing the uncertainties with SROMs transforms the stochastic optimization problem into a deterministic one. The non-intrusive nature of SROMs facilitates e cient gradient computations for random vector unknowns and relies entirely on calls to existing deterministic solvers. Furthermore, the method is naturally extended to handle multiple sources of uncertainty in cases where state variable data, system parameters, and boundary conditions are all considered random. The new and widely-applicable SROM framework is formulated for a general stochastic optimization problem in terms of an abstract objective function and constraining model. For demonstration purposes, however, we study its performance in the specific case of inverse identification of random material parameters in elastodynamics. We demonstrate the ability to efficiently recover random shear moduli given material displacement statistics as input data. We also show that the approach remains effective for the case where the loading in the problem is random as well.

7. Numerical modeling of two-dimensional confined flows

NASA Technical Reports Server (NTRS)

Greywall, M. S.

1979-01-01

A numerical model of two-dimensional confined flows is presented. The flow in the duct is partitioned into finite streams. The difference equations are then obtained by applying conservation principles directly to the individual streams. A listing of a computer code based on this approach in FORTRAN 4 language is presented. The code computes two dimensional compressible turbulent flows in ducts when the duct area along the flow is specified and the pressure gradient is unknown.

8. One-dimensional hydrodynamic model generating a turbulent cascade

Matsumoto, Takeshi; Sakajo, Takashi

2016-05-01

As a minimal mathematical model generating cascade analogous to that of the Navier-Stokes turbulence in the inertial range, we propose a one-dimensional partial-differential-equation model that conserves the integral of the squared vorticity analog (enstrophy) in the inviscid case. With a large-scale random forcing and small viscosity, we find numerically that the model exhibits the enstrophy cascade, the broad energy spectrum with a sizable correction to the dimensional-analysis prediction, peculiar intermittency, and self-similarity in the dynamical system structure.

9. Bootstrapping Critical Ising Model on Three Dimensional Real Projective Space.

PubMed

Nakayama, Yu

2016-04-08

Given conformal data on a flat Euclidean space, we use crosscap conformal bootstrap equations to numerically solve the Lee-Yang model as well as the critical Ising model on a three dimensional real projective space. We check the rapid convergence of our bootstrap program in two dimensions from the exact solutions available. Based on the comparison, we estimate that our systematic error on the numerically solved one-point functions of the critical Ising model on a three dimensional real projective space is less than 1%. Our method opens up a novel way to solve conformal field theories on nontrivial geometries.

10. [Research on monitoring mechanical wear state based on oil spectrum multi-dimensional time series model].

PubMed

Xu, Chao; Zhang, Pei-lin; Ren, Guo-quan; Li, Bing; Yang, Ning

2010-11-01

A new method using oil atomic spectrometric analysis technology to monitor the mechanical wear state was proposed. Multi-dimensional time series model of oil atomic spectrometric data of running-in period was treated as the standard model. Residues remained after new data were processed by the standard model. The residues variance matrix was selected as the features of the corresponding wear state. Then, high dimensional feature vectors were reduced through the principal component analysis and the first three principal components were extracted to represent the wear state. Euclidean distance was computed for feature vectors to classify the testing samples. Thus, the mechanical wear state was identified correctly. The wear state of a specified track vehicle engine was effectively identified, which verified the validity of the proposed method. Experimental results showed that introducing the multi-dimensional time series model to oil spectrometric analysis can fuse the spectrum data and improve the accuracy of monitoring mechanical wear state.

11. Creating physically-based three-dimensional microstructures: Bridging phase-field and crystal plasticity models.

SciTech Connect

Lim, Hojun; Owen, Steven J.; Abdeljawad, Fadi F.; Hanks, Byron; Battaile, Corbett Chandler

2015-09-01

In order to better incorporate microstructures in continuum scale models, we use a novel finite element (FE) meshing technique to generate three-dimensional polycrystalline aggregates from a phase field grain growth model of grain microstructures. The proposed meshing technique creates hexahedral FE meshes that capture smooth interfaces between adjacent grains. Three dimensional realizations of grain microstructures from the phase field model are used in crystal plasticity-finite element (CP-FE) simulations of polycrystalline a -iron. We show that the interface conformal meshes significantly reduce artificial stress localizations in voxelated meshes that exhibit the so-called "wedding cake" interfaces. This framework provides a direct link between two mesoscale models - phase field and crystal plasticity - and for the first time allows mechanics simulations of polycrystalline materials using three-dimensional hexahedral finite element meshes with realistic topological features.

12. Recent developments in three-dimensional numerical estuarine models

USGS Publications Warehouse

Cheng, Ralph T.; Smith, Peter E.; Casulli, Vincenzo

1993-01-01

For a fixed cost, computing power increases 5 to 10 times every five years. The readily available computing resources have inspired new modal formulations and innovative model applications. Significant progress has been advanced in three-dimensional numerical estuarine modeling within the past three or four years. This paper attempts to review and summarize properties of new 3-D estuarine hydrodynamic models. The emphasis of the review is placed on the formulation, numerical methods. The emphasis of the review is placed on the formulation, numerical methods, spatial and temporal resolution, computational efficiency, and turbulence closure of new models. Recent research has provided guidelines for the proper use of 3-D models involving in the σ-transformation. Other models resort to a fixed level discretization in the vertical. The semi-implicit treatment in time-stepping models appears to have gained momentum. Future research in three-dimensional numerical modeling remains to be on computational efficiency and turbulent closure.

13. Existence of global weak solution for a reduced gravity two and a half layer model

SciTech Connect

Guo, Zhenhua Li, Zilai Yao, Lei

2013-12-15

We investigate the existence of global weak solution to a reduced gravity two and a half layer model in one-dimensional bounded spatial domain or periodic domain. Also, we show that any possible vacuum state has to vanish within finite time, then the weak solution becomes a unique strong one.

14. Large field inflation models from higher-dimensional gauge theories

Furuuchi, Kazuyuki; Koyama, Yoji

2015-02-01

Motivated by the recent detection of B-mode polarization of CMB by BICEP2 which is possibly of primordial origin, we study large field inflation models which can be obtained from higher-dimensional gauge theories. The constraints from CMB observations on the gauge theory parameters are given, and their naturalness are discussed. Among the models analyzed, Dante's Inferno model turns out to be the most preferred model in this framework.

15. Spatial and Temporal Low-Dimensional Models for Fluid Flow

NASA Technical Reports Server (NTRS)

Kalb, Virginia

2008-01-01

A document discusses work that obtains a low-dimensional model that captures both temporal and spatial flow by constructing spatial and temporal four-mode models for two classic flow problems. The models are based on the proper orthogonal decomposition at two reference Reynolds numbers. Model predictions are made at an intermediate Reynolds number and compared with direct numerical simulation results at the new Reynolds number.

16. Large field inflation models from higher-dimensional gauge theories

SciTech Connect

Furuuchi, Kazuyuki; Koyama, Yoji

2015-02-23

Motivated by the recent detection of B-mode polarization of CMB by BICEP2 which is possibly of primordial origin, we study large field inflation models which can be obtained from higher-dimensional gauge theories. The constraints from CMB observations on the gauge theory parameters are given, and their naturalness are discussed. Among the models analyzed, Dante’s Inferno model turns out to be the most preferred model in this framework.

17. Reducing variation in decomposition odour profiling using comprehensive two-dimensional gas chromatography.

PubMed

Perrault, Katelynn A; Stefanuto, Pierre-Hugues; Stuart, Barbara H; Rai, Tapan; Focant, Jean-François; Forbes, Shari L

2015-01-01

Challenges in decomposition odour profiling have led to variation in the documented odour profile by different research groups worldwide. Background subtraction and use of controls are important considerations given the variation introduced by decomposition studies conducted in different geographical environments. The collection of volatile organic compounds (VOCs) from soil beneath decomposing remains is challenging due to the high levels of inherent soil VOCs, further confounded by the use of highly sensitive instrumentation. This study presents a method that provides suitable chromatographic resolution for profiling decomposition odour in soil by comprehensive two-dimensional gas chromatography coupled with time-of-flight mass spectrometry using appropriate controls and field blanks. Logarithmic transformation and t-testing of compounds permitted the generation of a compound list of decomposition VOCs in soil. Principal component analysis demonstrated the improved discrimination between experimental and control soil, verifying the value of the data handling method. Data handling procedures have not been well documented in this field and standardisation would thereby reduce misidentification of VOCs present in the surrounding environment as decomposition byproducts. Uniformity of data handling and instrumental procedures will reduce analytical variation, increasing confidence in the future when investigating the effect of taphonomic variables on the decomposition VOC profile.

18. Dimensional reduction of the master equation for stochastic chemical networks: The reduced-multiplane method

Barzel, Baruch; Biham, Ofer; Kupferman, Raz; Lipshtat, Azi; Zait, Amir

2010-08-01

Chemical reaction networks which exhibit strong fluctuations are common in microscopic systems in which reactants appear in low copy numbers. The analysis of these networks requires stochastic methods, which come in two forms: direct integration of the master equation and Monte Carlo simulations. The master equation becomes infeasible for large networks because the number of equations increases exponentially with the number of reactive species. Monte Carlo methods, which are more efficient in integrating over the exponentially large phase space, also become impractical due to the large amounts of noisy data that need to be stored and analyzed. The recently introduced multiplane method [A. Lipshtat and O. Biham, Phys. Rev. Lett. 93, 170601 (2004)10.1103/PhysRevLett.93.170601] is an efficient framework for the stochastic analysis of large reaction networks. It is a dimensional reduction method, based on the master equation, which provides a dramatic reduction in the number of equations without compromising the accuracy of the results. The reduction is achieved by breaking the network into a set of maximal fully connected subnetworks (maximal cliques). A separate master equation is written for the reduced probability distribution associated with each clique, with suitable coupling terms between them. This method is highly efficient in the case of sparse networks, in which the maximal cliques tend to be small. However, in dense networks some of the cliques may be rather large and the dimensional reduction is not as effective. Furthermore, the derivation of the multiplane equations from the master equation is tedious and difficult. Here we present the reduced-multiplane method in which the maximal cliques are broken down to the fundamental two-vertex cliques. The number of equations is further reduced, making the method highly efficient even for dense networks. Moreover, the equations take a simpler form, which can be easily constructed using a diagrammatic procedure

19. An Effective Parameter Screening Strategy for High Dimensional Watershed Models

Khare, Y. P.; Martinez, C. J.; Munoz-Carpena, R.

2014-12-01

Watershed simulation models can assess the impacts of natural and anthropogenic disturbances on natural systems. These models have become important tools for tackling a range of water resources problems through their implementation in the formulation and evaluation of Best Management Practices, Total Maximum Daily Loads, and Basin Management Action Plans. For accurate applications of watershed models they need to be thoroughly evaluated through global uncertainty and sensitivity analyses (UA/SA). However, due to the high dimensionality of these models such evaluation becomes extremely time- and resource-consuming. Parameter screening, the qualitative separation of important parameters, has been suggested as an essential step before applying rigorous evaluation techniques such as the Sobol' and Fourier Amplitude Sensitivity Test (FAST) methods in the UA/SA framework. The method of elementary effects (EE) (Morris, 1991) is one of the most widely used screening methodologies. Some of the common parameter sampling strategies for EE, e.g. Optimized Trajectories [OT] (Campolongo et al., 2007) and Modified Optimized Trajectories [MOT] (Ruano et al., 2012), suffer from inconsistencies in the generated parameter distributions, infeasible sample generation time, etc. In this work, we have formulated a new parameter sampling strategy - Sampling for Uniformity (SU) - for parameter screening which is based on the principles of the uniformity of the generated parameter distributions and the spread of the parameter sample. A rigorous multi-criteria evaluation (time, distribution, spread and screening efficiency) of OT, MOT, and SU indicated that SU is superior to other sampling strategies. Comparison of the EE-based parameter importance rankings with those of Sobol' helped to quantify the qualitativeness of the EE parameter screening approach, reinforcing the fact that one should use EE only to reduce the resource burden required by FAST/Sobol' analyses but not to replace it.

20. Reducing radiation losses of one-dimensional photonic-crystal mirrors in a silica waveguide

Ding, Wei; Liu, Rong-juan; Li, Zhi-yuan

2012-11-01

One-dimensional PhC mirrors are constructed in a single-mode silica slab waveguide with a row of elliptical holes. The photonic band gap (PBG) of the PhC structure is attained by fast eigen-mode calculations. Being aware that component radiated waves of the PhC mirror are generated at interfaces between different waveguide sections, when propagating guided waves impinge on these interfaces, we point out that the total radiation loss of the PhC mirror is consequence of interferometric interplays of component radiated waves. We visualize this radiation generation process with intuitive pictures. We also estimate total radiation losses of PhC mirrors by using an analytical model. For uniform PhC mirrors, our model explains the oscillations of the total radiation loss with the increase of the period number. The calculated results agree well with the numerical simulations in terms of the oscillation period, the damping speed, the initial phase, and the relative intensity. For non-uniform PhC mirrors, our model finds that the progressively tapered transition from the feeding waveguide to the PhC mirror does not yield the lowest radiation loss. This finding is against to the well known "impedance-matching" picture. The matching of our model with the simulated results certifies the interferometric nature of the radiation generation process in a PhC mirror especially when a low-index waveguide is considered.

Steinvall, Ove K.; Carlsson, Tomas

2001-09-01

Laser radars have the unique capability to give intensity and full 3-D images of an object. Doppler lidars can give velocity and vibration characteristics of an objects. These systems have many civilian and military applications such as terrain modelling, depth sounding, object detection and classification as well as object positioning. In order to derive the signal waveform from the object one has to account for the laser pulse time characteristics, media effects such as the atmospheric attenuation and turbulence effects or scattering properties, the target shape and reflection (BRDF), speckle noise together with the receiver and background noise. Finally the type of waveform processing (peak detection, leading edge etc.) is needed to model the sensor output to be compared with observations. We have developed a computer model which models performance of a 3-D laser radar. We will give examples of signal waveforms generated from model different targets calculated by integrating the laser beam profile in space and time over the target including reflection characteristics during different speckle and turbulence conditions. The result will be of help when designing and using new laser radar systems. The importance of different type of signal processing of the waveform in order to fulfil performance goals will be shown.

2. Underwater striling engine design with modified one-dimensional model

Li, Daijin; Qin, Kan; Luo, Kai

2015-09-01

Stirling engines are regarded as an efficient and promising power system for underwater devices. Currently, many researches on one-dimensional model is used to evaluate thermodynamic performance of Stirling engine, but in which there are still some aspects which cannot be modeled with proper mathematical models such as mechanical loss or auxiliary power. In this paper, a four-cylinder double-acting Stirling engine for Unmanned Underwater Vehicles (UUVs) is discussed. And a one-dimensional model incorporated with empirical equations of mechanical loss and auxiliary power obtained from experiments is derived while referring to the Stirling engine computer model of National Aeronautics and Space Administration (NASA). The P-40 Stirling engine with sufficient testing results from NASA is utilized to validate the accuracy of this one-dimensional model. It shows that the maximum error of output power of theoretical analysis results is less than 18% over testing results, and the maximum error of input power is no more than 9%. Finally, a Stirling engine for UUVs is designed with Schmidt analysis method and the modified one-dimensional model, and the results indicate this designed engine is capable of showing desired output power.

3. Underwater striling engine design with modified one-dimensional model

Li, Daijin; Qin, Kan; Luo, Kai

2015-05-01

Stirling engines are regarded as an efficient and promising power system for underwater devices. Currently, many researches on one-dimensional model is used to evaluate thermodynamic performance of Stirling engine, but in which there are still some aspects which cannot be modeled with proper mathematical models such as mechanical loss or auxiliary power. In this paper, a four-cylinder double-acting Stirling engine for Unmanned Underwater Vehicles (UUVs) is discussed. And a one-dimensional model incorporated with empirical equations of mechanical loss and auxiliary power obtained from experiments is derived while referring to the Stirling engine computer model of National Aeronautics and Space Administration (NASA). The P-40 Stirling engine with sufficient testing results from NASA is utilized to validate the accuracy of this one-dimensional model. It shows that the maximum error of output power of theoretical analysis results is less than 18% over testing results, and the maximum error of input power is no more than 9%. Finally, a Stirling engine for UUVs is designed with Schmidt analysis method and the modified one-dimensional model, and the results indicate this designed engine is capable of showing desired output power.

4. Ultraefficient reduced model for countercurrent two-layer flows

Lavalle, Gianluca; Vila, Jean-Paul; Lucquiaud, Mathieu; Valluri, Prashant

2017-01-01

We investigate the dynamics of two superposed layers with density contrast flowing countercurrent inside a channel, when the lower layer is much thinner than the wavelength of interfacial waves. We apply a low-dimensional film model to the bottom (heavier) layer and introduce a fast and efficient method to predict the onset of flow reversal in this phase. We study three vertical scenarios with different applied pressure gradients and compare the temporal growth rates of linear and weakly nonlinear waves to the Orr-Sommerfeld problem and to the weakly nonlinear theory, respectively. At the loading point, i.e., when a large wave hump stands at the interface, our spatiotemporal analysis shows that the system is absolutely unstable. We then present profiles of nonlinear saturated waves, pressure field, and streamline distribution in agreement with direct numerical simulation. The reduced model presented here allows us to explore the effect of the upper-layer speed on the wave pattern, showing that the wave profile is very sensitive when the mean film thickness, rather than the liquid flow rate, is maintained constant in the simulation. In addition, we show the strong effect of surface tension on both the maximum wave hump and the crest steepness before the loading point. Finally, we reveal how the nonlinear wave speed affects the vortex distribution within the lower layer by analyzing the stream function under different scenarios.

5. Modeling of Low-Dimensional Semiconductors

Ünlü, Hilmi; Gürel, H. Hakan; Akıncı, Özden; Karim, Mohamed Rezaul

In this chapter, we discuss the general methodology to carry out qualitatively reliable and quantitatively precise calculations of electronic band structure of heterostructures that are essential in the realistic modeling and prediction of device performance in technologically important semiconductor devices, which can proceed relatively independently of experiment.

6. Assessing and reducing hydrogeologic model uncertainty

Technology Transfer Automated Retrieval System (TEKTRAN)

NRC is sponsoring research that couples model abstraction techniques with model uncertainty assessment methods. Insights and information from this program will be useful in decision making by NRC staff, licensees and stakeholders in their assessment of subsurface radionuclide transport. All analytic...

7. A proposed Fast algorithm to construct the system matrices for a reduced-order groundwater model

Ushijima, Timothy T.; Yeh, William W.-G.

2017-04-01

Past research has demonstrated that a reduced-order model (ROM) can be two-to-three orders of magnitude smaller than the original model and run considerably faster with acceptable error. A standard method to construct the system matrices for a ROM is Proper Orthogonal Decomposition (POD), which projects the system matrices from the full model space onto a subspace whose range spans the full model space but has a much smaller dimension than the full model space. This projection can be prohibitively expensive to compute if it must be done repeatedly, as with a Monte Carlo simulation. We propose a Fast Algorithm to reduce the computational burden of constructing the system matrices for a parameterized, reduced-order groundwater model (i.e. one whose parameters are represented by zones or interpolation functions). The proposed algorithm decomposes the expensive system matrix projection into a set of simple scalar-matrix multiplications. This allows the algorithm to efficiently construct the system matrices of a POD reduced-order model at a significantly reduced computational cost compared with the standard projection-based method. The developed algorithm is applied to three test cases for demonstration purposes. The first test case is a small, two-dimensional, zoned-parameter, finite-difference model; the second test case is a small, two-dimensional, interpolated-parameter, finite-difference model; and the third test case is a realistically-scaled, two-dimensional, zoned-parameter, finite-element model. In each case, the algorithm is able to accurately and efficiently construct the system matrices of the reduced-order model.

8. Reducing RANS Model Error Using Random Forest

Wang, Jian-Xun; Wu, Jin-Long; Xiao, Heng; Ling, Julia

2016-11-01

Reynolds-Averaged Navier-Stokes (RANS) models are still the work-horse tools in the turbulence modeling of industrial flows. However, the model discrepancy due to the inadequacy of modeled Reynolds stresses largely diminishes the reliability of simulation results. In this work we use a physics-informed machine learning approach to improve the RANS modeled Reynolds stresses and propagate them to obtain the mean velocity field. Specifically, the functional forms of Reynolds stress discrepancies with respect to mean flow features are trained based on an offline database of flows with similar characteristics. The random forest model is used to predict Reynolds stress discrepancies in new flows. Then the improved Reynolds stresses are propagated to the velocity field via RANS equations. The effects of expanding the feature space through the use of a complete basis of Galilean tensor invariants are also studied. The flow in a square duct, which is challenging for standard RANS models, is investigated to demonstrate the merit of the proposed approach. The results show that both the Reynolds stresses and the propagated velocity field are improved over the baseline RANS predictions. SAND Number: SAND2016-7437 A

9. Elastic models of defects in two-dimensional crystals

Kolesnikova, A. L.; Orlova, T. S.; Hussainova, I.; Romanov, A. E.

2014-12-01

Elastic models of defects in two-dimensional (2D) crystals are presented in terms of continuum mechanics. The models are based on the classification of defects, which is founded on the dimensionality of the specification region of their self-distortions, i.e., lattice distortions associated with the formation of defects. The elastic field of an infinitesimal dislocation loop in a film is calculated for the first time. The fields of the center of dilatation, dislocation, disclination, and circular inclusion in planar 2D elastic media, namely, nanofilms and graphenes, are considered. Elastic fields of defects in 2D and 3D crystals are compared.

10. Three-dimensional cell culture models for investigating human viruses.

PubMed

He, Bing; Chen, Guomin; Zeng, Yi

2016-10-01

Three-dimensional (3D) culture models are physiologically relevant, as they provide reproducible results, experimental flexibility and can be adapted for high-throughput experiments. Moreover, these models bridge the gap between traditional two-dimensional (2D) monolayer cultures and animal models. 3D culture systems have significantly advanced basic cell science and tissue engineering, especially in the fields of cell biology and physiology, stem cell research, regenerative medicine, cancer research, drug discovery, and gene and protein expression studies. In addition, 3D models can provide unique insight into bacteriology, virology, parasitology and host-pathogen interactions. This review summarizes and analyzes recent progress in human virological research with 3D cell culture models. We discuss viral growth, replication, proliferation, infection, virus-host interactions and antiviral drugs in 3D culture models.

11. Fermions in five-dimensional brane world models

Smolyakov, Mikhail N.

2016-06-01

In the present paper the fermion fields, living in the background of five-dimensional warped brane world models with compact extra dimension, are thoroughly examined. The Kaluza-Klein decomposition and isolation of the physical degrees of freedom is performed for those five-dimensional fermion field Lagrangians, which admit such a decomposition to be performed in a mathematically consistent way and provide a physically reasonable four-dimensional effective theory. It is also shown that for the majority of five-dimensional fermion field Lagrangians there are no (at least rather obvious) ways to perform the Kaluza-Klein decomposition consistently. Moreover, in these cases one may expect the appearance of various pathologies in the four-dimensional effective theory. Among the cases, for which the Kaluza-Klein decomposition can be performed in a mathematically consistent way, the case, which reproduces the Standard Model by the zero Kaluza-Klein modes most closely regardless of the size of the extra dimension, is examined in detail in the background of the Randall-Sundrum model.

12. On numerical modeling of one-dimensional geothermal histories

USGS Publications Warehouse

Haugerud, R.A.

1989-01-01

Numerical models of one-dimensional geothermal histories are one way of understanding the relations between tectonics and transient thermal structure in the crust. Such models can be powerful tools for interpreting geochronologic and thermobarometric data. A flexible program to calculate these models on a microcomputer is available and examples of its use are presented. Potential problems with this approach include the simplifying assumptions that are made, limitations of the numerical techniques, and the neglect of convective heat transfer. ?? 1989.

13. Three-dimensional models. [For orbital celestial mechanics

SciTech Connect

Hunter, C. )

1990-06-01

The Schwarzschild (1979) approach to the analysis of three-dimensional galactic models is reviewed. An analysis of triaxial Staeckel models is discussed which shows that such models have a wide variety of possible distribution functions. The uniqueness that Schwarzschild first encountered in his discrete formulation of the problem of finding a three-integral distribution function for a triaxial density is real and not an artifact of the finite cell approximation. 27 refs.

14. One-dimensional and three-dimensional models of cerebrovascular flow.

PubMed

Moore, S M; Moorhead, K T; Chase, J G; David, T; Fink, J

2005-06-01

The Circle of Willis is a ring-like structure of blood vessels found beneath the hypothalamus at the base of the brain. Its main function is to distribute oxygen-rich arterial blood to the cerebral mass. One-dimensional (1D) and three-dimensional (3D) computational fluid dynamics (CFD) models of the Circle of Willis have been created to provide a simulation tool which can potentially be used to identify at-risk cerebral arterial geometries and conditions and replicate clinical scenarios, such as occlusions in afferent arteries and absent circulus vessels. Both models capture cerebral haemodynamic autoregulation using a proportional-integral (PI) controller to modify efferent artery resistances to maintain optimal efferent flow rates for a given circle geometry and afferent blood pressure. The models can be used to identify at-risk cerebral arterial geometries and conditions prior to surgery or other clinical procedures. The 1D model is particularly relevant in this instance, with its fast solution time suitable for real-time clinical decisions. Results show the excellent correlation between models for the transient efferent flux profile. The assumption of strictly Poiseuille flow in the 1D model allows more flow through the geometrically extreme communicating arteries than the 3D model. This discrepancy was overcome by increasing the resistance to flow in the anterior communicating artery in the 1D model to better match the resistance seen in the 3D results.

15. Zero-Dimensional Hybrid Organic-Inorganic Halide Perovskite Modeling: Insights from First Principles.

PubMed

Giorgi, Giacomo; Yamashita, Koichi

2016-03-03

We discuss the properties of zero dimensional (cluster) hybrid organic-inorganic halide perovskite in view of their possible applicability in photovoltaics, light-emitting, and lasing devices. To support the need of theoretical investigations of such systems and pave the way for future investigations of clusters with different orientations, terminations, and compositions, we have assembled and characterized some zero dimensional models of methylammonium lead iodide, MAPbI3, by "cutting" its bulk. Interesting properties of such clusters that have been here theoretically investigated include their charge distribution, bandgap, wave function localization, and reduced effective mass. The surface orientation/termination and the organic/inorganic cation ratios have been discussed together with the roles they play in determining the electronic properties of such clusters. Also in agreement with experiments, it emerges that surface termination is crucial in determining the structural and optoelectronic properties of this largely overlooked, dimensionally reduced class of materials. Analogies and differences between clusters and bulk are discussed.

16. Performance of a reduced-order FSI model for flow-induced vocal fold vibration

Chang, Siyuan; Luo, Haoxiang; Luo's lab Team

2016-11-01

Vocal fold vibration during speech production involves a three-dimensional unsteady glottal jet flow and three-dimensional nonlinear tissue mechanics. A full 3D fluid-structure interaction (FSI) model is computationally expensive even though it provides most accurate information about the system. On the other hand, an efficient reduced-order FSI model is useful for fast simulation and analysis of the vocal fold dynamics, which is often needed in procedures such as optimization and parameter estimation. In this work, we study the performance of a reduced-order model as compared with the corresponding full 3D model in terms of its accuracy in predicting the vibration frequency and deformation mode. In the reduced-order model, we use a 1D flow model coupled with a 3D tissue model. Two different hyperelastic tissue behaviors are assumed. In addition, the vocal fold thickness and subglottal pressure are varied for systematic comparison. The result shows that the reduced-order model provides consistent predictions as the full 3D model across different tissue material assumptions and subglottal pressures. However, the vocal fold thickness has most effect on the model accuracy, especially when the vocal fold is thin. Supported by the NSF.

17. FEEDBACK FROM CENTRAL BLACK HOLES IN ELLIPTICAL GALAXIES: TWO-DIMENSIONAL MODELS COMPARED TO ONE-DIMENSIONAL MODELS

SciTech Connect

Novak, Gregory S.; Ostriker, Jeremiah P.; Ciotti, Luca

2011-08-10

We extend the black hole (BH) feedback models of Ciotti, Ostriker, and Proga to two dimensions. In this paper, we focus on identifying the differences between the one-dimensional and two-dimensional hydrodynamical simulations. We examine a normal, isolated L{sub *} galaxy subject to the cooling flow instability of gas in the inner regions. Allowance is made for subsequent star formation, Type Ia and Type II supernovae, radiation pressure, and inflow to the central BH from mildly rotating galactic gas which is being replenished as a normal consequence of stellar evolution. The central BH accretes some of the infalling gas and expels a conical wind with mass, momentum, and energy flux derived from both observational and theoretical studies. The galaxy is assumed to have low specific angular momentum in analogy with the existing one-dimensional case in order to isolate the effect of dimensionality. The code then tracks the interaction of the outflowing radiation and winds with the galactic gas and their effects on regulating the accretion. After matching physical modeling to the extent possible between the one-dimensional and two-dimensional treatments, we find essentially similar results in terms of BH growth and duty cycle (fraction of the time above a given fraction of the Eddington luminosity). In the two-dimensional calculations, the cool shells forming at 0.1-1 kpc from the center are Rayleigh-Taylor unstable to fragmentation, leading to a somewhat higher accretion rate, less effective feedback, and a more irregular pattern of bursting compared with the one-dimensional case.

18. Highly efficient supercapacitor electrode with two-dimensional tungsten disulfide and reduced graphene oxide hybrid nanosheets

Tu, Chao-Chi; Lin, Lu-Yin; Xiao, Bing-Chang; Chen, Yu-Shiang

2016-07-01

Two-dimensional (2D) nanostructures with their high surface area and large in-plane conductivity have been regarded as promising materials for supercapacitors (SCs). Tungsten disulfide (WS2) is highly suitable for charge accumulation with its abundant active sites in the interspacing between the 2D structures and the intraspacing of each atomic layer, as well as on the tungsten centers with the charges generated by the Faradaic reactions. This study proposes the preparation of well-constructed WS2/reduced graphene oxide (RGO) nanosheets using a simple molten salt process as the electroactive material for SCs, which presents a high specific capacitance (CF) of 2508.07 F g-1 at the scan rate of 1 mV s-1, because of the synergic effect of WS2 with its large charge-accumulating sites on the 2D planes and RGO with its highly enhanced conductivity and improved connections in the WS2 networks. The excellent cycling stability of 98.6% retention after 5000 cycles charge/discharge process and the Coulombic efficiency close to 100% for the entire measurement are also achieved for the WS2/RGO-based SC electrode. The results suggest the potential for the combination of the 2D metal sulfide and carbon materials as the charge storage material to solve the energy problems and attain a sustainable society.

19. Micropolar continuum modelling of bi-dimensional tetrachiral lattices

PubMed Central

Chen, Y.; Liu, X. N.; Hu, G. K.; Sun, Q. P.; Zheng, Q. S.

2014-01-01

The in-plane behaviour of tetrachiral lattices should be characterized by bi-dimensional orthotropic material owing to the existence of two orthogonal axes of rotational symmetry. Moreover, the constitutive model must also represent the chirality inherent in the lattices. To this end, a bi-dimensional orthotropic chiral micropolar model is developed based on the theory of irreducible orthogonal tensor decomposition. The obtained constitutive tensors display a hierarchy structure depending on the symmetry of the underlying microstructure. Eight additional material constants, in addition to five for the hemitropic case, are introduced to characterize the anisotropy under Z2 invariance. The developed continuum model is then applied to a tetrachiral lattice, and the material constants of the continuum model are analytically derived by a homogenization process. By comparing with numerical simulations for the discrete lattice, it is found that the proposed continuum model can correctly characterize the static and wave properties of the tetrachiral lattice. PMID:24808754

20. Optimization Model for Reducing Emissions of Greenhouse ...

EPA Pesticide Factsheets

The EPA Vehicle Greenhouse Gas (VGHG) model is used to apply various technologies to a defined set of vehicles in order to meet a specified GHG emission target, and to then calculate the costs and benefits of doing so. To facilitate its analysis of the costs and benefits of the control of GHG emissions from cars and trucks.

1. Reduced-Order Models for Acoustic Response Prediction

DTIC Science & Technology

2011-07-01

acoustic and thermal loading. These methods reduce a finite element model to a reduced-order system of nonlinear modal equations. A short...magnitude reductions in computational cost over full-order finite element analysis. 15. SUBJECT TERMS sonic fatigue, reduced-order models, acoustic...4.4.3 Vacuum Shaker Test ...........................................................................................93 4.4.4 Finite element

2. Interactive Multimedia and Concrete Three-Dimensional Modelling.

ERIC Educational Resources Information Center

Baxter, J. H.; Preece, Peter F. W.

1999-01-01

Compares a multimedia package for teaching about the phases of the moon to grade 8 (12-year-old) students with a conventional three-dimensional modeling approach. Results show both methods were equally effective in terms of student learning, for male and female students, and prior computer experience was not a factor in multimedia use. (Author/LRW)

3. A two-dimensional analytical model of petroleum vapor intrusion

PubMed Central

Yao, Yijun; Verginelli, Iason; Suuberg, Eric M.

2017-01-01

In this study we present an analytical solution of a two-dimensional petroleum vapor intrusion model, which incorporates a steady-state diffusion-dominated vapor transport in a homogeneous soil and piecewise first-order aerobic biodegradation limited by oxygen availability. This new model can help practitioners to easily generate two-dimensional soil gas concentration profiles for both hydrocarbons and oxygen and estimate hydrocarbon indoor air concentrations as a function of site-specific conditions such as source strength and depth, reaction rate constant, soil characteristics and building features. The soil gas concentration profiles generated by this new model are shown in good agreement with three-dimensional numerical simulations and two-dimensional measured soil gas data from a field study. This implies that for cases involving diffusion dominated soil gas transport, steady state conditions and homogenous source and soil, this analytical model can be used as a fast and easy-to-use risk screening tool by replicating the results of 3-D numerical simulations but with much less computational effort. PMID:28255184

4. Judgment Research and the Dimensional Model of Personality

ERIC Educational Resources Information Center

Garb, Howard N.

2008-01-01

Comments on the original article "Plate tectonics in the classification of personality disorder: Shifting to a dimensional model," by T. A. Widiger and T. J. Trull. The purpose of this comment is to address (a) whether psychologists know how personality traits are currently assessed by clinicians and (b) the reliability and validity of those…

5. THREE-DIMENSIONAL NAPL FATE AND TRANSPORT MODEL

EPA Science Inventory

We have added several new and significant capabilities to UTCHEM to make it into a general-purpose NAPL simulator. The simulator is now capable of modeling transient and steady-state three-dimensional flow and mass transport in the groundwater (saturated) and vadose (unsaturated...

6. A two-dimensional analytical model of petroleum vapor intrusion

Yao, Yijun; Verginelli, Iason; Suuberg, Eric M.

2016-02-01

In this study we present an analytical solution of a two-dimensional petroleum vapor intrusion model, which incorporates a steady-state diffusion-dominated vapor transport in a homogeneous soil and piecewise first-order aerobic biodegradation limited by oxygen availability. This new model can help practitioners to easily generate two-dimensional soil gas concentration profiles for both hydrocarbons and oxygen and estimate hydrocarbon indoor air concentrations as a function of site-specific conditions such as source strength and depth, reaction rate constant, soil characteristics and building features. The soil gas concentration profiles generated by this new model are shown in good agreement with three-dimensional numerical simulations and two-dimensional measured soil gas data from a field study. This implies that for cases involving diffusion dominated soil gas transport, steady state conditions and homogenous source and soil, this analytical model can be used as a fast and easy-to-use risk screening tool by replicating the results of 3-D numerical simulations but with much less computational effort.

7. A Framework for Dimensionality Assessment for Multidimensional Item Response Models

ERIC Educational Resources Information Center

Svetina, Dubravka; Levy, Roy

2014-01-01

A framework is introduced for considering dimensionality assessment procedures for multidimensional item response models. The framework characterizes procedures in terms of their confirmatory or exploratory approach, parametric or nonparametric assumptions, and applicability to dichotomous, polytomous, and missing data. Popular and emerging…

8. Three dimensional global modeling of atmospheric CO2

NASA Technical Reports Server (NTRS)

Fung, I.; Hansen, J.; Rind, D.

1983-01-01

A model was developed to study the prospects of extracting information on carbon dioxide sources and sinks from observed CO2 variations. The approach uses a three dimensional global transport model, based on winds from a 3-D general circulation model (GCM), to advect CO2 noninteractively, i.e., as a tracer, with specified sources and sinks of CO2 at the surface. The 3-D model employed is identified and biosphere, ocean and fossil fuel sources and sinks are discussed. Some preliminary model results are presented.

9. Reduced Order Modeling of Bubble Cloud Dynamics in a Focused Ultrasound Field

Maeda, Kazuki; Colonius, Tim

2016-11-01

In order to characterize the cloud cavitation in burst wave lithotripsy, reduced order modeling of the dynamics of a spherical bubble cloud of a radius O (1) mm interacting with traveling ultrasound waves of an amplitude O(1) MPa in water is presented. Bubbles are treated as spherical, radially oscillating cavities dispersed in continuous liquid phase. The volume of Lagrangian point bubbles is mapped with a regularization kernel as void fraction onto three-dimensional Cartesian grids that define the Eulerian liquid phase. The flow field is solved using a WENO-based compressible flow solver. The initial size and number density of the bubbles are critical for their coherent dynamics in the cloud, yet three-dimensional simulations of clouds with various parameters are computationally demanding. For further reduced-order modeling, a new kernel is introduce into the model to regularize bubbles onto two-dimensional, axisymmetric grids. The evolution of the void fraction and the maximum pressure in the cloud simulated using the model agree with results of three-dimensional simulations, while the reduction in computational cost is a factor of O (100) . Finally, the model is applied to a parametric study of the coherent dynamics of bubbles.

10. Star-triangle relation for a three-dimensional model

SciTech Connect

Bazhanov, V.V. Institute for High Eenrgy Physics, Protvino, Moscow Region ); Baxter, R.J. Australian National Univ., Canberra )

1993-06-01

The solvable sl(n)-chiral Potts model can be interpreted as a three-dimensional lattice model with local interactions. To within a minor modification of the boundary conditions it is an Ising-type model on the body-centered cubic lattice with two- and three-spin interactions. The corresponding local Boltzmann weights obey a number of simple relations, including a restricted star-triangle relation, which is a modified version of the well-known star-triangle relation appearing in two-dimensional models. It is shown that these relations lead to remarkable symmetry properties of the Boltzmann weight function of an elementary cube of the lattice, related to the spatial symmetry group of the cubic lattice. These symmetry properties allow one to prove the commutativity of the row-to-row transfer matrices, bypassing the tetrahedron relation. The partition function per site for the infinite lattice is calculated exactly. 20 refs., 4 figs.

11. Three-dimensional control-volume distributed multi-point flux approximation coupled with a lower-dimensional surface fracture model

Ahmed, Raheel; Edwards, Michael G.; Lamine, Sadok; Huisman, Bastiaan A. H.; Pal, Mayur

2015-12-01

A novel cell-centred control-volume distributed multi-point flux approximation (CVD-MPFA) finite-volume formulation is presented for discrete fracture-matrix simulations on unstructured grids in three-dimensions (3D). The grid is aligned with fractures and barriers which are then modelled as lower-dimensional surface interfaces located between the matrix cells in the physical domain. The three-dimensional pressure equation is solved in the matrix domain coupled with a two-dimensional (2D) surface pressure equation solved over fracture networks via a novel surface CVD-MPFA formulation. The CVD-MPFA formulation naturally handles fractures with anisotropic permeabilities on unstructured grids. Matrix-fracture fluxes are expressed in terms of matrix and fracture pressures and define the transfer function, which is added to the lower-dimensional flow equation and couples the three-dimensional and surface systems. An additional transmission condition is used between matrix cells adjacent to low permeable fractures to couple the velocity and pressure jump across the fractures. Convergence and accuracy of the lower-dimensional fracture model is assessed for highly anisotropic fractures having a range of apertures and permeability tensors. A transport equation for tracer flow is coupled via the Darcy flux for single and intersecting fractures. The lower-dimensional approximation for intersecting fractures avoids the more restrictive CFL condition corresponding to the equi-dimensional approximation with explicit time discretisation. Lower-dimensional fracture model results are compared with equi-dimensional model results. Fractures and barriers are efficiently modelled by lower-dimensional interfaces which yield comparable results to those of the equi-dimensional model. Pressure continuity is built into the model across highly conductive fractures, leading to reduced local degrees of freedom in the CVD-MPFA approximation. The formulation is applied to geologically complex

12. A multiphase model for three-dimensional tumor growth

Sciumè, G.; Shelton, S.; Gray, W. G.; Miller, C. T.; Hussain, F.; Ferrari, M.; Decuzzi, P.; Schrefler, B. A.

2013-01-01

Several mathematical formulations have analyzed the time-dependent behavior of a tumor mass. However, most of these propose simplifications that compromise the physical soundness of the model. Here, multiphase porous media mechanics is extended to model tumor evolution, using governing equations obtained via the thermodynamically constrained averaging theory. A tumor mass is treated as a multiphase medium composed of an extracellular matrix (ECM); tumor cells (TCs), which may become necrotic depending on the nutrient concentration and tumor phase pressure; healthy cells (HCs); and an interstitial fluid for the transport of nutrients. The equations are solved by a finite element method to predict the growth rate of the tumor mass as a function of the initial tumor-to-healthy cell density ratio, nutrient concentration, mechanical strain, cell adhesion and geometry. Results are shown for three cases of practical biological interest such as multicellular tumor spheroids (MTSs) and tumor cords. First, the model is validated by experimental data for time-dependent growth of an MTS in a culture medium. The tumor growth pattern follows a biphasic behavior: initially, the rapidly growing TCs tend to saturate the volume available without any significant increase in overall tumor size; then, a classical Gompertzian pattern is observed for the MTS radius variation with time. A core with necrotic cells appears for tumor sizes larger than 150 μm, surrounded by a shell of viable TCs whose thickness stays almost constant with time. A formula to estimate the size of the necrotic core is proposed. In the second case, the MTS is confined within a healthy tissue. The growth rate is reduced, as compared to the first case—mostly due to the relative adhesion of the TCs and HCs to the ECM, and the less favorable transport of nutrients. In particular, for HCs adhering less avidly to the ECM, the healthy tissue is progressively displaced as the malignant mass grows, whereas TC

13. A refined one-dimensional rotordynamics model with three-dimensional capabilities

Carrera, E.; Filippi, M.

2016-03-01

This paper evaluates the vibration characteristics of various rotating structures. The present methodology exploits the one-dimensional Carrera Unified Formulation (1D CUF), which enables one to go beyond the kinematic assumptions of classical beam theories. According to the component-wise (CW) approach, Lagrange-like polynomial expansions (LE) are here adopted to develop the refined displacement theories. The LE elements make it possible to model each structural component of the rotor with an arbitrary degree of accuracy using either different displacement theories or localized mesh refinements. Hamilton's Principle is used to derive the governing equations, which are solved by the Finite Element Method. The CUF one-dimensional theory includes all the effects due to rotation, namely the Coriolis term, spin softening and geometrical stiffening. The numerical simulations have been performed considering a thin ring, discs and bladed-deformable shafts. The effects of the number and the position of the blades on the dynamic stability of the rotor have been evaluated. The results have been compared, when possible, with the 2D and 3D solutions that are available in the literature. CUF models appear very practical to investigate the dynamics of complex rotating structures since they provide 2D and quasi-3D results, while preserving the computational effectiveness of one-dimensional solutions.

14. Analytical two-dimensional model of solar cell current-voltage characteristics

Caldararu, F.; Caldararu, M.; Nan, S.; Nicolaescu, D.; Vasile, S.

1991-06-01

This paper describes an analytical two-dimensional model for pn junction solar cell I-V characteristic. In order to solve the two-dimensional equations for the minority carrier concentration the Laplace transformation method is used. The model eliminates Hovel's assumptions concerning a one-dimensional model and provides an I-V characteristic that is simpler than those derived from the one-dimensional model. The method can be extended to any other device with two-dimensional symmetry.

15. Reduced quasilinear models for energetic particles interaction with Alfvenic eigenmodes

Ghantous, Katy

The Line Broadened Quasilinear (LBQ) and the 1.5D reduced models are able to predict the effect of Alfvenic eigenmodes' interaction with energetic particles in burning plasmas. This interaction can result in energetic-particle losses that can damage the first wall, deteriorate the plasma performance, and even prevent ignition. The 1.5D model assumes a broad spectrum of overlapping modes and, based on analytic expressions for the growth and damping rates, calculates the pressure profiles that the energetic particles relax to upon interacting with the modes. 1.5D is validated with DIII-D experiments and predicted neutron losses consistent with observation. The model is employed to predict alpha-particle fusion-product losses in a large-scale operational parameter-space for burning plasmas. The LBQ model captures the interaction both in the regime of isolated modes as well as in the conventional regime of overlapping modes. Rules were established that allow quasilinear equations to replicate the expected steady-state saturation levels of isolated modes. The fitting formula is improved and the model is benchmarked with a Vlasov code, BOT. The saturation levels are accurately predicted and the mode evolution is well-replicated in the case of steady-state evolution where the collisions are high enough that coherent structures do not form. When the collisionality is low, oscillatory behavior can occur. LBQ can also exhibit non-steady behavior, but the onset of oscillations occurs for much higher collisional rates in BOT than in LBQ. For certain parameters of low collisionality, hole-clump creation and frequency chirping can occur which are not captured by the LBQ model. Also, there are cases of non-steady evolution without chirping which is possible for LBQ to study. However the results are inconclusive since the periods and amplitudes of the oscillations in the mode evolution are not well-replicated. If multiple modes exist, they can grow to the point of overlap which

16. POD-Galerkin reduced-order modeling with adaptive finite element snapshots

Ullmann, Sebastian; Rotkvic, Marko; Lang, Jens

2016-11-01

We consider model order reduction by proper orthogonal decomposition (POD) for parametrized partial differential equations, where the underlying snapshots are computed with adaptive finite elements. We address computational and theoretical issues arising from the fact that the snapshots are members of different finite element spaces. We propose a method to create a POD-Galerkin model without interpolating the snapshots onto their common finite element mesh. The error of the reduced-order solution is not necessarily Galerkin orthogonal to the reduced space created from space-adapted snapshot. We analyze how this influences the error assessment for POD-Galerkin models of linear elliptic boundary value problems. As a numerical example we consider a two-dimensional convection-diffusion equation with a parametrized convective direction. To illustrate the applicability of our techniques to non-linear time-dependent problems, we present a test case of a two-dimensional viscous Burgers equation with parametrized initial data.

