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Sample records for reduced hot spot

  1. Are 'hot spots' hot spots?

    NASA Astrophysics Data System (ADS)

    Foulger, Gillian R.

    2012-07-01

    The term 'hot spot' emerged in the 1960s from speculations that Hawaii might have its origins in an unusually hot source region in the mantle. It subsequently became widely used to refer to volcanic regions considered to be anomalous in the then-new plate tectonic paradigm. It carried with it the implication that volcanism (a) is emplaced by a single, spatially restricted, mongenetic melt-delivery system, assumed to be a mantle plume, and (b) that the source is unusually hot. This model has tended to be assumed a priori to be correct. Nevertheless, there are many geological ways of testing it, and a great deal of work has recently been done to do so. Two fundamental problems challenge this work. First is the difficulty of deciding a 'normal' mantle temperature against which to compare estimates. This is usually taken to be the source temperature of mid-ocean ridge basalts (MORBs). However, Earth's surface conduction layer is ˜200 km thick, and such a norm is not appropriate if the lavas under investigation formed deeper than the 40-50 km source depth of MORB. Second, methods for estimating temperature suffer from ambiguity of interpretation with composition and partial melt, controversy regarding how they should be applied, lack of repeatability between studies using the same data, and insufficient precision to detect the 200-300 °C temperature variations postulated. Available methods include multiple seismological and petrological approaches, modelling bathymetry and topography, and measuring heat flow. Investigations have been carried out in many areas postulated to represent either (hot) plume heads or (hotter) tails. These include sections of the mid-ocean spreading ridge postulated to include ridge-centred plumes, the North Atlantic Igneous Province, Iceland, Hawaii, oceanic plateaus, and high-standing continental areas such as the Hoggar swell. Most volcanic regions that may reasonably be considered anomalous in the simple plate-tectonic paradigm have been

  2. Configurable hot spot fixing system

    NASA Astrophysics Data System (ADS)

    Kajiwara, Masanari; Kobayashi, Sachiko; Mashita, Hiromitsu; Aburada, Ryota; Furuta, Nozomu; Kotani, Toshiya

    2014-03-01

    Hot spot fixing (HSF) method has been used to fix many hot spots automatically. However, conventional HSF based on a biasing based modification is difficult to fix many hot spots under a low-k1 lithography condition. In this paper we proposed a new HSF, called configurable hotspot fixing system. The HSF has two major concepts. One is a new function to utilize vacant space around a hot spot by adding new patterns or extending line end edges around the hot spot. The other is to evaluate many candidates at a time generated by the new functions. We confirmed the proposed HSF improves 73% on the number of fixing hot spots and reduces total fixing time by 50% on a device layout equivalent to 28nm-node. The result shows the proposed HSF is effective for layouts under the low-k1 lithography condition.

  3. The Earth's Hot Spots.

    ERIC Educational Resources Information Center

    Vink, Gregory E.; And Others

    1985-01-01

    Hot spots are isolated areas of geologic activity where volcanic eruptions, earthquakes, and upwelling currents occur far from plate boundaries. These mantle plumes are relatively stable and crustal plates drift over them. The nature and location of hot spots (with particular attention to the Hawaiian Islands and Iceland) are discussed. (DH)

  4. Solar 'hot spots' are still hot

    NASA Technical Reports Server (NTRS)

    Bai, Taeil

    1990-01-01

    Longitude distributions of solar flares are not random but show evidence for active zones (or hot spots) where flares are concentrated. According to a previous study, two hot spots in the northern hemisphere, which rotate with a synodic period of about 26.72 days, produced the majority of major flares, during solar cycles 20 and 21. The more prominent of these two hot spots is found to be still active during the rising part of cycle 22, producing the majority of northern hemisphere major flares. The synodic rotation period of this hot spot is 26.727 + or - 0.007 days. There is also evidence for hot spots in the southern hemisphere. Two hot spots separated by 180 deg are found to rotate with a period of 29.407 days, with one of them having persisted in the same locations during cycles 19-22 and the other, during cycles 20-22.

  5. Hot Spot Removal System: System description

    SciTech Connect

    1997-09-01

    Hazardous wastes contaminated with radionuclides, chemicals, and explosives exist across the Department of Energy complex and need to be remediated due to environmental concerns. Currently, an opportunity is being developed to dramatically reduce remediation costs and to assist in the acceleration of schedules associated with these wastes by deploying a Hot Spot Removal System. Removing the hot spot from the waste site will remove risk driver(s) and enable another, more cost effective process/option/remedial alternative (i.e., capping) to be applied to the remainder of the site. The Hot Spot Removal System consists of a suite of technologies that will be utilized to locate and remove source terms. Components of the system can also be used in a variety of other cleanup activities. This Hot Spot Removal System Description document presents technologies that were considered for possible inclusion in the Hot Spot Removal System, technologies made available to the Hot Spot Removal System, industrial interest in the Hot Spot Removal System`s subsystems, the schedule required for the Hot Spot Removal System, the evaluation of the relevant technologies, and the recommendations for equipment and technologies as stated in the Plan section.

  6. Hot Spot Cosmic Accelerators

    NASA Astrophysics Data System (ADS)

    2002-11-01

    length of more than 3 million light-years, or no less than one-and-a-half times the distance from the Milky Way to the Andromeda galaxy, this structure is indeed gigantic. The region where the jets collide with the intergalactic medium are known as " hot spots ". Superposing the intensity contours of the radio emission from the southern "hot spot" on a near-infrared J-band (wavelength 1.25 µm) VLT ISAAC image ("b") shows three distinct emitting areas; they are even better visible on the I-band (0.9 µm) FORS1 image ("c"). This emission is obviously associated with the shock front visible on the radio image. This is one of the first times it has been possible to obtain an optical/near-IR image of synchrotron emission from such an intergalactic shock and, thanks to the sensitivity and image sharpness of the VLT, the most detailed view of its kind so far . The central area (with the strongest emission) is where the plasma jet from the galaxy centre hits the intergalactic medium. The light from the two other "knots", some 10 - 15,000 light-years away from the central "hot spot", is also interpreted as synchrotron emission. However, in view of the large distance, the astronomers are convinced that it must be caused by electrons accelerated in secondary processes at those sites . The new images thus confirm that electrons are being continuously accelerated in these "knots" - hence called "cosmic accelerators" - far from the galaxy and the main jets, and in nearly empty space. The exact physical circumstances of this effect are not well known and will be the subject of further investigations. The present VLT-images of the "hot spots" near 3C 445 may not have the same public appeal as some of those beautiful images that have been produced by the same instruments during the past years. But they are not less valuable - their unusual importance is of a different kind, as they now herald the advent of fundamentally new insights into the mysteries of this class of remote and active

  7. Saturn's Hot Spot

    NASA Technical Reports Server (NTRS)

    2005-01-01

    This is the sharpest image of Saturn's temperature emissions taken from the ground; it is a mosaic of 35 individual exposures made at the W.M. Keck I Observatory, Mauna Kea, Hawaii on Feb. 4, 2004.

    The images to create this mosaic were taken with infrared radiation. The mosaic was taken at a wavelength near 17.65 microns and is sensitive to temperatures in Saturn's upper troposphere. The prominent hot spot at the bottom of the image is right at Saturn's south pole. The warming of the southern hemisphere was expected, as Saturn was just past southern summer solstice, but the abrupt changes in temperature with latitude were not expected. The tropospheric temperature increases toward the pole abruptly near 70 degrees latitude from 88 to 89 Kelvin (-301 to -299 degrees Fahrenheit) and then to 91 Kelvin (-296 degrees Fahrenheit) right at the pole.

    Ring particles are not at a uniform temperature everywhere in their orbit around Saturn. The ring particles are orbiting clockwise in this image. Particles are coldest just after having cooled down in Saturn's shadow (lower left). As they orbit Saturn, the particles increase in temperature up to a maximum (lower right) just before passing behind Saturn again in shadow.

    A small section of the ring image is missing because of incomplete mosaic coverage during the observing sequence.

  8. Hot Spot at Yellowstone

    ERIC Educational Resources Information Center

    Dress, Abby

    2005-01-01

    Within this huge national park (over two million acres spread across Wyoming, Montana, and Idaho) are steaming geysers, hot springs, bubbling mudpots, and fumaroles, or steam vents. Drives on the main roads of Yellowstone take tourists through the major hot attractions, which also include Norris Geyser Basin, Upper and Lower Geyser Basin, West…

  9. Development of hot spot fixer (HSF)

    NASA Astrophysics Data System (ADS)

    Kotani, Toshiya; Kyoh, Suigen; Kobayashi, Sachiko; Inazu, Takatoshi; Ikeuchi, Atsuhiko; Urakawa, Yukihiro; Inoue, Soichi; Morita, Etsuya; Klaver, Simon; Horiuchi, Takumi; Peeters, Johan; Kuramoto, Satoshi

    2006-03-01

    A new design for manufacturability (DfM) scheme with a lithography compliance check (LCC) and hot spot fixing (HSF) flow has been developed to guarantee design compliance for OPC and RET by combining lithography simulator, hot spot detector and layout modification tool. Hot spots highlighted by the LCC flow are removed by the HSF flow following modification rule consists of "Line-Sizing" (LS) and "Space-Sizing (SS)" that are resize value of line-width and space-width for the original pattern. In order to meet layout modification requirements at the pre- and post- tape out (T.O.) stages, the priorities individually set for the modification rules and the design rules, which provides flexibly to achieve the modification scheme desirable at each stage. For handling large data at a fast speed, Layout Analyzer (LA) and Layout Optimizer (LO) engines were combined with the HSF flow. LA is used to reconstruct the original hierarchy structure, clips off small parts of the layout that include hot spots from the original layout and sends those to LO in order to reduce the computational time and resource. LO optimizes the clipped off layout following the prioritized modification- and design-rules. The new DfM scheme was found to be quite effective for hot spot cleaning for 65nm node and beyond, since it was demonstrated that the HSF flow improved the lithography margin for the metal layer of 65nm node full-chip data by reducing number of hot spots to below 0.1% of original within about 12 hours, using 1CPU of commercially available workstation.

  10. ESA uncovers Geminga's `hot spot'

    NASA Astrophysics Data System (ADS)

    2004-07-01

    16 July 2004 Astronomers using ESA’s X-ray observatory XMM-Newton have detected a small, bright ‘hot spot’ on the surface of the neutron star called Geminga, 500 light-years away. The hot spot is the size of a football field and is caused by the same mechanism producing Geminga’s X-ray tails. This discovery identifies the missing link between the X-ray and gamma-ray emission from Geminga. hi-res Size hi-res: 1284 kb Credits: ESA, P. Caraveo (IASF, Milan) Geminga's hot spot This figure shows the effects of charged particles accelerated in the magnetosphere of Geminga. Panel (a) shows an image taken with the EPIC instrument on board the XMM-Newton observatory. The bright tails, made of particles kicked out by Geminga’s strong magnetic field, trail the neutron star as it moves about in space. Panel (b) shows how electrically charged particles interact with Geminga’s magnetic field. For example, if electrons (blue) are kicked out by the star, positrons (in red) hit the star’s magnetic poles like in an ‘own goal’. Panel (c) illustrates the size of Geminga’s magnetic field (blue) compared to that of the star itself at the centre (purple). The magnetic field is tilted with respect to Geminga’s rotation axis (red). Panel (d) shows the magnetic poles of Geminga, where charged particles hit the surface of the star, creating a two-million degrees hot spot, a region much hotter than the surroundings. As the star spins on its rotation axis, the hot spot comes into view and then disappears, causing the periodic colour change seen by XMM-Newton. An animated version of the entire sequence can be found at: Click here for animated GIF [low resolution, animated GIF, 5536 KB] Click here for AVI [high resolution, AVI with DIVX compression, 19128 KB] hi-res Size hi-res: 371 kb Credits: ESA, P. Caraveo (IASF, Milan) Geminga's hot spot, panel (a) Panel (a) shows an image taken with the EPIC instrument on board the XMM-Newton observatory. The bright tails, made of

  11. Sustainability of Public Health Interventions to Reduce the Risk of Dioxin Exposure at Severe Dioxin Hot Spots in Vietnam.

    PubMed

    Tuyet-Hanh, Tran Thi; Vu-Anh, Le; Dunne, Michael; Toms, Leisa-Maree; Tenkate, Thomas; Harden, Fiona

    2015-08-01

    Severe dioxin contamination at Bien Hoa and Da Nang airbases, Vietnam is of international concern. Public Health risk reduction programs were implemented in Bien Hoa in 2007-2009 and in Da Nang in 2009-2011. In 2009 and 2011 we reported the encouraging results of these interventions in improving the knowledge, attitude and practices (KAP) of local residents in reducing the dioxin exposure risk through foods. In 2013 we revisited these dioxin hot spots, aimed to evaluate whether the results of the intervention were maintained and to identify factors affecting the sustainability of the programs. To assess this, 16 in-depth interviews, six focus group discussions, and pre and post intervention KAP surveys were undertaken. 800 respondents from six intervention wards and 200 respondents from Buu Long Ward (the control site) were randomly selected to participate in the surveys. The results showed that as of 2013, the programs were rated as "moderately sustained" with a score of 3.3 out of 5.0 (cut off points 2.5 to <3.5) for Bien Hoa, and "well sustained" with a score of 3.8 out of 5.0 (cut off points 3.5 to <4.5) for Da Nang. Most formal intervention program activities had ceased and dioxin risk communication activities were no longer integrated into local routine health education programs. However, the main outcomes were maintained and were better than that in the control ward. Migration, lack of official guidance from City People's Committees and local authorities as well as the politically sensitive nature of dioxin issues were the main challenges for the sustainability of the programs.

  12. Strategy to eliminate catalyst hot-spots in the partial oxidation of methane: enhancing its activity for direct hydrogen production by reducing the reactivity of lattice oxygen.

    PubMed

    Wen, Cun; Liu, Yi; Guo, Yun; Wang, Yanqin; Lu, Guanzhong

    2010-02-14

    Hydrogen can be produced over Er(2)O(3) in methane oxidation (oxygen/methane = 26). The reactivity of lattice oxygen in the catalyst plays a main role in the conversion of surface hydroxyl species to hydrogen or water. Adding a rare earth element into a catalyst can reduce the reactivity of lattice oxygen, resulting in increased hydrogen production, to eliminate catalyst hot-spots.

  13. HotRegion: a database of predicted hot spot clusters

    PubMed Central

    Cukuroglu, Engin; Keskin, Ozlem

    2012-01-01

    Hot spots are energetically important residues at protein interfaces and they are not randomly distributed across the interface but rather clustered. These clustered hot spots form hot regions. Hot regions are important for the stability of protein complexes, as well as providing specificity to binding sites. We propose a database called HotRegion, which provides the hot region information of the interfaces by using predicted hot spot residues, and structural properties of these interface residues such as pair potentials of interface residues, accessible surface area (ASA) and relative ASA values of interface residues of both monomer and complex forms of proteins. Also, the 3D visualization of the interface and interactions among hot spot residues are provided. HotRegion is accessible at http://prism.ccbb.ku.edu.tr/hotregion. PMID:22080558

  14. Not so hot "hot spots" in the oceanic mantle.

    PubMed

    Bonath, E

    1990-10-05

    Excess volcanism and crustal swelling associated with hot spots are generally attributed to thermal plumes upwelling from the mantle. This concept has been tested in the portion of the Mid-Atlantic Ridge between 34 degrees and 45 degrees (Azores hot spot). Peridotite and basalt data indicate that the upper mantle in the hot spot has undergone a high degree of melting relative to the mantle elsewhere in the North Atlantic. However, application of various geothermometers suggests that the temperature of equilibration of peridotites in the mantle was lower, or at least not higher, in the hot spot than elsewhere. The presence of H(2)O-rich metasomatized mantle domains, inferred from peridotite and basalt data, would lower the melting temperature of the hot spot mantle and thereby reconcile its high degree ofmelting with the lack of a mantle temperature anomaly. Thus, some so-called hot spots might be melting anomalies unrelated to abnormally high mantle temperature or thermal plumes.

  15. HotSpot Software Test Plan

    SciTech Connect

    Walker, H; Homann, S G

    2009-03-12

    This Software Test Plan (STP) describes the procedures used to verify and validate that the HotSpot Health Physics Codes meet the requirements of its user base, which includes: (1) Users of the PC version of HotSpot conducting consequence assessment, hazard assessment and safety analysis calculations; and (2) Users of the NARAC Web and iClient software tools, which allow users to run HotSpot for consequence assessment modeling. This plan is intended to meet Critical Recommendation 2 from the Software Evaluation of HotSpot and DOE Safety Software Toolbox Recommendation for inclusion of HotSpot in the Department of Energy (DOE) Safety Software Toolbox. These users and sponsors of the HotSpot software and the organizations they represent constitute the intended audience for this document. HotSpot software is maintained for the Department of Energy Office of Emergency Operations by the National Atmospheric Release Advisory Center (NARAC) at Lawrence Livermore National Laboratory (LLNL). An overview of HotSpot and NARAC are provided.

  16. On-chip Hot Spot Remediation with Miniaturized Thermoelectric Coolers

    NASA Astrophysics Data System (ADS)

    Bar-Cohen, Avram; Wang, Peng

    2009-08-01

    The rapid emergence of nanoelectronics, with the consequent rise in transistor density and switching speed, has led to a steep increase in chip heat flux and growing concern over the emergence of on-chip "hot spots" in microprocessors, along with such high flux regions in power electronic chips and LED's. Miniaturized thermoelectric coolers (μ-TEC's) are a most promising cooling technique for the remediation of such hot spots. This paper presents a comprehensive review of recent advances in novel applications of superlattice, mini-contact, and silicon-based miniaturized thermoelectric coolers in reducing the severity of on-chip hot spots.

  17. HotSpot Health Physics Codes

    SciTech Connect

    Homann, S. G.

    2013-04-18

    The HotSpot Health Physics Codes were created to provide emergency response personnel and emergency planners with a fast, field-portable set of software tools for evaluating insidents involving redioactive material. The software is also used for safety-analysis of facilities handling nuclear material. HotSpot provides a fast and usually conservative means for estimation the radiation effects associated with the short-term (less than 24 hours) atmospheric release of radioactive materials.

  18. Canopy hot-spot as crop identifier

    SciTech Connect

    Gerstl, S.A.W.; Simmer, C.; Powers, B.J.

    1986-05-01

    Illuminating any reflective rough or structured surface by a directional light source results in an angular reflectance distribution that shows a narrow peak in the direction of retro-reflection. This is called the Heiligenschein or hot-spot of vegetation canopies and is caused by mutual shading of leaves. The angular intensity distribution of the hot-spot, its brightness and slope, are therefore indicators of the plant's geometry. We propose the use of hot-spot characteristics as crop identifiers in satellite remote sensing because the canopy hot-spot carries information about plant stand architecture that is more distinctive for different plant species than, for instance, their spectral reflectance characteristics. A simple three-dimensional Monte Carlo/ray tracing model and an analytic two-dimensional model are developed to estimate the angular distribution of the hot-spot as a function of the size of the plant leaves. The results show that the brightness-distribution and slope of the hot-spot change distinctively for different leaf sizes indicating a much more peaked maximum for the smaller leaves.

  19. Modeling deflagration waves out of hot spots

    NASA Astrophysics Data System (ADS)

    Partom, Yehuda

    2017-01-01

    It is widely accepted that shock initiation and detonation of heterogeneous explosives comes about by a two-step process known as ignition and growth. In the first step a shock sweeping through an explosive cell (control volume) creates hot spots that become ignition sites. In the second step, deflagration waves (or burn waves) propagate out of those hot spots and transform the reactant in the cell into reaction products. The macroscopic (or average) reaction rate of the reactant in the cell depends on the speed of those deflagration waves and on the average distance between neighboring hot spots. Here we simulate the propagation of deflagration waves out of hot spots on the mesoscale in axial symmetry using a 2D hydrocode, to which we add heat conduction and bulk reaction. The propagation speed of the deflagration waves may depend on both pressure and temperature. It depends on pressure for quasistatic loading near ambient temperature, and on temperature at high temperatures resulting from shock loading. From the simulation we obtain deflagration fronts emanating out of the hot spots. For 8 to 13 GPa shocks, the emanating fronts propagate as deflagration waves to consume the explosive between hot spots. For higher shock levels deflagration waves may interact with the sweeping shock to become detonation waves on the mesoscale. From the simulation results we extract average deflagration wave speeds.

  20. Hot-spot qualification testing of concentrator modules

    NASA Technical Reports Server (NTRS)

    Gonzalez, C. C.; Sugimura, R. S.; Ross, R. G., Jr.

    1987-01-01

    Results of a study to determine the hot-spot susceptibility of concentrator cells, to provide a hot-spot qualification test for concentrator modules, and to provide guidelines for reducing hot-spot susceptibility are presented. Hot-spot heating occurs in a photovoltaic module when the short-circuit current of a cell is lower than the string operating current, forcing the cell into reverse bias with a concurrent power dissipation. Although the basis for the concentrator-module hot-spot qualification test is the test developed for flat-plate modules, issues such as providing cell illumination introduce additional complexities into the testing procedure. The results indicate that the same general guidelines apply to protecting concentrator modules from hot-spot stressing as apply to flat-plate modules, and recommendations are made on the number of bypass diodes required per given number of series cells per module or source circuit. A method for determining the cell temperature in the laboratory or in the field is discussed.

  1. Statistical Hot Spot Model for Explosive Detonation

    SciTech Connect

    Nichols, III, A L

    2005-07-14

    The Non-local Thermodynamic Equilibrium Statistical Hot Spot Model (NLTE SHS), a new model for explosive detonation, is described. In this model, the formation, ignition, propagation, and extinction of hot spots is explicitly modeled. The equation of state of the explosive mixture is treated with a non-local equilibrium thermodynamic assumption. A methodology for developing the parameters for the model is discussed, and applied to the detonation velocity diameter effect. Examination of these results indicates where future improvements to the model can be made.

  2. Statistical Hot Spot Model for Explosive Detonation

    SciTech Connect

    Nichols III, A L

    2004-05-10

    The Non-local Thermodynamic Equilibrium Statistical Hot Spot Model (NLTE SHS), a new model for explosive detonation, is described. In this model, the formation, ignition, propagation, and extinction of hot spots is explicitly modeled. The equation of state of the explosive mixture is treated with a nonlocal equilibrium thermodynamic assumption. A methodology for developing the parameters for the model is discussed, and applied to the detonation velocity diameter effect. Examination of these results indicates where future improvements to the model can be made.

  3. Process window aware layout optimization using hot spot fixing system

    NASA Astrophysics Data System (ADS)

    Kobayashi, Sachiko; Kyoh, Suigen; Kotani, Toshiya; Inoue, Soichi

    2007-03-01

    The feasibility of Hot Spot Fixing (HSF) system in DfM flow is studied and reported. Hot spot fixing using process simulation is indispensable under low-k1 lithography process for logic devices with advanced design rule (DR). Hot spot such as pinching, bridging, line-end shortening will occur, mainly depending on local pattern context. Proper calibration of DR, mask data preparation (MDP), resolution enhancement technique (RET) and optical proximity effect correction (OPC) will reduce potential hot spots. However, pattern layout variety is so enormous that, even with most careful calibration of every process, unexpected potential hot spots are occasionally left in the design layout 1-2. OPC optimization is useful for maximizing common process margin, but it cannot expand individual pattern's process margin without modification of design layout. So, at an early design stage, hot spot extraction using lithography compliance check (LCC) and manual modification of design at hot spots will be a simple and useful method. The problem is that, it is difficult to determine how to modify layout in order to be consistent with DR, MDP/OPC rule. For proper layout modification, intimate knowledge of the entire process would be necessary, and moreover, the modification work often tends to be iterative, and thus time-consuming. Therefore, using our automated HSF system in the cell design stage and also the chip design stage is helpful for fixing design layout while avoiding fatal hot spot occurrence, with enough process margin and also with short turnaround time (TAT) 3-4. The basic system flow in the developed system is as follows; LCC extracts potential hot spots, and the hot spots are categorized by lithography error mode, grade, and surrounding context. And then, hot spot modification instructor, taking the surrounding situation into consideration, generates modification guide for every hot spot. Design data is automatically modified according to the instruction at every hot

  4. Hot-spot tectonics on Io

    NASA Technical Reports Server (NTRS)

    Mcewen, A. S.

    1985-01-01

    The thesis is that extensional tectonics and low-angle detachment faults probably occur on Io in association with the hot spots. These processes may occur on a much shorter timescale on Ion than on Earth, so that Io could be a natural laboratory for the study of thermotectonics. Furthermore, studies of heat and detachment in crustal extension on Earth and the other terresrial planets (especially Venus and Mars) may provide analogs to processes on Io. The geology of Io is dominated by volcanism and hot spots, most likely the result of tidal heating. Hot spots cover 1 to 2% of Io's surface, radiating at temperatures typically from 200 to 400 K, and occasionally up to 700K. Heat loss from the largest hot spots on Io, such as Loki Patera, is about 300 times the heat loss from Yellowstone, so a tremendous quantity of energy is available for volcanic and tectonic work. Active volcanism on Io results in a resurfacing rate as high as 10 cm per year, yet many structural features are apparent on the surface. Therefore, the tectonics must be highly active.

  5. The Power Company Hot-Spot

    NASA Astrophysics Data System (ADS)

    Barresi, Joseph F.

    1984-03-01

    Just as your companies screen and monitor the market place to determine demand and the public's perception of product need, the power company is constantly faced with studying and forecasting the potential for load growth within it's franchised areas. This study and it's resultant forecast for growth has placed the power industry in a hot spot.

  6. Two New Hot Spots on Io

    NASA Technical Reports Server (NTRS)

    1997-01-01

    The Near-Infrared Mapping Spectrometer (NIMS) on Galileo obtained this image of half of Io's disk in darkness on September 19, 1997. This image, at 5 microns, shows several hot spots on Io, which are volcanic regions of enhanced thermal emission. The area shown is part of the leading hemisphere of Io.

    Two new hot spots are shown and indicated in the image (New, and Shamshu). Neither of these hot spots were seen by NIMS or the Solid State Imaging Experiment, (SSI) prior to this observation, becoming only recently active. Several other previously known hot spots are labelled in the image. Galileo was at a distance of 342,000 km from Io when this observation was made.

    The Jet Propulsion Laboratory, Pasadena, CA manages the mission for NASA's Office of Space Science, Washington, DC.

    The Jet Propulsion Laboratory, Pasadena, CA manages the mission for NASA's Office of Space Science, Washington, DC.

    This image and other images and data received from Galileo are posted on the World Wide Web, on the Galileo mission home page at URL http://galileo.jpl.nasa.gov.

  7. Mutation hot spots in mammalian mitochondrial DNA.

    PubMed

    Galtier, Nicolas; Enard, David; Radondy, Yoan; Bazin, Eric; Belkhir, Khalid

    2006-02-01

    Animal mitochondrial DNA is characterized by a remarkably high level of within-species homoplasy, that is, phylogenetic incongruence between sites of the molecule. Several investigators have invoked recombination to explain it, challenging the dogma of maternal, clonal mitochondrial inheritance in animals. Alternatively, a high level of homoplasy could be explained by the existence of mutation hot spots. By using an exhaustive mammalian data set, we test the hot spot hypothesis by comparing patterns of site-specific polymorphism and divergence in several groups of closely related species, including hominids. We detect significant co-occurrence of synonymous polymorphisms among closely related species in various mammalian groups, and a correlation between the site-specific levels of variability within humans (on one hand) and between Hominoidea species (on the other hand), indicating that mutation hot spots actually exist in mammalian mitochondrial coding regions. The whole data, however, cannot be explained by a simple mutation hot spots model. Rather, we show that the site-specific mutation rate quickly varies in time, so that the same sites are not hypermutable in distinct lineages. This study provides a plausible mutation model that potentially accounts for the peculiar distribution of mitochondrial sequence variation in mammals without the need for invoking recombination. It also gives hints about the proximal causes of mitochondrial site-specific hypermutability in humans.

  8. Hot spot conditions during cavitation in water

    SciTech Connect

    Didenko, Y.T.; McNamara, W.B. III; Suslick, K.S.

    1999-06-23

    Liquids irradiated with high-intensity ultrasound undergo acoustic cavitation--the formation, growth, and implosive collapse of bubbles. The energy stored during the growth of the bubble in the rarefaction phase of the acoustic field is released when the bubble violently collapses in the compression phase of the acoustic field, as acoustic noise, shock waves, chemical reactions, and the emission of light (sonoluminescence, SL). This violent collapse is predicted to generate a hot spot of thousands of Kelvin within the bubble, but, to date, there have been only a limited number of experimental measurements of the temperature of this hot spot. Although the SL of water has been studied for more than 50 years, the effective hot spot temperature during aqueous cavitation remains unresolved. Given the importance of aqueous cavitation (sonography and bioeffects of ultrasound, sonochemical remediation of aqueous pollutants, synthetic applications of sonochemistry, etc.), the authors decided to apply previous spectroscopic analysis of SL of nonaqueous liquids to aqueous solutions doped with small amounts of hydrocarbons. The authors have collected and analyzed excited-state C{sub 2} NBSL (multi-bubble sonoluminescence, light emission from the clouds of cavitating bubbles) spectra from mixtures of organic liquids in water at 20 kHz and find an effective emission temperature of 4,300 {+-} 200 K.

  9. Automated hot-spot fixing system applied for metal layers of 65 nm logic devices

    NASA Astrophysics Data System (ADS)

    Kobayashi, Sachiko; Kyoh, Suigen; Kotani, Toshiya; Tanaka, Satoshi; Inoue, Soichi

    2006-05-01

    Hot spot clearance using process simulation is indispensable under low-k1 lithography process for logic devices of 65 nm and below. Hot spots such as pinching, bridging, line-end shortening will occur, mainly depending on local pattern context. Appropriate calibration of design rule (DR), mask data preparation (MDP), resolution enhancement technique (RET) and optical proximity effect correction (OPC) will reduce potential hot spots. However, pattern layout variety is so enormous that, even with the most careful calibration of every process, an unexpected potential hot spot is occasionally left in the design layout. Manual modification of design at hot spot will be effective, but it takes too much time to determine how to modify layout to be consistent with DR, MDP/OPC rule, and the process often needs to be iterative. Therefore, there is a need for an automated hot spot fixing system is capable of fixing design layout so as to avoid fatal hot spot occurrence, with sufficient process margin and short turn around time (TAT). We developed an automated hot-spot fixing system, Hot Spot Fixer (HSF). The basic system flow in the developed system is as follows; Design data is processed with the conventional mask data preparation process. Then, process simulation is performed to extract hot spots. The hot spots are categorized by lithography error mode, critical level, and surrounding context. An intelligent hot-spot modification instructor, taking the surrounding situation into consideration, generates modification guide for the every hot spot. Design data is automatically modified according to the instruction at every hot spot, complying with the design rule. If necessary, several modification candidates are indicated and the user can choose the most adequate one from them. The design modification process is verified from every aspect, using Design Rule Checker (DRC) and process simulation. The modified design data, with reduced potential hot spot compared with pre

  10. Characterizing hot spots throughout the catchment

    NASA Astrophysics Data System (ADS)

    Welti, N.; Lockington, D.; Jakeman, T.; Hunt, R.

    2012-04-01

    Few catchments in the world are left truly undisturbed. Rather, they are under anthropogenic stress for a variety of reasons ranging from climate forcing to meeting the basic water allocation needs of the population. Reduction in the number of inundation areas has significantly decreased the nutrient and organic matter retention capacity along the river corridor, with major consequences for the both the riverine and coastal ecosystems. Cumulative stress may build up to a "tipping point" which can cause a change or set of changes which could occur non-linearly. In order to mitigate the environmental stress on these ecosystems, management plans are created to balance the needs of the dependent populations and those of ecology. While these catchment-wide plans aim to improve the ecological function of aquatic areas over the large scale, this sledge-hammer approach ignores the inherent heterogeneity in the catchment. Societal (and policy) decisions involve more than abiotic quantification of water storage and flow. A more encompassing ecohydrological view facilitates a more rounded policy framework that has flexibility to accommodate multiple social drivers, and one that can accommodate an "ecosystem improvement" rather than single species improvement. Not every spot in the landscape is equally valuable for specific societal values. Areas of high activity may provide the resilience capacity necessary to prevent catastrophic changes. In times of ecological instability, ecosystem resilience is of paramount importance in maintaining essential ecosystem services. Hot spots of biogeochemical cycling will occur where unique situations arise, such as areas of surface and groundwater interaction, creating spots of localized, high activity. In order to understand the systems' potential to support various habitat niches in the large scale, the identification of specific hot spots or hot moments is necessary. A basal understanding of the concurrent biogeochemical cycles enables

  11. Structural hot spots for the solubility of globular proteins.

    PubMed

    Ganesan, Ashok; Siekierska, Aleksandra; Beerten, Jacinte; Brams, Marijke; Van Durme, Joost; De Baets, Greet; Van der Kant, Rob; Gallardo, Rodrigo; Ramakers, Meine; Langenberg, Tobias; Wilkinson, Hannah; De Smet, Frederik; Ulens, Chris; Rousseau, Frederic; Schymkowitz, Joost

    2016-02-24

    Natural selection shapes protein solubility to physiological requirements and recombinant applications that require higher protein concentrations are often problematic. This raises the question whether the solubility of natural protein sequences can be improved. We here show an anti-correlation between the number of aggregation prone regions (APRs) in a protein sequence and its solubility, suggesting that mutational suppression of APRs provides a simple strategy to increase protein solubility. We show that mutations at specific positions within a protein structure can act as APR suppressors without affecting protein stability. These hot spots for protein solubility are both structure and sequence dependent but can be computationally predicted. We demonstrate this by reducing the aggregation of human α-galactosidase and protective antigen of Bacillus anthracis through mutation. Our results indicate that many proteins possess hot spots allowing to adapt protein solubility independently of structure and function.

  12. Structural hot spots for the solubility of globular proteins

    PubMed Central

    Ganesan, Ashok; Siekierska, Aleksandra; Beerten, Jacinte; Brams, Marijke; Van Durme, Joost; De Baets, Greet; Van der Kant, Rob; Gallardo, Rodrigo; Ramakers, Meine; Langenberg, Tobias; Wilkinson, Hannah; De Smet, Frederik; Ulens, Chris; Rousseau, Frederic; Schymkowitz, Joost

    2016-01-01

    Natural selection shapes protein solubility to physiological requirements and recombinant applications that require higher protein concentrations are often problematic. This raises the question whether the solubility of natural protein sequences can be improved. We here show an anti-correlation between the number of aggregation prone regions (APRs) in a protein sequence and its solubility, suggesting that mutational suppression of APRs provides a simple strategy to increase protein solubility. We show that mutations at specific positions within a protein structure can act as APR suppressors without affecting protein stability. These hot spots for protein solubility are both structure and sequence dependent but can be computationally predicted. We demonstrate this by reducing the aggregation of human α-galactosidase and protective antigen of Bacillus anthracis through mutation. Our results indicate that many proteins possess hot spots allowing to adapt protein solubility independently of structure and function. PMID:26905391

  13. Multiscale Simulation of Hot Spot Ignition

    NASA Astrophysics Data System (ADS)

    Fried, Laurence; Najjar, Fady; Howard, W. Michael; Manaa, M. Riad; Bastea, Sorin

    2011-06-01

    High explosive shock sensitivity is controlled by a combination of mechanical response, thermal properties, and chemical properties. How these properties interplay in realistic condensed energetic materials is not well understood. In this paper, we use a multiscale approach to achieve a realistic simulation of hot spot (void) ignition in a single crystal of the explosive 1,3,5-triamino-2,4,6-trinitrobenzene (TATB). The smallest length scale (<10 nm) of the multiscale model was treated quantum mechanically. We have conducted multiple simulations of the decomposition of the explosive TATB using density functional tight binding molecular dynamics (DFTB-MD). Nanoscale continuum simulations were performed of void ignition using the ALE3D hydrodynamic/thermal/chemical code. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.

  14. Chromosomal context dependence of a eukaryotic recombinational hot spot.

    PubMed Central

    Ponticelli, A S; Smith, G R

    1992-01-01

    The single base-pair mutation M26 in the ade6 gene of the fission yeast Schizosaccharomyces pombe creates a hot spot for meiotic homologous recombination. When DNA fragments containing M26 and up to 3.0 kilobases of surrounding DNA were moved to the ura4 gene or to a multicopy plasmid, M26 had no detectable hot spot activity. Our results indicate that nucleotide sequences at least 1 kilobase away from M26 are required for M26 hot spot activity and suggest that, as for transcriptional promoters, a second site or proper chromatin structure is required for activation of this eukaryotic recombinational hot spot. We discuss the implications of these results for studies of other meiotic recombinational hot spots and for gene targeting. PMID:1729693

  15. Meteorology of Jupiter's Equatorial Hot Spots and Plumes from Cassini

    NASA Technical Reports Server (NTRS)

    Choi, David Sanghun; Showman, Adam P.; Vasavada, Ashwin R.; Simon-Miller, Amy A.

    2013-01-01

    We present an updated analysis of Jupiter's equatorial meteorology from Cassini observations. For two months preceding the spacecraft's closest approach, the Imaging Science Subsystem (ISS) onboard regularly imaged the atmosphere. We created time-lapse movies from this period in order to analyze the dynamics of equatorial hot spots and their interactions with adjacent latitudes. Hot spots are relatively cloud-free regions that emit strongly at 5 lm; improved knowledge of these features is crucial for fully understanding Galileo probe measurements taken during its descent through one. Hot spots are quasistable, rectangular dark areas on visible-wavelength images, with defined eastern edges that sharply contrast with surrounding clouds, but diffuse western edges serving as nebulous boundaries with adjacent equatorial plumes. Hot spots exhibit significant variations in size and shape over timescales of days and weeks. Some of these changes correspond with passing vortex systems from adjacent latitudes interacting with hot spots. Strong anticyclonic gyres present to the south and southeast of the dark areas appear to circulate into hot spots. Impressive, bright white plumes occupy spaces in between hot spots. Compact cirrus-like 'scooter' clouds flow rapidly through the plumes before disappearing within the dark areas. These clouds travel at 150-200 m/s, much faster than the 100 m/s hot spot and plume drift speed. This raises the possibility that the scooter clouds may be more illustrative of the actual jet stream speed at these latitudes. Most previously published zonal wind profiles represent the drift speed of the hot spots at their latitude from pattern matching of the entire longitudinal image strip. If a downward branch of an equatorially-trapped Rossby wave controls the overall appearance of hot spots, however, the westward phase velocity of the wave leads to underestimates of the true jet stream speed.

  16. Hot-spot heating in central-station arrays

    NASA Technical Reports Server (NTRS)

    Gonzalez, C. C.

    1983-01-01

    Hot spot tests performed on the Sacramento Municipal Utility District (SMUD) verificaton array show that current imbalance occurs, resulting in significant hot spot heating. One cause of current imbalance is differences in the average shunt resistances of parallel cell strings due to cell shunt resistance variations. In depth hot spot tests are performed on the verification array with bypass diodes. The tests had several objectives: (1) a comparison of hot spot temperatures achieved under field conditions with those obtained with the present laboratory hot spot test using similar modules; (2) an assessment of current imbalance versus cross tie frequency; and (3) an assessment of different shadow patterns and shadow densities. Instrumented modules are used to vary the number of cross ties and to measure the test-cell current and back-bias voltage. The widths, lengths, and densities of the shadows are varied to maximize the back bias voltage at maximum power current. An infrared camera is used to indicate the existence of hot spots and estimate temperature increases in conjunction with thermocouples. The results of these hot spot tests indicate a sensitivity of back bias heating to the shadow size (amount of cell coverage) and density.

  17. Broadening of hot-spot response spectrum of superconducting NbN nanowire single-photon detector with reduced nitrogen content

    NASA Astrophysics Data System (ADS)

    Henrich, D.; Dörner, S.; Hofherr, M.; Il'in, K.; Semenov, A.; Heintze, E.; Scheffler, M.; Dressel, M.; Siegel, M.

    2012-10-01

    The spectral detection efficiency and the dark count rate of superconducting nanowire single-photon detectors (SNSPD) have been studied systematically on detectors made from thin NbN films with different chemical compositions. Reduction of the nitrogen content in the 4 nm thick NbN films results in a decrease of the dark count rates more than two orders of magnitude and in a red shift of the cut-off wavelength of the hot-spot SNSPD response. The observed phenomena are explained by an improvement of uniformity of NbN films that has been confirmed by a decrease of resistivity and an increase of the ratio of the measured critical current to the depairing current. The latter factor is considered as the most crucial for both the cut-off wavelength and the dark count rates of SNSPD. Based on our results we propose a set of criteria for material properties to optimize SNSPD in the infrared spectral region.

  18. Hot spot-ridge crest convergence in the northeast Pacific

    SciTech Connect

    Karsten, J.L.; Delaney, J.R. )

    1989-01-10

    Evolution of the Juan de Fuca Ridge during the past 7 m.y. has been reconstructed taking into account both the propagating rift history and migration of the spreading center in the 'absolute' (fixed hot spot) reference frame. Northwestward migration of the spreading center (at a rate of 30 km/m.y.) has resulted in progressive encroachment of the ridge axis on the Cobb Hot Spot and westward jumping of the central third of the ridge axis more recently than 0.5 Ma. Seamounts in the Cobb-Eickelberg chain are predicted to display systematic variations in morphology and petrology, and a reduction in the age contrast between the edifice and underlying crust, as a result of the ridge axis approach. Relative seamount volumes also indicate that magmatic output of the hot spot varied during this interval, with a reduction in activity between 2.5 and 4.5 Ma, compared with relatively more robust activity before and after this period. Spatial relationships determined in this reconstruction allow hypotheses relating hot spot activity and rift propagation to be evaluated. In most cases, rift propagation has been directed away from the hot spot during the time period considered. Individual propagators show some reduction in propagation rate as separation between the propagating rift tip and hot spot increases, but cross comparison of multiple propagators does not uniformly display the same relationship. No obvious correlation exists between propagation rate and increasing proximity of the hot spot to the ridge axis or increasing hot spot output. Taken together, these observations do not offer compelling support for the concept of hot spot driven rift propagation. However, short-term reversals in propagation direction at the Cobb Offset coincide with activity of the Heckle melting anomaly, suggesting that local propagation effects may be related to excess magma supply at the ridge axis.

  19. Identification of and Remedial Approaches to Hot Spots

    DTIC Science & Technology

    2004-03-01

    New York – Coney Island , NY – Sea Bright, NJ (3 hot spots) • U.S. Army Engineer District, Philadelphia – Ocean City, NJ • U.S. Army Engineer... Island , NY. Coney Island , the westernmost barrier island on Long Island had its first beach nourishment in 1922-23. The latest U.S. Army Corps of...Figure 1. Location of beach-fill project hot spots discussed in paper Figure 2. Coney Island , NY hot spot location 5 ERDC/CHL CHETN-II-47 March

  20. The evolutionary turnover of recombination hot spots contributes to speciation in mice

    PubMed Central

    Smagulova, Fatima; Brick, Kevin; Pu, Yongmei; Camerini-Otero, R. Daniel; Petukhova, Galina V.

    2016-01-01

    Meiotic recombination is required for the segregation of homologous chromosomes and is essential for fertility. In most mammals, the DNA double-strand breaks (DSBs) that initiate meiotic recombination are directed to a subset of genomic loci (hot spots) by sequence-specific binding of the PRDM9 protein. Rapid evolution of the DNA-binding specificity of PRDM9 and gradual erosion of PRDM9-binding sites by gene conversion will alter the recombination landscape over time. To better understand the evolutionary turnover of recombination hot spots and its consequences, we mapped DSB hot spots in four major subspecies of Mus musculus with different Prdm9 alleles and in their F1 hybrids. We found that hot spot erosion governs the preferential usage of some Prdm9 alleles over others in hybrid mice and increases sequence diversity specifically at hot spots that become active in the hybrids. As crossovers are disfavored at such hot spots, we propose that sequence divergence generated by hot spot turnover may create an impediment for recombination in hybrids, potentially leading to reduced fertility and, eventually, speciation. PMID:26833728

  1. The evolutionary turnover of recombination hot spots contributes to speciation in mice.

    PubMed

    Smagulova, Fatima; Brick, Kevin; Pu, Yongmei; Camerini-Otero, R Daniel; Petukhova, Galina V

    2016-02-01

    Meiotic recombination is required for the segregation of homologous chromosomes and is essential for fertility. In most mammals, the DNA double-strand breaks (DSBs) that initiate meiotic recombination are directed to a subset of genomic loci (hot spots) by sequence-specific binding of the PRDM9 protein. Rapid evolution of the DNA-binding specificity of PRDM9 and gradual erosion of PRDM9-binding sites by gene conversion will alter the recombination landscape over time. To better understand the evolutionary turnover of recombination hot spots and its consequences, we mapped DSB hot spots in four major subspecies of Mus musculus with different Prdm9 alleles and in their F1 hybrids. We found that hot spot erosion governs the preferential usage of some Prdm9 alleles over others in hybrid mice and increases sequence diversity specifically at hot spots that become active in the hybrids. As crossovers are disfavored at such hot spots, we propose that sequence divergence generated by hot spot turnover may create an impediment for recombination in hybrids, potentially leading to reduced fertility and, eventually, speciation.

  2. Hot spots of soil respiration in an Asian tropical rainforest

    NASA Astrophysics Data System (ADS)

    Ohashi, Mizue; Kume, Tomonori; Yamane, Seiki; Suzuki, Masakazu

    2007-04-01

    Little is known about the variability in carbon dioxide (CO2) emissions from soil (soil respiration) in tropical rainforests. We studied temporal and spatial fluctuations of soil respiration in an intact Asian tropical rainforest. The values of soil respiration were distributed lognormally with mean and median values of 5.32 and 4.65 μmol m-2 s-1, respectively. Soil respiration varied little over time though highly in space. CO2 hot spots (>10 μmol m-2 s-1) were found with extremely high values (15-25 μmol m-2 s-1). Each CO2 hot spot occurred sporadically at different times and locations. It is hypothesized that animal activities are responsible for the hot spots. The impact of CO2 hot spots on total soil respiration was 10%, which is comparable to the estimation of net C balance in tropical rainforests.

  3. On the burn topology of hot-spot-initiated reactions

    SciTech Connect

    Hill, Larry G; Zimmermann, Bjorn; Nichols, Albert L

    2009-01-01

    We determine the reaction progress function for an ideal hot spot model problem. The considered problem has an exact analytic solution that can derived from a reduction of Nichols statistical hot spot model. We perform numerical calculations to verify the analytic solution and to illustrate the error realized in real, finite systems. We show how the baseline problem, which does not distinguish between the reactant and product densities, can be scaled to handle general cases for which the two densities differ.

  4. Modelling propagation of deflagration waves out of hot spots

    NASA Astrophysics Data System (ADS)

    Partom, Yehuda

    2015-06-01

    It is widely accepted that shock initiation and detonation of heterogeneous explosives come about by a two-step process known as ignition and growth. In the first step a shock sweeping an explosive cell (control volume) creates hot spots that become ignition sites. In the second step deflagration waves (or burn waves) propagate out of those hot spots and transform the reactant in the cell into reaction products. The macroscopic (or average) reaction rate of the reactant in a cell depends on the speed of those deflagration waves and on the average distance between neighbouring hot spots. Here we simulate the propagation of deflagration waves out of hot spots on the mesoscale in axial symmetry using a 2D hydrocode, to which we add heat conduction and bulk reaction. The propagation speed of the deflagration wave depends on both pressure and temperature, where pressure dependence is dominant at low shock level, and temperature dependence is dominant at a higher shock level. From the simulation we obtain deflagration (or burn) fronts emanating out of the hot spots. For intermediate shock levels the deflagration waves consume the explosive between hot spots. For higher shock levels the deflagration waves strengthen to become detonation waves on the mesoscale. From the simulation results we extract average deflagration wave speeds and show how they depend on reaction rate and on other material parameters.

  5. A measurement concept for hot-spot BRDFs from space

    NASA Technical Reports Server (NTRS)

    Gerstl, S.A.W.

    1996-01-01

    Several concepts for canopy hot-spot measurements from space have been investigated. The most promising involves active illumination and bistatic detection that would allow hot-spot angular distribution (BRDF) measurements from space in a search-light mode. The concept includes a pointable illumination source, such as a laser operating at an atmospheric window wavelength, coupled with a number of high spatial-resolution detectors that are clustered around the illumination source in space, receiving photons nearly coaxial with the reto-reflection direction. Microwave control and command among the satellite cluster would allow orienting the direction of the laser beam as well as the focusing detectors simultaneously so that the coupled system can function like a search light with almost unlimited pointing capabilities. The concept is called the Hot-Spot Search-Light (HSSL) satellite. A nominal satellite altitude of 600 km will allow hot-spot BRDF measurements out to about 18 degrees phase angle. The distributed are taking radiometric measurements of the intensity wings of the hot-spot angular distribution without the need for complex imaging detectors. The system can be operated at night for increased signal-to-noise ratio. This way the hot-spot angular signatures can be quantified and parameterized in sufficient detail to extract the biophysical information content of plant architectures.

  6. A measurement concept for hot-spot BRDFs from space

    SciTech Connect

    Gerstl, S.A.W.

    1996-09-01

    Several concepts for canopy hot-spot measurements from space have been investigated. The most promising involves active illumination and bistatic detection that would allow hot-spot angular distribution (BRDF) measurements from space in a search-light mode. The concept includes a pointable illumination source, such as a laser operating at an atmospheric window wavelength, coupled with a number of high spatial-resolution detectors that are clustered around the illumination source in space, receiving photons nearly coaxial with the reto-reflection direction. Microwave control and command among the satellite cluster would allow orienting the direction of the laser beam as well as the focusing detectors simultaneously so that the coupled system can function like a search light with almost unlimited pointing capabilities. The concept is called the Hot-Spot Search-Light (HSSL) satellite. A nominal satellite altitude of 600 km will allow hot-spot BRDF measurements out to about 18 degrees phase angle. The distributed are taking radiometric measurements of the intensity wings of the hot-spot angular distribution without the need for complex imaging detectors. The system can be operated at night for increased signal-to-noise ratio. This way the hot-spot angular signatures can be quantified and parameterized in sufficient detail to extract the biophysical information content of plant architectures.

  7. Process window limiting hot spot monitoring for high-volume manufacturing

    NASA Astrophysics Data System (ADS)

    Jochemsen, Marinus; Anunciado, Roy; Timoshkov, Vadim; Hunsche, Stefan; Zhou, Xinjian; Jones, Chris; Callan, Neal

    2016-03-01

    As process window margins for cutting edge DUV lithography continue to shrink, the impact of systematic patterning defects on final yield increases. Finding process window limiting hot spot patterns and monitoring them in high volume manufacturing (HVM) is increasingly challenging with conventional methods, as the size of critical defects can be below the resolution of traditional HVM inspection tools. We utilize a previously presented computational method of finding hot spot patterns by full chip simulation and use this to guide high resolution review tools by predicting the state of the hot spots on all fields of production wafers. In experiments with a 10nm node Metal LELELE vehicle we show a 60% capture rate of after-etch defects down to 3nm in size, at specific hot spot locations. By using the lithographic focus and dose correction knobs we can reduce the number of patterning defects for this test case by ~60%.

  8. Determination of hot-spot susceptibility of multistring photovoltaic modules in a central-station application

    NASA Technical Reports Server (NTRS)

    Gonzalez, C. C.; Weaver, R. W.; Ross, R. G., Jr.; Spencer, R.; Arnett, J. C.

    1984-01-01

    Part of the effort of the Jet Propulsion Laboratory (JPL) Flat-Plate Solar Array Project (FSA) includes a program to improve module and array reliability. A collaborative activity with industry dealing with the problem of hot-spot heating due to the shadowing of photovoltaic cells in modules and arrays containing several paralleled cell strings is described. The use of multiparallel strings in large central-station arrays introduces the likelihood of unequal current sharing and increased heating levels. Test results that relate power dissipated, current imbalance, cross-strapping frequency, and shadow configuration to hot-spot heating levels are presented. Recommendations for circuit design configurations appropriate to central-station applications that reduce the risk of hot-spot problems are offered. Guidelines are provided for developing hot-spot tests for arrays when current imbalance is a threat.

  9. Identifying Recombination Hot Spots in the HIV-1 Genome

    PubMed Central

    Smyth, Redmond P.; Schlub, Timothy E.; Grimm, Andrew J.; Waugh, Caryll; Ellenberg, Paula; Chopra, Abha; Mallal, Simon; Cromer, Deborah

    2014-01-01

    ABSTRACT HIV-1 infection is characterized by the rapid generation of genetic diversity that facilitates viral escape from immune selection and antiretroviral therapy. Despite recombination's crucial role in viral diversity and evolution, little is known about the genomic factors that influence recombination between highly similar genomes. In this study, we use a minimally modified full-length HIV-1 genome and high-throughput sequence analysis to study recombination in gag and pol in T cells. We find that recombination is favored at a number of recombination hot spots, where recombination occurs six times more frequently than at corresponding cold spots. Interestingly, these hot spots occur near important features of the HIV-1 genome but do not occur at sites immediately around protease inhibitor or reverse transcriptase inhibitor drug resistance mutations. We show that the recombination hot and cold spots are consistent across five blood donors and are independent of coreceptor-mediated entry. Finally, we check common experimental confounders and find that these are not driving the location of recombination hot spots. This is the first study to identify the location of recombination hot spots between two similar viral genomes with great statistical power and under conditions that closely reflect natural recombination events among HIV-1 quasispecies. IMPORTANCE The ability of HIV-1 to evade the immune system and antiretroviral therapy depends on genetic diversity within the viral quasispecies. Retroviral recombination is an important mechanism that helps to generate and maintain this genetic diversity, but little is known about how recombination rates vary within the HIV-1 genome. We measured recombination rates in gag and pol and identified recombination hot and cold spots, demonstrating that recombination is not random but depends on the underlying gene sequence. The strength and location of these recombination hot and cold spots can be used to improve models of

  10. ``Hot spots'' growth on single nanowire controlled by electric charge

    NASA Astrophysics Data System (ADS)

    Xi, Shaobo; Liu, Xuehua; He, Ting; Tian, Lei; Wang, Wenhui; Sun, Rui; He, Weina; Zhang, Xuetong; Zhang, Jinping; Ni, Weihai; Zhou, Xiaochun

    2016-06-01

    ``Hot spots'' - a kind of highly active site, which are usually composed of some unique units, such as defects, interfaces, catalyst particles or special structures - can determine the performance of nanomaterials. In this paper, we study a model system, i.e. ``hot spots'' on a single Ag nanowire in the galvanic replacement reaction (GRR), by dark-field microscopy. The research reveals that electric charge can be released by the formation reaction of AgCl, and consequently the electrochemical potential on Ag nanowire drops. The electric charge could induce the reduction of Ag+ to form the ``hot spots'' on the nanowire during the GRR. The appearance probability of ``hot spots'' is almost even along the Ag nanowire, while it is slightly lower near the two ends. The spatial distance between adjacent ``hot spots'' is also controlled by the charge, and obeys a model based on Boltzmann distribution. In addition, the distance distribution here has an advantage in electron transfer and energy saving. Therefore, it's necessary to consider the functions of electric charge during the synthesis or application of nanomaterials.``Hot spots'' - a kind of highly active site, which are usually composed of some unique units, such as defects, interfaces, catalyst particles or special structures - can determine the performance of nanomaterials. In this paper, we study a model system, i.e. ``hot spots'' on a single Ag nanowire in the galvanic replacement reaction (GRR), by dark-field microscopy. The research reveals that electric charge can be released by the formation reaction of AgCl, and consequently the electrochemical potential on Ag nanowire drops. The electric charge could induce the reduction of Ag+ to form the ``hot spots'' on the nanowire during the GRR. The appearance probability of ``hot spots'' is almost even along the Ag nanowire, while it is slightly lower near the two ends. The spatial distance between adjacent ``hot spots'' is also controlled by the charge, and obeys a

  11. Hot Spot Detection System Using Landsat 8/OLI Data

    NASA Astrophysics Data System (ADS)

    Kato, S.; Nakamura, R.; Oda, A.; Iijima, A.; Kouyama, T.; Iwata, T.

    2015-12-01

    We developed a simple algorithm and a Web-based visualizing system to detect hot spots using Landsat 8 OLI multispectral data as one of the applications of the real-time processing of Landsat 8 data. An empirical equation and radiometric and reflective thresholds were derived to detect hot spots using the OLI data at band 5 (0.865 μm) and band 7 (2.200 μm) based on the increase in spectral radiance at shortwave infrared (SWIR) region due to the emission from objects with high surface temperature. We surveyed typical patterns of surface spectra using the ASTER spectral library to delineate a threshold to distinguish hot spots from background surfaces. To adjust the empirical coefficients of our detection algorithm, we visually inspected the detected hot spots using 6593 Landsat 8 scenes, which cover eastern part of East Asia, taken from January 1, 2014 to December 31, 2014, displayed on a dedicated Web GIS system. Eventually we determined threshold equations which can theoretically detect hot spots at temperatures above 230 °C over isothermal pixels and hot spots as small as 1 m2 at temperatures of 1000 °C as the lowest temperature and the smallest subpixel coverage, respectively, for daytime scenes. The algorithm detected hot spots including wildfires, volcanos, open burnings and factories. 30-m spatial resolution of Landsat 8 enabled to detect wild fires and open burnings accompanied by clearer shapes of fire front lines than MODIS and VIIRS fire products. Although the 16-day revisit cycle of Landsat 8 is too long to effectively find unexpected wildfire or outbreak of eruption, the revisit cycle is enough to monitor temporally stable heat sources, such as continually erupting volcanos and factories. False detection was found over building rooftops, which have relatively smooth surfaces at longer wavelengths, when specular reflection occurred at the satellite overpass.

  12. Biodiversity hot spot on a hot spot: novel extremophile diversity in Hawaiian fumaroles

    PubMed Central

    Wall, Kate; Cornell, Jennifer; Bizzoco, Richard W; Kelley, Scott T

    2015-01-01

    Fumaroles (steam vents) are the most common, yet least understood, microbial habitat in terrestrial geothermal settings. Long believed too extreme for life, recent advances in sample collection and DNA extraction methods have found that fumarole deposits and subsurface waters harbor a considerable diversity of viable microbes. In this study, we applied culture-independent molecular methods to explore fumarole deposit microbial assemblages in 15 different fumaroles in four geographic locations on the Big Island of Hawai'i. Just over half of the vents yielded sufficient high-quality DNA for the construction of 16S ribosomal RNA gene sequence clone libraries. The bacterial clone libraries contained sequences belonging to 11 recognized bacterial divisions and seven other division-level phylogenetic groups. Archaeal sequences were less numerous, but similarly diverse. The taxonomic composition among fumarole deposits was highly heterogeneous. Phylogenetic analysis found cloned fumarole sequences were related to microbes identified from a broad array of globally distributed ecotypes, including hot springs, terrestrial soils, and industrial waste sites. Our results suggest that fumarole deposits function as an “extremophile collector” and may be a hot spot of novel extremophile biodiversity. PMID:25565172

  13. Arabidopsis meiotic crossover hot spots overlap with H2A.Z nucleosomes at gene promoters.

    PubMed

    Choi, Kyuha; Zhao, Xiaohui; Kelly, Krystyna A; Venn, Oliver; Higgins, James D; Yelina, Nataliya E; Hardcastle, Thomas J; Ziolkowski, Piotr A; Copenhaver, Gregory P; Franklin, F Chris H; McVean, Gil; Henderson, Ian R

    2013-11-01

    PRDM9 directs human meiotic crossover hot spots to intergenic sequence motifs, whereas budding yeast hot spots overlap regions of low nucleosome density (LND) in gene promoters. To investigate hot spots in plants, which lack PRDM9, we used coalescent analysis of genetic variation in Arabidopsis thaliana. Crossovers increased toward gene promoters and terminators, and hot spots were associated with active chromatin modifications, including H2A.Z, histone H3 Lys4 trimethylation (H3K4me3), LND and low DNA methylation. Hot spot-enriched A-rich and CTT-repeat DNA motifs occurred upstream and downstream, respectively, of transcriptional start sites. Crossovers were asymmetric around promoters and were most frequent over CTT-repeat motifs and H2A.Z nucleosomes. Pollen typing, segregation and cytogenetic analysis showed decreased numbers of crossovers in the arp6 H2A.Z deposition mutant at multiple scales. During meiosis, H2A.Z forms overlapping chromosomal foci with the DMC1 and RAD51 recombinases. As arp6 reduced the number of DMC1 or RAD51 foci, H2A.Z may promote the formation or processing of meiotic DNA double-strand breaks. We propose that gene chromatin ancestrally designates hot spots within eukaryotes and PRDM9 is a derived state within vertebrates.

  14. Thermal Infrared Hot Spot and Dependence on Canopy Geometry

    NASA Technical Reports Server (NTRS)

    Smith, James A.; Ballard, Jerrell R., Jr.; Smith, David E. (Technical Monitor)

    2001-01-01

    We perform theoretical calculations of the canopy thermal infrared (TIR) hot spot using a first principles 3-D model described earlier. Various theoretical canopies of varying leaf size and for differing canopy height are used to illustrate the magnitude of the TIR effect. Our results are similar to predicted behavior in the reflective hot spot as a function of canopy geometry and comparable to TIR measurements from the literature and our own simple ground experiments. We apply the MODTRAN atmospheric code to estimate the at-sensor variation in brightness temperature with view direction in the solar principal plane. For simple homogeneous canopies, we predict canopy thermal infrared hot spot variations of 2 degrees C at the surface with respect to nadir viewing. Dependence on leaf size is weak as long as the ratio of leaf size to canopy height is maintained. However, the angular width of the hot spot increases as the ratio of leaf diameter to canopy height increases. Atmospheric effects minimize but do not eliminate the TIR hot spot at satellite altitudes.

  15. Integrating sustainable hunting in biodiversity protection in Central Africa: hot spots, weak spots, and strong spots.

    PubMed

    Fa, John E; Olivero, Jesús; Farfán, Miguel Ángel; Márquez, Ana Luz; Vargas, Juan Mario; Real, Raimundo; Nasi, Robert

    2014-01-01

    Wild animals are a primary source of protein (bushmeat) for people living in or near tropical forests. Ideally, the effect of bushmeat harvests should be monitored closely by making regular estimates of offtake rate and size of stock available for exploitation. However, in practice, this is possible in very few situations because it requires both of these aspects to be readily measurable, and even in the best case, entails very considerable time and effort. As alternative, in this study, we use high-resolution, environmental favorability models for terrestrial mammals (N = 165) in Central Africa to map areas of high species richness (hot spots) and hunting susceptibility. Favorability models distinguish localities with environmental conditions that favor the species' existence from those with detrimental characteristics for its presence. We develop an index for assessing Potential Hunting Sustainability (PHS) of each species based on their ecological characteristics (population density, habitat breadth, rarity and vulnerability), weighted according to restrictive and permissive assumptions of how species' characteristics are combined. Species are classified into five main hunting sustainability classes using fuzzy logic. Using the accumulated favorability values of all species, and their PHS values, we finally identify weak spots, defined as high diversity regions of especial hunting vulnerability for wildlife, as well as strong spots, defined as high diversity areas of high hunting sustainability potential. Our study uses relatively simple models that employ easily obtainable data of a species' ecological characteristics to assess the impacts of hunting in tropical regions. It provides information for management by charting the geography of where species are more or less likely to be at risk of extinction from hunting.

  16. Kilauea volcano: the degassing of a hot spot

    SciTech Connect

    Gerlach, T.M.

    1986-03-01

    Hot spots such as Kilauea volcano can degas by a one-stage eruptive process or a two-stage process involving eruptive and noneruptive degassing. One stage degassing occurs during sustained summit eruptions and causes a direct environmental impact. Although generally less efficient than the one-stage degassing process, two stage degassing can cause 1 to 2 orders of magnitude greater impact in just a few hours during flank eruptions. Hot spot volcanos with resupplied crustal magma chambers may be capable of maintaining an equivalent impact from CO/sub 2/ and S outgassing during both eruptive and noneruptive periods. On average, a hot spot volcano such as Kilauea is a minor polluter compared to man.

  17. Topolgy Agnostic Hot-Spot Avoidance with InfiniBand

    SciTech Connect

    Vishnu, Abhinav; Koop, Matthew J.; Moody, Adam; Mamidala, Amith; Narravula, Sundeep; Panda, Dhabaleswar K.

    2009-03-01

    InfiniBand has become a very popular interconnect, due to its advanced features and open standard. Large scale InfiniBand clusters are becoming very popular, as reflected by the TOP 500 supercomputer rankings. However, even with popular topologies like constant bi-section bandwidth Fat Tree, hot-spots may occur with InfiniBand, due to inappropriate configuration of network paths, presence of other jobs in the network and un-availability of adaptive routing. In this paper, we present a hot-spot avoidance layer (HSAL) for InfiniBand, which provides hot-spot avoidance using path bandwidth estimation and multi-pathing using LMC mechanism, without taking the network topology into account. We propose an adaptive striping policy with batch based striping and sorting approach, for efficient utilization of disjoint network paths. Integration of HSAL with MPI, the de facto programming model of clusters, shows promising results with collective communication primitives and MPI applications.

  18. Coulomb explosion of the hot spot of micropinches

    NASA Astrophysics Data System (ADS)

    Oreshkin, V. I.; Oreshkin, E. V.

    2017-01-01

    It has been shown that the generation of hard X-ray radiation, electron beam, and high energy ions that have been detected in experiments on compressing pinches can be related to the Coulomb explosion of a micropinch hot spot, which is formed due to the outflow of the material. In the outflow process, the plasma temperature in the hot spot increases and conditions appear for the transition of electrons to the regime of continuous acceleration. The exit of runaway electrons from the hot spot region leads to the creation of a positive bulk charge, then to a Coulomb explosion. Conditions under which electrons pass to the continuous acceleration regime have been determined and estimates of the ion kinetic energy upon a Coulomb explosion have been obtained.

  19. Effect of a hot spot on the strain response of an acoustically-loaded flat plate

    SciTech Connect

    Koval, L.R.; Jong, C.P.

    1989-01-01

    Previous studies of the acoustic fatigue of heated plates have treated uniformly-heated plates. The current study examines the effect of a 'hot spot' on the acoustic fatigue of a simply-supported flat plate. The hot spot is provided by a concentration of hot gas and is 'applied' to the plate through a convection boundary condition on the upper surface of the plate. For simplicity, the hot spot is assumed to be rectangular with its sides parallel to the sides of the plate. The size of the hot spot, the location of the hot spot, and the temperature of the hot spot were all varied to see their effects. 18 references.

  20. New 40Ar/39Ar age progression for the Louisville hot spot trail and implications for inter-hot spot motion

    NASA Astrophysics Data System (ADS)

    Koppers, Anthony A. P.; Gowen, Molly D.; Colwell, Lauren E.; Gee, Jeffrey S.; Lonsdale, Peter F.; Mahoney, John J.; Duncan, Robert A.

    2011-12-01

    In this study we present 42 new 40Ar/39Ar incremental heating age determinations that contribute to an updated age progression for the Louisville seamount trail. Louisville is the South Pacific counterpart to the Hawaiian-Emperor seamount trail, both trails representing intraplate volcanism over the same time interval (˜80 Ma to present) and being examples of primary hot spot lineaments. Our data provide evidence for an age-progressive trend from 71 to 21 Ma. Assuming fixed hot spots, this makes possible a direct comparison to the Hawaiian-Emperor age progression and the most recent absolute plate motion (APM) model (WK08G) of Wessel and Kroenke (2008). We observe that for the Louisville seamount trail the measured ages are systematically older relative to both the WK08G model predictions and Hawaiian seamount ages, with offsets ranging up to 6 Myr. Taking into account the uncertainty about the duration of eruption and magmatic succession at individual Louisville volcanoes, these age offsets should be considered minimum estimates, as our sampling probably tended to recover the youngest lava flows. These large deviations point to either a contribution of inter-hot spot motion between the Louisville and Hawaiian hot spots or to a more easterly location of the Louisville hot spot than the one inferred in the WK08G model. Both scenarios are investigated in this paper, whereby the more eastern hot spot location (52.0°S, 134.5°W versus 52.4°S, 137.2°W) reduces the average age offset, but still results in a relatively large maximum offset of 3.7 Myr. When comparing the new ages to the APM models (S04P, S04G) by Steinberger et al. (2004) that attempt to compensate for the motion of hot spots in the Pacific (Hawaii) or globally (Hawaii, Louisville, Reunion and Walvis), the measured and predicted ages are more in agreement, showing only a maximum offset of 2.3 Myr with respect to the S04G model. At face value these more advanced APM models, which consider both plate and

  1. Jumping-droplet electronics hot-spot cooling

    DOE PAGES

    Oh, Junho; Birbarah, Patrick; Foulkes, Thomas; ...

    2017-03-20

    Demand for enhanced cooling technologies within various commercial and consumer applications has increased in recent decades due to electronic devices becoming more energy dense. This study demonstrates jumping-droplet based electric-field-enhanced (EFE) condensation as a potential method to achieve active hot spot cooling in electronic devices. To test the viability of EFE condensation, we developed an experimental setup to remove heat via droplet evaporation from single and multiple high power gallium nitride (GaN) transistors acting as local hot spots (4.6 mm x 2.6 mm). An externally powered circuit was developed to direct jumping droplets from a copper oxide (CuO) nanostructured superhydrophobicmore » surface to the transistor hot spots by applying electric fields between the condensing surface and the transistor. Heat transfer measurements were performed in ambient air (22-25°C air temperature, 20-45% relative humidity) to determine the effect of gap spacing (2-4 mm), electric field (50-250 V/cm), and heat flux (demonstrated to 13 W/cm2). EFE condensation was shown to enhance the heat transfer from the local hot spot by ≈ 200% compared to cooling without jumping and by 20% compared to non-EFE jumping. Dynamic switching of the electric field for a two-GaN system reveals the potential for active cooling of mobile hot spots. The opportunity for further cooling enhancement by the removal of non-condensable gases promises hot spot heat dissipation rates approaching 120 W/cm2. Finally, this work provides a framework for the development of active jumping droplet based vapor chambers and heat pipes capable of spatial and temporal thermal dissipation control.« less

  2. Plasmonic electromagnetic hot spots temporally addressed by photoinduced molecular displacement.

    SciTech Connect

    Juan, M. L.; Plain, J.; Bachelot, R.; Vial, A.; Royer, P.; Gray, S. K.; Montgomery, J. M.; Wiederrecht, G. P.; Univ. de Technologie de Troyes

    2009-04-23

    We report the observation of temporally varying electromagnetic hot spots in plasmonic nanostructures. Changes in the field amplitude, position, and spatial features are induced by embedding plasmonic silver nanorods in the photoresponsive azo-polymer. This polymer undergoes cis?trans isomerization and wormlike transport within resonant optical fields, producing a time-varying local dielectric environment that alters the locations where electromagnetic hot spots are produced. Finite-difference time-domain and Monte Carlo simulations that model the induced field and corresponding material response are presented to aid in the interpretation of the experimental results. Evidence for propagating plasmons induced at the ends of the rods is also presented.

  3. Io hot spots - Infrared photometry of satellite occultations

    NASA Technical Reports Server (NTRS)

    Goguen, J. D.; Matson, D. L.; Sinton, W. M.; Howell, R. R.; Dyck, H. M.

    1988-01-01

    Io's active hot spots, which are presently mapped on the basis of IR photometry of this moon's occultation by other Gallilean satellites, are obtained with greatest spatial resolution near the sub-earth point. A model is developed for the occultation lightcurves, and its fitting to the data defines the apparent path of the occulting satellite relative to Io; the mean error in apparent relative position of occulting satellites is of the order of 178 km. A heretofore unknown, 20-km diameter hot spot is noted on Io's leading hemisphere.

  4. Magmatic effects of the Cobb hot spot on the Juan de Fuca Ridge

    USGS Publications Warehouse

    Chadwick, J.; Perfit, M.; Ridley, I.; Jonasson, I.; Kamenov, G.; Chadwick, W.; Embley, R.; le, Roux P.; Smith, M.

    2005-01-01

    The interaction of the Juan de Fuca Ridge with the Cobb hot spot has had a considerable influence on the magmatism of the Axial Segment of the ridge, the second-order segment that overlies the hot spot. In addition to the construction of the large volcanic edifice of Axial Seamount, the Axial Segment has shallow bathymetry and a prevalence of constructional volcanic features along its 100-km length, suggesting that hot spot-derived magmas supplement and oversupply the ridge. Lavas are generally more primitive at Axial Seamount and more evolved in the Axial Segment rift zones, suggesting that fractional crystallization is enhanced with increasing distance from the hot spot because of a reduced magma supply and more rapid cooling. Although the Cobb hot spot is not an isotopically enriched plume, it produces lavas with some distinct geochemical characteristics relative to normal mid-ocean ridge basalt, such as enrichments in alkalis and highly incompatible trace elements, that can be used as tracers to identify the presence and prevalence of the hot spot influence along the ridge. These characteristics are most prominent at Axial Seamount and decline in gradients along the Axial Segment. The physical model that can best explain the geochemical observations is a scenario in which hot spot and mid-ocean ridge basalt (MORB) magmas mix to varying degrees, with the proportions controlled by the depth to the MORB source. Modeling of two-component mixing suggests that MORB is the dominant component in most Axial Segment basalts. Copyright 2005 by the American Geophysical Union.

  5. Predictive Capability for Hot Spot Ignition of Double Base Propellants

    DTIC Science & Technology

    2009-08-01

    propellants are composed of nitrocellulose and stirred with a reactive plasticizer liquid nitrate ester such as nitroglycerine which also affects the oxygen...Predictive Capability for Hot Spot Ignition of Double Base Propellants by Stephan R. Bilyk ARL-RP-261 August 2009...Ignition of Double Base Propellants Stephan R. Bilyk Weapons and Materials Research Directorate, ARL A reprint from the 2006

  6. Antiferromagnetism and hot spots in CeIn3

    NASA Astrophysics Data System (ADS)

    Gor'Kov, L. P.; Grigoriev, P. D.

    2006-02-01

    Enormous mass enhancement at “hot spots” on the Fermi surface (FS) of CeIn3 has been reported at a strong magnetic field near its antiferromagnetic (AFM) quantum critical point [T. Ebihara , Phys. Rev. Lett. 93, 246401 (2004)] and ascribed to anomalous spin fluctuations at these spots. The hot spots lie at the positions on FS where in nonmagnetic LaIn3 the narrow necks are protruded. In paramagnetic phase, CeIn3 has similar spectrum. We show that in the presence of AFM ordering its FS undergoes a topological change at the onset of AFM order that truncates the necks at the hot spots for one of the branches. The applied field leads to the logarithmic divergence of the dHvA effective mass when the electron trajectory passes near or through the neck positions. This effect explains the observed dHvA mass enhancement at the hot spots and leads to interesting predictions concerning the spin dependence of the effective electron mass. The (T,B) -phase diagram of CeIn3 , constructed in terms of the Landau functional, is in agreement with experiment.

  7. Factors Influencing Phosphorous Cycling in Biogeochemical 'Hot Spots'

    NASA Astrophysics Data System (ADS)

    Saia, S. M.; Walter, M. T.; Buda, A. R.; Carrick, H. J.; Regan, J. M.

    2015-12-01

    Anthropogenic alteration of the phosphorus (P) cycle has led to subsequent soil and water quality issues. For example, P build up in soils due to historic fertilizer application may become biologically available and exacerbate eutrophication and anoxia in nearby water bodies. In the humid Northeastern United States, storm runoff transports P and also stimulates biogeochemical processes, these locations are termed biogeochemical 'hot spots'. Many studies have looked at nitrogen and carbon cycling in biogeochemical hot spots but few have focused on P. We hypothesize the periodic wetting and drying of biogeochemical hot spots promotes a combination of abiotic and biotic processes that influence the mobility of P. To test this hypothesis, we took monthly soil samples (5 cm deep) from May to October in forest, pasture, and cropped land near Ithaca, NY. In-situ measurements taken with each sample included volumetric soil moisture and soil temperature. We also analyzed samples for 'runoff generated' phosphate, nitrate, and sulfate (from 0.01 M CaCl2 extraction), Fe(II), percent organic matter, pH, as well as oxalate extractable and total P, Al, and Fe. We used linear mixed effects models to test how runoff generated phosphate concentrations vary with soil moisture and whether other environmental factors strengthen/weaken this relationship. The knowledge gained from this study will improve our understanding of P cycling in biogeochemical hot spots and can be used to improve the effectiveness of agricultural management practices in the Northeastern United States.

  8. Simulations of Electron Transport in Laser Hot Spots

    SciTech Connect

    S. Brunner; E. Valeo

    2001-08-30

    Simulations of electron transport are carried out by solving the Fokker-Planck equation in the diffusive approximation. The system of a single laser hot spot, with open boundary conditions, is systematically studied by performing a scan over a wide range of the two relevant parameters: (1) Ratio of the stopping length over the width of the hot spot. (2) Relative importance of the heating through inverse Bremsstrahlung compared to the thermalization through self-collisions. As for uniform illumination [J.P. Matte et al., Plasma Phys. Controlled Fusion 30 (1988) 1665], the bulk of the velocity distribution functions (VDFs) present a super-Gaussian dependence. However, as a result of spatial transport, the tails are observed to be well represented by a Maxwellian. A similar dependence of the distributions is also found for multiple hot spot systems. For its relevance with respect to stimulated Raman scattering, the linear Landau damping of the electron plasma wave is estimated for such VD Fs. Finally, the nonlinear Fokker-Planck simulations of the single laser hot spot system are also compared to the results obtained with the linear non-local hydrodynamic approach [A.V. Brantov et al., Phys. Plasmas 5 (1998) 2742], thus providing a quantitative limit to the latter method: The hydrodynamic approach presents more than 10% inaccuracy in the presence of temperature variations of the order delta T/T greater than or equal to 1%, and similar levels of deformation of the Gaussian shape of the Maxwellian background.

  9. Variability of Jupiter's Five-Micron Hot Spot Inventory

    NASA Technical Reports Server (NTRS)

    Yanamandra-Fisher, Padma A.; Orton, G. S.; Wakefield, L.; Rogers, J. H.; Simon-Miller, A. A.; Boydstun, K.

    2012-01-01

    Global upheavals on Jupiter involve changes in the albedo of entire axisymmetric regions, lasting several years, with the last two occurring in 1989 and 2006. Against this backdrop of planetary-scale changes, discrete features such as the Great Red Spot (GRS), and other vortices exhibit changes on shorter spatial- and time-scales. We track the variability of the discrete equatorial 5-micron hot spots, semi-evenly spaced in longitude and confined to a narrow latitude band centered at 6.5degN (southern edge of the North Equatorial Belt, NEB), abundant in Voyager images. Tantalizingly similar patterns were observed in the visible (bright plumes and blue-gray regions), where reflectivity in the red is anti-correlated with 5-microns thermal radiance. Ortiz et al. (1998, GRL, 103) characterized the latitude and drift rates of the hot spots, including the descent of the Galileo probe at the southern edge of a 5-micron hot spot, as the superposition of equatorial Rossby waves, with phase speeds between 99 - 103m/s, relative to System III. We note that the high 5-micron radiances correlate well but not perfectly with high 8.57-micron radiances. Because the latter are modulated primarily by changes in the upper ammonia (NH3) ice cloud opacity, this correlation implies that changes in the ammonia ice cloud field may be responsible for the variability seen in the 5-m maps. During the NEB fade (2011 - early 2012), however, these otherwise ubiquitous features were absent, an atmospheric state not seen in decades. The ongoing NEB revival indicates nascent 5-m hot spots as early as April 2012, with corresponding visible dark spots. Their continuing growth through July 2012 indicates the possit.le re-establishment of Rossby waves. The South Equatorial Belt (SEB) and NEB revivals began similarly with an instability that developed into a major outbreak, and many similarities in the observed propagation of clear regions.

  10. Extracting Hot spots of Topics from Time Stamped Documents.

    PubMed

    Chen, Wei; Chundi, Parvathi

    2011-07-01

    Identifying time periods with a burst of activities related to a topic has been an important problem in analyzing time-stamped documents. In this paper, we propose an approach to extract a hot spot of a given topic in a time-stamped document set. Topics can be basic, containing a simple list of keywords, or complex. Logical relationships such as and, or, and not are used to build complex topics from basic topics. A concept of presence measure of a topic based on fuzzy set theory is introduced to compute the amount of information related to the topic in the document set. Each interval in the time period of the document set is associated with a numeric value which we call the discrepancy score. A high discrepancy score indicates that the documents in the time interval are more focused on the topic than those outside of the time interval. A hot spot of a given topic is defined as a time interval with the highest discrepancy score. We first describe a naive implementation for extracting hot spots. We then construct an algorithm called EHE (Efficient Hot Spot Extraction) using several efficient strategies to improve performance. We also introduce the notion of a topic DAG to facilitate an efficient computation of presence measures of complex topics. The proposed approach is illustrated by several experiments on a subset of the TDT-Pilot Corpus and DBLP conference data set. The experiments show that the proposed EHE algorithm significantly outperforms the naive one, and the extracted hot spots of given topics are meaningful.

  11. Geochemical "Moats" around Near-ridge Hot Spots

    NASA Astrophysics Data System (ADS)

    Gale, A.; Langmuir, C. H.

    2015-12-01

    It has long been known that ridge basalts tend to become enriched in both isotopic and incompatible trace element ratios with proximity to a hot spot. Less recognized is that at a certain distance from the hot spot, samples are relatively depleted in moderately incompatible element ratios (e.g., Zr/Y, Dy/Yb) even as the enrichment in highly incompatible element ratios (e.g., Ba/La, La/Sm) persists. This leads in some cases to trace element patterns that are concave downward for moderately incompatible elements, indicating a depleted source, and concave upward for highly incompatible elements, indicating an enriched source. Clear offsets for samples near hot spots exist on plots such as Ba/La vs. Dy/Yb, and they also often have low Na8.0 for their depth. Areas where such geochemical characteristics occur are adjacent to hot spots—they form a kind of geochemical "moat" of combined depletion and enrichment. Moats can result from two sequential processes: first removal of a melt in the presence of garnet, leading to a source with low Dy/Yb, etc., followed by addition of a low-degree (low F) enriched melt to produce incompatible element and isotope enrichment. Two hypotheses for the moats are (1) they result from recent plume flow, where mantle that loses melt to the hot spot center is refertilized and enriched as it flows down the ridge. (2) Increased melting associated with a hot spot permits melting of ancient sources depleted by melt loss in the presence of garnet. High Hf isotopes for some moat samples from the N. Atlantic support model (2). Geochemical moats have global regularities. Using segment means from previous work, we show that the maximum distance of a moat segment from a hot spot correlates with plume flux normalized to spreading rate, with an R2 >0.9. A higher plume flux at slower spreading rates creates a larger moat. While high Hf isotopes are typical of N. Atlantic moat samples, this is not the case near Afar and Galapagos. This supports model (1

  12. Effects of EOS adiabat on hot spot dynamics

    NASA Astrophysics Data System (ADS)

    Cheng, Baolian; Kwan, Thomas; Wang, Yi-Ming; Batha, Steven

    2013-10-01

    Equation of state (EOS) and adiabat of the pusher play significant roles in the dynamics and formation of the hot spot of an ignition capsule. For given imploding energy, they uniquely determine the partition of internal energy, mass, and volume between the pusher and the hot spot. In this work, we apply the new scaling laws recently derived by Cheng et al. to the National Ignition Campaign (NIC) ignition capsules and study the impacts of EOS and adiabat of the pusher on the hot spot dynamics by using the EOS adiabat index as an adjustable model parameter. We compare our analysis with the NIC data, specifically, for shots N120321 and N120205, and with the numerical simulations of these shots. The predictions from our theoretical model are in good agreements with the NIC data when a hot adiabat was used for the pusher, and with code simulations when a cold adiabat was used for the pusher. Our analysis indicates that the actual adiabat of the pusher in NIC experiments may well be higher than the adiabat assumed in the simulations. This analysis provides a physical and systematic explanation to the ongoing disagreements between the NIC experimental results and the multi-dimensional numerical simulations. This work was performed under the auspices of the U.S. Department of Energy by the Los Alamos National Laboratory under contract number W-7405-ENG-36.