17. Two-dimensional Core-collapse Supernova Models with Multi-dimensional Transport

Dolence, Joshua C.; Burrows, Adam; Zhang, Weiqun

2015-02-01

We present new two-dimensional (2D) axisymmetric neutrino radiation/hydrodynamic models of core-collapse supernova (CCSN) cores. We use the CASTRO code, which incorporates truly multi-dimensional, multi-group, flux-limited diffusion (MGFLD) neutrino transport, including all relevant {O}(v/c) terms. Our main motivation for carrying out this study is to compare with recent 2D models produced by other groups who have obtained explosions for some progenitor stars and with recent 2D VULCAN results that did not incorporate {O}(v/c) terms. We follow the evolution of 12, 15, 20, and 25 solar-mass progenitors to approximately 600 ms after bounce and do not obtain an explosion in any of these models. Though the reason for the qualitative disagreement among the groups engaged in CCSN modeling remains unclear, we speculate that the simplifying "ray-by-ray" approach employed by all other groups may be compromising their results. We show that "ray-by-ray" calculations greatly exaggerate the angular and temporal variations of the neutrino fluxes, which we argue are better captured by our multi-dimensional MGFLD approach. On the other hand, our 2D models also make approximations, making it difficult to draw definitive conclusions concerning the root of the differences between groups. We discuss some of the diagnostics often employed in the analyses of CCSN simulations and highlight the intimate relationship between the various explosion conditions that have been proposed. Finally, we explore the ingredients that may be missing in current calculations that may be important in reproducing the properties of the average CCSNe, should the delayed neutrino-heating mechanism be the correct mechanism of explosion.

18. TWO-DIMENSIONAL CORE-COLLAPSE SUPERNOVA MODELS WITH MULTI-DIMENSIONAL TRANSPORT

SciTech Connect

Dolence, Joshua C.; Burrows, Adam; Zhang, Weiqun E-mail: burrows@astro.princeton.edu

2015-02-10

We present new two-dimensional (2D) axisymmetric neutrino radiation/hydrodynamic models of core-collapse supernova (CCSN) cores. We use the CASTRO code, which incorporates truly multi-dimensional, multi-group, flux-limited diffusion (MGFLD) neutrino transport, including all relevant O(v/c) terms. Our main motivation for carrying out this study is to compare with recent 2D models produced by other groups who have obtained explosions for some progenitor stars and with recent 2D VULCAN results that did not incorporate O(v/c) terms. We follow the evolution of 12, 15, 20, and 25 solar-mass progenitors to approximately 600 ms after bounce and do not obtain an explosion in any of these models. Though the reason for the qualitative disagreement among the groups engaged in CCSN modeling remains unclear, we speculate that the simplifying ''ray-by-ray'' approach employed by all other groups may be compromising their results. We show that ''ray-by-ray'' calculations greatly exaggerate the angular and temporal variations of the neutrino fluxes, which we argue are better captured by our multi-dimensional MGFLD approach. On the other hand, our 2D models also make approximations, making it difficult to draw definitive conclusions concerning the root of the differences between groups. We discuss some of the diagnostics often employed in the analyses of CCSN simulations and highlight the intimate relationship between the various explosion conditions that have been proposed. Finally, we explore the ingredients that may be missing in current calculations that may be important in reproducing the properties of the average CCSNe, should the delayed neutrino-heating mechanism be the correct mechanism of explosion.

19. SOLVING THE TWO-DIMENSIONAL DIFFUSION FLOW MODEL.

USGS Publications Warehouse

1985-01-01

A simplification of the two-dimensional (2-D) continuity and momentum equations is the diffusion equation. To investigate its capability, the numerical model using the diffusion approach is applied to a hypothetical failure problem of a regional water reservoir. The model is based on an explicit, integrated finite-difference scheme, and the floodplain is simulated by a popular home computer which supports 64K FORTRAN. Though simple, the 2-D model can simulate some interesting flooding effects that a 1-D full dynamic model cannot.

20. Digital three-dimensional models of Drosophila development.

PubMed

Pereanu, Wayne; Hartenstein, Volker

2004-08-01

Digital models of organs, cells and subcellular structures have become important tools in biological and medical research. Reaching far beyond their traditional widespread use as didactic tools, computer-generated models serve as electronic atlases to identify specific elements in complex patterns, and as analytical tools that reveal relationships between such pattern elements that would remain obscure in two-dimensional sections. Digital models also offer the unique opportunity to store and display gene-expression patterns, and pilot studies have been made in several genetic model organisms, including mouse, Drosophila and Caenorhabditis elegans, to construct digital graphic databases intended as repositories for gene-expression data.

1. The XY model coupled to two-dimensional quantum gravity

Baillie, C. F.; Johnston, D. A.

1992-09-01

We perform Monte Carlo simulations using the Wolff cluster algorithm of the XY model on both fixed and dynamical phi-cubed graphs (i.e. without and with coupling to two-dimensional quantum gravity). We compare the numerical results with the theoretical expectation that the phase transition remains of KT type when the XY model is coupled to gravity. We also examine whether the universality we discovered in our earlier work on various Potts models with the same value of the central charge, c, carries over to the XY model, which has c=1.

2. Equation of State of the Two-Dimensional Hubbard Model

Cocchi, Eugenio; Miller, Luke A.; Drewes, Jan H.; Koschorreck, Marco; Pertot, Daniel; Brennecke, Ferdinand; Köhl, Michael

2016-04-01

The subtle interplay between kinetic energy, interactions, and dimensionality challenges our comprehension of strongly correlated physics observed, for example, in the solid state. In this quest, the Hubbard model has emerged as a conceptually simple, yet rich model describing such physics. Here we present an experimental determination of the equation of state of the repulsive two-dimensional Hubbard model over a broad range of interactions 0 ≲U /t ≲20 and temperatures, down to kBT /t =0.63 (2 ) using high-resolution imaging of ultracold fermionic atoms in optical lattices. We show density profiles, compressibilities, and double occupancies over the whole doping range, and, hence, our results constitute benchmarks for state-of-the-art theoretical approaches.

3. Equation of State of the Two-Dimensional Hubbard Model.

PubMed

Cocchi, Eugenio; Miller, Luke A; Drewes, Jan H; Koschorreck, Marco; Pertot, Daniel; Brennecke, Ferdinand; Köhl, Michael

2016-04-29

The subtle interplay between kinetic energy, interactions, and dimensionality challenges our comprehension of strongly correlated physics observed, for example, in the solid state. In this quest, the Hubbard model has emerged as a conceptually simple, yet rich model describing such physics. Here we present an experimental determination of the equation of state of the repulsive two-dimensional Hubbard model over a broad range of interactions 0≲U/t≲20 and temperatures, down to k_{B}T/t=0.63(2) using high-resolution imaging of ultracold fermionic atoms in optical lattices. We show density profiles, compressibilities, and double occupancies over the whole doping range, and, hence, our results constitute benchmarks for state-of-the-art theoretical approaches.

4. One-dimensional Kac model of dense amorphous hard spheres

Ikeda, H.; Ikeda, A.

2015-08-01

We introduce a new model of hard spheres under confinement for the study of the glass and jamming transitions. The model is a one-dimensional chain of the d-dimensional boxes each of which contains the same number of hard spheres, and the particles in the boxes of the ends of the chain are quenched at their equilibrium positions. We focus on the infinite-dimensional limit (d \\to ∞) of the model and analytically compute the glass transition densities using the replica liquid theory. From the chain length dependence of the transition densities, we extract the characteristic length scales at the glass transition. The divergence of the lengths are characterized by the two exponents, -1/4 for the dynamical transition and -1 for the ideal glass transition, which are consistent with those of the p-spin mean-field spin glass model. We also show that the model is useful for the study of the growing length scale at the jamming transition.

5. A three-dimensional model of Tangential YORP

SciTech Connect

Golubov, O.; Scheeres, D. J.; Krugly, Yu. N.

2014-10-10

Tangential YORP, or TYORP, has recently been demonstrated to be an important factor in the evolution of an asteroid's rotation state. It is complementary to normal YORP, or NYORP, which used to be considered previously. While NYORP is produced by non-symmetry in the large-scale geometry of an asteroid, TYORP is due to heat conductivity in stones on the surface of the asteroid. To date, TYORP has been studied only in a simplified one-dimensional model, substituting stones with high long walls. This article for the first time considers TYORP in a realistic three-dimensional model, also including shadowing and self-illumination effects via ray tracing. TYORP is simulated for spherical stones lying on regolith. The model includes only five free parameters and the dependence of the TYORP on each of them is studied. The TYORP torque appears to be smaller than previous estimates from the one-dimensional model, but is still comparable to the NYORP torques. These results can be used to estimate TYORP of different asteroids and also as a basis for more sophisticated models of TYORP.

6. A Three-dimensional Model of Tangential YORP

Golubov, O.; Scheeres, D. J.; Krugly, Yu. N.

2014-10-01

Tangential YORP, or TYORP, has recently been demonstrated to be an important factor in the evolution of an asteroid's rotation state. It is complementary to normal YORP, or NYORP, which used to be considered previously. While NYORP is produced by non-symmetry in the large-scale geometry of an asteroid, TYORP is due to heat conductivity in stones on the surface of the asteroid. To date, TYORP has been studied only in a simplified one-dimensional model, substituting stones with high long walls. This article for the first time considers TYORP in a realistic three-dimensional model, also including shadowing and self-illumination effects via ray tracing. TYORP is simulated for spherical stones lying on regolith. The model includes only five free parameters and the dependence of the TYORP on each of them is studied. The TYORP torque appears to be smaller than previous estimates from the one-dimensional model, but is still comparable to the NYORP torques. These results can be used to estimate TYORP of different asteroids and also as a basis for more sophisticated models of TYORP.

7. Dimensional reduction of the Standard Model coupled to a new singlet scalar field

Brauner, Tomáš; Tenkanen, Tuomas V. I.; Tranberg, Anders; Vuorinen, Aleksi; Weir, David J.

2017-03-01

We derive an effective dimensionally reduced theory for the Standard Model augmented by a real singlet scalar. We treat the singlet as a superheavy field and integrate it out, leaving an effective theory involving only the Higgs and SU(2) L × U(1) Y gauge fields, identical to the one studied previously for the Standard Model. This opens up the possibility of efficiently computing the order and strength of the electroweak phase transition, numerically and nonperturbatively, in this extension of the Standard Model. Understanding the phase diagram is crucial for models of electroweak baryogenesis and for studying the production of gravitational waves at thermal phase transitions.

8. A three-dimensional spin-diffusion model for micromagnetics.

PubMed

Abert, Claas; Ruggeri, Michele; Bruckner, Florian; Vogler, Christoph; Hrkac, Gino; Praetorius, Dirk; Suess, Dieter

2015-10-07

We solve a time-dependent three-dimensional spin-diffusion model coupled to the Landau-Lifshitz-Gilbert equation numerically. The presented model is validated by comparison to two established spin-torque models: The model of Slonzewski that describes spin-torque in multi-layer structures in the presence of a fixed layer and the model of Zhang and Li that describes current driven domain-wall motion. It is shown that both models are incorporated by the spin-diffusion description, i.e., the nonlocal effects of the Slonzewski model are captured as well as the spin-accumulation due to magnetization gradients as described by the model of Zhang and Li. Moreover, the presented method is able to resolve the time dependency of the spin-accumulation.

9. A three-dimensional spin-diffusion model for micromagnetics

PubMed Central

Abert, Claas; Ruggeri, Michele; Bruckner, Florian; Vogler, Christoph; Hrkac, Gino; Praetorius, Dirk; Suess, Dieter

2015-01-01

We solve a time-dependent three-dimensional spin-diffusion model coupled to the Landau-Lifshitz-Gilbert equation numerically. The presented model is validated by comparison to two established spin-torque models: The model of Slonzewski that describes spin-torque in multi-layer structures in the presence of a fixed layer and the model of Zhang and Li that describes current driven domain-wall motion. It is shown that both models are incorporated by the spin-diffusion description, i.e., the nonlocal effects of the Slonzewski model are captured as well as the spin-accumulation due to magnetization gradients as described by the model of Zhang and Li. Moreover, the presented method is able to resolve the time dependency of the spin-accumulation. PMID:26442796

10. Macroinvertebrate response to flow changes in a subalpine stream: predictions from two-dimensional hydrodynamic models

USGS Publications Warehouse

2013-01-01

Two-dimensional hydrodynamic models are being used increasingly as alternatives to traditional one-dimensional instream flow methodologies for assessing adequacy of flow and associated faunal habitat. Two-dimensional modelling of habitat has focused primarily on fishes, but fish-based assessments may not model benthic macroinvertebrate habitat effectively. We extend two-dimensional techniques to a macroinvertebrate assemblage in a high-elevation stream in the Sierra Nevada (Dana Fork of the Tuolumne River, Yosemite National Park, CA, USA). This stream frequently flows at less than 0.03?m3?s?1 in late summer and is representative of a common water abstraction scenario: maximum water abstraction coinciding with seasonally low flows. We used two-dimensional modelling to predict invertebrate responses to reduced flows that might result from increased abstraction. We collected site-specific field data on the macroinvertebrate assemblage, bed topography and flow conditions and then coupled a two-dimensional hydrodynamic model with macroinvertebrate indices to evaluate habitat across a range of low flows. Macroinvertebrate indices were calculated for the wetted area at each flow. A surrogate flow record based on an adjacent watershed was used to evaluate frequency and duration of low flow events. Using surrogate historical records, we estimated that flow should fall below 0.071?m3?s?1 at least 1?day in 82 of 95?years and below 0.028?m3?s?1 in 48 of 95?years. Invertebrate metric means indicated minor losses in response to modelled discharge reductions, but wetted area decreased substantially. Responses of invertebrates to water abstraction will likely be a function of changing habitat quantity rather than quality.

11. Two dimensional hydrodynamic modeling of a high latitude braided river

Humphries, E.; Pavelsky, T.; Bates, P. D.

2014-12-01

Rivers are a fundamental resource to physical, ecologic and human systems, yet quantification of river flow in high-latitude environments remains limited due to the prevalence of complex morphologies, remote locations and sparse in situ monitoring equipment. Advances in hydrodynamic modeling and remote sensing technology allow us to address questions such as: How well can two-dimensional models simulate a flood wave in a highly 3-dimensional braided river environment, and how does the structure of such a flood wave differ from flow down a similar-sized single-channel river? Here, we use the raster-based hydrodynamic model LISFLOOD-FP to simulate flood waves, discharge, water surface height, and velocity measurements over a ~70 km reach of the Tanana River in Alaska. In order to use LISFLOOD-FP a digital elevation model (DEM) fused with detailed bathymetric data is required. During summer 2013, we surveyed 220,000 bathymetric points along the study reach using an echo sounder system connected to a high-precision GPS unit. The measurements are interpolated to a smooth bathymetric surface, using Topo to Raster interpolation, and combined with an existing five meter DEM (Alaska IfSAR) to create a seamless river terrain model. Flood waves are simulated using varying complexities in model solvers, then compared to gauge records and water logger data to assess major sources of model uncertainty. Velocity and flow direction maps are also assessed and quantified for detailed analysis of braided channel flow. The most accurate model output occurs with using the full two-dimensional model structure, and major inaccuracies appear to be related to DEM quality and roughness values. Future work will intercompare model outputs with extensive ground measurements and new data from AirSWOT, an airborne analog for the Surface Water and Ocean Topography (SWOT) mission, which aims to provide high-resolution measurements of terrestrial and ocean water surface elevations globally.

12. Analysis of necking based on a one-dimensional model

Audoly, Basile; Hutchinson, John W.

2016-12-01

Dimensional reduction is applied to derive a one-dimensional energy functional governing tensile necking localization in a family of initially uniform prismatic solids, including as particular cases rectilinear blocks in plane strain and cylindrical bars undergoing axisymmetric deformations. The energy functional depends on both the axial stretch and its gradient. The coefficient of the gradient term is derived in an exact and general form. The one-dimensional model is used to analyze necking localization for nonlinear elastic materials that experience a maximum load under tensile loading, and for a class of nonlinear materials that mimic elastic-plastic materials by displaying a linear incremental response when stretch switches from increasing to decreasing. Bifurcation predictions for the onset of necking from the simplified theory compared with exact results suggest the approach is highly accurate at least when the departures from uniformity are not too large. Post-bifurcation behavior is analyzed to the point where the neck is fully developed and localized to a region on the order of the thickness of the block or bar. Applications to the nonlinear elastic and elastic-plastic materials reveal the highly unstable nature of necking for the former and the stable behavior for the latter, except for geometries where the length of the block or bar is very large compared to its thickness. A formula for the effective stress reduction at the center of a neck is established based on the one-dimensional model, which is similar to that suggested by Bridgman (1952).

13. Numerical simulations of a reduced model for blood coagulation

Pavlova, Jevgenija; Fasano, Antonio; Sequeira, Adélia

2016-04-01

In this work, the three-dimensional numerical resolution of a complex mathematical model for the blood coagulation process is presented. The model was illustrated in Fasano et al. (Clin Hemorheol Microcirc 51:1-14, 2012), Pavlova et al. (Theor Biol 380:367-379, 2015). It incorporates the action of the biochemical and cellular components of blood as well as the effects of the flow. The model is characterized by a reduction in the biochemical network and considers the impact of the blood slip at the vessel wall. Numerical results showing the capacity of the model to predict different perturbations in the hemostatic system are discussed.

14. Fermion masses and mixing in general warped extra dimensional models

Frank, Mariana; Hamzaoui, Cherif; Pourtolami, Nima; Toharia, Manuel

2015-06-01

We analyze fermion masses and mixing in a general warped extra dimensional model, where all the Standard Model (SM) fields, including the Higgs, are allowed to propagate in the bulk. In this context, a slightly broken flavor symmetry imposed universally on all fermion fields, without distinction, can generate the full flavor structure of the SM, including quarks, charged leptons and neutrinos. For quarks and charged leptons, the exponential sensitivity of their wave functions to small flavor breaking effects yield hierarchical masses and mixing as it is usual in warped models with fermions in the bulk. In the neutrino sector, the exponential wave-function factors can be flavor blind and thus insensitive to the small flavor symmetry breaking effects, directly linking their masses and mixing angles to the flavor symmetric structure of the five-dimensional neutrino Yukawa couplings. The Higgs must be localized in the bulk and the model is more successful in generalized warped scenarios where the metric background solution is different than five-dimensional anti-de Sitter (AdS5 ). We study these features in two simple frameworks, flavor complimentarity and flavor democracy, which provide specific predictions and correlations between quarks and leptons, testable as more precise data in the neutrino sector becomes available.

15. Numerical solutions of the three-dimensional magnetohydrodynamic alpha model.

PubMed

Mininni, Pablo D; Montgomery, David C; Pouquet, Annick

2005-04-01

We present direct numerical simulations and alpha -model simulations of four familiar three-dimensional magnetohydrodynamic (MHD) turbulence effects: selective decay, dynamic alignment, inverse cascade of magnetic helicity, and the helical dynamo effect. The MHD alpha model is shown to capture the long-wavelength spectra in all these problems, allowing for a significant reduction of computer time and memory at the same kinetic and magnetic Reynolds numbers. In the helical dynamo, not only does the alpha model correctly reproduce the growth rate of magnetic energy during the kinematic regime, it also captures the nonlinear saturation level and the late generation of a large scale magnetic field by the helical turbulence.

16. A Three-dimensional Topological Model of Ternary Phase Diagram

Mu, Yingxue; Bao, Hong

2017-01-01

In order to obtain a visualization of the complex internal structure of ternary phase diagram, the paper realized a three-dimensional topology model of ternary phase diagram with the designed data structure and improved algorithm, under the guidance of relevant theories of computer graphics. The purpose of the model is mainly to analyze the relationship between each phase region of a ternary phase diagram. The model not only obtain isothermal section graph at any temperature, but also extract a particular phase region in which users are interested.

17. Three-dimensional modeling of propagating precipitation waves.

PubMed

Tinsley, Mark R; Collison, Darrell; Showalter, Kenneth

2015-06-01

A general three-dimensional model for propagating precipitation waves is presented. Structural features identified in experimental studies of propagating waves in the AlCl3/NaOH and NaAl(OH)4/HCl systems are described by the 3D model. Two forms of precipitate with different physical properties play key mechanistic roles in the wave propagation. Experimentally observed circular and spiral waves are simulated by the 3D model, as well as wave annihilation on the collision of two waves.

18. New data assimilation system DNDAS for high-dimensional models

Qun-bo, Huang; Xiao-qun, Cao; Meng-bin, Zhu; Wei-min, Zhang; Bai-nian, Liu

2016-05-01

The tangent linear (TL) models and adjoint (AD) models have brought great difficulties for the development of variational data assimilation system. It might be impossible to develop them perfectly without great efforts, either by hand, or by automatic differentiation tools. In order to break these limitations, a new data assimilation system, dual-number data assimilation system (DNDAS), is designed based on the dual-number automatic differentiation principles. We investigate the performance of DNDAS with two different optimization schemes and subsequently give a discussion on whether DNDAS is appropriate for high-dimensional forecast models. The new data assimilation system can avoid the complicated reverse integration of the adjoint model, and it only needs the forward integration in the dual-number space to obtain the cost function and its gradient vector concurrently. To verify the correctness and effectiveness of DNDAS, we implemented DNDAS on a simple ordinary differential model and the Lorenz-63 model with different optimization methods. We then concentrate on the adaptability of DNDAS to the Lorenz-96 model with high-dimensional state variables. The results indicate that whether the system is simple or nonlinear, DNDAS can accurately reconstruct the initial condition for the forecast model and has a strong anti-noise characteristic. Given adequate computing resource, the quasi-Newton optimization method performs better than the conjugate gradient method in DNDAS. Project supported by the National Natural Science Foundation of China (Grant Nos. 41475094 and 41375113).

19. Modelling Three-Dimensional Sound Propagation in Wedge Environments

Austin, Melanie Elizabeth

Ocean environments with sloped seafloors can give rise to sound paths that do not remain in a constant plane of propagation. Numerical modelling of sound fields in such environments requires the use of computer models that fully account for out-of-plane sound propagation effects. The inclusion of these three-dimensional effects can be computationally intensive and the effects are often neglected in computer sound propagation codes. The current state-of-the art in sound propagation modelling has seen the development of models that can fully account for out-of-plane sound propagation. Such a model has been implemented in this research to provide acoustic consultants JASCO Applied Sciences with an important tool for environmental noise impact assessment in complicated marine environments. The model is described and validation results are shown for benchmark test cases. The model is also applied to study three-dimensional propagation effects in measured data from a realistic ocean environment. Particular analysis techniques assist in the interpretation of the modelled sound field for this physical test environment providing new insight into the characteristics of the test environment.

20. A THREE-DIMENSIONAL BABCOCK-LEIGHTON SOLAR DYNAMO MODEL

SciTech Connect

Miesch, Mark S.; Dikpati, Mausumi

2014-04-10

We present a three-dimensional (3D) kinematic solar dynamo model in which poloidal field is generated by the emergence and dispersal of tilted sunspot pairs (more generally bipolar magnetic regions, or BMRs). The axisymmetric component of this model functions similarly to previous 2.5 dimensional (2.5D, axisymmetric) Babcock-Leighton (BL) dynamo models that employ a double-ring prescription for poloidal field generation but we generalize this prescription into a 3D flux emergence algorithm that places BMRs on the surface in response to the dynamo-generated toroidal field. In this way, the model can be regarded as a unification of BL dynamo models (2.5D in radius/latitude) and surface flux transport models (2.5D in latitude/longitude) into a more self-consistent framework that builds on the successes of each while capturing the full 3D structure of the evolving magnetic field. The model reproduces some basic features of the solar cycle including an 11 yr periodicity, equatorward migration of toroidal flux in the deep convection zone, and poleward propagation of poloidal flux at the surface. The poleward-propagating surface flux originates as trailing flux in BMRs, migrates poleward in multiple non-axisymmetric streams (made axisymmetric by differential rotation and turbulent diffusion), and eventually reverses the polar field, thus sustaining the dynamo. In this Letter we briefly describe the model, initial results, and future plans.

1. A Three-dimensional Babcock-Leighton Solar Dynamo Model

Miesch, Mark S.; Dikpati, Mausumi

2014-04-01

We present a three-dimensional (3D) kinematic solar dynamo model in which poloidal field is generated by the emergence and dispersal of tilted sunspot pairs (more generally bipolar magnetic regions, or BMRs). The axisymmetric component of this model functions similarly to previous 2.5 dimensional (2.5D, axisymmetric) Babcock-Leighton (BL) dynamo models that employ a double-ring prescription for poloidal field generation but we generalize this prescription into a 3D flux emergence algorithm that places BMRs on the surface in response to the dynamo-generated toroidal field. In this way, the model can be regarded as a unification of BL dynamo models (2.5D in radius/latitude) and surface flux transport models (2.5D in latitude/longitude) into a more self-consistent framework that builds on the successes of each while capturing the full 3D structure of the evolving magnetic field. The model reproduces some basic features of the solar cycle including an 11 yr periodicity, equatorward migration of toroidal flux in the deep convection zone, and poleward propagation of poloidal flux at the surface. The poleward-propagating surface flux originates as trailing flux in BMRs, migrates poleward in multiple non-axisymmetric streams (made axisymmetric by differential rotation and turbulent diffusion), and eventually reverses the polar field, thus sustaining the dynamo. In this Letter we briefly describe the model, initial results, and future plans.

2. HIGH DIMENSIONAL COVARIANCE MATRIX ESTIMATION IN APPROXIMATE FACTOR MODELS

PubMed Central

Fan, Jianqing; Liao, Yuan; Mincheva, Martina

2012-01-01

The variance covariance matrix plays a central role in the inferential theories of high dimensional factor models in finance and economics. Popular regularization methods of directly exploiting sparsity are not directly applicable to many financial problems. Classical methods of estimating the covariance matrices are based on the strict factor models, assuming independent idiosyncratic components. This assumption, however, is restrictive in practical applications. By assuming sparse error covariance matrix, we allow the presence of the cross-sectional correlation even after taking out common factors, and it enables us to combine the merits of both methods. We estimate the sparse covariance using the adaptive thresholding technique as in Cai and Liu (2011), taking into account the fact that direct observations of the idiosyncratic components are unavailable. The impact of high dimensionality on the covariance matrix estimation based on the factor structure is then studied. PMID:22661790

3. HIGH DIMENSIONAL COVARIANCE MATRIX ESTIMATION IN APPROXIMATE FACTOR MODELS.

PubMed

Fan, Jianqing; Liao, Yuan; Mincheva, Martina

2011-01-01

The variance covariance matrix plays a central role in the inferential theories of high dimensional factor models in finance and economics. Popular regularization methods of directly exploiting sparsity are not directly applicable to many financial problems. Classical methods of estimating the covariance matrices are based on the strict factor models, assuming independent idiosyncratic components. This assumption, however, is restrictive in practical applications. By assuming sparse error covariance matrix, we allow the presence of the cross-sectional correlation even after taking out common factors, and it enables us to combine the merits of both methods. We estimate the sparse covariance using the adaptive thresholding technique as in Cai and Liu (2011), taking into account the fact that direct observations of the idiosyncratic components are unavailable. The impact of high dimensionality on the covariance matrix estimation based on the factor structure is then studied.

4. Three-dimensional radiation transfer modeling in a dicotyledon leaf

Govaerts, Yves M.; Jacquemoud, Stéphane; Verstraete, Michel M.; Ustin, Susan L.

1996-11-01

The propagation of light in a typical dicotyledon leaf is investigated with a new Monte Carlo ray-tracing model. The three-dimensional internal cellular structure of the various leaf tissues, including the epidermis, the palisade parenchyma, and the spongy mesophyll, is explicitly described. Cells of different tissues are assigned appropriate morphologies and contain realistic amounts of water and chlorophyll. Each cell constituent is characterized by an index of refraction and an absorption coefficient. The objective of this study is to investigate how the internal three-dimensional structure of the tissues and the optical properties of cell constituents control the reflectance and transmittance of the leaf. Model results compare favorably with laboratory observations. The influence of the roughness of the epidermis on the reflection and absorption of light is investigated, and simulation results confirm that convex cells in the epidermis focus light on the palisade parenchyma and increase the absorption of radiation.

5. Investigation on the Practicality of Developing Reduced Thermal Models

NASA Technical Reports Server (NTRS)

Lombardi, Giancarlo; Yang, Kan

2015-01-01

Throughout the spacecraft design and development process, detailed instrument thermal models are created to simulate their on-orbit behavior and to ensure that they do not exceed any thermal limits. These detailed models, while generating highly accurate predictions, can sometimes lead to long simulation run times, especially when integrated with a spacecraft observatory model. Therefore, reduced models containing less detail are typically produced in tandem with the detailed models so that results may be more readily available, albeit less accurate. In the current study, both reduced and detailed instrument models are integrated with their associated spacecraft bus models to examine the impact of instrument model reduction on run time and accuracy. Preexisting instrument bus thermal model pairs from several projects were used to determine trends between detailed and reduced thermal models; namely, the Mirror Optical Bench (MOB) on the Gravity and Extreme Magnetism Small Explorer (GEMS) spacecraft, Advanced Topography Laser Altimeter System (ATLAS) on the Ice, Cloud, and Elevation Satellite 2 (ICESat-2), and the Neutral Mass Spectrometer (NMS) on the Lunar Atmosphere and Dust Environment Explorer (LADEE). Hot and cold cases were run for each model to capture the behavior of the models at both thermal extremes. It was found that, though decreasing the number of nodes from a detailed to reduced model brought about a reduction in the run-time, a large time savings was not observed, nor was it a linear relationship between the percentage of nodes reduced and time saved. However, significant losses in accuracy were observed with greater model reduction. It was found that while reduced models are useful in decreasing run time, there exists a threshold of reduction where, once exceeded, the loss in accuracy outweighs the benefit from reduced model runtime.

6. A Three Dimensional Non-Singular Modelling of Rigid Manipulators.

DTIC Science & Technology

1987-12-01

511111 OTC FILE COPY (1) ’ NAVAL POSTGRADUATE SCHOOL 0 ’ Monterey, California IDTIC I{ IELECTE S MAR 08 8 f 0? THESIS A THREE DIMENSIONAL NON-SINGULAR...MODELLING OF RIGID MANIPULATORS by Sadrettin Altinok December 1987 Thesis Advisor D.L. Smith Approved for public release; distribution is unlimited. 88...MASTERS THESIS FROM _ TO 1987 DECEMBER iC 6 16 SUPPLEMENTARY NOTATION 17 COSA T i CODES 18 SUBJECT TERMS (Continue on reverse f necessary and identify by

7. Multiple Potts models coupled to two-dimensional quantum gravity

Baillie, C. F.; Johnston, D. A.

1992-07-01

We perform Monte Carlo simulations using the Wolff cluster algorithm of multiple q=2, 3, 4 state Potts models on dynamical phi-cubed graphs of spherical topology in order to investigate the c>1 region of two-dimensional quantum gravity. Contrary to naive expectation we find no obvious signs of pathological behaviour for c>1. We discuss the results in the light of suggestions that have been made for a modified DDK ansatz for c>1.

8. Two-Dimensional Modeling Of Contrast-Enhanced Lithography

Griffing, B. F.; Lorensen, W. E.

1984-05-01

The aerial image produced by projection mask aligners can be readily visualized using high resolution computer graphics. This paper describes a computer model that calculates the aerial image using a mask pattern and the optical system characteristics as input. The program converts the digital result into a grey scale image. This image is an accu-rate representation of the image the photoresist actually "sees." The model is applied to contrast-enhanced lithography (CEL).1120 By combining the aerial image model with the known bleaching behavior of CEL materials it is possible to calculate the image intensity transmitted by the bleachable layer as a function of time. This result is presented in the form a computer-generated movie, which makes apparent the high contrast of the transmitted image. A second application of the aerial image model is to two-dimensional resist pattern modeling. Although not as sophisticated as SAMPLE4 this model is capable of modeling com-plete structures, such as a dynamic RAM cell. The output of the model is a three-dimensional surface which is displayed using a computer-generated, shaded surface. Linewidth variation with exposure is easily explored with this model. It is a best case model in that it assumes ideal optics and resist development conditions. Resist thickness is calculated using an experimentally determined thickness transfer function. These assumptions are necessary in order to minimize the time necessary for performing the calculations. The model calculates a pattern on a 512 X 512 point array from an image in 1-2 min. on a VAX-780. Since ideal conditions are assumed, the utility of the model is primarily in its ability to predict when a structure is beyond the limits of a given optical system. Applications of the model to CEL will be presented.

9. Two-dimensional XXZ-Ising model with quartic interactions.

PubMed

Valverde, J S

2012-05-01

In this work we study a two-dimensional XXZ-Ising spin-1/2 model with quartic interactions. The model is composed of a two-dimensional lattice of edge-sharing unitary cells, where each cell consists of two triangular prisms, converging in a basal plane with four Ising spin-1/2 (open circles); the apical positions are also occupied by four Heisenberg spin-1/2 (solid circles). Interaction of the base plane containing the multispin Ising interaction has the parameter J_{4}, and the other pairwise interactions have parameter J. For the proposed model we construct the phase diagram at zero temperature and give all possible spin configurations. In addition, we investigate two regions where the model can be solved exactly, the free fermion condition (FFC) and the symmetrical eight-vertex condition (SEVC). For this purpose we perform a straightforward mapping for a zero-field eight-vertex model. The necessary conditions for the equivalence are analyzed for all ranges of the interaction parameters. Unfortunately, the present model does not satisfy the FFC unless the trivial case; however, it was possible to give a region where the model can be solved approximately. We study the SEVC and verify that this condition is always satisfied. We also explore and discuss the critical conditions giving the region where these critical points are relevant.

10. An algebraic turbulence model for three-dimensional viscous flows

NASA Technical Reports Server (NTRS)

Chima, R. V.; Giel, P. W.; Boyle, R. J.

1993-01-01

An algebraic turbulence model is proposed for use with three-dimensional Navier-Stokes analyses. It incorporates features of both the Baldwin-Lomax and Cebeci-Smith models. The Baldwin-Lomax model uses the maximum of a function f(y) to determine length and velocity scales. An analysis of the Baldwin-Lomax model shows that f(y) can have a spurious maximum close to the wall, causing numerical problems and non-physical results. The proposed model uses integral relations to determine delta(*) u(sub e) and delta used in the Cebeci-Smith mode. It eliminates a constant in the Baldwin-Lomax model and determines the two remaining constants by comparison to the Cebeci-Smith formulation. Pressure gradient effects, a new wake model, and the implementation of these features in a three-dimensional Navier-Stokes code are also described. Results are shown for a flat plate boundary layer, an annular turbine cascade, and endwall heat transfer in a linear turbine cascade. The heat transfer results agree well with experimental data which shows large variations in endwall Stanton number contours with Reynolds number.

11. Tipping Points in 1-Dimensional Schelling Models with Switching Agents

Barmpalias, George; Elwes, Richard; Lewis-Pye, Andy

2015-02-01

Schelling's spacial proximity model was an early agent-based model, illustrating how ethnic segregation can emerge, unwanted, from the actions of citizens acting according to individual local preferences. Here a 1-dimensional unperturbed variant is studied under switching agent dynamics, interpretable as being open in that agents may enter and exit the model. Following the authors' work (Barmpalias et al., FOCS, 2014) and that of Brandt et al. (Proceedings of the 44th ACM Symposium on Theory of Computing (STOC 2012), 2012), rigorous asymptotic results are established. The dynamic allows either type to take over almost everywhere. Tipping points are identified between the regions of takeover and staticity. In a generalization of the models considered in [1] and [3], the model's parameters comprise the initial proportions of the two types, along with independent values of the tolerance for each type. This model comprises a 1-dimensional spin-1 model with spin dependent external field, as well as providing an example of cascading behaviour within a network.

12. Digital vision system for three-dimensional model acquisition

Yuan, Ta; Lin, Huei-Yung; Qin, Xiangdong; Subbarao, Murali

2000-10-01

A digital vision system and the computational algorithms used by the system for three-dimensional (3D) model acquisition are described. The system is named Stonybrook VIsion System (SVIS). The system can acquire the 3D model (which includes the 3D shape and the corresponding image texture) of a simple object within a 300 mm X 300 mm X 300 mm volume placed about 600 mm from the system. SVIS integrates Image Focus Analysis (IFA) and Stereo Image Analysis (SIA) techniques for 3D shape and image texture recovery. First, 4 to 8 partial 3D models of the object are obtained from 4 to 8 views of the object. The partial models are then integrated to obtain a complete model of the object. The complete model is displayed using a 3D graphics rendering software (Apple's QuickDraw). Experimental results on several objects are presented.

13. An introduction to three-dimensional climate modeling

NASA Technical Reports Server (NTRS)

Washington, W. M.; Parkinson, C. L.

1986-01-01

The development and use of three-dimensional computer models of the earth's climate are discussed. The processes and interactions of the atmosphere, oceans, and sea ice are examined. The basic theory of climate simulation which includes the fundamental equations, models, and numerical techniques for simulating the atmosphere, oceans, and sea ice is described. Simulated wind, temperature, precipitation, ocean current, and sea ice distribution data are presented and compared to observational data. The responses of the climate to various environmental changes, such as variations in solar output or increases in atmospheric carbon dioxide, are modeled. Future developments in climate modeling are considered. Information is also provided on the derivation of the energy equation, the finite difference barotropic forecast model, the spectral transform technique, and the finite difference shallow water waved equation model.

14. One-dimensional GIS-based model compared with a two-dimensional model in urban floods simulation.

PubMed

Lhomme, J; Bouvier, C; Mignot, E; Paquier, A

2006-01-01

A GIS-based one-dimensional flood simulation model is presented and applied to the centre of the city of Nîmes (Gard, France), for mapping flow depths or velocities in the streets network. The geometry of the one-dimensional elements is derived from the Digital Elevation Model (DEM). The flow is routed from one element to the next using the kinematic wave approximation. At the crossroads, the flows in the downstream branches are computed using a conceptual scheme. This scheme was previously designed to fit Y-shaped pipes junctions, and has been modified here to fit X-shaped crossroads. The results were compared with the results of a two-dimensional hydrodynamic model based on the full shallow water equations. The comparison shows that good agreements can be found in the steepest streets of the study zone, but differences may be important in the other streets. Some reasons that can explain the differences between the two models are given and some research possibilities are proposed.

15. One-dimensional nonlinear elastodynamic models and their local conservation laws with applications to biological membranes.

PubMed

Cheviakov, A F; Ganghoffer, J-F

2016-05-01

The framework of incompressible nonlinear hyperelasticity and viscoelasticity is applied to the derivation of one-dimensional models of nonlinear wave propagation in fiber-reinforced elastic solids. Equivalence transformations are used to simplify the resulting wave equations and to reduce the number of parameters. Local conservation laws and global conserved quantities of the models are systematically computed and discussed, along with other related mathematical properties. Sample numerical solutions are presented. The models considered in the paper are appropriate for the mathematical description of certain aspects of the behavior of biological membranes and similar structures.

16. Signatures from an extra-dimensional seesaw model

SciTech Connect

Blennow, Mattias; Melbeus, Henrik; Ohlsson, Tommy; Zhang He

2010-08-15

We study the generation of small neutrino masses in an extra-dimensional model, where singlet fermions are allowed to propagate in the extra dimension, while the standard model particles are confined to a brane. Motivated by the fact that extra-dimensional models are nonrenormalizable, we truncate the Kaluza-Klein towers at a maximal Kaluza-Klein number. This truncation, together with the structure of the bulk Majorana mass term, motivated by the Sherk-Schwarz mechanism, implies that the Kaluza-Klein modes of the singlet fermions pair to form Dirac fermions, except for a number of unpaired Majorana fermions at the top of each tower. These heavy Majorana fermions are the only sources of lepton number breaking in the model, and similarly to the type-I seesaw mechanism, they naturally generate small masses for the left-handed neutrinos. The lower Kaluza-Klein modes mix with the light neutrinos, and the mixing effects are not suppressed with respect to the light-neutrino masses. Compared to conventional fermionic seesaw models, such mixing can be more significant. We study the signals of this model at the Large Hadron Collider, and find that the current low-energy bounds on the nonunitarity of the leptonic mixing matrix are strong enough to exclude an observation.

17. Three-dimensional Model of Tissue and Heavy Ions Effects

NASA Technical Reports Server (NTRS)

Ponomarev, Artem L.; Sundaresan, Alamelu; Huff, Janice L.; Cucinotta, Francis A.

2007-01-01

A three-dimensional tissue model was incorporated into a new Monte Carlo algorithm that simulates passage of heavy ions in a tissue box . The tissue box was given as a realistic model of tissue based on confocal microscopy images. The action of heavy ions on the cellular matrix for 2- or 3-dimensional cases was simulated. Cells were modeled as a cell culture monolayer in one example, where the data were taken directly from microscopy (2-d cell matrix), and as a multi-layer obtained from confocal microscopy (3-d case). Image segmentation was used to identify cells with precise areas/volumes in an irradiated cell culture monolayer, and slices of tissue with many cell layers. The cells were then inserted into the model box of the simulated physical space pixel by pixel. In the case of modeled tissues (3-d), the tissue box had periodic boundary conditions imposed, which extrapolates the technique to macroscopic volumes of tissue. For the real tissue (3-d), specific spatial patterns for cell apoptosis and necrosis are expected. The cell patterns were modeled based on action cross sections for apoptosis and necrosis estimated from current experimental data. A spatial correlation function indicating a higher spatial concentration of damaged cells from heavy ions relative to the low-LET radiation cell damage pattern is presented. The spatial correlation effects among necrotic cells can help studying microlesions in organs, and probable effects of directionality of heavy ion radiation on epithelium and endothelium.

18. Reduced-order model of fish-like swimming due to shedding of unsteady point vortices

2013-11-01

Reduced order models of biomimetic swimming in an ideal fluid, relying on the shedding of point vortices at short intervals of time, are useful to illuminate the essential underlying dynamics of locomotion in fluids. However these reduced order models still possess a state space that is very high dimensional, thus presenting challenges to develop control algorithms. A two-dimensional model that fully couples the motion of the solid boundary and the fluid containing singular distributions of vorticity is presented. The model relies on the shedding of unsteady point vortices, from the tip of a fish-like hydrofoil, in place of many steady point vortices. The subsequent reduction in the dimension of the state space makes the model more amenable to control algorithms. A simple case of the heading-angle control of a fish-like body will be illustrated. The model also has the advantage of being computationally significantly less demanding. More interestingly from a theoretical point of view, the reduced order model illustrates the connection between vortex shedding and velocity constraints encountered in rigid body mechanics.

19. The Dimensional Nature of Externalizing Behaviors in Adolescence: Evidence from a Direct Comparison of Categorical, Dimensional, and Hybrid Models

ERIC Educational Resources Information Center

Walton, Kate E.; Ormel, Johan; Krueger, Robert F.

2011-01-01

Researchers have recognized the importance of developing an accurate classification system for externalizing disorders, though much of this work has been framed by a priori preferences for categorical vs. dimensional constructs. Newer statistical technologies now allow categorical and dimensional models of psychopathology to be compared…

20. Three-dimensional nanojunction device models for photovoltaics

Wangperawong, Artit; Bent, Stacey F.

2011-06-01

A model is developed to describe the behavior of three-dimensionally nanostructured photovoltaic devices, distinguishing between isolated radial pn junctions and interdigitated pn junctions. We examine two specific interdigitated architectures, the point-contact nanojunction and the extended nanojunction, which are most relevant to experimental devices reported to date but have yet to be distinguished in the field. The model is also applied to polycrystalline CdTe devices with inverted grain boundaries. We demonstrate that for CdTe/CdS solar cells using low-quality materials, the efficiency of the extended nanojunction geometry is superior to other designs considered.

1. A six-dimensional Jordan model for electroweak interactions

Martínez Merino, Aldo; Obregon, Octavio

2014-03-01

We present a model for the electroweak interactions based on the commutative but non-associative exceptional Jordan algebra of Hermitian matrices valued on the octonions. By this means, we propose a construction of a gauge theory which take values in this algebra. Following closely the six-dimensional model proposed by D. Fairlie years ago and using a supergroup, we found a natural structure that provides the weak interaction action with some additional terms; we will briefly comment on their possible meaning. Postdoctoral Fellow at Universidad de Guanajuato.

2. A Multi-Dimensional Classification Model for Scientific Workflow Characteristics

SciTech Connect

Ramakrishnan, Lavanya; Plale, Beth

2010-04-05

Workflows have been used to model repeatable tasks or operations in manufacturing, business process, and software. In recent years, workflows are increasingly used for orchestration of science discovery tasks that use distributed resources and web services environments through resource models such as grid and cloud computing. Workflows have disparate re uirements and constraints that affects how they might be managed in distributed environments. In this paper, we present a multi-dimensional classification model illustrated by workflow examples obtained through a survey of scientists from different domains including bioinformatics and biomedical, weather and ocean modeling, astronomy detailing their data and computational requirements. The survey results and classification model contribute to the high level understandingof scientific workflows.

3. Two-Dimensional Quantum Model of a Nanotransistor

NASA Technical Reports Server (NTRS)

Govindan, T. R.; Biegel, B.; Svizhenko, A.; Anantram, M. P.

2009-01-01

A mathematical model, and software to implement the model, have been devised to enable numerical simulation of the transport of electric charge in, and the resulting electrical performance characteristics of, a nanotransistor [in particular, a metal oxide/semiconductor field-effect transistor (MOSFET) having a channel length of the order of tens of nanometers] in which the overall device geometry, including the doping profiles and the injection of charge from the source, gate, and drain contacts, are approximated as being two-dimensional. The model and software constitute a computational framework for quantitatively exploring such device-physics issues as those of source-drain and gate leakage currents, drain-induced barrier lowering, and threshold voltage shift due to quantization. The model and software can also be used as means of studying the accuracy of quantum corrections to other semiclassical models.

4. Three Dimensional Modeling of an MRI Actuated Steerable Catheter System.

PubMed

Liu, Taoming; Cavuşoğlu, M Cenk

2014-01-01

This paper presents the three dimensional kinematic modeling of a novel steerable robotic ablation catheter system. The catheter, embedded with a set of current-carrying micro-coils, is actuated by the magnetic forces generated by the magnetic field of the MRI scanner. This paper develops a 3D model of the MRI actuated steerable catheter system by using finite differences approach. For each finite segment, a quasi-static torque-deflection equilibrium equation is calculated using beam theory. By using the deflection displacements and torsion angles, the kinematic modeling of the catheter system is derived. The proposed models are evaluated by comparing the simulation results of the proposed model with the experimental results of a proof-of-concept prototype.

5. Three Dimensional Modeling of an MRI Actuated Steerable Catheter System

PubMed Central

Liu, Taoming; Çavuşoğlu, M. Cenk

2014-01-01

This paper presents the three dimensional kinematic modeling of a novel steerable robotic ablation catheter system. The catheter, embedded with a set of current-carrying micro-coils, is actuated by the magnetic forces generated by the magnetic field of the MRI scanner. This paper develops a 3D model of the MRI actuated steerable catheter system by using finite differences approach. For each finite segment, a quasi-static torque-deflection equilibrium equation is calculated using beam theory. By using the deflection displacements and torsion angles, the kinematic modeling of the catheter system is derived. The proposed models are evaluated by comparing the simulation results of the proposed model with the experimental results of a proof-of-concept prototype. PMID:25328804

6. Automated photogrammetry for three-dimensional models of urban spaces

Leberl, Franz; Meixner, Philipp; Wendel, Andreas; Irschara, Arnold

2012-02-01

The location-aware Internet is inspiring intensive work addressing the automated assembly of three-dimensional models of urban spaces with their buildings, circulation spaces, vegetation, signs, even their above-ground and underground utility lines. Two-dimensional geographic information systems (GISs) and municipal utility information exist and can serve to guide the creation of models being built with aerial, sometimes satellite imagery, streetside images, indoor imaging, and alternatively with light detection and ranging systems (LiDARs) carried on airplanes, cars, or mounted on tripods. We review the results of current research to automate the information extraction from sensor data. We show that aerial photography at ground sampling distances (GSD) of 1 to 10 cm is well suited to provide geometry data about building facades and roofs, that streetside imagery at 0.5 to 2 cm is particularly interesting when it is collected within community photo collections (CPCs) by the general public, and that the transition to digital imaging has opened the no-cost option of highly overlapping images in support of a more complete and thus more economical automation. LiDAR-systems are a widely used source of three-dimensional data, but they deliver information not really superior to digital photography.

7. Error Estimation for Reduced Order Models of Dynamical Systems

SciTech Connect

Homescu, C; Petzold, L; Serban, R

2004-01-22

The use of reduced order models to describe a dynamical system is pervasive in science and engineering. Often these models are used without an estimate of their error or range of validity. In this paper we consider dynamical systems and reduced models built using proper orthogonal decomposition. We show how to compute estimates and bounds for these errors, by a combination of small sample statistical condition estimation and error estimation using the adjoint method. Most importantly, the proposed approach allows the assessment of regions of validity for reduced models, i.e., ranges of perturbations in the original system over which the reduced model is still appropriate. Numerical examples validate our approach: the error norm estimates approximate well the forward error while the derived bounds are within an order of magnitude.

8. Three-dimensional face model reproduction method using multiview images

Nagashima, Yoshio; Agawa, Hiroshi; Kishino, Fumio

1991-11-01

This paper describes a method of reproducing three-dimensional face models using multi-view images for a virtual space teleconferencing system that achieves a realistic visual presence for teleconferencing. The goal of this research, as an integral component of a virtual space teleconferencing system, is to generate a three-dimensional face model from facial images, synthesize images of the model virtually viewed from different angles, and with natural shadow to suit the lighting conditions of the virtual space. The proposed method is as follows: first, front and side view images of the human face are taken by TV cameras. The 3D data of facial feature points are obtained from front- and side-views by an image processing technique based on the color, shape, and correlation of face components. Using these 3D data, the prepared base face models, representing typical Japanese male and female faces, are modified to approximate the input facial image. The personal face model, representing the individual character, is then reproduced. Next, an oblique view image is taken by TV camera. The feature points of the oblique view image are extracted using the same image processing technique. A more precise personal model is reproduced by fitting the boundary of the personal face model to the boundary of the oblique view image. The modified boundary of the personal face model is determined by using face direction, namely rotation angle, which is detected based on the extracted feature points. After the 3D model is established, the new images are synthesized by mapping facial texture onto the model.

9. Reduced order modelling of an unstructured mesh air pollution model and application in 2D/3D urban street canyons

Fang, F.; Zhang, T.; Pavlidis, D.; Pain, C. C.; Buchan, A. G.; Navon, I. M.

2014-10-01

A novel reduced order model (ROM) based on proper orthogonal decomposition (POD) has been developed for a finite-element (FE) adaptive mesh air pollution model. A quadratic expansion of the non-linear terms is employed to ensure the method remained efficient. This is the first time such an approach has been applied to air pollution LES turbulent simulation through three dimensional landscapes. The novelty of this work also includes POD's application within a FE-LES turbulence model that uses adaptive resolution. The accuracy of the reduced order model is assessed and validated for a range of 2D and 3D urban street canyon flow problems. By comparing the POD solutions against the fine detail solutions obtained from the full FE model it is shown that the accuracy is maintained, where fine details of the air flows are captured, whilst the computational requirements are reduced. In the examples presented below the size of the reduced order models is reduced by factors up to 2400 in comparison to the full FE model while the CPU time is reduced by up to 98% of that required by the full model.

10. Exact solution of the one-dimensional J sup 2 model of superconducting networks in a magnetic field

SciTech Connect

Griffiths, R.B. Service de Physique Theorique, Centre d'Etudes Nucleaires de Saclay, 91191 Gif-sur-Yvette ); Floria, L.M. )

1992-05-01

A simplified one-dimensional model of certain nonperiodic networks of superconducting wires in a magnetic field, introduced by Grest, Chaikin, and Levine, is solved exactly by reducing it to a mathematical problem involving Fourier transforms of one-dimensional sequences. Explicit results are obtained for some particular cases including that of the Fibonacci sequence'' considered by them. Inflation symmetry appears to play no significant role; the crucial question is the existence and structure of a discrete spectrum in the Fourier transform.

11. Mandibular reconstruction using stereolithographic 3-dimensional printing modeling technology.

PubMed

2009-11-01

Mandibular reconstruction can be challenging for the surgeon wishing to restore its unique geometry. Reconstruction can be achieved with titanium bone plates followed by autogenous bone grafting. Incorporation of the bone graft into the mandible provides continuity and strength required for proper esthetics and function and permitting dental implant rehabilitation at a later stage. Precious time in the operating room is invested in plate contouring to reconstruct the mandible. Rapid prototyping technologies can construct physical models from computer-aided design via 3-dimensional (3D) printers. A prefabricated 3D model is achieved, which assists in accurate contouring of plates and/or planning of bone graft harvest geometry before surgery. The 2 most commonly used rapid prototyping technologies are stereolithography and 3D printing (3DP). Three-dimensional printing is advantageous to stereolithography for better accuracy, quicker printing time, and lower cost. We present 3 clinical cases based on 3DP modeling technology. Models were fabricated before the resection of mandibular ameloblastoma and were used to prepare bridging plates before the first stage of reconstruction. In 1 case, another model was fabricated and used as a template for iliac crest bone graft in the second stage of reconstruction. The 3DP technology provided a precise, fast, and cheap mandibular reconstruction, which aids in shortened operation time (and therefore decreased exposure time to general anesthesia, decreased blood loss, and shorter wound exposure time) and easier surgical procedure.

12. A reduced-dynamics variational approach for the assimilation of altimeter data into eddy-resolving ocean models

Yu, Peng; Morey, Steven L.; O'Brien, James J.

A new method of assimilating sea surface height (SSH) data into ocean models is introduced and tested. Many features observable by satellite altimetry are approximated by the first baroclinic mode over much of the ocean, especially in the lower (but non-equatorial) and mid latitude regions. Based on this dynamical trait, a reduced-dynamics adjoint technique is developed and implemented with a three-dimensional model using vertical normal mode decomposition. To reduce the complexity of the variational data assimilation problem, the adjoint equations are based on a one-active-layer reduced-gravity model, which approximates the first baroclinic mode, as opposed to the full three-dimensional model equations. The reduced dimensionality of the adjoint model leads to lower computational cost than a traditional variational data assimilation algorithm. The technique is applicable to regions of the ocean where the SSH variability is dominated by the first baroclinic mode. The adjustment of the first baroclinic mode model fields dynamically transfers the SSH information to the deep ocean layers. The technique is developed in a modular fashion that can be readily implemented with many three-dimensional ocean models. For this study, the method is tested with the Navy Coastal Ocean Model (NCOM) configured to simulate the Gulf of Mexico.

13. Coherent two-dimensional spectroscopy of a Fano model

Finkelstein-Shapiro, Daniel; Poulsen, Felipe; Pullerits, Tõnu; Hansen, Thorsten

2016-11-01

The Fano line shape arises from the interference of two excitation pathways to reach a continuum. Its generality has resulted in a tremendous success in explaining the line shapes of many one-dimensional spectroscopies—absorption, emission, scattering, conductance, photofragmentation—applied to very varied systems—atoms, molecules, semiconductors, and metals. Unraveling a spectroscopy into a second dimension reveals the relationship between states in addition to decongesting the spectra. Femtosecond-resolved two-dimensional electronic spectroscopy (2DES) is a four-wave mixing technique that measures the time evolution of the populations and coherences of excited states. It has been applied extensively to the dynamics of photosynthetic units, and more recently to materials with extended band structures. In this paper, we solve the full time-dependent third-order response, measured in 2DES, of a Fano model and give the system parameters that become accessible.

14. Goldilocks models of higher-dimensional inflation (including modulus stabilization)

Burgess, C. P.; Enns, Jared J. H.; Hayman, Peter; Patil, Subodh P.

2016-08-01

We explore the mechanics of inflation within simplified extra-dimensional models involving an inflaton interacting with the Einstein-Maxwell system in two extra dimensions. The models are Goldilocks-like inasmuch as they are just complicated enough to include a mechanism to stabilize the extra-dimensional size (or modulus), yet simple enough to solve explicitly the full extra-dimensional field equations using only simple tools. The solutions are not restricted to the effective 4D regime with H ll mKK (the latter referring to the characteristic mass splitting of the Kaluza-Klein excitations) because the full extra-dimensional Einstein equations are solved. This allows an exploration of inflationary physics in a controlled calculational regime away from the usual four-dimensional lamp-post. The inclusion of modulus stabilization is important because experience with string models teaches that this is usually what makes models fail: stabilization energies easily dominate the shallow potentials required by slow roll and so open up directions to evolve that are steeper than those of the putative inflationary direction. We explore (numerically and analytically) three representative kinds of inflationary scenarios within this simple setup. In one the radion is trapped in an inflaton-dependent local minimum whose non-zero energy drives inflation. Inflation ends as this energy relaxes to zero when the inflaton finds its own minimum. The other two involve power-law scaling solutions during inflation. One of these is a dynamical attractor whose features are relatively insensitive to initial conditions but whose slow-roll parameters cannot be arbitrarily small; the other is not an attractor but can roll much more slowly, until eventually transitioning to the attractor. The scaling solutions can satisfy H > mKK, but when they do standard 4D fluctuation calculations need not apply. When in a 4D regime the solutions predict η simeq 0 and so r simeq 0.11 when ns simeq 0.96 and so

15. Numerical study on a canonized Hamiltonian system representing reduced magnetohydrodynamics and its comparison with two-dimensional Euler system

SciTech Connect

Kaneko, Yuta; Yoshida, Zensho

2014-03-15

Introducing a Clebsch-like parameterization, we have formulated a canonical Hamiltonian system on a symplectic leaf of reduced magnetohydrodynamics. An interesting structure of the equations is in that the Lorentz-force, which is a quadratic nonlinear term in the conventional formulation, appears as a linear term −ΔQ, just representing the current density (Q is a Clebsch variable, and Δ is the two-dimensional Laplacian); omitting this term reduces the system into the two-dimensional Euler vorticity equation of a neutral fluid. A heuristic estimate shows that current sheets grow exponentially (even in a fully nonlinear regime) together with the action variable P that is conjugate to Q. By numerical simulation, the predicted behavior of the canonical variables, yielding exponential growth of current sheets, has been demonstrated.

16. Finite Element Model to Reduce Fire and Blast Vulnerability

DTIC Science & Technology

2013-01-01

Finite Element Analysis FEM Finite Element Model NAVAIR...and probabilistic analysis are need to address these challenges. The objective of this effort is to develop a finite element model of a soldier to...UNCLASSIFIED FINITE ELEMENT MODEL TO REDUCE FIRE AND BLAST VULNERABILITY INTERIM REPORT TFLRF No. 439 by W. Loren Francis

17. Error Estimation for Reduced Order Models of Dynamical systems

SciTech Connect

Homescu, C; Petzold, L R; Serban, R

2003-12-16

The use of reduced order models to describe a dynamical system is pervasive in science and engineering. Often these models are used without an estimate of their error or range of validity. In this paper we consider dynamical systems and reduced models built using proper orthogonal decomposition. We show how to compute estimates and bounds for these errors, by a combination of the small sample statistical condition estimation method and of error estimation using the adjoint method. More importantly, the proposed approach allows the assessment of so-called regions of validity for reduced models, i.e., ranges of perturbations in the original system over which the reduced model is still appropriate. This question is particularly important for applications in which reduced models are used not just to approximate the solution to the system that provided the data used in constructing the reduced model, but rather to approximate the solution of systems perturbed from the original one. Numerical examples validate our approach: the error norm estimates approximate well the forward error while the derived bounds are within an order of magnitude.

18. Development of an interactive anatomical three-dimensional eye model.

PubMed

Allen, Lauren K; Bhattacharyya, Siddhartha; Wilson, Timothy D

2015-01-01

The discrete anatomy of the eye's intricate oculomotor system is conceptually difficult for novice students to grasp. This is problematic given that this group of muscles represents one of the most common sites of clinical intervention in the treatment of ocular motility disorders and other eye disorders. This project was designed to develop a digital, interactive, three-dimensional (3D) model of the muscles and cranial nerves of the oculomotor system. Development of the 3D model utilized data from the Visible Human Project (VHP) dataset that was refined using multiple forms of 3D software. The model was then paired with a virtual user interface in order to create a novel 3D learning tool for the human oculomotor system. Development of the virtual eye model was done while attempting to adhere to the principles of cognitive load theory (CLT) and the reduction of extraneous load in particular. The detailed approach, digital tools employed, and the CLT guidelines are described herein.

19. A three dimensional heart model based on anatomically aligned trusses.

PubMed

Witman, S; Gefen, A; Barnea, O

2007-01-01

A new approach for modeling and simulating the contraction of the heart is presented. The model is based on anatomical images and accounts for cardiac muscle fibers and their orientation. The heart is modeled as a structure built of trusses, each representing a group of myofibers with calculated deformations using matrix structural analysis. Three elements are represented; these are the contractile cardiac muscle, the elastic passive collagen, and intracardiac blood interacting with the heart's preload and afterload. Incompressibility of each element is preserved. The conduction system is simulated in the model by transferring the activating signal from one element to another or by Purkinje fibers activation. The method was demonstrated using a three-dimensional one-layer geometrical ventricle with orthogonal fibers and with anatomically oriented fibers.

20. Recursive three-dimensional model reconstruction based on Kalman filtering.

PubMed

Yu, Ying Kin; Wong, Kin Hong; Chang, Michael Ming Yuen

2005-06-01

A recursive two-step method to recover structure and motion from image sequences based on Kalman filtering is described in this paper. The algorithm consists of two major steps. The first step is an extended Kalman filter (EKF) for the estimation of the object's pose. The second step is a set of EKFs, one for each model point, for the refinement of the positions of the model features in the three-dimensional (3-D) space. These two steps alternate from frame to frame. The initial model converges to the final structure as the image sequence is scanned sequentially. The performance of the algorithm is demonstrated with both synthetic data and real-world objects. Analytical and empirical comparisons are made among our approach, the interleaved bundle adjustment method, and the Kalman filtering-based recursive algorithm by Azarbayejani and Pentland. Our approach outperformed the other two algorithms in terms of computation speed without loss in the quality of model reconstruction.

1. Up and down cascades: three-dimensional magnetic field model.

PubMed

Blanter, E M; Shnirman, M G; Le Mouël, J L

2002-06-01

In our previous works we already have proposed a two-dimensional model of geodynamo. Now we use the same approach to build a three-dimensional self-excited geodynamo model that generates a large scale magnetic field from whatever small initial field, using the up and down cascade effects of a multiscale turbulent system of cyclones. The multiscale system of turbulent cyclones evolves in six domains of an equatorial cylindrical layer of the core. The appearance of new cyclones is realized by two cascades: a turbulent direct cascade and an inverse cascade of coupling of similar cyclones. The interaction between the different domains is effected through a direct cascade parameter which is essential for the statistics of the long-life symmetry breaking. Generation of the secondary magnetic field results from the interaction of the components of the primary magnetic field with the turbulent cyclones. The amplification of the magnetic field is due to the transfer of energy from the turbulent helical motion to the generated magnetic field. The model demonstrates a phase transition through the parameter characterizing this energy transfer. In the supercritical domain we obtain long-term intervals of constant polarity (chrons) and quick reversals; relevant time constants agree with paleomagnetic observations. Possible application of the model to the study of the geometrical structure of the geomagnetic field (and briefly other planetary fields) is discussed.

2. Assessing Predicted Contacts for Building Protein Three-Dimensional Models.

PubMed

2017-01-01

Recent successes of contact-guided protein structure prediction methods have revived interest in solving the long-standing problem of ab initio protein structure prediction. With homology modeling failing for many protein sequences that do not have templates, contact-guided structure prediction has shown promise, and consequently, contact prediction has gained a lot of interest recently. Although a few dozen contact prediction tools are already currently available as web servers and downloadables, not enough research has been done towards using existing measures like precision and recall to evaluate these contacts with the goal of building three-dimensional models. Moreover, when we do not have a native structure for a set of predicted contacts, the only analysis we can perform is a simple contact map visualization of the predicted contacts. A wider and more rigorous assessment of the predicted contacts is needed, in order to build tertiary structure models. This chapter discusses instructions and protocols for using tools and applying techniques in order to assess predicted contacts for building three-dimensional models.

3. Spatial modes in one-dimensional models for capillary jets

Guerrero, J.; González, H.; García, F. J.

2016-03-01

One-dimensional (1D) models are widely employed to simplify the analysis of axisymmetric capillary jets. These models postulate that, for slender deformations of the free surface, the radial profile of the axial velocity can be approximated as uniform (viscous slice, averaged, and Cosserat models) or parabolic (parabolic model). In classical works on spatial stability analysis with 1D models, considerable misinterpretation was generated about the modes yielded by each model. The already existing physical analysis of three-dimensional (3D) axisymmetric spatial modes enables us to relate these 1D spatial modes to the exact 3D counterparts. To do so, we address the surface stimulation problem, which can be treated as linear, by considering the effect of normal and tangential stresses to perturb the jet. A Green's function for a spatially local stimulation having a harmonic time dependence provides the general formalism to describe any time-periodic stimulation. The Green's function of this signaling problem is known to be a superposition of the spatial modes, but in fact these modes are of fundamental nature, i.e., not restricted to the surface stimulation problem. The smallness of the wave number associated with each mode is the criterion to validate or invalidate the 1D approaches. The proposed axial-velocity profiles (planar or parabolic) also have a remarkable influence on the outcomes of each 1D model. We also compare with the classical 3D results for (i) conditions for absolute instability, and (ii) the amplitude of the unstable mode resulting from both normal and tangential surface stress stimulation. Incidentally, as a previous task, we need to re-deduce 1D models in order to include eventual stresses of various possible origins (electrohydrodynamic, thermocapillary, etc.) applied on the free surface, which were not considered in the previous general formulations.

4. REDUCING THE DIMENSIONALITY OF DATA: LOCALLY LINEAR EMBEDDING OF SLOAN GALAXY SPECTRA

SciTech Connect

Vanderplas, Jake; Connolly, Andrew

2009-11-15

We introduce locally linear embedding (LLE) to the astronomical community as a new classification technique, using Sloan Digital Sky Survey spectra as an example data set. LLE is a nonlinear dimensionality reduction technique that has been studied in the context of computer perception. We compare the performance of LLE to well-known spectral classification techniques, e.g., principal component analysis and line-ratio diagnostics. We find that LLE combines the strengths of both methods in a single, coherent technique, and leads to improved classification of emission-line spectra at a relatively small computational cost. We also present a data subsampling technique that preserves local information content, and proves effective for creating small, efficient training samples from large, high-dimensional data sets. Software used in this LLE-based classification is made available.

5. Reducing Fear of the Laboratory Rat: A Participant Modeling Approach.

ERIC Educational Resources Information Center

Barber, Nigel

1994-01-01

Reports on the use of participant modeling in a study of 56 college-level students to reduce fear of laboratory rats. Discovers that even mild exposure reduced fear significantly. Finds that women were more fearful initially but that their fear reduction was equal to that of men. (CFR)

6. Adaptive tracking for complex systems using reduced-order models

NASA Technical Reports Server (NTRS)

Carnigan, Craig R.

1990-01-01

Reduced-order models are considered in the context of parameter adaptive controllers for tracking workspace trajectories. A dual-arm manipulation task is used to illustrate the methodology and provide simulation results. A parameter adaptive controller is designed to track a payload trajectory using a four-parameter model instead of the full-order, nine-parameter model. Several simulations with different payload-to-arm mass ratios are used to illustrate the capabilities of the reduced-order model in tracking the desired trajectory.

7. Adaptive tracking for complex systems using reduced-order models

NASA Technical Reports Server (NTRS)

Carignan, Craig R.

1990-01-01

Reduced-order models are considered in the context of parameter adaptive controllers for tracking workspace trajectories. A dual-arm manipulation task is used to illustrate the methodology and provide simulation results. A parameter adaptive controller is designed to track the desired position trajectory of a payload using a four-parameter model instead of a full-order, nine-parameter model. Several simulations with different payload-to-arm mass ratios are used to illustrate the capabilities of the reduced-order model in tracking the desired trajectory.

8. Stochastic Modeling of Multi-Dimensional Precipitation Fields.

Yoo, Chulsang

1995-01-01

A new multi-dimensional stochastic precipitation model is proposed with major emphasis on its spectral structure. As a hyperbolic type of stochastic partial differential equation, this model is characterized by having a small set of parameters, which could be easily estimated. These characteristics are similar to those of the noise forced diffusive precipitation model, but representation of the physics and statistical features of the precipitation field is better as in the WGR precipitation model. The model derivation was based on the AR (Auto Regressive) process considering advection and diffusion, the dominant statistical and physical characteristics of the precipitation field propagation. The model spectrum showed a good match for the GATE spectrum developed by Nakamoto et al. (1990). This model was also compared with the WGR model and the noise forced diffusive precipitation model analytically and through applications such as the sampling error estimation from space-borne sensors and raingages, and the ground-truth problem. The sampling error from space-borne sensors based on the proposed model was similar to that of the noise forced diffusive precipitation model but much smaller than that of the WGR model. Similar result was also obtained in the estimation of the sampling error from raingages. The dimensionless root mean square error of the proposed model in the ground-truth problem was in between those of the WGR model and the noise forced diffusive precipitation model, even though the difference was very small. Simulation study of the realistic precipitation field showed the effect of the variance of the noise forcing term on the life time of a storm event.

9. A comparison of two- and three-dimensional stochastic models of regional solute movement

USGS Publications Warehouse

Shapiro, A.M.; Cvetkovic, V.D.

1990-01-01

Recent models of solute movement in porous media that are based on a stochastic description of the porous medium properties have been dedicated primarily to a three-dimensional interpretation of solute movement. In many practical problems, however, it is more convenient and consistent with measuring techniques to consider flow and solute transport as an areal, two-dimensional phenomenon. The physics of solute movement, however, is dependent on the three-dimensional heterogeneity in the formation. A comparison of two- and three-dimensional stochastic interpretations of solute movement in a porous medium having a statistically isotropic hydraulic conductivity field is investigated. To provide an equitable comparison between the two- and three-dimensional analyses, the stochastic properties of the transmissivity are defined in terms of the stochastic properties of the hydraulic conductivity. The variance of the transmissivity is shown to be significantly reduced in comparison to that of the hydraulic conductivity, and the transmissivity is spatially correlated over larger distances. These factors influence the two-dimensional interpretations of solute movement by underestimating the longitudinal and transverse growth of the solute plume in comparison to its description as a three-dimensional phenomenon. Although this analysis is based on small perturbation approximations and the special case of a statistically isotropic hydraulic conductivity field, it casts doubt on the use of a stochastic interpretation of the transmissivity in describing regional scale movement. However, by assuming the transmissivity to be the vertical integration of the hydraulic conductivity field at a given position, the stochastic properties of the hydraulic conductivity can be estimated from the stochastic properties of the transmissivity and applied to obtain a more accurate interpretation of solute movement. ?? 1990 Kluwer Academic Publishers.

10. Generation of animation sequences of three dimensional models

NASA Technical Reports Server (NTRS)

Poi, Sharon (Inventor); Bell, Brad N. (Inventor)

1990-01-01

The invention is directed toward a method and apparatus for generating an animated sequence through the movement of three-dimensional graphical models. A plurality of pre-defined graphical models are stored and manipulated in response to interactive commands or by means of a pre-defined command file. The models may be combined as part of a hierarchical structure to represent physical systems without need to create a separate model which represents the combined system. System motion is simulated through the introduction of translation, rotation and scaling parameters upon a model within the system. The motion is then transmitted down through the system hierarchy of models in accordance with hierarchical definitions and joint movement limitations. The present invention also calls for a method of editing hierarchical structure in response to interactive commands or a command file such that a model may be included, deleted, copied or moved within multiple system model hierarchies. The present invention also calls for the definition of multiple viewpoints or cameras which may exist as part of a system hierarchy or as an independent camera. The simulated movement of the models and systems is graphically displayed on a monitor and a frame is recorded by means of a video controller. Multiple movement and hierarchy manipulations are then recorded as a sequence of frames which may be played back as an animation sequence on a video cassette recorder.

11. Digital Moon: A three-dimensional framework for lunar modeling

Paige, D. A.; Elphic, R. C.; Foote, E. J.; Meeker, S. R.; Siegler, M. A.; Vasavada, A. R.

2009-12-01

The Moon has a complex three-dimensional shape with significant large-scale and small-scale topographic relief. The Moon’s topography largely controls the distribution of incident solar radiation, as well as the scattered solar and infrared radiation fields. Topography also affects the Moon’s interaction with the space environment, its magnetic field, and the propagation of seismic waves. As more extensive and detailed lunar datasets become available, there is an increasing need to interpret and compare them with the results of physical models in a fully three-dimensional context. We have developed a three-dimensional framework for lunar modeling we call the Digital Moon. The goal of this work is to enable high fidelity physical modeling and visualization of the Moon in a parallel computing environment. The surface of the Moon is described by a continuous triangular mesh of arbitrary shape and spatial scale. For regions of limited geographic extent, it is convenient to employ meshes on a rectilinear grid. However for global-scale modeling, we employ a continuous geodesic gridding scheme (Teanby, 2008). Each element in the mesh surface is allowed to have a unique set of physical properties. Photon and particle interactions between mesh elements are modeled using efficient ray tracing algorithms. Heat, mass, photon and particle transfer within each mesh element are modeled in one dimension. Each compute node is assigned a portion of the mesh and collective interactions between elements are handled through network interfaces. We have used the model to calculate lunar surface and subsurface temperatures that can be compared directly with radiometric temperatures measured by the Diviner Lunar Radiometer Experiment on the Lunar Reconnaissance Orbiter. The model includes realistic surface photometric functions based on goniometric measurements of lunar soil samples (Foote and Paige, 2009), and one-dimensional thermal models based on lunar remote sensing and Apollo

12. Three Dimensional Visualization of a Coastal Mesoscale Model

DTIC Science & Technology

1993-12-01

thankful to Karen, my wife, who managed to keep the faith as well as grow a beautiful daughter, Danielle Tayler Sampson -- our first. Danielle, I ...No I I TITLE (include secutray class•ncarronii Three Dimensional Visualization of a Coastal Mesoscale Model 12 PERSONAl. AUTHOR(S) Sampson, R. Mark 1...3a TYPE OF REPORT 13b TIME COVERED 114 DATE OF REPORT (year, monA daiv; I PAGE COUN.NT Master’s Thesis Fr To 93 December 70 16 SUPPLEMENTARY NOTATION

13. Two-dimensional magnetohydrodynamic turbulence - Cylindrical, non-dissipative model

NASA Technical Reports Server (NTRS)

Montgomery, D.; Vahala, G.

1979-01-01

Incompressible magnetohydrodynamic turbulence is treated in the presence of cylindrical boundaries which are perfectly conducting and rigidly smooth. The model treated is non-dissipative and two-dimensional, the variation of all quantities in the axial direction being ignored. Equilibrium Gibbs ensemble predictions are explored assuming the constraint of constant axial current (appropriate to tokamak operation). No small-amplitude approximations are made. The expectation value of the turbulent kinetic energy is found to approach zero for the state of maximum mean-square vector potential to energy ratio. These are the only states for which large velocity fluctuations are not expected.

14. Superconductivity in the two-dimensional generalized Hubbard model

Lima, L. S.

2016-08-01

We have used the Green's functions method at finite temperature and the Kubo's formalism, to calculate the electron conductivity σ(ω) in the generalized two-dimensional Hubbard model. We have obtained a behavior superconductor for the system to T > T0. The AC conductivity falls to zero in ω =ω0 , where ω0 depends on Δ, which is the gap of the system. The behavior gotten is according of with the behavior of the superconductors of high Tc where there is a changes abruptly from a Mott's insulator state to superconductor.

15. Modeling direct interband tunneling. II. Lower-dimensional structures

SciTech Connect

Pan, Andrew; Chui, Chi On

2014-08-07

We investigate the applicability of the two-band Hamiltonian and the widely used Kane analytical formula to interband tunneling along unconfined directions in nanostructures. Through comparisons with k·p and tight-binding calculations and quantum transport simulations, we find that the primary correction is the change in effective band gap. For both constant fields and realistic tunnel field-effect transistors, dimensionally consistent band gap scaling of the Kane formula allows analytical and numerical device simulations to approximate non-equilibrium Green's function current characteristics without arbitrary fitting. This allows efficient first-order calibration of semiclassical models for interband tunneling in nanodevices.

16. High dimensional model representation (HDMR) with clustering for image retrieval

Karcılı, Ayşegül; Tunga, Burcu

2017-01-01

Image retrieval continues to hold an important place in today's extremely fast growing technology. In this field, the accurate image retrieval with high speed is critical. In this study, to achieve this important issue we developed a novel method with the help of High Dimensional Model Representation (HDMR) philosophy. HDMR is a decomposition method used to solve different scientific problems. To test the performance of the new method we used Columbia Object Image Library (COIL100) and obtained the encouraging results. These results are given in the findings section.

17. Projection-Based Reduced Order Modeling for Spacecraft Thermal Analysis

NASA Technical Reports Server (NTRS)

Qian, Jing; Wang, Yi; Song, Hongjun; Pant, Kapil; Peabody, Hume; Ku, Jentung; Butler, Charles D.

2015-01-01

This paper presents a mathematically rigorous, subspace projection-based reduced order modeling (ROM) methodology and an integrated framework to automatically generate reduced order models for spacecraft thermal analysis. Two key steps in the reduced order modeling procedure are described: (1) the acquisition of a full-scale spacecraft model in the ordinary differential equation (ODE) and differential algebraic equation (DAE) form to resolve its dynamic thermal behavior; and (2) the ROM to markedly reduce the dimension of the full-scale model. Specifically, proper orthogonal decomposition (POD) in conjunction with discrete empirical interpolation method (DEIM) and trajectory piece-wise linear (TPWL) methods are developed to address the strong nonlinear thermal effects due to coupled conductive and radiative heat transfer in the spacecraft environment. Case studies using NASA-relevant satellite models are undertaken to verify the capability and to assess the computational performance of the ROM technique in terms of speed-up and error relative to the full-scale model. ROM exhibits excellent agreement in spatiotemporal thermal profiles (<0.5% relative error in pertinent time scales) along with salient computational acceleration (up to two orders of magnitude speed-up) over the full-scale analysis. These findings establish the feasibility of ROM to perform rational and computationally affordable thermal analysis, develop reliable thermal control strategies for spacecraft, and greatly reduce the development cycle times and costs.

18. Two-dimensional modeling of magnetically imploded liners

SciTech Connect

Atchison, W.L.; Bowers, R.L.; Brownell, J.H.; Lee, H.

1996-11-01

Magnetically imploded massive cylindrical liner drivers have been studied in two-dimensions for low, intermediate and high energy pulsed power systems. The simulations have been carried out using a resistive Eulerian magnetohydrodynamics computational model which includes material strength, and models the interactions between the imploding liner and the electrode walls. The computations simulate the generation of perturbations and their subsequent growth during the implosion. At low energies a solid liner remains in the plastic regime, reaching an inner cylindrical target with velocities of a few mm per {mu}s. At higher energies (where one-dimensional models predict implosion velocities of order 1 cm/{mu}s or more) resistive heating of the liner results in melting, and the effects of magnetically driven instabilities become important. We discuss the two-dimensional issues which arise in these systems. These include: the onset of perturbations associated with the motion of the liner along the electrodes; the growth of instabilities in liquid layers; and the suppression of instability growth during the implosion by maintaining a solid inner layer. Studies have been made of liners designed for the Pegasus capacitor bank facility (currents in the 5 - 12 MA regime), and for the Procyon high explosive system (currents in the 20 MA regime). This work focus on the design and performance of the first Pegasus composite megabar liner experiment.

19. Modeling of Unsteady Three-dimensional Flows in Multistage Machines

NASA Technical Reports Server (NTRS)

Hall, Kenneth C.; Pratt, Edmund T., Jr.; Kurkov, Anatole (Technical Monitor)

2003-01-01

20. Proton environment of reduced Rieske iron-sulfur cluster probed by two-dimensional ESEEM spectroscopy.

PubMed

Kolling, Derrick R J; Samoilova, Rimma I; Shubin, Alexander A; Crofts, Antony R; Dikanov, Sergei A

2009-01-29

The proton environment of the reduced [2Fe-2S] cluster in the water-soluble head domain of the Rieske iron-sulfur protein (ISF) from the cytochrome bc(1) complex of Rhodobacter sphaeroides has been studied by orientation-selected X-band 2D ESEEM. The 2D spectra show multiple cross-peaks from protons, with considerable overlap. Samples in which (1)H(2)O water was replaced by (2)H(2)O were used to determine which of the observed peaks belong to exchangeable protons, likely involved in hydrogen bonds in the neighborhood of the cluster. By correlating the cross-peaks from 2D spectra recorded at different parts of the EPR spectrum, lines from nine distinct proton signals were identified. Assignment of the proton signals was based on a point-dipole model for interaction with electrons of Fe(III) and Fe(II) ions, using the high-resolution structure of ISF from Rb. sphaeroides. Analysis of experimental and calculated tensors has led us to conclude that even 2D spectra do not completely resolve all contributions from nearby protons. Particularly, the seven resolved signals from nonexchangeable protons could be produced by at least 13 protons. The contributions from exchangeable protons were resolved by difference spectra ((1)H(2)O minus (2)H(2)O), and assigned to two groups of protons with distinct anisotropic hyperfine values. The largest measured coupling exceeded any calculated value. This discrepancy could result from limitations of the point dipole approximation in dealing with the distribution of spin density over the sulfur atoms of the cluster and the cysteine ligands, or from differences between the structure in solution and the crystallographic structure. The approach demonstrated here provides a paradigm for a wide range of studies in which hydrogen-bonding interactions with metallic centers has a crucial role in understanding the function.

1. Medical image denoising using one-dimensional singularity function model.

PubMed

Luo, Jianhua; Zhu, Yuemin; Hiba, Bassem

2010-03-01

A novel denoising approach is proposed that is based on a spectral data substitution mechanism through using a mathematical model of one-dimensional singularity function analysis (1-D SFA). The method consists in dividing the complete spectral domain of the noisy signal into two subsets: the preserved set where the spectral data are kept unchanged, and the substitution set where the original spectral data having lower signal-to-noise ratio (SNR) are replaced by those reconstructed using the 1-D SFA model. The preserved set containing original spectral data is determined according to the SNR of the spectrum. The singular points and singularity degrees in the 1-D SFA model are obtained through calculating finite difference of the noisy signal. The theoretical formulation and experimental results demonstrated that the proposed method allows more efficient denoising while introducing less distortion, and presents significant improvement over conventional denoising methods.

2. Modeling for Process Control: High-Dimensional Systems

SciTech Connect

Lev S. Tsimring

2008-09-15

Most of other technologically important systems (among them, powders and other granular systems) are intrinsically nonlinear. This project is focused on building the dynamical models for granular systems as a prototype for nonlinear high-dimensional systems exhibiting complex non-equilibrium phenomena. Granular materials present a unique opportunity to study these issues in a technologically important and yet fundamentally interesting setting. Granular systems exhibit a rich variety of regimes from gas-like to solid-like depending on the external excitation. Based the combination of the rigorous asymptotic analysis, available experimental data and nonlinear signal processing tools, we developed a multi-scale approach to the modeling of granular systems from detailed description of grain-grain interaction on a micro-scale to continuous modeling of large-scale granular flows with important geophysical applications.

3. Three-dimensional temporomandibular joint modeling and animation.

PubMed

Cascone, Piero; Rinaldi, Fabrizio; Pagnoni, Mario; Marianetti, Tito Matteo; Tedaldi, Massimiliano

2008-11-01

The three-dimensional (3D) temporomandibular joint (TMJ) model derives from a study of the cranium by 3D virtual reality and mandibular function animation. The starting point of the project is high-fidelity digital acquisition of a human dry skull. The cooperation between the maxillofacial surgeon and the cartoonist enables the reconstruction of the fibroconnective components of the TMJ that are the keystone for comprehension of the anatomic and functional features of the mandible. The skeletal model is customized with the apposition of the temporomandibular ligament, the articular disk, the retrodiskal tissue, and the medial and the lateral ligament of the disk. The simulation of TMJ movement is the result of the integration of up-to-date data on the biomechanical restrictions. The 3D TMJ model is an easy-to-use application that may be run on a personal computer for the study of the TMJ and its biomechanics.

4. Finite volume model for two-dimensional shallow environmental flow

USGS Publications Warehouse

Simoes, F.J.M.

2011-01-01

This paper presents the development of a two-dimensional, depth integrated, unsteady, free-surface model based on the shallow water equations. The development was motivated by the desire of balancing computational efficiency and accuracy by selective and conjunctive use of different numerical techniques. The base framework of the discrete model uses Godunov methods on unstructured triangular grids, but the solution technique emphasizes the use of a high-resolution Riemann solver where needed, switching to a simpler and computationally more efficient upwind finite volume technique in the smooth regions of the flow. Explicit time marching is accomplished with strong stability preserving Runge-Kutta methods, with additional acceleration techniques for steady-state computations. A simplified mass-preserving algorithm is used to deal with wet/dry fronts. Application of the model is made to several benchmark cases that show the interplay of the diverse solution techniques.

5. Users manual for a one-dimensional Lagrangian transport model

USGS Publications Warehouse

Schoellhamer, D.H.; Jobson, H.E.

1986-01-01

A Users Manual for the Lagrangian Transport Model (LTM) is presented. The LTM uses Lagrangian calculations that are based on a reference frame moving with the river flow. The Lagrangian reference frame eliminates the need to numerically solve the convective term of the convection-diffusion equation and provides significant numerical advantages over the more commonly used Eulerian reference frame. When properly applied, the LTM can simulate riverine transport and decay processes within the accuracy required by most water quality studies. The LTM is applicable to steady or unsteady one-dimensional unidirectional flows in fixed channels with tributary and lateral inflows. Application of the LTM is relatively simple and optional capabilities improve the model 's convenience. Appendices give file formats and three example LTM applications that include the incorporation of the QUAL II water quality model 's reaction kinetics into the LTM. (Author 's abstract)

6. Three-dimensional vertex model for simulating multicellular morphogenesis

PubMed Central

Okuda, Satoru; Inoue, Yasuhiro; Adachi, Taiji

2015-01-01

During morphogenesis, various cellular activities are spatiotemporally coordinated on the protein regulatory background to construct the complicated, three-dimensional (3D) structures of organs. Computational simulations using 3D vertex models have been the focus of efforts to approach the mechanisms underlying 3D multicellular constructions, such as dynamics of the 3D monolayer or multilayer cell sheet like epithelia as well as the 3D compacted cell aggregate, including dynamic changes in layer structures. 3D vertex models enable the quantitative simulation of multicellular morphogenesis on the basis of single-cell mechanics, with complete control of various cellular activities such as cell contraction, growth, rearrangement, division, and death. This review describes the general use of the 3D vertex model, along with its applications to several simplified problems of developmental phenomena. PMID:27493850

7. The DSM-5 dimensional trait model and five-factor models of general personality.

PubMed

Gore, Whitney L; Widiger, Thomas A

2013-08-01

The current study tests empirically the relationship of the dimensional trait model proposed for the fifth edition of the Diagnostic and Statistical Manual of Mental Disorders (DSM-5) with five-factor models of general personality. The DSM-5 maladaptive trait dimensional model proposal included 25 traits organized within five broad domains (i.e., negative affectivity, detachment, antagonism, disinhibition, and psychoticism). Consistent with the authors of the proposal, it was predicted that negative affectivity would align with five-factor model (FFM) neuroticism, detachment with FFM introversion, antagonism with FFM antagonism, disinhibition with low FFM conscientiousness and, contrary to the proposal; psychoticism would align with FFM openness. Three measures of alternative five-factor models of general personality were administered to 445 undergraduates along with the Personality Inventory for DSM-5. The results provided support for the hypothesis that all five domains of the DSM-5 dimensional trait model are maladaptive variants of general personality structure, including the domain of psychoticism.

8. Lower-order effects adjustment in quantitative traits model-based multifactor dimensionality reduction.

PubMed

Mahachie John, Jestinah M; Cattaert, Tom; Lishout, François Van; Gusareva, Elena S; Steen, Kristel Van

2012-01-01

Identifying gene-gene interactions or gene-environment interactions in studies of human complex diseases remains a big challenge in genetic epidemiology. An additional challenge, often forgotten, is to account for important lower-order genetic effects. These may hamper the identification of genuine epistasis. If lower-order genetic effects contribute to the genetic variance of a trait, identified statistical interactions may simply be due to a signal boost of these effects. In this study, we restrict attention to quantitative traits and bi-allelic SNPs as genetic markers. Moreover, our interaction study focuses on 2-way SNP-SNP interactions. Via simulations, we assess the performance of different corrective measures for lower-order genetic effects in Model-Based Multifactor Dimensionality Reduction epistasis detection, using additive and co-dominant coding schemes. Performance is evaluated in terms of power and familywise error rate. Our simulations indicate that empirical power estimates are reduced with correction of lower-order effects, likewise familywise error rates. Easy-to-use automatic SNP selection procedures, SNP selection based on "top" findings, or SNP selection based on p-value criterion for interesting main effects result in reduced power but also almost zero false positive rates. Always accounting for main effects in the SNP-SNP pair under investigation during Model-Based Multifactor Dimensionality Reduction analysis adequately controls false positive epistasis findings. This is particularly true when adopting a co-dominant corrective coding scheme. In conclusion, automatic search procedures to identify lower-order effects to correct for during epistasis screening should be avoided. The same is true for procedures that adjust for lower-order effects prior to Model-Based Multifactor Dimensionality Reduction and involve using residuals as the new trait. We advocate using "on-the-fly" lower-order effects adjusting when screening for SNP-SNP interactions

9. Three-Dimensional Modeling of Air-Sea Interaction

Regis, J. L.; Slinn, D. N.

2004-12-01

Deep-water wave breaking is crucial in the transfer of heat, gases, and momentum between the ocean and the atmosphere. Observations of these events have provided qualitative support to this end, and yet accurate quantification of momentum transfer for strong winds and nonlinear waves has remained a challenge. In recent years, advances have been made in the development of numerous algorithms to capture and describe air-sea interaction. Most, however, are idealized and only capable of modeling fluid flow within the two-dimensional approximation. Thus, many important characteristics of the flow composition and breaking process are ignored, oversimplified, or remain unknown. We employ a three-dimensional, time-dependent, finite difference, volume of fluid model, including both the flow of air and water, entitled TRUCHAS, to address the issue of deep-water breaking waves. Our model utilizes the multidimensional piecewise linear interface calculation method to assess the volume fraction of each fluid material in every mesh cell. The model solves conservation equations for mass and momentum for multiple fluids within the domain and tracks the interfaces between them. A great many details of the flow development are available for analysis from the model output. These include wind and water velocities, pressure gradients in both the air and sea around a breaking wave, the development and evolution of wind-generated waves, and the corresponding transfer of momentum from the atmosphere to the ocean. Our results are correlated with laboratory experiments conducted at the University of Miami's Air-Sea Interaction Salt-water Tank that possesses both wind and wave generating capabilities. Preliminary model results show good qualitative agreement to laboratory data.

10. Controller design via structural reduced modeling by FETM

NASA Technical Reports Server (NTRS)

Yousuff, Ajmal

1987-01-01

The Finite Element-Transfer Matrix (FETM) method has been developed to reduce the computations involved in analysis of structures. This widely accepted method, however, has certain limitations, and does not address the issues of control design. To overcome these, a modification of the FETM method has been developed. The new method easily produces reduced models tailored toward subsequent control design. Other features of this method are its ability to: (1) extract open loop frequencies and mode shapes with less computations, (2) overcome limitations of the original FETM method, and (3) simplify the design procedures for output feedback, constrained compensation, and decentralized control. This report presents the development of the new method, generation of reduced models by this method, their properties, and the role of these reduced models in control design. Examples are included to illustrate the methodology.

11. Computational Model Builder for Multi-Dimensional Models

DTIC Science & Technology

2015-08-12

In addition tools to support both the Environmental Simulation Effort (ES) and the Engineered Resilient Systems (ERS). Various ParaView extensions...support ERDC’s Environmental Simulation (ES) effort as well as ERDC’s Engineered Resilient Systems (ERS) effort. Computational Model Builder Suite...Distribution Statement A: Approved for public release; distribution unlimited. UNCLASSIFIED Engineered Resilient Systems (ERS) Support

12. Model-based labeling, analysis, and three-dimensional visualization from two-dimensional medical images

Arata, Louis K.; Dhawan, Atam P.; Thomas, Stephen R.