  13. Magnetic-Responsive Release Controlled by Hot Spot Effect.

    PubMed

    Guisasola, Eduardo; Baeza, Alejandro; Talelli, Marina; Arcos, Daniel; Moros, María; de la Fuente, Jesús M; Vallet-Regí, María

    2015-11-24

    Magnetically triggered drug delivery nanodevices have attracted great attention in nanomedicine, as they can feature as smart carriers releasing their payload at clinician's will. The key principle of these devices is based on the properties of magnetic cores to generate thermal energy in the presence of an alternating magnetic field. Then, the temperature increase triggers the drug release. Despite this potential, the rapid heat dissipation in living tissues is a serious hindrance for their clinical application. It is hypothesized that magnetic cores could act as hot spots, this is, produce enough heat to trigger the release without the necessity to increase the global temperature. Herein, a nanocarrier has been designed to respond when the temperature reaches 43 °C. This material has been able to release its payload under an alternating magnetic field without the need of increasing the global temperature of the environment, proving the efficacy of the hot spot mechanism in magnetic-responsive drug delivery devices.

  14. RAS gene hot-spot mutations in canine neoplasias.

    PubMed

    Richter, A; Murua Escobar, H; Günther, K; Soller, J T; Winkler, S; Nolte, I; Bullerdiek, J

    2005-01-01

    Point mutations in the cellular homologues HRAS, KRAS2, and NRAS of the viral Harvey and Kirsten rat sarcoma virus oncogenes are commonly involved in the onset of malignancies in humans and other species such as dog, mouse, and rat. Most often, three particular hot-spot codons are affected, with one amino acid exchange being sufficient for the induction of tumor growth. While RAS genes have been shown to play an important role in canine tumors such as non-small lung cell carcinomas, data about RAS mutations in canine fibrosarcomas as well as KRAS2 mutations in canine melanomas is sparse. To increase the number of tumors examined, we recently screened 13 canine fibrosarcomas and 11 canine melanomas for point mutations, particularly within the mutational hot spots. The results were compared to the already existing data from other studies about these tumors in dogs.

  15. Thermal imaging of hot spots in nanostructured microstripes

    NASA Astrophysics Data System (ADS)

    Saïdi, E.; Lesueur, J.; Aigouy, L.; Labéguerie-Egéa, J.; Mortier, M.

    2010-03-01

    By scanning thermal microscopy, we study the behavior of nanostructured metallic microstripes heated by Joule effect. Regularly spaced indentations have been made along the thin film stripe in order to create hot spots. For the designed stripe geometry, we observe that heat remains confined in the wire and in particular at shrinkage points within ~1μm2. Thermal maps have been obtained with a good lateral resolution (< 300nm) and a good temperature sensitivity (~1K).

  16. Astroparticle transport and yield in extragalactic jets and hot spots

    NASA Astrophysics Data System (ADS)

    Marcowith, A.; Casse, F.

    2005-02-01

    The present work discusses yield and transport of high-energy particle within extragalactic jet terminal shocks, also known as hotspots. These astrophysical sources are responsible for strong non-thermal synchrotron emission produced by relativistic electrons accelerated via a Fermi-type mechanism. We investigate in some details the cosmic ray, neutrinos and high-energy photons yield in hotspots of powerful FRII radio-galaxies by scanning all known spatial transport regimes, adiabatic and radiative losses as well as Fermi acceleration processes. Since both electrons and cosmic rays are prone to the same type of acceleration, we derive analytical estimates of the maximal cosmic ray energy attainable in both toroidal and poloidal magnetic field dominated shock structures by using observational data on synchrotron emission coming from various hot-spots. One of our main conclusions is that the best hot-spot candidates for high energy astroparticle production is the extended (LHS >= 1kpc), strongly magnetized (B > 0.1mG) terminal shock displaying synchrotron emission cut-off lying at least in the optical band. We found only one object (3C273A) over the six objects in our sample being capable to produce cosmic rays up to 1020 eV. We also show that the Bohm regime is unlikely to occur in the whole hot-spot since it would require unrealistically low jet velocities. We finally investigate the astroparticle yields of a characteric cosmic-ray loud hot-spot and compared them to the sensibilities of the future neutrinos and gamma-ray missions.

  17. Distinguishing black holes and wormholes with orbiting hot spots

    NASA Astrophysics Data System (ADS)

    Li, Zilong; Bambi, Cosimo

    2014-07-01

    The supermassive black hole candidates at the center of every normal galaxy might be wormholes created in the early Universe and connecting either two different regions of our Universe or two different universes in a multiverse model. Indeed, the origin of these supermassive objects is not well understood; topological nontrivial structures like wormholes are allowed both in general relativity and in alternative theories of gravity, and current observations cannot rule out such a possibility. In a few years, the VLTI instrument GRAVITY will have the capability to image blobs of plasma orbiting near the innermost stable circular orbit of SgrA*, the supermassive black hole candidate in the Milky Way. The secondary image of a hot spot orbiting around a wormhole is substantially different from that of a hot spot around a black hole, because the photon capture sphere of the wormhole is much smaller. The radius of the photon capture sphere is independent of the hot spot model, and therefore its possible detection, which is observationally challenging but not out of reach, can unambiguously test if the center of our Galaxy harbors a wormhole rather than a black hole.

  18. Climate impacts on global hot spots of marine biodiversity.

    PubMed

    Ramírez, Francisco; Afán, Isabel; Davis, Lloyd S; Chiaradia, André

    2017-02-01

    Human activities drive environmental changes at scales that could potentially cause ecosystem collapses in the marine environment. We combined information on marine biodiversity with spatial assessments of the impacts of climate change to identify the key areas to prioritize for the conservation of global marine biodiversity. This process identified six marine regions of exceptional biodiversity based on global distributions of 1729 species of fish, 124 marine mammals, and 330 seabirds. Overall, these hot spots of marine biodiversity coincide with areas most severely affected by global warming. In particular, these marine biodiversity hot spots have undergone local to regional increasing water temperatures, slowing current circulation, and decreasing primary productivity. Furthermore, when we overlapped these hot spots with available industrial fishery data, albeit coarser than our estimates of climate impacts, they suggest a worrying coincidence whereby the world's richest areas for marine biodiversity are also those areas mostly affected by both climate change and industrial fishing. In light of these findings, we offer an adaptable framework for determining local to regional areas of special concern for the conservation of marine biodiversity. This has exposed the need for finer-scaled fishery data to assist in the management of global fisheries if the accumulative, but potentially preventable, effect of fishing on climate change impacts is to be minimized within areas prioritized for marine biodiversity conservation.

  19. Hot spot management through design based metrology: measurement and filtering

    NASA Astrophysics Data System (ADS)

    Lee, Taehyeong; Yang, Hyunjo; Kim, Jungchan; Jung, Areum; Yoo, Gyun; Yim, Donggyu; Park, Sungki; Ishikawa, Akio; Yamamoto, Masahiro; Vikram, Abhishek

    2009-12-01

    Recently several Design Based Metrologies (DBMs) are introduced and being in use for wafer verification. The major applications of DBM are OPC accuracy improvement, DFM feed-back through Process Window Qualification (PWQ) and advanced process control. In general, however, the amount of output data from DBM is normally so large that it is very hard to handle the data for valuable feed-back. In case of PWQ, more than thousands of hot spots are detected on a single chip at the edge of process window. So, it takes much time and labor to review and analyze all the hot spots detected at PWQ. Design-related systematic defects, however, will be found repeatedly and if they can be classified into groups, it would be possible to save a lot of time for the analysis. We have demonstrated an EDA tool which can handle the large amount of output data from DBM by classifying pattern defects into groups. It can classify millions of patterns into less than thousands of pattern groups. It has been evaluated on the analysis of PWQ of metal layer in NAND Flash memory device and random contact hole patterns in a DRAM device. Also, verification was tuned to specific needs of the designer as well as defect analysis engineers by use of EDA tool's 'Pattern Matching Function'. The verification result was well within the required specification of the designer as well as the analysis engineer. The procedures of Hot Spot Management through Design Based Metrology are presented in detail.

  20. A pulsating auroral X-ray hot spot on Jupiter.

    PubMed

    Gladstone, G R; Waite, J H; Grodent, D; Lewis, W S; Crary, F J; Elsner, R F; Weisskopf, M C; Majeed, T; Jahn, J-M; Bhardwaj, A; Clarke, J T; Young, D T; Dougherty, M K; Espinosa, S A; Cravens, T E

    2002-02-28

    Jupiter's X-ray aurora has been thought to be excited by energetic sulphur and oxygen ions precipitating from the inner magnetosphere into the planet's polar regions. Here we report high-spatial-resolution observations that demonstrate that most of Jupiter's northern auroral X-rays come from a 'hot spot' located significantly poleward of the latitudes connected to the inner magnetosphere. The hot spot seems to be fixed in magnetic latitude and longitude and occurs in a region where anomalous infrared and ultraviolet emissions have also been observed. We infer from the data that the particles that excite the aurora originate in the outer magnetosphere. The hot spot X-rays pulsate with an approximately 45-min period, a period similar to that reported for high-latitude radio and energetic electron bursts observed by near-Jupiter spacecraft. These results invalidate the idea that jovian auroral X-ray emissions are mainly excited by steady precipitation of energetic heavy ions from the inner magnetosphere. Instead, the X-rays seem to result from currently unexplained processes in the outer magnetosphere that produce highly localized and highly variable emissions over an extremely wide range of wavelengths.

  1. Climate impacts on global hot spots of marine biodiversity

    PubMed Central

    Ramírez, Francisco; Afán, Isabel; Davis, Lloyd S.; Chiaradia, André

    2017-01-01

    Human activities drive environmental changes at scales that could potentially cause ecosystem collapses in the marine environment. We combined information on marine biodiversity with spatial assessments of the impacts of climate change to identify the key areas to prioritize for the conservation of global marine biodiversity. This process identified six marine regions of exceptional biodiversity based on global distributions of 1729 species of fish, 124 marine mammals, and 330 seabirds. Overall, these hot spots of marine biodiversity coincide with areas most severely affected by global warming. In particular, these marine biodiversity hot spots have undergone local to regional increasing water temperatures, slowing current circulation, and decreasing primary productivity. Furthermore, when we overlapped these hot spots with available industrial fishery data, albeit coarser than our estimates of climate impacts, they suggest a worrying coincidence whereby the world’s richest areas for marine biodiversity are also those areas mostly affected by both climate change and industrial fishing. In light of these findings, we offer an adaptable framework for determining local to regional areas of special concern for the conservation of marine biodiversity. This has exposed the need for finer-scaled fishery data to assist in the management of global fisheries if the accumulative, but potentially preventable, effect of fishing on climate change impacts is to be minimized within areas prioritized for marine biodiversity conservation. PMID:28261659

  2. Spatial distributions of sulphur species and sulphate-reducing bacteria provide insights into sulphur redox cycling and biodegradation hot-spots in a hydrocarbon-contaminated aquifer

    NASA Astrophysics Data System (ADS)

    Einsiedl, Florian; Pilloni, Giovanni; Ruth-Anneser, Bettina; Lueders, Tillman; Griebler, Christian

    2015-05-01

    Dissimilatory sulphate reduction (DSR) has been proven to be one of the most relevant redox reactions in the biodegradation of contaminants in groundwater. However, the possible role of sulphur species of intermediate oxidation state, as well as the role of potential re-oxidative sulphur cycling in biodegradation particularly at the groundwater table are still poorly understood. Here we used a combination of stable isotope measurements of SO42-, H2S, and S0 as well as geochemical profiling of sulphur intermediates with special emphasis on SO32-, S2O32-, and S0 to unravel possible sulphur cycling in the biodegradation of aromatics in a hydrocarbon-contaminated porous aquifer. By linking these results to the quantification of total bacterial rRNA genes and respiratory genes of sulphate reducers, as well as pyrotag sequencing of bacterial communities over depth, light is shed on possible key-organisms involved. Our results substantiate the role of DSR in biodegradation of hydrocarbons (mainly toluene) in the highly active plume fringes above and beneath the plume core. In both zones the concentration of sulphur intermediates (S0, SO32- and S2O32-) was almost twice that of other sampling-depths, indicating intense sulphur redox cycling. The dual isotopic fingerprint of oxygen and sulphur in dissolved sulphate suggested a re-oxidation of reduced sulphur compounds to sulphate especially at the upper fringe zone. An isotopic shift in δ34S of S0 of nearly +4‰ compared to the δ34S values of H2S from the same depth linked to a high abundance (∼10%) of sequence reads related to Sulphuricurvum spp. (Epsilonproteobacteria) in the same depth were indicative of intensive oxidation of S0 to sulphate in this zone. At the lower plume fringe S0 constituted the main inorganic sulphur species, possibly formed by abiotic re-oxidation of H2S with Fe(III)oxides subsequent to sulphate reduction. These results provide first insights into intense sulphur redox cycling in a hydrocarbon

  3. Photoproduct frequency is not the major determinant of UV base substitution hot spots or cold spots in human cells

    SciTech Connect

    Brash, D.E.; Seetharam, S.; Kraemer, K.H.; Seidman, M.M.; Bredberg, A.

    1987-06-01

    The role of UV radiation-induced photoproducts in initiating base substitution mutations in human cells was examined by measuring photoproduct frequency distributions and mutations in a supF tRNA gene on a shuttle vector plasmid transfected into DNA repair-deficient cells (xeroderma pigmentosum, complementation group A) and into normal cells. Frequencies of cyclobutane dimers and pyrimidine-pyrimidone (6-4) photoproducts varied by as much as 80-fold at different dipyrimidine sites within the gene. All transition mutations occurred at dipyrimidine sites, predominantly at cytosine, with a 17-fold variation in mutation frequency between different sites. Removal of greater than 99% of the cyclobutane dimers by in vitro photoreactivation before transfection reduced the mutation frequency while preserving the mutation distribution, indicating that (i) cytosine-containing cyclobutane dimers were the major mutagenic lesions at these sites and (ii) cytosine-containing non-cyclobutane dimer photoproducts were also mutagenic lesions. However, at individual dipyrimidine sites neither the frequency of cyclobutane dimers nor the frequency of pyrimidine-pyrimidone (6-4) photoproducts correlated with the mutation frequency, even in the absence of excision repair. Mutation hot spots occurred at sites with low or high frequency of photoproduct formation and mutation cold spots occurred at sites with many photoproducts. These results suggest that although photoproducts are required for UV mutagenesis, the prominence of most mutation hot spots and cold spots is primarily determined by DNA structural features rather than by the frequency of DNA photoproducts.

  4. Hot Spots and Hot Times: Wildlife Road Mortality in a Regional Conservation Corridor.

    PubMed

    Garrah, Evelyn; Danby, Ryan K; Eberhardt, Ewen; Cunnington, Glenn M; Mitchell, Scott

    2015-10-01

    Strategies to reduce wildlife road mortality have become a significant component of many conservation efforts. However, their success depends on knowledge of the temporal and spatial patterns of mortality. We studied these patterns along the 1000 Islands Parkway in Ontario, Canada, a 37 km road that runs adjacent to the St. Lawrence River and bisects the Algonquin-to-Adirondacks international conservation corridor. Characteristics of all vertebrate road kill were recorded during 209 bicycle surveys conducted from 2008 to 2011. We estimate that over 16,700 vertebrates are killed on the road from April to October each year; most are amphibians, but high numbers of birds, mammals, and reptiles were also found, including six reptiles considered at-risk in Canada. Regression tree analysis was used to assess the importance of seasonality, weather, and traffic on road kill magnitude. All taxa except mammals exhibited distinct temporal peaks corresponding to phases in annual life cycles. Variations in weather and traffic were only important outside these peak times. Getis-Ord analysis was used to identify spatial clusters of mortality. Hot spots were found in all years for all taxa, but locations varied annually. A significant spatial association was found between multiyear hot spots and wetlands. The results underscore the notion that multi-species conservation efforts must account for differences in the seasonality of road mortality among species and that multiple years of data are necessary to identify locations where the greatest conservation good can be achieved. This information can be used to inform mitigation strategies with implications for conservation at regional scales.

  5. Hot Spots and Hot Times: Wildlife Road Mortality in a Regional Conservation Corridor

    NASA Astrophysics Data System (ADS)

    Garrah, Evelyn; Danby, Ryan K.; Eberhardt, Ewen; Cunnington, Glenn M.; Mitchell, Scott

    2015-10-01

    Strategies to reduce wildlife road mortality have become a significant component of many conservation efforts. However, their success depends on knowledge of the temporal and spatial patterns of mortality. We studied these patterns along the 1000 Islands Parkway in Ontario, Canada, a 37 km road that runs adjacent to the St. Lawrence River and bisects the Algonquin-to-Adirondacks international conservation corridor. Characteristics of all vertebrate road kill were recorded during 209 bicycle surveys conducted from 2008 to 2011. We estimate that over 16,700 vertebrates are killed on the road from April to October each year; most are amphibians, but high numbers of birds, mammals, and reptiles were also found, including six reptiles considered at-risk in Canada. Regression tree analysis was used to assess the importance of seasonality, weather, and traffic on road kill magnitude. All taxa except mammals exhibited distinct temporal peaks corresponding to phases in annual life cycles. Variations in weather and traffic were only important outside these peak times. Getis-Ord analysis was used to identify spatial clusters of mortality. Hot spots were found in all years for all taxa, but locations varied annually. A significant spatial association was found between multiyear hot spots and wetlands. The results underscore the notion that multi-species conservation efforts must account for differences in the seasonality of road mortality among species and that multiple years of data are necessary to identify locations where the greatest conservation good can be achieved. This information can be used to inform mitigation strategies with implications for conservation at regional scales.

  6. Variation in the Deep Gas Composition in Hot Spots on Jupiter

    NASA Astrophysics Data System (ADS)

    Bjoraker, Gordon; de Pater, Imke; Wong, Michael H.; Adamkovics, Mate; Hewagama, Tilak; Hesman, Brigette

    2015-11-01

    We used CSHELL on NASA’s Infrared Telescope Facility and NIRSPEC on the Keck telescope in the last two years to spectrally resolve line profiles of CH3D, NH3, PH3, and H2O in 5-micron Hot Spots on Jupiter. The profile of the CH3D lines at 4.66 microns is very broad in both NEB and SEB Hot Spots due to collisions with up to 8 bars of H2, where unit optical depth occurs due to collision-induced H2 opacity. The extreme width of these CH3D features implies that the Hot Spots that we observed do not have significant cloud opacity for P > 2 bars. We retrieved NH3, PH3, and gaseous H2O within Hot Spots in both the NEB and SEB. We had dry nights on Mauna Kea and a sufficient Doppler shift to detect H2O. We will compare line wings to derive H2O profiles in the 2 to 6-bar region. NEB Hot Spots are depleted in NH3 with respect to adjacent regions. Interestingly, SEB Hot Spots exhibit stronger NH3 absorption than NEB Hot Spots. In addition, SEB Hot Spots have very similar 5-micron spectra as neighboring longitudes in the SEB, implying similar deep gas composition. The dynamical origin of SEB Hot Spots is much less studied than that of NEB Hot Spots, so our observations of gas composition in both regions may constrain mechanisms for forming Hot Spots.

  7. Anomalous ultrafast dynamics of hot plasmonic electrons in nanostructures with hot spots.

    PubMed

    Harutyunyan, Hayk; Martinson, Alex B F; Rosenmann, Daniel; Khorashad, Larousse Khosravi; Besteiro, Lucas V; Govorov, Alexander O; Wiederrecht, Gary P

    2015-09-01

    The interaction of light and matter in metallic nanosystems is mediated by the collective oscillation of surface electrons, called plasmons. After excitation, plasmons are absorbed by the metal electrons through inter- and intraband transitions, creating a highly non-thermal distribution of electrons. The electron population then decays through electron-electron interactions, creating a hot electron distribution within a few hundred femtoseconds, followed by a further relaxation via electron-phonon scattering on the timescale of a few picoseconds. In the spectral domain, hot plasmonic electrons induce changes to the plasmonic resonance of the nanostructure by modifying the dielectric constant of the metal. Here, we report on the observation of anomalously strong changes to the ultrafast temporal and spectral responses of these excited hot plasmonic electrons in hybrid metal/oxide nanostructures as a result of varying the geometry and composition of the nanostructure and the excitation wavelength. In particular, we show a large ultrafast, pulsewidth-limited contribution to the excited electron decay signal in hybrid nanostructures containing hot spots. The intensity of this contribution correlates with the efficiency of the generation of highly excited surface electrons. Using theoretical models, we attribute this effect to the generation of hot plasmonic electrons from hot spots. We then develop general principles to enhance the generation of energetic electrons through specifically designed plasmonic nanostructures that could be used in applications where hot electron generation is beneficial, such as in solar photocatalysis, photodetectors and nonlinear devices.

  8. Association of poly-purine/poly-pyrimidine sequences with meiotic recombination hot spots

    PubMed Central

    Bagshaw, Andrew TM; Pitt, Joel PW; Gemmell, Neil J

    2006-01-01

    Background Meiotic recombination events have been found to concentrate in 1–2.5 kilo base regions, but these recombination hot spots do not share a consensus sequence and why they occur at specific sites is not fully understood. Some previous evidence suggests that poly-purine/poly-pyrimidine (poly-pu/py) tracts (PPTs), a class of sequence with distinctive biochemical properties, could be involved in recombination, but no general association of PPTs with meiotic recombination hot spots has previously been reported. Results We used computational methods to investigate in detail the relationship between PPTs and hot spots. We show statistical associations of PPT frequency with hot spots of meiotic recombination initiating lesions, double-strand breaks, in the genome of the yeast S. cerevisiae and with experimentally well characterized human meiotic recombination hot spots. Supporting a possible role of poly-pu/py-rich sequences in hot spot recombination, we also found that all three single nucleotide polymorphisms previously shown to be associated with human hot spot activity changes occur within sequence contexts of 14 bp or longer that are 85% or more poly-pu/py and at least 70% G/C. These polymorphisms are all close to the hot spot mid points. Comparing the sequences of experimentally characterized human hot spots with the orthologous regions of the chimpanzee genome previously shown not to contain hot spots, we found that in all five cases in which comparisons for the hot spot central regions are possible with publicly available sequence data, there are differences near the human hot spot mid points within sequences 14 bp or longer consisting of more than 80% poly-pu/py and at least 50% G/C. Conclusion Our results, along with previous evidence for the unique biochemical properties and recombination-stimulating potential of poly-pu/py-rich sequences, suggest that the possible functional involvement of this type of sequence in meiotic recombination hot spots

  9. PEBBED ANALYSIS OF HOT SPOTS IN PEBBLE-BED REACTORS

    SciTech Connect

    Abderrafi M. Ougouag; Hans D. Gougar; William K. Terry; Frederik Reitsma; Wessel Joubert

    2005-09-01

    The Idaho National Laboratory’s PEBBED code and simple probability considerations are used to estimate the likelihood and consequences of the accumulation of highly reactive pebbles in the region of peak power in a pebble-bed reactor. The PEBBED code is briefly described, and the logic of the probability calculations is presented in detail. The results of the calculations appear to show that hot-spot formation produces only moderate increases in peak accident temperatures, and no increases at all in normal operating temperatures.

  10. Current-induced forces and hot spots in biased nanojunctions.

    PubMed

    Lü, Jing-Tao; Christensen, Rasmus B; Wang, Jian-Sheng; Hedegård, Per; Brandbyge, Mads

    2015-03-06

    We investigate theoretically the interplay of current-induced forces (CIFs), Joule heating, and heat transport inside a current-carrying nanoconductor. We find that the CIFs, due to the electron-phonon coherence, can control the spatial heat dissipation in the conductor. This yields a significant asymmetric concentration of excess heating (hot spot) even for a symmetric conductor. When coupled to the electrode phonons, CIFs drive different phonon heat flux into the two electrodes. First-principles calculations on realistic biased nanojunctions illustrate the importance of the effect.

  11. GEOMETRICAL CONSTRAINTS ON THE HOT SPOT IN BETA LYRAE

    SciTech Connect

    Lomax, Jamie R.; Hoffman, Jennifer L.; Elias II, Nicholas M.; Bastien, Fabienne A.; Holenstein, Bruce D. E-mail: Jennifer.Hoffman@du.edu E-mail: fabienne.a.bastien@vanderbilt.edu

    2012-05-01

    We present results from six years of recalibrated and new spectropolarimetric data taken with the University of Wisconsin's Half-Wave Spectropolarimeter and six years of new data taken with the photoelastic modulating polarimeter at the Flower and Cook Observatory of beta Lyrae. Combining these data with polarimetric data from the literature allows us to characterize the intrinsic BVRI polarized light curves. A repeatable discrepancy of 0.245 days (approximately 6 hr) between the secondary minima in the total light curve and the polarization curve in the V band, with similar behavior in the other bands, may represent the first direct evidence for an accretion hot spot on the disk edge.

  12. Omar field discovery confirms Syria as exploration hot spot

    SciTech Connect

    Not Available

    1988-06-20

    Syria is proving to be one of the Mediterranean's exploration hot spots. The discovery of Omar field by a Shell-led exploration group earlier this year confirmed Syria as a prime exploration prospect. For years Syria produced small volumes of heavy, high-sulfur crude mainly for refining and use in the domestic market and found it difficult to attract foreign explorers. Industry sources say there is now no shortage of outside industry interest in taking new exploration concessions. Over the last 6 months much of the available prospective acreage has been taken up as industry interest in Syria reached nee heights.

  13. Probing binding hot spots at protein–RNA recognition sites

    PubMed Central

    Barik, Amita; Nithin, Chandran; Karampudi, Naga Bhushana Rao; Mukherjee, Sunandan; Bahadur, Ranjit Prasad

    2016-01-01

    We use evolutionary conservation derived from structure alignment of polypeptide sequences along with structural and physicochemical attributes of protein–RNA interfaces to probe the binding hot spots at protein–RNA recognition sites. We find that the degree of conservation varies across the RNA binding proteins; some evolve rapidly compared to others. Additionally, irrespective of the structural class of the complexes, residues at the RNA binding sites are evolutionary better conserved than those at the solvent exposed surfaces. For recognitions involving duplex RNA, residues interacting with the major groove are better conserved than those interacting with the minor groove. We identify multi-interface residues participating simultaneously in protein–protein and protein–RNA interfaces in complexes where more than one polypeptide is involved in RNA recognition, and show that they are better conserved compared to any other RNA binding residues. We find that the residues at water preservation site are better conserved than those at hydrated or at dehydrated sites. Finally, we develop a Random Forests model using structural and physicochemical attributes for predicting binding hot spots. The model accurately predicts 80% of the instances of experimental ΔΔG values in a particular class, and provides a stepping-stone towards the engineering of protein–RNA recognition sites with desired affinity. PMID:26365245

  14. Probing binding hot spots at protein-RNA recognition sites.

    PubMed

    Barik, Amita; Nithin, Chandran; Karampudi, Naga Bhushana Rao; Mukherjee, Sunandan; Bahadur, Ranjit Prasad

    2016-01-29

    We use evolutionary conservation derived from structure alignment of polypeptide sequences along with structural and physicochemical attributes of protein-RNA interfaces to probe the binding hot spots at protein-RNA recognition sites. We find that the degree of conservation varies across the RNA binding proteins; some evolve rapidly compared to others. Additionally, irrespective of the structural class of the complexes, residues at the RNA binding sites are evolutionary better conserved than those at the solvent exposed surfaces. For recognitions involving duplex RNA, residues interacting with the major groove are better conserved than those interacting with the minor groove. We identify multi-interface residues participating simultaneously in protein-protein and protein-RNA interfaces in complexes where more than one polypeptide is involved in RNA recognition, and show that they are better conserved compared to any other RNA binding residues. We find that the residues at water preservation site are better conserved than those at hydrated or at dehydrated sites. Finally, we develop a Random Forests model using structural and physicochemical attributes for predicting binding hot spots. The model accurately predicts 80% of the instances of experimental ΔΔG values in a particular class, and provides a stepping-stone towards the engineering of protein-RNA recognition sites with desired affinity.

  15. Hot spot-derived shock initiation phenomena in heterogeneous nitromethane

    SciTech Connect

    Dattelbaum, Dana M; Sheffield, Stephen A; Stahl, David B; Dattelbaum, Andrew M

    2009-01-01

    The addition of solid silica particles to gelled nitromethane offers a tractable model system for interrogating the role of impedance mismatches as one type of hot spot 'seed' on the initiation behaviors of explosive formulations. Gas gun-driven plate impact experiments are used to produce well-defined shock inputs into nitromethane-silica mixtures containing size-selected silica beads at 6 wt%. The Pop-plots or relationships between shock input pressure and rundistance (or time)-to-detonation for mixtures containing small (1-4 {micro}m) and large (40 {micro}m) beads are presented. Overall, the addition of beads was found to influence the shock sensitivity of the mixtures, with the smaller beads being more sensitizing than the larger beads, lowering the shock initiation threshold for the same run distance to detonation compared with neat nitromethane. In addition, the use of embedded electromagnetic gauges provides detailed information pertaining to the mechanism of the build-up to detonation and associated reactive flow. Of note, an initiation mechanism characteristic of homogeneous liquid explosives, such as nitromethane, was observed in the nitromethane-40 {micro}m diameter silica samples at high shock input pressures, indicating that the influence of hot spots on the initiation process was minimal under these conditions.

  16. Detecting traffic hot spots using vehicle tracking data

    NASA Astrophysics Data System (ADS)

    Xu, Zhimin; Lin, Zhiyong; Zhou, Cheng; Huang, Changqing

    2016-03-01

    Vehicle tracking data for thousands of urban vehicles and the availability of digital map provide urban planners unprecedented opportunities for better understanding urban transportation. In this paper, we aim to detect traffic hot spots on urban road networks using vehicle tracking data. Our approach first proposes an integrated map-matching algorithm based on the road buffer and vehicle driving direction, to find out which road segment the vehicle is travelling on. Then, we estimate travel speed by calculating the average the speed of every vehicle on a certain road segment, which indicates traffic status, and create the spatial weights matrices based on the connectivity of road segments, which expresses the spatial dependence between each road segment. Finally, the measure of global and local spatial autocorrelation is used to evaluate the spatial distribution of the traffic condition and reveal the traffic hot spots on the road networks. Experiments based on the taxi tracking data and urban road network data from Wuhan have been performed to validate the detection effectiveness.

  17. Combined hot-spot stress procedures for tubular joints

    SciTech Connect

    Buitrayo, J.; Kahlich, J.L.; Zettlemoyer, N.

    1984-05-01

    An alternative procedure for predicting the combined hot-spot stress (CHSS) at tubular K and Y joints under combined branch loading is presented. The procedure makes use of influence factor (IF) equations developed, as a function of the joint geometry and branch loading, for various potential hot-spot locations on the branch and chord sides of the weld. The CHSS is obtained by lineraly superimposing, at a point, the effects of the axial force and bending moments acting on each branch. The resulting CHSS, therefore, reflects location, orientation and sign of each branch load contribution. Comparisons of predicted CHSS obtained via the new and other procedures to stresses from finite element analyses were made on a large sample of joints. Result show that (1) the new procedure is substantially more reliable than the other procedures studied, (2) none of the procedures consistently predicts conservative CHSS values, and (3) the overriding factor influencing the accuracy of the CHSS calculations appears to be the accuracy of the parametric equations. Although a better stress predictor can be expected to yield more reliable fatigue damage estimates, damage calculations will exhibit broad scatter due to the power function relating damage to stress. Unfortunately, further improvements in the accuracy of CHSS based on parametric equations are not likely to be easily achieved, given the large number of variables and locations that need to be considered.

  18. Hot spot detection for indecomposable self-aligned double patterning layout

    NASA Astrophysics Data System (ADS)

    Zhang, Hongbo; Du, Yuelin; Wong, Martin D. F.; Topaloglu, Rasit O.

    2011-11-01

    Self-aligned double patterning (SADP) lithography is a novel lithography technology which has the capability to define critical dimension (CD) using one single exposure, therefore holding a great opportunity for the next generation lithography process for the overlay mitigation. However, a necessary design manufacturing co-optimization step - the non-decomposability position detection (hot spot detection) - is still immature. In this paper, targeting the hot spot detection difficulties in SADP process, we first revisit out previous ILP-based SADP decomposition algorithm and provide an extended ILP-based hot spot detection without any preconditions on the design. Then, with some simple requirement that is commonly seen in 2D random layout, we further provided a graph based hot spot detection for an efficient hot spot detection. From the Nangate standard cell library, our experiment validates the hot spot detection process and demonstrates an SADP friendly design tyle is necessary for the upcoming 14nm technology node.

  19. Hot spots in energetic materials generated by infrared and ultrasound, detected by thermal imaging microscopy.

    PubMed

    Chen, Ming-Wei; You, Sizhu; Suslick, Kenneth S; Dlott, Dana D

    2014-02-01

    We have observed and characterized hot spot formation and hot-spot ignition of energetic materials (EM), where hot spots were created by ultrasonic or long-wavelength infrared (LWIR) exposure, and were detected by high-speed thermal microscopy. The microscope had 15-20 μm spatial resolution and 8.3 ms temporal resolution. LWIR was generated by a CO2 laser (tunable near 10.6 μm or 28.3 THz) and ultrasound by a 20 kHz acoustic horn. Both methods of energy input created spatially homogeneous energy fields, allowing hot spots to develop spontaneously due to the microstructure of the sample materials. We observed formation of hot spots which grew and caused the EM to ignite. The EM studied here consisted of composite solids with 1,3,5-trinitroperhydro-1,3,5-triazine crystals and polymer binders. EM simulants based on sucrose crystals in binders were also examined. The mechanisms of hot spot generation were different with LWIR and ultrasound. With LWIR, hot spots were most efficiently generated within the EM crystals at LWIR wavelengths having longer absorption depths of ∼25 μm, suggesting that hot spot generation mechanisms involved localized absorbing defects within the crystals, LWIR focusing in the crystals or LWIR interference in the crystals. With ultrasound, hot spots were primarily generated in regions of the polymer binder immediately adjacent to crystal surfaces, rather than inside the EM crystals.

  20. Modeling Hot-Spot Contributions in Shocked High Explosives at the Mesoscale

    SciTech Connect

    Harrier, Danielle

    2015-08-12

    When looking at performance of high explosives, the defects within the explosive become very important. Plastic bonded explosives, or PBXs, contain voids of air and bonder between the particles of explosive material that aid in the ignition of the explosive. These voids collapse in high pressure shock conditions, which leads to the formation of hot spots. Hot spots are localized high temperature and high pressure regions that cause significant changes in the way the explosive material detonates. Previously hot spots have been overlooked with modeling, but now scientists are realizing their importance and new modeling systems that can accurately model hot spots are underway.

  1. Multifrequency multi-qubit entanglement based on plasmonic hot spots

    PubMed Central

    Ren, Jun; Wu, Tong; Zhang, Xiangdong

    2015-01-01

    The theoretical method to study strong coupling between an ensemble of quantum emitters (QEs) and surface plasmons excited by the nanoparticle cluster has been presented by using a rigorous first-principles electromagnetic Green’s tensor technique. We have demonstrated that multi-qubit entanglements for two-level QEs can be produced at different coupling resonance frequencies, when they locate in the hot spots of the metallic nanoparticle cluster. The duration of quantum beats for such an entanglement can reach two orders longer than that for the entanglement in a photonic cavity. The phenomenon originates from collective coupling resonance excitation of the cluster. At the frequency of single scattering resonance, the entanglement cannot be produced although the single QE spontaneous decay rate is very big. PMID:26350051

  2. Predicting 'hot' and 'warm' spots for fragment binding.

    PubMed

    Rathi, Prakash Chandra; Ludlow, R Frederick; Hall, Richard John; Murray, Christopher W; Mortenson, Paul Neil; Verdonk, Marcel L

    2017-04-04

    Computational fragment mapping methods aim to predict hotspots on protein surfaces where small fragments will bind. Such methods are popular for druggability assessment as well as structure-based design. However, to date researchers developing or using such tools have had no clear way of assessing the performance of these methods. Here, we introduce the first diverse, high quality validation set for computational fragment mapping. The set contains 52 diverse examples of fragment binding 'hot' and 'warm' spots from the Protein Data Bank (PDB). Additionally, we describe PLImap, a novel protocol for fragment mapping based on the Protein-Ligand Interaction force field (PLIff). We evaluate PLImap against the new fragment mapping test set, and compare its performance to that of simple shape-based algorithms and fragment docking using GOLD. PLImap is made publicly available from https://bitbucket.org/AstexUK/pli.

  3. Multifrequency multi-qubit entanglement based on plasmonic hot spots

    NASA Astrophysics Data System (ADS)

    Ren, Jun; Wu, Tong; Zhang, Xiangdong

    2015-09-01

    The theoretical method to study strong coupling between an ensemble of quantum emitters (QEs) and surface plasmons excited by the nanoparticle cluster has been presented by using a rigorous first-principles electromagnetic Green’s tensor technique. We have demonstrated that multi-qubit entanglements for two-level QEs can be produced at different coupling resonance frequencies, when they locate in the hot spots of the metallic nanoparticle cluster. The duration of quantum beats for such an entanglement can reach two orders longer than that for the entanglement in a photonic cavity. The phenomenon originates from collective coupling resonance excitation of the cluster. At the frequency of single scattering resonance, the entanglement cannot be produced although the single QE spontaneous decay rate is very big.

  4. Ignition conditions relaxation for central hot-spot ignition with an ion-electron non-equilibrium model

    NASA Astrophysics Data System (ADS)

    Fan, Zhengfeng; Liu, Jie

    2016-10-01

    We present an ion-electron non-equilibrium model, in which the hot-spot ion temperature is higher than its electron temperature so that the hot-spot nuclear reactions are enhanced while energy leaks are considerably reduced. Theoretical analysis shows that the ignition region would be significantly enlarged in the hot-spot rhoR-T space as compared with the commonly used equilibrium model. Simulations show that shocks could be utilized to create and maintain non-equilibrium conditions within the hot spot, and the hot-spot rhoR requirement is remarkably reduced for achieving self-heating. In NIF high-foot implosions, it is observed that the x-ray enhancement factors are less than unity, which is not self-consistent and is caused by assuming Te =Ti. And from this non-consistency, we could infer that ion-electron non-equilibrium exists in the high-foot implosions and the ion temperature could be 9% larger than the equilibrium temperature.

  5. Hot spots created at skin-air interfaces during ultrasound hyperthermia.

    PubMed

    Hynynen, K

    1990-01-01

    It is well known that ultrasound beams will be completely reflected at a soft-tissue-gas interface. The reflected beam is contributing to the power absorption at the tissue interface and may cause a hot spot which could prevent therapeutic temperatures at the treatment volume. In this study the temperature elevation caused by a reflected ultrasound beam at the skin surface has been investigated in dogs' thighs in vivo. The magnitude of the hot spot was quantified and the effect of entrance angle was also investigated. In addition, the possibility of eliminating the hot spot by coupling the beam out of the tissue was studied. The results showed that the temperature elevation can be up to four times larger at the skin-air surface than in resting muscle under similar exposure. The geometry of the reflecting surface had a significant effect on the temperature distribution. When the sound was coupled out of the tissue the magnitude of the temperature elevation at the skin reduced to less than half (depending on the geometry) but was still larger than temperatures measured in muscle. These results suggest the need for computerized treatment planning for scanned focused ultrasound treatments.

  6. Rigorous assessment and integration of the sequence and structure based features to predict hot spots

    PubMed Central

    2011-01-01

    Background Systematic mutagenesis studies have shown that only a few interface residues termed hot spots contribute significantly to the binding free energy of protein-protein interactions. Therefore, hot spots prediction becomes increasingly important for well understanding the essence of proteins interactions and helping narrow down the search space for drug design. Currently many computational methods have been developed by proposing different features. However comparative assessment of these features and furthermore effective and accurate methods are still in pressing need. Results In this study, we first comprehensively collect the features to discriminate hot spots and non-hot spots and analyze their distributions. We find that hot spots have lower relASA and larger relative change in ASA, suggesting hot spots tend to be protected from bulk solvent. In addition, hot spots have more contacts including hydrogen bonds, salt bridges, and atomic contacts, which favor complexes formation. Interestingly, we find that conservation score and sequence entropy are not significantly different between hot spots and non-hot spots in Ab+ dataset (all complexes). While in Ab- dataset (antigen-antibody complexes are excluded), there are significant differences in two features between hot pots and non-hot spots. Secondly, we explore the predictive ability for each feature and the combinations of features by support vector machines (SVMs). The results indicate that sequence-based feature outperforms other combinations of features with reasonable accuracy, with a precision of 0.69, a recall of 0.68, an F1 score of 0.68, and an AUC of 0.68 on independent test set. Compared with other machine learning methods and two energy-based approaches, our approach achieves the best performance. Moreover, we demonstrate the applicability of our method to predict hot spots of two protein complexes. Conclusion Experimental results show that support vector machine classifiers are quite

  7. Hot-Spot Avoidance With Multi-Pathing Over Infiniband: An MPI Perspective

    SciTech Connect

    Vishnu, A; Koop, M; Moody, A; Mamidala, A R; Narravula, S; Panda, D K

    2007-03-06

    Large scale InfiniBand clusters are becoming increasingly popular, as reflected by the TOP 500 Supercomputer rankings. At the same time, fat tree has become a popular interconnection topology for these clusters, since it allows multiple paths to be available in between a pair of nodes. However, even with fat tree, hot-spots may occur in the network depending upon the route configuration between end nodes and communication pattern(s) in the application. To make matters worse, the deterministic routing nature of InfiniBand limits the application from effective use of multiple paths transparently and avoid the hot-spots in the network. Simulation based studies for switches and adapters to implement congestion control have been proposed in the literature. However, these studies have focused on providing congestion control for the communication path, and not on utilizing multiple paths in the network for hot-spot avoidance. In this paper, we design an MPI functionality, which provides hot-spot avoidance for different communications, without a priori knowledge of the pattern. We leverage LMC (LID Mask Count) mechanism of InfiniBand to create multiple paths in the network and present the design issues (scheduling policies, selecting number of paths, scalability aspects) of our design. We implement our design and evaluate it with Pallas collective communication and MPI applications. On an InfiniBand cluster with 48 processes, collective operations like MPI All-to-all Personalized and MPI Reduce Scatter show an improvement of 27% and 19% respectively. Our evaluation with MPI applications like NAS Parallel Benchmarks and PSTSWM on 64 processes shows significant improvement in execution time with this functionality.

  8. Dynamic programming-based hot spot identification approach for pedestrian crashes.

    PubMed

    Medury, Aditya; Grembek, Offer

    2016-08-01

    Network screening techniques are widely used by state agencies to identify locations with high collision concentration, also referred to as hot spots. However, most of the research in this regard has focused on identifying highway segments that are of concern to automobile collisions. In comparison, pedestrian hot spot detection has typically focused on analyzing pedestrian crashes in specific locations, such as at/near intersections, mid-blocks, and/or other crossings, as opposed to long stretches of roadway. In this context, the efficiency of the some of the widely used network screening methods has not been tested. Hence, in order to address this issue, a dynamic programming-based hot spot identification approach is proposed which provides efficient hot spot definitions for pedestrian crashes. The proposed approach is compared with the sliding window method and an intersection buffer-based approach. The results reveal that the dynamic programming method generates more hot spots with a higher number of crashes, while providing small hot spot segment lengths. In comparison, the sliding window method is shown to suffer from shortcomings due to a first-come-first-serve approach vis-à-vis hot spot identification and a fixed hot spot window length assumption.

  9. PRDM9 variation strongly influences recombination hot-spot activity and meiotic instability in humans.

    PubMed

    Berg, Ingrid L; Neumann, Rita; Lam, Kwan-Wood G; Sarbajna, Shriparna; Odenthal-Hesse, Linda; May, Celia A; Jeffreys, Alec J

    2010-10-01

    PRDM9 has recently been identified as a likely trans regulator of meiotic recombination hot spots in humans and mice. PRDM9 contains a zinc finger array that, in humans, can recognize a short sequence motif associated with hot spots, with binding to this motif possibly triggering hot-spot activity via chromatin remodeling. We now report that human genetic variation at the PRDM9 locus has a strong effect on sperm hot-spot activity, even at hot spots lacking the sequence motif. Subtle changes within the zinc finger array can create hot-spot nonactivating or enhancing variants and can even trigger the appearance of a new hot spot, suggesting that PRDM9 is a major global regulator of hot spots in humans. Variation at the PRDM9 locus also influences aspects of genome instability-specifically, a megabase-scale rearrangement underlying two genomic disorders as well as minisatellite instability-implicating PRDM9 as a risk factor for some pathological genome rearrangements.

  10. Hot spots on Io: Initial results from Galileo's near infrared mapping spectrometer

    USGS Publications Warehouse

    Lopes-Gautier, R.; Davies, A.G.; Carlson, R.; Smythe, W.; Kamp, L.; Soderblom, L.; Leader, F.E.; Mehlman, R.

    1997-01-01

    The Near-Infrared Mapping Spectrometer on Galileo has monitored the volcanic activity on Io since June 28, 1996. This paper presents preliminary analysis of NIMS thermal data for the first four orbits of the Galileo mission. NIMS has detected 18 new hot spots and 12 others which were previously known to be active. The distribution of the hot spots on Io's surface may not be random, as hot spots surround the two bright, SO2-rich regions of Bosphorus Regio and Colchis Regio. Most hot spots seem to be persistently active from orbit to orbit and 10 of those detected were active in 1979 during the Voyager encounters. We report the distribution of hot spot temperatures and find that they are consistent with silicate volcanism. Copyright 1997 by the American Geophysical Union.

  11. Experimental Study of Ignition by Hot Spot in Internal Combustion Engines

    NASA Technical Reports Server (NTRS)

    Serruys, Max

    1938-01-01

    In order to carry out the contemplated study, it was first necessary to provide hot spots in the combustion chamber, which could be measured and whose temperature could be changed. It seemed difficult to realize both conditions working solely on the temperature of the cooling water in a way so as to produce hot spots on the cylinder wall capable of provoking autoignition. Moreover, in the majority of practical cases, autoignition is produced by the spark plug, one of the least cooled parts in the engine. The first procedure therefore did not resemble that which most generally occurs in actual engine operation. All of these considerations caused us to reproduce similar hot spots at the spark plugs. The hot spots produced were of two kinds and designated with the name of thermo-electric spark plug and of metallic hot spot.

  12. Live-Cell Pyrophosphate Imaging by in Situ Hot-Spot Generation.

    PubMed

    Li, Mingmin; Li, Jin; Di, Huixia; Liu, Huiqiao; Liu, Dingbin

    2017-03-21

    Controlling the electromagnetic hot-spot generation is essential for surface-enhanced Raman scattering (SERS) assays. Current hot-spot-based SERS assays have been extensively studied in solutions or on substrates. However, probing biospecies by controlling the hot-spot assembly in living systems has not been demonstrated thus far. Herein, we report a background-free SERS probe for imaging pyrophosphate (PPi), a biochemically significant anion, in living cells. Intracellular PPi is able to induce the nanoparticle dimerization, thus creating an intense electromagnetic hot spot and dramatically enhancing the signal of the Raman reporters residing in the hot spot. More impressively, the reporter we used in this study provides a strong and sharp single peak in the cellular Raman-silent region (1800-2800 cm(-1)), thus eliminating the possible background interference. This strategy could be readily extended to detect other biomarkers by only replacing the recognition ligands.

  13. Advantages of Fast Ignition Scenarios with Two Hot Spots for Space Propulsion Systems

    NASA Astrophysics Data System (ADS)

    Shmatov, M. L.

    The use of the fast ignition scenarios with the attempts to create two hot spots in one blob of the compressed thermonuclear fuel or, briefly, scenarios with two hot spots in space propulsion systems is proposed. The model, predicting that for such scenarios the probability pf of failure of ignition of thermonuclear microexplosion can be significantly less than that for the similar scenarios with the attempts to create one hot spot in one blob of the compressed fuel, is presented. For space propulsion systems consuming a relatively large amount of propellant, a decrease in pf due to the choice of the scenario with two hot spots can result in large, for example, two-fold, increase in the payload mass. Other advantages of the scenarios with two hot spots and some problems related to them are considered.

  14. Hot-spot mix in ignition-scale implosions on the NIF [Hot-spot mix in ignition-scale implosions on the National Ignition Facility (NIF)

    SciTech Connect

    Regan, S. P.; Epstein, R.; Hammel, B. A.; Suter, L. J.; Ralph, J.; Scott, H.; Barrios, M. A.; Bradley, D. K.; Callahan, D. A.; Cerjan, C.; Collins, G. W.; Dixit, S. N.; Doeppner, T.; Edwards, M. J.; Farley, D. R.; Glenn, S.; Glenzer, S. H.; Golovkin, I. E.; Haan, S. W.; Hamza, A.; Hicks, D. G.; Izumi, N.; Kilkenny, J. D.; Kline, J. L.; Kyrala, G. A.; Landen, O. L.; Ma, T.; MacFarlane, J. J.; Mancini, R. C.; McCrory, R. L.; Meezan, N. B.; Meyerhofer, D. D.; Nikroo, A.; Peterson, K. J.; Sangster, T. C.; Springer, P.; Town, R. P. J.

    2012-03-30

    Ignition of an inertial confinement fusion (ICF) target depends on the formation of a central hot spot with sufficient temperature and areal density. Radiative and conductive losses from the hot spot can be enhanced by hydrodynamic instabilities. The concentric spherical layers of current National Ignition Facility (NIF) ignition targets consist of a plastic ablator surrounding 2 a thin shell of cryogenic thermonuclear fuel (i.e., hydrogen isotopes), with fuel vapor filling the interior volume. The Rev. 5 ablator is doped with Ge to minimize preheat of the ablator closest to the DT ice caused by Au M-band emission from the hohlraum x-ray drive. Richtmyer–Meshkov and Rayleigh–Taylor hydrodynamic instabilities seeded by high-mode (50 < t < 200) ablator-surface perturbations can cause Ge-doped ablator to mix into the interior of the shell at the end of the acceleration phase. As the shell decelerates, it compresses the fuel vapor, forming a hot spot. K-shell line emission from the ionized Ge that has penetrated into the hot spot provides an experimental signature of hot-spot mix. The Ge emission from tritium–hydrogen–deuterium (THD) and DT cryogenic targets and gas-filled plastic shell capsules, which replace the THD layer with a massequivalent CH layer, was examined. The inferred amount of hot-spot mix mass, estimated from the Ge K-shell line brightness using a detailed atomic physics code, is typically below the 75 ng allowance for hot-spot mix. Furthermore, predictions of a simple mix model, based on linear growth of the measured surface-mass modulations, are consistent with the experimental results.

  15. Hot-spot mix in ignition-scale implosions on the NIF [Hot-spot mix in ignition-scale implosions on the National Ignition Facility (NIF)

    DOE PAGES

    Regan, S. P.; Epstein, R.; Hammel, B. A.; ...

    2012-03-30

    Ignition of an inertial confinement fusion (ICF) target depends on the formation of a central hot spot with sufficient temperature and areal density. Radiative and conductive losses from the hot spot can be enhanced by hydrodynamic instabilities. The concentric spherical layers of current National Ignition Facility (NIF) ignition targets consist of a plastic ablator surrounding 2 a thin shell of cryogenic thermonuclear fuel (i.e., hydrogen isotopes), with fuel vapor filling the interior volume. The Rev. 5 ablator is doped with Ge to minimize preheat of the ablator closest to the DT ice caused by Au M-band emission from the hohlraummore » x-ray drive. Richtmyer–Meshkov and Rayleigh–Taylor hydrodynamic instabilities seeded by high-mode (50 < t < 200) ablator-surface perturbations can cause Ge-doped ablator to mix into the interior of the shell at the end of the acceleration phase. As the shell decelerates, it compresses the fuel vapor, forming a hot spot. K-shell line emission from the ionized Ge that has penetrated into the hot spot provides an experimental signature of hot-spot mix. The Ge emission from tritium–hydrogen–deuterium (THD) and DT cryogenic targets and gas-filled plastic shell capsules, which replace the THD layer with a massequivalent CH layer, was examined. The inferred amount of hot-spot mix mass, estimated from the Ge K-shell line brightness using a detailed atomic physics code, is typically below the 75 ng allowance for hot-spot mix. Furthermore, predictions of a simple mix model, based on linear growth of the measured surface-mass modulations, are consistent with the experimental results.« less

  16. Methodology and software to detect viral integration site hot-spots

    PubMed Central

    2011-01-01

    Background Modern gene therapy methods have limited control over where a therapeutic viral vector inserts into the host genome. Vector integration can activate local gene expression, which can cause cancer if the vector inserts near an oncogene. Viral integration hot-spots or 'common insertion sites' (CIS) are scrutinized to evaluate and predict patient safety. CIS are typically defined by a minimum density of insertions (such as 2-4 within a 30-100 kb region), which unfortunately depends on the total number of observed VIS. This is problematic for comparing hot-spot distributions across data sets and patients, where the VIS numbers may vary. Results We develop two new methods for defining hot-spots that are relatively independent of data set size. Both methods operate on distributions of VIS across consecutive 1 Mb 'bins' of the genome. The first method 'z-threshold' tallies the number of VIS per bin, converts these counts to z-scores, and applies a threshold to define high density bins. The second method 'BCP' applies a Bayesian change-point model to the z-scores to define hot-spots. The novel hot-spot methods are compared with a conventional CIS method using simulated data sets and data sets from five published human studies, including the X-linked ALD (adrenoleukodystrophy), CGD (chronic granulomatous disease) and SCID-X1 (X-linked severe combined immunodeficiency) trials. The BCP analysis of the human X-linked ALD data for two patients separately (774 and 1627 VIS) and combined (2401 VIS) resulted in 5-6 hot-spots covering 0.17-0.251% of the genome and containing 5.56-7.74% of the total VIS. In comparison, the CIS analysis resulted in 12-110 hot-spots covering 0.018-0.246% of the genome and containing 5.81-22.7% of the VIS, corresponding to a greater number of hot-spots as the data set size increased. Our hot-spot methods enable one to evaluate the extent of VIS clustering, and formally compare data sets in terms of hot-spot overlap. Finally, we show that the

  17. On the difficulty to delimit disease risk hot spots

    NASA Astrophysics Data System (ADS)

    Charras-Garrido, M.; Azizi, L.; Forbes, F.; Doyle, S.; Peyrard, N.; Abrial, D.

    2013-06-01

    Representing the health state of a region is a helpful tool to highlight spatial heterogeneity and localize high risk areas. For ease of interpretation and to determine where to apply control procedures, we need to clearly identify and delineate homogeneous regions in terms of disease risk, and in particular disease risk hot spots. However, even if practical purposes require the delineation of different risk classes, such a classification does not correspond to a reality and is thus difficult to estimate. Working with grouped data, a first natural choice is to apply disease mapping models. We apply a usual disease mapping model, producing continuous estimations of the risks that requires a post-processing classification step to obtain clearly delimited risk zones. We also apply a risk partition model that build a classification of the risk levels in a one step procedure. Working with point data, we will focus on the scan statistic clustering method. We illustrate our article with a real example concerning the bovin spongiform encephalopathy (BSE) an animal disease whose zones at risk are well known by the epidemiologists. We show that in this difficult case of a rare disease and a very heterogeneous population, the different methods provide risk zones that are globally coherent. But, related to the dichotomy between the need and the reality, the exact delimitation of the risk zones, as well as the corresponding estimated risks are quite different.

  18. Wafer hot spot identification through advanced photomask characterization techniques

    NASA Astrophysics Data System (ADS)

    Choi, Yohan; Green, Michael; McMurran, Jeff; Ham, Young; Lin, Howard; Lan, Andy; Yang, Richer; Lung, Mike

    2016-10-01

    As device manufacturers progress through advanced technology nodes, limitations in standard 1-dimensional (1D) mask Critical Dimension (CD) metrics are becoming apparent. Historically, 1D metrics such as Mean to Target (MTT) and CD Uniformity (CDU) have been adequate for end users to evaluate and predict the mask impact on the wafer process. However, the wafer lithographer's process margin is shrinking at advanced nodes to a point that the classical mask CD metrics are no longer adequate to gauge the mask contribution to wafer process error. For example, wafer CDU error at advanced nodes is impacted by mask factors such as 3-dimensional (3D) effects and mask pattern fidelity on subresolution assist features (SRAFs) used in Optical Proximity Correction (OPC) models of ever-increasing complexity. These items are not quantifiable with the 1D metrology techniques of today. Likewise, the mask maker needs advanced characterization methods in order to optimize the mask process to meet the wafer lithographer's needs. These advanced characterization metrics are what is needed to harmonize mask and wafer processes for enhanced wafer hot spot analysis. In this paper, we study advanced mask pattern characterization techniques and their correlation with modeled wafer performance.

  19. Concentration of Strontium-90 at Selected Hot Spots in Japan

    PubMed Central

    Steinhauser, Georg; Schauer, Viktoria; Shozugawa, Katsumi

    2013-01-01

    This study is dedicated to the environmental monitoring of radionuclides released in the course of the Fukushima nuclear accident. The activity concentrations of β− -emitting 90Sr and β−/γ-emitting 134Cs and 137Cs from several hot spots in Japan were determined in soil and vegetation samples. The 90Sr contamination levels of the samples were relatively low and did not exceed the Bq⋅g−1 range. They were up four orders of magnitude lower than the respective 137Cs levels. This study, therefore, experimentally confirms previous predictions indicating a low release of 90Sr from the Fukushima reactors, due to its low volatility. The radiocesium contamination could be clearly attributed to the Fukushima nuclear accident via its activity ratio fingerprint (134Cs/137Cs). Although the correlation between 90Sr and 137Cs is relatively weak, the data set suggests an intrinsic coexistence of both radionuclides in the contaminations caused by the Fukushima nuclear accident. This observation is of great importance not only for remediation campaigns but also for the current food monitoring campaigns, which currently rely on the assumption that the activity concentrations of β−-emitting 90Sr (which is relatively laborious to determine) is not higher than 10% of the level of γ-emitting 137Cs (which can be measured quickly). This assumption could be confirmed for the samples investigated herein. PMID:23505440

  20. Hot spot liver scan in focal nodular hyperplasia

    SciTech Connect

    Piers, D.A.; Houthoff, H.J.; Krom, R.A.F.; Schuur, K.H.; Sikkens, H.; Weits, J.

    1980-12-01

    In scintigraphy of the liver with radiocolloid, space-occupying lesions generally are visualized as regions of decreased accumulation of radioactivity. Rarely focal areas of increased activity are depicted; most are related to altered vascular dynamics in the liver secondary to obstruction of the superior or inferior vena cava or the hepatic veins. There are reports of single cases of focally increased activity due to a hepatic hemangioma, hepatic venoocclusive disease, herniation of a part of the liver, and a liver hot spot found after radiocolloid injection via a malpositioned central venous catheter in one of the hepatic vein branches. In patients with focal nodular hyperplasia, liver scans with solitary defects as well as normal patterns are found. In some cases, increased uptake of colloid in the lesion has been documented. Pasquier and Dorta reported a patient with a palpable mass in the left liver lobe with increased accumulation of radioactivity on the radiocolloid liver scan. The histologic diagnosis was hamartoma, but reviewing the description and considering the confusion in the past concerning the nomenclature, this case is suggestive of focal nodular hyperplasia. We report a patient with focal nodular hyperplasia who had increased radiocolloid uptake in the lesion. The radionuclide studies are compared with angiography, sonography, and computed tomography. An explanation for the localized increased colloid accumulation based on histologic findings is suggested.

  1. Hot spot generation in energetic materials created by long-wavelength infrared radiation

    SciTech Connect

    Chen, Ming-Wei; You, Sizhu; Suslick, Kenneth S.; Dlott, Dana D.

    2014-02-10

    Hot spots produced by long-wavelength infrared (LWIR) radiation in an energetic material, crystalline RDX (1,3,5-trinitroperhydro-1,3,5-triazine), were studied by thermal-imaging microscopy. The LWIR source was a CO{sub 2} laser operating in the 28-30 THz range. Hot spot generation was studied using relatively low intensity (∼100 W cm{sup −2}), long-duration (450 ms) LWIR pulses. The hot spots could be produced repeatedly in individual RDX crystals, to investigate the fundamental mechanisms of hot spot generation by LWIR, since the peak hot-spot temperatures were kept to ∼30 K above ambient. Hot spots were generated preferentially beneath RDX crystal planes making oblique angles with the LWIR beam. Surprisingly, hot spots were more prominent when the LWIR wavelength was tuned to be weakly absorbed (absorption depth ∼30 μm) than when the LWIR wavelength was strongly absorbed (absorption depth ∼5 μm). This unexpected effect was explained using a model that accounts for LWIR refraction and RDX thermal conduction. The weakly absorbed LWIR is slightly focused underneath the oblique crystal planes, and it penetrates the RDX crystals more deeply, increasing the likelihood of irradiating RDX defect inclusions that are able to strongly absorb or internally focus the LWIR beam.

  2. Potential Air Toxics Hot Spots in Truck Terminals and Cabs

    PubMed Central

    Smith, Thomas J.; Davis, Mary E.; Hart, Jaime E.; Blicharz, Andrew; Laden, Francine; Garshick, Eric

    2016-01-01

    INTRODUCTION Hot spots are areas where concentrations of one or more air toxics — organic vapors or particulate matter (PM) — are expected to be elevated. The U.S. Environmental Protection Agency’s (EPA*) screening values for air toxics were used in our definition of hot spots. According to the EPA, a screening value “is used to indicate a concentration of a chemical in the air to which a person could be continually exposed for a lifetime … and which would be unlikely to result in a deleterious effect (either cancer or noncancer health effects)” (U.S. EPA 2006). Our characterization of volatile organic compounds (VOCs; namely 18 hydrocarbons, methyl tert-butyl ether [MTBE], acetone, and aldehydes) was added onto our ongoing National Cancer Institute–funded study of lung cancer and particulate pollutant concentrations (PM with an aerodynamic diameter ≤ 2.5 µm [PM2.5], elemental carbon [EC], and organic carbon [OC]) and source apportionment of the U.S. trucking industry. We focused on three possible hot spots within the trucking terminals: upwind background areas affected by nearby industrial parks; downwind areas affected by upwind and terminal sources; and the loading docks and mechanic shops within terminal as well as the interior of cabs of trucks being driven on city, suburban, and rural streets and on highways. METHODS In Phase 1 of our study, 15 truck terminals across the United States were each visited for five consecutive days. During these site visits, sorbent tubes were used to collect 12-hour integrated samples of hydrocarbons and aldehydes from upwind and downwind fence-line locations as well as inside truck cabs. Meteorologic data and extensive site information were collected with each sample. In Phase 2, repeat visits to six terminals were conducted to test the stability of concentrations across time and judge the representativeness of our previous measurements. During the repeat site visits, the sampling procedure was expanded to

  3. Hot spot detection for breast cancer in Ki-67 stained slides: image dependent filtering approach

    NASA Astrophysics Data System (ADS)

    Niazi, M. Khalid Khan; Downs-Kelly, Erinn; Gurcan, Metin N.

    2014-03-01

    We present a new method to detect hot spots from breast cancer slides stained for Ki67 expression. It is common practice to use centroid of a nucleus as a surrogate representation of a cell. This often requires the detection of individual nuclei. Once all the nuclei are detected, the hot spots are detected by clustering the centroids. For large size images, nuclei detection is computationally demanding. Instead of detecting the individual nuclei and treating hot spot detection as a clustering problem, we considered hot spot detection as an image filtering problem where positively stained pixels are used to detect hot spots in breast cancer images. The method first segments the Ki-67 positive pixels using the visually meaningful segmentation (VMS) method that we developed earlier. Then, it automatically generates an image dependent filter to generate a density map from the segmented image. The smoothness of the density image simplifies the detection of local maxima. The number of local maxima directly corresponds to the number of hot spots in the breast cancer image. The method was tested on 23 different regions of interest images extracted from 10 different breast cancer slides stained with Ki67. To determine the intra-reader variability, each image was annotated twice for hot spots by a boardcertified pathologist with a two-week interval in between her two readings. A computer-generated hot spot region was considered a true-positive if it agrees with either one of the two annotation sets provided by the pathologist. While the intra-reader variability was 57%, our proposed method can correctly detect hot spots with 81% precision.

  4. Features of surface enhanced Raman scattering in the systems with «hot spots»

    NASA Astrophysics Data System (ADS)

    Solovyeva, E. V.; Khazieva, D. A.; Denisova, A. S.

    2016-12-01

    In this work we demonstrate the features of SERS on the substrates with «hot spots» on the example of system «diaminostilbene - colloidal silver». We found that «hot spots» forming on aggregated nanoparticles exist on the metal substrates only at low concentration of ligand. This effect caused by the gradual filling of first monolayer by adsorbate molecules. Significantly higher enhancement factor is obtained for substrates with «hot spots», for which the participation of resonance processes in the formation of SERS signal is revealed also.

  5. Studies of Hot Spots in Imploding Wire Arrays at 1 MA on COBRA

    SciTech Connect

    Pikuz, Sergey A.; Shelkovenko, Tatiana A.; McBride, Ryan D.; Hammer, David A.

    2009-01-21

    We present recent results from hot spot investigations in imploding Al wire array z-pinches on the COBRA generator at Cornell University using x-ray diagnostics. Measurements of the temporal and spatial distribution of hot spots in stagnating plasmas by an x-ray streak-camera are included. Experiments show that hot spots have nanosecond lifetime and appear randomly along the array axis after plasma stagnation in secondary pinches in 8 mm diameter and during plasma stagnation in the arrays with 4 mm diameter.

  6. Calculation of TIR Canopy Hot Spot and Implications for Earth Radiation Budget

    NASA Technical Reports Server (NTRS)

    Smith, J. A.; Ballard, J. R., Jr.

    2000-01-01

    Using a 3-D model for thermal infrared exitance and the Lowtran 7 atmospheric radiative transfer model, we compute the variation in brightness temperature with view direction and, in particular, the canopy thermal hot spot. We then perform a sensitivity analysis of surface energy balance components for a nominal case using a simple SVAT model given the uncertainty in canopy temperature arising from the thermal hot spot effect. Canopy thermal hot spot variations of two degrees C lead to differences of plus or minus 24% in the midday available energy.

  7. Ring of nine Gamma Ray Burst overlap with the hot spot of my hypothesis

    NASA Astrophysics Data System (ADS)

    Cao, Dayong

    2016-03-01

    During 2004 to 2014, a symmetry axis and a cold spot (a structure of one billion light years across) of CMB were observed, and I supposed there is a hot spot, and there is a symmetry between the cold spot and the hot spot of CMB. http://www.dailymail.co.uk/sciencetech/article-2430415 http://meetings.aps.org/link/BAPS.2014.MAR.Y33.9 In 2015, a Ring of Nine Gamma Ray Burst (a structure of FIVE BILLION light years across) which is a part of structure of double helix and overlap with the hot spot was observed. http://www.dailymail.co.uk/sciencetech/article-3185193 The Ring of Nine Gamma Ray Burst could be explained by the hot spot. There is a balance systemic model with structure of double helix of the flat universe between cold spot and hot spot-a balance between stellar matter and dark massenergy (include dark matter and dark energy). The model can explain of the Hubble's redshift. There is a larger dark hole instead of the huge black hole of the center of the Milky Way galaxy, and a dark hole builds up a balance system with sun. This model should explain of the seasonal Extinctions. http://meetings.aps.org/link/BAPS.2015.APR.H14.8

  8. Prediction of protein interaction hot spots using rough set-based multiple criteria linear programming.

    PubMed

    Chen, Ruoying; Zhang, Zhiwang; Wu, Di; Zhang, Peng; Zhang, Xinyang; Wang, Yong; Shi, Yong

    2011-01-21

    Protein-protein interactions are fundamentally important in many biological processes and it is in pressing need to understand the principles of protein-protein interactions. Mutagenesis studies have found that only a small fraction of surface residues, known as hot spots, are responsible for the physical binding in protein complexes. However, revealing hot spots by mutagenesis experiments are usually time consuming and expensive. In order to complement the experimental efforts, we propose a new computational approach in this paper to predict hot spots. Our method, Rough Set-based Multiple Criteria Linear Programming (RS-MCLP), integrates rough sets theory and multiple criteria linear programming to choose dominant features and computationally predict hot spots. Our approach is benchmarked by a dataset of 904 alanine-mutated residues and the results show that our RS-MCLP method performs better than other methods, e.g., MCLP, Decision Tree, Bayes Net, and the existing HotSprint database. In addition, we reveal several biological insights based on our analysis. We find that four features (the change of accessible surface area, percentage of the change of accessible surface area, size of a residue, and atomic contacts) are critical in predicting hot spots. Furthermore, we find that three residues (Tyr, Trp, and Phe) are abundant in hot spots through analyzing the distribution of amino acids.

  9. Magnetised accretion discs in Kerr spacetimes. II. Hot spots

    NASA Astrophysics Data System (ADS)

    García, Federico; Ranea-Sandoval, Ignacio F.; Johannsen, Tim

    2016-03-01

    Context. Quasi-periodic variability has been observed in a number of X-ray binaries that harbor black hole candidates. In general relativity, black holes are uniquely described by the Kerr metric and, according to the cosmic censorship conjecture, curvature singularities always have to be clothed by an event horizon. Aims: In this paper, we study the observed light curves that arise from orbiting hotspots in thin accretion discs around Kerr black holes and naked singularities, and the effect introduced by the presence of an external magnetic field. Methods: We employ a ray-tracing algorithm to calculate the light curves and power spectra of these hot spots as seen by a distant observer for uniform and dipolar magnetic field configurations, assuming a weak coupling between the magnetic field and the disc matter. Results: We show that the presence of an external dipolar magnetic field leads to potentially observable modifications of these light curves for both Kerr black holes and naked singularities, while an external uniform magnetic field has practically no effect. In particular, we demonstrate that the emission from a hotspot, which is orbiting near the innermost stable circular orbit of a naked singularity in a dipolar magnetic field, can be significantly harder than the emission of the same hotspot in the absence of this type of magnetic field. Conclusions: The comparison of our model with observational data may allow us to study the geometry of magnetic fields around compact objects and to test the cosmic censorship conjecture in conjunction with other observables, such as thermal continuum spectra and iron line profiles.

  10. Hot spot assisted blinking suppression of CdSe quantum dots

    NASA Astrophysics Data System (ADS)

    Lu, Liu; Tong, Xuan; Zhang, Xu; Ren, Naifei; Jiang, Bo; Lu, Haifei

    2016-05-01

    This work compares the blinking of CdSe QDs on glass, single silver nanowire, and double aligned nanowires. The corresponding on-time fractions of these three cases are 50%, 70% and 85% respectively, which indicates that aligned double nanowires shows more efficient suppression than that of single nanowire. This phenomenon is attributed to the higher concentration of hot electron from hot spot between nanowires. Occupation of the non-radiative recombination centers by hot electrons from silver nanowires can be explained for the suppressed blinking behavior. The result has provided a novel pathway of suppressing the blinking behavior of QDs through plasmonic hot spot.

  11. Ion distribution in the hot spot of an inertial confinement fusion plasma

    NASA Astrophysics Data System (ADS)

    Tang, Xianzhu; Guo, Zehua; Berk, Herb

    2012-10-01

    Maximizing the fusion gain of inertial confinement fusion (ICF) for inertial fusion energy (IFE) applications leads to the standard scenario of central hot spot ignition followed by propagating burn wave through the cold/dense assembled fuel. The fact that the hot spot is surrounded by cold but dense fuel layer introduces subtle plasma physics which requires a kinetic description. Here we perform Fokker-Planck calculations and kinetic PIC simulations for an ICF plasma initially in pressure balance but having large temperature gradient over a narrow transition layer. The loss of the fast ion tail from the hot spot, which is important for fusion reactivity, is quantified by Fokker-Planck models. The role of electron energy transport and the ambipolar electric field is investigated via kinetic simulations and the fluid moment models. The net effect on both hot spot ion temperature and the ion tail distribution, and hence the fusion reactivity, is elucidated.

  12. Controlling surface-plasmon-polaritons launching with hot spot cylindrical waves in a metallic slit structure

    NASA Astrophysics Data System (ADS)

    Yao, Wenjie; Sun, Chengwei; Gong, Qihuang; Chen, Jianjun

    2016-09-01

    Plasmonic nanostructures, which are used to generate surface plasmon polaritons (SPPs), always involve sharp corners where the charges can accumulate. This can result in strong localized electromagnetic fields at the metallic corners, forming the hot spots. The influence of the hot spots on the propagating SPPs are investigated theoretically and experimentally in a metallic slit structure. It is found that the electromagnetic fields radiated from the hot spots, termed as the hot spot cylindrical wave (HSCW), can greatly manipulate the SPP launching in the slit structure. The physical mechanism behind the manipulation of the SPP launching with the HSCW is explicated by a semi-analytic model. By using the HSCW, unidirectional SPP launching is experimentally realized in an ultra-small metallic step-slit structure. The HSCW bridges the localized surface plasmons and the propagating surface plasmons in an integrated platform and thus may pave a new route to the design of plasmonic devices and circuits.

  13. Calculation of the fast ion tail distribution for a spherically symmetric hot spot

    SciTech Connect

    McDevitt, C. J.; Tang, X.-Z.; Guo, Z.; Berk, H. L.

    2014-10-15

    The fast ion tail for a spherically symmetric hot spot is computed via the solution of a simplified Fokker-Planck collision operator. Emphasis is placed on describing the energy scaling of the fast ion distribution function in the hot spot as well as the surrounding cold plasma throughout a broad range of collisionalities and temperatures. It is found that while the fast ion tail inside the hot spot is significantly depleted, leading to a reduction of the fusion yield in this region, a surplus of fast ions is observed in the neighboring cold plasma region. The presence of this surplus of fast ions in the neighboring cold region is shown to result in a partial recovery of the fusion yield lost in the hot spot.

  14. Strong superchiral field in hot spots and its interaction with chiral molecules

    NASA Astrophysics Data System (ADS)

    Liu, Yineng

    We have found that strong superchiral fields created by surface plasmon resonance exist in hot spots of nonchiral plasmonic structure, which showed a chiral density greater than that of circularly polarized light by hundreds of times. We have demonstrated a direct correlation between the chirality of the local field and the circular dichroism (CD) response at the plasmon resonance bands induced by chiral molecules in the hot spots. Our results reveal that the wavelength-dependent superchiral fields in the hot spots can play a crucial role in the determination of the plasmonic CD effect. This finding is in contrast to the currently accepted physical model in which the electromagnetic field intensity in hot spots is a key factor to determine the peak intensity of the plasmonic CD spectrum. Some related experimental phenomena have been explained by using our theoretical analysis. The work was supported by the China National Natural Science Foundation (Grant No. 11504306).

  15. Hot-spot mix in ignition-scale inertial confinement fusion targets

    DOE PAGES

    Regan, S. P.; Epstein, R.; Hammel, B. A.; ...

    2013-07-22

    Mixing of plastic ablator material, doped with Cu and Ge dopants, deep into the hot spot of ignition-scale inertial confinement fusion implosions by hydrodynamic instabilities is diagnosed with x-ray spectroscopy on the National Ignition Facility. The amount of hot-spot mix mass is determined from the absolute brightness of the emergent Cu and Ge K-shell emission. The Cu and Ge dopants placed at different radial locations in the plastic ablator show the ablation-front hydrodynamic instability is primarily responsible for hot-spot mix. As a result, low neutron yields and hot-spot mix mass between 34(–13,+50) ng and 4000(–2970,+17 160) ng are observed.

  16. Flood basalts and hot-spot tracks: plume heads and tails.

    PubMed

    Richards, M A; Duncan, R A; Courtillot, V E

    1989-10-06

    Continental flood basalt eruptions have resulted in sudden and massive accumulations of basaltic lavas in excess of any contemporary volcanic processes. The largest flood basalt events mark the earliest volcanic activity of many major hot spots, which are thought to result from deep mantle plumes. The relative volumes of melt and eruption rates of flood basalts and hot spots as well as their temporal and spatial relations can be explained by a model of mantle plume initiation: Flood basalts represent plume "heads" and hot spots represent continuing magmatism associated with the remaining plume conduit or "tail." Continental rifting is not required, although it commonly follows flood basalt volcanism, and flood basalt provinces may occur as a natural consequence of the initiation of hot-spot activity in ocean basins as well as on continents.

  17. Absence of ras-gene hot-spot mutations in canine fibrosarcomas and melanomas.

    PubMed

    Murua Escobar, Hugo; Günther, Kathrin; Richter, Andreas; Soller, Jan T; Winkler, Susanne; Nolte, Ingo; Bullerdiek, Jörn

    2004-01-01

    Point mutations within ras proto-oncogenes, particularly within the mutational hot-spot codons 12, 13 and 61, are frequently detected in human malignancies and in different types of experimentally-induced tumours in animals. So far little is known about ras mutations in naturally occurring canine fibrosarcomas or K-ras mutations in canine melanomas. To elucidate whether ras mutations exist in these naturally occurring tumours in dogs, in the present study we screened 13 canine fibrosarcomas, 2 feline fibrosarcomas and 11 canine melanomas for point mutations, particularly within the mutational hot-spots, making this the first study to investigate a large number of canine fibrosarcomas. None of the samples showed a K- or N-ras hot spot mutation. Thus, our data strongly suggest that ras mutations at the hot-spot loci are very rare and do not play a major role in the pathogenesis of the spontaneously occurring canine tumours investigated.

  18. Microstructure origin of hot spots in textured laser zone melting Bi-2212 monoliths

    NASA Astrophysics Data System (ADS)

    Lera, F.; Angurel, L. A.; Rojo, J. A.; Mora, M.; Recuero, S.; Arroyo, M. P.; Andrés, N.

    2005-11-01

    Hot spots are one of the main limitations in the development of large-scale high-power applications with superconducting materials. The application of digital speckle interferometry to detect inhomogeneous heating on ceramic superconductors allows the determining of a hot spot location in these materials before any damage is caused to the material. The technique detects deformations that are induced in the material due to dilatation, attaining a resolution of 0.45 µm /fringe. In this paper this technique has been applied to analyse the heating generation in Bi-2212 superconducting monoliths at room temperature and in operation conditions. In the first case a homogeneous heating is obtained, leading to a parallel fringe pattern. In the second case, a situation with an inhomogeneous heating origin has been detected. Once the position of this hot spot is determined, microstructure studies have been performed to determine which defects are responsible for hot spot generation.

  19. The hot-spot environment of SW Sex in a low state

    NASA Astrophysics Data System (ADS)

    Groot, Paul J.; Rutten, René G. M.; van Paradijs, Jan

    2000-04-01

    Based on observations obtained with the 2.5m Isaac Newton Telescope we show that the characteristics of the SW Sex stars can be explained by the dominance of a `hot-spot' like feature in the accretion disk. In SW Sex this `hot-spot' region is located at a distance of 0.5 RL 1 from the white-dwarf and is best visible at phase ϕ=0.95. The location of the hot-spot as deduced from spectral eclipse mapping coincides with the formation site of the main emission lines. We deduce that this hot-spot region is formed by a shock, which we speculate to be the consequence of a high mass-transfer rate and a long spin-period of the non-magnetic white dwarf.

  20. Modeling heterogeneous high explosive burn with an explicit hot-spot process

    SciTech Connect

    Tang, P.K.; Johnson, J.N.; Forest, C.A.

    1985-01-01

    We present a method of treating high explosive burn with a multi-step process which includes the hot-spot excitation, decomposition, and the propagation of reaction into the region outside the hot spots. The basic features of this model are the separation of the thermal-mechanical and chemical processes, and the partition of the explosive into hot spots and the region exclusive of the hot spots. The thermal-mechanical aspects are formulated in a way similar to the chemical process. The combined processes lead to a set of rate equations for the mass fractions of reactants, intermediate states, and final products. The rates are expressed initially in terms of general characteristic times, but with specific phenomenological correlations introduced in the final model. Computational examples are given of simulated flyer plate impacts, short-shock initiation, corner turning, and shock desensitization. 19 refs., 9 figs.

  1. A healthcare utilization analysis framework for hot spotting and contextual anomaly detection.

    PubMed

    Hu, Jianying; Wang, Fei; Sun, Jimeng; Sorrentino, Robert; Ebadollahi, Shahram

    2012-01-01

    Patient medical records today contain vast amount of information regarding patient conditions along with treatment and procedure records. Systematic healthcare resource utilization analysis leveraging such observational data can provide critical insights to guide resource planning and improve the quality of care delivery while reducing cost. Of particular interest to providers are hot spotting: the ability to identify in a timely manner heavy users of the systems and their patterns of utilization so that targeted intervention programs can be instituted, and anomaly detection: the ability to identify anomalous utilization cases where the patients incurred levels of utilization that are unexpected given their clinical characteristics which may require corrective actions. Past work on medical utilization pattern analysis has focused on disease specific studies. We present a framework for utilization analysis that can be easily applied to any patient population. The framework includes two main components: utilization profiling and hot spotting, where we use a vector space model to represent patient utilization profiles, and apply clustering techniques to identify utilization groups within a given population and isolate high utilizers of different types; and contextual anomaly detection for utilization, where models that map patient's clinical characteristics to the utilization level are built in order to quantify the deviation between the expected and actual utilization levels and identify anomalies. We demonstrate the effectiveness of the framework using claims data collected from a population of 7667 diabetes patients. Our analysis demonstrates the usefulness of the proposed approaches in identifying clinically meaningful instances for both hot spotting and anomaly detection. In future work we plan to incorporate additional sources of observational data including EMRs and disease registries, and develop analytics models to leverage temporal relationships among

  2. A Healthcare Utilization Analysis Framework for Hot Spotting and Contextual Anomaly Detection

    PubMed Central

    Hu, Jianying; Wang, Fei; Sun, Jimeng; Sorrentino, Robert; Ebadollahi, Shahram

    2012-01-01

    Patient medical records today contain vast amount of information regarding patient conditions along with treatment and procedure records. Systematic healthcare resource utilization analysis leveraging such observational data can provide critical insights to guide resource planning and improve the quality of care delivery while reducing cost. Of particular interest to providers are hot spotting: the ability to identify in a timely manner heavy users of the systems and their patterns of utilization so that targeted intervention programs can be instituted, and anomaly detection: the ability to identify anomalous utilization cases where the patients incurred levels of utilization that are unexpected given their clinical characteristics which may require corrective actions. Past work on medical utilization pattern analysis has focused on disease specific studies. We present a framework for utilization analysis that can be easily applied to any patient population. The framework includes two main components: utilization profiling and hot spotting, where we use a vector space model to represent patient utilization profiles, and apply clustering techniques to identify utilization groups within a given population and isolate high utilizers of different types; and contextual anomaly detection for utilization, where models that map patient’s clinical characteristics to the utilization level are built in order to quantify the deviation between the expected and actual utilization levels and identify anomalies. We demonstrate the effectiveness of the framework using claims data collected from a population of 7667 diabetes patients. Our analysis demonstrates the usefulness of the proposed approaches in identifying clinically meaningful instances for both hot spotting and anomaly detection. In future work we plan to incorporate additional sources of observational data including EMRs and disease registries, and develop analytics models to leverage temporal relationships among

  3. Avoiding Carbon Bed Hot Spots in Thermal Process Off-Gas Systems

    SciTech Connect

    Nick Soelberg; Joe Enneking

    2011-05-01

    Mercury has had various uses in nuclear fuel reprocessing and other nuclear processes, and so is often present in radioactive and mixed (radioactive and hazardous) wastes. Test programs performed in recent years have shown that mercury in off-gas streams from processes that treat radioactive wastes can be controlled using fixed beds of activated sulfur-impregnated carbon, to levels low enough to comply with air emission regulations such as the Hazardous Waste Combustor (HWC) Maximum Achievable Control Technology (MACT) standards. Carbon bed hot spots or fires have occurred several times during these tests, and also during a remediation of tanks that contained mixed waste. Hot spots occur when localized areas in a carbon bed become heated to temperatures where oxidation occurs. This heating typically occurs due to heat of absoption of gas species onto the carbon, but it can also be caused through external means such as external heaters used to heat the carbon bed vessel. Hot spots, if not promptly mitigated, can grow into bed fires. Carbon bed hot spots and fires must be avoided in processes that treat radioactive and mixed waste. Hot spots are detected by (a) monitoring in-bed and bed outlet gas temperatures, and (b) more important, monitoring of bed outlet gas CO concentrations. Hot spots are mitigated by (a) designing for appropriate in-bed gas velocity, for avoiding gas flow maldistribution, and for sufficient but not excessive bed depth, (b) appropriate monitoring and control of gas and bed temperatures and compositions, and (c) prompt implementation of corrective actions if bed hot spots are detected. Corrective actions must be implemented quickly if bed hot spots are detected, using a graded approach and sequence starting with corrective actions that are simple, quick, cause the least impact to the process, and are easiest to recover from.