1991-07-01

The computerized analysis and interpretation of three-dimensional medical images is of significant interest for diagnosis as well as for studying pathological processes. Knowledge-based image analysis and interpretation of radiological images can provide a tool for identifying and labeling each part of the image. The authors have developed a knowledge-based biomedical image analysis system for interpreting medical images using an anatomical knowledge base of the appropriate organs. In this paper, the structure of the biomedical image analysis system, along with results from the analysis of images of the human chest cavity, are presented. This approach utilizes an image analysis system with the capability of analyzing the data in both bottom-up (or data driven) and top-down (or model driven) modes to improve the recognition process. After an initial identification is achieved, segmented regions are aggregated and features for these aggregates are recomputed and matched to the model. This process continues until a 'best' match is found for the subject model region. Initial results are encouraging; however, much work remains to be done.

13. Reducing Redundancies in Reconfigurable Antenna Structures Using Graph Models

SciTech Connect

Costantine, Joseph; al-Saffar, Sinan; Christodoulou, Christos G.; Abdallah, Chaouki T.

2010-04-23

Many reconfigurable antennas have redundant components in their structures. In this paper we present an approach for reducing redundancies in reconfigurable antenna structures using graph models. We study reconfigurable antennas, which are grouped, categorized and modeled according to a set of proposed graph rules. Several examples are presented and discussed to demonstrate the validity of this new technique.

14. A Reduced Grid Method for a Parallel Global Ocean General Circulation Model

SciTech Connect

Wickett, Michael Everett

1999-12-01

A limitation of many explicit finite-difference global climate models is the timestep restriction caused by the decrease in cell size associated with the convergence of meridians near the poles. A computational grid in which the number of cells in the longitudinal direction is reduced toward high-latitudes, keeping the longitudinal width of the resulting cells as uniform as possible and increasing the allowable timestep, is applied to a three-dimensional primitive equation ocean-climate model. This ''reduced'' grid consists of subgrids which interact at interfaces along their northern and southern boundaries, where the resolution changes by a factor of three. Algorithms are developed to extend the finite difference techniques to this interface, focusing on the conservation required to perform long time integrations, while preserving the staggered spatial arrangement of variables and the numerics used on subgrids. The reduced grid eliminates the common alternative of filtering high-frequency modes from the solution at high-latitudes to allow a larger timestep and reduces execution time per model step by roughly 20 percent. The reduced grid model is implemented for parallel computer architectures with two-dimensional domain decomposition and message passing, with speedup results comparable to those of the original model. Both idealized and realistic model runs are presented to show the effect of the interface numerics on the model solution. First, a rectangular, mid-latitude, at-bottomed basin with vertical walls at the boundaries is driven only by surface wind stress to compare three resolutions of the standard grid to reduced grid cases which use various interface conditions. Next, a similar basin with wind stress, heat, and fresh water forcing is used to compare the results of a reduced grid with those of a standard grid result while exercising the full set of model equations. Finally, global model runs, with topography, forcing, and physical parameters similar to

15. A reduced-grid method for a parallel global ocean general circulation model

Wickett, Michael Everett

A limitation of many explicit finite-difference global climate models is the timestep restriction caused by the decrease in cell size associated with the convergence of meridians near the poles. A computational grid in which the number of cells in the longitudinal direction is reduced toward high- latitudes, keeping the longitudinal width of the resulting cells as uniform as possible and increasing the allowable timestep, is applied to a three- dimensional primitive equation ocean-climate model. This reduced'' grid consists of subgrids which interact at interfaces along their northern and southern boundaries, where the resolution changes by a factor of three. Algorithms are developed to extend the finite difference techniques to this interface, focusing on the conservation required to perform long time integrations, while preserving the staggered spatial arrangement of variables and the numerics used on subgrids. The reduced grid eliminates the common alternative of filtering high- frequency modes from the solution at high-latitudes to allow a larger timestep and reduces execution time per model step by roughly 20 percent. The reduced grid model is implemented for parallel computer architectures with two-dimensional domain decomposition and message passing, with speedup results comparable to those of the original model. Both idealized and realistic model runs are presented to show the effect of the interface numerics on the model solution. First, a rectangular, mid-latitude, flat-bottomed basin with vertical walls at the boundaries is driven only by surface wind stress to compare three resolutions of the standard grid to reduced grid cases which use various interface conditions. Next, a similar basin with wind stress, heat, and fresh water forcing is used to compare the results of a reduced grid with those of a standard grid result while exercising the full set of model equations. Finally, global model runs, with topography, forcing, and physical parameters

16. Reducing Outpatient Waiting Time: A Simulation Modeling Approach

PubMed Central

2013-01-01

Objectives The objective of this study was to provide a model for reducing outpatient waiting time by using simulation. Materials and Methods A simulation model was constructed by using the data of arrival time, service time and flow of 357 patients referred to orthopedic clinic of a general teaching hospital in Tehran. The simulation model was validated before constructing different scenarios. Results In this study 10 scenarios were presented for reducing outpatient waiting time. Patients waiting time was divided into three levels regarding their physicians. These waiting times for all scenarios were computed by simulation model. According to the final scores the 9th scenario was selected as the best way for reducing outpatient's waiting time. Conclusions Using the simulation as a decision making tool helps us to decide how we can reduce outpatient's waiting time. Comparison of outputs of this scenario and the based- case scenario in simulation model shows that combining physician's work time changing with patient's admission time changing (scenario 9) would reduce patient waiting time about 73.09%. Due to dynamic and complex nature of healthcare systems, the application of simulation for the planning, modeling and analysis of these systems has lagged behind traditional manufacturing practices. Rapid growth in health care system expenditures, technology and competition has increased the complexity of health care systems. Simulation is a useful tool for decision making in complex and probable systems. PMID:24616801

17. Transonic limit cycle oscillation analysis using reduced order aerodynamic models

Dowell, E. H.; Thomas, J. P.; Hall, K. C.

2004-01-01

Limit cycle oscillations have been observed in flight operations of modern aircraft, wind tunnel experiments and mathematical models. Both fluid and structural nonlinearities are thought to contribute to these phenomena. With recent advances in reduced order aerodynamic modeling, it is now feasible to analyze limit cycle oscillations that may occur in transonic flow including the effects of structural and fluid nonlinearities. In this paper an airfoil with control surface freeplay (a common structural nonlinearity) is used to investigate transonic flutter and limit cycle oscillations. The reduced order aerodynamic model used in this paper assumes the shock motion is small and in proportion to the structural motions.

18. Multi-Dimensional Calibration of Impact Dynamic Models

NASA Technical Reports Server (NTRS)

Horta, Lucas G.; Reaves, Mercedes C.; Annett, Martin S.; Jackson, Karen E.

2011-01-01

NASA Langley, under the Subsonic Rotary Wing Program, recently completed two helicopter tests in support of an in-house effort to study crashworthiness. As part of this effort, work is on-going to investigate model calibration approaches and calibration metrics for impact dynamics models. Model calibration of impact dynamics problems has traditionally assessed model adequacy by comparing time histories from analytical predictions to test at only a few critical locations. Although this approach provides for a direct measure of the model predictive capability, overall system behavior is only qualitatively assessed using full vehicle animations. In order to understand the spatial and temporal relationships of impact loads as they migrate throughout the structure, a more quantitative approach is needed. In this work impact shapes derived from simulated time history data are used to recommend sensor placement and to assess model adequacy using time based metrics and orthogonality multi-dimensional metrics. An approach for model calibration is presented that includes metric definitions, uncertainty bounds, parameter sensitivity, and numerical optimization to estimate parameters to reconcile test with analysis. The process is illustrated using simulated experiment data.

19. Mathematical modeling of the neuron morphology using two dimensional images.

PubMed

Rajković, Katarina; Marić, Dušica L; Milošević, Nebojša T; Jeremic, Sanja; Arsenijević, Valentina Arsić; Rajković, Nemanja

2016-02-07

In this study mathematical analyses such as the analysis of area and length, fractal analysis and modified Sholl analysis were applied on two dimensional (2D) images of neurons from adult human dentate nucleus (DN). Using mathematical analyses main morphological properties were obtained including the size of neuron and soma, the length of all dendrites, the density of dendritic arborization, the position of the maximum density and the irregularity of dendrites. Response surface methodology (RSM) was used for modeling the size of neurons and the length of all dendrites. However, the RSM model based on the second-order polynomial equation was only possible to apply to correlate changes in the size of the neuron with other properties of its morphology. Modeling data provided evidence that the size of DN neurons statistically depended on the size of the soma, the density of dendritic arborization and the irregularity of dendrites. The low value of mean relative percent deviation (MRPD) between the experimental data and the predicted neuron size obtained by RSM model showed that model was suitable for modeling the size of DN neurons. Therefore, RSM can be generally used for modeling neuron size from 2D images.

20. Principal Angle Enrichment Analysis (PAEA): Dimensionally Reduced Multivariate Gene Set Enrichment Analysis Tool.

PubMed

Clark, Neil R; Szymkiewicz, Maciej; Wang, Zichen; Monteiro, Caroline D; Jones, Matthew R; Ma'ayan, Avi

2015-11-01

Gene set analysis of differential expression, which identifies collectively differentially expressed gene sets, has become an important tool for biology. The power of this approach lies in its reduction of the dimensionality of the statistical problem and its incorporation of biological interpretation by construction. Many approaches to gene set analysis have been proposed, but benchmarking their performance in the setting of real biological data is difficult due to the lack of a gold standard. In a previously published work we proposed a geometrical approach to differential expression which performed highly in benchmarking tests and compared well to the most popular methods of differential gene expression. As reported, this approach has a natural extension to gene set analysis which we call Principal Angle Enrichment Analysis (PAEA). PAEA employs dimensionality reduction and a multivariate approach for gene set enrichment analysis. However, the performance of this method has not been assessed nor its implementation as a web-based tool. Here we describe new benchmarking protocols for gene set analysis methods and find that PAEA performs highly. The PAEA method is implemented as a user-friendly web-based tool, which contains 70 gene set libraries and is freely available to the community.

1. Dimensional models of personality: the five-factor model and the DSM-5.

PubMed

Trull, Timothy J; Widiger, Thomas A

2013-06-01

It is evident that the classification of personality disorder is shifting toward a dimensional trait model and, more specifically, the five-factor model (FFM). The purpose of this paper is to provide an overview of the FFM of personality disorder. It will begin with a description of this dimensional model of normal and abnormal personality functioning, followed by a comparison with a proposal for future revisions to DSM-5 and a discussion of its potential advantages as an integrative hierarchical model of normal and abnormal personality structure.

2. Dimensional models of personality: the five-factor model and the DSM-5

PubMed Central

Trull, Timothy J.; Widiger, Thomas A.

2013-01-01

It is evident that the classification of personality disorder is shifting toward a dimensional trait model and, more specifically, the five-factor model (FFM). The purpose of this paper is to provide an overview of the FFM of personality disorder. It will begin with a description of this dimensional model of normal and abnormal personality functioning, followed by a comparison with a proposal for future revisions to DSM-5 and a discussion of its potential advantages as an integrative hierarchical model of normal and abnormal personality structure. PMID:24174888

3. Development of Unsteady Aerodynamic and Aeroelastic Reduced-Order Models Using the FUN3D Code

NASA Technical Reports Server (NTRS)

Silva, Walter A.; Vatsa, Veer N.; Biedron, Robert T.

2009-01-01

Recent significant improvements to the development of CFD-based unsteady aerodynamic reduced-order models (ROMs) are implemented into the FUN3D unstructured flow solver. These improvements include the simultaneous excitation of the structural modes of the CFD-based unsteady aerodynamic system via a single CFD solution, minimization of the error between the full CFD and the ROM unsteady aero- dynamic solution, and computation of a root locus plot of the aeroelastic ROM. Results are presented for a viscous version of the two-dimensional Benchmark Active Controls Technology (BACT) model and an inviscid version of the AGARD 445.6 aeroelastic wing using the FUN3D code.

4. A three-dimensional ring current decay model

NASA Technical Reports Server (NTRS)

Fok, Mei-Ching; Moore, Thomas E.; Kozyra, Janet U.; Ho, George C.; Hamilton, Douglas C.

1994-01-01

This work is an extension of a previous ring current decay model. In the previous work, a two-dimensional kinetic model was constructed to study the temporal variations of the equatorially mirroring ring current ions, considering charge exchange and Coulomb drag losses along drift paths in a magnetic dipole field. In this work, particles with arbitrary pitch angle are considered. By bounce averaging the kinetic equation of the phase space density, information along magnetic field lines can be inferred from the equator. The three-dimensional model is used to simulate the recovery phase of a model great magnetic storm, similar to that which occurred in early February 1986. The initial distribution of ring current ions (at the minimum Dst) is extrapolated to all local times from AMPTE/CCE spacecraft observations on the dawn and dusk sides of the inner magnetosphere spanning the L value range L = 2.25 to 6.75. Observations by AMPTE/CCE of ring current distributions over subsequent orbits during the storm recovery phase are compared to model outputs. In general, the calculated ion fluxes are consistent with observations, except for H+ fluxes at tens of keV, which are always over-estimated. A newly-invented visualization idea, designated as a chromogram, is used to display the spatial and energy dependence of the ring current ion differential flux. Important features of storm-time ring current, such as day-night asymmetry during injection and drift hole on the dayside at low energies (less than 10 keV), are manifested in the chromogram representation. The pitch angle distribution is well fit by the function, j(sub o)(1+Ay(exp n)), where y is sine of the equatorial pitch angle. The evolution of the index n is a combined effect of charge exchange loss and particle drift. At low energies (less than 30 keV), both drift dispersion and charge exchange are important in determining n.

5. Two-Dimensional Numerical Modeling of Anthropogenic Beach Berm Erosion

Shakeri Majd, M.; Schubert, J.; Gallien, T.; Sanders, B. F.

2014-12-01

Anthropogenic beach berms (sometimes called artificial berms or artificial dunes) temporarily enhance the ability of beaches to withstand overtopping and thus guard against coastal flooding. However, the combination of a rising tide, storm surge, and/or waves may erode anthropogenic berms in a matter of hours or less and cause flooding [1]. Accurate forecasts of coastal flooding therefore demand the ability to predict where and when berms fail and the volume of water that overtops into defended coastal lowlands. Here, a two-dimensional numerical model of swash zone waves and erosion is examined as a tool for predicting the erosion of anthropogenic beach berms. The 2D model is known as a Debris Flow Model (DFM) because it tightly couples flow and sediment transport within an approximate Riemann solver and is able to resolve shocks in fluid/sediment interface [2]. The DFM also includes a two dimensional avalanching scheme to account for gravity-driven slumping of steep slopes. The performance of the DFM is examined with field-scale anthropogenic berm erosion data collected at Newport Beach, California. Results show that the DFM can be applied in the swash zone to resolve wave-by-wave flow and sediment transport. Results also show that it is possible to calibrate the model for a particular event, and then predict erosion for another event, but predictions are sensitive to model parameters, such as erosion and avalanching. References: [1] Jochen E. Schubert, Timu W. Gallien, Morteza Shakeri Majd, and Brett F. Sanders. Terrestrial laser scanning of anthropogenic beach berm erosion and overtopping. Journal of Coastal Research In-Press, 2014. [2] Morteza Shakeri Majd and Brett F. Sanders. The LHLLC scheme for Two-Layer and Two-Phase transcritical flows over a mobile bed with avalanching, wetting and drying. Advances in Water Resources, 64, 16-31, 2014.

6. One-dimensional cloud fluid model for propagating star formation

NASA Technical Reports Server (NTRS)

Titus, Timothy N.; Struck-Marcell, Curtis

1990-01-01

The aim of this project was to study the propagation of star formation (SF) with a self-consistent deterministic model for the interstellar gas. The questions of under what conditions does star formation propagate in this model and what are the mechanisms of the propagation are explored. Here, researchers used the deterministic Oort-type cloud fluid model of Scalo and Struck-Marcell (1984, also see the review of Struck-Marcell, Scalo and Appleton 1987). This cloud fluid approach includes simple models for the effects of cloud collisional coalescence or disruption, collisional energy dissipation, and cloud disruption and acceleration as the result of young star winds, HII regions and supernovae. An extensive one-zone parameter study is presented in Struck-Marcell and Scalo (1987). To answer the questions above, researchers carried out one-dimensional calculations for an annulus within a galactic disk, like the so-called solar neighborhood of the galactic chemical evolution. In the calculations the left-hand boundary is set equal to the right hand boundary. The calculation is obviously idealized; however, it is computationally convenient to study the first order effects of propagating star formation. The annulus was treated as if it were at rest, i.e., in the local rotating frame. This assumption may remove some interesting effects of a supersonic gas flow, but was necessary to maintain a numerical stability in the annulus. The results on the one-dimensional propagation of SF in the Oort cloud fluid model follow: (1) SF is propagated by means of hydrodynamic waves, which can be generated by external forces or by the pressure generated by local bursts. SF is not effectively propagated via diffusion or variation in cloud interaction rates without corresponding density and velocity changes. (2) The propagation and long-range effects of SF depend on how close the gas density is to the critical threshold value, i.e., on the susceptibility of the medium.

7. A Reduced-Order Model of Transport Phenomena for Power Plant Simulation

SciTech Connect

Paul Cizmas; Brian Richardson; Thomas Brenner; Raymond Fontenot

2009-09-30

A reduced-order model based on proper orthogonal decomposition (POD) has been developed to simulate transient two- and three-dimensional isothermal and non-isothermal flows in a fluidized bed. Reduced-order models of void fraction, gas and solids temperatures, granular energy, and z-direction gas and solids velocity have been added to the previous version of the code. These algorithms are presented and their implementation is discussed. Verification studies are presented for each algorithm. A number of methods to accelerate the computations performed by the reduced-order model are presented. The errors associated with each acceleration method are computed and discussed. Using a combination of acceleration methods, a two-dimensional isothermal simulation using the reduced-order model is shown to be 114 times faster than using the full-order model. In the pursue of achieving the objectives of the project and completing the tasks planned for this program, several unplanned and unforeseen results, methods and studies have been generated. These additional accomplishments are also presented and they include: (1) a study of the effect of snapshot sampling time on the computation of the POD basis functions, (2) an investigation of different strategies for generating the autocorrelation matrix used to find the POD basis functions, (3) the development and implementation of a bubble detection and tracking algorithm based on mathematical morphology, (4) a method for augmenting the proper orthogonal decomposition to better capture flows with discontinuities, such as bubbles, and (5) a mixed reduced-order/full-order model, called point-mode proper orthogonal decomposition, designed to avoid unphysical due to approximation errors. The limitations of the proper orthogonal decomposition method in simulating transient flows with moving discontinuities, such as bubbling flows, are discussed and several methods are proposed to adapt the method for future use.

8. ODTLES : a model for 3D turbulent flow based on one-dimensional turbulence modeling concepts.

SciTech Connect

McDermott, Randy; Kerstein, Alan R.; Schmidt, Rodney Cannon

2005-01-01

This report describes an approach for extending the one-dimensional turbulence (ODT) model of Kerstein [6] to treat turbulent flow in three-dimensional (3D) domains. This model, here called ODTLES, can also be viewed as a new LES model. In ODTLES, 3D aspects of the flow are captured by embedding three, mutually orthogonal, one-dimensional ODT domain arrays within a coarser 3D mesh. The ODTLES model is obtained by developing a consistent approach for dynamically coupling the different ODT line sets to each other and to the large scale processes that are resolved on the 3D mesh. The model is implemented computationally and its performance is tested and evaluated by performing simulations of decaying isotropic turbulence, a standard turbulent flow benchmarking problem.

9. Toward a General Nonlinear Model of Reduced Scale UAVs

Chriette, A.; Cheviron, T.; Plestan, F.

2009-03-01

This paper proposes, through a survey of models of several UAV-Structures, a generic nonlinear model for reduced scale aerial robotic vehicles (6 DOF)*. Dynamics of an aircraft and some VTOL UAV (quadricopter, ducted fan and classical helicopter) are illustrated. This generic model focuses only on the key physical efforts acting on the dynamics in order to be sufficiently simple to design a controller. The Small Body Forces expression which can introduce a zero dynamics is then discussed.

10. Two-dimensional MHD generator model. [GEN code

SciTech Connect

Geyer, H. K.; Ahluwalia, R. K.; Doss, E. D.

1980-09-01

A steady state, two-dimensional MHD generator code, GEN, is presented. The code solves the equations of conservation of mass, momentum, and energy, using a Von Mises transformation and a local linearization of the equations. By splitting the source terms into a part proportional to the axial pressure gradient and a part independent of the gradient, the pressure distribution along the channel is easily obtained to satisfy various criteria. Thus, the code can run effectively in both design modes, where the channel geometry is determined, and analysis modes, where the geometry is previously known. The code also employs a mixing length concept for turbulent flows, Cebeci and Chang's wall roughness model, and an extension of that model to the effective thermal diffusities. Results on code validation, as well as comparisons of skin friction and Stanton number calculations with experimental results, are presented.

11. Two-dimensional electron beam charging model for polymer films

NASA Technical Reports Server (NTRS)

Reeves, R. D.; Balmain, K. G.

1981-01-01

A two-dimensional model is developed to describe the charging of strips of thin polymer films above a grounded substrate exposed to a uniform mono-energetic electron beam. The study is motivated by the observed anomalous behavior of geosynchronous satellites, which has been attributed to differential charging of the satellite surfaces exposed to magnetospheric electrons. Surface and bulk electric fields are calcuated at steady state in order to identify regions of high electrical stress, with emphasis on behavior near the material's edge. The model is used to study the effects of some of the experimental parameters, notably beam energy, beam angle of incidence, beam current density, material thickness and material width. Also examined are the consequences of a central gap in the material and a discontinuity in the material thickness.

12. Two-Dimensional Massless Light Front Fields and Solvable Models

Martinovic̆, L'ubomír; Grangé, Pierre

2016-07-01

Quantum field theory formulated in terms of light front (LF) variables has a few attractive as well as some puzzling features. The latter hindered a wider acceptance of LF methods. In two space-time dimensions, it has been a long-standing puzzle how to correctly quantize massless fields, in particular fermions. Here we show that two-dimensional massless LF fields (scalar and fermion) can be recovered in a simple way as limits of the corresponding massive fields and thereby quantized without any loss of physical information. Bosonization of the fermion field then follows in a straightforward manner and the solvable models can be studied directly in the LF theory. We sketch the LF operator solution of the Thirring-Wess model and also point out the closeness of the massless LF fields to those of conformal field theory.

13. Heat string model of bi-dimensional dc Glidarc

Pellerin, S.; Richard, F.; Chapelle, J.; Cormier, J.-M.; Musiol, K.

2000-10-01

The gliding arc discharge (Glidarc') is the subject of renewed interest in application to a variety of chemical reactions. The gliding arc creates a weakly ionized gas string' between two horn-shaped electrodes. In this paper, we present a simple model for a bi-dimensional dc Glidarc working in air, in which the conducting zone of the discharge that is heated by the Joule effect is considered as a hot wire cooled by an air flow. Inside this wire, the heat transfer results from thermal conduction. The exchange of heat between the hot wire and the air flow is assured by convection and depends on the wire radius and the relative velocity of the arc with respect to the gas flow. The model correctly describes experimental results and allows us to predict the working parameters of the Glidarc in different experimental situations.

14. Three-dimensional chemotaxis model for a crawling neutrophil.

PubMed

Song, Jihwan; Kim, Dongchoul

2010-11-01

Chemotactic cell migration is a fundamental phenomenon in complex biological processes. A rigorous understanding of the chemotactic mechanism of crawling cells has important implications for various medical and biological applications. In this paper, we propose a three-dimensional model of a single crawling cell to study its chemotaxis. A single-cell study of chemotaxis has an advantage over studies of a population of cells in that it provides a clearer observation of cell migration, which leads to more accurate assessments of chemotaxis. The model incorporates the surface energy of the cell and the interfacial interaction between the cell and substrate. The semi-implicit Fourier spectral method is applied to achieve high efficiency and numerical stability. The simulation results provide the kinetic and morphological traits of a crawling cell during chemotaxis.

15. The cleft ion fountain - A two-dimensional kinetic model

NASA Technical Reports Server (NTRS)

Horwitz, J. L.; Lockwood, M.

1985-01-01

The transport of ionospheric ions from a source in the polar cleft ionosphere through the polar magnetosphere is investigated using a two-dimensional, kinetic, trajectory-based code. The transport model includes the effects of gravitation, longitudinal magnetic gradient force, convection electric fields, and parallel electric fields. Individual ion trajectories as well as distribution functions and resulting bulk parameters of density, parallel average energy, and parallel flux for a presumed cleft ionosphere source distribution are presented for various conditions to illustrate parametrically the dependences on source energies, convection electric field strengths, ion masses, and parallel electric field strengths. The essential features of the model are consistent with the concept of a cleft-based ion fountain supplying ionospheric ions to the polar magnetosphere, and the resulting plasma distributions and parameters are in general agreement with recent low-energy ion measurements from the DE 1 satellite.

16. Quantum quench dynamics in analytically solvable one-dimensional models

Iucci, Anibal; Cazalilla, Miguel A.; Giamarchi, Thierry

2008-03-01

In connection with experiments in cold atomic systems, we consider the non-equilibrium dynamics of some analytically solvable one-dimensional systems which undergo a quantum quench. In this quench one or several of the parameters of the Hamiltonian of an interacting quantum system are changed over a very short time scale. In particular, we concentrate on the Luttinger model and the sine-Gordon model in the Luther-Emery point. For the latter, we show that the order parameter and the two-point correlation function relax in the long time limit to the values determined by a generalized Gibbs ensemble first discussed by J. T. Jaynes [Phys. Rev. 106, 620 (1957); 108, 171 (1957)], and recently conjectured by M. Rigol et.al. [Phys. Rev. Lett. 98, 050405 (2007)] to apply to the non-equilibrium dynamics of integrable systems.

17. Three-Dimensional Numerical Modeling of Magnetohydrodynamic Augmented Propulsion Experiment

NASA Technical Reports Server (NTRS)

Turner, M. W.; Hawk, C. W.; Litchford, R. J.

2009-01-01

Over the past several years, NASA Marshall Space Flight Center has engaged in the design and development of an experimental research facility to investigate the use of diagonalized crossed-field magnetohydrodynamic (MHD) accelerators as a possible thrust augmentation device for thermal propulsion systems. In support of this effort, a three-dimensional numerical MHD model has been developed for the purpose of analyzing and optimizing accelerator performance and to aid in understanding critical underlying physical processes and nonideal effects. This Technical Memorandum fully summarizes model development efforts and presents the results of pretest performance optimization analyses. These results indicate that the MHD accelerator should utilize a 45deg diagonalization angle with the applied current evenly distributed over the first five inlet electrode pairs. When powered at 100 A, this configuration is expected to yield a 50% global efficiency with an 80% increase in axial velocity and a 50% increase in centerline total pressure.

18. One dimensional modeling of blood flow in large networks

Wang, Xiaofei; Lagree, Pierre-Yves; Fullana, Jose-Maria; Lorthois, Sylvie; Institut de Mecanique des Fluides de Toulouse Collaboration

2014-11-01

A fast and valid simulation of blood flow in large networks of vessels can be achieved with a one-dimensional viscoelastic model. In this paper, we developed a parallel code with this model and computed several networks: a circle of arteries, a human systemic network with 55 arteries and a vascular network of mouse kidney with more than one thousand segments. The numerical results were verified and the speedup of parallel computing was tested on multi-core computers. The evolution of pressure distributions in all the networks were visualized and we can see clearly the propagation patterns of the waves. This provides us a convenient tool to simulate blood flow in networks.

19. Linking a one-dimensional pesticide fate model to a three-dimensional groundwater model to simulate pollution risks of shallow and deep groundwater underlying fractured till

Stenemo, Fredrik; Jørgensen, Peter R.; Jarvis, Nicholas

2005-09-01

The one-dimensional pesticide fate model MACRO was loose-linked to the three-dimensional discrete fracture/matrix diffusion model FRAC3DVS to describe transport of the pesticide mecoprop in a fractured moraine till and local sand aquifer (5-5.5 m depth) overlying a regional limestone aquifer (16 m depth) at Havdrup, Denmark. Alternative approaches to describe the upper boundary in the groundwater model were examined. Field-scale simulations were run to compare a uniform upper boundary condition with a spatially variable upper boundary derived from Monte-Carlo simulations with MACRO. Plot-scale simulations were run to investigate the influence of the temporal resolution of the upper boundary conditions for fluxes in the groundwater model and the effects of different assumptions concerning the macropore/fracture connectivity between the two models. The influence of within-field variability of leaching on simulated mecoprop concentrations in the local aquifer was relatively small. A fully transient simulation with FRAC3DVS gave 20 times larger leaching to the regional aquifer compared to the case with steady-state water flow, assuming full connectivity with respect to macropores/fractures across the boundary between the two models. For fully transient simulations 'disconnecting' the macropores/fractures at the interface between the two models reduced leaching by a factor 24. A fully connected, transient simulation with FRAC3DVS, with spatially uniform upper boundary fluxes derived from a MACRO simulation with 'effective' parameters is therefore recommended for assessing leaching risks to the regional aquifer, at this, and similar sites.

20. Reduced Order Models for Dynamic Behavior of Elastomer Damping Devices

Morin, B.; Legay, A.; Deü, J.-F.

2016-09-01

In the context of passive damping, various mechanical systems from the space industry use elastomer components (shock absorbers, silent blocks, flexible joints...). The material of these devices has frequency, temperature and amplitude dependent characteristics. The associated numerical models, using viscoelastic and hyperelastic constitutive behaviour, may become computationally too expensive during a design process. The aim of this work is to propose efficient reduced viscoelastic models of rubber devices. The first step is to choose an accurate material model that represent the viscoelasticity. The second step is to reduce the rubber device finite element model to a super-element that keeps the frequency dependence. This reduced model is first built by taking into account the fact that the device's interfaces are much more rigid than the rubber core. To make use of this difference, kinematical constraints enforce the rigid body motion of these interfaces reducing the rubber device model to twelve dofs only on the interfaces (three rotations and three translations per face). Then, the superelement is built by using a component mode synthesis method. As an application, the dynamic behavior of a structure supported by four hourglass shaped rubber devices under harmonic loads is analysed to show the efficiency of the proposed approach.

1. Reduced-order models for vertical human-structure interaction

Van Nimmen, Katrien; Lombaert, Geert; De Roeck, Guido; Van den Broeck, Peter

2016-09-01

For slender and lightweight structures, the vibration serviceability under crowd- induced loading is often critical in design. Currently, designers rely on equivalent load models, upscaled from single-person force measurements. Furthermore, it is important to consider the mechanical interaction with the human body as this can significantly reduce the structural response. To account for these interaction effects, the contact force between the pedestrian and the structure can be modelled as the superposition of the force induced by the pedestrian on a rigid floor and the force resulting from the mechanical interaction between the structure and the human body. For the case of large crowds, however, this approach leads to models with a very high system order. In the present contribution, two equivalent reduced-order models are proposed to approximate the dynamic behaviour of the full-order coupled crowd-structure system. A numerical study is performed to evaluate the impact of the modelling assumptions on the structural response to pedestrian excitation. The results show that the full-order moving crowd model can be well approximated by a reduced-order model whereby the interaction with the pedestrians in the crowd is modelled using a single (equivalent) SDOF system.

2. Dynamic test/analysis correlation using reduced analytical models

NASA Technical Reports Server (NTRS)

Mcgowan, Paul E.; Angelucci, A. F.; Javeed, Mehzad

1992-01-01

Test/analysis correlation is an important aspect of the verification of analysis models which are used to predict on-orbit response characteristics of large space structures. This paper presents results of a study using reduced analysis models for performing dynamic test/analysis correlation. The reduced test-analysis model (TAM) has the same number and orientation of DOF as the test measurements. Two reduction methods, static (Guyan) reduction and the Improved Reduced System reduction, are applied to the test/analysis correlation of a laboratory truss structure. Simulated test results and modal test data are used to examine the performance of each method. It is shown that selection of DOF to be retained in the TAM is critical when large structural masses are involved. In addition, the use of modal test results may provide difficulties in TAM accuracy even if a large number of DOF are retained in the TAM.

3. Dynamic test/analysis correlation using reduced analytical models

NASA Technical Reports Server (NTRS)

Mcgowan, Paul E.; Angelucci, A. Filippo; Javeed, Mehzad

1992-01-01

Test/analysis correlation is an important aspect of the verification of analysis models which are used to predict on-orbit response characteristics of large space structures. This paper presents results of a study using reduced analysis models for performing dynamic test/analysis correlation. The reduced test-analysis model (TAM) has the same number and orientation of DOF as the test measurements. Two reduction methods, static (Guyan) reduction and the Improved Reduced System (IRS) reduction, are applied to the test/analysis correlation of a laboratory truss structure. Simulated test results and modal test data are used to examine the performance of each method. It is shown that selection of DOF to be retained in the TAM is critical when large structural masses are involved. In addition, the use of modal test results may provide difficulties in TAM accuracy even if a large number of DOF are retained in the TAM.

4. THREE-DIMENSIONAL MODELING OF HOT JUPITER ATMOSPHERIC FLOWS

SciTech Connect

Rauscher, Emily; Menou, Kristen

2010-05-10

We present a three-dimensional hot Jupiter model, extending from 200 bar to 1 mbar, using the Intermediate General Circulation Model from the University of Reading. Our horizontal spectral resolution is T31 (equivalent to a grid of 48 x 96), with 33 logarithmically spaced vertical levels. A simplified (Newtonian) scheme is employed for the radiative forcing. We adopt a physical setup nearly identical to the model of HD 209458b by Cooper and Showman to facilitate a direct model inter-comparison. Our results are broadly consistent with theirs but significant differences also emerge. The atmospheric flow is characterized by a super-rotating equatorial jet, transonic wind speeds, and eastward advection of heat away from the dayside. We identify a dynamically induced temperature inversion ('stratosphere') on the planetary dayside and find that temperatures at the planetary limb differ systematically from local radiative equilibrium values, a potential source of bias for transit spectroscopic interpretations. While our model atmosphere is quasi-identical to that of Cooper and Showman and we solve the same meteorological equations, we use different algorithmic methods, spectral-implicit versus grid-explicit, which are known to yield fully consistent results in the Earth modeling context. The model discrepancies identified here indicate that one or both numerical methods do not faithfully capture all of the atmospheric dynamics at work in the hot Jupiter context. We highlight the emergence of a shock-like feature in our model, much like that reported recently by Showman et al., and suggest that improved representations of energy conservation may be needed in hot Jupiter atmospheric models, as emphasized by Goodman.

5. Large-Scale Sediment Routing: Development of a One-Dimensional Model Incorporating Sand Storage

Wiele, S. M.; Wilcock, P. R.; Grams, P. E.

2005-12-01

Routing sediment through long reaches and networks requires a balance between model efficiency, data availability, and accurate representation of sediment flux and storage. The first two often constrain the appropriate model to one dimension, but such models are unable to capture changes in sediment storage in side-channel environments, which are typically driven by two-dimensional transport fields. Side-channel environments are especially important in canyon channels. Routing of sand in canyon channels can be further complicated by transport of sand over a cobble or boulder bed and by remote locations, which can hinder measurement of channel shape. We have produced a one-dimensional model that routes water and sand through the Colorado River below Glen Canyon Dam in Arizona. Our model differs from conventional one-dimensional models in several significant ways: (1) exchange of sand between the main downstream current and eddies, which cannot be directly represented by a one-dimensional model, is included by parameterizing predictions over a wide range of conditions from a multidimensional model; (2) suspended-sand transport over an extremely rough and sparsely sand-covered bed, which is not accurately represented in conventional sand-transport relations or boundary conditions, is calculated in our model with newly developed algorithms (see Grams and others, this meeting); (3) the channel is represented by reach-averaged properties, thereby reducing data requirements and increasing model efficiency; and (4) the model is coupled with an unsteady-flow model, thereby accounting for frequent changes in discharge produced by variations in releases in this power-producing regulated river. Numerical models can contribute to the explanation of observed changes in sand storage, extrapolate field observations to unobserved flows, and evaluate alternative dam-operation strategies for preserving the sand resource. Model applications can address several significant management

6. Preliminary results of a three-dimensional radiative transfer model

SciTech Connect

OHirok, W.

1995-09-01

Clouds act as the primary modulator of the Earths radiation at the top of the atmosphere, within the atmospheric column, and at the Earths surface. They interact with both shortwave and longwave radiation, but it is primarily in the case of shortwave where most of the uncertainty lies because of the difficulties in treating scattered solar radiation. To understand cloud-radiative interactions, radiative transfer models portray clouds as plane-parallel homogeneous entities to ease the computational physics. Unfortunately, clouds are far from being homogeneous, and large differences between measurement and theory point to a stronger need to understand and model cloud macrophysical properties. In an attempt to better comprehend the role of cloud morphology on the 3-dimensional radiation field, a Monte Carlo model has been developed. This model can simulate broadband shortwave radiation fluxes while incorporating all of the major atmospheric constituents. The model is used to investigate the cloud absorption anomaly where cloud absorption measurements exceed theoretical estimates and to examine the efficacy of ERBE measurements and cloud field experiments. 3 figs.

7. A three-dimensional computational model of collagen network mechanics.

PubMed

Lee, Byoungkoo; Zhou, Xin; Riching, Kristin; Eliceiri, Kevin W; Keely, Patricia J; Guelcher, Scott A; Weaver, Alissa M; Jiang, Yi

2014-01-01

Extracellular matrix (ECM) strongly influences cellular behaviors, including cell proliferation, adhesion, and particularly migration. In cancer, the rigidity of the stromal collagen environment is thought to control tumor aggressiveness, and collagen alignment has been linked to tumor cell invasion. While the mechanical properties of collagen at both the single fiber scale and the bulk gel scale are quite well studied, how the fiber network responds to local stress or deformation, both structurally and mechanically, is poorly understood. This intermediate scale knowledge is important to understanding cell-ECM interactions and is the focus of this study. We have developed a three-dimensional elastic collagen fiber network model (bead-and-spring model) and studied fiber network behaviors for various biophysical conditions: collagen density, crosslinker strength, crosslinker density, and fiber orientation (random vs. prealigned). We found the best-fit crosslinker parameter values using shear simulation tests in a small strain region. Using this calibrated collagen model, we simulated both shear and tensile tests in a large linear strain region for different network geometry conditions. The results suggest that network geometry is a key determinant of the mechanical properties of the fiber network. We further demonstrated how the fiber network structure and mechanics evolves with a local formation, mimicking the effect of pulling by a pseudopod during cell migration. Our computational fiber network model is a step toward a full biomechanical model of cellular behaviors in various ECM conditions.

8. Three-dimensional lattice Boltzmann model for magnetic reconnection

SciTech Connect

Mendoza, M.; Munoz, J. D.

2008-02-15

We develop a three-dimensional (3D) lattice Boltzmann model that recovers in the continuous limit the two-fluids theory for plasmas, and consequently includes the generalized Ohm's law. The model reproduces the magnetic reconnection process just by giving the right initial equilibrium conditions in the magnetotail, without any assumption on the resistivity in the diffusive region. In this model, the plasma is handled similar to two fluids with an interaction term, each one with distribution functions associated to a cubic lattice with 19 velocities (D3Q19). The electromagnetic fields are considered as a third fluid with an external force on a cubic lattice with 13 velocities (D3Q13). The model can simulate either viscous fluids in the incompressible limit or nonviscous compressible fluids, and successfully reproduces both the Hartmann flow and the magnetic reconnection in the magnetotail. The reconnection rate in the magnetotail obtained with this model lies between R=0.062 and R=0.073, in good agreement with the observations.

9. Use of a clay modeling task to reduce chocolate craving.

PubMed

Andrade, Jackie; Pears, Sally; May, Jon; Kavanagh, David J

2012-06-01

10. Two-dimensional and three-dimensional digital flow models of the Salinas Valley ground-water basin, California

USGS Publications Warehouse

Durbin, T.J.; Kapple, G.W.; Freckleton, J.R.

1978-01-01

The Salinas Valley ground-water basin is in central coastal California. The ground-water basin extends from Monterey Bay southeastward along the Salinas River to San Ardo, a distance of about 70 miles, and has a maximum thickness of about 2,000 feet. Annual recharge to the ground-water basin, which is derived mostly from the Salinas River, is about 290,000 acre-feet. Annual discharge, which is mostly from pumpage but also includes the consumptive use of ground water by riparian vegetation along the Salinas River, is about 507,000 acre-feet. About 45 percent of the pumpage, or about 217,000 acre-feet of water annually, returns to the ground-water system. A system of interacting hydrologic models was developed for the Salinas Valley. These models include the small-stream model, river model, two-dimensional ground-water model, and three-dimensional ground-water model. The small-stream model simulates ground-water recharge from small streams that are tributary to the Salinas River. The river model simulates ground-water recharge from the surface-water discharge in the Salinas River. The two-dimensional and three-dimensional ground-water models simulate hydraulic head in the ground-water basin. (Woodard-USGS)

11. A 3-dimensional model for teaching local flaps using porcine skin.

PubMed

Hassan, Zahid; Hogg, Fiona; Graham, Ken

2014-10-01

The European Working Time Directive and streamlined training has led to reduced training time. Surgery, as an experience-dependent craft specialty is affected more than other medical specialties. Trainees want to maximize all training opportunities in the clinical setting, and having predeveloped basic skills acquired on a simulated model can facilitate this.Here we describe the use of a novel model to design and raise local flaps in the face and scalp regions. The model consists of mannequin heads draped with porcine skin which is skewered with pins at strategic points to give a 3-dimensional model which closely resembles a cadaveric head.The advantages of this model are that it is life size and incorporates all the relevant anatomical features, which can be drawn on if required.This model was used on a recent course, Intermediate Skills in Plastic Surgery: Flaps Around the Face, at the Royal College of Surgeons England. The trainees found that practicing on the porcine skin gave them an opportunity to master the basics of flap design and implementation.In summary, this innovative 3-dimensional training model has received high levels of satisfaction and is currently as close as we can get to cadaveric dissection without the constraints and cost of using human tissue.

12. Semiautomated four-dimensional computed tomography segmentation using deformable models

SciTech Connect

Ragan, Dustin; Starkschall, George; McNutt, Todd; Kaus, Michael; Guerrero, Thomas; Stevens, Craig W.

2005-07-15

The purpose of this work is to demonstrate a proof of feasibility of the application of a commercial prototype deformable model algorithm to the problem of delineation of anatomic structures on four-dimensional (4D) computed tomography (CT) image data sets. We acquired a 4D CT image data set of a patient's thorax that consisted of three-dimensional (3D) image data sets from eight phases in the respiratory cycle. The contours of the right and left lungs, cord, heart, and esophagus were manually delineated on the end inspiration data set. An interactive deformable model algorithm, originally intended for deforming an atlas-based model surface to a 3D CT image data set, was applied in an automated fashion. Triangulations based on the contours generated on each phase were deformed to the CT data set on the succeeding phase to generate the contours on that phase. Deformation was propagated through the eight phases, and the contours obtained on the end inspiration data set were compared with the original manually delineated contours. Structures defined by high-density gradients, such as lungs, cord, and heart, were accurately reproduced, except in regions where other gradient boundaries may have confused the algorithm, such as near bronchi. The algorithm failed to accurately contour the esophagus, a soft-tissue structure completely surrounded by tissue of similar density, without manual interaction. This technique has the potential to facilitate contour delineation in 4D CT image data sets; and future evolution of the software is expected to improve the process.

13. Three-dimensional pseudospectral modelling of cardiac propagation in an inhomogeneous anisotropic tissue.

PubMed

Ng, K T; Yan, R

2003-11-01

Various investigators have used the monodomain model to study cardiac propagation behaviour. In many cases, the governing non-linear parabolic equation is solved using the finite-difference method. An adequate discretisation of cardiac tissue with realistic dimensions, however, often leads to a large model size that is computationally demanding. Recently, it has been demonstrated, for a two-dimensional homogeneous monodomain, that the Chebyshev pseudospectral method can offer higher computational efficiency than the finite-difference technique. Here, an extension of the pseudospectral approach to a three-dimensional inhomogeneous case with fibre rotation is presented. The unknown transmembrane potential is expanded in terms of Chebyshev polynomial trial functions, and the monodomain equation is enforced at the Gauss-Lobatto node points. The forward Euler technique is used to advance the solution in time. Numerical results are presented that demonstrate that the Chebyshev pseudospectral method offered an even larger improvement in computational performance over the finite-difference method in the three-dimensional case. Specifically, the pseudospectral method allowed the number of nodes to be reduced by approximately 85 times, while the same solution accuracy was maintained. Depending on the model size, simulations were performed with approximately 18-41 times less memory and approximately 99-169 times less CPU time.

14. High performance computing for three-dimensional agent-based molecular models.

PubMed

Pérez-Rodríguez, G; Pérez-Pérez, M; Fdez-Riverola, F; Lourenço, A

2016-07-01

Agent-based simulations are increasingly popular in exploring and understanding cellular systems, but the natural complexity of these systems and the desire to grasp different modelling levels demand cost-effective simulation strategies and tools. In this context, the present paper introduces novel sequential and distributed approaches for the three-dimensional agent-based simulation of individual molecules in cellular events. These approaches are able to describe the dimensions and position of the molecules with high accuracy and thus, study the critical effect of spatial distribution on cellular events. Moreover, two of the approaches allow multi-thread high performance simulations, distributing the three-dimensional model in a platform independent and computationally efficient way. Evaluation addressed the reproduction of molecular scenarios and different scalability aspects of agent creation and agent interaction. The three approaches simulate common biophysical and biochemical laws faithfully. The distributed approaches show improved performance when dealing with large agent populations while the sequential approach is better suited for small to medium size agent populations. Overall, the main new contribution of the approaches is the ability to simulate three-dimensional agent-based models at the molecular level with reduced implementation effort and moderate-level computational capacity. Since these approaches have a generic design, they have the major potential of being used in any event-driven agent-based tool.

15. Using three-dimensional protein structure to model protein aggregation: Collagen fibrillogenesis in vitro

Anderson, Darren; Graovac, Ivan; Rainey, Jan; Goh, M. Cynthia

2004-03-01

Collagen is the most prevalent protein in mammals. In vitro, it self-assembles into a variety of fibrillar constructs which depend on solution conditions. These assembly processes are still not understood in a thorough manner, in part because of the lack of a three-dimensional structure of the rather large monomer ( 3000 amino acids). Using a statistically-based reduced-rotamer representation alongside a triple-helical backbone parameterization, we have created a 3-D collagen model, and examined the location of charges as a function of pH. Using this representation, we propose a mechanism of assembly that accounts for the morphology (observed using atomic force microscopy) of the most common fibrillar construct. Furthermore, we demonstrate that the experimentally observed effects of pH and ionic strength on the assembly process can be related to the three-dimensional structure of the monomer.