  4. Understanding and controlling hot spots of crime: the importance of formal and informal social controls.

    PubMed

    Weisburd, David; Groff, Elizabeth R; Yang, Sue-Ming

    2014-02-01

    Primary, secondary, and tertiary prevention programs that address opportunity or structural factors related to crime are usually delivered to entire cities, sections of cities or to specific neighborhoods, but our results indicate geographically targeting these programs to specific street segments may increase their efficacy. We link crime incidents to over 24,000 street segments (the two block faces on a street between two intersections) over a 16-year period, and identify distinct developmental patterns of crime at street segments using group-based trajectory analysis. One of these patterns, which we term chronic crime hot spots, includes just 1 % of street segments but is associated with 23 % of crime in the city during the study period. We then employ multinomial regression to identify the specific risk and protective factors that are associated with these crime hot spots. We find that both situational opportunities and social characteristics of places strongly distinguish chronic crime hot spots from areas with little crime. Our findings support recent efforts to decrease crime opportunities at crime hot spots through programs like hot spots policing, but they also suggest that social interventions directed at crime hot spots will be important if we are to do something about crime problems in the long run. We argue in concluding that micro level programs which focus crime prevention efforts on specific street segments have the potential to be less costly and more effective than those targeted at larger areas such as communities or neighborhoods.

  5. Microwave interrogation of an air plasma plume as a model system for hot spots in explosives

    NASA Astrophysics Data System (ADS)

    Kane, Ronald J.; Tringe, Joseph W.; Klunder, Gregory L.; Baluyot, Emer V.; Densmore, John M.; Converse, Mark C.

    2017-01-01

    The evolution of hot spots within explosives is critical to understand for predicting how detonation waves form and propagate. However, it is challenging to observe hot spots directly because they are small (˜micron diameter), form quickly (much less than a microsecond), and many explosives of interest are optically opaque. Microwaves are well-suited to characterize hot spots because they readily penetrate most explosives. They also have sufficient temporal and spatial resolution to measure the coalescence of an ensemble of hot spots inside explosives. Here we employ 94 GHz microwaves to characterize the evolution of individual plasma plumes formed by laser ionization of air. We use interferometry to obtain plume diameter as a function of time. Although the plasma plumes are larger than individual hot spots in explosives, they expand rapidly and predictably, and their structure can be optically imaged. They are therefore useful model systems to establish the spatial and temporal limits of microwave interferometry (MI) for understanding more complex hot spot behavior in solid explosives.

  6. Microwave interrogation of an air plasma plume as a model system for hot spots in explosives

    NASA Astrophysics Data System (ADS)

    Kane, Ron; Tringe, Joseph; Klunder, Greg; Baluyot, Emer; Densmore, John; Converse, Mark

    2015-06-01

    The evolution of hot spots within explosives is critical to understand for predicting how detonation waves form and propagate. However, it is challenging to observe hot spots directly because they are small (~ micron diameter), form quickly (much less than a microsecond), and many explosives of interest are optically opaque. Microwaves are well-suited to characterize hot spots because they readily penetrate most explosives. They also have sufficient temporal and spatial resolution to measure the coalescence of an ensemble of hot spots inside explosives. Here we employ 94 GHz microwaves to characterize the evolution of individual plasma plumes formed by laser ionization of air. We use interferometry to obtain velocity records as a function of plume position and orientation. Although the plasma plumes are larger than individual hot spots in explosives, they expand rapidly and predictably, and their structure can be optically imaged. They are therefore useful model systems to establish the spatial and temporal limits of microwave interferometry (MI) for understanding more complex hot spot behavior in solid explosives. This work performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.

  7. Acoustic timescale characterization of hot spot ignition in thermally stratified mixtures

    NASA Astrophysics Data System (ADS)

    Reinbacher, Fynn; Regele, Jonathan

    2015-11-01

    Thermal stratification and the formation of hot spots in reactive mixtures are of key interest to characterize the autoignition behavior of charges in internal combustion engines. Critical gradient conditions and local maximum sizes of a finite hot spot centers can be used to describe such a hot spot. In previous work, one- and two-dimensional hot spots consisting of a linear temperature gradient and constant plateau have been characterized on an acoustic timescale. In the present work, random one-dimensional temperature fields, derived from Fourier superposition for temperature fluctuations with a temperature spectrum similar to Passot-Pouquet kinetic energy spectrum, are analyzed. The linear gradient constant plateau model is compared to a more realistic hot spot temperature profile. Hot spots in the one-dimensional temperature fields are modeled with linear gradients and constant plateaus in order to be characterized with acoustic time scale analysis. Probability distributions for different excitation-to-acoustic timescale ratios are calculated for a range of engine conditions.

  8. Proposed NIF Experiments to Explore Convergence Ratio and Robustness of Hot Spot Formation in DT Liquid Layer HDC Capsules

    NASA Astrophysics Data System (ADS)

    Olson, R.; Leeper, R.; Grim, G.; Kline, J.; Peterson, R.; Berzak Hopkins, L.; Hamza, A.; Ho, D.; Jones, O.; Lepape, S.; MacKinnon, A.; Meezan, N.; Robey, H.

    2014-10-01

    DT Liquid Layer ICF capsules allow for flexibility in hot spot convergence ratio via the adjustment of the initial cryogenic capsule temperature and, hence, DT vapor density. High Density Carbon (HDC) is a leading candidate as an ablator material for ICF capsules, and a technique has been developed for lining the inner surface of a HDC shell with an ultra-low-density hydrocarbon foam that will survive wetting with liquid hydrogen. In this presentation, we propose a series of NIF experiments using liquid DT layer (wetted foam) HDC capsules to test the hypothesis that our predictive capability of hot spot formation is robust for a relatively low convergence ratio hot spot, but will become more difficult as vapor pressure is reduced and hot spot convergence ratio is increased. The proposed liquid DT layer HDC capsule ``sub-scale'' experiments utilize near-vacuum hohlraums with NIF laser pulse energies of about 1 MJ, but larger scale experiments are also considered. This work was performed under the auspices of the U. S. DOE by LANL under Contract DE-AC52-06NA25396, and by LLNL under Contract DE-AC52-07NA27344.

  9. Short-lived and discontinuous intraplate volcanism in the South Pacific: Hot spots or extensional volcanism?

    NASA Astrophysics Data System (ADS)

    Koppers, Anthony A. P.; Staudigel, Hubert; Pringle, Malcolm S.; Wijbrans, Jan R.

    2003-10-01

    South Pacific intraplate volcanoes have been active since the Early Cretaceous. Their HIMU-EMI-EMII mantle sources can be traced back into the West Pacific Seamount Province (WPSP) using plate tectonic reconstructions, implying that these distinctive components are enduring features within the Earth's mantle for, at least, the last 120 Myr. These correlations are eminent on the scale of the WPSP and the South Pacific Thermal and Isotopic Anomaly (SOPITA), but the evolution of single hot spots emerges notably more complicated. Hot spots in the WPSP and SOPITA mantle regions typically display intermittent volcanic activity, longevities shorter than 40 Myr, superposition of hot spot volcanism, and motion relative to other hot spots. In this review, we use 40Ar/39Ar seamount ages and Sr-Nd-Pb isotopic signatures to map out Cretaceous volcanism in the WPSP and to characterize its evolution with respect to the currently active hot spots in the SOPITA region. Our plate tectonic reconstructions indicate cessation of volcanism during the Cretaceous for the Typhoon and Japanese hot spots; whereas the currently active Samoan, Society, Pitcairn and Marquesas hot spots lack long-lived counterparts in the WPSP. These hot spots may have become active during the last 20 Myr only. The other WPSP seamount trails can be only "indirectly" reconciled with hot spots in the SOPITA region. Complex age distributions in the Magellan, Anewetak, Ralik and Ratak seamount trails would necessitate the superposition of multiple volcanic trails generated by the Macdonald, Rurutu and Rarotonga hot spots during the Cretaceous; whereas HIMU-type seamounts in the Southern Wake seamount trail would require 350-500 km of hot spot motion over the last 100 Myr following its origination along the Mangaia-Rurutu "hotline" in the Cook-Austral Islands. These observations, however, violate all assumptions of the classical Wilson-Morgan hot spot hypothesis, indicating that long-lived, deep and fixed mantle

  10. SU-E-T-393: Investigation of Hot Spots in Tomotherapy 3D Conformal Breast Plan

    SciTech Connect

    Chen, Q; Siebers, J; Khandelwal, S

    2014-06-01

    Purpose: The purpose of this study is to determine the root-cause of hotspots inherent to Tomotherapy static beam 3D conformal radiotherapy (3DCRT) for breast treatment. ASTRO (ref here) recommends that IMRT be avoided for breast treatments. Despite Tomotherapy's inherent IMRT-like optimization and delivery, our experience at a Tomotherapy-only site has been that Tomotherapy 3DCRT fail to produce a clinically acceptable plan for 79% of our breast patients. Hot-spots have been one of the major obstacles. Methods: Eight lumpectomy patients were planned according to RTOG-1005 specification. Two or four tangential beams were used for 3DCRT breast planning. To spare the contralateral breast and ipsilateral lung, part of the PTV was not covered by the primary beam, yielding adjacent hot-spots. We hypothesize that the planning system creates hotspots adjacent to the cold spots to yield scatter radiation dose compensation in the blocked region. Various phantom and patient setup were used to test the hypothesis. Results: Hot spots outside of PTV in the range of 135% - 174% were observed for patient plan. It is confirmed that the PTV partial block causes the adjacent hot spot. The root cause is the optimizer quadratic objective function over- weighs improving the cold spot. The IMRT flexibility offered by Tomotherapy is counter-productive in static-beam 3DCRT breast treatment. For phantom case, as the Modulation-Factor increases from 1.1 to 5, the hot spot increases from 110% to 300%. Limiting the 3DCRT intensity modulation is shown to produce clinically acceptable plan. Conclusion: Most of the hot spots in Tomotherapy 3DCRT breast plan originate from the planning-system optimizer attempting to cover PTV cold spots rather than from the beam energy. Altering the objective function could improve clinical acceptability of static beam Tomotherapy 3DCRT.

  11. Exotic plant species invade hot spots of native plant diversity

    USGS Publications Warehouse

    Stohlgren, T.J.; Binkley, D.; Chong, G.W.; Kalkhan, M.A.; Schell, L.D.; Bull, K.A.; Otsuki, Y.; Newman, G.; Bashkin, M.; Yowhan, S.

    1999-01-01

    Some theories and experimental studies suggest that areas of low plant species richness may be invaded more easily than areas of high plant species richness. We gathered nested-scale vegetation data on plant species richness, foliar cover, and frequency from 200 1-m2 subplots (20 1000-m2 modified-Whittaker plots) in the Colorado Rockies (USA), and 160 1-m2 subplots (16 1000-m2 plots) in the Central Grasslands in Colorado, Wyoming, South Dakota, and Minnesota (USA) to test the generality of this paradigm. At the 1-m2 scale, the paradigm was supported in four prairie types in the Central Grasslands, where exotic species richness declined with increasing plant species richness and cover. At the 1-m2 scale, five forest and meadow vegetation types in the Colorado Rockies contradicted the paradigm; exotic species richness increased with native-plant species richness and foliar cover. At the 1000-m2 plot scale (among vegetation types), 83% of the variance in exotic species richness in the Central Grasslands was explained by the total percentage of nitrogen in the soil and the cover of native plant species. In the Colorado Rockies, 69% of the variance in exotic species richness in 1000-m2 plots was explained by the number of native plant species and the total percentage of soil carbon. At landscape and biome scales, exotic species primarily invaded areas of high species richness in the four Central Grasslands sites and in the five Colorado Rockies vegetation types. For the nine vegetation types in both biomes, exotic species cover was positively correlated with mean foliar cover, mean soil percentage N, and the total number of exotic species. These patterns of invasibility depend on spatial scale, biome and vegetation type, spatial autocorrelation effects, availability of resources, and species-specific responses to grazing and other disturbances. We conclude that: (1) sites high in herbaceous foliar cover and soil fertility, and hot spots of plant diversity (and

  12. Sensitivity of inertial confinement fusion hot spot properties to the deuterium-tritium fuel adiabat

    SciTech Connect

    Melvin, J.; Lim, H.; Rana, V.; Glimm, J.; Cheng, B.; Sharp, D. H.; Wilson, D. C.

    2015-02-15

    We determine the dependence of key Inertial Confinement Fusion (ICF) hot spot simulation properties on the deuterium-tritium fuel adiabat, here modified by addition of energy to the cold shell. Variation of this parameter reduces the simulation to experiment discrepancy in some, but not all, experimentally inferred quantities. Using simulations with radiation drives tuned to match experimental shots N120321 and N120405 from the National Ignition Campaign (NIC), we carry out sets of simulations with varying amounts of added entropy and examine the sensitivities of important experimental quantities. Neutron yields, burn widths, hot spot densities, and pressures follow a trend approaching their experimentally inferred quantities. Ion temperatures and areal densities are sensitive to the adiabat changes, but do not necessarily converge to their experimental quantities with the added entropy. This suggests that a modification to the simulation adiabat is one of, but not the only explanation of the observed simulation to experiment discrepancies. In addition, we use a theoretical model to predict 3D mix and observe a slight trend toward less mixing as the entropy is enhanced. Instantaneous quantities are assessed at the time of maximum neutron production, determined dynamically within each simulation. These trends contribute to ICF science, as an effort to understand the NIC simulation to experiment discrepancy, and in their relation to the high foot experiments, which features a higher adiabat in the experimental design and an improved neutron yield in the experimental results.

  13. Cooling off health security hot spots: getting on top of it down under.

    PubMed

    Murray, Kris A; Skerratt, Lee F; Speare, Rick; Ritchie, Scott; Smout, Felicity; Hedlefs, Robert; Lee, Jonathan

    2012-11-01

    Australia is free of many diseases, pests and weeds found elsewhere in the world due to its geographical isolation and relatively good health security practices. However, its health security is under increasing pressure due to a number of ecological, climatic, demographic and behavioural changes occurring globally. North Queensland is a high risk area (a health security hot spot) for Australia, due in part to its connection to neighbouring countries via the Torres Strait and the Indo-Papuan conduit, its high diversity of wildlife reservoirs and its environmental characteristics. Major outbreaks of exotic diseases, pests and weeds in Australia can cost in excess of $1 billion; however, most expenditure on health security is reactive apart from preventive measures undertaken for a few high profile diseases, pests and weeds. Large gains in health security could therefore be made by spending more on pre-emptive approaches to reduce the risk of outbreaks, invasion/spread and establishment, despite these gains being difficult to quantify. Although biosecurity threats may initially have regional impacts (e.g. Hendra virus), a break down in security in health security hot spots can have national and international consequences, as has been seen recently in other regions with the emergence of SARS and pandemic avian influenza. Novel approaches should be driven by building research and management capacity, particularly in the regions where threats arise, a model that is applicable both in Australia and in other regions of the world that value and therefore aim to improve their strategies for maintaining health security.

  14. Sensitivity of inertial confinement fusion hot spot properties to the deuterium-tritium fuel adiabat

    NASA Astrophysics Data System (ADS)

    Melvin, J.; Lim, H.; Rana, V.; Cheng, B.; Glimm, J.; Sharp, D. H.; Wilson, D. C.

    2015-02-01

    We determine the dependence of key Inertial Confinement Fusion (ICF) hot spot simulation properties on the deuterium-tritium fuel adiabat, here modified by addition of energy to the cold shell. Variation of this parameter reduces the simulation to experiment discrepancy in some, but not all, experimentally inferred quantities. Using simulations with radiation drives tuned to match experimental shots N120321 and N120405 from the National Ignition Campaign (NIC), we carry out sets of simulations with varying amounts of added entropy and examine the sensitivities of important experimental quantities. Neutron yields, burn widths, hot spot densities, and pressures follow a trend approaching their experimentally inferred quantities. Ion temperatures and areal densities are sensitive to the adiabat changes, but do not necessarily converge to their experimental quantities with the added entropy. This suggests that a modification to the simulation adiabat is one of, but not the only explanation of the observed simulation to experiment discrepancies. In addition, we use a theoretical model to predict 3D mix and observe a slight trend toward less mixing as the entropy is enhanced. Instantaneous quantities are assessed at the time of maximum neutron production, determined dynamically within each simulation. These trends contribute to ICF science, as an effort to understand the NIC simulation to experiment discrepancy, and in their relation to the high foot experiments, which features a higher adiabat in the experimental design and an improved neutron yield in the experimental results.

  15. Characterization of plasma and laser conditions for single hot spot interaction experiments

    SciTech Connect

    Montgomery, D.S.; Johnson, R.P.; Cobble, J.A.; Fernandez, J.C.; Lindman, E.L.; Rose, H.A.; Estabrook, K.G.

    1998-11-01

    The LANL TRIDENT laser system is being used for fundamental experiments which study the interaction of self-focusing, stimulated Raman scattering (SRS) and stimulated Brillouin scattering (SBS) in a single (diffraction limited) laser hot spot in order to better understand the coupling between these plasma instabilities. The diffraction limited beam mimics a single hot spot found in speckle distributions that are typical of random or kinoform phase plate (RPP or KPP) smoothing. A long scale length, hot plasma ({approximately} 1 mm, {approximately} 0.5 keV) is created by a separate heater beam, and the single hot spot beam is used to drive parametric instabilities. The focal plane distribution and wavefront of the single hot spot beam are characterized, and the intensity of the single hot spot can be varied between 10{sup 14}--10{sup 16} W/cm{sup 2}. The plasma density, temperature, and flow profiles are measured using gated imaging spectroscopy of collective Thomson scattering. Results of the laser and plasma characterization, and initial results of backscattered SRS, SBS, and beam steering in a flowing plasma are presented.

  16. Hot spot(s) of the lung in technetium-99m albumin colloid liver-spleen scintigraphy: case report

    SciTech Connect

    Shih, W.J.; Brandenburg, S.; Coupal, J.J.; Sullivan, J.D.; Beeler, J.A.; Magoun, S.; Ryo, U.Y.

    1988-06-01

    The authors replaced /sup 99m/Tc albumin colloid for /sup 99m/Tc sulfur colloid as a radiopharmaceutical for liver-spleen imaging and found two instances of hot spot(s) in the lung. The preparation procedure of albumin colloid is easier and more convenient as compared to that of sulfur colloid. Whereas replacement of /sup 99m/Tc sulfur colloid by /sup 99m/Tc albumin colloid is inevitable, it should be emphasized that one should avoid blood withdrawal in the syringe containing albumin colloid to prevent formation of clot(s) during the venous puncture for /sup 99m/Tc albumin colloid.

  17. Joule heating hot spot at high latitudes in the afternoon sector

    NASA Astrophysics Data System (ADS)

    Cai, L.; Aikio, A. T.; Milan, S. E.

    2016-07-01

    The afternoon Joule heating hot spot has been studied statistically by using the EISCAT Svalbard Radar (ESR) measurements at 75.4° Corrected Geomagnetic latitude (CGMLAT) and the OMNI solar wind data base. For a small subset of events, the Active Magnetosphere and Planetary Electrodynamics Response Experiment (AMPERE) field-aligned current distributions have been available. The main results are as follows. Afternoon Joule heating hot spots are associated with high values of ionospheric electric fields and slightly enhanced Pedersen conductances. The Joule heating hot spot values are larger in summer than in winter, which can be explained by the higher Pedersen conductances during summer than winter. The afternoon Joule heating hot spots are located close to the reversals of the large-scale field-aligned current systems. The most common location is close to the Region 1/Region 2 boundary and those events are associated with sunward convecting F region plasma. In a few cases, the hot spots take place close to the Region 1/Region 0 boundary and then the ionospheric plasma is convecting antisunward. The hot spots may occur both during slow (<450 km/s) and high (>450 km/s) speed solar wind conditions. During slow-speed solar wind events, the dominant interplanetary magnetic field (IMF) direction is southward, which is the general requirement for the low-latitude magnetic merging at the dayside magnetopause. During high-speed solar wind, also northward IMF conditions appear, but those are associated with large values of the IMF |By| component, making again the dayside magnetopause merging possible. Finally, the measured afternoon hot spot Joule heating rates are not a linear function of the solar wind energy coupling function.

  18. Alternative hot spot formation techniques using liquid deuterium-tritium layer inertial confinement fusion capsules

    SciTech Connect

    Olson, R. E.; Leeper, R. J.

    2013-09-15

    The baseline DT ice layer inertial confinement fusion (ICF) ignition capsule design requires a hot spot convergence ratio of ∼34 with a hot spot that is formed from DT mass originally residing in a very thin layer at the inner DT ice surface. In the present paper, we propose alternative ICF capsule designs in which the hot spot is formed mostly or entirely from mass originating within a spherical volume of DT vapor. Simulations of the implosion and hot spot formation in two DT liquid layer ICF capsule concepts—the DT wetted hydrocarbon (CH) foam concept and the “fast formed liquid” (FFL) concept—are described and compared to simulations of standard DT ice layer capsules. 1D simulations are used to compare the drive requirements, the optimal shock timing, the radial dependence of hot spot specific energy gain, and the hot spot convergence ratio in low vapor pressure (DT ice) and high vapor pressure (DT liquid) capsules. 2D simulations are used to compare the relative sensitivities to low-mode x-ray flux asymmetries in the DT ice and DT liquid capsules. It is found that the overall thermonuclear yields predicted for DT liquid layer capsules are less than yields predicted for DT ice layer capsules in simulations using comparable capsule size and absorbed energy. However, the wetted foam and FFL designs allow for flexibility in hot spot convergence ratio through the adjustment of the initial cryogenic capsule temperature and, hence, DT vapor density, with a potentially improved robustness to low-mode x-ray flux asymmetry.

  19. Alternative hot spot formation techniques using liquid deuterium-tritium layer inertial confinement fusion capsules

    SciTech Connect

    Olson, R. E.; Leeper, R. J.

    2013-09-27

    The baseline DT ice layer inertial confinement fusion (ICF) ignition capsule design requires a hot spot convergence ratio of ~34 with a hot spot that is formed from DT mass originally residing in a very thin layer at the inner DT ice surface. In the present paper, we propose alternative ICF capsule designs in which the hot spot is formed mostly or entirely from mass originating within a spherical volume of DT vapor. Simulations of the implosion and hot spot formation in two DT liquid layer ICF capsule concepts—the DT wetted hydrocarbon (CH) foam concept and the “fast formed liquid” (FFL) concept—are described and compared to simulations of standard DT ice layer capsules. 1D simulations are used to compare the drive requirements, the optimal shock timing, the radial dependence of hot spot specific energy gain, and the hot spot convergence ratio in low vapor pressure (DT ice) and high vapor pressure (DT liquid) capsules. 2D simulations are used to compare the relative sensitivities to low-mode x-ray flux asymmetries in the DT ice and DT liquid capsules. It is found that the overall thermonuclear yields predicted for DT liquid layer capsules are less than yields predicted for DT ice layer capsules in simulations using comparable capsule size and absorbed energy. However, the wetted foam and FFL designs allow for flexibility in hot spot convergence ratio through the adjustment of the initial cryogenic capsule temperature and, hence, DT vapor density, with a potentially improved robustness to low-mode x-ray flux asymmetry.

  20. Robust Identification of Binding Hot Spots Using Continuum Electrostatics: Application to Hen Egg-White Lysozyme

    PubMed Central

    2011-01-01

    Binding hot spots, protein regions with high binding affinity, can be identified by using X-ray crystallography or NMR spectroscopy to screen libraries of small organic molecules that tend to cluster at such hot spots. FTMap, a direct computational analogue of the experimental screening approaches, uses 16 different probe molecules for global sampling of the surface of a target protein on a dense grid and evaluates the energy of interaction using an empirical energy function that includes a continuum electrostatic term. Energy evaluation is based on the fast Fourier transform correlation approach, which allows for the sampling of billions of probe positions. The grid sampling is followed by off-grid minimization that uses a more detailed energy expression with a continuum electrostatics term. FTMap identifies the hot spots as consensus clusters formed by overlapping clusters of several probes. The hot spots are ranked on the basis of the number of probe clusters, which predicts their binding propensity. We applied FTMap to nine structures of hen egg-white lysozyme (HEWL), whose hot spots have been extensively studied by both experimental and computational methods. FTMap found the primary hot spot in site C of all nine structures, in spite of conformational differences. In addition, secondary hot spots in sites B and D that are known to be important for the binding of polysaccharide substrates were found. The predicted probe–protein interactions agree well with those seen in the complexes of HEWL with various ligands and also agree with an NMR-based study of HEWL in aqueous solutions of eight organic solvents. We argue that FTMap provides more complete information on the HEWL binding site than previous computational methods and yields fewer false-positive binding locations than the X-ray structures of HEWL from crystals soaked in organic solvents. PMID:22092261

  1. What controls the distribution and tectono-magmatic features of oceanic hot spot volcanoes

    NASA Astrophysics Data System (ADS)

    Acocella, Valerio; Vezzoli, Luigina

    2016-04-01

    Hot spot oceanic volcanoes worldwide show significant deviations from the classic Hawaiian reference model; these mainly concern the distribution of edifices and overall tectono-magmatic features, as the development of the volcanic rift zones and extent of flank instability. Here we try to explain these deviations investigating and comparing the best-known hot spot oceanic volcanoes. At a general scale, these volcanoes show an age-distance progression ranging from focused to scattered. This is here explained as due to several independent factors, as the thermal or mechanical weakening of the plate (due to the lithosphere thickness or regional structures, respectively), or the plume structure. At a more detailed scale, hot spot volcanoes show recurrent features, including mafic shield edifices with summit caldera and volcanic rift zones, often at the head of an unstable flank. However, despite this recurrence, a widespread tectono-magmatic variability is often found. Here we show how this variability depends upon the magma supply and age of the oceanic crust (influencing the thickness of the overlying pelagic sediments). Well-developed rift zones and larger collapses are found on hot spot volcanoes with higher supply rate and older crust, as Hawaii and Canary Islands. Poorly-developed rift zones and limited collapses occur on hot spot volcanoes with lower supply rate and younger crust, as Easter Island and Ascension. Transitional features are observed at hot spots with intermediate productivity (Cape Verde, Reunion, Society Islands and, to a minor extent, the Azores), whereas the scarcity or absence of pelagic sediments may explain the lack of collapses and developed rift zones in the productive Galapagos hot spot.

  2. Uranium Bioreduction Rates across Scales: Biogeochemical Hot Moments and Hot Spots during a Biostimulation Experiment at Rifle, Colorado

    SciTech Connect

    Bao, Chen; Wu, Hongfei; Li, Li; Newcomer, Darrell R.; Long, Philip E.; Williams, Kenneth H.

    2014-09-02

    We aim to understand the scale-dependent evolution of uranium bioreduction during a field experiment at a former uranium mill site near Rifle, Colorado. Acetate was injected to stimulate Fe-reducing bacteria (FeRB) and to immobilize aqueous U(VI) to insoluble U(IV). Bicarbonate was coinjected in half of the domain to mobilize sorbed U(VI). We used reactive transport modeling to integrate hydraulic and geochemical data and to quantify rates at the grid block (0.25 m) and experimental field scale (tens of meters). Although local rates varied by orders of magnitude in conjunction with biostimulation fronts propagating downstream, field-scale rates were dominated by those orders of magnitude higher rates at a few selected hot spots where Fe(III), U(VI), and FeRB were at their maxima in the vicinity of the injection wells. At particular locations, the hot moments with maximum rates negatively corresponded to their distance from the injection wells. Although bicarbonate injection enhanced local rates near the injection wells by a maximum of 39.4%, its effect at the field scale was limited to a maximum of 10.0%. We propose a rate-versus-measurement-length relationship (log R' = -0.63

  3. Hydrologic indicators of hot spots and hot moments of mercury methylation along river corridors

    NASA Astrophysics Data System (ADS)

    Singer, Michael; Harrison, Lee; Donovan, Patrick; Blum, Joel; Marvin-DiPasquale, Mark

    2016-04-01

    The biogeochemical cycling of metals and other contaminants river-floodplain corridors is controlled by microbial activity is often affected by dynamic redox conditions. Riverine flooding thus has the potential to affect speciation of redox-sensitive metals such as mercury (Hg). Therefore, flow history over a period of decades potentially holds information on past production of bioavailable Hg. We investigate this process within a Northern California river system that has a legacy of industrial-scale 19th century hydraulic gold mining. In the first known application of this methodology, we combine hydraulic modeling, measurements of Hg species in sediment and biota, and first-order calculations to assess the role of river floodplains in producing monomethylmercury (MMHg), which accumulates in local and migratory biota. We identify areas that represent 'hot spots' (frequently inundated areas of floodplains) and 'hot moments' (floodplain areas inundated for consecutive long periods). We show that the probability of MMHg production in each sector of the river system is dependent on the spatial patterns of overbank flow and drainage, which affect its long-term redox history. MMHg bioaccumulation within the aquatic food web may pose a major risk to humans and waterfowl that eat migratory salmonids, which are being encouraged to come up these rivers to spawn, and there appears to be no end to MMHg production under a regime of increasingly common large floods with extended duration. These findings identify river floodplains as periodic, temporary, yet important, loci of biogeochemical transformation in which contaminants may undergo change during limited periods of the historical hydrologic record. We suggest that inundation is the primary driver of MMHg production in river corridors and that the entire flow history must be analyzed in terms of magnitude and frequency of inundation in order to accurately assess biogeochemical risks, rather than merely highlighting the

  4. Analysis of recombinational hot spots associated with the p haplotype fo the mouse MHC

    SciTech Connect

    Heine, D.; Khambata, S.; Wydner, K.S.; Passmore, H.C.

    1994-09-01

    Most of the recombination events detected within the major histocompatibility complex (MHC) of the mouse fall into areas of limited physical size that have been designated recombinational hot spots. One of these hot spots, associated with the Ea gene, appears to be active only in the presence of the p haplotype of the MHC. To study the regulation of the Ea recombinational hot spot and its haplotype specificity, a high-resolution comparative map fo the MHC and adjacent regions was completed in four different backcrosses carrying the p haplotype. This mapping study utilized a total of 29 PCR-based molecular markers, including 7 newly developed markers spanning the region between Pim1 and D17Mit11 on Chromosome 17. The analysis of a total of 1093 backcross animals: (1) revealed that the presence of the p haplotype of the MHC is not sufficient to induce recombination at the Ea hot spot in a dominant manner, and (2) resulted in the definition of a new intra-MHC recombinational hot spot between the Tnfb and the H2-D genes.

  5. Functional Roles of Acetylated Histone Marks at Mouse Meiotic Recombination Hot Spots.

    PubMed

    Getun, Irina V; Wu, Zhen; Fallahi, Mohammad; Ouizem, Souad; Liu, Qin; Li, Weimin; Costi, Roberta; Roush, William R; Cleveland, John L; Bois, Philippe R J

    2017-02-01

    Meiotic recombination initiates following the formation of DNA double-strand breaks (DSBs) by the Spo11 endonuclease early in prophase I, at discrete regions in the genome coined "hot spots." In mammals, meiotic DSB site selection is directed in part by sequence-specific binding of PRDM9, a polymorphic histone H3 (H3K4Me3) methyltransferase. However, other chromatin features needed for meiotic hot spot specification are largely unknown. Here we show that the recombinogenic cores of active hot spots in mice harbor several histone H3 and H4 acetylation and methylation marks that are typical of open, active chromatin. Further, deposition of these open chromatin-associated histone marks is dynamic and is manifest at spermatogonia and/or pre-leptotene-stage cells, which facilitates PRDM9 binding and access for Spo11 to direct the formation of DSBs, which are initiated at the leptotene stage. Importantly, manipulating histone acetylase and deacetylase activities established that histone acetylation marks are necessary for both hot spot activity and crossover resolution. We conclude that there are functional roles for histone acetylation marks at mammalian meiotic recombination hot spots.

  6. NASA Spots "Hot Towers" in Intensifying Tropical Storm Frank

    NASA Video Gallery

    "Hot towers" (orange) were visible in this animated flyby of data from the Global Precipitation Measurement mission or GPM satellite. On July 21, the GPM Core satellite measured rainfall rates of o...

  7. Allele-dependent recombination frequency: homology requirement in meiotic recombination at the hot spot in the mouse major histocompatibility complex.

    PubMed

    Yoshino, M; Sagai, T; Lindahl, K F; Toyoda, Y; Moriwaki, K; Shiroishi, T

    1995-05-20

    Meiotic recombination break joints in the mouse major histocompatibility complex (MHC) are clustered within short segments known as hot spots. We systematically investigated the requirement for sequence homology between two chromosomes for recombination activity at the hot spot next to the Lmp2 gene. The results indicated that a high rate of recombination required a high degree of similarity of overall genome structure at the hot spot. In particular, the same copy number of repetitive sequences within the hot spot was essential for a high frequency of recombination, suggesting that recombination in mouse meiosis is more sensitive to heterozygous deletion or insertion of DNA than to mismatches of single-base substitutions.

  8. Wavelength modulated SERS hot spot distribution in 1D nanostructures on metal film

    NASA Astrophysics Data System (ADS)

    Wang, Lili; Zeng, Xiping; Liu, Ting; Zhang, Xuemei; Wei, Hua; Huang, Yingzhou; Liu, Anping; Wang, Shuxia; Wen, Weijia

    2016-10-01

    Surface plasmons confining strong electromagnetic fields near metal surfaces, well-known as hot spots, provide an extremely efficient platform for surface-enhanced Raman scattering (SERS). In this work, SERS spectra of probing molecules in a silver particle-wire 1D nanostructure on a thin gold film are investigated. The Raman features of SERS spectra collected at the particle-wire joints exhibit an obvious wavelength dependence phenomenon. This result is confirmed electromagnetic field simulation, revealing that hot spot distribution is sensitively influenced by the wavelength of incident light at the joints. Further studies indicate this wavelength dependence of hot spot distribution is immune to influence from the geometric shape of the particle or the angle between wire and particle, which improves fabrication tolerance. This technology may have promising applications in surface plasmon related fields, such as ultrasensors, solar energy and selective surface catalysis.

  9. How To Light Special Hot Spots in Multiparticle-Film Configurations.

    PubMed

    Chen, Shu; Meng, Ling-Yan; Shan, Hang-Yong; Li, Jian-Feng; Qian, Lihua; Williams, Christopher T; Yang, Zhi-Lin; Tian, Zhong-Qun

    2016-01-26

    The precise control over the locations of hot spots in a nanostructured ensemble is of great importance in plasmon-enhanced spectroscopy, chemical sensing, and super-resolution optical imaging. However, for multiparticle configurations over metal films that involve localized and propagating surface plasmon modes, the locations of hot spots are difficult to predict due to complex plasmon competition and synergistic effects. In this work, theoretical simulations based on multiparticle-film configurations predict that the locations of hot spots can be efficiently controlled in the particle-particle gaps, the particle-film junctions, or in both, by suppressing or promoting specific plasmonic coupling effects in specific wavelength ranges. These findings offer an avenue to obtain strong Raman signals from molecules situated on single crystal surfaces and simultaneously avoid signal interference from particle-particle gaps.

  10. Multiphysics Simulations of Hot-Spot Initiation in Shocked Insensitive High-Explosive

    NASA Astrophysics Data System (ADS)

    Najjar, Fady; Howard, W. M.; Fried, L. E.

    2010-11-01

    Solid plastic-bonded high-explosive materials consist of crystals with micron-sized pores embedded. Under mechanical or thermal insults, these voids increase the ease of shock initiation by generating high-temperature regions during their collapse that might lead to ignition. Understanding the mechanisms of hot-spot initiation has significant research interest due to safety, reliability and development of new insensitive munitions. Multi-dimensional high-resolution meso-scale simulations are performed using the multiphysics software, ALE3D, to understand the hot-spot initiation. The Cheetah code is coupled to ALE3D, creating multi-dimensional sparse tables for the HE properties. The reaction rates were obtained from MD Quantum computations. Our current predictions showcase several interesting features regarding hot spot dynamics including the formation of a "secondary" jet. We will discuss the results obtained with hydro-thermo-chemical processes leading to ignition growth for various pore sizes and different shock pressures.

  11. Testing a class of non-Kerr metrics with hot spots orbiting SgrA*

    SciTech Connect

    Liu, Dan; Li, Zilong; Bambi, Cosimo E-mail: zilongli@fudan.edu.cn

    2015-01-01

    SgrA*, the supermassive black hole candidate at the Galactic Center, exhibits flares in the X-ray, NIR, and sub-mm bands that may be interpreted within a hot spot model. Light curves and images of hot spots orbiting a black hole are affected by a number of special and general relativistic effects, and they can be potentially used to check whether the object is a Kerr black hole of general relativity. However, in a previous study we have shown that the relativistic features are usually subdominant with respect to the background noise and the model-dependent properties of the hot spot, and eventually it is at most possible to estimate the frequency of the innermost stable circular orbit. In this case, tests of the Kerr metric are only possible in combination with other measurements. In the present work, we consider a class of non-Kerr spacetimes in which the hot spot orbit may be outside the equatorial plane. These metrics are difficult to constrain from the study of accretion disks and indeed current X-ray observations of stellar-mass and supermassive black hole candidates cannot put interesting bounds. Here we show that near future observations of SgrA* may do it. If the hot spot is sufficiently close to the massive object, the image affected by Doppler blueshift is brighter than the other one and this provides a specific observational signature in the hot spot's centroid track. We conclude that accurate astrometric observations of SgrA* with an instrument like GRAVITY should be able to test this class of metrics, except in the more unlikely case of a small viewing angle.

  12. Comparison of Hot Spot Formation in DT ice layer and DT liquid layer ICF Capsules

    NASA Astrophysics Data System (ADS)

    Olson, R. E.; Leeper, R. J.

    2013-10-01

    Simulations of the implosion and hot spot formation in two DT liquid layer ICF capsule concepts - the DT wetted CH foam concept and the ``fast formed liquid'' (FFL) concept - will be described and compared to simulations of standard DT ice layer capsules. The wetted foam and FFL designs allow for flexibility in hot spot convergence ratio through the adjustment of the initial cryogenic capsule temperature and, hence, DT vapor density. 1D simulations are used to compare the drive requirements, the optimal shock timing, the radial dependence of hot spot specific energy gain, and the hot spot convergence ratio in low (DT ice) and high (DT liquid) vapor pressure capsules. 2D simulations are used to compare the relative sensitivities to low-mode x-ray flux asymmetries in the DT ice and DT liquid capsules. It is found that the overall thermonuclear yields predicted for DT liquid layer capsules will be less than yields predicted for DT ice layer capsules in simulations using comparable capsule size and absorbed energy. However, the relative simplicity of the hot spot formation technique might lead to a more robust ignition experiment, a reduction in sensitivity to low-mode x-ray flux asymmetry, and an improvement in the computational prediction of hot spot behavior. This work was performed under the auspices of the U. S. DOE by LANL under contract DE-AC52-06NA25396. Sandia is a multiprogram laboratory operated by the Sandia Corporation, a Lockheed-Martin Company, for the U.S. DOE under contract DE-AC04-94AL85000.

  13. Small Molecules Engage Hot Spots through Cooperative Binding To Inhibit a Tight Protein-Protein Interaction.

    PubMed

    Liu, Degang; Xu, David; Liu, Min; Knabe, William Eric; Yuan, Cai; Zhou, Donghui; Huang, Mingdong; Meroueh, Samy O

    2017-03-28

    Protein-protein interactions drive every aspect of cell signaling, yet only a few small-molecule inhibitors of these interactions exist. Despite our ability to identify critical residues known as hot spots, little is known about how to effectively engage them to disrupt protein-protein interactions. Here, we take advantage of the ease of preparation and stability of pyrrolinone 1, a small-molecule inhibitor of the tight interaction between the urokinase receptor (uPAR) and its binding partner, the urokinase-type plasminogen activator uPA, to synthesize more than 40 derivatives and explore their effect on the protein-protein interaction. We report the crystal structure of uPAR bound to previously discovered pyrazole 3 and to pyrrolinone 12. While both 3 and 12 bind to uPAR and compete with a fluorescently labeled peptide probe, only 12 and its derivatives inhibit the full uPAR·uPA interaction. Compounds 3 and 12 mimic and engage different hot-spot residues on uPA and uPAR, respectively. Interestingly, 12 is involved in a π-cation interaction with Arg-53, which is not considered a hot spot. Explicit-solvent molecular dynamics simulations reveal that 3 and 12 exhibit dramatically different correlations of motion with residues on uPAR. Free energy calculations for the wild-type and mutant uPAR bound to uPA or 12 show that Arg-53 interacts with uPA or with 12 in a highly cooperative manner, thereby altering the contributions of hot spots to uPAR binding. The direct engagement of peripheral residues not considered hot spots through π-cation or salt-bridge interactions could provide new opportunities for enhanced small-molecule engagement of hot spots to disrupt challenging protein-protein interactions.

  14. Powerful Radio Galaxies with Simbol-X: Lobes and Hot Spots

    SciTech Connect

    Migliori, G.