16. Reduced complexity structural modeling for automated airframe synthesis

NASA Technical Reports Server (NTRS)

Hajela, Prabhat

1987-01-01

A procedure is developed for the optimum sizing of wing structures based on representing the built-up finite element assembly of the structure by equivalent beam models. The reduced-order beam models are computationally less demanding in an optimum design environment which dictates repetitive analysis of several trial designs. The design procedure is implemented in a computer program requiring geometry and loading information to create the wing finite element model and its equivalent beam model, and providing a rapid estimate of the optimum weight obtained from a fully stressed design approach applied to the beam. The synthesis procedure is demonstrated for representative conventional-cantilever and joined wing configurations.

17. Three Dimensional TEM Forward Modeling Using FDTD Accelerated by GPU

Li, Z.; Huang, Q.

2015-12-01

Three dimensional inversion of transient electromagnetic (TEM) data is still challenging. The inversion speed mostly depends on the forward modeling. Finite-difference time-domain (FDTD) method is one of the popular forward modeling scheme. In an explicit type, which is based on the Du Fort-Frankel scheme, the time step is under the constraint of quasi-static approximation. Often an upward-continuation boundary condition (UCBC) is applied on the earth-air surface to avoid time stepping in the model air. However, UCBC is not suitable for models with topography and has a low parallel efficiency. Modeling without UCBC may cause a much smaller time step because of the resistive attribute of the air and the quasi-static constraint, which may also low the efficiency greatly. Our recent research shows that the time step in the model air is not needed to be constrained by the quasi-static approximation, which can let the time step without UCBC much closer to that with UCBC. The parallel performance of FDTD is then largely released. On a computer with a 4-core CPU, this newly developed method is obviously faster than the method using UCBC. Besides, without UCBC, this method can be easily accelerated by Graphics Processing Unit (GPU). On a computer with a CPU of 4790k@4.4GHz and a GPU of GTX 970, the speed accelerated by CUDA is almost 10 times of that using CPU only. For a model with a grid size of 140×140×130, if the conductivity of the model earth is 0.02S/m, and the minimal space interval is 15m, it takes only 80 seconds to evolve the field from excitation to 0.032s.

18. Parameterized reduced-order models using hyper-dual numbers.

SciTech Connect

Fike, Jeffrey A.; Brake, Matthew Robert

2013-10-01

The goal of most computational simulations is to accurately predict the behavior of a real, physical system. Accurate predictions often require very computationally expensive analyses and so reduced order models (ROMs) are commonly used. ROMs aim to reduce the computational cost of the simulations while still providing accurate results by including all of the salient physics of the real system in the ROM. However, real, physical systems often deviate from the idealized models used in simulations due to variations in manufacturing or other factors. One approach to this issue is to create a parameterized model in order to characterize the effect of perturbations from the nominal model on the behavior of the system. This report presents a methodology for developing parameterized ROMs, which is based on Craig-Bampton component mode synthesis and the use of hyper-dual numbers to calculate the derivatives necessary for the parameterization.

19. Three-dimensional modeling of hearing in Delphinus delphis.

PubMed

Aroyan, J L

2001-12-01

Physical modeling is a fertile approach to investigating sound emission and reception (hearing) in marine mammals. A method for simulation of hearing was developed combining three-dimensional acoustic propagation and extrapolation techniques with a novel approach to modeling the acoustic parameters of mammalian tissues. Models of the forehead and lower jaw tissues of the common dolphin, Delphinus delphis, were created in order to simulate the biosonar emission and hearing processes. This paper outlines the methods used in the hearing simulations and offers observations concerning the mechanisms of acoustic reception in this dolphin based on model results. These results include: (1) The left and right mandibular fat bodies were found to channel sound incident from forward directions to the left and right tympanic bulla and to create sharp maxima against the lateral surfaces of each respective bulla; (2) The soft tissues of the lower jaw improved the forward directivity of the simulated receptivity patterns; (3) A focal property of the lower-jaw pan bones appeared to contribute to the creation of distinct forward receptivity peaks for each ear; (4) The reception patterns contained features that may correspond to lateral hearing pathways. A "fast" lens mechanism is proposed to explain the focal contribution of the pan bones in this dolphin. Similar techniques may be used to study hearing in other marine mammals.

20. Persistence in a Two-Dimensional Moving-Habitat Model.

PubMed

Phillips, Austin; Kot, Mark

2015-11-01

Environmental changes are forcing many species to track suitable conditions or face extinction. In this study, we use a two-dimensional integrodifference equation to analyze whether a population can track a habitat that is moving due to climate change. We model habitat as a simple rectangle. Our model quickly leads to an eigenvalue problem that determines whether the population persists or declines. After surveying techniques to solve the eigenvalue problem, we highlight three findings that impact conservation efforts such as reserve design and species risk assessment. First, while other models focus on habitat length (parallel to the direction of habitat movement), we show that ignoring habitat width (perpendicular to habitat movement) can lead to overestimates of persistence. Dispersal barriers and hostile landscapes that constrain habitat width greatly decrease the population's ability to track its habitat. Second, for some long-distance dispersal kernels, increasing habitat length improves persistence without limit; for other kernels, increasing length is of limited help and has diminishing returns. Third, it is not always best to orient the long side of the habitat in the direction of climate change. Evidence suggests that the kurtosis of the dispersal kernel determines whether it is best to have a long, wide, or square habitat. In particular, populations with platykurtic dispersal benefit more from a wide habitat, while those with leptokurtic dispersal benefit more from a long habitat. We apply our model to the Rocky Mountain Apollo butterfly (Parnassius smintheus).

1. Correlation driven dimensional reduction in a two orbital Hubbard model

Mukherjee, Anamitra; Patel, Niravkumar D.; Moreo, Adrianna; Dagotto, Elbio

We apply a recently developed many-body technique that allows for the incorporation of thermal effects, to a two orbital Hubbard model of relevance for the pnictides. In this `Mean Field-Monte Carlo' (MF-MC) approach, we first perform a mean field (MF) decomposition of the Hubbard model and then treat the mean field parameters via the standard finite-temperature classical Monte Carlo (MC). We have earlier established that for the one orbital Hubbard model, this MF-MC approach provides remarkable improvement over simple finite-temperature mean field methods and is in good agreement with Determinantal Quantum Monte Carlo results. In this talk we will discuss our MC-MF results applied to the two orbital Hubbard model with degenerate dxz and dyz orbitals for the undoped pnictides. The onsite repulsion strength U vs. temperature phase diagram is rich and has a narrow window of nematicity above the N'eel temperature. Our main result is the discovery of a novel intermediate coupling regime characterized by an unexpected spontaneous dimensional reduction that renders one direction insulating and the other metallic.

2. An adaptive high-dimensional stochastic model representation technique for the solution of stochastic partial differential equations

SciTech Connect

Ma Xiang; Zabaras, Nicholas

2010-05-20

A computational methodology is developed to address the solution of high-dimensional stochastic problems. It utilizes high-dimensional model representation (HDMR) technique in the stochastic space to represent the model output as a finite hierarchical correlated function expansion in terms of the stochastic inputs starting from lower-order to higher-order component functions. HDMR is efficient at capturing the high-dimensional input-output relationship such that the behavior for many physical systems can be modeled to good accuracy only by the first few lower-order terms. An adaptive version of HDMR is also developed to automatically detect the important dimensions and construct higher-order terms using only the important dimensions. The newly developed adaptive sparse grid collocation (ASGC) method is incorporated into HDMR to solve the resulting sub-problems. By integrating HDMR and ASGC, it is computationally possible to construct a low-dimensional stochastic reduced-order model of the high-dimensional stochastic problem and easily perform various statistic analysis on the output. Several numerical examples involving elementary mathematical functions and fluid mechanics problems are considered to illustrate the proposed method. The cases examined show that the method provides accurate results for stochastic dimensionality as high as 500 even with large-input variability. The efficiency of the proposed method is examined by comparing with Monte Carlo (MC) simulation.

3. A two-dimensional hydrodynamic model of a tidal estuary

USGS Publications Warehouse

Walters, Roy A.; Cheng, Ralph T.

1979-01-01

A finite element model is described which is used in the computation of tidal currents in an estuary. This numerical model is patterned after an existing algorithm and has been carefully tested in rectangular and curve-sided channels with constant and variable depth. One of the common uncertainties in this class of two-dimensional hydrodynamic models is the treatment of the lateral boundary conditions. Special attention is paid specifically to addressing this problem. To maintain continuity within the domain of interest, ‘smooth’ curve-sided elements must be used at all shoreline boundaries. The present model uses triangular, isoparametric elements with quadratic basis functions for the two velocity components and a linear basis function for water surface elevation. An implicit time integration is used and the model is unconditionally stable. The resultant governing equations are nonlinear owing to the advective and the bottom friction terms and are solved iteratively at each time step by the Newton-Raphson method. Model test runs have been made in the southern portion of San Francisco Bay, California (South Bay) as well as in the Bay west of Carquinez Strait. Owing to the complex bathymetry, the hydrodynamic characteristics of the Bay system are dictated by the generally shallow basins which contain deep, relict river channels. Great care must be exercised to ensure that the conservation equations remain locally as well as globally accurate. Simulations have been made over several representative tidal cycles using this finite element model, and the results compare favourably with existing data. In particular, the standing wave in South Bay and the progressive wave in the northern reach are well represented.

4. Current status of one- and two-dimensional numerical models: Successes and limitations

NASA Technical Reports Server (NTRS)

Schwartz, R. J.; Gray, J. L.; Lundstrom, M. S.

1985-01-01

The capabilities of one and two-dimensional numerical solar cell modeling programs (SCAP1D and SCAP2D) are described. The occasions when a two-dimensional model is required are discussed. The application of the models to design, analysis, and prediction are presented along with a discussion of problem areas for solar cell modeling.

5. A Novel Medical Freehand Sketch 3D Model Retrieval Method by Dimensionality Reduction and Feature Vector Transformation.

PubMed

Jing, Zhang; Sheng, Kang Bao

2015-01-01

To assist physicians to quickly find the required 3D model from the mass medical model, we propose a novel retrieval method, called DRFVT, which combines the characteristics of dimensionality reduction (DR) and feature vector transformation (FVT) method. The DR method reduces the dimensionality of feature vector; only the top M low frequency Discrete Fourier Transform coefficients are retained. The FVT method does the transformation of the original feature vector and generates a new feature vector to solve the problem of noise sensitivity. The experiment results demonstrate that the DRFVT method achieves more effective and efficient retrieval results than other proposed methods.

6. A Novel Medical Freehand Sketch 3D Model Retrieval Method by Dimensionality Reduction and Feature Vector Transformation

PubMed Central

Jing, Zhang; Sheng, Kang Bao

2016-01-01

To assist physicians to quickly find the required 3D model from the mass medical model, we propose a novel retrieval method, called DRFVT, which combines the characteristics of dimensionality reduction (DR) and feature vector transformation (FVT) method. The DR method reduces the dimensionality of feature vector; only the top M low frequency Discrete Fourier Transform coefficients are retained. The FVT method does the transformation of the original feature vector and generates a new feature vector to solve the problem of noise sensitivity. The experiment results demonstrate that the DRFVT method achieves more effective and efficient retrieval results than other proposed methods. PMID:27293478

7. Downhole-electrode resistivity interpretation with three-dimensional models

SciTech Connect

Newkirk, D.J.

1982-06-01

Using an integral equation numerical solution, the theoretical results for (1) the potential, (2) the apparent resistivity calculated from the total horizontal electric field, (3) the apparent resistivity calculated from the potential due to different three-dimensional bodies in plan and cross-section views have been computed. The transmitter consists of a remote electrode and a dowhole electrode embedded in the body or located near the body. For hole-to-surface work, the potential offers little information about the parameters of a deep body. The apparent resistivity from the total electric field, with its distinctive patterns, best resolves the width, length, and dip of the model, while the apparent resistivity from the potential is more difficult to interpret. The cross-section views, for analysis of hole-to-hole surveys, theoretically define the body for the potential and the apparent resistivity derived from the potential, but their use in practice is limited.

8. Three dimensional CAD model of the Ignitor machine

Orlandi, S.; Zanaboni, P.; Macco, A.; Sioli, V.; Risso, E.

1998-11-01

defind The final, global product of all the structural and thermomechanical design activities is a complete three dimensional CAD (AutoCAD and Intergraph Design Review) model of the IGNITOR machine. With this powerful tool, any interface, modification, or upgrading of the machine design is managed as an integrated part of the general effort aimed at the construction of the Ignitor facility. ind The activities that are underway, to complete the design of the core of the experiment and that will be described, concern the following: ind - the cryogenic cooling system, ind - the radial press, the center post, the mechanical supports (legs) of the entire machine, ind - the inner mechanical supports of major components such as the plasma chamber and the outer poloidal field coils.

9. Computational Model of Three Dimensional Elastic Wing Driven by Muscles

Wang, Z. Jane; Cowen, Nathaniel; Peskin, Charles S.; Childress, Stephen W.

2003-11-01

The flapping wing motion observed in nature results from couplings of muscles, flexible wing structures, and unsteady flows. Previously we have studied the unsteady flows and forces of a rigid two dimensional wing undergoing prescribed motion similar to kinematics observed in insects, as a means of understanding basic unsteady aerodynamic mechanisms. In this talk, we describe our recent progress in constructing a more realistic model insect, which consists of a pair of elastic wings immersed in fluids, and is driven by periodically contracting 'muscles'. A natural computational framework for such a system is the immersed boundary method, which is used here. We present simulations of flapping flight at Reynolds number 10^2, in the same range as that of fruitflies and butterflies.

10. Current fluctuations in a two dimensional model of heat conduction

Pérez-Espigares, Carlos; Garrido, Pedro L.; Hurtado, Pablo I.

2011-03-01

In this work we study numerically and analytically current fluctuations in the two-dimensional Kipnis-Marchioro-Presutti (KMP) model of heat conduction. For that purpose, we use a recently introduced algorithm which allows the direct evaluation of large deviations functions. We compare our results with predictions based on the Hydrodynamic Fluctuation Theory (HFT) of Bertini and coworkers, finding very good agreement in a wide interval of current fluctuations. We also verify the existence of a well-defined temperature profile associated to a given current fluctuation which depends exclusively on the magnitude of the current vector, not on its orientation. This confirms the recently introduced Isometric Fluctuation Relation (IFR), which results from the time-reversibility of the dynamics, and includes as a particular instance the Gallavotti-Cohen fluctuation theorem in this context but adds a completely new perspective on the high level of symmetry imposed by timereversibility on the statistics of nonequilibrium fluctuations.

11. Determination of effective loss factors in reduced SEA models

Chimeno Manguán, M.; Fernández de las Heras, M. J.; Roibás Millán, E.; Simón Hidalgo, F.

2017-01-01

The definition of Statistical Energy Analysis (SEA) models for large complex structures is highly conditioned by the classification of the structure elements into a set of coupled subsystems and the subsequent determination of the loss factors representing both the internal damping and the coupling between subsystems. The accurate definition of the complete system can lead to excessively large models as the size and complexity increases. This fact can also rise practical issues for the experimental determination of the loss factors. This work presents a formulation of reduced SEA models for incomplete systems defined by a set of effective loss factors. This reduced SEA model provides a feasible number of subsystems for the application of the Power Injection Method (PIM). For structures of high complexity, their components accessibility can be restricted, for instance internal equipments or panels. For these cases the use of PIM to carry out an experimental SEA analysis is not possible. New methods are presented for this case in combination with the reduced SEA models. These methods allow defining some of the model loss factors that could not be obtained through PIM. The methods are validated with a numerical analysis case and they are also applied to an actual spacecraft structure with accessibility restrictions: a solar wing in folded configuration.

12. Reduced-order models of the coagulation cascade

Hansen, Kirk B.; Shadden, Shawn C.

2015-11-01

Previous models of flow-mediated thrombogenesis have generally included the transport and reaction of dozens of biochemical species involved in the coagulation cascade. Researchers have shown, however, that thrombin generation curves can be accurately reproduced by a significantly smaller system of reactions. These reduced-order models are based on the system of ordinary differential equations representative of a well-mixed system, however, not the system of advection-diffusion-reaction equations required to model the flow-mediated case. Additionally, they focus solely on reproducing the thrombin generation curve, although accurate representation of certain intermediate species may be required to model additional aspects of clot formation, e.g. interactions with activated and non-activated platelets. In this work, we develop a method to reduce the order of a coagulation model through optimization techniques. The results of this reduced-order model are then compared to those of the full system in several representative cardiovascular flows. This work was supported by NSF grant 1354541, the NSF GRFP, and NIH grant HL108272.

13. Robust simulation of buckled structures using reduced order modeling

Wiebe, R.; Perez, R. A.; Spottswood, S. M.

2016-09-01

Lightweight metallic structures are a mainstay in aerospace engineering. For these structures, stability, rather than strength, is often the critical limit state in design. For example, buckling of panels and stiffeners may occur during emergency high-g maneuvers, while in supersonic and hypersonic aircraft, it may be induced by thermal stresses. The longstanding solution to such challenges was to increase the sizing of the structural members, which is counter to the ever present need to minimize weight for reasons of efficiency and performance. In this work we present some recent results in the area of reduced order modeling of post- buckled thin beams. A thorough parametric study of the response of a beam to changing harmonic loading parameters, which is useful in exposing complex phenomena and exercising numerical models, is presented. Two error metrics that use but require no time stepping of a (computationally expensive) truth model are also introduced. The error metrics are applied to several interesting forcing parameter cases identified from the parametric study and are shown to yield useful information about the quality of a candidate reduced order model. Parametric studies, especially when considering forcing and structural geometry parameters, coupled environments, and uncertainties would be computationally intractable with finite element models. The goal is to make rapid simulation of complex nonlinear dynamic behavior possible for distributed systems via fast and accurate reduced order models. This ability is crucial in allowing designers to rigorously probe the robustness of their designs to account for variations in loading, structural imperfections, and other uncertainties.

14. Insight into the numerical challenges of implementing 2-dimensional SOA models in atmospheric chemical transport models

Napier, W. J.; Ensberg, J. J.; Seinfeld, J. H.

2014-10-01

The new generation of secondary organic aerosol (SOA) models that represent gas- and particle-phase chemistry and thermodynamic partitioning using discrete two-dimensional grids (e.g. SOM, 2D-VBS) cannot be efficiently implemented into three-dimensional atmospheric chemical transport models (CTMs) due to the large number of bins (tracers) required. In this study, we introduce a novel mathematical framework, termed the Oxidation State/Volatility Moment Method, that is designed to address these computational burdens so as to allow the new generation of SOA models to be implemented into CTMs. This is accomplished by mapping the two-dimensional grids onto probability distributions that conserve carbon and oxygen mass. Assessment of the Moment Method strengths (speed, carbon and oxygen conservation) and weaknesses (numerical drift) provide valuable insight that can guide future development of SOA modules for atmospheric CTMs.

15. Rapid Analysis Model: Reducing Analysis Time without Sacrificing Quality.

ERIC Educational Resources Information Center

Lee, William W.; Owens, Diana

2001-01-01

Discusses the performance technology design process and the fact that the analysis phase is often being eliminated to speed up the process. Proposes a rapid analysis model that reduces time needed for analysis and still ensures more successful value-added solutions that focus on customer satisfaction. (LRW)

16. Intraspecific differences in bacterial responses to modelled reduced gravity

NASA Technical Reports Server (NTRS)

Baker, P. W.; Leff, L. G.

2005-01-01

AIMS: Bacteria are important residents of water systems, including those of space stations which feature specific environmental conditions, such as lowered effects of gravity. The purpose of this study was to compare responses with modelled reduced gravity of space station, water system bacterial isolates with other isolates of the same species. METHODS AND RESULTS: Bacterial isolates, Stenotrophomonas paucimobilis and Acinetobacter radioresistens, originally recovered from the water supply aboard the International Space Station (ISS) were grown in nutrient broth under modelled reduced gravity. Their growth was compared with type strains S. paucimobilis ATCC 10829 and A. radioresistens ATCC 49000. Acinetobacter radioresistens ATCC 49000 and the two ISS isolates showed similar growth profiles under modelled reduced gravity compared with normal gravity, whereas S. paucimobilis ATCC 10829 was negatively affected by modelled reduced gravity. CONCLUSIONS: These results suggest that microgravity might have selected for bacteria that were able to thrive under this unusual condition. These responses, coupled with impacts of other features (such as radiation resistance and ability to persist under very oligotrophic conditions), may contribute to the success of these water system bacteria. SIGNIFICANCE AND IMPACT OF THE STUDY: Water quality is a significant factor in many environments including the ISS. Efforts to remove microbial contaminants are likely to be complicated by the features of these bacteria which allow them to persist under the extreme conditions of the systems.

17. Reduced-order flow modeling and geological parameterization for ensemble-based data assimilation

He, Jincong; Sarma, Pallav; Durlofsky, Louis J.

2013-06-01

Reduced-order modeling represents an attractive approach for accelerating computationally expensive reservoir simulation applications. In this paper, we introduce and apply such a methodology for data assimilation problems. The technique applied to provide flow simulation results, trajectory piecewise linearization (TPWL), has been used previously for production optimization problems, where it has provided large computational speedups. The TPWL model developed here represents simulation results for new geological realizations in terms of a linearization around previously simulated (training) cases. The high-dimensional representation of the states is projected into a low-dimensional subspace using proper orthogonal decomposition. The geological models are also represented in reduced terms using a Karhunen-Loève expansion of the log-transmissibility field. Thus, both the reservoir states and geological parameters are described very concisely. The reduced-order representation of flow and geology is appropriate for use with ensemble-based data assimilation procedures, and here it is incorporated into an ensemble Kalman filter (EnKF) framework to enrich the ensemble at a low cost. The method is able to reconstruct full-order states, which are required by EnKF, whenever necessary. The combined technique enables EnKF to be applied using many fewer high-fidelity reservoir simulations than would otherwise be required to avoid ensemble collapse. For two- and three-dimensional example cases, it is demonstrated that EnKF results using 50 high-fidelity simulations along with 150 TPWL simulations are much better than those using only 50 high-fidelity simulations (for which ensemble collapse is observed) and are, in fact, comparable to the results achieved using 200 high-fidelity simulations.

18. Reducing the dimensionality of grid based methods for electron-atom scattering calculations below ionization threshold

Benda, Jakub; Houfek, Karel

2017-04-01

For total energies below the ionization threshold it is possible to dramatically reduce the computational burden of the solution of the electron-atom scattering problem based on grid methods combined with the exterior complex scaling. As in the R-matrix method, the problem can be split into the inner and outer problem, where the outer problem considers only the energetically accessible asymptotic channels. The (N + 1)-electron inner problem is coupled to the one-electron outer problems for every channel, resulting in a matrix that scales only linearly with size of the outer grid.

19. Three dimensional numerical modeling of land subsidence in Shanghai

Ye, S.; Luo, Y.; Wu, J.; Teatini, P.; Wang, H.; Jiao, X.

2015-11-01

Shanghai city has been suffering land subsidence caused by overly exploitation of ground water since 1921, which is a serious problem for this coastal city with altitude of 2.2-4.8 m above mean sea level. The largest cumulative land subsidence amounted to 2.6 m in the downtown area. Measures to decrease the ground water exploitation, change the pumping aquifers, and increase aquifer artificial recharge have been used to mitigate land subsidence since 1961. It is necessary to develop a proper numerical model to simulate and predict land subsidence. In this study, a decoupled three-dimensional (3-D) finite element land subsidence model including a 3-D ground water flow model and a 3-D geo-mechanical model was developed to simulate the 3-D deformation of the aquifer systems in the center area of Shanghai. The area of downtown Shanghai is 660 km2, with 10 million inhabitants, dense high buildings, and 11 metro lines. The simulation spans the period from 1979 to 1995. Two different assumptions have been tested on the side boundary, i.e., precluding the three components of the displacement, or assuming a free-displacement condition. The distribution of calculated land subsidence and horizontal displacements in different aquifers was analyzed. The computed vertical displacement fitted well with the available observations. It has been verified that the two different assumptions on the lateral boundaries in the geo-mechanical model caused different results just limited on nodes close to boundary. The developed 3-D land subsidence model is reasonable and can be used to simulate and predict 3-D movement of aquifer systems in the center area of Shanghai, which could provide scientific support to local government in controlling land subsidence and differential movements of the land surface.

20. Interpolation-based reduced-order modelling for steady transonic flows via manifold learning

Franz, T.; Zimmermann, R.; Görtz, S.; Karcher, N.

2014-03-01

This paper presents a parametric reduced-order model (ROM) based on manifold learning (ML) for use in steady transonic aerodynamic applications. The main objective of this work is to derive an efficient ROM that exploits the low-dimensional nonlinear solution manifold to ensure an improved treatment of the nonlinearities involved in varying the inflow conditions to obtain an accurate prediction of shocks. The reduced-order representation of the data is derived using the Isomap ML method, which is applied to a set of sampled computational fluid dynamics (CFD) data. In order to develop a ROM that has the ability to predict approximate CFD solutions at untried parameter combinations, Isomap is coupled with an interpolation method to capture the variations in parameters like the angle of attack or the Mach number. Furthermore, an approximate local inverse mapping from the reduced-order representation to the full CFD solution space is introduced. The proposed ROM, called Isomap+I, is applied to the two-dimensional NACA 64A010 airfoil and to the 3D LANN wing. The results are compared to those obtained by proper orthogonal decomposition plus interpolation (POD+I) and to the full-order CFD model.

1. One-dimensional cold cap model for melters with bubblers

DOE PAGES

Pokorny, Richard; Hilliard, Zachary J.; Dixon, Derek R.; ...

2015-07-28

The rate of glass production during vitrification in an all-electrical melter greatly impacts the cost and schedule of nuclear waste treatment and immobilization. The feed is charged to the melter on the top of the molten glass, where it forms a layer of reacting and melting material, called the cold cap. During the final stages of the batch-to-glass conversion process, gases evolved from reactions produce primary foam, the growth and collapse of which controls the glass production rate. The mathematical model of the cold cap was revised to include functional representation of primary foam behavior and to account for themore » dry cold cap surface. The melting rate is computed as a response to the dependence of the primary foam collapse temperature on the heating rate and melter operating conditions, including the effect of bubbling on the cold cap bottom and top surface temperatures. The simulation results are in good agreement with experimental data from laboratory-scale and pilot-scale melter studies. Lastly, the cold cap model will become part of the full three-dimensional mathematical model of the waste glass melter.« less

2. Two-dimensional CFD modeling of wave rotor flow dynamics

NASA Technical Reports Server (NTRS)

Welch, Gerard E.; Chima, Rodrick V.

1994-01-01

A two-dimensional Navier-Stokes solver developed for detailed study of wave rotor flow dynamics is described. The CFD model is helping characterize important loss mechanisms within the wave rotor. The wave rotor stationary ports and the moving rotor passages are resolved on multiple computational grid blocks. The finite-volume form of the thin-layer Navier-Stokes equations with laminar viscosity are integrated in time using a four-stage Runge-Kutta scheme. Roe's approximate Riemann solution scheme or the computationally less expensive advection upstream splitting method (AUSM) flux-splitting scheme is used to effect upwind-differencing of the inviscid flux terms, using cell interface primitive variables set by MUSCL-type interpolation. The diffusion terms are central-differenced. The solver is validated using a steady shock/laminar boundary layer interaction problem and an unsteady, inviscid wave rotor passage gradual opening problem. A model inlet port/passage charging problem is simulated and key features of the unsteady wave rotor flow field are identified. Lastly, the medium pressure inlet port and high pressure outlet port portion of the NASA Lewis Research Center experimental divider cycle is simulated and computed results are compared with experimental measurements. The model accurately predicts the wave timing within the rotor passages and the distribution of flow variables in the stationary inlet port region.

3. Spatiotemporal evolution in a (2+1)-dimensional chemotaxis model

Banerjee, Santo; Misra, Amar P.; Rondoni, L.

2012-01-01

Simulations are performed to investigate the nonlinear dynamics of a (2+1)-dimensional chemotaxis model of Keller-Segel (KS) type, with a logistic growth term. Because of its ability to display auto-aggregation, the KS model has been widely used to simulate self-organization in many biological systems. We show that the corresponding dynamics may lead to steady-states, to divergencies in a finite time as well as to the formation of spatiotemporal irregular patterns. The latter, in particular, appears to be chaotic in part of the range of bounded solutions, as demonstrated by the analysis of wavelet power spectra. Steady-states are achieved with sufficiently large values of the chemotactic coefficient (χ) and/or with growth rates r below a critical value rc. For r>rc, the solutions of the differential equations of the model diverge in a finite time. We also report on the pattern formation regime, for different values of χ, r and of the diffusion coefficient D.

4. One-dimensional cold cap model for melters with bubblers

SciTech Connect

Pokorny, Richard; Hilliard, Zachary J.; Dixon, Derek R.; Schweiger, Michael J.; Guillen, Donna P.; Kruger, Albert A.; Hrma, Pavel

2015-07-28

The rate of glass production during vitrification in an all-electrical melter greatly impacts the cost and schedule of nuclear waste treatment and immobilization. The feed is charged to the melter on the top of the molten glass, where it forms a layer of reacting and melting material, called the cold cap. During the final stages of the batch-to-glass conversion process, gases evolved from reactions produce primary foam, the growth and collapse of which controls the glass production rate. The mathematical model of the cold cap was revised to include functional representation of primary foam behavior and to account for the dry cold cap surface. The melting rate is computed as a response to the dependence of the primary foam collapse temperature on the heating rate and melter operating conditions, including the effect of bubbling on the cold cap bottom and top surface temperatures. The simulation results are in good agreement with experimental data from laboratory-scale and pilot-scale melter studies. Lastly, the cold cap model will become part of the full three-dimensional mathematical model of the waste glass melter.

5. Theme section: Multi-dimensional modelling, analysis and visualization

Guilbert, Éric; Çöltekin, Arzu; Castro, Francesc Antón; Pettit, Chris

2016-07-01

Spatial data are now collected and processed in larger amounts, and used by larger populations than ever before. While most geospatial data have traditionally been recorded as two-dimensional data, the evolution of data collection methods and user demands have led to data beyond the two dimensions describing complex multidimensional phenomena. An example of the relevance of multidimensional modelling is seen with the development of urban modelling where several dimensions have been added to the traditional 2D map representation (Sester et al., 2011). These include obviously the third spatial dimension (Biljecki et al., 2015) as well as the temporal, but also the scale dimension (Van Oosterom and Stoter, 2010) or, as mentioned by (Lu et al., 2016), multi-spectral and multi-sensor data. Such a view provides an organisation of multidimensional data around these different axes and it is time to explore each axis as the availability of unprecedented amounts of new data demands new solutions. The availability of such large amounts of data induces an acute need for developing new approaches to assist with their dissemination, visualisation, and analysis by end users. Several issues need to be considered in order to provide a meaningful representation and assist in data visualisation and mining, modelling and analysis; such as data structures allowing representation at different scales or in different contexts of thematic information.

6. Modeling three-dimensional propagation in a continental shelf environment.

PubMed

Ballard, Megan S

2012-03-01

An acoustic propagation model is applied to predict measurements of three-dimensional (3-D) effects recorded off the southeast coast of Florida. The measured signal is produced by a low frequency source that is towed north parallel to the shelf from a fixed receiving array. The acoustic data show the direct path arrival at the bearing of the tow ship and a second refracted path arrival as much as 30° inshore of the direct arrival. Notably, the refracted arrival has a received level more than 25 dB greater than that of the direct arrival. A geoacoustic model of the environment is created to explain the data. It is shown that the topography of the seafloor plays the largest role in controlling horizontal refraction effects, whereas the range-dependent sediment properties have the most influence on the received level. The modeling approach is based on a 3-D adiabatic mode technique in which the horizontal refraction equation is solved using a parabolic equation in Cartesian coordinates. A modal decomposition of the field provides insight into the variability in the arrival angle and received level of the measured signal.

7. Three-dimensional lattice Boltzmann model for electrodynamics.

PubMed

Mendoza, M; Muñoz, J D

2010-11-01

In this paper we introduce a three-dimensional Lattice-Boltzmann model that recovers in the continuous limit the Maxwell equations in materials. In order to build conservation equations with antisymmetric tensors, like the Faraday law, the model assigns four auxiliary vectors to each velocity vector. These auxiliary vectors, when combined with the distribution functions, give the electromagnetic fields. The evolution is driven by the usual Bhatnager-Gross-Krook (BGK) collision rule, but with a different form for the equilibrium distribution functions. This lattice Bhatnager-Gross-Krook (LBGK) model allows us to consider for both dielectrics and conductors with realistic parameters, and therefore it is adequate to simulate the most diverse electromagnetic problems, like the propagation of electromagnetic waves (both in dielectric media and in waveguides), the skin effect, the radiation pattern of a small dipole antenna and the natural frequencies of a resonant cavity, all with 2% accuracy. Actually, it shows to be one order of magnitude faster than the original Finite-difference time-domain (FDTD) formulation by Yee to reach the same accuracy. It is, therefore, a valuable alternative to simulate electromagnetic fields and opens lattice Boltzmann for a broad spectrum of new applications in electrodynamics.

8. Three-Dimensional Oil Dispersion Model in Campos basin, Brazil.

PubMed

Oliveira, Bernardo Lopes Almeida de; Netto, Theodoro Antoun; Assad, Luiz Paulo de Freitas

2017-02-22

This paper presents the physical and mathematical formulation of a three-dimensional oil dispersion model that calculates the trajectory from the seafloor to the sea surface, its assumptions and constraints. It was developed by researchers that are familiar with oil spill dispersion and mathematical analysis. Oil dispersion is calculated through two computational routines. The first calculates the vertical dispersion along the water column and resamples the droplets when the oil reaches the surface. The second calculates the surface displacement of the spill. This model is based on the Eulerian Approach, and it uses numerical solution schemes in time and in space to solve the equation for advective-diffusive transport. A case study based on an actual accident that happened in the Campos Basin, in Rio de Janeiro State, considering the instant spill of 1.000 m(3) was used to evaluate the proposed model. After calculating the vertical transport, it was estimated that the area covered by the oil spill on the surface was about 35.685 m². After calculating the dispersion at the surface, the plume area was estimated as 20% of the initial area, resulting in a final area of 28.548 m².

9. Three-dimensional modeling of ozone and particulate matter: Model improvement and evaluation

Liu, Ping

Accuracy and computationally-efficiency in representing secondary organic aerosol (SOA) is essential in an air quality model because SOA constitutes a sizeable fraction of fine particulate mater (PM2.5), which impacts human health, visibility, and climate. Two aerosol modules: Model of Aerosol Dynamics, Reaction, Ionization, and Dissolution 1 and 2 (MADRID 1 and 2) have been incorporated into EPA's Models-3 Community Multiscale Air Quality (CMAQ) modeling system to simulate SOA. MADRID 2 represents a detailed treatment for SOA formation, but it is computationally more expensive than MADRID 1. In this thesis work, a zero-dimensional CMAQ with MADRID 2 (CMAQ-MADRID 2) is applied to explore various methods for improving the computational efficiency of the SOA module. A combination of several speed-up methods used in MADRID 2_FAST can significantly reduce the CPU cost by 61 to 97% (speedup by factors of 2.5-30) with percentage deviations within +/-15% from the benchmark under four representative ambient conditions and conditions with typical ranges of temperatures and relative humidities. CMAQ-MADRID 2 and CMAQ-MADRID 2_FAST are evaluated along with CMAQ and CMAQ-MADRID 1 using the June 12-28, 1999 episode. CMAQ shows a generally good performance in simulating ozone (O3) and PM2.5. The O3-NOx-VOC chemical regimes are identified using the integrated reaction rates (IRRs) analysis. The integrated process rates (IPRs) analysis and correlation analysis show that, aerosol processes, cloud processes, dry deposition, and emissions are correlated or large contributors to the model biases for PM2.5 and its components. These results are used to guide the design of sensitivity simulations, focusing on uncertainties in the dry deposition velocities of particulate matter (PM) species and precursors, the emissions of PM precursors, and the cloud processes and gas-phase chemistry of sulfate (SO42-) formation. Adjusting the most influential processes/factors (i.e., emissions of

10. Verification and transfer of thermal pollution model. Volume 5: Verification of 2-dimensional numerical model

NASA Technical Reports Server (NTRS)

Lee, S. S.; Sengupta, S.; Nwadike, E. V.

1982-01-01

The six-volume report: describes the theory of a three dimensional (3-D) mathematical thermal discharge model and a related one dimensional (1-D) model, includes model verification at two sites, and provides a separate user's manual for each model. The 3-D model has two forms: free surface and rigid lid. The former, verified at Anclote Anchorate (FL), allows a free air/water interface and is suited for significant surface wave heights compared to mean water depth; e.g., estuaries and coastal regions. The latter, verified at Lake Keowee (SC), is suited for small surface wave heights compared to depth (e.g., natural or man-made inland lakes) because surface elevation has been removed as a parameter. These models allow computation of time dependent velocity and temperature fields for given initial conditions and time-varying boundary conditions.

11. Validating two-dimensional leadership models on three-dimensionally structured fish schools

PubMed Central

Nagy, Máté; Holbrook, Robert I.; Biro, Dora; Burt de Perera, Theresa

2017-01-01

Identifying leader–follower interactions is crucial for understanding how a group decides where or when to move, and how this information is transferred between members. Although many animal groups have a three-dimensional structure, previous studies investigating leader–follower interactions have often ignored vertical information. This raises the question of whether commonly used two-dimensional leader–follower analyses can be used justifiably on groups that interact in three dimensions. To address this, we quantified the individual movements of banded tetra fish (Astyanax mexicanus) within shoals by computing the three-dimensional trajectories of all individuals using a stereo-camera technique. We used these data firstly to identify and compare leader–follower interactions in two and three dimensions, and secondly to analyse leadership with respect to an individual's spatial position in three dimensions. We show that for 95% of all pairwise interactions leadership identified through two-dimensional analysis matches that identified through three-dimensional analysis, and we reveal that fish attend to the same shoalmates for vertical information as they do for horizontal information. Our results therefore highlight that three-dimensional analyses are not always required to identify leader–follower relationships in species that move freely in three dimensions. We discuss our results in terms of the importance of taking species' sensory capacities into account when studying interaction networks within groups. PMID:28280582

12. Validating two-dimensional leadership models on three-dimensionally structured fish schools.

PubMed

Watts, Isobel; Nagy, Máté; Holbrook, Robert I; Biro, Dora; Burt de Perera, Theresa

2017-01-01

Identifying leader-follower interactions is crucial for understanding how a group decides where or when to move, and how this information is transferred between members. Although many animal groups have a three-dimensional structure, previous studies investigating leader-follower interactions have often ignored vertical information. This raises the question of whether commonly used two-dimensional leader-follower analyses can be used justifiably on groups that interact in three dimensions. To address this, we quantified the individual movements of banded tetra fish (Astyanax mexicanus) within shoals by computing the three-dimensional trajectories of all individuals using a stereo-camera technique. We used these data firstly to identify and compare leader-follower interactions in two and three dimensions, and secondly to analyse leadership with respect to an individual's spatial position in three dimensions. We show that for 95% of all pairwise interactions leadership identified through two-dimensional analysis matches that identified through three-dimensional analysis, and we reveal that fish attend to the same shoalmates for vertical information as they do for horizontal information. Our results therefore highlight that three-dimensional analyses are not always required to identify leader-follower relationships in species that move freely in three dimensions. We discuss our results in terms of the importance of taking species' sensory capacities into account when studying interaction networks within groups.

13. Roughness distribution of multiple hit and long surface diffusion length noise reduced discrete growth models

Disrattakit, P.; Chanphana, R.; Chatraphorn, P.

2016-11-01

Conventionally, the universality class of a discrete growth model is identified via the scaling of interface width. This method requires large-scale simulations to minimize finite-size effects on the results. The multiple hit noise reduction techniques (m > 1 NRT) and the long surface diffusion length noise reduction techniques (ℓ > 1 NRT) have been used to promote the asymptotic behaviors of the growth models. Lately, an alternative method involving comparison of roughness distribution in the steady state has been proposed. In this work, the roughness distribution of the (2 +1)-dimensional Das Sarma-Tamborenea (DT), Wolf-Villain (WV), and Larger Curvature (LC) models, with and without NRTs, are calculated in order to investigate effects of the NRTs on the roughness distribution. Additionally, effective growth exponents of the noise reduced (2 +1)-dimensional DT, WV and LC models are also calculated. Our results indicate that the NRTs affect the interface width both in the growth and the saturation regimes. In the steady state, the NRTs do not seem to have any impact on the roughness distribution of the DT model, but it significantly changes the roughness distribution of the WV and LC models to the normal distribution curves.

14. A two-dimensional analytical subthreshold behavior model for junctionless dual-material cylindrical surrounding-gate MOSFETs

Li, Cong; Zhuang, Yi-Qi; Zhang, Li; Jin, Gang

2014-03-01

A two-dimensional analytical subthreshold behavior model for junctionless dual-material cylindrical surrounding-gate (JLDMCSG) metal-oxide-semiconductor field-effect transistors (MOSFETs) is proposed. It is derived by solving the two-dimensional Poisson's equation in two continuous cylindrical regions with any simplifying assumption. Using this analytical model, the subthreshold characteristics of JLDMCSG MOSFETs are investigated in terms of channel electrostatic potential, horizontal electric field, and subthreshold current. Compared to junctionless single-material cylindrical surrounding-gate MOSFETs, JLDMCSG MOSFETs can effectively suppress short-channel effects and simultaneously improve carrier transport efficiency. It is found that the subthreshold current of JLDMCSG MOSFETs can be significantly reduced by adopting both a thin oxide and thin silicon channel. The accuracy of the analytical model is verified by its good agreement with the three-dimensional numerical simulator ISE TCAD.

15. Two-dimensional TaC nanosheets on a reduced graphene oxide hybrid as an efficient and stable electrocatalyst for water splitting.

PubMed

He, Chunyong; Tao, Juzhou

2016-07-07

A novel highly active and stable HER catalyst containing two-dimensional TaC nanosheets hybridized with reduced graphene oxide (2D TaC-RGO) was prepared as an efficient and stable hydrogen evolution reaction catalyst.

16. Simulational Studies of a 2-DIMENSIONAL Burridge - Model for Earthquakes

Ross, John Bernard

1993-01-01

A two-dimensional cellular automaton version of the Burridge-Knopoff (BK) model for earthquakes is studied. The model consists of a lattice of blocks connected by springs, subject to static friction and driven at a rate v by an externally applied force. A block ruptures provided that its total stress matches or exceeds static friction. The distance it moves is proportional to the total stress, alpha of which it releases to each of its neighbors and 1 - qalpha<=aves the system, where q is the number of neighbors. The BK model with nearest neighbor (q = 4) and long range (q = 24) interactions is simulated for spatially uniform and random static friction on lattices with periodic, open, closed, and fixed boundary conditions. In the nearest neighbor model, the system appears to have a spinodal critical point at v = v_{c} in all cases except for closed boundaries and uniform thresholds, where the system appears to be self-organized critical. The dynamics of the model is always periodic or quasiperiodic for non-closed boundaries and uniform thresholds. The stress is "quantized" in multiples of the loader force in this case. A mean field theory is presented from which v _{c} and the dominant period of oscillation is derived, which agree well with the data. v_{c} varies inversely with the number of neighbors to which each blocks is attached and, as a result, goes to zero as the range of the springs goes to infinity. This is consistent with the behavior of a spinodal critical point as the range of interactions goes to infinity. The quasistatic limit of tectonic loading is thus recovered.

17. A regional adaptive and assimilative three-dimensional ionospheric model

Sabbagh, Dario; Scotto, Carlo; Sgrigna, Vittorio

2016-03-01

A regional adaptive and assimilative three-dimensional (3D) ionospheric model is proposed. It is able to ingest real-time data from different ionosondes, providing the ionospheric bottomside plasma frequency fp over the Italian area. The model is constructed on the basis of empirical values for a set of ionospheric parameters Pi[base] over the considered region, some of which have an assigned variation ΔPi. The values for the ionospheric parameters actually observed at a given time at a given site will thus be Pi = Pi[base] + ΔPi. These Pi values are used as input for an electron density N(h) profiler. The latter is derived from the Advanced Ionospheric Profiler (AIP), which is software used by Autoscala as part of the process of automatic inversion of ionogram traces. The 3D model ingests ionosonde data by minimizing the root-mean-square deviation between the observed and modeled values of fp(h) profiles obtained from the associated N(h) values at the points where observations are available. The ΔPi values are obtained from this minimization procedure. The 3D model is tested using data collected at the ionospheric stations of Rome (41.8N, 12.5E) and Gibilmanna (37.9N, 14.0E), and then comparing the results against data from the ionospheric station of San Vito dei Normanni (40.6N, 18.0E). The software developed is able to produce maps of the critical frequencies foF2 and foF1, and of fp at a fixed altitude, with transverse and longitudinal cross-sections of the bottomside ionosphere in a color scale. fp(h) and associated simulated ordinary ionogram traces can easily be produced for any geographic location within the Italian region. fp values within the volume in question can also be provided.

18. Two-dimensional Rayleigh model of vapor bubble evolution

SciTech Connect

Amendt, P; Friedman, M; Glinsky, M; Gurewitz, E; London, R A; Strauss, M

1999-01-14

The understanding of vapor bubble generation in an aqueous tissue near a fiber tip has required advanced two dimensional (2D) hydrodynamic simulations. For 1D spherical bubble expansion a simplified and useful Rayleigh-type model can be applied. For 2D bubble evolution, such a model does not exist. The present work proposes a Rayleigh-type model for 2D bubble expansion that is faster and simpler than the 2D hydrodynamic simulations. The model is based on a flow potential representation of the hydrodynamic motion controlled by a Laplace equation and a moving boundary condition. We show that the 1D Rayleigh equation is a specific case of our model. The Laplace equation is solved for each time step by a finite element solver using a triangulation of the outside bubble region by a fast unstructured mesh generator. Two problems of vapor bubbles generated by short-pulse lasers near a fiber tip-are considered: (a) the outside region has no boundaries except the fiber, (b) the fiber and the bubble are confined in a long channel, which simulates a fiber in a vessel wall. Our simulations for problems of type (a) include features of bubble evolution as seen in experiments, including a collapse away from the fiber tip. A different behavior was obtained for problems of type (b) when the channel boundary is close to the fiber. In this case the bubble's expansion and collapse are both extremely slow in the direction normal to this boundary and distortion of the bubble is observed.

19. Three-dimensional numerical modeling of indium phosphide Point-Contact Solar Cells

NASA Technical Reports Server (NTRS)

Clark, Ralph O.

1992-01-01

The Point-Contact Solar Cell (PCSC) geometry has proven very effective for silicon cells. To date, it has not been implemented in III-V materials. In addition, modeling such a geometry is very difficult because of its three-dimensional nature. We have developed a three-dimensional finite element modeling code (FIESTA ROC). In this paper, we present results from a three-dimensional modeling study of InP point-contact solar cells.

20. Design Recommendations for the Smart Weapons Operability Enhancement Three-Dimensional Thermal Model.

DTIC Science & Technology

1991-11-26

PAGES 44 BTI /SWOE, 3-D Thermal models 16. PRICE CODE 17. SECURITY CLASSIFICATION 18. SECURITY CLASSIFICATION 19. SECURITY CLASSIFICATION 20. UMITATION...Enhancement Three-Dimensional Thermal Model 1 INTRODUCTION 1.1 Background and Purpose of Research The Balanced Technology Initiative ( BTI ) on Smart...dimensional (1-D) thermal models was performed’ for the BTI /SWOE ! Balick, LK., Hummel, J.R., Smith, J.A., and Kimes, D.S. (1990) "One Dimensional

1. Wightman function and vacuum fluctuations in higher dimensional brane models

SciTech Connect

Saharian, Aram A.

2006-02-15

The Wightman function and the vacuum expectation value of the field square are evaluated for a massive scalar field with a general curvature coupling parameter subject to Robin boundary conditions on two codimension-one parallel branes located on a (D+1)-dimensional background spacetime AdS{sub D{sub 1}}{sub +1}x{sigma} with a warped internal space {sigma}. The general case of different Robin coefficients on separate branes is considered. The application of the generalized Abel-Plana formula for the series over zeros of combinations of cylinder functions allows us to manifestly extract the part due to the bulk without boundaries. Unlike the purely anti-de Sitter (AdS) bulk, the vacuum expectation value of the field square induced by a single brane, in addition to the distance from the brane, depends also on the position of the brane in the bulk. The brane induced part in this expectation value vanishes when the brane position tends to the AdS horizon or the AdS boundary. The asymptotic behavior of the vacuum densities near the branes and at large distances is investigated. The contribution of Kaluza-Klein modes along {sigma} is discussed in various limiting cases. In the limit when the curvature radius for the AdS spacetime tends to infinity, we derive the results for two parallel Robin plates on the background spacetime R{sup (D{sub 1},1)}x{sigma}. For strong gravitational fields corresponding to large values of the AdS energy scale, both the single brane and interference parts of the expectation values integrated over the internal space are exponentially suppressed. As an example the case {sigma}=S{sup 1} is considered, corresponding to the AdS{sub D+1} bulk with one compactified dimension. An application to the higher dimensional generalization of the Randall-Sundrum brane model with arbitrary mass terms on the branes is discussed.

2. Moiré reducing two-dimensional diffractive optical low-pass filter made from molded plastic

Sakohira, Yosuke; Yamamoto, Kazuya; Okada, Makoto

2016-03-01

A two dimensional sinusoid diffraction grating is developed for a moiré-reducing low-pass filter. Typical display units have image pixels arranged systematically in two dimensions, with non-illuminating regions between the image pixels. Using a conventional lens to view this display, the image pixels and the region between the pixels are both magnified, and the resulting image is unpleasant to the human eye, especially with color displays, called the screen door effect. This pixel problem is typically solved with a low-pass filter using a diffraction grating. However, depending on the period of the diffraction grating compared to the period of the image pixels, moiré can be seen. In recent years, organic electroluminescence displays with a small fill factor are growing popular, but such displays are usually more prone to the screen door effect and moiré. With conventional optical low-pass filters, only the pixel pitch in the vertical and horizontal directions are taken into account, but this is insufficient with small fill-factor pixels, and consideration for various diagonal periods is needed. A two dimensional sinusoid structure diffraction grating is developed for a moiré-reducing low-pass filter. The angle of the grating with the image pixel arrangement, the distance between the display and the grating, the grating depth, and the grating period are all chosen appropriately, and take into account multiple non-adjacent diagonal image pixel periods for all colors, consequently reducing moiré and the screen door effect. We present the calculations and evaluation results from plastic samples made by lithography tooled molds.

3. Review of simplified Pseudo-two-Dimensional models of lithium-ion batteries

Jokar, Ali; Rajabloo, Barzin; Désilets, Martin; Lacroix, Marcel

2016-09-01

Over the last decade, many efforts have been deployed to develop models for the prediction, the control, the optimization and the parameter estimation of Lithium-ion (Li-ion) batteries. It appears that the most successful electrochemical-based model for Li-ion battery is the Pseudo-two-Dimensional model (P2D). Due to the fact that the governing equations are complex, this model cannot be used in real-time applications like Battery Management Systems (BMSs). To remedy the situation, several investigations have been carried out to simplify the P2D model. Mathematical and physical techniques are employed to reduce the order of magnitude of the P2D governing equations. The present paper is a review of the studies on the modeling of Li-ion batteries with simplified P2D models. The assumptions on which these models rest are stated, the calculation methods are examined, the advantages and the drawbacks of the models are discussed and their applications are presented. Suggestions for overcoming the shortcomings of the models are made. Challenges and future directions in the modeling of Li-ion batteries are also discussed.

4. Reducing equifinality of hydrological models by integrating Functional Streamflow Disaggregation

Lüdtke, Stefan; Apel, Heiko; Nied, Manuela; Carl, Peter; Merz, Bruno

2014-05-01

A universal problem of the calibration of hydrological models is the equifinality of different parameter sets derived from the calibration of models against total runoff values. This is an intrinsic problem stemming from the quality of the calibration data and the simplified process representation by the model. However, discharge data contains additional information which can be extracted by signal processing methods. An analysis specifically developed for the disaggregation of runoff time series into flow components is the Functional Streamflow Disaggregation (FSD; Carl & Behrendt, 2008). This method is used in the calibration of an implementation of the hydrological model SWIM in a medium sized watershed in Thailand. FSD is applied to disaggregate the discharge time series into three flow components which are interpreted as base flow, inter-flow and surface runoff. In addition to total runoff, the model is calibrated against these three components in a modified GLUE analysis, with the aim to identify structural model deficiencies, assess the internal process representation and to tackle equifinality. We developed a model dependent (MDA) approach calibrating the model runoff components against the FSD components, and a model independent (MIA) approach comparing the FSD of the model results and the FSD of calibration data. The results indicate, that the decomposition provides valuable information for the calibration. Particularly MDA highlights and discards a number of standard GLUE behavioural models underestimating the contribution of soil water to river discharge. Both, MDA and MIA yield to a reduction of the parameter ranges by a factor up to 3 in comparison to standard GLUE. Based on these results, we conclude that the developed calibration approach is able to reduce the equifinality of hydrological model parameterizations. The effect on the uncertainty of the model predictions is strongest by applying MDA and shows only minor reductions for MIA. Besides

5. Verification and transfer of thermal pollution model. Volume 6: User's manual for 1-dimensional numerical model

NASA Technical Reports Server (NTRS)

Lee, S. S.; Sengupta, S.; Nwadike, E. V.

1982-01-01

The six-volume report: describes the theory of a three dimensional (3-D) mathematical thermal discharge model and a related one dimensional (1-D) model, includes model verification at two sites, and provides a separate user's manual for each model. The 3-D model has two forms: free surface and rigid lid. The former, verified at Anclote Anchorage (FL), allows a free air/water interface and is suited for significant surface wave heights compared to mean water depth; e.g., estuaries and coastal regions. The latter, verified at Lake Keowee (SC), is suited for small surface wave heights compared to depth (e.g., natural or man-made inland lakes) because surface elevation has been removed as a parameter.

6. Chitosan Enriched Three-Dimensional Matrix Reduces Inflammatory and Catabolic Mediators Production by Human Chondrocytes

PubMed Central

Oprenyeszk, Frederic; Sanchez, Christelle; Dubuc, Jean-Emile; Maquet, Véronique; Henrist, Catherine; Compère, Philippe; Henrotin, Yves

2015-01-01

This in vitro study investigated the metabolism of human osteoarthritic (OA) chondrocytes encapsulated in a spherical matrix enriched of chitosan. Human OA chondrocytes were encapsulated and cultured for 28 days either in chitosan-alginate beads or in alginate beads. The beads were formed by slowly passing dropwise either the chitosan 0.6%–alginate 1.2% or the alginate 1.2% solution through a syringe into a 102 mM CaCl2 solution. Beads were analyzed histologically after 28 days. Interleukin (IL)-6 and -8, prostaglandin (PG) E2, matrix metalloproteinases (MMPs), hyaluronan and aggrecan were quantified directly in the culture supernatant by specific ELISA and nitric oxide (NO) by using a colorimetric method based on the Griess reaction. Hematoxylin and eosin staining showed that chitosan was homogeneously distributed through the matrix and was in direct contact with chondrocytes. The production of IL-6, IL-8 and MMP-3 by chondrocytes significantly decreased in chitosan-alginate beads compared to alginate beads. PGE2 and NO decreased also significantly but only during the first three days of culture. Hyaluronan and aggrecan production tended to increase in chitosan-alginate beads after 28 days of culture. Chitosan-alginate beads reduced the production of inflammatory and catabolic mediators by OA chondrocytes and tended to stimulate the synthesis of cartilage matrix components. These particular effects indicate that chitosan-alginate beads are an interesting scaffold for chondrocytes encapsulation before transplantation to repair cartilage defects. PMID:26020773

7. Model predictive control based on reduced order models applied to belt conveyor system.

PubMed

Chen, Wei; Li, Xin

2016-11-01

In the paper, a model predictive controller based on reduced order model is proposed to control belt conveyor system, which is an electro-mechanics complex system with long visco-elastic body. Firstly, in order to design low-degree controller, the balanced truncation method is used for belt conveyor model reduction. Secondly, MPC algorithm based on reduced order model for belt conveyor system is presented. Because of the error bound between the full-order model and reduced order model, two Kalman state estimators are applied in the control scheme to achieve better system performance. Finally, the simulation experiments are shown that balanced truncation method can significantly reduce the model order with high-accuracy and model predictive control based on reduced-model performs well in controlling the belt conveyor system.

8. Three-Dimensional Modeling of Quasi-Homologous Solar Jets

NASA Technical Reports Server (NTRS)

Pariat, E.; Antiochos, S. K.; DeVore, C. R.

2010-01-01

Recent solar observations (e.g., obtained with Hinode and STEREO) have revealed that coronal jets are a more frequent phenomenon than previously believed. This higher frequency results, in part, from the fact that jets exhibit a homologous behavior: successive jets recur at the same location with similar morphological features. We present the results of three-dimensional (31)) numerical simulations of our model for coronal jets. This study demonstrates the ability of the model to generate recurrent 3D untwisting quasi-homologous jets when a stress is constantly applied at the photospheric boundary. The homology results from the property of the 3D null-point system to relax to a state topologically similar to its initial configuration. In addition, we find two distinct regimes of reconnection in the simulations: an impulsive 3D mode involving a helical rotating current sheet that generates the jet, and a quasi-steady mode that occurs in a 2D-like current sheet located along the fan between the sheared spines. We argue that these different regimes can explain the observed link between jets and plumes.

9. Modelling for three dimensional coalescence of two bubbles

Han, R.; Li, S.; Zhang, A. M.; Wang, Q. X.

2016-06-01

This paper is concerned with the three dimensional (3D) interaction and coalescence of two bubbles subject to buoyancy and the dynamics of the subsequent joined bubble using the boundary integral method (BIM). An improved density potential method is implemented to control the mesh quality. It helps to avoid the numerical instabilities, which occur after coalescence. Numerical convergence tests are conducted in terms of mesh sizes and time steps. The 3D numerical model agrees well with an axisymmetric BIM model for axisymmetric cases as well as experimental results captured by high-speed camera. The bubble jetting, interaction, and coalescence of the two bubbles depend on the maximum bubble radii, the centre distance between two bubbles at inception, and the angle β between the centre line and the direction of buoyancy. We investigate coalescence of two bubbles for β = 0, π/4, and π/2, respectively, and at various centre distances at inception. Numerical results presented include the bubble and jet shapes, the velocity, and pressure fields surrounding the bubbles, as well as the time histories of bubble volumes, jet velocities, and positions of centroid of the bubble system.

10. A three-dimensional model of aromatase cytochrome P450.

PubMed Central

Graham-Lorence, S.; Amarneh, B.; White, R. E.; Peterson, J. A.; Simpson, E. R.

1995-01-01

P450 hemeproteins comprise a large gene superfamily that catalyzes monooxygenase reactions in the presence of a redox partner. Because the mammalian members are, without exception, membrane-bound proteins, they have resisted structure-function analysis by means of X-ray crystallographic methods. Among P450-catalyzed reactions, the aromatase reaction that catalyzes the conversion of C19 steroids to estrogens is one of the most complex and least understood. Thus, to better understand the reaction mechanism, we have constructed a three-dimensional model of P450arom not only to examine the active site and those residues potentially involved in catalysis, but to study other important structural features such as substrate recognition and redox-partner binding, which require examination of the entire molecule (excepting the putative membrane-spanning region). This model of P450arom was built based on a "core structure" identified from the structures of the soluble, bacterial P450s (P450cam, P450terp, and P450BM-P) rather than by molecular replacement, after which the less conserved elements and loops were added in a rational fashion. Minimization and dynamic simulations were used to optimize the model and the reasonableness of the structure was evaluated. From this model we have postulated a membrane-associated hydrophobic region of aliphatic and aromatic residues involved in substrate recognition, a redox-partner binding region that may be unique compared to other P450s, as well as residues involved in active site orientation of substrates and an inhibitor of P450arom, namely vorozole. We also have proposed a scheme for the reaction mechanism in which a "threonine switch" determines whether oxygen insertion into the substrate molecule involves an oxygen radical or a peroxide intermediate. PMID:7549871

11. Damaging effects of gliadin on three-dimensional cell culture model

PubMed Central

Dolfini, Ersilia; Elli, Luca; Roncoroni, Leda; Costa, Barbara; Colleoni, Maria Pia; Lorusso, Vito; Ramponi, Simona; Braidotti, Paola; Ferrero, Stefano; Falini, Maria Letizia; Bardella, Maria Teresa

2005-01-01

AIM: To evaluate the effects of gliadin on the oxidative environment in the “ in vivo-like ”model of a three-dimensional cell culture system. METHODS: LoVo cell line (intestinal adenocarcinoma) multicellular spheroids were treated with digested gliadin (with albumin used as a control). Spheroid volumes, cell viability and morphology, lactate dehydrogenase (LDH) release, content of reduced glutathione (GSH) and activity of GSH-related enzymes were examined. The data were statistically analyzed using the Student’s t-test (P<0.05). was considered statistically significant. RESULTS: Gliadin reduced cell viability (from 20% to 60%) and led to morphological alterations characterized by apoptotic findings and cytoskeletal injuries. LDH activity increased. The content of GSH reduced (-20% vs controls), and activity of GSH-related enzymes was significantly inhibited. CONCLUSION: Gliadin treatment induces an imbalance in the antioxidative mechanism of cells cultured by the three-dimensional technique. This alteration may explain the cell damage directly caused by gliadin and the subsequent morphological abnormalities. PMID:16273608

12. One-dimensional frustrated plaquette compass model: Nematic phase and spontaneous multimerization

Brzezicki, Wojciech; Oleś, Andrzej M.

2016-06-01

We introduce a one-dimensional (1D) pseudospin model on a ladder where the Ising interactions along the legs and along the rungs alternate between XiXi +1 and ZiZi +1 for even/odd bond (rung). We include also the next-nearest-neighbor Ising interactions on plaquettes' diagonals that alternate in such a way that a model where only leg interactions are switched on is equivalent to the one when only the diagonal ones are present. Thus in the absence of rung interactions the model can interpolate between two 1D compass models. The model possesses local symmetries which are the parities within each 2 ×2 cell (plaquette) of the ladder. We find that for different values of the interaction it can realize ground states that differ by the patterns formed by these local parities. By exact diagonalization we derive detailed phase diagrams for small systems of L =4 , 6, and 8 plaquettes, and use next L =12 to identify generic phases that appear in larger systems as well. Among them we find a nematic phase with macroscopic degeneracy when the leg and diagonal interactions are equal and the rung interactions are larger than a critical value. By performing a perturbative expansion around this phase we find indeed a very complex competition around the nematic phase which has to do with releasing frustration in this range of parameters. The nematic phase is similar to the one found in the two-dimensional compass model. For particular parameters the low-energy sector of the present plaquette model reduces to a 1D compass model with spins S =1 which suggests that it realizes peculiar crossovers within the class of compass models. Finally, we show that the model can realize phases with broken translation invariance which can be either dimerized, trimerized, etc., or completely disordered and highly entangled in a well identified window of the phase diagram.

13. Startle reduces recall of a recently learned internal model.

PubMed

Wright, Zachary; Patton, James L; Ravichandran, Venn

2011-01-01

Recent work has shown that preplanned motor programs are released early from subcortical areas by the using a startling acoustic stimulus (SAS). Our question is whether this response might also contain a recently learned internal model, which draws on experience to predict and compensate for expected perturbations in a feedforward manner. Studies of adaptation to robotic forces have shown some evidence of this, but were potentially confounded by cocontraction caused by startle. We performed a new adaptation experiment using a visually distorted field that could not be confounded by cocontraction. We found that in all subjects that exhibited startle, the startle stimulus (1) reduced performance of the recently learned task (2) reduced after-effect magnitudes. Because startle reduced but did not eliminate the recall of learned control, we suggest that multiple neural centers (cortical and subcortical) are involved in such learning and adaptation, which can impact training areas such as piloting, teleoperation, sports, and rehabilitation.

14. Three-Dimensional Electron Optics Model Developed for Traveling-Wave Tubes

NASA Technical Reports Server (NTRS)

Kory, Carol L.

2000-01-01

A three-dimensional traveling-wave tube (TWT) electron beam optics model including periodic permanent magnet (PPM) focusing has been developed at the NASA Glenn Research Center at Lewis Field. This accurate model allows a TWT designer to develop a focusing structure while reducing the expensive and time-consuming task of building the TWT and hot-testing it (with the electron beam). In addition, the model allows, for the first time, an investigation of the effect on TWT operation of the important azimuthally asymmetric features of the focusing stack. The TWT is a vacuum device that amplifies signals by transferring energy from an electron beam to a radiofrequency (RF) signal. A critically important component is the focusing structure, which keeps the electron beam from diverging and intercepting the RF slow wave circuit. Such an interception can result in excessive circuit heating and decreased efficiency, whereas excessive growth in the beam diameter can lead to backward wave oscillations and premature saturation, indicating a serious reduction in tube performance. The most commonly used focusing structure is the PPM stack, which consists of a sequence of cylindrical iron pole pieces and opposite-polarity magnets. Typically, two-dimensional electron optics codes are used in the design of magnetic focusing devices. In general, these codes track the beam from the gun downstream by solving equations of motion for the electron beam in static-electric and magnetic fields in an azimuthally symmetric structure. Because these two-dimensional codes cannot adequately simulate a number of important effects, the simulation code MAFIA (solution of Maxwell's equations by the Finite-Integration-Algorithm) was used at Glenn to develop a three-dimensional electron optics model. First, a PPM stack was modeled in three dimensions. Then, the fields obtained using the magnetostatic solver were loaded into a particle-in-cell solver where the fully three-dimensional behavior of the beam

15. Predictive modeling and reducing cyclic variability in autoignition engines

DOEpatents

Hellstrom, Erik; Stefanopoulou, Anna; Jiang, Li; Larimore, Jacob

2016-08-30

Methods and systems are provided for controlling a vehicle engine to reduce cycle-to-cycle combustion variation. A predictive model is applied to predict cycle-to-cycle combustion behavior of an engine based on observed engine performance variables. Conditions are identified, based on the predicted cycle-to-cycle combustion behavior, that indicate high cycle-to-cycle combustion variation. Corrective measures are then applied to prevent the predicted high cycle-to-cycle combustion variation.

16. A quasi-one-dimensional model of thermoacoustics in the presence of mean flow

Holzinger, Tobias; Baumgartner, Armin; Polifke, Wolfgang

2015-01-01

In thermoacoustic regenerators, the interaction of thermo-viscous boundary layers and axial temperature gradients causes a conversion from thermal energy to acoustic power or vice versa. In this paper, an improved analytical model for thermoacoustic boundary layer effects in the presence of mean flow is derived and analyzed. Previous formulations of the thermo-acoustic effect take into account effects of mean flow on acoustic propagation only implicitly, i.e. in as much as mean flow influences the mean temperature field. The new model, however, includes additional terms in the perturbation equations, which describe explicitly the interaction between steady mean flow and acoustics. For a parallel plate pore the three-dimensional thermoacoustic equations are derived and reduced to a transversally averaged system of differential equations by applying Green's function technique and suitable assumptions. The resulting one-dimensional perturbation equations are then solved numerically for two sets of boundary conditions to obtain the linear scattering matrix coefficients. The solutions, generated for a wide range of frequencies, can be applied in a low-order "network model" context to study the stability of thermoacoustic devices. The impact of mean flow on the thermoacoustic interaction is investigated and validated against full computational fluid dynamics simulations of laminar, compressible flow for one specific configuration. It is shown that at low frequencies (Womersley number < 1) the new formulation predicts the acoustic behavior more accurately than the earlier formulations. Finally, the ideas and benefit of further improved and more complex models for higher Mach numbers are discussed.

17. A one-dimensional model for gas-solid heat transfer in pneumatic conveying

Smajstrla, Kody Wayne

A one-dimensional ODE model reduced from a two-fluid model of a higher dimensional order is developed to study dilute, two-phase (air and solid particles) flows with heat transfer in a horizontal pneumatic conveying pipe. Instead of using constant air properties (e.g., density, viscosity, thermal conductivity) evaluated at the initial flow temperature and pressure, this model uses an iteration approach to couple the air properties with flow pressure and temperature. Multiple studies comparing the use of constant or variable air density, viscosity, and thermal conductivity are conducted to study the impact of the changing properties to system performance. The results show that the fully constant property calculation will overestimate the results of the fully variable calculation by 11.4%, while the constant density with variable viscosity and thermal conductivity calculation resulted in an 8.7% overestimation, the constant viscosity with variable density and thermal conductivity overestimated by 2.7%, and the constant thermal conductivity with variable density and viscosity calculation resulted in a 1.2% underestimation. These results demonstrate that gas properties varying with gas temperature can have a significant impact on a conveying system and that the varying density accounts for the majority of that impact. The accuracy of the model is also validated by comparing the simulation results to the experimental values found in the literature.

18. Novel parametric reduced order model for aeroengine blade dynamics

Yuan, Jie; Allegri, Giuliano; Scarpa, Fabrizio; Rajasekaran, Ramesh; Patsias, Sophoclis

2015-10-01

The work introduces a novel reduced order model (ROM) technique to describe the dynamic behavior of turbofan aeroengine blades. We introduce an equivalent 3D frame model to describe the coupled flexural/torsional mode shapes, with their relevant natural frequencies and associated modal masses. The frame configurations are identified through a structural identification approach based on a simulated annealing algorithm with stochastic tunneling. The cost functions are constituted by linear combinations of relative errors associated to the resonance frequencies, the individual modal assurance criteria (MAC), and on either overall static or modal masses. When static masses are considered the optimized 3D frame can represent the blade dynamic behavior with an 8% error on the MAC, a 1% error on the associated modal frequencies and a 1% error on the overall static mass. When using modal masses in the cost function the performance of the ROM is similar, but the overall error increases to 7%. The approach proposed in this paper is considerably more accurate than state-of-the-art blade ROMs based on traditional Timoshenko beams, and provides excellent accuracy at reduced computational time when compared against high fidelity FE models. A sensitivity analysis shows that the proposed model can adequately predict the global trends of the variations of the natural frequencies when lumped masses are used for mistuning analysis. The proposed ROM also follows extremely closely the sensitivity of the high fidelity finite element models when the material parameters are used in the sensitivity.

19. Systematic development of reduced reaction mechanisms for dynamic modeling

NASA Technical Reports Server (NTRS)

Frenklach, M.; Kailasanath, K.; Oran, E. S.

1986-01-01

A method for systematically developing a reduced chemical reaction mechanism for dynamic modeling of chemically reactive flows is presented. The method is based on the postulate that if a reduced reaction mechanism faithfully describes the time evolution of both thermal and chain reaction processes characteristic of a more complete mechanism, then the reduced mechanism will describe the chemical processes in a chemically reacting flow with approximately the same degree of accuracy. Here this postulate is tested by producing a series of mechanisms of reduced accuracy, which are derived from a full detailed mechanism for methane-oxygen combustion. These mechanisms were then tested in a series of reactive flow calculations in which a large-amplitude sinusoidal perturbation is applied to a system that is initially quiescent and whose temperature is high enough to start ignition processes. Comparison of the results for systems with and without convective flow show that this approach produces reduced mechanisms that are useful for calculations of explosions and detonations. Extensions and applicability to flames are discussed.

20. Reduced dimensionality spin-orbit dynamics of CH3 + HCl ⇌ CH4 + Cl on ab initio surfaces.

PubMed

Remmert, Sarah M; Banks, Simon T; Harvey, Jeremy N; Orr-Ewing, Andrew J; Clary, David C

2011-05-28

A reduced dimensionality quantum scattering method is extended to the study of spin-orbit nonadiabatic transitions in the CH(3) + HCl ⇌ CH(4) + Cl((2)P(J)) reaction. Three two-dimensional potential energy surfaces are developed by fitting a 29 parameter double-Morse function to CCSD(T)/IB//MP2/cc-pV(T+d)Z-dk ab initio data; interaction between surfaces is described by geometry-dependent spin-orbit coupling functions fit to MCSCF/cc-pV(T+d)Z-dk ab initio data. Spectator modes are treated adiabatically via inclusion of curvilinear projected frequencies. The total scattering wave function is expanded in a vibronic basis set and close-coupled equations are solved via R-matrix propagation. Ground state thermal rate constants for forward and reverse reactions agree well with experiment. Multi-surface reaction probabilities, integral cross sections, and initial-state selected branching ratios all highlight the importance of vibrational energy in mediating nonadiabatic transition. Electronically excited state dynamics are seen to play a small but significant role as consistent with experimental conclusions.

1. A reduced dimensionality quantum mechanical study of the H + HCF3 ↔ H2 + CF3 reaction.

PubMed

Shan, Xiao; Clary, David C

2013-11-14

Recently, the authors developed a new method to construct a two-dimensional potential energy surface (PES) for use in reduced-dimensionality quantum scattering calculations in chemical reactions. In this approach the minimum energy path of a reaction was utilized and the rest of the surface was fitted by a Morse function. Here we test this method on the H + HCF3 ↔ H2 + CF3 reaction. The geometry optimizations and frequency calculations are done at the MP2/cc-pVTZ level of theory, while the energies are calculated at the CCSD(T)/aug-cc-pVTZ level. An adiabatic energy barrier of 59.61 kJ mol(-1) for the forward direction is suggested by our calculations, and the reaction is endothermic by 10.55 kJ mol(-1) in the same direction. When compared to classical transition state theory, quantum scattering calculations suggest that a tunnelling effect can be observed in both forward and backward reactions. For the forward direction, the quantum tunnelling is important at temperatures typically lower than 300 K. It has a greater contribution to the backward reaction, and is over a wider temperature range from 200 K to 1000 K. We also conducted an analysis of the kinetic isotope effects on the backward reaction by replacing H2 with D2. These results also clearly demonstrate the significance of quantum tunnelling in the reaction.

2. Reducing uncertainty in risk modeling for methylmercury exposure

SciTech Connect

Ponce, R.; Egeland, G.; Middaugh, J.; Lee, R.

1995-12-31

The biomagnification and bioaccumulation of methylmercury in marine species represents a challenge for risk assessment related to the consumption of subsistence foods in Alaska. Because of the profound impact that food consumption advisories have on indigenous peoples seeking to preserve a way of life, there is a need to reduce uncertainty in risk assessment. Thus, research was initiated to reduce the uncertainty in assessing the health risks associated with the consumption of subsistence foods. Because marine subsistence foods typically contain elevated levels of methylmercury, preliminary research efforts have focused on methylmercury as the principal chemical of concern. Of particular interest are the antagonistic effects of selenium on methylmercury toxicity. Because of this antagonism, methylmercury exposure through the consumption of marine mammal meat (with high selenium) may not be as toxic as comparable exposures through other sources of dietary intake, such as in the contaminated bread episode of Iraq (containing relatively low selenium). This hypothesis is supported by animal experiments showing reduced toxicity of methylmercury associated with marine mammal meat, by the antagonistic influence of selenium on methylmercury toxicity, and by negative clinical findings in adult populations exposed to methylmercury through a marine diet not subject to industrial contamination. Exploratory model development is underway to identify potential improvements and applications of current deterministic and probabilistic models, particularly by incorporating selenium as an antagonist in risk modeling methods.

3. Reduced-Order Modeling of a Heaving Airfoil

NASA Technical Reports Server (NTRS)

Haj-Hariri, H.; Murphy, P. C.; Lewin, G. C.

2005-01-01

A reduced-order model of a flapping airfoil is developed using Proper Orthogonal Decomposition (POD). The proper basis functions, developed from snapshots of full Navier-Stokes simulations, are used for a Galerkin projection of the governing equations. The resulting coupled, nonlinear ordinary di.erential equations have a low dimension because the first few basis members capture most of the energy of the flow. The reduced-order model is used to simulate heaving motions that are both similar to and different from the motion(s) used to generate the basis functions, and the errors in the model are quantified. Several methods are used to generate mode sets that can be used over a range of heaving parameters, including snapshots from one, two, and multiple Navier-Stokes simulations. As snapshots from additional simulations are added to the decomposition, the mode sets become richer and can simulate a wider range of parameter space, at some computational cost. Whereas the POD method is fully applicable in three dimensions, the simulation technique based on a body-fixed and body-fitted grid suffers large overhead when extended to three dimensions. To reduce the overhead, an embedding technique is discussed which embeds the solid wing into a fixed Cartesian grid. The wing, which can now have multiple pieces and also be flexible, is represented by a distribution of body forces. This distribution is determined to give exactly the flow around a flapping wing.

4. Underwater drag-reducing effect of superhydrophobic submarine model.

PubMed

Zhang, Songsong; Ouyang, Xiao; Li, Jie; Gao, Shan; Han, Shihui; Liu, Lianhe; Wei, Hao

2015-01-01

To address the debates on whether superhydrophobic coatings can reduce fluid drag for underwater motions, we have achieved an underwater drag-reducing effect of large superhydrophobic submarine models with a feature size of 3.5 cm × 3.7 cm × 33.0 cm through sailing experiments of submarine models, modified with and without superhydrophobic surface under similar power supply and experimental conditions. The drag reduction rate reached as high as 15%. The fabrication of superhydrophobic coatings on a large area of submarine model surfaces was realized by immobilizing hydrophobic copper particles onto a precross-linked polydimethylsiloxane (PDMS) surface. The pre-cross-linking time was optimized at 20 min to obtain good superhydrophobicity for the underwater drag reduction effect by investigating the effect of pre-cross-linking on surface wettability and water adhesive property. We do believe that superhydrophobic coatings may provide a promising application in the field of drag-reducing of vehicle motions on or under the water surface.

5. Mechanistically Consistent Reduced Models of Synthetic Gene Networks

PubMed Central

Mier-y-Terán-Romero, Luis; Silber, Mary; Hatzimanikatis, Vassily

2013-01-01

Designing genetic networks with desired functionalities requires an accurate mathematical framework that accounts for the essential mechanistic details of the system. Here, we formulate a time-delay model of protein translation and mRNA degradation by systematically reducing a detailed mechanistic model that explicitly accounts for the ribosomal dynamics and the cleaving of mRNA by endonucleases. We exploit various technical and conceptual advantages that our time-delay model offers over the mechanistic model to probe the behavior of a self-repressing gene over wide regions of parameter space. We show that a heuristic time-delay model of protein synthesis of a commonly used form yields a notably different prediction for the parameter region where sustained oscillations occur. This suggests that such heuristics can lead to erroneous results. The functional forms that arise from our systematic reduction can be used for every system that involves transcription and translation and they could replace the commonly used heuristic time-delay models for these processes. The results from our analysis have important implications for the design of synthetic gene networks and stress that such design must be guided by a combination of heuristic models and mechanistic models that include all relevant details of the process. PMID:23663853

6. Bayesian analysis of a reduced-form air quality model.

PubMed

Foley, Kristen M; Reich, Brian J; Napelenok, Sergey L

2012-07-17

Numerical air quality models are being used for assessing emission control strategies for improving ambient pollution levels across the globe. This paper applies probabilistic modeling to evaluate the effectiveness of emission reduction scenarios aimed at lowering ground-level ozone concentrations. A Bayesian hierarchical model is used to combine air quality model output and monitoring data in order to characterize the impact of emissions reductions while accounting for different degrees of uncertainty in the modeled emissions inputs. The probabilistic model predictions are weighted based on population density in order to better quantify the societal benefits/disbenefits of four hypothetical emission reduction scenarios in which domain-wide NO(x) emissions from various sectors are reduced individually and then simultaneously. Cross validation analysis shows the statistical model performs well compared to observed ozone levels. Accounting for the variability and uncertainty in the emissions and atmospheric systems being modeled is shown to impact how emission reduction scenarios would be ranked, compared to standard methodology.

7. Development and validation of a two-dimensional fast-response flood estimation model

SciTech Connect

Judi, David R; Mcpherson, Timothy N; Burian, Steven J

2009-01-01

A finite difference formulation of the shallow water equations using an upwind differencing method was developed maintaining computational efficiency and accuracy such that it can be used as a fast-response flood estimation tool. The model was validated using both laboratory controlled experiments and an actual dam breach. Through the laboratory experiments, the model was shown to give good estimations of depth and velocity when compared to the measured data, as well as when compared to a more complex two-dimensional model. Additionally, the model was compared to high water mark data obtained from the failure of the Taum Sauk dam. The simulated inundation extent agreed well with the observed extent, with the most notable differences resulting from the inability to model sediment transport. The results of these validation studies complex two-dimensional model. Additionally, the model was compared to high water mark data obtained from the failure of the Taum Sauk dam. The simulated inundation extent agreed well with the observed extent, with the most notable differences resulting from the inability to model sediment transport. The results of these validation studies show that a relatively numerical scheme used to solve the complete shallow water equations can be used to accurately estimate flood inundation. Future work will focus on further reducing the computation time needed to provide flood inundation estimates for fast-response analyses. This will be accomplished through the efficient use of multi-core, multi-processor computers coupled with an efficient domain-tracking algorithm, as well as an understanding of the impacts of grid resolution on model results.

8. Chemistry and Transport in a Multi-Dimensional Model

NASA Technical Reports Server (NTRS)

Yung, Yuk L.

2004-01-01

Our work has two primary scientific goals, the interannual variability (IAV) of stratospheric ozone and the hydrological cycle of the upper troposphere and lower stratosphere. Our efforts are aimed at integrating new information obtained by spacecraft and aircraft measurements to achieve a better understanding of the chemical and dynamical processes that are needed for realistic evaluations of human impact on the global environment. A primary motivation for studying the ozone layer is to separate the anthropogenic perturbations of the ozone layer from natural variability. Using the recently available merged ozone data (MOD), we have carried out an empirical orthogonal function EOF) study of the temporal and spatial patterns of the IAV of total column ozone in the tropics. The outstanding problem about water in the stratosphere is its secular increase in the last few decades. The Caltech/PL multi-dimensional chemical transport model (CTM) photochemical model is used to simulate the processes that control the water vapor and its isotopic composition in the stratosphere. Datasets we will use for comparison with model results include those obtained by the Total Ozone Mapping Spectrometer (TOMS), the Solar Backscatter Ultraviolet (SBUV and SBUV/2), Stratosphere Aerosol and Gas Experiment (SAGE I and II), the Halogen Occultation Experiment (HALOE), the Atmospheric Trace Molecular Spectroscopy (ATMOS) and those soon to be obtained by the Cirrus Regional Study of Tropical Anvils and Cirrus Layers Florida Area Cirrus Experiment (CRYSTAL-FACE) mission. The focus of the investigations is the exchange between the stratosphere and the troposphere, and between the troposphere and the biosphere.

9. Three dimensional thermobaric modeling of a gas hydrate system

Williams, Amanda Quigley

Seismic imaging is recognized as the most cost effective method for identifying the presence of gas hydrate resources. The base of the gas hydrate stability zone is recognized by the presence of regionally extensive bottom simulating reflectors (BSR). However, in some areas such as the Gulf of Mexico, regionally extensive BSRs are not found. In such cases, an understanding of the thermobaric conditions may be used to determine the location of gas hydrates and the base of the gas hydrate stability zone. The aim of this research is to combine seismic velocity analysis and thermal modeling to predict the base of the hydrate stability zone. As a case study, we apply this modeling to the extensively documented site at Woolsey Mound, MC-118, Gulf of Mexico. Woolsey Mound, and much of the Gulf of Mexico, has been greatly affected by salt tectonics. Multiple seismic and CHIRP surveys have been collected at Woolsey Mound, but the base of the gas hydrate stability zone has been elusive due to the complexities associated with the presence of salt. The velocity analysis and previous studies on the sedimentary environment were the basis to derive the thermal and salinity conditions. Data from the heat flow survey provide an upper boundary condition at the sea floor in order to create a more accurate thermal model; the velocity model helped accurately place the salt diapir within the mound system. Hydrate phase equilibrium models were used to estimate a thermobaric model for Woolsey Mound. Using two different salinity gradients, the base of the gas hydrate stability zone was found to be located within 70 m of the seafloor with a salt concentration up to 90% at the shallowest point of the salt diapir, and 120 m of the seafloor with a salt concentration up to standard temperature and pressure conditions of salt (of approximately 56%) at the shallowest point of the salt diapir. This study provides a preliminary look at how the temperature and salinity affect the depth at which gas

10. Evaluation of the parameters affecting bone temperature during drilling using a three-dimensional dynamic elastoplastic finite element model.

PubMed

Chen, Yung-Chuan; Tu, Yuan-Kun; Zhuang, Jun-Yan; Tsai, Yi-Jung; Yen, Cheng-Yo; Hsiao, Chih-Kun

2017-03-28

A three-dimensional dynamic elastoplastic finite element model was constructed and experimentally validated and was used to investigate the parameters which influence bone temperature during drilling, including the drill speed, feeding force, drill bit diameter, and bone density. Results showed the proposed three-dimensional dynamic elastoplastic finite element model can effectively simulate the temperature elevation during bone drilling. The bone temperature rise decreased with an increase in feeding force and drill speed, however, increased with the diameter of drill bit or bone density. The temperature distribution is significantly affected by the drilling duration; a lower drilling speed reduced the exposure duration, decreases the region of the thermally affected zone. The constructed model could be applied for analyzing the influence parameters during bone drilling to reduce the risk of thermal necrosis. It may provide important information for the design of drill bits and surgical drilling powers.

11. A perspective on bridging scales and design of models using low-dimensional manifolds and data-driven model inference.

PubMed

Tegnér, Jesper; Zenil, Hector; Kiani, Narsis A; Ball, Gordon; Gomez-Cabrero, David

2016-11-13

Systems in nature capable of collective behaviour are nonlinear, operating across several scales. Yet our ability to account for their collective dynamics differs in physics, chemistry and biology. Here, we briefly review the similarities and differences between mathematical modelling of adaptive living systems versus physico-chemical systems. We find that physics-based chemistry modelling and computational neuroscience have a shared interest in developing techniques for model reductions aiming at the identification of a reduced subsystem or slow manifold, capturing the effective dynamics. By contrast, as relations and kinetics between biological molecules are less characterized, current quantitative analysis under the umbrella of bioinformatics focuses on signal extraction, correlation, regression and machine-learning analysis. We argue that model reduction analysis and the ensuing identification of manifolds bridges physics and biology. Furthermore, modelling living systems presents deep challenges as how to reconcile rich molecular data with inherent modelling uncertainties (formalism, variables selection and model parameters). We anticipate a new generative data-driven modelling paradigm constrained by identified governing principles extracted from low-dimensional manifold analysis. The rise of a new generation of models will ultimately connect biology to quantitative mechanistic descriptions, thereby setting the stage for investigating the character of the model language and principles driving living systems.This article is part of the themed issue 'Multiscale modelling at the physics-chemistry-biology interface'.

12. A perspective on bridging scales and design of models using low-dimensional manifolds and data-driven model inference

PubMed Central

Zenil, Hector; Kiani, Narsis A.; Ball, Gordon; Gomez-Cabrero, David

2016-01-01

Systems in nature capable of collective behaviour are nonlinear, operating across several scales. Yet our ability to account for their collective dynamics differs in physics, chemistry and biology. Here, we briefly review the similarities and differences between mathematical modelling of adaptive living systems versus physico-chemical systems. We find that physics-based chemistry modelling and computational neuroscience have a shared interest in developing techniques for model reductions aiming at the identification of a reduced subsystem or slow manifold, capturing the effective dynamics. By contrast, as relations and kinetics between biological molecules are less characterized, current quantitative analysis under the umbrella of bioinformatics focuses on signal extraction, correlation, regression and machine-learning analysis. We argue that model reduction analysis and the ensuing identification of manifolds bridges physics and biology. Furthermore, modelling living systems presents deep challenges as how to reconcile rich molecular data with inherent modelling uncertainties (formalism, variables selection and model parameters). We anticipate a new generative data-driven modelling paradigm constrained by identified governing principles extracted from low-dimensional manifold analysis. The rise of a new generation of models will ultimately connect biology to quantitative mechanistic descriptions, thereby setting the stage for investigating the character of the model language and principles driving living systems. This article is part of the themed issue ‘Multiscale modelling at the physics–chemistry–biology interface’. PMID:27698038

13. Comparison of Applying FOUR Reduced Order Models to a Global Sensitivity Analysis

Zhang, Y.; Oladyshkin, S.; Liu, Y.; Pau, G. S. H.

2014-12-01

This study focuses on the comparison of applying four reduced order models (ROMs) to global sensitivity analysis (GSA). ROM is one way to improve computational efficiency in many-query applications such as optimization, uncertainty quantification, sensitivity analysis, inverse modeling where the computational demand can become large. The four ROM methods are: arbitrary Polynomial Chaos (aPC), Gaussian process regression (GPR), cut high dimensional model representation (HDMR), and random sample HDMR. The discussion is mainly based on a global sensitivity analysis performed for a hypothetical large-scale CO2 storage project. Pros and cons of each method will be discussed and suggestions on how each method should be applied individually or combined will be made.

14. Three-dimensional effects for radio frequency antenna modeling

SciTech Connect

Carter, M.D.; Batchelor, D.B.; Stallings, D.C.

1993-09-01

15. Simulation of reactive nanolaminates using reduced models: II. Normal propagation

SciTech Connect

Salloum, Maher; Knio, Omar M.

2010-03-15

Transient normal flame propagation in reactive Ni/Al multilayers is analyzed computationally. Two approaches are implemented, based on generalization of earlier methodology developed for axial propagation, and on extension of the model reduction formalism introduced in Part I. In both cases, the formulation accommodates non-uniform layering as well as the presence of inert layers. The equations of motion for the reactive system are integrated using a specially-tailored integration scheme, that combines extended-stability, Runge-Kutta-Chebychev (RKC) integration of diffusion terms with exact treatment of the chemical source term. The detailed and reduced models are first applied to the analysis of self-propagating fronts in uniformly-layered materials. Results indicate that both the front velocities and the ignition threshold are comparable for normal and axial propagation. Attention is then focused on analyzing the effect of a gap composed of inert material on reaction propagation. In particular, the impacts of gap width and thermal conductivity are briefly addressed. Finally, an example is considered illustrating reaction propagation in reactive composites combining regions corresponding to two bilayer widths. This setup is used to analyze the effect of the layering frequency on the velocity of the corresponding reaction fronts. In all cases considered, good agreement is observed between the predictions of the detailed model and the reduced model, which provides further support for adoption of the latter. (author)

16. Three-dimensional parabolic equation modeling of mesoscale eddy deflection.

PubMed

Heaney, Kevin D; Campbell, Richard L

2016-02-01

The impact of mesoscale oceanography, including ocean fronts and eddies, on global scale low-frequency acoustics is examined using a fully three-dimensional parabolic equation model. The narrowband acoustic signal, for frequencies from 2 to 16 Hz, is simulated from a seismic event on the Kerguellen Plateau in the South Indian Ocean to an array of receivers south of Ascension Island in the South Atlantic, a distance of 9100 km. The path was chosen for its relevance to seismic detections from the HA10 Ascension Island station of the International Monitoring System, for its lack of bathymetric interaction, and for the dynamic oceanography encountered as the sound passes the Cape of Good Hope. The acoustic field was propagated through two years (1992 and 1993) of the eddy-permitting ocean state estimation ECCO2 (Estimating the Circulation and Climate of the Ocean, Phase II) system. The range of deflection of the back-azimuth was 1.8° with a root-mean-square of 0.34°. The refraction due to mesoscale oceanography could therefore have significant impacts upon localization of distant low-frequency sources, such as seismic or nuclear test events.

17. A Three-Dimensional Unsteady CFD Model of Compressor Stability

NASA Technical Reports Server (NTRS)

Chima, Rodrick V.

2006-01-01

A three-dimensional unsteady CFD code called CSTALL has been developed and used to investigate compressor stability. The code solved the Euler equations through the entire annulus and all blade rows. Blade row turning, losses, and deviation were modeled using body force terms which required input data at stations between blade rows. The input data was calculated using a separate Navier-Stokes turbomachinery analysis code run at one operating point near stall, and was scaled to other operating points using overall characteristic maps. No information about the stalled characteristic was used. CSTALL was run in a 2-D throughflow mode for very fast calculations of operating maps and estimation of stall points. Calculated pressure ratio characteristics for NASA stage 35 agreed well with experimental data, and results with inlet radial distortion showed the expected loss of range. CSTALL was also run in a 3-D mode to investigate inlet circumferential distortion. Calculated operating maps for stage 35 with 120 degree distortion screens showed a loss in range and pressure rise. Unsteady calculations showed rotating stall with two part-span stall cells. The paper describes the body force formulation in detail, examines the computed results, and concludes with observations about the code.