    2009-05-11

    We present here the first Simbol-X simulations of the extended components, lobes and hot spots, of the radio galaxies. We use the paradigmatic case of Pictor A to test the capabilities of Simbol-X in this field of studies. Simulations demonstrate that Simbol-X will be able not only to perform spatially resolved studies on the lobes of radio galaxies below 10 keV but also to observe, for the first time, hard X-ray emission from the hot spots. These extremely promising results show the considerable potentiality of Simbol-X in studying interaction phenomena between relativistic plasma and surrounding environment.

  15. Powerful Radio Galaxies with Simbol-X: Lobes and Hot Spots

    NASA Astrophysics Data System (ADS)

    Migliori, G.; Grandi, P.; Angelini, L.; Raimondi, L.; Torresi, E.; Palumbo, G. G. C.

    2009-05-01

    We present here the first Simbol-X simulations of the extended components, lobes and hot spots, of the radio galaxies. We use the paradigmatic case of Pictor A to test the capabilities of Simbol-X in this field of studies. Simulations demonstrate that Simbol-X will be able not only to perform spatially resolved studies on the lobes of radio galaxies below 10 keV but also to observe, for the first time, hard X-ray emission from the hot spots. These extremely promising results show the considerable potentiality of Simbol-X in studying interaction phenomena between relativistic plasma and surrounding environment.

  16. Investigating La Réunion Hot Spot From Crust to Core

    NASA Astrophysics Data System (ADS)

    Barruol, Guilhem; Sigloch, Karin

    2013-06-01

    Whether volcanic intraplate hot spots are underlain by deep mantle plumes continues to be debated 40 years after the hypothesis was proposed by Morgan [1972]. Arrivals of buoyant plume heads may have been among the most disruptive agents in Earth's history, initiating continental breakup, altering global climate, and triggering mass extinctions. Further, with the temporary shutdown of European air traffic in 2010 caused by the eruption of Eyjafjallajökull, a geologically routine eruption in the tail end of the presumed Iceland plume, the world witnessed an intrusion of hot spot activity into modern-day life.

  17. Excess ellipticity of hot and cold spots in the WMAP data?

    SciTech Connect

    Berntsen, Eirik; Hansen, Frode K. E-mail: frodekh@astro.uio.no

    2013-12-10

    We investigate claims of excess ellipticity of hot and cold spots in the Wilkinson Microwave Anisotropy Probe (WMAP) data. Using the cosmic microwave background (CMB) data from 7 yr of observations by the WMAP satellite, we find, contrary to previous claims of a 10σ detection of excess ellipticity in the 3 yr data, that the ellipticity of hot and cold spots is perfectly consistent with simulated CMB maps based on the concordance cosmology. We further test for excess obliquity and excess skewness/kurtosis of ellipticity and obliquity and find the WMAP7 data consistent with Gaussian simulated maps.

  18. Division of aperture to reduce the focus spot size

    NASA Astrophysics Data System (ADS)

    Li, Liangyu; Li, Changchun; Yang, Huajun; Li, Yinzhu; Dai, Yaping; Xie, Hu; Wang, Gongyu; Zhu, Jianqiang

    2000-10-01

    In the investigation of Inertial Confinement Fusion (ICF), the high power laser beam must be focused on the target (focus plane) given. In the ICF indirect drivers, the target fixed in a cavity is cylinderal, there are the Deuterium and the Tritium in the target, the experiment result relatives with the temperature radiated in the cavity, and the temperature relatives with the laser energy power incided. Thus, it is key that there must be enough of energy incided, and the energy runs out barely. So, to increase the laser energy incided, the focus spot should be very small. Base on the design of focus optical systems of the SHENGUANG serial facilities and the theory analyses, as the diffraction of the light, the laser beam passing through the optical systems gets a spot on the focus plane. In order to reduce the edge of the main spot or the focus spot size, we advance a method of dividing aperture of the focusing optical system, the diffraction theory of light shows that the diffraction main spot is reduced, it indicates that the method of dividing the aperture may be recommended.

  19. Dissection of a circumscribed recombination hot spot in HIV-1 after a single infectious cycle.

    PubMed

    Galetto, Román; Giacomoni, Véronique; Véron, Michel; Negroni, Matteo

    2006-02-03

    Recombination is a major source of genetic heterogeneity in the human immunodeficiency virus type 1 (HIV-1) population. The main mechanism responsible for the generation of recombinant viruses is a process of copy choice between the two copies of genomic RNA during reverse transcription. We previously identified, after a single cycle of infection of cells in culture, a recombination hot spot within the gp120 gene, corresponding to the top portion of a RNA hairpin. Here, we determine that the hot region is circumscribed to 18 nucleotides located in the descending strand of the stem, following the sense of reverse transcription. Three factors appeared to be important, albeit at different extents, for the high rate of recombination observed in this region. The position of the hot sequence in the context of the RNA structure appears crucial, because changing its location within this structure triggered differences in recombination up to 20-fold. Another pivotal factor is the presence of a perfectly identical sequence between donor and acceptor RNA in the region of transfer, because single or double nucleotide differences in the hot spot were sufficient to almost completely abolish recombination in the region. Last, the primary structure of the hot region also influenced recombination, although with effects only in the 2-3-fold range. Altogether, these results provide the first molecular dissection of a hot spot in infected cells and indicate that several factors contribute to the generation of a site of preferential copy choice.

  20. Comparison between hot spot modeling and measurement of a superconducting hot electron bolometer mixer at submillimeter wavelengths

    NASA Astrophysics Data System (ADS)

    Miao, Wei; Delorme, Yan; Feret, Alexandre; Lefevre, Rolland; Lecomte, Benoit; Dauplay, Fred; Krieg, Jean-Michel; Beaudin, Gerard; Zhang, Wen; Ren, Yuan; Shi, Sheng-Cai

    2009-11-01

    This paper presents the modeling and measurement of a quasioptical niobium nitride superconducting hot electron bolometer mixer at submillimeter wavelengths. The modeling is performed with a distributed hot spot model which is based on solving a heat balance equation for electron temperature along the superconducting microbridge. Particular care has been taken during the modeling concerning the temperature-dependent resistance and the bias current dependence of the critical temperature of the device. The dc and mixing characteristics of this mixer have been computed and we have observed a quite good match between the predicted and the measured results for both dc characteristics and mixing performances at submillimeter wavelengths.

  1. Hot spot analysis applied to identify ecosystem services potential in Lithuania

    NASA Astrophysics Data System (ADS)

    Pereira, Paulo; Depellegrin, Daniel; Misiune, Ieva

    2016-04-01

    Hot spot analysis are very useful to identify areas with similar characteristics. This is important for a sustainable use of the territory, since we can identify areas that need to be protected, or restored. This is a great advantage in terms of land use planning and management, since we can allocate resources, reduce the economical costs and do a better intervention in the landscape. Ecosystem services (ES) are different according land use. Since landscape is very heterogeneous, it is of major importance understand their spatial pattern and where are located the areas that provide better ES and the others that provide less services. The objective of this work is to use hot-spot analysis to identify areas with the most valuable ES in Lithuania. CORINE land-cover (CLC) of 2006 was used as the main spatial information. This classification uses a grid of 100 m resolution and extracted a total of 31 land use types. ES ranking was carried out based on expert knowledge. They were asked to evaluate the ES potential of each different CLC from 0 (no potential) to 5 (very high potential). Hot spot analysis were evaluated using the Getis-ord test, which identifies cluster analysis available in ArcGIS toolbox. This tool identifies areas with significantly high low values and significant high values at a p level of 0.05. In this work we used hot spot analysis to assess the distribution of providing, regulating cultural and total (sum of the previous 3) ES. The Z value calculated from Getis-ord was used to statistical analysis to access the clusters of providing, regulating cultural and total ES. ES with high Z value show that they have a high number of cluster areas with high potential of ES. The results showed that the Z-score was significantly different among services (Kruskal Wallis ANOVA =834. 607, p<0.001). The Z score of providing services (0.096±2.239) were significantly higher than the total (0.093±2.045), cultural (0.080±1.979) and regulating (0.076±1.961). These

  2. Seismic Investigations of the O'Higgins Seamount Group: Aseismic Ridge Emplacement and Hydration of Hot Spot Modified Lithosphere

    NASA Astrophysics Data System (ADS)

    Kopp, H.; Flueh, E. R.; Papenberg, C.; Klaeschen, D.; Scientists, S.

    2003-12-01

    The segmentation of the South American continental margin has been linked to the subduction of bathymetric elevations on the oceanic plate. Offshore Valparaiso, Chile, the subduction of the hot spot generated aseismic Juan Fernandez Ridge correlates with the southern segment boundary of the Chilean flat slab. A causative relationship has been attributed to the enhanced buoyancy of anomalous crust and the shallowing of the Wadati-Benioff zone. In 2001, the SPOC project set out to investigate the effects of subducting aseismic ridges on the seismicity and structure of the Chilean margin. A seismic study along the easternmost extent of the Juan Fernandez Ridge reveals a magmatic origin dominated by extrusive processes for the O'Higgins Seamount Group. Hot spot magmatic processes have only moderately added to the crust of the Juan Fernandez Ridge. Thus only limited increased buoyancy may be expected from crustal thickening, insufficient to cause the shallowing of the subduction zone in the flat slab segment. The modest size of the volcanic edifices causes a flexural bending of the upper crust underneath O'Higgins Guyot, but does not affect the trend of the crust-mantle boundary. The off-axis aseismic ridge emplacement caused deficiencies of the lithosphere. These syngenetic structures are reactivated in the outer rise setting and evolve to ridge-parallel fracture zones with vertical offsets exceeding 800 m. Tomographic inversion of seismic mantle phases reveals reduced uppermost mantle velocities indicative of mineral alterations in the hot spot modified lithosphere. Uppermost mantle hydration is solely limited to the flawed lithosphere of the Juan Fernandez Ridge and is linked to the reactivation of hot spot induced fractures. Enhanced buoyancy due to crustal and upper mantle hydration may represent an important additional mechanism for shallow subduction.

  3. Analysis of binding site hot spots on the surface of Ras GTPase.

    PubMed

    Buhrman, Greg; O'Connor, Casey; Zerbe, Brandon; Kearney, Bradley M; Napoleon, Raeanne; Kovrigina, Elizaveta A; Vajda, Sandor; Kozakov, Dima; Kovrigin, Evgenii L; Mattos, Carla

    2011-11-04

    We have recently discovered an allosteric switch in Ras, bringing an additional level of complexity to this GTPase whose mutants are involved in nearly 30% of cancers. Upon activation of the allosteric switch, there is a shift in helix 3/loop 7 associated with a disorder to order transition in the active site. Here, we use a combination of multiple solvent crystal structures and computational solvent mapping (FTMap) to determine binding site hot spots in the "off" and "on" allosteric states of the GTP-bound form of H-Ras. Thirteen sites are revealed, expanding possible target sites for ligand binding well beyond the active site. Comparison of FTMaps for the H and K isoforms reveals essentially identical hot spots. Furthermore, using NMR measurements of spin relaxation, we determined that K-Ras exhibits global conformational dynamics very similar to those we previously reported for H-Ras. We thus hypothesize that the global conformational rearrangement serves as a mechanism for allosteric coupling between the effector interface and remote hot spots in all Ras isoforms. At least with respect to the binding sites involving the G domain, H-Ras is an excellent model for K-Ras and probably N-Ras as well. Ras has so far been elusive as a target for drug design. The present work identifies various unexplored hot spots throughout the entire surface of Ras, extending the focus from the disordered active site to well-ordered locations that should be easier to target.

  4. Narrow-bandwidth high-order harmonics driven by long-duration hot spots

    NASA Astrophysics Data System (ADS)

    Kozlov, Maxim; Kfir, Ofer; Fleischer, Avner; Kaplan, Alex; Carmon, Tal; Schwefel, Harald G. L.; Bartal, Guy; Cohen, Oren

    2012-06-01

    We predict and investigate the emission of high-order harmonics by atoms that cross intense laser hot spots that last for a nanosecond or longer. An atom that moves through a nanometer-scale hot spot at characteristic thermal velocity can emit high-order harmonics in a similar fashion to an atom that is irradiated by a short-duration (picosecond-scale) laser pulse. We analyze the collective emission from a thermal gas and from a jet of atoms. In both cases, the line shape of a high-order harmonic exhibits a narrow spike with spectral width that is determined by the bandwidth of the driving laser. Finally, we discuss a scheme for producing long-duration laser hot spots with intensity in the range of the intensity threshold for high-harmonic generation. In the proposed scheme, the hot spot is produced by a long laser pulse that is consecutively coupled to a high-quality micro-resonator and a metallic nano-antenna. This system may be used for generating ultra-narrow bandwidth extreme-ultraviolet radiation through frequency up-conversion of a low-cost compact pump laser.

  5. Building Electromagnetic Hot Spots in Living Cells via Target-Triggered Nanoparticle Dimerization.

    PubMed

    Zhou, Wen; Li, Qiang; Liu, Huiqiao; Yang, Jie; Liu, Dingbin

    2017-03-10

    Electromagnetic hot spots of surface-enhanced Raman scattering have been extensively employed for bioanalysis in solution or on a substrate, but building hot spots in living systems for probing targets of interest has not been achieved yet because of the complex and dynamic physiological environment. Herein, we show that a target-programmed nanoparticle dimerization can be combined with the background-free Raman reporters (alkyne, C≡C; nitrile, C≡N) for multiplexed imaging of microRNAs (miRNAs) in living cells. The in situ formation of plasmonic dimers results in an intense hot spot, thus dramatically enhancing the Raman signals of the reporters residing in the hot spot. More significantly, the reporters exhibit single nonoverlapping peaks in the cellular Raman-silent region (1800-2800 cm(-1)), thus eliminating spectral unmixing and background interference. A 3D Raman mapping technique was harnessed to monitor the spatial distribution of the dimers and thus the multiple miRNAs in cells. This approach could be extended to probe other biomarkers of interest for monitoring specific pathophysiological events at the live-cell level.

  6. Piezo-Electric Hypothesis for Hot Spot Formation Leading to Detonation

    NASA Astrophysics Data System (ADS)

    Montgomery, D. S.; Cawkwell, M. J.; Ramos, K. J.

    2015-06-01

    The impact to detonation sequence has been a long standing mystery in high explosives (HE). It is widely recognized that detonation begins in spatially-localized ``hot spots'' where chemistry initiates, but the physical mechanisms leading to hot spot formation are unknown. Here we revisit an old hypothesis, first suggested by Maycock and Grabenstein, that piezo-electric effects may be the cause of hot spot formation since most solid HE materials are observed to be highly piezo-electric. In this scenario, shock-induced pressure leads to electric fields of 100's MV/m, sufficient for dielectric breakdown and breaking chemical bonds, rather than via thermal effects. Extrapolation of statically measured piezo-electric coefficients for several HE materials suggests that shock pressures > 100-kbar might lead to field strengths > 100 - 1000 MV/m, but no definitive experimental proof has been obtained to support this. Here we discuss possible experiments to test this hypothesis by measuring the electric field in dynamic HE experiments correlated with hot spot formation. Work performed under the auspices of DOE by LANL under contract DE-AC52-06NA25396.

  7. Analysis of Binding Site Hot Spots on the Surface of Ras GTPase

    SciTech Connect

    Buhrman, Greg; O; #8242; Connor, Casey; Zerbe, Brandon; Kearney, Bradley M.; Napoleon, Raeanne; Kovrigina, Elizaveta A.; Vajda, Sandor; Kozakov, Dima; Kovrigin, Evgenii L.; Mattos, Carla

    2012-09-17

    We have recently discovered an allosteric switch in Ras, bringing an additional level of complexity to this GTPase whose mutants are involved in nearly 30% of cancers. Upon activation of the allosteric switch, there is a shift in helix 3/loop 7 associated with a disorder to order transition in the active site. Here, we use a combination of multiple solvent crystal structures and computational solvent mapping (FTMap) to determine binding site hot spots in the 'off' and 'on' allosteric states of the GTP-bound form of H-Ras. Thirteen sites are revealed, expanding possible target sites for ligand binding well beyond the active site. Comparison of FTMaps for the H and K isoforms reveals essentially identical hot spots. Furthermore, using NMR measurements of spin relaxation, we determined that K-Ras exhibits global conformational dynamics very similar to those we previously reported for H-Ras. We thus hypothesize that the global conformational rearrangement serves as a mechanism for allosteric coupling between the effector interface and remote hot spots in all Ras isoforms. At least with respect to the binding sites involving the G domain, H-Ras is an excellent model for K-Ras and probably N-Ras as well. Ras has so far been elusive as a target for drug design. The present work identifies various unexplored hot spots throughout the entire surface of Ras, extending the focus from the disordered active site to well-ordered locations that should be easier to target.

  8. Shock induced hot-spot formation and subsequent decomposition in granular, porous hexanitrostilbene explosive

    SciTech Connect

    Hayes, D B

    1981-01-01

    Experimental and theoretical studies on granular, porous hexanitrostilbene (HNS) explosive have yielded an increased understanding of microstructural processes occurring during initiation by shock loading. Experiments involved the planar impact of HNS specimens onto fused-silica targets. Chemical decomposition liberated gaseous products, causing the pressure in the HNS to rise. Velocity interferometry measured material velocity, hence, pressure at the fused silica/HNS interface. An analysis of this pressure excursion yields chemical decomposition history. The data are interpreted in terms of a quantitative two-temperature model which considers hot spots to be formed at pore sites as a result of the irreversible work accompanying the shock. Subsequently, decomposition completion is achieved by burn fronts which propagate radially out from each hot spot at a velocity which can be determined from the bulk decomposition rate. Analysis of the experimental data in the context of the model yields several important results: the delay times corresponding to hot-spot decomposition are shorter than expected; model calculations show about the same inferred hot-spot temperature for different initial porosities and particle sizes in HNS, shock-loaded to equal pressures, which is consistent with experimental results.

  9. Evolution and Persistence of 5-um Hot Spots at the Galileo Probe entry Latitude

    NASA Technical Reports Server (NTRS)

    Fisher, B. M.

    1997-01-01

    We present a study on the longtudinal locations, morphology and evolution of the 5-um hot spots at 6.5 deg. N latitude (planetocentric), from an extensive IRTF-NSFCAM data set spanning more that 3 years, which includes the date of the Galileo Probe entry.

  10. Microstrucutral Modeling of Hot Spot and Failure Mechanisms in RDX Energetic Aggregates

    DTIC Science & Technology

    2014-01-01

    with adiabatic plasticity heating, thermal decomposition, thermal conduction, and dissipated heat to predict and understand hot spot formation for a...which resulted in unbounded temperatures due to localized plasticity and thermal decomposition at the peripheries of the voids. Viscous dissipation...morphologies, dislocation densities, and crystal-binder interactions were coupled with adiabatic plasticity heating, thermal decomposition, thermal

  11. Hot-spot mix in ignition-scale implosions on the NIF

    SciTech Connect

    Regan, S. P.; Epstein, R.; McCrory, R. L.; Meyerhofer, D. D.; Sangster, T. C.; Hammel, B. A.; Suter, L. J.; Ralph, J.; Scott, H.; Barrios, M. A.; Bradley, D. K.; Callahan, D. A.; Cerjan, C.; Collins, G. W.; Dixit, S. N.; Doeppner, T.; Edwards, M. J.; Farley, D. R.; Glenn, S.; Glenzer, S. H.; and others

    2012-05-15

    Ignition of an inertial confinement fusion (ICF) target depends on the formation of a central hot spot with sufficient temperature and areal density. Radiative and conductive losses from the hot spot can be enhanced by hydrodynamic instabilities. The concentric spherical layers of current National Ignition Facility (NIF) ignition targets consist of a plastic ablator surrounding a thin shell of cryogenic thermonuclear fuel (i.e., hydrogen isotopes), with fuel vapor filling the interior volume [S. W. Haan et al., Phys. Plasmas 18, 051001 (2011)]. The Rev. 5 ablator is doped with Ge to minimize preheat of the ablator closest to the DT ice caused by Au M-band emission from the hohlraum x-ray drive [D. S. Clark et al., Phys. Plasmas 17, 052703 (2010)]. Richtmyer-Meshkov and Rayleigh-Taylor hydrodynamic instabilities seeded by high-mode () ablator-surface perturbations can cause Ge-doped ablator to mix into the interior of the shell at the end of the acceleration phase [B. A. Hammel et al., Phys. Plasmas 18, 056310 (2011)]. As the shell decelerates, it compresses the fuel vapor, forming a hot spot. K-shell line emission from the ionized Ge that has penetrated into the hot spot provides an experimental signature of hot-spot mix. The Ge emission from tritium-hydrogen-deuterium (THD) and deuterium-tritium (DT) cryogenic targets and gas-filled plastic-shell capsules, which replace the THD layer with a mass-equivalent CH layer, was examined. The inferred amount of hot-spot-mix mass, estimated from the Ge K-shell line brightness using a detailed atomic physics code [J. J. MacFarlane et al., High Energy Density Phys. 3, 181 (2006)], is typically below the 75-ng allowance for hot-spot mix [S. W. Haan et al., Phys. Plasmas 18, 051001 (2011)]. Predictions of a simple mix model, based on linear growth of the measured surface-mass modulations, are consistent with the experimental results.

  12. Role of hydrodynamic instability growth in hot-spot mass gain and fusion performance of inertial confinement fusion implosions

    SciTech Connect

    Srinivasan, Bhuvana; Tang, Xian-Zhu

    2014-10-15

    In an inertial confinement fusion target, energy loss due to thermal conduction from the hot-spot will inevitably ablate fuel ice into the hot-spot, resulting in a more massive but cooler hot-spot, which negatively impacts fusion yield. Hydrodynamic mix due to Rayleigh-Taylor instability at the gas-ice interface can aggravate the problem via an increased gas-ice interfacial area across which energy transfer from the hot-spot and ice can be enhanced. Here, this mix-enhanced transport effect on hot-spot fusion-performance degradation is quantified using contrasting 1D and 2D hydrodynamic simulations, and its dependence on effective acceleration, Atwood number, and ablation speed is identified.

  13. Galapagos-OIB signature in southern Central America: Mantle refertilization by arc-hot spot interaction

    NASA Astrophysics Data System (ADS)

    Gazel, Esteban; Carr, Michael J.; Hoernle, Kaj; Feigenson, Mark D.; Szymanski, David; Hauff, Folkmar; van den Bogaard, Paul

    2009-02-01

    Although most Central American magmas have a typical arc geochemical signature, magmas in southern Central America (central Costa Rica and Panama) have isotopic and trace element compositions with an ocean island basalt (OIB) affinity, similar to the Galapagos-OIB lavas (e.g., Ba/La < 40, La/Yb > 10, 206Pb/204Pb > 18.8). Our new data for Costa Rica suggest that this signature, unusual for a convergent margin, has a relatively recent origin (Late Miocene ˜6 Ma). We also show that there was a transition from typical arc magmas (analogous to the modern Nicaraguan volcanic front) to OIB-like magmas similar to the Galapagos hot spot. The geographic distribution of the Galapagos signature in recent lavas from southern Central America is present landward from the subduction of the Galapagos hot spot tracks (the Seamount Province and the Cocos/Coiba Ridge) at the Middle American Trench. The higher Pb isotopic ratios, relatively lower Sr and Nd isotopic ratios, and enriched incompatible-element signature of central Costa Rican magmas can be explained by arc-hot spot interaction. The isotopic ratios of central Costa Rican lavas require the subducting Seamount Province (Northern Galapagos Domain) component, whereas the isotopic ratios of the adakites and alkaline basalts from southern Costa Rica and Panama are in the geochemical range of the subducting Cocos/Coiba Ridge (Central Galapagos Domain). Geological and geochemical evidence collectively indicate that the relatively recent Galapagos-OIB signature in southern Central America represents a geochemical signal from subducting Galapagos hot spot tracks, which started to collide with the margin ˜8 Ma ago. The Galapagos hot spot contribution decreases systematically along the volcanic front from central Costa Rica to NW Nicaragua.

  14. Co-Occurring Atomic Contacts for the Characterization of Protein Binding Hot Spots.

    PubMed

    Liu, Qian; Ren, Jing; Song, Jiangning; Li, Jinyan

    2015-01-01

    A binding hot spot is a small area at a protein-protein interface that can make significant contribution to binding free energy. This work investigates the substantial contribution made by some special co-occurring atomic contacts at a binding hot spot. A co-occurring atomic contact is a pair of atomic contacts that are close to each other with no more than three covalent-bond steps. We found that two kinds of co-occurring atomic contacts can play an important part in the accurate prediction of binding hot spot residues. One is the co-occurrence of two nearby hydrogen bonds. For example, mutations of any residue in a hydrogen bond network consisting of multiple co-occurring hydrogen bonds could disrupt the interaction considerably. The other kind of co-occurring atomic contact is the co-occurrence of a hydrophobic carbon contact and a contact between a hydrophobic carbon atom and a π ring. In fact, this co-occurrence signifies the collective effect of hydrophobic contacts. We also found that the B-factor measurements of several specific groups of amino acids are useful for the prediction of hot spots. Taking the B-factor, individual atomic contacts and the co-occurring contacts as features, we developed a new prediction method and thoroughly assessed its performance via cross-validation and independent dataset test. The results show that our method achieves higher prediction performance than well-known methods such as Robetta, FoldX and Hotpoint. We conclude that these contact descriptors, in particular the novel co-occurring atomic contacts, can be used to facilitate accurate and interpretable characterization of protein binding hot spots.

  15. Co-Occurring Atomic Contacts for the Characterization of Protein Binding Hot Spots

    PubMed Central

    Liu, Qian; Ren, Jing; Song, Jiangning; Li, Jinyan

    2015-01-01

    A binding hot spot is a small area at a protein-protein interface that can make significant contribution to binding free energy. This work investigates the substantial contribution made by some special co-occurring atomic contacts at a binding hot spot. A co-occurring atomic contact is a pair of atomic contacts that are close to each other with no more than three covalent-bond steps. We found that two kinds of co-occurring atomic contacts can play an important part in the accurate prediction of binding hot spot residues. One is the co-occurrence of two nearby hydrogen bonds. For example, mutations of any residue in a hydrogen bond network consisting of multiple co-occurring hydrogen bonds could disrupt the interaction considerably. The other kind of co-occurring atomic contact is the co-occurrence of a hydrophobic carbon contact and a contact between a hydrophobic carbon atom and a π ring. In fact, this co-occurrence signifies the collective effect of hydrophobic contacts. We also found that the B-factor measurements of several specific groups of amino acids are useful for the prediction of hot spots. Taking the B-factor, individual atomic contacts and the co-occurring contacts as features, we developed a new prediction method and thoroughly assessed its performance via cross-validation and independent dataset test. The results show that our method achieves higher prediction performance than well-known methods such as Robetta, FoldX and Hotpoint. We conclude that these contact descriptors, in particular the novel co-occurring atomic contacts, can be used to facilitate accurate and interpretable characterization of protein binding hot spots. PMID:26675422

  16. [Hot spots in basic research fields for gastrointestinal cancer].

    PubMed

    Liu, Bingya

    2014-01-01

    Today, the comprehensive surgical treatment for gastrointestinal cancer is almost in the perfect stage. It is difficult to further improve the curative effect by surgery only. To improve the overall curative effect of gastrointestinal tumor, translational medicine research should be promoted in the fields of the early diagnosis, etiology and pathogenesis and comprehensive treatment. Researches of discovering the new tumor markers for early diagnosis of tumor, etiology and pathogenesis involve many aspects, including environmental factors, genetic susceptibility, variation and accumulation of genetics, and epigenetic changes, which should be transferred to new methods of treatment. This review summarizes the gastrointestinal tumor-associated hot topics in the field of basic research and its progress, and provides the clinical clues from their conversion.

  17. Demonstration of Fuel Hot-Spot Pressure in Excess of 50 Gbar for Direct-Drive, Layered Deuterium-Tritium Implosions on OMEGA

    NASA Astrophysics Data System (ADS)

    Regan, S. P.; Goncharov, V. N.; Igumenshchev, I. V.; Sangster, T. C.; Betti, R.; Bose, A.; Boehly, T. R.; Bonino, M. J.; Campbell, E. M.; Cao, D.; Collins, T. J. B.; Craxton, R. S.; Davis, A. K.; Delettrez, J. A.; Edgell, D. H.; Epstein, R.; Forrest, C. J.; Frenje, J. A.; Froula, D. H.; Gatu Johnson, M.; Glebov, V. Yu.; Harding, D. R.; Hohenberger, M.; Hu, S. X.; Jacobs-Perkins, D.; Janezic, R.; Karasik, M.; Keck, R. L.; Kelly, J. H.; Kessler, T. J.; Knauer, J. P.; Kosc, T. Z.; Loucks, S. J.; Marozas, J. A.; Marshall, F. J.; McCrory, R. L.; McKenty, P. W.; Meyerhofer, D. D.; Michel, D. T.; Myatt, J. F.; Obenschain, S. P.; Petrasso, R. D.; Radha, P. B.; Rice, B.; Rosenberg, M. J.; Schmitt, A. J.; Schmitt, M. J.; Seka, W.; Shmayda, W. T.; Shoup, M. J.; Shvydky, A.; Skupsky, S.; Solodov, A. A.; Stoeckl, C.; Theobald, W.; Ulreich, J.; Wittman, M. D.; Woo, K. M.; Yaakobi, B.; Zuegel, J. D.

    2016-07-01

    A record fuel hot-spot pressure Phs=56 ±7 Gbar was inferred from x-ray and nuclear diagnostics for direct-drive inertial confinement fusion cryogenic, layered deuterium-tritium implosions on the 60-beam, 30-kJ, 351-nm OMEGA Laser System. When hydrodynamically scaled to the energy of the National Ignition Facility, these implosions achieved a Lawson parameter ˜60 % of the value required for ignition [A. Bose et al., Phys. Rev. E 93, LM15119ER (2016)], similar to indirect-drive implosions [R. Betti et al., Phys. Rev. Lett. 114, 255003 (2015)], and nearly half of the direct-drive ignition-threshold pressure. Relative to symmetric, one-dimensional simulations, the inferred hot-spot pressure is approximately 40% lower. Three-dimensional simulations suggest that low-mode distortion of the hot spot seeded by laser-drive nonuniformity and target-positioning error reduces target performance.

  18. Demonstration of fuel hot-spot pressure in excess of 50 Gbar for direct-drive, layered deuterium-tritium implosions on OMEGA

    DOE PAGES

    Regan, S. P.; Goncharov, V. N.; Igumenshchev, I. V.; ...

    2016-07-07

    A record fuel hot-spot pressure Phs = 56±7 Gbar was inferred from x-ray and nuclear diagnostics for direct-drive inertial confinement fusion cryogenic, layered deuterium–tritium implosions on the 60-beam, 30-kJ, 351-nm OMEGA Laser System. When hydrodynamically scaled to the energy of the National Ignition Facility (NIF), these implosions achieved a Lawson parameter ~60% of the value required for ignition [A. Bose et al., Phys. Rev. E (in press)], similar to indirect-drive implosions [R. Betti et al., Phys. Rev. Lett. 114, 255003 (2015)], and nearly half of the direct-drive ignition-threshold pressure. Relative to symmetric, one-dimensional simulations, the inferred hot-spot pressure is ~40%more » lower. Furthermore, three-dimensional simulations suggest that low-mode distortion of the hot spot seeded by laser-drive nonuniformity and target-positioning error reduces target performance.« less

  19. Demonstration of fuel hot-spot pressure in excess of 50 Gbar for direct-drive, layered deuterium-tritium implosions on OMEGA

    SciTech Connect

    Regan, S. P.; Goncharov, V. N.; Igumenshchev, I. V.; Sangster, T. C.; Betti, R.; Bose, A.; Boehly, T. R.; Bonino, M. J.; Campbell, E. M.; Cao, D.; Collins, T. J. B.; Craxton, R. S.; Davis, A. K.; Delettrez, J. A.; Edgell, D. H.; Epstein, R.; Forrest, C. J.; Frenje, J. A.; Froula, D. H.; Gatu Johnson, M.; Glebov, V. Yu.; Harding, D. R.; Hohenberger, M.; Hu, S. X.; Jacobs-Perkins, D.; Janezic, R.; Karasik, M.; Keck, R. L.; Kelly, J. H.; Kessler, T. J.; Knauer, J. P.; Kosc, T. Z.; Loucks, S. J.; Marozas, J. A.; Marshall, F. J.; McCrory, R. L.; McKenty, P. W.; Meyerhofer, D. D.; Michel, D. T.; Myatt, J. F.; Obenschain, S. P.; Petrasso, R. D.; Radha, P. B.; Rice, B.; Rosenberg, M. J.; Schmitt, A. J.; Schmitt, M. J.; Seka, W.; Shmayda, W. T.; Shoup, III, M. J.; Shvydky, A.; Skupsky, S.; Solodov, A. A.; Stoeckl, C.; Theobald, W.; Ulreich, J.; Wittman, M. D.; Woo, K. M.; Yaakobi, B.; Zuegel, J. D.

    2016-07-07

    A record fuel hot-spot pressure Phs = 56±7 Gbar was inferred from x-ray and nuclear diagnostics for direct-drive inertial confinement fusion cryogenic, layered deuterium–tritium implosions on the 60-beam, 30-kJ, 351-nm OMEGA Laser System. When hydrodynamically scaled to the energy of the National Ignition Facility (NIF), these implosions achieved a Lawson parameter ~60% of the value required for ignition [A. Bose et al., Phys. Rev. E (in press)], similar to indirect-drive implosions [R. Betti et al., Phys. Rev. Lett. 114, 255003 (2015)], and nearly half of the direct-drive ignition-threshold pressure. Relative to symmetric, one-dimensional simulations, the inferred hot-spot pressure is ~40% lower. Furthermore, three-dimensional simulations suggest that low-mode distortion of the hot spot seeded by laser-drive nonuniformity and target-positioning error reduces target performance.

  20. Newberry Volcano, Oregon: No traveling hot spot is needed

    NASA Astrophysics Data System (ADS)

    Donnelly-Nolan, J. M.

    2009-12-01

    Newberry Volcano (NV) has been interpreted as forming the end of the traveling “Newberry Hot Spot” responsible for producing progressively younger rhyolites as it passed westward under the High Lava Plains (HLP). However, Newberry rhyolites are unlike those to the east in the HLP. HLP rhyolites are characterized by high silica (>74%) and high FeO (Ford et al., 2009 GSA abs.). None of the Holocene Newberry rhyolites and only a few of its older rhyolites have such high silica contents. The NV rhyolites have low FeO contents comparable to those of rhyolites to the west near the Cascades axis. NV is situated at the western edge of the HLP (a subprovince of the Basin & Range) east of the Cascades arc axis, its broad shield shape in striking contrast to typical Cascades stratocones. Isotopic and petrologic evidence (Graham et al., JVGR 2009; Carlson et al., 2008 Goldschmidt abs.; Grove et al, 2009 GSA abs.) indicate that Newberry lava compositions are unlike HLP lavas, and instead include a strong input of subduction fluid. The shape, size, and rear-arc position of NV are like those of Medicine Lake volcano (MLV) east of Mount Shasta in northern California, also often misinterpreted as a Basin & Range volcano. Newberry is even larger than the 2000 km2 MLV. In fewer than half a million years, NV has built a km-high edifice, suffered at least 3 caldera collapses, and its lavas have covered approximately 3000 km2, making it the largest of any Cascade volcano. At both NV and MLV, the central caldera is situated over the intersection of major tectonic trends. The widespread distribution of vents and their dominant NE to NW trends at both volcanoes attest to tectonic control of eruptive pathways and to broad magmatic foci. Fluids are required to generate the calcalkaline basalts present at both volcanoes (especially NV) in addition to tholeiitic basalts. Hydrous arc magmatic inputs also play a key role at both NV and MLV in generation of significant volumes of rhyolite and

  1. Suppressing local hot spots due to eddy currents in magnetic coil systems

    NASA Astrophysics Data System (ADS)

    Yao, Zhen; Shojinaga, Aaron; Wu, Yong; Shvartsman, Shmaryu; Eagan, Timothy; Chmielewski, Thomas; Brown, Robert

    2011-03-01

    A particular goal in magnetic field applications is to avoid eddy current heating in coils and shields. It is important, in MRI, for example, to avoid hot spots near the patient to be imaged as well as in the vicinity of soldering joints. We develop effective analytical formulas for the eddy current behavior of sources close to surrounding conductors, we verify these via numerical simulations, and we make successful comparisons to corresponding experimental temperature distributions. Optimized patterns of incisions made in the conductors are discovered for addressing particularly troublesome heating locations. The criteria include the need to minimize the number and length of the cuts. Theory and experiment are in agreement on the efficacy of this method for reducing steady-state temperatures. An example of results in the practical design of commercial coils and shields is that a single cut parallel to the long edge of rectangular conductors reduces the temperatures much more than making multiple cuts parallel to the short edge. Supported by Ohio Third Frontier Program

  2. Cassini VIMS Spectra of the Thermal Emission from Hot Spots Along Enceladus South Pole Fissures

    NASA Astrophysics Data System (ADS)

    Goguen, Jay D.; Buratti, Bonnie J.; Cassini VIMS Team

    2016-10-01

    Most of the south pole fissure region has not been directly illuminated by sunlight since the sub-solar point moved into the northern hemisphere in 2009, thereby eliminating the background of reflected sunlight at VIMS wavelengths and making the fissure thermal emission readily measureable. Since then, VIMS has measured spectra of at least 11 hot spots along the fissures. Most of these measurements were acquired in ride-along mode with CIRS as the prime instrument. During at least 2 encounters, VIMS and CIRS acquired simultaneous or near-simultaneous spectra of the same fissure location. VIMS spectra include multiple hot spots along Damascus, Baghdad, Cairo, and a likely hot spot on Alexandria.All of the VIMS spectra examined to date are consistent with this scenario of a self-regulating fissure maximum T~200 K with brighter VIMS emissions corresponding to fissures up to ~20 m wide. Emission from the warm fissure interior walls dominate the VIMS spectra with <15% contributed by conductive heating of the adjacent terrain at VIMS wavelengths.CIRS spectra report slightly cooler T's due to CIRS increased sensitivity to lower T emission at longer wavelengths and averaging over contributions from both the hottest and cooler areas. Combined analysis of the CIRS and VIMS spectra spanning 3 to 500 micron wavelengths promises to reveal the distribution of [T, area] near the fissures that cannot be spatially resolved. This [T, area] distribution holds the key to understanding how heat is transferred to the surface within a few 100 m of the fissures.The VIMS-detected emission is concentrated in localized hot spots along the fissures and does not seem to be distributed continuously along them. CIRS spectra suggest a more continuous distribution of the emission along the fissure length. Jets locations also are distributed along the fissure length and it appears that the VIMS-detected hot spots in general correlate with jet locations, but not all of the jet locations have been

  3. Structural basis for human PRDM9 action at recombination hot spots.

    PubMed

    Patel, Anamika; Horton, John R; Wilson, Geoffrey G; Zhang, Xing; Cheng, Xiaodong

    2016-02-01

    The multidomain zinc finger (ZnF) protein PRDM9 (PRD1-BF1-RIZ1 homologous domain-containing 9) is thought to influence the locations of recombination hot spots during meiosis by sequence-specific DNA binding and trimethylation of histone H3 Lys4. The most common variant of human PRDM9, allele A (hPRDM9A), recognizes the consensus sequence 5'-NCCNCCNTNNCCNCN-3'. We cocrystallized ZnF8-12 of hPRDM9A with an oligonucleotide representing a known hot spot sequence and report the structure here. ZnF12 was not visible, but ZnF8-11, like other ZnF arrays, follows the right-handed twist of the DNA, with the α helices occupying the major groove. Each α helix makes hydrogen-bond (H-bond) contacts with up to four adjacent bases, most of which are purines of the complementary DNA strand. The consensus C:G base pairs H-bond with conserved His or Arg residues in ZnF8, ZnF9, and ZnF11, and the consensus T:A base pair H-bonds with an Asn that replaces His in ZnF10. Most of the variable base pairs (N) also engage in H bonds with the protein. These interactions appear to compensate to some extent for changes from the consensus sequence, implying an adaptability of PRDM9 to sequence variations. We investigated the binding of various alleles of hPRDM9 to different hot spot sequences. Allele C was found to bind a C-specific hot spot with higher affinity than allele A bound A-specific hot spots, perhaps explaining why the former is dominant in A/C heterozygotes. Allele L13 displayed higher affinity for several A-specific sequences, allele L9/L24 displayed lower affinity, and allele L20 displayed an altered sequence preference. These differences can be rationalized structurally and might contribute to the variation observed in the locations and activities of meiotic recombination hot spots.

  4. Structural basis for human PRDM9 action at recombination hot spots

    PubMed Central

    Patel, Anamika; Horton, John R.; Wilson, Geoffrey G.; Zhang, Xing; Cheng, Xiaodong

    2016-01-01

    The multidomain zinc finger (ZnF) protein PRDM9 (PRD1–BF1–RIZ1 homologous domain-containing 9) is thought to influence the locations of recombination hot spots during meiosis by sequence-specific DNA binding and trimethylation of histone H3 Lys4. The most common variant of human PRDM9, allele A (hPRDM9A), recognizes the consensus sequence 5′-NCCNCCNTNNCCNCN-3′. We cocrystallized ZnF8–12 of hPRDM9A with an oligonucleotide representing a known hot spot sequence and report the structure here. ZnF12 was not visible, but ZnF8–11, like other ZnF arrays, follows the right-handed twist of the DNA, with the α helices occupying the major groove. Each α helix makes hydrogen-bond (H-bond) contacts with up to four adjacent bases, most of which are purines of the complementary DNA strand. The consensus C:G base pairs H-bond with conserved His or Arg residues in ZnF8, ZnF9, and ZnF11, and the consensus T:A base pair H-bonds with an Asn that replaces His in ZnF10. Most of the variable base pairs (N) also engage in H bonds with the protein. These interactions appear to compensate to some extent for changes from the consensus sequence, implying an adaptability of PRDM9 to sequence variations. We investigated the binding of various alleles of hPRDM9 to different hot spot sequences. Allele C was found to bind a C-specific hot spot with higher affinity than allele A bound A-specific hot spots, perhaps explaining why the former is dominant in A/C heterozygotes. Allele L13 displayed higher affinity for several A-specific sequences, allele L9/L24 displayed lower affinity, and allele L20 displayed an altered sequence preference. These differences can be rationalized structurally and might contribute to the variation observed in the locations and activities of meiotic recombination hot spots. PMID:26833727

  5. High-temperature hot spots on Io as seen by the Galileo solid state imaging (SSI) experiment

    USGS Publications Warehouse

    McEwen, A.S.; Simonelli, D.P.; Senske, D.R.; Klaasen, K.P.; Keszthelyi, L.; Johnson, T.V.; Geissler, P.E.; Carr, M.H.; Belton, M.J.S.

    1997-01-01

    High-temperature hot spots on Io have been imaged at ???50 km spatial resolution by Galileo's CCD imaging system (SSI). Images were acquired during eclipses (Io in Jupiter's shadow) via the SSI clear filter (???0.4-1.0 ??m), detecting emissions from both small intense hot spots and diffuse extended glows associated with Io's atmosphere and plumes. A total of 13 hot spots have been detected over ???70% of Io's surface. Each hot spot falls precisely on a low-albedo feature corresponding to a caldera floor and/or lava flow. The hot-spot temperatures must exceed ???700 K for detection by SSI. Observations at wavelengths longer than those available to SSI require that most of these hot spots actually have significantly higher temperatures (???1000 K or higher) and cover small areas. The high-temperature hot spots probably mark the locations of active silicate volcanism, supporting suggestions that the eruption and near-surface movement of silicate magma drives the heat flow and volcanic activity of Io. Copyright 1997 by the American Geophysical Union.

  6. 40 CFR 93.123 - Procedures for determining localized CO, PM10, and PM2.5 concentrations (hot-spot analysis).

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... CO, PM10, and PM2.5 concentrations (hot-spot analysis). 93.123 Section 93.123 Protection of.... or the Federal Transit Laws § 93.123 Procedures for determining localized CO, PM10, and PM2.5 concentrations (hot-spot analysis). (a) CO hot-spot analysis. (1) The demonstrations required by §...

  7. 40 CFR 93.123 - Procedures for determining localized CO, PM10, and PM2.5 concentrations (hot-spot analysis).

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... CO, PM10, and PM2.5 concentrations (hot-spot analysis). 93.123 Section 93.123 Protection of.... or the Federal Transit Laws § 93.123 Procedures for determining localized CO, PM10, and PM2.5 concentrations (hot-spot analysis). (a) CO hot-spot analysis. (1) The demonstrations required by §...

  8. 40 CFR 93.123 - Procedures for determining localized CO, PM10, and PM2.5 concentrations (hot-spot analysis).

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... CO, PM10, and PM2.5 concentrations (hot-spot analysis). 93.123 Section 93.123 Protection of.... or the Federal Transit Laws § 93.123 Procedures for determining localized CO, PM10, and PM2.5 concentrations (hot-spot analysis). (a) CO hot-spot analysis. (1) The demonstrations required by §...

  9. 40 CFR 93.123 - Procedures for determining localized CO, PM10, and PM2.5 concentrations (hot-spot analysis).

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... CO, PM10, and PM2.5 concentrations (hot-spot analysis). 93.123 Section 93.123 Protection of.... or the Federal Transit Laws § 93.123 Procedures for determining localized CO, PM10, and PM2.5 concentrations (hot-spot analysis). (a) CO hot-spot analysis. (1) The demonstrations required by §...

  10. "Rings of saturn-like" nanoarrays with high number density of hot spots for surface-enhanced Raman scattering

    NASA Astrophysics Data System (ADS)

    Dai, Zhigao; Mei, Fei; Xiao, Xiangheng; Liao, Lei; Fu, Lei; Wang, Jiao; Wu, Wei; Guo, Shishang; Zhao, Xinyue; Li, Wei; Ren, Feng; Jiang, Changzhong

    2014-07-01

    The Ag nanoparticles (NPs) surrounding triangular nanoarrays (TNAs) with high number density of surface-enhanced Raman scattering (SERS) hot spots (SERS hot spots ring) are prepared by a combination of NPs deposition and subsequent colloid lithography processing. Owing to the SERS hot spots ring, the Ag NPs surrounding TNAs have been proved an excellent candidate for ultrasensitive molecular sensing for their high SERS signal enhancing capacity in experiments and theories. The Ag NPs surrounding TNAs can be readily used for the quick detection of low concentrations of molecules related to food safety; herein, detection of melamine is discussed.

  11. Location of hot spots in integrated circuits by monitoring the substrate thermal-phase lag with the mirage effect.

    PubMed

    Perpiñà, Xavier; Altet, Josep; Jordà, Xavier; Vellvehi, Miquel; Mestres, Narcís

    2010-08-01

    This Letter presents a solution for locating hot spots in active integrated circuits (IC) and devices. This method is based on sensing the phase lag between the power periodically dissipated by a device integrated in an IC (hot spot) and its corresponding thermal gradient into the chip substrate by monitoring the heat-induced refractive index gradient with a laser beam. The experimental results show a high accuracy and prove the suitability of this technique to locate and characterize devices behaving as hot spots in current IC technologies.

  12. Mesoscopic description of hot spot phenomena: a route for hybrid multiscale simulations

    NASA Astrophysics Data System (ADS)

    Maillet, Jean-Bernard

    2015-06-01

    We describe large scale simulations of hot spot phenomena in single TATB crystals within the DPDE framework. The mesoscopic DPDE model is calibrated on all atom simulations, and particular attention is given to the rate of heat exchange between intramolecular and intermolecular degrees of freedom, which control the non-equilibrium behaviour of the system. Simulations of pore collapse at different shock speeds and for different pore sizes are performed, and a criterium for the quantification of the hot spot energy is proposed. These results are considered as reference data for subsequent comparison with top down simulations of similar processes. We present a reformulation of the (hydrodynamic) SDPD method allowing a direct coupling with the DPDE model, then opening the route for hybrid multiscale simulations.

  13. Mantle shear-wave velocity structure beneath the Hawaiian hot spot.

    PubMed

    Wolfe, Cecily J; Solomon, Sean C; Laske, Gabi; Collins, John A; Detrick, Robert S; Orcutt, John A; Bercovici, David; Hauri, Erik H

    2009-12-04

    Defining the mantle structure that lies beneath hot spots is important for revealing their depth of origin. Three-dimensional images of shear-wave velocity beneath the Hawaiian Islands, obtained from a network of sea-floor and land seismometers, show an upper-mantle low-velocity anomaly that is elongated in the direction of the island chain and surrounded by a parabola-shaped high-velocity anomaly. Low velocities continue downward to the mantle transition zone between 410 and 660 kilometers depth, a result that is in agreement with prior observations of transition-zone thinning. The inclusion of SKS observations extends the resolution downward to a depth of 1500 kilometers and reveals a several-hundred-kilometer-wide region of low velocities beneath and southeast of Hawaii. These images suggest that the Hawaiian hot spot is the result of an upwelling high-temperature plume from the lower mantle.

  14. Influence of hot spot features on the initiation characteristics of heterogeneous nitromethane

    SciTech Connect

    Dattelbaum, Dana M; Sheffield, Stephen A; Stahl, David B; Dattelbaum, Andrew M; Engelke, Ray

    2010-01-01

    To gain insights into the critical hot spot features influencing energetic materials initiation characteristics, well-defined micron-scale particles have been intentionally introduced into the homogeneous explosive nitromethane (NM). Two types of potential hot spot origins have been examined - shock impedance mismatches using solid silica beads, and porosity using hollow microballoons - as well as their sizes and inter-particle separations. Here, we present the results of several series of gas gun-driven plate impact experiments on NM/particle mixtures with well-controlled shock inputs. Detailed insights into the nature of the reactive flow during the build-up to detonation have been obtained from the response of in-situ electromagnetic gauges, and the data have been used to establish Pop-plots (run-distance-to-detonation vs. shock input pressure) for the mixtures. Comparisons of sensitization effects and energy release characteristics relative to the initial shock front between the solid and hollow beads are presented.

  15. Resolving the electromagnetic mechanism of surface-enhanced light scattering at single hot spots

    PubMed Central

    Alonso-González, P.; Albella, P.; Schnell, M.; Chen, J.; Huth, F.; García-Etxarri, A.; Casanova, F.; Golmar, F.; Arzubiaga, L.; Hueso, L.E.; Aizpurua, J.; Hillenbrand, R.

    2012-01-01

    Light scattering at nanoparticles and molecules can be dramatically enhanced in the 'hot spots' of optical antennas, where the incident light is highly concentrated. Although this effect is widely applied in surface-enhanced optical sensing, spectroscopy and microscopy, the underlying electromagnetic mechanism of the signal enhancement is challenging to trace experimentally. Here we study elastically scattered light from an individual object located in the well-defined hot spot of single antennas, as a new approach to resolve the role of the antenna in the scattering process. We provide experimental evidence that the intensity elastically scattered off the object scales with the fourth power of the local field enhancement provided by the antenna, and that the underlying electromagnetic mechanism is identical to the one commonly accepted in surface-enhanced Raman scattering. We also measure the phase shift of the scattered light, which provides a novel and unambiguous fingerprint of surface-enhanced light scattering. PMID:22353715

  16. Hot-spot contributions in shocked high explosives from mesoscale ignition models

    NASA Astrophysics Data System (ADS)

    Levesque, G.; Vitello, P.; Howard, W. M.

    2013-06-01

    High explosive performance and sensitivity is strongly related to the mesoscale defect densities. Bracketing the population of mesoscale hot spots that are active in the shocked ignition of explosives is important for the development of predictive reactive flow models. By coupling a multiphysics-capable hydrodynamics code (ale3d) with a chemical kinetics solver (cheetah), we can parametrically analyze different pore sizes undergoing collapse in high pressure shock conditions with evolving physical parameter fields. Implementing first-principles based decomposition kinetics, burning hot spots are monitored, and the regimes of pore sizes that contribute significantly to burnt mass faction and those that survive thermal conduction on the time scales of ignition are elucidated. Comparisons are drawn between the thermal explosion theory and the multiphysics models for the determination of nominal pore sizes that burn significantly during ignition for the explosive 1,3,5-triamino-2,4,6-trinitrobenzene.

  17. ELIPGRID-PC: A PC program for calculating hot spot probabilities

    SciTech Connect

    Davidson, J.R.

    1994-10-01

    ELIPGRID-PC, a new personal computer program has been developed to provide easy access to Singer`s 1972 ELIPGRID algorithm for hot-spot detection probabilities. Three features of the program are the ability to determine: (1) the grid size required for specified conditions, (2) the smallest hot spot that can be sampled with a given probability, and (3) the approximate grid size resulting from specified conditions and sampling cost. ELIPGRID-PC also provides probability of hit versus cost data for graphing with spread-sheets or graphics software. The program has been successfully tested using Singer`s published ELIPGRID results. An apparent error in the original ELIPGRID code has been uncovered and an appropriate modification incorporated into the new program.

  18. Synthesis study of an erosion hot spot, Ocean Beach, California

    USGS Publications Warehouse

    Barnard, Patrick L.; Hansen, Jeff E.; Erikson, Li H.

    2012-01-01

    A synthesis of multiple coastal morphodynamic research efforts is presented to identify the processes responsible for persistent erosion along a 1-km segment of 7-km-long Ocean Beach in San Francisco, California. The beach is situated adjacent to a major tidal inlet and in the shadow of the ebb-tidal delta at the mouth of San Francisco Bay. Ocean Beach is exposed to a high-energy wave climate and significant alongshore variability in forcing introduced by varying nearshore bathymetry, tidal forcing, and beach morphology (e.g., beach variably backed by seawall, dunes, and bluffs). In addition, significant regional anthropogenic factors have influenced sediment supply and tidal current strength. A variety of techniques were employed to investigate the erosion at Ocean Beach, including historical shoreline and bathymetric analysis, monthly beach topographic surveys, nearshore and regional bathymetric surveys, beach and nearshore grain size analysis, two surf-zone hydrodynamic experiments, four sets of nearshore wave and current experiments, and several numerical modeling approaches. Here, we synthesize the results of 7 years of data collection to lay out the causes of persistent erosion, demonstrating the effectiveness of integrating an array of data sets covering a huge range of spatial scales. The key findings are as follows: anthropogenic influences have reduced sediment supply from San Francisco Bay, leading to pervasive contraction (i.e., both volume and area loss) of the ebb-tidal delta, which in turn reduced the regional grain size and modified wave focusing patterns along Ocean Beach, altering nearshore circulation and sediment transport patterns. In addition, scour associated with an exposed sewage outfall pipe causes a local depression in wave heights, significantly modifying nearshore circulation patterns that have been shown through modeling to be key drivers of persistent erosion in that area.

  19. Simulated impact of self-generated magnetic fields in the hot-spot of NIF implosions

    NASA Astrophysics Data System (ADS)

    Partha, M. A.; Haan, S. W.; Koning, J.; Marinak, M. M.; Weber, C. R.; Clark, D. S.

    2016-10-01

    Deviations from sphericity in an imploded hot-spot result in magnetic fields generated by the Biermann battery effect. The magnetic field can reduce thermal conductivity, affect α transport, change instability growth, and cause magnetic pressure. Previous estimates of these effects have indicated that they are not of great consequence, but have suggested that they could plausibly affect NIF observables such as yield and ion temperature by 5-25%. Using the MHD capability in the Hydra code, we evaluated the impact of these processes in a post-shot model for a typical NIF implosion. Various implosion asymmetries were implemented, with the goal of surveying plausible implosion configurations to find the geometry in which the MHD effects were the most significant. Magnetic fields are estimated to approach 104 Tesla, and to affect conductivity locally by more than 50%, but global impact on observables is small in most cases. Work performed under the auspices of the U.S. D.O.E. by Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344.

  20. Hot spot model of MagLIF implosions: Nernst term effect on magnetic flux losses

    NASA Astrophysics Data System (ADS)

    Garcia Rubio, Fernando; Sanz Recio, Javier; Betti, Riccardo

    2016-10-01

    An analytical model of a collisional plasma being compressed by a cylindrical liner is proposed and solved in a magnetized liner inertial fusion-like context. The implosion is assumed to be isobaric, and the magnetic diffusion is confined to a thin layer near the liner. Both unmagnetized and magnetized plasma cases are considered. The model reduces to a system of two partial differential equations for temperature and magnetic field. Special attention is given to the effect of the Nernst term on the evolution of the magnetic field. Scaling laws for temperature, magnetic field, hot spot mass increase and magnetic field losses are obtained. The temperature and magnetic field spatial profiles tend to a self-similar state. It is found that when the Nernst term is taken into account, the magnetic field is advected towards the liner, and the magnetic flux losses are independent of the magnetic Lewis number. Research supported by the Spanish Ministerio de Economía y Competitividad, Project No. ENE2014-54960R. Acknowledgements to the Laboratory of Laser Energetics (Rochester) for its hospitality.

  1. {open_quote}{open_quote}Hot spots{close_quote}{close_quote} effect in nuclear shadowing

    SciTech Connect

    Zhu, W.; Ruan, J. |

    1996-07-01

    Shadowing in inelastic lepton-nucleus scattering is analyzed by using the modified Gribov-Levin-Ryskin evolution equation. We find that a comparison of the structure functions between nuclear and proton targets at {ital x}{lt}10{sup {minus}3} and {ital Q}{sup 2}{approx_gt}1 GeV{sup 2} can provide useful information about the hot spots of the nucleon. {copyright} {ital 1996 The American Physical Society.}

  2. Aquatic Ecosystem Exposure Associated with Atmospheric Mercury Deposition: Importance of Watershed and Water Body Hot Spots and Hot Moments

    NASA Astrophysics Data System (ADS)

    Knightes, C. D.; Golden, H. E.

    2008-12-01

    Atmospheric deposition of divalent mercury (Hg(II)) is the often the primary driving force for mercury contamination in fish tissue, resulting in mercury exposure to wildlife and humans. In lake systems associated with small watersheds, direct deposition to the water surface is typically the dominant mercury loading source; however, in lake systems with large watersheds and river systems, these inputs may be relatively small compared to loadings from the watershed via erosion and surface runoff. Within each system, transformation of the deposited mercury into the environmentally relevant form, methylmercury (MeHg), proceeds at different rates largely regulated by physical characteristics such as watershed land use types and water body hydraulic residence times, as water body chemistry, such as pH and trophic status Therefore, to fully represent mercury exposure in aquatic ecosystems, we must couple watershed models with water body models and explore where, why, and when hot spots and hot moments of transformation and transport occur. Here we link the simulated atmospheric mercury deposition results from the Community Multi-Scale Air Quality (CMAQ) model, a spatially distributed grid-based watershed mercury (Hg) model (GBMM), and the Water Quality Analysis Simulation Program (WASP). We use this multi-media modeling framework to simulate mercury species cycling over time for the different river reaches and watersheds within the Cape Fear River Basin, North Carolina. Through these simulations we investigate the importance of specific watershed and surface water system characteristics in simulating MeHg exposure concentrations. Because GBMM is a spatially-distributed model we are able to investigate the importance of such factors (i.e., watershed area, land-use types, and land-use percentages) in transporting and transforming deposited mercury. We present how particular land-use types and land-use change influence total loading and total mercury concentrations, how

  3. Characterizing Denitrification Hot Spots and Hot Moments to Improve Understanding in a Mass Balance Approach to the Nitrogen Cycle

    NASA Astrophysics Data System (ADS)

    Morris, C. K.; Barclay, J. R.; Anderson, T. R.; Walter, M. T.

    2013-12-01

    Several transformation processes of the nitrogen cycle control the availability of this primary nutrient to living organisms. Understanding the multiple processes that take place in the vadose zone is critical to developing management strategies, predicting air and aquatic impacts, and maximizing functionality of landscapes. The mass balance approach to studying the nitrogen cycle is useful in quantifying rates of these processes. In combination with field measurements, hypotheses about the rates of difficult-to-measure processes such as denitrification (DN), can be tested. In this study we extend the mass balance approach to investigate the significance of DN hot spots and hot moments on aggregate DN. Often in nitrogen balance approaches, DN is treated as the residual difference of the outputs and inputs derived from field measurements and farm management records. However, this provides little information about when and where DN occurs and assumes the remainder nitrogen is associated with this process. In this project we compare two methods of calculating DN as part of a farm nitrogen balance study. Method one uses an empirical relationship derived from in-situ DN measurements related to a soil topographic index. Method two characterizes the process with a model that tracks temperature, carbon availability, and soil moisture and is calibrated with in-situ DN measurements. When the nitrogen output by DN was calculated, both methods were successful in coming closer to closing the farm nitrogen balance. Results from method one identify annual hot spots of denitrification, while method two improves characterization of the daily hot moments of denitrification.

  4. Acoustic timescale characterisation of a one-dimensional model hot spot

    NASA Astrophysics Data System (ADS)

    Kurtz, Michael D.; Regele, Jonathan D.

    2014-09-01

    Hot spots have been shown to be the autoignition centre in reactive mixtures. Linear temperature gradients and thermal stratification are used to characterise their behaviour. In this work, a model hot spot is considered by combining a linear temperature gradient with a constant temperature plateau. This approach retains the simplicity of a linear temperature gradient, but captures the effects of a local temperature maximum of finite size. A one-step Arrhenius reaction for H2-air is used to model the reactive mixture. Plateaus of three different initial sizes spanning two orders of magnitude are simulated. Each length corresponds to a different ratio of excitation time to acoustic time. It is shown that ratios less than unity react at nearly isochoric conditions while ratios greater than unity react at nearly isobaric conditions. Furthermore, it is demonstrated that the gasdynamic response is characterised by the a priori prescribed hot spot acoustic timescale ratio. Based upon the prescribed timescale ratio, it is shown that the plateau can have either a substantial or negligible impact on the reaction of a surrounding temperature gradient. This is explored further as the slope of the temperature gradient is varied. Based upon the heating-to-acoustic timescale ratio, plateaus of a particular size are shown to facilitate detonation formation inside gradients that would otherwise not detonate.

  5. Weak shock loadings induce potential hot spots formation around an intergranular pore

    NASA Astrophysics Data System (ADS)

    Ma, Xiao; Li, Xinguo; Zheng, Xianxu; Guo, Wencan; Li, Jianling

    2017-03-01

    The weak shock loading plays the leading role in the unexpected explosion accidents of condensed-phase explosives. Under the weak shock loading conditions, the shear localization is the main factor affecting the formation of hot spots. When a planar stress wave crosses over a pore in the polymeric binder of the polymer bonded explosive (called intergranular pore), the shear localization comes out around the pore, which may induce potential hot spots formation in the polymeric binder and cause the chemical reaction of the nearby energetic crystal granules. In the present work, a novel experiment system consisting of time-resolved shadowgraph and laser-driven compressions was used to record the interactions between the planar stress wave and the intergranular pore. Then, a two-dimensional numerical simulation was performed to calculate the shear localization and the temperature rise around the intergranular pore. The simulation results were in good agreement with the experiments. Finally, the locations of the potential hot spots were determined, and the variations of the locations with the impulse width of incident stress wave were discussed.

  6. Hot Spot Electron Temperature from X-Ray Continuum Measurements on the NIF

    NASA Astrophysics Data System (ADS)

    Jarrott, Leonard; Chen, Hui; Izumi, Nobuhiko; Khan, Shahab; Ma, Tammy; Nagel, Sabrina; Pak, Arthur; Patel, Pravesh; Schneider, Marilyn; Scott, Howard

    2015-11-01

    We report on direct measurements of the electron temperature within the hot spot of inertially confined, layered, spherical implosions on the National Ignition Facility using a new differential filtering diagnostic. Measurements of the DT and DD ion temperatures using neutron time-of-flight detectors are complicated by the contribution of hot spot motion to the peak width, which may produce an apparent temperature higher than the thermal temperature. The electron temperature is not sensitive to this non-thermal velocity and is thus a valuable input to interpreting the stagnated hot spot conditions. Here we discuss a new electron temperature measurement using the high energy (>15 keV) emitted continuum from the hotspot that can escape with minimal attenuation from the compressed fuel/shell. We will discuss the physics considerations for design of this new large-pinhole, hard x-ray imaging technique, and show preliminary data acquired from symcaps and DT-layered implosions. Validation of this technique against simulations and other diagnostics is performed to estimate the accuracy of the measurement. This work performed under the auspices of U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.

  7. Hot-spot heating susceptibility due to reverse bias operating conditions

    NASA Technical Reports Server (NTRS)

    Gonzalez, C. C.

    1985-01-01

    Because of field experience (indicating that cell and module degradation could occur as a result of hot spot heating), a laboratory test was developed at JPL to determine hot spot susceptibility of modules. The initial hot spot testing work at JPL formed a foundation for the test development. Test parameters are selected as follows. For high shunt resistance cells, the applied back bias test current is set equal to the test cell current at maximum power. For low shunt resistance cells, the test current is set equal to the cell short circuit current. The shadow level is selected to conform to that which would lead to maximum back bias voltage under the appropriate test current level. The test voltage is determined by the bypass diode frequency. The test conditions are meant to simulate the thermal boundary conditions for 100 mW/sq cm, 40C ambient environment. The test lasts 100 hours. A key assumption made during the development of the test is that no current imbalance results from the connecting of multiparallel cell strings. Therefore, the test as originally developed was applicable for single string case only.

  8. The Canary and Cape Verde hot spots: morphological and geological links

    NASA Astrophysics Data System (ADS)

    Patriat, M.; Olivet, J. L.; Sahabi, M.; Aslanian, D.; Géli, L.

    2003-04-01

    The Canary and Cape-Verde achipelagoes are two groups of volcanic islands, 1400 km apart, located along the African margin of the Central Atlantic Ocean. They are often cited as case examples of the surface expression of two distinct hot-spot plumes. Their distribution, which does not define a line as much oceanic islands of the Pacific Ocean do, but a cluster, is considered as an indication of the steadiness of the African plate in the hot spots reference frame. From a bibliographic review and an examination of existing seismic profiles we emphasize the similarities existing between these two archipelagoes. - A continuous morphological basement ridge does exist along the margin that links the two archipelagoes. - An almost synchronous geological evolution is deduced from the stratigraphy of Fuerteventura island (Canary), Maio island (Cape-Verde), and the few DSDP holes in the area. The stratigraphic record evidences a Late Cretaceous/early Tertiary uplift following the classical oceanic subsidence but pre-dating the Tertiary volcanism that made the islands, or at least their aerial part. These geological arguments induces us to contest the relevance to put two distinct hot spot plumes forward to explain the evolution of such closely related geological structures.

  9. In Situ Hot-Spot Assembly as a General Strategy for Probing Single Biomolecules.

    PubMed

    Liu, Huiqiao; Li, Qiang; Li, Mingmin; Ma, Sisi; Liu, Dingbin

    2017-04-12

    Single-molecule detection using surface-enhanced Raman spectroscopy (SERS) has attracted increasing attention in chemical and biomedical analysis. However, it remains a major challenge to probe single biomolecules by means of SERS hot spots owing to the small volume of hot spots and their random distribution on substrates. We here report an in situ hot-spot assembly method as a general strategy for probing single biomolecules. As a proof-of-concept, this proposed strategy was successfully used for the detection of single microRNA-21 (miRNA-21, a potential cancer biomarker) at the single-cell level, showing great capability in differentiating the expression of miRNA-21 in single cancer cells from normal cells. This approach was further extended to single-protein detection. The versatility of the strategy opens an exciting avenue for single-molecule detection of biomarkers of interest and thus holds great promise in a variety of biological and biomedical applications.

  10. Electron distribution functions and transport in laser-produced hot spots

    NASA Astrophysics Data System (ADS)

    Rozmus, Wojciech; Batishchev, Oleg; Brantov, A. V.; Bychenkov, V. Yu.; Capjack, C. E.; Sydora, R.

    2002-11-01

    The geometry of a laser hot spot is fundamental to the randomized laser beams and several single beam interaction experiments. Localized inverse Bremsstrahlung (IB) heating of the plasma and heat transport away from a hot spot produce nonequilibrium electron distribution functions (EDF) [1,2]. We have performed series of Fokker-Planck (FP) simulations and analytical studies to characterize EDF for a wide range of laser intensities and hot spot sizes. The FP code includes variations on the fast time scale of electromagnetic wave oscillations, self-consistent ambipolar electric field, nonlinear electron-electron and electron-ion collisions. Plasma inhomogeneity is described in one spatial dimension. Nonequilibrium EDF evolve due to competing effects of IB heating which flattens the bulk of the EDF, electron-electron collisions which drive the system towards equilibrium and nonlocal spatial transport which enhances high energy tails in the EDF. We have investigated anisotropy of EDF and threshold conditions for the excitation of return current ion wave instability. [1] S. Brunner and E. Valeo, Phys. Plasmas 9, 923 (2002). [2] O. V. Batishchev, et al. Phys. Plasmas 9, 2302 (2002).

  11. DNA methylation epigenetically silences crossover hot spots and controls chromosomal domains of meiotic recombination in Arabidopsis.

    PubMed

    Yelina, Nataliya E; Lambing, Christophe; Hardcastle, Thomas J; Zhao, Xiaohui; Santos, Bruno; Henderson, Ian R

    2015-10-15

    During meiosis, homologous chromosomes undergo crossover recombination, which is typically concentrated in narrow hot spots that are controlled by genetic and epigenetic information. Arabidopsis chromosomes are highly DNA methylated in the repetitive centromeres, which are also crossover-suppressed. Here we demonstrate that RNA-directed DNA methylation is sufficient to locally silence Arabidopsis euchromatic crossover hot spots and is associated with increased nucleosome density and H3K9me2. However, loss of CG DNA methylation maintenance in met1 triggers epigenetic crossover remodeling at the chromosome scale, with pericentromeric decreases and euchromatic increases in recombination. We used recombination mutants that alter interfering and noninterfering crossover repair pathways (fancm and zip4) to demonstrate that remodeling primarily involves redistribution of interfering crossovers. Using whole-genome bisulfite sequencing, we show that crossover remodeling is driven by loss of CG methylation within the centromeric regions. Using cytogenetics, we profiled meiotic DNA double-strand break (DSB) foci in met1 and found them unchanged relative to wild type. We propose that met1 chromosome structure is altered, causing centromere-proximal DSBs to be inhibited from maturation into interfering crossovers. These data demonstrate that DNA methylation is sufficient to silence crossover hot spots and plays a key role in establishing domains of meiotic recombination along chromosomes.

  12. Hot spot activity and tectonic settings near Amsterdam-St. Paul plateau (Indian Ocean)

    NASA Astrophysics Data System (ADS)

    Janin, M.; HéMond, C.; Guillou, H.; Maia, M.; Johnson, K. T. M.; Bollinger, C.; Liorzou, C.; Mudholkar, A.

    2011-05-01

    The Amsterdam-St. Paul (ASP) plateau is located in the central part of the Indian Ocean and results from the interaction between the ASP hot spot and the Southeast Indian Ridge (SEIR). It is located near the diffuse boundary between the Capricorn and Australian plates. The seamount chain of the Dead Poets (CDP) is northeast of the ASP plateau and may represent older volcanism related to the ASP hot spot; this chain consists of two groups of seamounts: (1) large flat-topped seamounts formed 8-10 Ma and (2) smaller conical seamounts formed during the last 2 Myr. The ASP hot spot has produced two pulses of magmatism that have been ponded under the ASP plateau and erupted along the divergent boundary between the Capricorn and Australian plates. The N65° orientation of the CDP as well as the seamount's elongated shapes support an opening motion between the Capricorn and Australian plates along a suture oriented in the N155° direction. This motion compared to the Antarctic plate amounts to an apparent velocity of 7.7 cm/yr northeastward for the Capricorn-Australian block. This motion does not fit with a fixed plume model. We suggest, therefore, that the ASP plume experienced a motion of about 1-2 cm/yr to the SW, which is opposite to the asthenospheric flow in this region and suggests a deep-seated plume.

  13. Wood ant nests as hot spots of carbon dioxide production and cold spots of methane oxidation in temperate forests

    NASA Astrophysics Data System (ADS)

    Jilkova, Veronika; Picek, Tomas; Cajthaml, Tomas; Frouz, Jan

    2016-04-01

    Wood ant nests are known as hot spots of carbon dioxide (CO2) production and are also thought to affect methane (CH4) flux. Stable high temperatures are maintained in ant nests even in cold environments. Here we focused on quantification of CO2 and CH4 flux in wood ant nests, contribution of ants and microbes to CO2 production, properties of nest material that affect CO2 production and the role of ants and microbes in the maintenance of nest temperature. The research was conducted in temperate and boreal forests inhabited by wood ants (Formica s. str.). Gas fluxes were measured either by an infrared gas analyser or a static chamber technique. Ants and nest materials were also incubated in a laboratory. Material properties potentially influencing CO2 flux, such as moisture, nutrient content or temperature were determined. According to the results, CH4 oxidation was lower in wood ant nests than in the surrounding forest soil suggesting that some characteristics of ant nests hinder CH4 oxidation or promote CH4 production. These characteristics were mainly available carbon and nitrogen contents. Wood ant nests clearly are hot spots of CO2 production in temperate forests originating mainly from ant and also from microbial metabolism. Most important properties positively affecting CO2 production were found to be moisture, nutrient content and temperature. Nest temperature is maintained by ant and microbial metabolism; nests from colder environments produce more metabolic heat to maintain similar temperature as nests from warmer environments. In conclusion, as the abundance of wood ant nests in some forests can be very high, ant nests may largely increase heterogeneity in greenhouse gas fluxes in forest ecosystems.

  14. Magnetotransport of multiple-band nearly antiferromagnetic metals due to hot-spot scattering

    NASA Astrophysics Data System (ADS)

    Koshelev, A. E.

    2016-09-01

    Multiple-band electronic structure and proximity to antiferromagnetic (AF) instability are the key properties of iron-based superconductors. We explore the influence of scattering by the AF spin fluctuations on transport of multiple-band metals above the magnetic transition. A salient feature of scattering on the AF fluctuations is that it is strongly enhanced at the Fermi surface locations where the nesting is perfect ("hot spots" or "hot lines"). We review derivation of the collision integral for the Boltzmann equation due to AF-fluctuations scattering. In the paramagnetic state, the enhanced scattering rate near the hot lines leads to anomalous behavior of electronic transport in magnetic field. We explore this behavior by analytically solving the Boltzmann transport equation with approximate transition rates. This approach accounts for return scattering events and is more accurate than the relaxation-time approximation. The magnetic-field dependences are characterized by two very different field scales: the lower scale is set by the hot-spot width and the higher scale is set by the total scattering amplitude. A conventional magnetotransport behavior is limited to magnetic fields below the lower scale. In the wide range in-between these two scales, the longitudinal conductivity has linear dependence on the magnetic field and the Hall conductivity has quadratic dependence. The linear dependence of the diagonal component reflects growth of the Fermi-surface area affected by the hot spots proportional to the magnetic field. We discuss applicability of this theoretical framework for describing of anomalous magnetotransport properties in different iron pnictides and chalcogenides in the paramagnetic state.

  15. Visualization and detection of spatio-temporal hot-spot and cluster for dengue in Petaling district, Malaysia

    NASA Astrophysics Data System (ADS)

    Rizwan, M.; Dass, Sarat C.; Sagayan, Vijanth

    2016-11-01

    Hot-spot and cluster detection is a part of disease surveillance to find out which regions are effected most by the disease. Analysis of these clusters of disease used for longer periods of time can lead to future prediction of disease outbreaks. Dengue is one of the most important arboviral disease in Malaysia which needs proper surveillance and control strategies. Our current study presents hot-spot and cluster detection of dengue outbreaks in the district of Petaling, Selangor in Malaysia during the year 2014 using the registered cases of dengue in the district. Detected hot-spot from this spatio-temporal analysis of registered dengue could provide a trend for the future dengue outbreak predictions. Use of dengue registered cases for the future prediction could be more effective then using land use variables and climate data. R software is used for the hot-spots detection. Custom clustering definition is considered for the analysis.

  16. Results and analysis of the hot-spot temperature experiment for a cable-in-conduit conductor with thick conduit

    NASA Astrophysics Data System (ADS)

    Sedlak, Kamil; Bruzzone, Pierluigi

    2015-12-01

    In the design of future DEMO fusion reactor a long time constant (∼23 s) is required for an emergency current dump in the toroidal field (TF) coils, e.g. in case of a quench detection. This requirement is driven mainly by imposing a limit on forces on mechanical structures, namely on the vacuum vessel. As a consequence, the superconducting cable-in-conduit conductors (CICC) of the TF coil have to withstand heat dissipation lasting tens of seconds at the section where the quench started. During that time, the heat will be partially absorbed by the (massive) steel conduit and electrical insulation, thus reducing the hot-spot temperature estimated strictly from the enthalpy of the strand bundle. A dedicated experiment has been set up at CRPP to investigate the radial heat propagation and the hot-spot temperature in a CICC with a 10 mm thick steel conduit and a 2 mm thick glass epoxy outer electrical insulation. The medium size, ∅ = 18 mm, NbTi CICC was powered by the operating current of up to 10 kA. The temperature profile was monitored by 10 temperature sensors. The current dump conditions, namely the decay time constant and the quench detection delay, were varied. The experimental results show that the thick conduit significantly contributes to the overall enthalpy balance, and consequently reduces the amount of copper required for the quench protection in superconducting cables for fusion reactors.

  17. Hot spots

    NASA Astrophysics Data System (ADS)

    Government officials in Montserrat and in Nicaragua spent the first week of December trying to usher residents out of their homes and away from simmering volcanoes in each of those nations. Some people cooperated, others decided to take their chances. On the tiny Caribbean island of Montserrat, about 3,500 people were ordered to vacate their homes for the second time in three months, as a lava dome in the Chances Peak volcano grew and threatened to erupt. In Leon, Nicaragua, at least a third of the 12,000 people ordered to evacuate their homes refused, choosing to protect their homes from looters rather than flee the gurgling Cerro Negro. The Nicaraguan volcano spewed ash and lava 900 m into the air on Dec. 2; the eruption was visible from Managua, 120 km to the southeast.

  18. Characterization of hot spots for natural chloroform formation: Relevance for groundwater quality

    NASA Astrophysics Data System (ADS)

    Jacobsen, Ole S.; Albers, Christian N.; Laier, Troels

    2015-04-01

    Chloroform soil hot spot may deteriorate groundwater quality and may even result in chloroform concentration exceeding the Danish maximum limit of 1 µg/L in groundwater for potable use. In order to characterize the soil properties important for the chloroform production, various ecosystems were examined with respect to soil air chloroform and soil organic matter type and content. Coniferous forest areas, responsible for highest chloroform concentrations, were examined on widely different scales from km to cm scale. Furthermore, regular soil gas measurements including chloroform were performed during 4 seasons at various depths, together with various meteorological measurements and soil temperature recordings. Laboratory incubation experiments were also performed on undisturbed soil samples in order to examine the role of various microbiota, fungi and bacteria. To identify hot spots responsible for the natural contamination we have measured the production of chloroform in the upper soil from different terrestrial systems. Field measurements of chloroform in top soil air were used as production indicators. The production was however not evenly distributed at any scale. The ecosystems seem to have quite different net-productions of chloroform from very low in grassland to very high in some coniferous forests. Within the forest ecosystem we found large variation in chloroform concentrations depending on vegetation. In beech forest we found the lowest values, somewhat higher in an open pine forest, but the highest concentrations were detected in spruce forest without any vegetation beneath. Within this ecotype, it appeared that the variation was also large; hot spots with 2-4 decades higher production than the surrounding area. These hot spots were not in any way visually different from the surroundings and were of variable size from 3 to 20 meters in diameter. Besides this, measurements within a seemingly homogenous hot spot showed that there was still high

  19. Fossil hot spot-ridge interaction in the Musicians Seamount Province: Geophysical investigations of hot spot volcanism at volcanic elongated ridges

    NASA Astrophysics Data System (ADS)

    Kopp, H.; Kopp, C.; Phipps Morgan, J.; Flueh, E. R.; Weinrebe, W.; Morgan, W. J.

    2003-03-01

    The Musicians Seamount Province is a group of volcanic elongated ridges (VERs) and single seamounts located north of the Hawaiian Chain. A 327° trending seamount chain defines the western part of the province and has been interpreted as the expression of a Cretaceous hot spot beneath the northward moving Pacific Plate. To the east, elongated E-W striking ridges dominate the morphology. In 1999, wide-angle seismic data were collected across two 400 km long VERs. We present tomographic images of the volcanic edifices, which indicate that crustal thickening occurs in oceanic layer 2 rather than in layer 3. This extrusive style of volcanism appears to strongly contrast with the formation processes of aseismic ridges, where crustal thickening is mostly accommodated by intrusive underplating. High-resolution bathymetry was also collected, which yields a detailed image of the morphology of the VERs. From the occurrence of flat-top guyots and from the unique geomorphologic setting, two independent age constraints for the Pacific crust during the Cretaceous "quiet" zone are obtained, allowing a tectonic reconstruction for the formation of the Musicians VERs. Hot spot-ridge interaction leads to asthenosphere channeling from the plume to the nearby spreading center over a maximum distance of 400 km. The Musicians VERs were formed by mainly extrusive volcanism on top of this melt-generating channel. The proposed formation model may be applicable to a number of observed volcanic ridges in the Pacific, including the Tuamotu Isles, the eastern portion of the Foundation chain, and the western termination of the Salas y Gomez seamount chain.

  20. Large-volume hot spots in gold spiky nanoparticle dimers for high-performance surface-enhanced spectroscopy.

    PubMed

    Li, Anran; Li, Shuzhou

    2014-11-07

    Hot spots with a large electric field enhancement usually come in small volumes, limiting their applications in surface-enhanced spectroscopy. Using a finite-difference time-domain method, we demonstrate that spiky nanoparticle dimers (SNPD) can provide hot spots with both large electric field enhancement and large volumes because of the pronounced lightning rod effect of spiky nanoparticles. We find that the strongest electric fields lie in the gap region when SNPD is in a tip-to-tip (T-T) configuration. The enhancement of electric fields (|E|(2)/|E0|(2)) in T-T SNPD with a 2 nm gap can be as large as 1.21 × 10(6). And the hot spot volume in T-T SNPD is almost 7 times and 5 times larger than those in the spike dimer and sphere dimer with the same gap size of 2 nm, respectively. The hot spot volume in SNPD can be further improved by manipulating the arrangements of spiky nanoparticles, where crossed T-T SNPD provides the largest hot spot volume, which is 1.5 times that of T-T SNPD. Our results provide a strategy to obtain hot spots with both intense electric fields and large volume by adding a bulky core at one end of the spindly building block in dimers.