18. Efimov-Like Behaviour in Low-Dimensional Polymer Models

Mura, Federica; Bhattacharjee, Somendra M.; Maji, Jaya; Masetto, Mario; Seno, Flavio; Trovato, Antonio

2016-10-01

In the quantum Efimov effect, identical bosons form infinitely many bound trimer states at the bound dimer dissociation threshold, with their energy spectrum obeying a universal geometrical scaling law. Inspired by the formal correspondence between the possible trajectories of a quantum particle and the possible conformations of a polymer chain, the existence of a triple-stranded DNA bound state when a double-stranded DNA is not stable was recently predicted by modelling three directed polymer chains in low-dimensional lattices, both fractal (d<1) and euclidean (d=1). A finite melting temperature for double-stranded DNA requires in d≤ 2 the introduction of a weighting factor penalizing the formation of denaturation bubbles, that is non-base paired portions of DNA. The details of how bubble weighting is defined for a three-chain system were shown to crucially affect the presence of Efimov-like behaviour on a fractal lattice. Here we assess the same dependence on the euclidean 1+1 lattice, by setting up the transfer matrix method for three infinitely long chains confined in a finite size geometry. This allows us to discriminate unambiguously between the absence of Efimov-like behaviour and its presence in a very narrow temperature range, in close correspondence with what was already found on the fractal lattice. When present, however, no evidence is found for triple-stranded bound states other than the ground state at the two-chain melting temperature.

19. A Three-Dimensional Model of the Yeast Genome

PubMed Central

Duan, Zhijun; Andronescu, Mirela; Schutz, Kevin; Mcllwain, Sean; Kim, Yoo Jung; Lee, Choli; Shendure, Jay; Fields, Stanley; Blau, C. Anthony; Noble, William S.

2010-01-01

Layered on top of information conveyed by DNA sequence and chromatin are higher order structures that encompass portions of chromosomes, entire chromosomes, and even whole genomes1-3. Interphase chromosomes are not positioned randomly within the nucleus but instead adopt preferred conformations4-7. Disparate DNA elements co-localize into functionally defined aggregates or “factories” for transcription8 and DNA replication9. In budding yeast, Drosophila and many other eukaryotes, chromosomes adopt a Rabl configuration, with arms extending from centromeres adjacent to the spindle pole body to telomeres that abut the nuclear envelope10-12. Nonetheless, the topologies and spatial relationships of chromosomes remain poorly understood. Here we developed a method to globally capture intra- and inter-chromosomal interactions, and applied it to generate a map at kilobase resolution of the haploid genome of Saccharomyces cerevisiae. The map recapitulates known features of genome organization, thereby validating the method, and identifies new features. Extensive regional and higher order folding of individual chromosomes is observed. Chromosome XII exhibits a striking conformation that implicates the nucleolus as a formidable barrier to interaction between DNA sequences at either end. Inter-chromosomal contacts are anchored by centromeres and include interactions among tRNA genes, among origins of early DNA replication and among sites where chromosomal breakpoints occur. Finally, we constructed a three-dimensional model of the yeast genome. Our findings provide a glimpse of the interface between the form and function of a eukaryotic genome. PMID:20436457

20. Clubfoot analysis with three-dimensional foot models.

PubMed

Song, H R; Carroll, N C; Neyt, J; Carter, J M; Han, J; D'Amato, C R

1999-01-01

The purpose of this study was to develop a method of defining, in mathematical terms, the interpositional relationships of the bones of the hindfoot complex in the idiopathic clubfoot and the neurogenic clubfoot. The neurogenic clubfoot and contralateral normal-appearing foot of a stillborn infant with myelomeningocele, and the normal foot of a 10-year-old were sectioned with a cryomicrotome. Magnetic resonance images (MRIs) of the clubfoot and the normal foot of a 3-month-old boy were obtained. Using a computer program, three-dimensional foot models were generated from the digitized cryomicrotome sections and from the MRIs. The central principal axes were determined for the talus and calcaneus. The long central principal axes of the talus and calcaneus were neutrally rotated with reference to the bimalleolar axis in the idiopathic clubfoot while in the neurogenic clubfoot the long central principal axis of the talus was medially rotated 52 degrees and that of the calcaneus 10 degrees. The talocalcaneal angles defined by the long central principal axes in the superior and medial views were 0 degree and 10 degrees, respectively, in the idiopathic clubfoot, and 42 degrees and 56 degrees, respectively, in the neurogenic clubfoot.

1. Dispersive excitations in one-dimensional ionic Hubbard model

Hafez Torbati, M.; Drescher, Nils A.; Uhrig, Götz S.

2014-06-01

A detailed study of the one-dimensional ionic Hubbard model with interaction U is presented. We focus on the band insulating (BI) phase and the spontaneously dimerized insulating (SDI) phase which appears on increasing U. By a recently introduced continuous unitary transformation [H. Krull et al., Phys. Rev. B 86, 125113 (2012), 10.1103/PhysRevB.86.125113] we are able to describe the system even close to the phase transition from BI to SDI although the bare perturbative series diverges before the transition is reached. First, the dispersion of single fermionic quasiparticles is determined in the full Brillouin zone. Second, we describe the binding phenomena between two fermionic quasiparticles leading to an S =0 and to an S =1 exciton. The latter corresponds to the lowest spin excitation and defines the spin gap which remains finite through the transition from BI to SDI. The former becomes soft at the transition, indicating that the SDI corresponds to a condensate of these S =0 excitons. This view is confirmed by a BCS mean-field theory for the SDI phase.

2. Three-dimensional model of magnetized capacitively coupled plasmas

Rauf, Shahid; Kenney, Jason; Collins, Ken

2009-05-01

A three-dimensional plasma model is used to understand the characteristics of magnetized capacitively coupled plasma discharges. The simulations consider plasmas generated using high frequency (13.5 MHz) and very high frequency (162 MHz) sources, electropositive (Ar) and electronegative (O2) gases, and spatially uniform and nonuniform magnetic fields. Application of a magnetic field parallel to the electrodes is found to enhance the plasma density due to improved electron confinement and shift the plasma due to the E ×B drift. The plasma is electrically symmetric at 162 MHz so it drifts in opposite directions adjacent to the two electrodes due to the E ×B drift. On the other hand, the 13.5 MHz plasma is electrically asymmetric and it predominantly moves in one direction under the influence of the E ×B drift. The E ×B drift focuses the plasma into a smaller volume in regions with convex magnetic field lines. Conversely, the E ×B drift spreads out the plasma in regions with concave magnetic field lines. In a magnetized O2 plasma, the overall plasma is found to move in one direction due to the E ×B drift while the plasma interior moves in the opposite direction. This behavior is linked to the propensity of negative ions to reside in regions of peak plasma potential, which moves closer to the chamber center opposite to the E ×B drift direction.

3. A practical implementation of turbulence models for the computation of three-dimensional separated flows

NASA Technical Reports Server (NTRS)

Marx, Yves P.

1991-01-01

An upwind MUSCL-type implicit scheme for the three-dimensional Navier-Stokes equations is presented and details on the implementation for three-dimensional flows of a 'diagonal' upwind implicit operator are developed. Turbulence models for separated flows are also described with an emphasis on the numerical specificities of the Johnson-King nonequilibrium model. Good predictions of separated two- and three-dimensional flows are demonstrated.

4. Three-Dimensional Multiscale MHD Model of Cometary Plasma Environments

NASA Technical Reports Server (NTRS)

Gombosi, Tamas I.; DeZeeuw, Darren L.; Haberli, Roman M.; Powell, Kenneth G.

1996-01-01

First results of a three-dimensional multiscale MHD model of the interaction of an expanding cometary atmosphere with the magnetized solar wind are presented. The model starts with a supersonic and super-Alfvenic solar wind far upstream of the comet (25 Gm upstream of the nucleus) with arbitrary interplanetary magnetic field orientation. The solar wind is continuously mass loaded with cometary ions originating from a 10-km size nucleus. The effects of photoionization, electron impact ionization, recombination, and ion-neutral frictional drag are taken into account in the model. The governing equations are solved on an adaptively refined unstructured Cartesian grid using our new multiscale upwind scalar conservation laws-type numerical technique (MUSCL). We have named this the multiscale adaptive upwind scheme for MHD (MAUS-MHD). The combination of the adaptive refinement with the MUSCL-scheme allows the entire cometary atmosphere to be modeled, while still resolving both the shock and the diamagnetic cavity of the comet. The main findings are the following: (1) Mass loading decelerates the solar wind flow upstream of the weak cometary shock wave (M approximately equals 2, M(sub A) approximately equals 2), which forms at a subsolar standoff distance of about 0.35 Gm. (2) A cometary plasma cavity is formed at around 3 x 10(exp 3) km from the nucleus. Inside this cavity the plasma expands outward due to the frictional interaction between ions and neutrals. On the nightside this plasma cavity considerably narrows and a relatively fast and dense cometary plasma beam is ejected into the tail. (3) Inside the plasma cavity a teardrop-shaped inner shock is formed, which is terminated by a Mach disk on the nightside. Only the region inside the inner shock is the 'true' diamagnetic cavity. (4) The model predicts four distinct current systems in the inner coma: the density peak current, the cavity boundary current, the inner shock current, and finally the cross-tail current

5. Three-dimensional Thermal Model of the Mexican Subduction Zone

Rosas, J. C.; Pimentel, F. D. C.; Currie, C. A.; He, J.; Harris, R. N.

2015-12-01

Along the Mexican section of the Middle America Trench (MAT), the Cocos plate subducts beneath the North American plate. The most important feature of this subduction zone is the flat-slab section below central Mexico, extending approximately 250 km landward from the trench at a depth of 50 km. Further west, the dip changes to 45-50º. This particular geometry has several unique consequences, such as a volcanic arc that is not aligned with the trench and very shallow slab seismicity. For the mantle wedge, the abrupt change in slab geometry could lead to a three-dimensional (3D) mantle wedge flow that departs from the classical 2D subduction-driven corner flow. Evidence of 3D flow in the region comes from seismic anisotropy studies, which show that olivine fast-direction axes have a component that is parallel to the MAT. In other subduction zones, such as Costa Rica-Nicaragua and Japan, 3D flow has been observed to increase temperatures by >50º C relative to corner flow models.For this study, we have created the first 3D finite-element model of the Mexican subduction zone in order to analyze its thermal structure. Our objective is to assess the effects of 3D mantle flow and hydrothermal circulation (HC) in the subducting slab. In this region, low surface heat flow values near the trench indicate that HC may remove heat from the oceanic plate. Our model incorporates the effect of HC through conductivity proxies in the subducting crust and a 2D oceanic geotherm that includes the age variations of the Cocos plate along the MAT. For an isoviscous mantle, our model shows that the slab dip variations induce a flow that departs from 2D corner flow near the transition between the flat-slab and normal-dipping sections. The mantle flows in eastward direction toward the flat slab, and its orientation is consistent with seismic anisotropy studies. The maximum along-margin flow rate is nearly 2 cm/yr, which is >30% of the convergence rate. Temperatures at the location of this

6. Quasi-one-dimensional models for glassy dynamics

Pal, Prasanta

2011-12-01

We describe analytical calculations and simulations of the quasi-one-dimensional (Q1-D) model for glassy dynamics. In the Q1-D models, hard rods undergo single-file diffusion through a series of narrow channels connected by J intersections. The topology of the model is specified by J, the maximum number of rods in each middle channel K, and the number of rods N. We assume that the rods cannot turn at the intersections, and thus there is a single, continuous route through the system. This model displays hallmarks of glassy dynamics including caging behavior and subdiffusion, rapid growth in the structural relaxation time and collective particle rearrangements. The mean-square displacement Sigma(t) for the Q1-D model displays four dynamical regimes: 1) short-time diffusion Sigma( t) ˜ t, 2) a plateau Sigma(t) ˜ t0 caused by caging behavior, 3) single-file diffusion characterized by anomalous scaling Sigma(t) ˜ t0.5 at intermediate times, and 4) a crossover to long-tine diffusion Sigma(t) ˜ t for times that grow with the system size. We develop a general procedure for calculating analytically the structural relaxation time tD, beyond which the system undergoes long-time diffusion, as a function of density and system topology. The method involves several steps: 1) uniquely defining the set of microstates for the system and transitions among them, 2) constructing networks of connected microstates and identifying minimal, closed, directed loops that give rise to structural relaxation, 3) calculating the probabilities for obtaining each of the microstates that form the closed loops and for transitioning from one microstate to another, and 4) using these probabilities to deduce the dependence of tD on packing fraction. We find that to obeys power-law scaling tD ˜ (φ g-φ)-alpha, where φ g (the packing fraction corresponding to complete kinetic arrest) and alpha depend on the system topology, and can be calculated exactly. The analytical calculations are supported

7. Three-dimensional multispecies nonlinear tumor growth–I. Model and numerical method

PubMed Central

Wise, S.M.; Lowengrub, J.S.; Frieboes, H.B.; Cristini, V.

2012-01-01

This is the first paper in a two-part series in which we develop, analyze and simulate a diffuse interface continuum model of multispecies tumor growth and tumor-induced angiogenesis in two and three dimensions. Three dimensional simulations of nonlinear tumor growth and neovascularization using this diffuse interface model were recently presented in Frieboes et al. (2007), but that paper did not describe the details of the model or the numerical algorithm. This is done here. In this diffuse interface approach, sharp interfaces are replaced by narrow transition layers that arise due to differential adhesive forces among the cell-species. Accordingly, a continuum model of adhesion is introduced. The model is thermodynamically consistent, is related to recently developed mixture models, and thus is capable of providing a detailed description of tumor progression. The model is well-posed and consists of fourth-order nonlinear advection-reaction-diffusion equations (of Cahn-Hilliard-type) for the cell-species coupled with reaction-diffusion equations for the substrate components. We demonstrate analytically and numerically that when the diffuse interface thickness tends to zero, the system reduces to a classical sharp interface model. Using a new fully adaptive, nonlinear multigrid/finite difference method the system is simulated efficiently. In this first paper, we present simulations of unstable avascular tumor growth in two and three dimensions and demonstrate that our techniques now make large-scale three dimensional simulations of tumors with complex morphologies computationally feasible. In Part II of this study, we will investigate multispecies tumor invasion, tumor-induced angiogenesis and focus on the morphological instabilities that may underlie invasive phenotypes. PMID:18485374

8. 3-dimensional modeling of transcranial magnetic stimulation: Design and application

Salinas, Felipe Santiago

Over the past three decades, transcranial magnetic stimulation (TMS) has emerged as an effective tool for many research, diagnostic and therapeutic applications in humans. TMS delivers highly localized brain stimulations via non-invasive externally applied magnetic fields. This non-invasive, painless technique provides researchers and clinicians a unique tool capable of stimulating both the central and peripheral nervous systems. However, a complete analysis of the macroscopic electric fields produced by TMS has not yet been performed. In this dissertation, we present a thorough examination of the total electric field induced by TMS in air and a realistic head model with clinically relevant coil poses. In the first chapter, a detailed account of TMS coil wiring geometry was shown to provide significant improvements in the accuracy of primary E-field calculations. Three-dimensional models which accounted for the TMS coil's wire width, height, shape and number of turns clearly improved the fit of calculated-to-measured E-fields near the coil body. Detailed primary E-field models were accurate up to the surface of the coil body (within 0.5% of measured values) whereas simple models were often inadequate (up to 32% different from measured). In the second chapter, we addressed the importance of the secondary E-field created by surface charge accumulation during TMS using the boundary element method (BEM). 3-D models were developed using simple head geometries in order to test the model and compare it with measured values. The effects of tissue geometry, size and conductivity were also investigated. Finally, a realistic head model was used to assess the effect of multiple surfaces on the total E-field. We found that secondary E-fields have the greatest impact at areas in close proximity to each tissue layer. Throughout the head, the secondary E-field magnitudes were predominantly between 25% and 45% of the primary E-fields magnitude. The direction of the secondary E

9. Construction of energy-stable Galerkin reduced order models.

SciTech Connect

Kalashnikova, Irina; Barone, Matthew Franklin; Arunajatesan, Srinivasan; van Bloemen Waanders, Bart Gustaaf

2013-05-01

This report aims to unify several approaches for building stable projection-based reduced order models (ROMs). Attention is focused on linear time-invariant (LTI) systems. The model reduction procedure consists of two steps: the computation of a reduced basis, and the projection of the governing partial differential equations (PDEs) onto this reduced basis. Two kinds of reduced bases are considered: the proper orthogonal decomposition (POD) basis and the balanced truncation basis. The projection step of the model reduction can be done in two ways: via continuous projection or via discrete projection. First, an approach for building energy-stable Galerkin ROMs for linear hyperbolic or incompletely parabolic systems of PDEs using continuous projection is proposed. The idea is to apply to the set of PDEs a transformation induced by the Lyapunov function for the system, and to build the ROM in the transformed variables. The resulting ROM will be energy-stable for any choice of reduced basis. It is shown that, for many PDE systems, the desired transformation is induced by a special weighted L2 inner product, termed the %E2%80%9Csymmetry inner product%E2%80%9D. Attention is then turned to building energy-stable ROMs via discrete projection. A discrete counterpart of the continuous symmetry inner product, a weighted L2 inner product termed the %E2%80%9CLyapunov inner product%E2%80%9D, is derived. The weighting matrix that defines the Lyapunov inner product can be computed in a black-box fashion for a stable LTI system arising from the discretization of a system of PDEs in space. It is shown that a ROM constructed via discrete projection using the Lyapunov inner product will be energy-stable for any choice of reduced basis. Connections between the Lyapunov inner product and the inner product induced by the balanced truncation algorithm are made. Comparisons are also made between the symmetry inner product and the Lyapunov inner product. The performance of ROMs constructed

10. Higgs sector of the supersymmetric reduced 331 model

Ferreira, J. G., Jr.; Pires, C. A. de S.; da Silva, P. S. Rodrigues; Sampieri, A.

2013-11-01

A supersymmetric version of the recently proposed reduced minimal 331 model is considered and its Higgs sector is investigated. We focus on the mass spectrum of the lightest scalars of the model. We show that the Higgs mass of 125 GeV requires substantial radiative corrections. However, stops may develop small mixing and must have a mass around TeV. Moreover, some soft supersymmetry breaking terms may lie at the electroweak scale, which alleviates some tension concerning the fine-tuning of the related parameters. The lightest doubly charged scalar may have a mass of around a few hundreds of GeV, which can be probed at the LHC, while the remaining scalars of the model have masses at the TeV scale.

11. D-dimensional torus as compact manifold and Kaluza-Klein cosmological model.

Srivastava, S. K.

1992-09-01

Singularity-free solutions of higher-dimensional Einstein field equations are obtained in the background of M4×TD manifold (M4 is a usual four-dimensional Friedmann- Robertson-Walker model and TD is a D-dimensional torus). Moreover, through dimensional reduction and one-loop quantum correction to scalar field, time-dependent cosmological constant Λ, effective gravitational constant Geff, and a fine-structure constant e/4π are derived in the effective four-dimensional theory using solutions of Einstein's equations. It is found that at late times Λ ≍ 0.

12. Three-dimensional modeling of the human fallopian tube fimbriae

PubMed Central

Eddie, Sharon L.; Quartuccio, Suzanne M.; Zhu, Jie; Shepherd, Jessica A.; Kothari, Rajul; Kim, J. Julie; Woodruff, Teresa K.; Burdette, Joanna E.

2015-01-01

Objective Ovarian cancer is the most lethal gynecological malignancy that affects women. Recent data suggests the disease may originate in the fallopian fimbriae; however, the anatomical origin of ovarian carcinogenesis remains unclear. This is largely driven by our lack of knowledge regarding the structure and function of normal fimbriae and the relative paucity of models that accurately recapitulate the in vivo fallopian tube. Therefore, a human three-dimensional (3D) culture system was developed to examine the role of the fallopian fimbriae in serous tumorigenesis. Methods Alginate matrix was utilized to support human fallopian fimbriae ex vivo. Fimbriae were cultured with factors hypothesized to contribute to carcinogenesis, namely; H2O2 (1mM) a mimetic of oxidative stress, insulin (5 µg/ml) to stimulate glycolysis, and estradiol (E2, 10nM) which peaks before ovulation. Cultures were evaluated for changes in proliferation and p53 expression, criteria utilized to identify potential precursor lesions. Further, secretory factors were assessed after treatment with E2 to identify if steroid signaling induces a pro-tumorigenic microenvironment. Results 3D fimbriae cultures maintained normal tissue architecture up to 7 days, retaining both epithelial subtypes. Treatment of cultures with H2O2 or insulin significantly induced proliferation. However, p53 stabilization was unaffected by any particular treatment, although was induced by ex vivo culturing. Moreover, E2-alone treatment significantly induced its canonical target PR and expression of IL8, a factor linked to poor outcome. Conclusions 3D alginate cultures of human fallopian fimbriae provide an important microphysicological model, which can be further utilized to investigate serous tumorigenesis originating from the fallopian tube. PMID:25527363

13. Reduced late rectal mucosal changes after prostate three-dimensional conformal radiotherapy with endorectal balloon as observed in repeated endoscopy

SciTech Connect

Lin, Emile van . E-mail: E.vanLin@rther.umcn.nl; Kristinsson, Jon; Philippens, Marielle E.P.; Jong, Dirk J. de; Vight, Lisette P. van der; Kaanders, Johannes; Leer, Jan Willem; Visser, Andries G.

2007-03-01

Purpose: The aim of this study was to investigate prospectively the rectal wall (Rwall) spatial dose distribution, toxicity, and mucosal changes after prostate cancer radiotherapy with or without an endorectal balloon (ERB). Methods and Materials: A total of 24 patients with ERB and 24 without ERB (No-ERB) were treated with three-dimensional conformal radiotherapy (3D-CRT) to a dose of 67.5 Gy. The Rwall was divided into 16 mucosal areas and Rwall dose surface maps were constructed. After 3 months, 6 months, 1 year, and 2 years a rectosigmoidoscopy was performed, and each mucosal area was scored on telangiectasia, congestion, ulceration, stricture, and necrosis. Late rectal toxicity was correlated with the endoscopic findings. Results: The ERB significantly reduced the Rwall volume exposed to doses >40 Gy. Late rectal toxicity (grade {>=}1, including excess of bowel movements and slight rectal discharge) was reduced significantly in the ERB group. A total of 146 endoscopies and 2,336 mucosal areas were analyzed. Telangiectases were most frequently seen and appeared after 6 months. At 1 and 2 years, significantly less high-grade telangiectasia (T 2-3) was observed in the ERB group at the lateral and posterior part of the Rwall. In mucosal areas exposed to doses >40 Gy, less high-grade telangiectases (T 2-3) were seen in the ERB group compared with the No-ERB group. Conclusions: An ERB reduced the Rwall volume exposed to doses >40 Gy, resulting in reduction of late rectal mucosal changes and reduced late rectal toxicity. Although further analysis is needed, these data suggest an ERB-induced increased tolerance for late Rwall damage.

14. Distributed organization of a brain microcircuit analyzed by three-dimensional modeling: the olfactory bulb

PubMed Central

Migliore, Michele; Cavarretta, Francesco; Hines, Michael L.; Shepherd, Gordon M.

2014-01-01

The functional consequences of the laminar organization observed in cortical systems cannot be easily studied using standard experimental techniques, abstract theoretical representations, or dimensionally reduced models built from scratch. To solve this problem we have developed a full implementation of an olfactory bulb microcircuit using realistic three-dimensional (3D) inputs, cell morphologies, and network connectivity. The results provide new insights into the relations between the functional properties of individual cells and the networks in which they are embedded. To our knowledge, this is the first model of the mitral-granule cell network to include a realistic representation of the experimentally-recorded complex spatial patterns elicited in the glomerular layer (GL) by natural odor stimulation. Although the olfactory bulb, due to its organization, has unique advantages with respect to other brain systems, the method is completely general, and can be integrated with more general approaches to other systems. The model makes experimentally testable predictions on distributed processing and on the differential backpropagation of somatic action potentials in each lateral dendrite following odor learning, providing a powerful 3D framework for investigating the functions of brain microcircuits. PMID:24808855

15. An ice sheet model of reduced complexity for paleoclimate studies

Neff, Basil; Born, Andreas; Stocker, Thomas F.

2016-04-01

IceBern2D is a vertically integrated ice sheet model to investigate the ice distribution on long timescales under different climatic conditions. It is forced by simulated fields of surface temperature and precipitation of the Last Glacial Maximum and present-day climate from a comprehensive climate model. This constant forcing is adjusted to changes in ice elevation. Due to its reduced complexity and computational efficiency, the model is well suited for extensive sensitivity studies and ensemble simulations on extensive temporal and spatial scales. It shows good quantitative agreement with standardized benchmarks on an artificial domain (EISMINT). Present-day and Last Glacial Maximum ice distributions in the Northern Hemisphere are also simulated with good agreement. Glacial ice volume in Eurasia is underestimated due to the lack of ice shelves in our model. The efficiency of the model is utilized by running an ensemble of 400 simulations with perturbed model parameters and two different estimates of the climate at the Last Glacial Maximum. The sensitivity to the imposed climate boundary conditions and the positive degree-day factor β, i.e., the surface mass balance, outweighs the influence of parameters that disturb the flow of ice. This justifies the use of simplified dynamics as a means to achieve computational efficiency for simulations that cover several glacial cycles. Hysteresis simulations over 5 million years illustrate the stability of the simulated ice sheets to variations in surface air temperature.

16. Reduced Uterine Perfusion Pressure (RUPP) Model of Preeclampsia in Mice

PubMed Central

Fushima, Tomofumi; Sekimoto, Akiyo; Minato, Takahiro; Ito, Takuya; Oe, Yuji; Kisu, Kiyomi; Sato, Emiko; Funamoto, Kenichi; Hayase, Toshiyuki; Kimura, Yoshitaka; Ito, Sadayoshi; Sato, Hiroshi; Takahashi, Nobuyuki

2016-01-01

Preeclampsia (PE) is a pregnancy-induced hypertension with proteinuria that typically develops after 20 weeks of gestation. A reduction in uterine blood flow causes placental ischemia and placental release of anti-angiogenic factors such as sFlt-1 followed by PE. Although the reduced uterine perfusion pressure (RUPP) model is widely used in rats, investigating the role of genes on PE using genetically engineered animals has been problematic because it has been difficult to make a useful RUPP model in mice. To establish a RUPP model of PE in mice, we bilaterally ligated ovarian vessels distal to ovarian branches, uterine vessels, or both in ICR-strain mice at 14.5 days post coitum (dpc). Consequently, these mice had elevated BP, increased urinary albumin excretion, severe endotheliosis, and mesangial expansion. They also had an increased incidence of miscarriage and premature delivery. Embryonic weight at 18.5 dpc was significantly lower than that in sham mice. The closer to the ligation site the embryos were, the higher the resorption rate and the lower the embryonic weight. The phenotype was more severe in the order of ligation at the ovarian vessels < uterine vessels < both. Unlike the RUPP models described in the literature, this model did not constrict the abdominal aorta, which allowed BP to be measured with a tail cuff. This novel RUPP model in mice should be useful for investigating the pathogenesis of PE in genetically engineered mice and for evaluating new therapies for PE. PMID:27187738

17. Experimental investigation of an aeroacoustic feedback mechanism on a two-dimensional side mirror model

Werner, M. J.; Würz, W.; Krämer, E.

2017-01-01

The tonal self-noise emission of a two-dimensional blunt-body side mirror model is investigated experimentally in order to characterize the underlying source mechanism. The two-dimensional side mirror design is closely related to an automotive side mirror model1

18. A two-state hysteresis model from high-dimensional friction

PubMed Central

Biswas, Saurabh; Chatterjee, Anindya

2015-01-01

In prior work (Biswas & Chatterjee 2014 Proc. R. Soc. A 470, 20130817 (doi:10.1098/rspa.2013.0817)), we developed a six-state hysteresis model from a high-dimensional frictional system. Here, we use a more intuitively appealing frictional system that resembles one studied earlier by Iwan. The basis functions now have simple analytical description. The number of states required decreases further, from six to the theoretical minimum of two. The number of fitted parameters is reduced by an order of magnitude, to just six. An explicit and faster numerical solution method is developed. Parameter fitting to match different specified hysteresis loops is demonstrated. In summary, a new two-state model of hysteresis is presented that is ready for practical implementation. Essential Matlab code is provided. PMID:26587279

19. A two-state hysteresis model from high-dimensional friction.

PubMed

Biswas, Saurabh; Chatterjee, Anindya

2015-07-01

In prior work (Biswas & Chatterjee 2014 Proc. R. Soc. A 470, 20130817 (doi:10.1098/rspa.2013.0817)), we developed a six-state hysteresis model from a high-dimensional frictional system. Here, we use a more intuitively appealing frictional system that resembles one studied earlier by Iwan. The basis functions now have simple analytical description. The number of states required decreases further, from six to the theoretical minimum of two. The number of fitted parameters is reduced by an order of magnitude, to just six. An explicit and faster numerical solution method is developed. Parameter fitting to match different specified hysteresis loops is demonstrated. In summary, a new two-state model of hysteresis is presented that is ready for practical implementation. Essential Matlab code is provided.

20. Linear surface roughness growth and flow smoothening in a three-dimensional biofilm model

2013-09-01

The sessile microbial communities known as biofilms exhibit varying architectures as environmental factors are varied, which for immersed biofilms includes the shear rate of the surrounding flow. Here we modify an established agent-based biofilm model to include affine flow and employ it to analyze the growth of surface roughness of single-species, three-dimensional biofilms. We find linear growth laws for surface geometry in both horizontal and vertical directions and measure the thickness of the active surface layer, which is shown to anticorrelate with roughness. Flow is shown to monotonically reduce surface roughness without affecting the thickness of the active layer. We argue that the rapid roughening is due to nonlocal surface interactions mediated by the nutrient field, which are curtailed when advection competes with diffusion. We further argue the need for simplified models to elucidate the underlying mechanisms coupling flow to growth.

1. A Three-Dimensional Cell Culture Model To Study Enterovirus Infection of Polarized Intestinal Epithelial Cells

PubMed Central

Drummond, Coyne G.

2015-01-01

ABSTRACT Despite serving as the primary entry portal for coxsackievirus B (CVB), little is known about CVB infection of the intestinal epithelium, owing at least in part to the lack of suitable in vivo models and the inability of cultured cells to recapitulate the complexity and structure associated with the gastrointestinal (GI) tract. Here, we report on the development of a three-dimensional (3-D) organotypic cell culture model of Caco-2 cells to model CVB infection of the gastrointestinal epithelium. We show that Caco-2 cells grown in 3-D using the rotating wall vessel (RWV) bioreactor recapitulate many of the properties of the intestinal epithelium, including the formation of well-developed tight junctions, apical-basolateral polarity, brush borders, and multicellular complexity. In addition, transcriptome analyses using transcriptome sequencing (RNA-Seq) revealed the induction of a number of genes associated with intestinal epithelial differentiation and/or intestinal processes in vivo when Caco-2 cells were cultured in 3-D. Applying this model to CVB infection, we found that although the levels of intracellular virus production were similar in two-dimensional (2-D) and 3-D Caco-2 cell cultures, the release of infectious CVB was enhanced in 3-D cultures at early stages of infection. Unlike CVB, the replication of poliovirus (PV) was significantly reduced in 3-D Caco-2 cell cultures. Collectively, our studies show that Caco-2 cells grown in 3-D using the RWV bioreactor provide a cell culture model that structurally and transcriptionally represents key aspects of cells in the human GI tract and can thus be used to expand our understanding of enterovirus-host interactions in intestinal epithelial cells. IMPORTANCE Coxsackievirus B (CVB), a member of the enterovirus family of RNA viruses, is associated with meningitis, pericarditis, diabetes, dilated cardiomyopathy, and myocarditis, among other pathologies. CVB is transmitted via the fecal-oral route and

2. Two-dimensional particle simulation of a perpendicular shock with a shock rest frame model

Yamao, M.; Umeda, T.; Yamazaki, R.; Ogino, T.

2009-12-01

A two-dimensional shock-rest-frame model for particle simulations is developed. This model does not need a huge simulation domain in the propagation direction of the shock wave as previous simulation models do. We performed a two-dimensional full particle simulation of a perpendicular collisionless shock and compared with one-dimensional simulation results. In both simulations, the excited shock waves show almost the same time evolution, periodically reforming at the timescale of the downstream ion gyro-period. In the two-dimensional simulation, electrons are thermalized along the transverse magnetic field, and electromagnetic whistler mode waves are excited in the shock front region. The amplitude of the exited whistler mode waves is not so strong and the shock magnetic field keeps almost one-dimensional structure. The two-dimensional simulation also shows the absence of electrostatic solitary structures in the shock foot region, which is necessary for electron shock surfing acceleration.

3. Bayesian Inference of High-Dimensional Dynamical Ocean Models

Lin, J.; Lermusiaux, P. F. J.; Lolla, S. V. T.; Gupta, A.; Haley, P. J., Jr.

2015-12-01

This presentation addresses a holistic set of challenges in high-dimension ocean Bayesian nonlinear estimation: i) predict the probability distribution functions (pdfs) of large nonlinear dynamical systems using stochastic partial differential equations (PDEs); ii) assimilate data using Bayes' law with these pdfs; iii) predict the future data that optimally reduce uncertainties; and (iv) rank the known and learn the new model formulations themselves. Overall, we allow the joint inference of the state, equations, geometry, boundary conditions and initial conditions of dynamical models. Examples are provided for time-dependent fluid and ocean flows, including cavity, double-gyre and Strait flows with jets and eddies. The Bayesian model inference, based on limited observations, is illustrated first by the estimation of obstacle shapes and positions in fluid flows. Next, the Bayesian inference of biogeochemical reaction equations and of their states and parameters is presented, illustrating how PDE-based machine learning can rigorously guide the selection and discovery of complex ecosystem models. Finally, the inference of multiscale bottom gravity current dynamics is illustrated, motivated in part by classic overflows and dense water formation sites and their relevance to climate monitoring and dynamics. This is joint work with our MSEAS group at MIT.

4. Reduced-order autoregressive modeling for center-frequency estimation.

PubMed

Kuc, R; Li, H

1985-07-01

The center frequency of a narrowband, discrete-time random process, such as a reflected ultrasound signal, is estimated from the parameter values of a reduced, second-order autoregressive (AR) model. This approach is proposed as a fast estimator that performs better than the zero-crossing count estimate for determining the center-frequency location. The parameter values are obtained through a linear prediction analysis on the correlated random process, which in this case is identical to the maximum entropy method for spectral estimation. The frequency of the maximum of the second-order model spectrum is determined from these parameters and is used as the center-frequency estimate. This estimate can be computed very efficiently, requiring only the estimates of the first three terms of the process autocorrelation function. The bias and variance properties of this estimator are determined for a random process having a Gaussian-shaped spectrum and compared to those of the ideal FM frequency discriminator, zero-crossing count estimator and a correlation estimator. It is found that the variance values for the reduced-order AR model center-frequency estimator lie between those for the ideal FM frequency discriminator and the zero-crossing count estimator.

5. Use of greatly-reduced gas flows in flow-modulated comprehensive two-dimensional gas chromatography-mass spectrometry.

PubMed

Tranchida, Peter Q; Franchina, Flavio A; Dugo, Paola; Mondello, Luigi

2014-09-12

The present research is specifically based on the use of greatly-reduced gas flows, in flow-modulator (FM) comprehensive two-dimensional gas chromatography systems. In particular, focus of the present research is directed to FM devices characterized by an accumulation stage, and a much briefer re-injection step. It has been widely accepted that the operation of such FM systems requires high gas flows (≥20mL/min), to re-inject the gas-phase contents of sample (or accumulation) loops, onto the second column. On the contrary, it will be herein demonstrated that much lower gas flows (≈ 6-8mL/min) can efficiently perform the modulation step of re-injection. The possibility of using such improved operational conditions is given simply by a fine optimization of the processes of accumulation and re-injection. The application of lower gas flows not only means that second-dimension separations are carried out under better analytical conditions, but, even more importantly, greatly reduces problems which arise when using mass spectrometry (i.e., sensitivity and instrumental pumping capacity).

6. Giant perpendicular magnetic anisotropy energies in CoPt thin films: impact of reduced dimensionality and imperfections.

PubMed

Brahimi, Samy; Bouzar, Hamid; Lounis, Samir

2016-12-14

The impact of reduced dimensionality on the magnetic properties of the tetragonal L1 0 CoPt alloy is investigated from ab initio considering several kinds of surface defects. By exploring the dependence of the magnetocrystalline anisotropy energy (MAE) on the thickness of CoPt thin films, we demonstrate the crucial role of the chemical nature of the surface. For instance, Pt-terminated thin films exhibit huge MAEs which can be 1000% larger than those of Co-terminated films. Besides the perfect thin films, we scrutinize the effect of defective surfaces such as stacking faults or anti-sites on the surface layers. Both types of defects reduce considerably the MAE with respect to the one obtained for Pt-terminated thin films. A detailed analysis of the electronic structure of the thin films is provided with a careful comparison to the CoPt bulk case. The behavior of the MAEs is then related to the location of the different virtual bound states utilizing second order perturbation theory.

7. Giant perpendicular magnetic anisotropy energies in CoPt thin films: impact of reduced dimensionality and imperfections

Brahimi, Samy; Bouzar, Hamid; Lounis, Samir

2016-12-01

The impact of reduced dimensionality on the magnetic properties of the tetragonal L1 0 CoPt alloy is investigated from ab initio considering several kinds of surface defects. By exploring the dependence of the magnetocrystalline anisotropy energy (MAE) on the thickness of CoPt thin films, we demonstrate the crucial role of the chemical nature of the surface. For instance, Pt-terminated thin films exhibit huge MAEs which can be 1000% larger than those of Co-terminated films. Besides the perfect thin films, we scrutinize the effect of defective surfaces such as stacking faults or anti-sites on the surface layers. Both types of defects reduce considerably the MAE with respect to the one obtained for Pt-terminated thin films. A detailed analysis of the electronic structure of the thin films is provided with a careful comparison to the CoPt bulk case. The behavior of the MAEs is then related to the location of the different virtual bound states utilizing second order perturbation theory.

8. Three-dimensional modeling of canopy flow in complex terrain

Xu, X.; Yi, C.; Montagnani, L.

2013-12-01

Flows within and just above forest canopy over mountainous terrain are most complicated, which substantially influence the biosphere-atmosphere interaction of mass and energy. Due to the significant spatial variation, canopy flow in complex terrain is poorly understood based on the point-based tower measurement. We employ numerical model integrated with biogenic CO2 process to examine the impacts of topography, canopy structure, and synoptic atmospheric motion on canopy flow and associated CO2 transport in an alpine forest, with special focus on stable nocturnal condition when biogenic CO2 emission is active. Our model prediction is in better agreement with tower measurements when background synoptic wind is present, which leads to better larger-scale mixing, while local slope flow is just thermal-driven in the modeled domain by ignorance of surround mountain-valley. Our results show that large-scale synoptic wind is modified by local slope-canopy flow within and just above canopy. As the synoptic wind is down-slope (Figure 1a), recirculation is formed on the downwind slope with cool air and high accumulation of CO2 in front of tall and dense vegetation. As the synoptic wind is up-slope(Figure 1b), canopy flow at the higher elevation of the slope is in the same direction of synoptic wind, while canopy flow at the lower part of the slope blows down-slope. The upslope wind causes better mixing in the canopy and leads to smaller CO2 accumulation just close to the slope surface. The local down-slope wind (Figure 1c) causes rich and deep CO2 build-up in the downwind direction on the lower slope. Our numerical performance has demonstrated that three-dimensional CFD approach is a useful tool to understanding relationships between tower-point measurements and surrounding's field distributions. Acknowledgement: This research was supported by NSF Grants ATM-0930015, CNS-0958379 & CNS-0855217, PSC-CUNY ENHC-42-64 & CUNY HPCC. Figure 1 CO2 distribution within and just above

9. A THREE-DIMENSIONAL MODEL ASSESSMENT OF THE GLOBAL DISTRIBUTION OF HEXACHLOROBENZENE

EPA Science Inventory

The distributions of persistent organic pollutants (POPs) in the global environment have been studied typically with box/fugacity models with simplified treatments of atmospheric transport processes1. Such models are incapable of simulating the complex three-dimensional mechanis...

10. Reduced models of atmospheric low-frequency variability: Parameter estimation and comparative performance

Strounine, K.; Kravtsov, S.; Kondrashov, D.; Ghil, M.

2010-02-01

Low-frequency variability (LFV) of the atmosphere refers to its behavior on time scales of 10-100 days, longer than the life cycle of a mid-latitude cyclone but shorter than a season. This behavior is still poorly understood and hard to predict. The present study compares various model reduction strategies that help in deriving simplified models of LFV. Three distinct strategies are applied here to reduce a fairly realistic, high-dimensional, quasi-geostrophic, 3-level (QG3) atmospheric model to lower dimensions: (i) an empirical-dynamical method, which retains only a few components in the projection of the full QG3 model equations onto a specified basis, and finds the linear deterministic and the stochastic corrections empirically as in Selten (1995) [5]; (ii) a purely dynamics-based technique, employing the stochastic mode reduction strategy of Majda et al. (2001) [62]; and (iii) a purely empirical, multi-level regression procedure, which specifies the functional form of the reduced model and finds the model coefficients by multiple polynomial regression as in Kravtsov et al. (2005) [3]. The empirical-dynamical and dynamical reduced models were further improved by sequential parameter estimation and benchmarked against multi-level regression models; the extended Kalman filter was used for the parameter estimation. Overall, the reduced models perform better when more statistical information is used in the model construction. Thus, the purely empirical stochastic models with quadratic nonlinearity and additive noise reproduce very well the linear properties of the full QG3 model’s LFV, i.e. its autocorrelations and spectra, as well as the nonlinear properties, i.e. the persistent flow regimes that induce non-Gaussian features in the model’s probability density function. The empirical-dynamical models capture the basic statistical properties of the full model’s LFV, such as the variance and integral correlation time scales of the leading LFV modes, as well as

11. A Reduced Form Model for Ozone Based on Two Decades of ...

EPA Pesticide Factsheets

A Reduced Form Model (RFM) is a mathematical relationship between the inputs and outputs of an air quality model, permitting estimation of additional modeling without costly new regional-scale simulations. A 21-year Community Multiscale Air Quality (CMAQ) simulation for the continental United States provided the basis for the RFM developed in this study. Predictors included the principal component scores (PCS) of emissions and meteorological variables, while the predictand was the monthly mean of daily maximum 8-hour CMAQ ozone for the ozone season at each model grid. The PCS form an orthogonal basis for RFM inputs. A few PCS incorporate most of the variability of emissions and meteorology, thereby reducing the dimensionality of the source-receptor problem. Stochastic kriging was used to estimate the model. The RFM was used to separate the effects of emissions and meteorology on ozone concentrations. by running the RFM with emissions constant (ozone dependent on meteorology), or constant meteorology (ozone dependent on emissions). Years with ozone-conducive meteorology were identified, and meteorological variables best explaining meteorology-dependent ozone were identified. Meteorology accounted for 19% to 55% of ozone variability in the eastern US, and 39% to 92% in the western US. Temporal trends estimated for original CMAQ ozone data and emission-dependent ozone were mostly negative, but the confidence intervals for emission-dependent ozone are much

12. Three-Dimensional Analysis and Modeling of a Wankel Engine

NASA Technical Reports Server (NTRS)

Raju, M. S.; Willis, E. A.

1991-01-01

A new computer code, AGNI-3D, has been developed for the modeling of combustion, spray, and flow properties in a stratified-charge rotary engine (SCRE). The mathematical and numerical details of the new code are described by the first author in a separate NASA publication. The solution procedure is based on an Eulerian-Lagrangian approach where the unsteady, three-dimensional Navier-Stokes equations for a perfect gas-mixture with variable properties are solved in generalized, Eulerian coordinates on a moving grid by making use of an implicit finite-volume, Steger-Warming flux vector splitting scheme. The liquid-phase equations are solved in Lagrangian coordinates. The engine configuration studied was similar to existing rotary engine flow-visualization and hot-firing test rigs. The results of limited test cases indicate a good degree of qualitative agreement between the predicted and measured pressures. It is conjectured that the impulsive nature of the torque generated by the observed pressure nonuniformity may be one of the mechanisms responsible for the excessive wear of the timing gears observed during the early stages of the rotary combustion engine (RCE) development. It was identified that the turbulence intensities near top-dead-center were dominated by the compression process and only slightly influenced by the intake and exhaust processes. Slow mixing resulting from small turbulence intensities within the rotor pocket and also from a lack of formation of any significant recirculation regions within the rotor pocket were identified as the major factors leading to incomplete combustion. Detailed flowfield results during exhaust and intake, fuel injection, fuel vaporization, combustion, mixing and expansion processes are also presented. The numerical procedure is very efficient as it takes 7 to 10 CPU hours on a CRAY Y-MP for one entire engine cycle when the computations are performed over a 31 x16 x 20 grid.

13. Hagedorn instability in dimensionally reduced large-N gauge theories as Gregory-Laflamme and Rayleigh-Plateau instabilities.

PubMed

Azuma, Takehiro; Morita, Takeshi; Takeuchi, Shingo

2014-08-29

It is expected that the Gregory-Laflamme (GL) instability in the black string in gravity is related to the Rayleigh-Plateau instability in fluid mechanics. Especially, the orders of the phase transitions associated with these instabilities depend on the number of the transverse space dimensions, and they are of first and second order below and above the critical dimension. Through the gauge-gravity correspondence, the GL instability is conjectured to be thermodynamically related to the Hagedorn instability in large-N gauge theories, and it leads to a prediction that the order of the confinement-deconfinement transition associated with the Hagedorn instability may depend on the transverse dimension. We test this conjecture in the D-dimensional bosonic D0-brane model using numerical simulation and the 1/D expansion, and confirm the expected D dependence.

14. Kinetic simulations and reduced modeling of longitudinal sideband instabilities in non-linear electron plasma waves

SciTech Connect

Brunner, S.; Berger, R. L.; Cohen, B. I.; Hausammann, L.; Valeo, E. J.

2014-10-01

Kinetic Vlasov simulations of one-dimensional finite amplitude Electron Plasma Waves are performed in a multi-wavelength long system. A systematic study of the most unstable linear sideband mode, in particular its growth rate γ and quasi- wavenumber δk, is carried out by scanning the amplitude and wavenumber of the initial wave. Simulation results are successfully compared against numerical and analytical solutions to the reduced model by Kruer et al. [Phys. Rev. Lett. 23, 838 (1969)] for the Trapped Particle Instability (TPI). A model recently suggested by Dodin et al. [Phys. Rev. Lett. 110, 215006 (2013)], which in addition to the TPI accounts for the so-called Negative Mass Instability because of a more detailed representation of the trapped particle dynamics, is also studied and compared with simulations.

15. Simulation of reactive nanolaminates using reduced models: III. Ingredients for a general multidimensional formulation

SciTech Connect

Salloum, Maher; Knio, Omar M.

2010-06-15

A transient multidimensional reduced model is constructed for the simulation of reaction fronts in Ni/Al multilayers. The formulation is based on the generalization of earlier methodologies developed for quasi-1D axial and normal propagation, specifically by adapting the reduced formalism for atomic mixing and heat release. This approach enables us to focus on resolving the thermal front structure, whose evolution is governed by thermal diffusion and heat release. A mixed integration scheme is used for this purpose, combining an extended-stability, Runge-Kutta-Chebychev (RKC) integration of the diffusion term with exact treatment of the chemical source term. Thus, a detailed description of atomic mixing within individual layers is avoided, which enables transient modeling of the reduced equations of motion in multiple dimensions. Two-dimensional simulations are first conducted of front propagation in composites combining two bilayer periods. Results are compared with the experimental measurements of Knepper et al., which reveal that the reaction velocity can depend significantly on layering frequency. The comparison indicates that, using a concentration-dependent conductivity model, the transient 2D computations can reasonably reproduce the experimental behavior. Additional tests are performed based on 3D computations of surface initiated reactions. Comparison of computed predictions with laser ignition measurements indicates that the computations provide reasonable estimates of ignition thresholds. A detailed discussion is finally provided of potential generalizations and associated hurdles. (author)

16. User's manual for master: Modeling of aerodynamic surfaces by 3-dimensional explicit representation. [input to three dimensional computational fluid dynamics

NASA Technical Reports Server (NTRS)

Gibson, S. G.

1983-01-01

A system of computer programs was developed to model general three dimensional surfaces. Surfaces are modeled as sets of parametric bicubic patches. There are also capabilities to transform coordinates, to compute mesh/surface intersection normals, and to format input data for a transonic potential flow analysis. A graphical display of surface models and intersection normals is available. There are additional capabilities to regulate point spacing on input curves and to compute surface/surface intersection curves. Input and output data formats are described; detailed suggestions are given for user input. Instructions for execution are given, and examples are shown.

17. Coupled Models and Parallel Simulations for Three-Dimensional Full-Stokes Ice Sheet Modeling

SciTech Connect

Zhang, Huai; Ju, Lili

2011-01-01

A three-dimensional full-Stokes computational model is considered for determining the dynamics, temperature, and thickness of ice sheets. The governing thermomechanical equations consist of the three-dimensional full-Stokes system with nonlinear rheology for the momentum, an advective-diffusion energy equation for temperature evolution, and a mass conservation equation for icethickness changes. Here, we discuss the variable resolution meshes, the finite element discretizations, and the parallel algorithms employed by the model components. The solvers are integrated through a well-designed coupler for the exchange of parametric data between components. The discretization utilizes high-quality, variable-resolution centroidal Voronoi Delaunay triangulation meshing and existing parallel solvers. We demonstrate the gridding technology, discretization schemes, and the efficiency and scalability of the parallel solvers through computational experiments using both simplified geometries arising from benchmark test problems and a realistic Greenland ice sheet geometry.

18. Optimizing Crawler4j using MapReduce Programming Model

Siddesh, G. M.; Suresh, Kavya; Madhuri, K. Y.; Nijagal, Madhushree; Rakshitha, B. R.; Srinivasa, K. G.

2016-08-01

World wide web is a decentralized system that consists of a repository of information on the basis of web pages. These web pages act as a source of information or data in the present analytics world. Web crawlers are used for extracting useful information from web pages for different purposes. Firstly, it is used in web search engines where the web pages are indexed to form a corpus of information and allows the users to query on the web pages. Secondly, it is used for web archiving where the web pages are stored for later analysis phases. Thirdly, it can be used for web mining where the web pages are monitored for copyright purposes. The amount of information processed by the web crawler needs to be improved by using the capabilities of modern parallel processing technologies. In order to solve the problem of parallelism and the throughput of crawling this work proposes to optimize the Crawler4j using the Hadoop MapReduce programming model by parallelizing the processing of large input data. Crawler4j is a web crawler that retrieves useful information about the pages that it visits. The crawler Crawler4j coupled with data and computational parallelism of Hadoop MapReduce programming model improves the throughput and accuracy of web crawling. The experimental results demonstrate that the proposed solution achieves significant improvements with respect to performance and throughput. Hence the proposed approach intends to carve out a new methodology towards optimizing web crawling by achieving significant performance gain.

19. Control-oriented reduced order modeling of dipteran flapping flight

Faruque, Imraan

Flying insects achieve flight stabilization and control in a manner that requires only small, specialized neural structures to perform the essential components of sensing and feedback, achieving unparalleled levels of robust aerobatic flight on limited computational resources. An engineering mechanism to replicate these control strategies could provide a dramatic increase in the mobility of small scale aerial robotics, but a formal investigation has not yet yielded tools that both quantitatively and intuitively explain flapping wing flight as an "input-output" relationship. This work uses experimental and simulated measurements of insect flight to create reduced order flight dynamics models. The framework presented here creates models that are relevant for the study of control properties. The work begins with automated measurement of insect wing motions in free flight, which are then used to calculate flight forces via an empirically-derived aerodynamics model. When paired with rigid body dynamics and experimentally measured state feedback, both the bare airframe and closed loop systems may be analyzed using frequency domain system identification. Flight dynamics models describing maneuvering about hover and cruise conditions are presented for example fruit flies (Drosophila melanogaster) and blowflies (Calliphorids). The results show that biologically measured feedback paths are appropriate for flight stabilization and sexual dimorphism is only a minor factor in flight dynamics. A method of ranking kinematic control inputs to maximize maneuverability is also presented, showing that the volume of reachable configurations in state space can be dramatically increased due to appropriate choice of kinematic inputs.

20. Reduced Order Modeling Of Multiphase Flow In Fractured Formation

Pau, G. S. H.; Finsterle, S.; Zhang, Y.

2015-12-01

The success of a thermal water flood for enhanced oil recovery (EOR) depends on (1) accurate modeling of the nonlinear multiphase flow processes, and (2) detailed representation of the geometrical and hydraulic details of the fracture network. The resulting high-resolution numerical model is typically computationally demanding. Here, we compare two methods for approximating high-resolution solutions: the Proper Orthogonal Decomposition (POD) Mapping method, and the POD-Gaussian Process Regression (GPR) method. The POD Mapping method utilizes an efficient low-resolution model for prediction after training a reduced order model (ROM) using high- and low-resolution solutions. On the other hand, the POD-GPR method constructs a statistical ROM that directly maps the input parameters to the high-resolution solutions. The approximation error can be quantified either through an error estimator (POD Mapping method) or a variance estimate (POD-GPR method). Initial results indicate that the POD Mapping method is more accurate than the POD-GPR method when the same set of training data is used. This work was supported, in part, by the U.S. Dept. of Energy under Contract No. DE-AC02-05CH11231.

1. Informing Investment to Reduce Inequalities: A Modelling Approach

PubMed Central

McAuley, Andrew; Denny, Cheryl; Taulbut, Martin; Mitchell, Rory; Fischbacher, Colin; Graham, Barbara; Grant, Ian; O’Hagan, Paul; McAllister, David; McCartney, Gerry

2016-01-01

Background Reducing health inequalities is an important policy objective but there is limited quantitative information about the impact of specific interventions. Objectives To provide estimates of the impact of a range of interventions on health and health inequalities. Materials and Methods Literature reviews were conducted to identify the best evidence linking interventions to mortality and hospital admissions. We examined interventions across the determinants of health: a ‘living wage’; changes to benefits, taxation and employment; active travel; tobacco taxation; smoking cessation, alcohol brief interventions, and weight management services. A model was developed to estimate mortality and years of life lost (YLL) in intervention and comparison populations over a 20-year time period following interventions delivered only in the first year. We estimated changes in inequalities using the relative index of inequality (RII). Results Introduction of a ‘living wage’ generated the largest beneficial health impact, with modest reductions in health inequalities. Benefits increases had modest positive impacts on health and health inequalities. Income tax increases had negative impacts on population health but reduced inequalities, while council tax increases worsened both health and health inequalities. Active travel increases had minimally positive effects on population health but widened health inequalities. Increases in employment reduced inequalities only when targeted to the most deprived groups. Tobacco taxation had modestly positive impacts on health but little impact on health inequalities. Alcohol brief interventions had modestly positive impacts on health and health inequalities only when strongly socially targeted, while smoking cessation and weight-reduction programmes had minimal impacts on health and health inequalities even when socially targeted. Conclusions Interventions have markedly different effects on mortality, hospitalisations and

2. Optimal spatiotemporal reduced order modeling for nonlinear dynamical systems

LaBryer, Allen

Proposed in this dissertation is a novel reduced order modeling (ROM) framework called optimal spatiotemporal reduced order modeling (OPSTROM) for nonlinear dynamical systems. The OPSTROM approach is a data-driven methodology for the synthesis of multiscale reduced order models (ROMs) which can be used to enhance the efficiency and reliability of under-resolved simulations for nonlinear dynamical systems. In the context of nonlinear continuum dynamics, the OPSTROM approach relies on the concept of embedding subgrid-scale models into the governing equations in order to account for the effects due to unresolved spatial and temporal scales. Traditional ROMs neglect these effects, whereas most other multiscale ROMs account for these effects in ways that are inconsistent with the underlying spatiotemporal statistical structure of the nonlinear dynamical system. The OPSTROM framework presented in this dissertation begins with a general system of partial differential equations, which are modified for an under-resolved simulation in space and time with an arbitrary discretization scheme. Basic filtering concepts are used to demonstrate the manner in which residual terms, representing subgrid-scale dynamics, arise with a coarse computational grid. Models for these residual terms are then developed by accounting for the underlying spatiotemporal statistical structure in a consistent manner. These subgrid-scale models are designed to provide closure by accounting for the dynamic interactions between spatiotemporal macroscales and microscales which are otherwise neglected in a ROM. For a given resolution, the predictions obtained with the modified system of equations are optimal (in a mean-square sense) as the subgrid-scale models are based upon principles of mean-square error minimization, conditional expectations and stochastic estimation. Methods are suggested for efficient model construction, appraisal, error measure, and implementation with a couple of well-known time

3. Reducing long-term remedial costs by transport modeling optimization.

PubMed

Becker, David; Minsker, Barbara; Greenwald, Robert; Zhang, Yan; Harre, Karla; Yager, Kathleen; Zheng, Chunmiao; Peralta, Richard

2006-01-01

The Department of Defense (DoD) Environmental Security Technology Certification Program and the Environmental Protection Agency sponsored a project to evaluate the benefits and utility of contaminant transport simulation-optimization algorithms against traditional (trial and error) modeling approaches. Three pump-and-treat facilities operated by the DoD were selected for inclusion in the project. Three optimization formulations were developed for each facility and solved independently by three modeling teams (two using simulation-optimization algorithms and one applying trial-and-error methods). The results clearly indicate that simulation-optimization methods are able to search a wider range of well locations and flow rates and identify better solutions than current trial-and-error approaches. The solutions found were 5% to 50% better than those obtained using trial-and-error (measured using optimal objective function values), with an average improvement of approximately 20%. This translated into potential savings ranging from 600,000 dollars to 10,000,000 dollars for the three sites. In nearly all cases, the cost savings easily outweighed the costs of the optimization. To reduce computational requirements, in some cases the simulation-optimization groups applied multiple mathematical algorithms, solved a series of modified subproblems, and/or fit "meta-models" such as neural networks or regression models to replace time-consuming simulation models in the optimization algorithm. The optimal solutions did not account for the uncertainties inherent in the modeling process. This project illustrates that transport simulation-optimization techniques are practical for real problems. However, applying the techniques in an efficient manner requires expertise and should involve iterative modification to the formulations based on interim results.

4. Computational technique and performance of Transient Inundation Model for Rivers--2 Dimensional (TRIM2RD) : a depth-averaged two-dimensional flow model

USGS Publications Warehouse

Fulford, Janice M.

2003-01-01

A numerical computer model, Transient Inundation Model for Rivers -- 2 Dimensional (TrimR2D), that solves the two-dimensional depth-averaged flow equations is documented and discussed. The model uses a semi-implicit, semi-Lagrangian finite-difference method. It is a variant of the Trim model and has been used successfully in estuarine environments such as San Francisco Bay. The abilities of the model are documented for three scenarios: uniform depth flows, laboratory dam-break flows, and large-scale riverine flows. The model can start computations from a ?dry? bed and converge to accurate solutions. Inflows are expressed as source terms, which limits the use of the model to sufficiently long reaches where the flow reaches equilibrium with the channel. The data sets used by the investigation demonstrate that the model accurately propagates flood waves through long river reaches and simulates dam breaks with abrupt water-surface changes.

5. Three-dimensional patterns in the Lengyel-Rabai-Epstein model of the chlorine dioxide-iodine-malonic acid reaction

Moore, Peter K.; Horsthemke, Werner

2009-12-01

We present computational solutions to the Lengyel-Rabai-Epstein model in three space dimensions. The results show that three-dimensional patterns exist and that they differ significantly from the two-dimensional patterns. Patterns occur at three locations in the reactor corresponding to peaks in the one-dimensional concentration of the starch tri-iodide concentration. Each pattern possesses its own intrinsic wavelength and is neither striped nor hexagonal, the two types that have been shown to exist in two dimensions. Computations suggest a bifurcation exists as a function of the reactor thickness. Solutions are computed using a high-order adaptive finite element method coupled with a multistep integrator in time. Linear systems generated in the multistep solver are solved using the iterative method GMRES with a Jacobi preconditioner. Matrix storage is reduced by incomplete assembly via thresholding. Preconditioner factorization and matrix-vector multiplication efficiency are enhanced by the use of OPENMP.

6. Three-Dimensional Blood-Brain Barrier Model for in vitro Studies of Neurovascular Pathology

Cho, Hansang; Seo, Ji Hae; Wong, Keith H. K.; Terasaki, Yasukazu; Park, Joseph; Bong, Kiwan; Arai, Ken; Lo, Eng H.; Irimia, Daniel

2015-10-01

Blood-brain barrier (BBB) pathology leads to neurovascular disorders and is an important target for therapies. However, the study of BBB pathology is difficult in the absence of models that are simple and relevant. In vivo animal models are highly relevant, however they are hampered by complex, multi-cellular interactions that are difficult to decouple. In vitro models of BBB are simpler, however they have limited functionality and relevance to disease processes. To address these limitations, we developed a 3-dimensional (3D) model of BBB on a microfluidic platform. We verified the tightness of the BBB by showing its ability to reduce the leakage of dyes and to block the transmigration of immune cells towards chemoattractants. Moreover, we verified the localization at endothelial cell boundaries of ZO-1 and VE-Cadherin, two components of tight and adherens junctions. To validate the functionality of the BBB model, we probed its disruption by neuro-inflammation mediators and ischemic conditions and measured the protective function of antioxidant and ROCK-inhibitor treatments. Overall, our 3D BBB model provides a robust platform, adequate for detailed functional studies of BBB and for the screening of BBB-targeting drugs in neurological diseases.

7. Parameter Optimization of a Box and a Three-Dimensional Ocean Carbon Cycle Model Using the Adjoint Method: What Can We Learn?

Tjiputra, J.; Winguth, A.

2005-12-01

A data assimilation technique is used to optimize marine ecosystem parameters that constraining carbon fluxes in a three-dimensional ocean carbon cycle model. An identical twin experiment is able to produce an a posteriori parameter set with significantly reduced model-data misfit. Error analysis using the Hessian matrix is applied to provide detailed information on the sensitivity of different parameters. Parameters associated with zooplankton grazing and phytoplankton growth reveal to be most sensitive with respect to surface chlorophyll concentration. In order to analyze the sensitivity of these parameters in more detail, biweekly BATS data are compared with a box model as well as with three-dimensional model. Interestingly, when different ocean regions are assimilated separately based on different physical and biogeochemical conditions, regional variation of ecosystem parameters significantly reduces the model-data misfit. Our results also show that certain regions need to have improved ecosystem model formulations in order to reduce the model data-misfit further.

8. Simple parameter estimation for complex models — Testing evolutionary techniques on 3-dimensional biogeochemical ocean models

Mattern, Jann Paul; Edwards, Christopher A.

2017-01-01

Parameter estimation is an important part of numerical modeling and often required when a coupled physical-biogeochemical ocean model is first deployed. However, 3-dimensional ocean model simulations are computationally expensive and models typically contain upwards of 10 parameters suitable for estimation. Hence, manual parameter tuning can be lengthy and cumbersome. Here, we present four easy to implement and flexible parameter estimation techniques and apply them to two 3-dimensional biogeochemical models of different complexities. Based on a Monte Carlo experiment, we first develop a cost function measuring the model-observation misfit based on multiple data types. The parameter estimation techniques are then applied and yield a substantial cost reduction over ∼ 100 simulations. Based on the outcome of multiple replicate experiments, they perform on average better than random, uninformed parameter search but performance declines when more than 40 parameters are estimated together. Our results emphasize the complex cost function structure for biogeochemical parameters and highlight dependencies between different parameters as well as different cost function formulations.

9. A reduced order electrochemical thermal model for lithium ion cells

Gambhire, Priya; Ganesan, Nandhini; Basu, Suman; Hariharan, Krishnan S.; Kolake, Subramanya Mayya; Song, Taewon; Oh, Dukjin; Yeo, Taejung; Doo, Seokgwang

2015-09-01

A reduced order model (ROM) is proposed for accurate prediction of electrochemical and thermal response of lithium ion cells. The order reduction is carried on the coupled partial differential equations (PDE) of the electrochemical thermal model by consistent volume averaging of local heat generation and spatial temperature variation. The model is validated with experimental data for temperatures ranging from 253 K-333 K. It is seen that modification of ROM to account for low electronic conductivity results in accurate voltage estimation of cells with lithium nickel cobalt aluminium oxide (LNCO) cathodes. A detailed parametric sensitivity to operating conditions is provided. The utility of ROM for on-board state estimation is demonstrated by applying to realistic drive cycle protocols such as the Hybrid Pulse Power Characterization (HPPC) and the Urban Dynamometer Driving Schedule (UDDS) data. The electrochemical structure of ROM enables identification of controlling processes, and analysis of HPPC results reveal that Ohmic drop of cathode is controlling at high rates and the electrolyte potential during rest phase. Based on accurate voltage prediction, computational speed and physical insights, it can be concluded that the proposed ROM is an adequate state estimation and a cell design tool.

10. Usefulness Of Three-Dimensional Printing Models for Patients with Stoma Construction

PubMed Central

Tominaga, Tetsuro; Takagi, Katsunori; Takeshita, Hiroaki; Miyamoto, Tomo; Shimoda, Kozue; Matsuo, Ayano; Matsumoto, Keitaro; Hidaka, Shigekazu; Yamasaki, Naoya; Sawai, Terumitsu; Nagayasu, Takeshi

2016-01-01

The use of patient-specific organ models in three-dimensional printing systems could be helpful for the education of patients and medical students. The aim of this study was to clarify whether the use of patient-specific stoma models is helpful for patient education. From January 2014 to September 2014, 5 patients who underwent colorectal surgery and for whom a temporary or permanent stoma had been created were involved in this study. Three-dimensional stoma models and three-dimensional face plates were created. The patients’ ages ranged from 59 to 81 years. Four patients underwent stoma construction because of rectal cancer, and 1 underwent stoma construction because of colon stenosis secondary to recurrent cancer. All patients were educated about their stoma and potential stoma-associated problems using three-dimensional stoma models, and all practiced cutting face plates using three-dimensional face plates. The models were also used during medical staff conferences to discuss current issues. All patients understood their problems and finally became self-reliant. The recent availability of three-dimensional printers has enabled the creation of many organ models, and full-scale stoma and face plate models are now available for patient education on cutting an appropriately individualized face plate. Thus, three-dimensional printers could enable fewer skin problems than are currently associated with daily stomal care. PMID:27403103

11. Higher Dimensional Meta-State Analysis Reveals Reduced Resting fMRI Connectivity Dynamism in Schizophrenia Patients

PubMed Central

Miller, Robyn L.; Yaesoubi, Maziar; Turner, Jessica A.; Mathalon, Daniel; Preda, Adrian; Pearlson, Godfrey; Adali, Tulay; Calhoun, Vince D.

2016-01-01

Resting-state functional brain imaging studies of network connectivity have long assumed that functional connections are stationary on the timescale of a typical scan. Interest in moving beyond this simplifying assumption has emerged only recently. The great hope is that training the right lens on time-varying properties of whole-brain network connectivity will shed additional light on previously concealed brain activation patterns characteristic of serious neurological or psychiatric disorders. We present evidence that multiple explicitly dynamical properties of time-varying whole-brain network connectivity are strongly associated with schizophrenia, a complex mental illness whose symptomatic presentation can vary enormously across subjects. As with so much brain-imaging research, a central challenge for dynamic network connectivity lies in determining transformations of the data that both reduce its dimensionality and expose features that are strongly predictive of important population characteristics. Our paper introduces an elegant, simple method of reducing and organizing data around which a large constellation of mutually informative and intuitive dynamical analyses can be performed. This framework combines a discrete multidimensional data-driven representation of connectivity space with four core dynamism measures computed from large-scale properties of each subject’s trajectory, ie., properties not identifiable with any specific moment in time and therefore reasonable to employ in settings lacking inter-subject time-alignment, such as resting-state functional imaging studies. Our analysis exposes pronounced differences between schizophrenia patients (Nsz = 151) and healthy controls (Nhc = 163). Time-varying whole-brain network connectivity patterns are found to be markedly less dynamically active in schizophrenia patients, an effect that is even more pronounced in patients with high levels of hallucinatory behavior. To the best of our knowledge this is

12. Nonuniform sampling schemes of the Brillouin zone for many-electron perturbation-theory calculations in reduced dimensionality

da Jornada, Felipe H.; Qiu, Diana Y.; Louie, Steven G.

2017-01-01

First-principles calculations based on many-electron perturbation theory methods, such as the ab initio G W and G W plus Bethe-Salpeter equation (G W -BSE) approach, are reliable ways to predict quasiparticle and optical properties of materials, respectively. However, these methods involve more care in treating the electron-electron interaction and are considerably more computationally demanding when applied to systems with reduced dimensionality, since the electronic confinement leads to a slower convergence of sums over the Brillouin zone due to a much more complicated screening environment that manifests in the "head" and "neck" elements of the dielectric matrix. Here we present two schemes to sample the Brillouin zone for G W and G W -BSE calculations: the nonuniform neck subsampling method and the clustered sampling interpolation method, which can respectively be used for a family of single-particle problems, such as G W calculations, and for problems involving the scattering of two-particle states, such as when solving the BSE. We tested these methods on several few-layer semiconductors and graphene and show that they perform a much more efficient sampling of the Brillouin zone and yield two to three orders of magnitude reduction in the computer time. These two methods can be readily incorporated into several ab initio packages that compute electronic and optical properties through the G W and G W -BSE approaches.

13. Reducing slab boundary artifacts in three‐dimensional multislab diffusion MRI using nonlinear inversion for slab profile encoding (NPEN)

PubMed Central

Koopmans, Peter J.; Frost, Robert; Miller, Karla L.

2015-01-01

Purpose To propose a method to reduce the slab boundary artifacts in three‐dimensional multislab diffusion MRI. Methods Bloch simulation is used to investigate the effects of multiple factors on slab boundary artifacts, including characterization of residual errors on diffusion quantification. A nonlinear inversion method is proposed to simultaneously estimate the slab profile and the underlying (corrected) image. Results Correction results of numerical phantom and in vivo data demonstrate that the method can effectively remove slab boundary artifacts for diffusion data. Notably, the nonlinear inversion is also successful at short TR, a regimen where previously proposed methods (slab profile encoding and weighted average) retain residual artifacts in both diffusion‐weighted images and diffusion metrics (mean diffusion coefficient and fractional anisotropy). Conclusion The nonlinear inversion for removing slab boundary artifacts provides improvements over existing methods, particularly at the short TRs required to maximize SNR efficiency. Magn Reson Med 76:1183–1195, 2016. © 2015 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals, Inc. on behalf of International Society for Magnetic Resonance in Medicine. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. PMID:26510172

14. Efficient photoelectrochemical water splitting using three dimensional urchin-like hematite nanostructure modified with reduced graphene oxide

Tamirat, Andebet Gedamu; Su, Wei-Nien; Dubale, Amare Aregahegn; Pan, Chun-Jern; Chen, Hung-Ming; Ayele, Delele Worku; Lee, Jyh-Fu; Hwang, Bing-Joe

2015-08-01

Herein, we present a highly photoactive photoanode for solar water oxidation using three dimensional (3D) urchin-like hematite (α-Fe2O3) nanostructures modified with ultra-thin reduced graphene oxide (rGO). rGO acts as both electron conducting scaffold and surface passivation layer. By virtue of these combined effects, the composite photoanode exhibits 1.47 times higher photocurrent density (1.06 mA cm-2, at 1.23 V vs. reversible hydrogen electrode (RHE)) and two-fold enhancement in the photoconversion efficiency than that of pristine α-Fe2O3. The dual effect of rGO as both electron conducting scaffold and surface passivation layer is further evidenced from the 1.82 and 1.67 fold enhancements in charge separation and charge injection efficiencies at 1.23 and 1 V vs. RHE respectively. To get further evidence about the origin of the improved photoactivity of the rGO modified photoanode, a series of electrochemical, photoelectrochemical and impedance spectroscopy measurements were carried out. Our results demonstrate the benefits of a noble metal free highly promising photoanode for photoelectrochemical water oxidation.

15. Synergetic antibacterial activity of reduced graphene oxide and boron doped diamond anode in three dimensional electrochemical oxidation system

Qi, Xiujuan; Wang, Ting; Long, Yujiao; Ni, Jinren

2015-05-01

A 100% increment of antibacterial ability has been achieved due to significant synergic effects of boron-doped diamond (BDD) anode and reduced graphene oxide (rGO) coupled in a three dimensional electrochemical oxidation system. The rGO, greatly enhanced by BDD driven electric field, demonstrated strong antibacterial ability and even sustained its excellent performance during a reasonable period after complete power cut in the BDD-rGO system. Cell damage experiments and TEM observation confirmed much stronger membrane stress in the BDD-rGO system, due to the faster bacterial migration and charge transfer by the expanded electro field and current-carrying efficiency by quantum tunnel. Reciprocally the hydroxyl-radical production was eminently promoted with expanded area of electrodes and delayed recombination of the electron-hole pairs in presence of the rGO in the system. This implied a huge potential for practical disinfection with integration of the promising rGO and the advanced electrochemical oxidation systems.

16. A multiphase model for three-dimensional tumor growth

PubMed Central

Sciumè, G; Shelton, S; Gray, WG; Miller, CT; Hussain, F; Ferrari, M; Decuzzi, P; Schrefler, BA

2014-01-01

Several mathematical formulations have analyzed the time-dependent behaviour of a tumor mass. However, most of these propose simplifications that compromise the physical soundness of the model. Here, multiphase porous media mechanics is extended to model tumor evolution, using governing equations obtained via the Thermodynamically Constrained Averaging Theory (TCAT). A tumor mass is treated as a multiphase medium composed of an extracellular matrix (ECM); tumor cells (TC), which may become necrotic depending on the nutrient concentration and tumor phase pressure; healthy cells (HC); and an interstitial fluid (IF) for the transport of nutrients. The equations are solved by a Finite Element method to predict the growth rate of the tumor mass as a function of the initial tumor-to-healthy cell density ratio, nutrient concentration, mechanical strain, cell adhesion and geometry. Results are shown for three cases of practical biological interest such as multicellular tumor spheroids (MTS) and tumor cords. First, the model is validated by experimental data for time-dependent growth of an MTS in a culture medium. The tumor growth pattern follows a biphasic behaviour: initially, the rapidly growing tumor cells tend to saturate the volume available without any significant increase in overall tumor size; then, a classical Gompertzian pattern is observed for the MTS radius variation with time. A core with necrotic cells appears for tumor sizes larger than 150 μm, surrounded by a shell of viable tumor cells whose thickness stays almost constant with time. A formula to estimate the size of the necrotic core is proposed. In the second case, the MTS is confined within a healthy tissue. The growth rate is reduced, as compared to the first case – mostly due to the relative adhesion of the tumor and healthy cells to the ECM, and the less favourable transport of nutrients. In particular, for tumor cells adhering less avidly to the ECM, the healthy tissue is progressively displaced

17. Modeling for accurate dimensional scanning electron microscope metrology: then and now.

PubMed

Postek, Michael T; Vladár, András E

2011-01-01

A review of the evolution of modeling for accurate dimensional scanning electron microscopy is presented with an emphasis on developments in the Monte Carlo technique for modeling the generation of the electrons used for imaging and measurement. The progress of modeling for accurate metrology is discussed through a schematic technology timeline. In addition, a discussion of a future vision for accurate SEM dimensional metrology and the requirements to achieve it are presented.

18. Routing strategy on a two-dimensional small-world network model.

PubMed

Li, Ming; Liu, Feng; Ren, Feng-Yuan

2007-06-01

Based on a two-dimensional small-world network model, we propose an efficient routing strategy that enhances the network capacity while keeping the average packet travel time low. We deterministically increase the weight of the links attached to the "congestible nodes" and compute the effective distance of a path by summing up the weight of the links belong to that path. The routing cost of a node is a linear combination of the minimum effective distance from the node to the target and its queue length. The weight assignment reduces the maximum load of the network, while the incorporation of dynamic information further balances the traffic on the network. Simulation results show that the network capacity is much improved compared with the reference strategies, while the average packet travel time is relatively small.

19. Global climate changes as forecast by Goddard Institute for Space Studies three-dimensional model

NASA Technical Reports Server (NTRS)

Hansen, J.; Fung, I.; Lacis, A.; Rind, D.; Lebedeff, S.; Ruedy, R.; Russell, G.

1988-01-01

The global climate effects of time-dependent atmospheric trace gas and aerosol variations are simulated by NASA-Goddard's three-dimensional climate model II, which possesses 8 x 10-deg horizontal resolution, for the cases of a 100-year control run and three different atmospheric composition scenarios in which trace gas growth is respectively a continuation of current exponential trends, a reduced linear growth, and a rapid curtailment of emissions due to which net climate forcing no longer increases after the year 2000. The experiments begin in 1958, run to the present, and encompass measured or estimated changes in CO2, CH4, N2O, chlorofluorocarbons, and stratospheric aerosols. It is shown that the greenhouse warming effect may be clearly identifiable in the 1990s.

20. Philae Cometary Permittivity Probe model and operations with a reduced

Hamelin, M.; Simoes, F.; Schmidt, W.

2009-04-01

The Permittivity Probe (PP) is a subsystem of the SESAME instrument on the Philae lander of the Rosetta mission to comet Churyumov-Gerasimenko. The probe consists of a system of 2 receiving and 3 transmitting electrodes which can be operated in different quadrupolar probe configurations, involving only two receivers and two transmitters at any given time. However, the system of electrodes is strongly influenced by the vicinity of the lander body and other grounded elements that work as additional electrodes. During the operational phases of the mission only one of the transmitter electrodes will always be available, as the two others depend on the deployment status of the host instruments they are attached to. We have built an electrical model of Philae to study non conventional ways for measuring the cometary permittivity with a reduced set of electrodes and the distorting influence of the various lander structure elements.

1. Computational design of patterned interfaces using reduced order models.

PubMed

Vattré, A J; Abdolrahim, N; Kolluri, K; Demkowicz, M J

2014-08-29

Patterning is a familiar approach for imparting novel functionalities to free surfaces. We extend the patterning paradigm to interfaces between crystalline solids. Many interfaces have non-uniform internal structures comprised of misfit dislocations, which in turn govern interface properties. We develop and validate a computational strategy for designing interfaces with controlled misfit dislocation patterns by tailoring interface crystallography and composition. Our approach relies on a novel method for predicting the internal structure of interfaces: rather than obtaining it from resource-intensive atomistic simulations, we compute it using an efficient reduced order model based on anisotropic elasticity theory. Moreover, our strategy incorporates interface synthesis as a constraint on the design process. As an illustration, we apply our approach to the design of interfaces with rapid, 1-D point defect diffusion. Patterned interfaces may be integrated into the microstructure of composite materials, markedly improving performance.

2. Reduced dynamical model of the vibrations of a metal plate

Moreno, D.; Barrientos, Bernardino; Perez-Lopez, Carlos; Mendoza-Santoyo, Fernando; Guerrero, J. A.; Funes, M.

2005-02-01

The Proper Orthogonal Decomposition (POD) method is applied to the vibrations analysis of a metal plate. The data obtained from the metal plate under vibrations were measured with a laser vibrometer. The metal plate was subject to vibrations with an electrodynamical shaker in a range of frequencies from 100 to 5000 Hz. The deformation measurements were taken on a quarter of the plate in a rectangular grid of 7 x 8 points. The plate deformation measurements were used to calculate the eigenfunctions and the eigenvalues. It was found that a large fraction of the total energy of the deformation is contained within the first six POD modes. The essential features of the deformation are thus described by only the six first eigenfunctions. A reduced order model for the dynamical behavior is then constructed using Galerkin projection of the equation of motion for the vertical displacement of a plate.

3. Determinations of from inclusive semileptonic decays with reduced model dependence.

PubMed

2006-06-09

We report two novel determinations of /|Vub/ with reduced model dependence, based on measurements of the mass distribution of the hadronic system in semileptonic B decays. Events are selected by fully reconstructing the decay of one B meson and identifying a charged lepton from the decay of the other B meson from Upsilon(4S)-->BB events. In one approach, we combine the inclusive B-->Xulambdav rate, integrated up to a maximum hadronic mass mX<1.67 GeV/c2, with a measurement of the inclusive B-->Xsgamma photon energy spectrum. We obtain /Vub/=(4.43+/-0.38stat+/-0.25syst+/-0.29theo) x 10-3. In another approach we measure the total B-->Xulambdav rate over the full phase space and find /Vub/=(3.84+/-0.70stat+/-0.30syst+/-0.10theo) x 10-3.

4. Computational design of patterned interfaces using reduced order models

PubMed Central

Vattré, A. J.; Abdolrahim, N.; Kolluri, K.; Demkowicz, M. J.

2014-01-01

Patterning is a familiar approach for imparting novel functionalities to free surfaces. We extend the patterning paradigm to interfaces between crystalline solids. Many interfaces have non-uniform internal structures comprised of misfit dislocations, which in turn govern interface properties. We develop and validate a computational strategy for designing interfaces with controlled misfit dislocation patterns by tailoring interface crystallography and composition. Our approach relies on a novel method for predicting the internal structure of interfaces: rather than obtaining it from resource-intensive atomistic simulations, we compute it using an efficient reduced order model based on anisotropic elasticity theory. Moreover, our strategy incorporates interface synthesis as a constraint on the design process. As an illustration, we apply our approach to the design of interfaces with rapid, 1-D point defect diffusion. Patterned interfaces may be integrated into the microstructure of composite materials, markedly improving performance. PMID:25169868

5. Rotordynamic Analysis of the SSME Turbopumps Using Reduced Models

NASA Technical Reports Server (NTRS)

Noah, S. T.

1984-01-01

Alternative methods for the rotor-dynamic and sensitivity analysis of large rotor systems are examined. The methods are assessed for their ability to utilize accurate models of reduced size along with effective procedures for describing the dynamic behavior of the systems. Frequency response-based techniques are developed for determining the steady state response to imbalance of the space shuttle main engine (SSME) turbopumps and the related eigenvalue problem. The rotor and housing are represented by reduced receptances associated with their coupling points. The housing may be described by all of its normal modes within a frequency range of interest. The effects of truncated higher and lower modes are accounted for in an approximate manner. A procedure is described for determining the sensitivity of the coupling forces to changes in the coupling elements and rotor speed of the turbopump systems. In addition, an eigenvalue sensitivity analysis technique is adopted for application to the systems. Computer programs were developed for the numerical implementation of the impedance and eigenvalue sensitivity formulated in this study.

6. An Overview of Software for Conducting Dimensionality Assessment in Multidimensional Models

ERIC Educational Resources Information Center

Svetina, Dubravka; Levy, Roy

2012-01-01

An overview of popular software packages for conducting dimensionality assessment in multidimensional models is presented. Specifically, five popular software packages are described in terms of their capabilities to conduct dimensionality assessment with respect to the nature of analysis (exploratory or confirmatory), types of data (dichotomous,…

7. Exploring variations in the gauge sector of a six-dimensional flavour model

SciTech Connect

Frère, J.-M.; Libanov, M.; Mollet, S.; Troitsky, S.

2015-03-15

In the context of extra-dimensional models that describe three families of fermions (including their masses and mixing in terms of a single 6-dimensional family), we explore possible variations (including of the extra dimensions) and argue that the apparent plethora of variants does not lead to drastic changes in the expected phenomenology.

8. Identification of Computational and Experimental Reduced-Order Models

NASA Technical Reports Server (NTRS)

Silva, Walter A.; Hong, Moeljo S.; Bartels, Robert E.; Piatak, David J.; Scott, Robert C.

2003-01-01

The identification of computational and experimental reduced-order models (ROMs) for the analysis of unsteady aerodynamic responses and for efficient aeroelastic analyses is presented. For the identification of a computational aeroelastic ROM, the CFL3Dv6.0 computational fluid dynamics (CFD) code is used. Flutter results for the AGARD 445.6 Wing and for a Rigid Semispan Model (RSM) computed using CFL3Dv6.0 are presented, including discussion of associated computational costs. Modal impulse responses of the unsteady aerodynamic system are computed using the CFL3Dv6.0 code and transformed into state-space form. The unsteady aerodynamic state-space ROM is then combined with a state-space model of the structure to create an aeroelastic simulation using the MATLAB/SIMULINK environment. The MATLAB/SIMULINK ROM is then used to rapidly compute aeroelastic transients, including flutter. The ROM shows excellent agreement with the aeroelastic analyses computed using the CFL3Dv6.0 code directly. For the identification of experimental unsteady pressure ROMs, results are presented for two configurations: the RSM and a Benchmark Supercritical Wing (BSCW). Both models were used to acquire unsteady pressure data due to pitching oscillations on the Oscillating Turntable (OTT) system at the Transonic Dynamics Tunnel (TDT). A deconvolution scheme involving a step input in pitch and the resultant step response in pressure, for several pressure transducers, is used to identify the unsteady pressure impulse responses. The identified impulse responses are then used to predict the pressure responses due to pitching oscillations at several frequencies. Comparisons with the experimental data are then presented.

9. Particle orbits in two-dimensional equilibrium models for the magnetotail

NASA Technical Reports Server (NTRS)

Karimabadi, H.; Pritchett, P. L.; Coroniti, F. V.

1990-01-01

Assuming that there exist an equilibrium state for the magnetotail, particle orbits are investigated in two-dimensional kinetic equilibrium models for the magnetotail. Particle orbits in the equilibrium field are compared with those calculated earlier with one-dimensional models, where the main component of the magnetic field (Bx) was approximated as either a hyperbolic tangent or a linear function of z with the normal field (Bz) assumed to be a constant. It was found that the particle orbits calculated with the two types of models are significantly different, mainly due to the neglect of the variation of Bx with x in the one-dimensional fields.

10. The Lagrangian coordinate system and what it means for two-dimensional crowd flow models

van Wageningen-Kessels, Femke; Leclercq, Ludovic; Daamen, Winnie; Hoogendoorn, Serge P.

2016-02-01

A continuum crowd flow model is solved using the Lagrangian coordinate system. The system has proven to give computational advantages over the traditional Eulerian coordinate system for (one-dimensional) road traffic flow. Our extension of the model and simulation method to (two-dimensional) crowd flow paves the way to explore the advantages for crowd flow simulation. Detailed analysis of the advantages is left for future research. However, this paper provides a first exploration and shows that a model and simulation method for two-dimensional crowd flow can be developed using Lagrangian numerical techniques and that it leads to accurate simulation results.

11. Computational Study of Effects of Tension Imbalance on Phonation in a Three Dimensional Tubular Larynx Model

PubMed Central

Xue, Qian; Zheng, Xudong; Mittal, Rajat; Bielamowicz, Steve

2014-01-01

Summary Objective The current study explores the use of a continuum based computational model to investigate the effect of left right tension imbalance on vocal fold vibrations and glottal aerodynamics, as well as its implication on phonation. The study allows us to gain new insights into the underlying physical mechanism of irregularities induced by vocal fold tension imbalance associated with unilateral cricothyroid muscle paralysis. Method A three dimensional simulation of glottal flow and vocal fold dynamics in a tubular laryngeal model with tension imbalance was conducted by using a coupled flow-structure interaction computational model. Tension imbalance was modeled by reducing by 20% the Young’s modulus of one of the vocal folds, while holding vocal fold length constant. Effects of tension imbalance on vibratory characteristic of the vocal folds and on the time-varying properties of glottal airflow as well as the aerodynamic energy transfer are comprehensively analyzed. Results and Conclusions The analysis demonstrates that the continuum based biomechanical model can provide a good description of phonatory dynamics in tension imbalance conditions. It is found that while 20% tension imbalance does not have noticeable effects on the fundamental frequency, it does lead to a larger glottal flow leakage and asymmetric vibrations of the two vocal folds. A detailed analysis of the energy transfer suggests that the majority of the energy is consumed by the lateral motion of the vocal folds and the net energy transferred to the softer fold is less than the one transferred to the normal fold. PMID:24725589

12. Effect of a levee setback on aquatic resources using two-dimensional flow and bioenergetics models

USGS Publications Warehouse

Black, Robert W.; Czuba, Christiana R.; Magirl, Christopher S.; McCarthy, Sarah; Berge, Hans; Comanor, Kyle

2016-04-05

Watershed restoration is the focus of many resource managers and can include a multitude of restoration actions each with specific restoration objectives. For the White River flowing through the cities of Pacific and Sumner, Washington, a levee setback has been proposed to reconnect the river with its historical floodplain to help reduce flood risks, as well as provide increased habitat for federally listed species of salmonids. The study presented here documents the use of a modeling framework that integrates two-dimensional hydraulic modeling with process-based bioenergetics modeling for predicting how changes in flow from reconnecting the river with its floodplain affects invertebrate drift density and the net rate of energy intake of juvenile salmonids. Modeling results were calculated for flows of 25.9 and 49.3 cubic meters per second during the spring, summer, and fall. Predicted hypothetical future mean velocities and depths were significantly lower and more variable when compared to current conditions. The abundance of low energetic cost and positive growth locations for salmonids were predicted to increase significantly in the study reach following floodplain reconnection, particularly during the summer. This modeling framework presents a viable approach for evaluating the potential fisheries benefits of reconnecting a river to its historical floodplain that integrates our understanding of hydraulic, geomorphology, and organismal biology.

13. Use of upscaled elevation and surface roughness data in two-dimensional surface water models

USGS Publications Warehouse

Hughes, J.D.; Decker, J.D.; Langevin, C.D.

2011-01-01

In this paper, we present an approach that uses a combination of cell-block- and cell-face-averaging of high-resolution cell elevation and roughness data to upscale hydraulic parameters and accurately simulate surface water flow in relatively low-resolution numerical models. The method developed allows channelized features that preferentially connect large-scale grid cells at cell interfaces to be represented in models where these features are significantly smaller than the selected grid size. The developed upscaling approach has been implemented in a two-dimensional finite difference model that solves a diffusive wave approximation of the depth-integrated shallow surface water equations using preconditioned Newton–Krylov methods. Computational results are presented to show the effectiveness of the mixed cell-block and cell-face averaging upscaling approach in maintaining model accuracy, reducing model run-times, and how decreased grid resolution affects errors. Application examples demonstrate that sub-grid roughness coefficient variations have a larger effect on simulated error than sub-grid elevation variations.

14. Detection of Subtle Context-Dependent Model Inaccuracies in High-Dimensional Robot Domains.

PubMed

Mendoza, Juan Pablo; Simmons, Reid; Veloso, Manuela

2016-12-01

Autonomous robots often rely on models of their sensing and actions for intelligent decision making. However, when operating in unconstrained environments, the complexity of the world makes it infeasible to create models that are accurate in every situation. This article addresses the problem of using potentially large and high-dimensional sets of robot execution data to detect situations in which a robot model is inaccurate-that is, detecting context-dependent model inaccuracies in a high-dimensional context space. To find inaccuracies tractably, the robot conducts an informed search through low-dimensional projections of execution data to find parametric Regions of Inaccurate Modeling (RIMs). Empirical evidence from two robot domains shows that this approach significantly enhances the detection power of existing RIM-detection algorithms in high-dimensional spaces.

15. Two-dimensional sectioned images and three-dimensional surface models for learning the anatomy of the female pelvis.

PubMed

Shin, Dong Sun; Jang, Hae Gwon; Hwang, Sung Bae; Har, Dong-Hwan; Moon, Young Lae; Chung, Min Suk

2013-01-01

In the Visible Korean project, serially sectioned images of the pelvis were made from a female cadaver. Outlines of significant structures in the sectioned images were drawn and stacked to build surface models. To improve the accessibility and informational content of these data, a five-step process was designed and implemented. First, 154 pelvic structures were outlined with additional surface reconstruction to prepare the image data. Second, the sectioned and outlined images (in a browsing software) as well as the surface models (in a PDF file) were placed on the Visible Korean homepage in a readily-accessible format. Third, all image data were visualized with interactive elements to stimulate creative learning. Fourth, two-dimensional (2D) images and three-dimensional (3D) models were superimposed on one another to provide context and spatial information for students viewing these data. Fifth, images were designed such that structure names would be shown when the mouse pointer hovered over the 2D images or the 3D models. The state-of-the-art sectioned images, outlined images, and surface models, arranged and systematized as described in this study, will aid students in understanding the anatomy of female pelvis. The graphic data accompanied by corresponding magnetic resonance images and computed tomographs are expected to promote th