  1. Water, ammonia, and H 2S mixing ratios in Jupiter's five-micron hot spots: A dynamical model

    NASA Astrophysics Data System (ADS)

    Friedson, A. James

    2005-09-01

    The Galileo probe entered the jovian atmosphere at the southern edge of a 5-micron hot spot, one of typically 8-10 quasi-evenly-spaced longitudinal areas of anomalously high 5-micron IR emission that reside in a narrow latitude band centered on +7.5 degrees. These hot spots are characterized primarily by a low abundance of the cloud particles that dominate the 5-micron opacity at other locations on the planet, and by significant desiccation of ammonia, water and hydrogen sulfide in the upper layers of the troposphere. Ortiz et al. [1998. Evolution and persistence of 5-micron hot spots at the Galileo probe entry latitude. J. Geophys. Res. 103, 23,051-23,069] found that the latitude and drift rate of the hot spots could be explained if they are formed by an equatorially trapped Rossby wave of meridional degree 1 moving with a phase speed between 99 and 103 m s -1 relative to System III. Here we model additional properties of the hot spots in terms of the amplitude saturation of such a wave propagating in the weakly stratified deep troposphere. We identify the hot spots with locations where the wave plus mean thermal stratification becomes marginally stable. In these locations, potential temperature isotherms stretch downward to very deep levels in the troposphere. Since fluid parcels follow these isotherms under adiabatic flow conditions, the parcels dive downward when they enter the portion of the wave associated with the hot spot and soar upward upon leaving the spot. We show that this model can account for the anomalous vertical profiles of NH 3, H 2O, and H 2S mixing ratio measured by the Galileo probe. Pressures vary by as much as 20 bar over potential temperature isotherms in solutions that produce sufficient desiccation of water and H 2S in hot spots. Approximately 6×10 of Jupiter's internal heat flux must be tapped to maintain the wave over the mean hot spot lifetime of 10 7 s. The results suggest that the phenomenon that causes hot spots may occur widely

  2. The Effect of Particle Properties on Hot Particle Spot Fire Ignition

    NASA Astrophysics Data System (ADS)

    Zak, Casey David

    The ignition of natural combustible material by hot metal particles is an important fire ignition pathway by which wildland and wildland-urban-interface spot fires are started. There are numerous cases reported of wild fires started by clashing power-lines or from sparks generated by machines or engines. Similarly there are many cases reported of fires caused by grinding, welding and cutting sparks. Up to this point, research on hot particle spot fire ignition has largely focused on particle generation and transport. A small number of studies have examined what occurs after a hot particle contacts a natural fuel bed, but until recently the process remained poorly understood. This work describes an investigation of the effect of particle size, temperature and thermal properties on the ability of hot particles to cause flaming ignition of cellulosic fuel beds. Both experimental and theoretical approaches are used, with a focus on understanding the physics underlying the ignition process. For the experimental study, spheres of stainless steel, aluminum, brass and copper are heated in a tube furnace and dropped onto a powdered cellulose fuel bed; the occurrence of flaming ignition or lack thereof is visually observed and recorded. This procedure is repeated a large number of times for each metal type, varying particle diameter from 2 to 11 mm and particle temperature between 575 and 1100°C. The results of these experiments are statistically analyzed to find approximate ignition boundaries and identify boundary trends with respect to the particle parameters of interest. Schlieren images recorded during the ignition experiments are also used to more accurately describe the ignition process. Based on these images, a simple theoretical model of hot particle spot fire ignition is developed and used to explore the experimental trends further. The model under-predicts the minimum ignition temperatures required for small spheres, but agrees qualitatively with the experimental

  3. Identification of environmental anomaly hot spots in West Africa from time series of NDVI and rainfall

    NASA Astrophysics Data System (ADS)

    Boschetti, Mirco; Nutini, Francesco; Brivio, Pietro Alessandro; Bartholomé, Etienne; Stroppiana, Daniela; Hoscilo, Agata

    2013-04-01

    Studies of the impact of human activity on vegetation dynamics of the Sahelian belt of Africa have been recently re-invigorated by new scientific findings that highlighted the primary role of climate in the drought crises of the 1970s-1980s. Time series of satellite observations revealed a re-greening of the Sahelian belt that indicates no noteworthy human effect on vegetation dynamics at sub continental scale from the 1980s to late 1990s. However, several regional/local crises related to natural resources occurred in the last decades despite the re-greening thus underlying that more detailed studies are needed. In this study we used time-series (1998-2010) of SPOT-VGT NDVI and FEWS-RFE rainfall estimates to analyse vegetation - rainfall correlation and to map areas of local environmental anomalies where significant vegetation variations (increase/decrease) are not fully explained by seasonal changes of rainfall. Some of these anomalous zones (hot spots) were further analysed with higher resolution images Landsat TM/ETM+ to evaluate the reliability of the identified anomalous behaviour and to provide an interpretation of some example hot spots. The frequency distribution of the hot spots among the land cover classes of the GlobCover map shows that increase in vegetation greenness is mainly located in the more humid southern part and close to inland water bodies where it is likely to be related to the expansion/intensification of irrigated agricultural activities. On the contrary, a decrease in vegetation greenness occurs mainly in the northern part (12°-15°N) in correspondence with herbaceous vegetation covers where pastoral and cropping practices are often critical due to low and very unpredictable rainfall. The results of this study show that even if a general positive re-greening due to increased rainfall is evident for the entire Sahel, some local anomalous hot spots exist and can be explained by human factors such as population growth whose level reaches the

  4. Effects of basal-plane thermal conductivity and interface thermal conductance on the hot spot temperature in graphene electronic devices

    NASA Astrophysics Data System (ADS)

    Choi, David; Poudel, Nirakar; Cronin, Stephen B.; Shi, Li

    2017-02-01

    Electrostatic force microscopy and scanning thermal microscopy are employed to investigate the electric transport and localized heating around defects introduced during transfer of graphene grown by chemical vapor deposition to an oxidized Si substrate. Numerical and analytical models are developed to explain the results based on the reported basal-plane thermal conductivity, κ, and interfacial thermal conductance, G, of graphene and to investigate their effects on the peak temperature. Irrespective of the κ values, increasing G beyond 4 × 107 W m-2 K-1 can reduce the peak temperature effectively for graphene devices made on sub-10 nm thick gate dielectric, but not for the measured device made on 300-nm-thick oxide dielectric, which yields a cross-plane thermal conductance (Gox) much smaller than the typical G of graphene. In contrast, for typical G values reported for graphene, increasing κ from 300 W m-1 K-1 toward 3000 W m-1 K-1 is effective in reducing the hot spot temperature for the 300-nm-thick oxide devices but not for the sub-10 nm gate dielectric case, because the heat spreading length (l) can be appreciably increased relative to the micron-scale localized heat generation spot size (r0) only when the oxide layer is sufficiently thick. As such, enhancement of κ increases the vertical heat transfer area above the gate dielectric only for the thick oxide case. In all cases considered, the hot spot temperature is sensitive to varying G and κ only when the G/Gox ratio and r0/l ratio are below about 5, respectively.

  5. Environmental health risk assessment of dioxin exposure through foods in a dioxin hot spot-Bien Hoa City, Vietnam.

    PubMed

    Tuyet-Hanh, Tran Thi; Vu-Anh, Le; Ngoc-Bich, Nguyen; Tenkate, Thomas

    2010-05-01

    This study used the Australian Environmental Health Risk Assessment Framework to assess the human health risk of dioxin exposure through foods for local residents in two wards of Bien Hoa City, Vietnam. These wards are known hot-spots for dioxin and a range of stakeholders from central government to local levels were involved in this process. Publications on dioxin characteristics and toxicity were reviewed and dioxin concentrations in local soil, mud, foods, milk and blood samples were used as data for this risk assessment. A food frequency survey of 400 randomly selected households in these wards was conducted to provide data for exposure assessment. Results showed that local residents who had consumed locally cultivated foods, especially fresh water fish and bottom-feeding fish, free-ranging chicken, duck, and beef were at a very high risk, with their daily dioxin intake far exceeding the tolerable daily intake recommended by the WHO. Based on the results of this assessment, a multifaceted risk management program was developed and has been recognized as the first public health program ever to have been implemented in Vietnam to reduce the risks of dioxin exposure at dioxin hot-spots.

  6. Friction Stir Spot Welding of DP780 and Hot-Stamp Boron Steels

    SciTech Connect

    Santella, Michael L.; Frederick, Alan; Hovanski, Yuri; Grant, Glenn J.

    2008-05-16

    Friction stir spot welds were made in two high-strength steels: DP780, and a hot-stamp-boron steel with tensile strength of 1500 MPa. The spot welds were made at either 800 or 1600 rpm using either of two polycrystalline boron nitride tools. One stir tool, BN77, had the relatively common pin-tool shape. The second tool, BN46, had a convex rather than a concave shoulder profile and a much wider and shorter pin. The tools were plunged to preprogrammed depths either at a continuous rate (1-step schedule) or in two segments consisting of a relatively high rate followed by a slower rate. In all cases, the welds were completed in 4s. The range of lap-shear values were compared to values required for resistance spot welds on the same steels. The minimum value of 10.3 kN was exceeded for friction stir spot welding of DP780 using a 2-step schedule and either the BN77- or the BN46-type stir tool. The respective minimum value of 12 kN was also exceeded for the HSB steel using the 2-step process and the BN46 stir tool.

  7. Anticorrelation of Photoluminescence from Gold Nanoparticle Dimers with Hot-Spot Intensity

    PubMed Central

    2016-01-01

    Bulk gold shows photoluminescence (PL) with a negligible quantum yield of ∼10–10, which can be increased by orders of magnitude in the case of gold nanoparticles. This bears huge potential to use noble metal nanoparticles as fluorescent and unbleachable stains in bioimaging or for optical data storage. Commonly, the enhancement of the PL yield is attributed to nanoparticle plasmons, specifically to the enhancements of scattering or absorption cross sections. Tuning the shape or geometry of gold nanostructures (e.g., via reducing the distance between two nanoparticles) allows for redshifting both the scattering and the PL spectra. However, while the scattering cross section increases with a plasmonic redshift, the PL yield decreases, indicating that the common simple picture of a plasmonically boosted gold luminescence needs more detailed consideration. In particular, precise experiments as well as numerical simulations are required. Hence, we systematically varied the distance between the tips of two gold bipyramids on the nanometer scale using AFM manipulation and recorded the PL and the scattering spectra for each separation. We find that the PL intensity decreases as the interparticle coupling increases. This anticorrelation is explained by a theoretical model where both the gold-intrinsic d-band hole recombination probabilities as well as the field strength inside the nanostructure are considered. The scattering cross section or the field strength in the hot-spot between the tips of the bipyramids are not relevant for the PL intensity. Besides, we not only observe PL supported by dipolar plasmon resonances, but also measure and simulate PL supported by higher order plasmonic modes. PMID:27700125

  8. Using spatial statistics to identify emerging hot spots of forest loss

    NASA Astrophysics Data System (ADS)

    Harris, Nancy L.; Goldman, Elizabeth; Gabris, Christopher; Nordling, Jon; Minnemeyer, Susan; Ansari, Stephen; Lippmann, Michael; Bennett, Lauren; Raad, Mansour; Hansen, Matthew; Potapov, Peter

    2017-02-01

    As sources of data for global forest monitoring grow larger, more complex and numerous, data analysis and interpretation become critical bottlenecks for effectively using them to inform land use policy discussions. Here in this paper, we present a method that combines big data analytical tools with Emerging Hot Spot Analysis (ArcGIS) to identify statistically significant spatiotemporal trends of forest loss in Brazil, Indonesia and the Democratic Republic of Congo (DRC) between 2000 and 2014. Results indicate that while the overall rate of forest loss in Brazil declined over the 14-year time period, spatiotemporal patterns of loss shifted, with forest loss significantly diminishing within the Amazonian states of Mato Grosso and Rondônia and intensifying within the cerrado biome. In Indonesia, forest loss intensified in Riau province in Sumatra and in Sukamara and West Kotawaringin regencies in Central Kalimantan. Substantial portions of West Kalimantan became new and statistically significant hot spots of forest loss in the years 2013 and 2014. Similarly, vast areas of DRC emerged as significant new hot spots of forest loss, with intensified loss radiating out from city centers such as Beni and Kisangani. While our results focus on identifying significant trends at the national scale, we also demonstrate the scalability of our approach to smaller or larger regions depending on the area of interest and specific research question involved. When combined with other contextual information, these statistical data models can help isolate the most significant clusters of loss occurring over dynamic forest landscapes and provide more coherent guidance for the allocation of resources for forest monitoring and enforcement efforts.

  9. Multiple modes of chromatin configuration at natural meiotic recombination hot spots in fission yeast.

    PubMed

    Hirota, Kouji; Steiner, Walter W; Shibata, Takehiko; Ohta, Kunihiro

    2007-11-01

    The ade6-M26 meiotic recombination hot spot of fission yeast is defined by a cyclic AMP-responsive element (CRE)-like heptanucleotide sequence, 5'-ATGACGT-3', which acts as a binding site for the Atf1/Pcr1 heterodimeric transcription factor required for hot spot activation. We previously demonstrated that the local chromatin around the M26 sequence motif alters to exhibit higher sensitivity to micrococcal nuclease before the initiation of meiotic recombination. In this study, we have examined whether or not such alterations in chromatin occur at natural meiotic DNA double-strand break (DSB) sites in Schizosaccharomyces pombe. At one of the most prominent DSB sites, mbs1 (meiotic break site 1), the chromatin structure has a constitutively accessible configuration at or near the DSB sites. The establishment of the open chromatin state and DSB formation are independent of the CRE-binding transcription factor, Atf1. Analysis of the chromatin configuration at CRE-dependent DSB sites revealed both differences from and similarities to mbs1. For example, the tdh1+ locus, which harbors a CRE consensus sequence near the DSB site, shows a meiotically induced open chromatin configuration, similar to ade6-M26. In contrast, the cds1+ locus is similar to mbs1 in that it exhibits a constitutive open configuration. Importantly, Atf1 is required for the open chromatin formation in both tdh1+ and cds1+. These results suggest that CRE-dependent meiotic chromatin changes are intrinsic processes related to DSB formation in fission yeast meiosis. In addition, the results suggest that the chromatin configuration in natural meiotic recombination hot spots can be classified into at least three distinct categories: (i) an Atf1-CRE-independent constitutively open chromatin configuration, (ii) an Atf1-CRE-dependent meiotically induced open chromatin configuration, and (iii) an Atf1-CRE-dependent constitutively open chromatin configuration.

  10. Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem.

    PubMed

    Gurcan, Metin N; Tomaszewski, John; Overton, James A; Doyle, Scott; Ruttenberg, Alan; Smith, Barry

    2017-02-01

    Interoperability across data sets is a key challenge for quantitative histopathological imaging. There is a need for an ontology that can support effective merging of pathological image data with associated clinical and demographic data. To foster organized, cross-disciplinary, information-driven collaborations in the pathological imaging field, we propose to develop an ontology to represent imaging data and methods used in pathological imaging and analysis, and call it Quantitative Histopathological Imaging Ontology - QHIO. We apply QHIO to breast cancer hot-spot detection with the goal of enhancing reliability of detection by promoting the sharing of data between image analysts.

  11. Self-consistent analysis of the hot spot dynamics for inertial confinement fusion capsules

    SciTech Connect

    Sanz, J.; Garnier, J.; Cherfils, C.; Canaud, B.; Masse, L.; Temporal, M.

    2005-11-15

    In the context of the French Laser-Megajoule fusion-research program, the hydrodynamic stability of the baseline direct-drive target is investigated at the hot spot surface during the deceleration phase by means of modeling and simulations. Using the convergence of the flow towards a self-similar solution, a closed system of ordinary differential equations is derived for the main hydrodynamic variables. An exact linear stability analysis is performed to compute the Rayleigh-Taylor growths. All theoretical predictions are compared to one-dimensional and two-dimensional single-mode detailed numerical results.

  12. Hot spot abundance, ridge subduction and the evolution of greenstone belts

    NASA Technical Reports Server (NTRS)

    Abbott, D.; Hoffman, S.

    1986-01-01

    A number of plate tectonic hypotheses have been proposed to explain the origin of Archaean and Phanerozoic greenstone/ophiolite terranes. In these models, ophiolites or greenstone belts represent the remnants of one or more of the following: island arcs, rifted continental margins, oceanic crustal sections, and hot spot volcanic products. If plate tectonics has been active since the creation of the Earth, it is logical to suppose that the same types of tectonic processes which form present day ophiolites also formed Archaean greenstone belts. However, the relative importance of the various tectonic processes may well have been different and are discussed.

  13. Detection of spatial hot spots and variation for the neon flying squid Ommastrephes bartramii resources in the northwest Pacific Ocean

    NASA Astrophysics Data System (ADS)

    Feng, Yongjiu; Chen, Xinjun; Liu, Yan

    2016-08-01

    With the increasing effects of global climate change and fishing activities, the spatial distribution of the neon flying squid (Ommastrephes bartramii) is changing in the traditional fishing ground of 150°-160°E and 38°-45°N in the northwest Pacific Ocean. This research aims to identify the spatial hot and cold spots (i.e. spatial clusters) of O. bartramii to reveal its spatial structure using commercial fishery data from 2007 to 2010 collected by Chinese mainland squid-jigging fleets. A relatively strongly-clustered distribution for O. bartramii was observed using an exploratory spatial data analysis (ESDA) method. The results show two hot spots and one cold spot in 2007 while only one hot and one cold spots were identified each year from 2008 to 2010. The hot and cold spots in 2007 occupied 8.2% and 5.6% of the study area, respectively; these percentages for hot and cold spot areas were 5.8% and 3.1% in 2008, 10.2% and 2.9% in 2009, and 16.4% and 11.9% in 2010, respectively. Nearly half (>45%) of the squid from 2007 to 2009 reported by Chinese fleets were caught in hot spot areas while this percentage reached its peak at 68.8% in 2010, indicating that the hot spot areas are central fishing grounds. A further change analysis shows the area centered at 156°E/43.5°N was persistent as a hot spot over the whole period from 2007 to 2010. Furthermore, the hot spots were mainly identified in areas with sea surface temperature (SST) in the range of 15-20°C around warm Kuroshio Currents as well as with the chlorophyll-a (chl-a) concentration above 0.3 mg/m3. The outcome of this research improves our understanding of spatiotemporal hotspots and its variation for O. bartramii and is useful for sustainable exploitation, assessment, and management of this squid.

  14. Effect of width, amplitude and position of a CMB hot spot on core convection and dynamo action

    NASA Astrophysics Data System (ADS)

    Dietrich, W.; Wicht, J.; Hori, K.

    2015-10-01

    Within the fluid iron cores of terrestrial planets, convection and hence the generation of global magnetic fields are controlled by the overlying rocky mantle. The thermal structure of the lower mantle determines how much heat is allowed to escape the core. Hot lower mantle features, like the thermal footprint of a giant impact or hot mantle plumes will reduce locally the heat flux through the core mantle boundary (CMB) and thereby weaken core convection and affect the magnetic field generation process. In this study, we numerically investigate how parametrised hot spots at the CMB with arbitrary size, amplitude and position affect core convection and hence the dynamo. The effect of the heat flux anomaly is quantified by changes in global flow symmetry properties, such as the emergence of equatorial antisymmetric and axisymmetric (EAA) zonal flows. For pure hydrodynamic models the EAA symmetry scales almost linearly with its respective amplitude and size, whereas self-consistent dynamo simulations typically either suppress or drastically enhance EAA depending mainly on the length scale of the heat flux anomaly. Our results suggest, that the horizontal extent of the anomaly should be on the order of the outer core radius to significantly affect flow and field symmetries. As an implication to Mars, the study concludes that an ancient core field modified by a CMB heat flux anomaly is not able to heteroge- neously magnetise the crust to the present-day level of north-south asymmetry.

  15. The radio sources CTA 21 and OF+247: The hot spots of radio galaxies

    NASA Astrophysics Data System (ADS)

    Artyukh, V. S.; Tyul'bashev, S. A.; Chernikov, P. A.

    2013-06-01

    The physical conditions in the radio sources CTA 21 and OF+247 are studied assuming that the low-frequency spectral turnovers are due to synchrotron self-absorption. The physical parameters of the radio sources are estimated using a technique based on a nonuniform synchrotron source model. It is shown that the magnetic-field distributions in the dominant compact components of these radio sources are strongly inhomogeneous. The magnetic fields at the center of the sources are B ˜ 10-1 G, and the fields are two to three orders of magnitude weaker at the periphery. The magnetic field averaged over the compact component is B ˜ 10-3 G, and the density of relativistic electrons is n e ˜ 10-3 cm-3. Assuming that there is equipartition of the energies of the magnetic field and relativistic particles, averaged over the source, < E H > = < E e > ˜ 10-7-10-6 erg cm-3. The energy density of the magnetic field exceeds that of the relativistic electrons at the centers of the radio sources. The derived parameters of CTA 21 and OF+247 are close to those of the hot spots in the radio galaxy Cygnus A. On this basis, it is suggested that CTA 21 and OF+247 are radio galaxies at an early stage of their evolution, when the hot spots (dominant compact radio components) have appeared, and the radio lobes (weak extended components) are still being formed.

  16. Surface plasmon delocalization in silver nanoparticle aggregates revealed by subdiffraction supercontinuum hot spots

    PubMed Central

    Borys, Nicholas J.; Shafran, Eyal; Lupton, John M.

    2013-01-01

    The plasmonic resonances of nanostructured silver films produce exceptional surface enhancement, enabling reproducible single-molecule Raman scattering measurements. Supporting a broad range of plasmonic resonances, these disordered systems are difficult to investigate with conventional far-field spectroscopy. Here, we use nonlinear excitation spectroscopy and polarization anisotropy of single optical hot spots of supercontinuum generation to track the transformation of these plasmon modes as the mesoscopic structure is tuned from a film of discrete nanoparticles to a semicontinuous layer of aggregated particles. We demonstrate how hot spot formation from diffractively-coupled nanoparticles with broad spectral resonances transitions to that from spatially delocalized surface plasmon excitations, exhibiting multiple excitation resonances as narrow as 13 meV. Photon-localization microscopy reveals that the delocalized plasmons are capable of focusing multiple narrow radiation bands over a broadband range to the same spatial region within 6 nm, underscoring the existence of novel plasmonic nanoresonators embedded in highly disordered systems. PMID:23807624

  17. Wood ant nests as hot spots of microbial activity in forest ecosystems

    NASA Astrophysics Data System (ADS)

    Jilkova, Veronika; Frouz, Jan

    2015-04-01

    Wood ants build large and long-lasting nests from organic materials and mineral soil which have a very special structure. Nests are well-aerated due to numerous chambers and galleries and stable temperature and moisture are maintained there thanks to ant activities. These conditions together with the constant input of easily available nutrients from food of ants support microbial activity. Due to respiration of ants and microbes, wood ant nests are known as hot spots of CO2 production in forest ecosystems. Although the main source of CO2 is represented by ant respiration, a significant amount of CO2 originates also from microbial decomposition of organic materials. Several conditions affect microbial respiration, such as moisture of nest material, changes in temperatures or food input. As mineral nutrients are released from organic materials, wood ant nests represent hot spots of mineral nutrients in forest ecosystems which can be exploited by other organisms, such as roots of trees, and can also cause heterogeneity in species abundance and composition.

  18. Self-assembled large Au nanoparticle arrays with regular hot spots for SERS.

    SciTech Connect

    Chen, A.; DePrince III, A. E.; Demortiere, A.; Joshi-Imre, A.; Shevchenko, E. V.; Gray, S.K.; Welp, U.; Vlasko-Vlasov, V. K.

    2011-08-22

    The cost-effective self-assembly of 80 nm Au nanoparticles (NPs) into large-domain, hexagonally close-packed arrays for high-sensitivity and high-fidelity surface-enhanced Raman spectroscopy (SERS) is demonstrated. These arrays exhibit specific optical resonances due to strong interparticle coupling, which are well reproduced by finite-difference time-domain (FDTD) simulations. The gaps between NPs form a regular lattice of hot spots that enable a large amplification of both photoluminescence and Raman signals. At smaller wavelengths the hot spots are extended away from the minimum-gap positions, which allows SERS of larger analytes that do not fit into small gaps. Using CdSe quantum dots (QDs) a 3-5 times larger photoluminescence enhancement than previously reported is experimentally demonstrated and an unambiguous estimate of the electromagnetic SERS enhancement factor of {approx}10{sup 4} is obtained by direct scanning electron microscopy imaging of QDs responsible for the Raman signal. Much stronger enhancement of {approx}10{sup 8} is obtained at larger wavelengths for benzenethiol molecules penetrating the NP gaps.

  19. Magnetohydrodynamic solution for a Z pinch showing the production of a hot spot

    SciTech Connect

    Maxon, S.; Hammer, J.H.; Eddleman, J.L.; Tabak, M.; Zimmerman, G.B.; Alley, W.E.; Estabrook, K.G.; Harte, J.A.; Nash, T.J.; Sanford, T.W.; De Groot, J.S.

    1996-05-01

    Two-dimensional LASNEX [National Technical Information Service Document No. DE 81026329 (Zimmerman, Report No. UCRL-74811, 1973)] calculations are made for a Z pinch on Saturn, the low-impedance, low-inductance electron accelerator at the Sandia National Laboratories [D. D. Bloomquist {ital et} {ital al}. {ital Proceedings} {ital of} {ital the} {ital Sixth} {ital IEEE} {ital Pulsed} {ital Power} {ital Conference}, Arlington, VA, edited by P. J. Turchi and B. H. Bernstein (Institute of Electronics and Electrical Engineers, New York, 1987), p. 310]. The experiment is characterized by a current of 6 MA with a tungsten wire load (4 mg) at 2 mm. Two-dimensional calculations show the evolution of the Rayleigh{endash}Taylor instability to the bubble and spike phase, causing high-density islands to form in the pinch opposite the bubbles. The two-dimensional energy flow causes a {open_quote}{open_quote}hot spot{close_quote}{close_quote} to evolve, which is shown to agree in its size and brightness with pinhole camera measurements. This is the first explicit calculation of a hot spot in two dimensions employing the full magnetohydrodynamic equations. {copyright} {ital 1996 American Institute of Physics.}

  20. Cortical hot spots and labyrinths: why cortical neuromodulation for episodic migraine with aura should be personalized.

    PubMed

    Dahlem, Markus A; Schmidt, Bernd; Bojak, Ingo; Boie, Sebastian; Kneer, Frederike; Hadjikhani, Nouchine; Kurths, Jürgen

    2015-01-01

    Stimulation protocols for medical devices should be rationally designed. For episodic migraine with aura we outline model-based design strategies toward preventive and acute therapies using stereotactic cortical neuromodulation. To this end, we regard a localized spreading depression (SD) wave segment as a central element in migraine pathophysiology. To describe nucleation and propagation features of the SD wave segment, we define the new concepts of cortical hot spots and labyrinths, respectively. In particular, we firstly focus exclusively on curvature-induced dynamical properties by studying a generic reaction-diffusion model of SD on the folded cortical surface. This surface is described with increasing level of details, including finally personalized simulations using patient's magnetic resonance imaging (MRI) scanner readings. At this stage, the only relevant factor that can modulate nucleation and propagation paths is the Gaussian curvature, which has the advantage of being rather readily accessible by MRI. We conclude with discussing further anatomical factors, such as areal, laminar, and cellular heterogeneity, that in addition to and in relation to Gaussian curvature determine the generalized concept of cortical hot spots and labyrinths as target structures for neuromodulation. Our numerical simulations suggest that these target structures are like fingerprints, they are individual features of each migraine sufferer. The goal in the future will be to provide individualized neural tissue simulations. These simulations should predict the clinical data and therefore can also serve as a test bed for exploring stereotactic cortical neuromodulation.

  1. Confining hot spots in 3C 196 - Implications for QSO-companion galaxies

    NASA Technical Reports Server (NTRS)

    Brown, R. L.; Broderick, J. J.; Mitchell, K. J.

    1986-01-01

    VLBI observations of the extremely compact hot spot in the northern radio lobe of the QSO 3C 196 reveal the angular size of its smallest substructure to be 0.065 arcsec x 0.045 arcsec or about 300 pc at the redshift distance. The morphology of the hot spot and its orientation relative to the more diffuse radio emission suggest that it is formed by an oblique interaction between the nuclear QSO jet and circum-QSO cloud. The inferred density in this cloud, together with its apparent size, imply that the cloud contains a galactic mass, greater than a billion solar masses of gas. The effect of the jet will be to hasten gravitational collapse of the cloud. If many QSOs such as 3C 196 are formed or found in gas-rich environments, the QSO radio phase may commonly stimulate the metamorphosis of circum-QSO gas to QSO-companion galaxies or it may play a significant part in catalyzing star formation in existing companions.

  2. Confining hot spots in 3C 196 - implications for QSO-companion galaxies

    SciTech Connect

    Brown, R.L.; Broderick, J.J.; Mitchell, K.J.

    1986-07-01

    VLBI observations of the extremely compact hot spot in the northern radio lobe of the QSO 3C 196 reveal the angular size of its smallest substructure to be 0.065 arcsec x 0.045 arcsec or about 300 pc at the redshift distance. The morphology of the hot spot and its orientation relative to the more diffuse radio emission suggest that it is formed by an oblique interaction between the nuclear QSO jet and circum-QSO cloud. The inferred density in this cloud, together with its apparent size, imply that the cloud contains a galactic mass, greater than a billion solar masses of gas. The effect of the jet will be to hasten gravitational collapse of the cloud. If many QSOs such as 3C 196 are formed or found in gas-rich environments, the QSO radio phase may commonly stimulate the metamorphosis of circum-QSO gas to QSO-companion galaxies or it may play a significant part in catalyzing star formation in existing companions. 30 references.

  3. Biofilm models for the food industry: hot spots for plasmid transfer?

    PubMed

    Van Meervenne, Eva; De Weirdt, Rosemarie; Van Coillie, Els; Devlieghere, Frank; Herman, Lieve; Boon, Nico

    2014-04-01

    Biofilms represent a substantial problem in the food industry, with food spoilage, equipment failure, and public health aspects to consider. Besides, biofilms may be a hot spot for plasmid transfer, by which antibiotic resistance can be disseminated to potential foodborne pathogens. This study investigated biomass and plasmid transfer in dual-species (Pseudomonas putida and Escherichia coli) biofilm models relevant to the food industry. Two different configurations (flow-through and drip-flow) and two different inoculation procedures (donor-recipient and recipient-donor) were tested. The drip-flow configuration integrated stainless steel coupons in the setup while the flow-through configuration included a glass flow cell and silicone tubing. The highest biomass density [10 log (cells cm-²)] was obtained in the silicone tubing when first the recipient strain was inoculated. High plasmid transfer ratios, up to 1/10 (transconjugants/total bacteria), were found. Depending on the order of inoculation, a difference in transfer efficiency between the biofilm models could be found. The ease by which the multiresistance plasmid was transferred highlights the importance of biofilms in the food industry as hot spots for the acquisition of multiresistance plasmids. This can impede the treatment of foodborne illnesses if pathogens acquire this multiresistance in or from the biofilm.

  4. Deep-sea hydrothermal vents: potential hot spots for natural products discovery?

    PubMed

    Thornburg, Christopher C; Zabriskie, T Mark; McPhail, Kerry L

    2010-03-26

    Deep-sea hydrothermal vents are among the most extreme and dynamic environments on Earth. However, islands of highly dense and biologically diverse communities exist in the immediate vicinity of hydrothermal vent flows, in stark contrast to the surrounding bare seafloor. These communities comprise organisms with distinct metabolisms based on chemosynthesis and growth rates comparable to those from shallow water tropical environments, which have been rich sources of biologically active natural products. The geological setting and geochemical nature of deep-sea vents that impact the biogeography of vent organisms, chemosynthesis, and the known biological and metabolic diversity of Eukarya, Bacteria, and Archaea, including the handful of natural products isolated to date from deep-sea vent organisms, are considered here in an assessment of deep-sea hydrothermal vents as potential hot spots for natural products investigations. Of critical importance too are the logistics of collecting deep vent organisms, opportunities for re-collection considering the stability and longevity of vent sites, and the ability to culture natural product-producing deep vent organisms in the laboratory. New cost-effective technologies in deep-sea research and more advanced molecular techniques aimed at screening a more inclusive genetic assembly are poised to accelerate natural product discoveries from these microbial diversity hot spots.

  5. A conserved TLR5 binding and activation hot spot on flagellin

    PubMed Central

    Song, Wan Seok; Jeon, Ye Ji; Namgung, Byeol; Hong, Minsun; Yoon, Sung-il

    2017-01-01

    Flagellin is a bacterial protein that polymerizes into the flagellar filament and is essential for bacterial motility. When flagellated bacteria invade the host, flagellin is recognized by Toll-like receptor 5 (TLR5) as a pathogen invasion signal and eventually evokes the innate immune response. Here, we provide a conserved structural mechanism by which flagellins from Gram-negative γ-proteobacteria and Gram-positive Firmicutes bacteria bind and activate TLR5. The comparative structural analysis using our crystal structure of a complex between Bacillus subtilis flagellin (bsflagellin) and TLR5 at 2.1 Å resolution, combined with the alanine scanning analysis of the binding interface, reveals a common hot spot in flagellin for TLR5 activation. An arginine residue (bsflagellin R89) of the flagellin D1 domain and its adjacent residues (bsflagellin E114 and L93) constitute a hot spot that provides shape and chemical complementarity to a cavity generated by the loop of leucine-rich repeat 9 in TLR5. In addition to the flagellin D1 domain, the D0 domain also contributes to TLR5 activity through structurally dispersed regions, but not a single focal area. These results establish the groundwork for the future design of flagellin-based therapeutics. PMID:28106112

  6. Non-local Lateral electron heat transport from one or more hot spots.

    NASA Astrophysics Data System (ADS)

    Matte, Jean-Pierre; Alouani-Bibi, Fathallah

    2000-10-01

    Fokker-Planck simulations of collisional absorption and transport in long scale length, preformed, underdense plasmas heated by intense and narrow laser hot spots, as in certain recent LANL experiments [1], are presented. The temperature profiles compared with those obtained from flux limited or delocalized heat flow models. For the former, the temperature peaks can be matched only if a very low flux limiter is used, and even then, the scale length of the temperature profile is always overestimated. The electron distribution function will be characterized, and compared to the "DLM" shape, exp(-(v/u)^m), [2] and the best fit for m will be compared to older formulas for uniform plasmas [2]. Hydrodynamic effects are also addressed with simulations which include ion motion; both with and without the ponderomotive force. The enhancement of sound velocity due to the "DLM" shape [3] inside the hot spot will be quantified. [1] J.A. Cobble et al., Phys. Plasmas, 7, 323 (2000) [2] J.P. Matte et al., Plasma Phys. and Contr. Fusion, 30, 1665, (1988) [3] B. B. Afeyan et al., PRL 81, 2322 (1998).

  7. Hot-spot tectonics of Eistla Regio, Venus: Results from Magellan images and Pioneer Venus gravity

    NASA Astrophysics Data System (ADS)

    Grimm, Robert E.; Phillips, Roger J.

    1991-06-01

    Eistla Regio (ER) is a broad, low, discontinuous topographic rise striking roughly EW at low northern latitudes of Venus. Some 2000 x 7000 km in dimensions, it is the third largest rise in planform on Venus after Aphrodite Terra and Beta Phoebe Regiones. These rises are the key physiographic elements in a hot spot model of global tectonics including transient plume behavior. Since ER is the first such rise viewed by Magellan and the latitude is very favorable for Pioneer Venus gravity studies, some of the predictions of a time dependent hot spot model are tested. Western ER is defined as the rise including Gula and Sif Mons and central ER as that including Sappho Patera. Superior conjunction prevented Magellan from returning data on eastern ER (Pavlova) during the first mapping cycle. It is concluded that the western and central portions of ER, while part of the same broad topographic rise and tectonic framework, have distinctly different surface ages and gravity signatures. The western rise, including Gula and Sif Mons, is the expression of deep seated uplift with volcanism limited to the individual large shields. The eastern portion has been widely resurfaced more recently by thermal anomalies in the mantle.

  8. Hot-spot tectonics of Eistla Regio, Venus: Results from Magellan images and Pioneer Venus gravity

    NASA Technical Reports Server (NTRS)

    Grimm, Robert E.; Phillips, Roger J.

    1991-01-01

    Eistla Regio (ER) is a broad, low, discontinuous topographic rise striking roughly EW at low northern latitudes of Venus. Some 2000 x 7000 km in dimensions, it is the third largest rise in planform on Venus after Aphrodite Terra and Beta Phoebe Regiones. These rises are the key physiographic elements in a hot spot model of global tectonics including transient plume behavior. Since ER is the first such rise viewed by Magellan and the latitude is very favorable for Pioneer Venus gravity studies, some of the predictions of a time dependent hot spot model are tested. Western ER is defined as the rise including Gula and Sif Mons and central ER as that including Sappho Patera. Superior conjunction prevented Magellan from returning data on eastern ER (Pavlova) during the first mapping cycle. It is concluded that the western and central portions of ER, while part of the same broad topographic rise and tectonic framework, have distinctly different surface ages and gravity signatures. The western rise, including Gula and Sif Mons, is the expression of deep seated uplift with volcanism limited to the individual large shields. The eastern portion has been widely resurfaced more recently by thermal anomalies in the mantle.

  9. Thermal analysis of continuous and patterned multilayer films in the presence of a nanoscale hot spot

    NASA Astrophysics Data System (ADS)

    Juang, Jia-Yang; Zheng, Jinglin

    2016-10-01

    Thermal responses of multilayer films play essential roles in state-of-the-art electronic systems, such as photo/micro-electronic devices, data storage systems, and silicon-on-insulator transistors. In this paper, we focus on the thermal aspects of multilayer films in the presence of a nanoscale hot spot induced by near field laser heating. The problem is set up in the scenario of heat assisted magnetic recording (HAMR), the next-generation technology to overcome the data storage density limit imposed by superparamagnetism. We characterized thermal responses of both continuous and patterned multilayer media films using transient thermal modeling. We observed that material configurations, in particular, the thermal barriers at the material layer interfaces crucially impact the temperature field hence play a key role in determining the hot spot geometry, transient response and power consumption. With a representative generic media model, we further explored the possibility of optimizing thermal performances by designing layers of heat sink and thermal barrier. The modeling approach demonstrates an effective way to characterize thermal behaviors of micro and nano-scale electronic devices with multilayer thin film structures. The insights into the thermal transport scheme will be critical for design and operations of such electronic devices.

  10. An ancient retrovirus-like element contains hot spots for SINE insertion.

    PubMed Central

    Cantrell, M A; Filanoski, B J; Ingermann, A R; Olsson, K; DiLuglio, N; Lister, Z; Wichman, H A

    2001-01-01

    Vertebrate retrotransposons have been used extensively for phylogenetic analyses and studies of molecular evolution. Information can be obtained from specific inserts either by comparing sequence differences that have accumulated over time in orthologous copies of that insert or by determining the presence or absence of that specific element at a particular site. The presence of specific copies has been deemed to be an essentially homoplasy-free phylogenetic character because the probability of multiple independent insertions into any one site has been believed to be nil. Mys elements are a type of LTR-containing retrotransposon present in Sigmodontine rodents. In this study we have shown that one particular insert, mys-9, is an extremely old insert present in multiple species of the genus Peromyscus. We have found that different copies of this insert show a surprising range of sizes, due primarily to a continuing series of SINE (short interspersed element) insertions into this locus. We have identified two hot spots for SINE insertion within mys-9 and at each hot spot have found that two independent SINE insertions have occurred at identical sites. These results have major repercussions for phylogenetic analyses based on SINE insertions, indicating the need for caution when one concludes that the existence of a SINE at a specific locus in multiple individuals is indicative of common ancestry. Although independent insertions at the same locus may be rare, SINE insertions are not homoplasy-free phylogenetic markers. PMID:11404340

  11. A review of algorithms for detecting volcanic hot spots in satellite infrared data

    NASA Astrophysics Data System (ADS)

    Steffke, Andrea M.; Harris, Andrew J. L.

    2011-11-01

    Since the 1980s, application of thermal infrared satellite data for volcano monitoring has rapidly evolved to become a proven operational tool. Due to the large quantities of data provided by sensors in polar and geostationary orbits, as well as the sheer number of active volcanoes on earth, processing and managing such data sets requires an enormous amount of workforce. A number of algorithms have been developed to facilitate detection, location, and tracking of hot spots of active volcanoes. A collation and review of hot spot detection algorithms developed and applied by the volcanological community reveals three main types which have been applied to date: contextual, fixed threshold, and temporal. The founding algorithms for these three classes are VAST, MODVOLC, and RST, respectively. Through comparison with manually based detections, the performance of each algorithm was tested for sustained lava flows (Etna and Stromboli), strombolian activity (Stromboli), lava dome growth and collapse (Augustine), and fumarole fields (Vulcano). It is shown that, as the number of correctly identified anomalies increases, so too does the number of false positives. Although each of the algorithms operates well within the limits and criteria of their design requirements and application, under current data restraints, no algorithm can be expected to perform perfectly.

  12. Computational Study of 3-D Hot-Spot Initiation in Shocked Insensitive High-Explosive

    NASA Astrophysics Data System (ADS)

    Najjar, F. M.; Howard, W. M.; Fried, L. E.

    2011-06-01

    High explosive shock sensitivity is controlled by a combination of mechanical response, thermal properties, and chemical properties. The interplay of these physical phenomena in realistic condensed energetic materials is currently lacking. A multiscale computational framework is developed investigating hot spot (void) ignition in a single crystal of an insensitive HE, TATB. Atomistic MD simulations are performed to provide the key chemical reactions and these reaction rates are used in 3-D multiphysics simulations. The multiphysics code, ALE3D, is linked to the chemistry software, Cheetah, and a three-way coupled approach is pursued including hydrodynamics, thermal and chemical analyses. A single spherical air bubble is embedded in the insensitive HE and its collapse due to shock initiation is evolved numerically in time; while the ignition processes due chemical reactions are studied. Our current predictions showcase several interesting features regarding hot spot dynamics including the formation of a ``secondary'' jet. Results obtained with hydro-thermo-chemical processes leading to ignition growth will be discussed for various pore sizes and different shock pressures. LLNL-ABS-471438. This work performed under the auspices of the U.S. Department of Energy by LLNL under Contract DE-AC52-07NA27344.

  13. Magnetohydrodynamic solution for a Z pinch showing the production of a hot spot

    NASA Astrophysics Data System (ADS)

    Maxon, S.; Hammer, J. H.; Eddleman, J. L.; Tabak, M.; Zimmerman, G. B.; Alley, W. E.; Estabrook, K. G.; Harte, J. A.; Nash, T. J.; Sanford, T. W. L.; De Groot, J. S.

    1996-05-01

    Two-dimensional LASNEX [National Technical Information Service Document No. DE 81026329 (Zimmerman, Report No. UCRL-74811, 1973)] calculations are made for a Z pinch on Saturn, the low-impedance, low-inductance electron accelerator at the Sandia National Laboratories [D. D. Bloomquist et al. Proceedings of the Sixth IEEE Pulsed Power Conference, Arlington, VA, edited by P. J. Turchi and B. H. Bernstein (Institute of Electronics and Electrical Engineers, New York, 1987), p. 310]. The experiment is characterized by a current of 6 MA with a tungsten wire load (4 mg) at 2 mm. Two-dimensional calculations show the evolution of the Rayleigh-Taylor instability to the bubble and spike phase, causing high-density islands to form in the pinch opposite the bubbles. The two-dimensional energy flow causes a ``hot spot'' to evolve, which is shown to agree in its size and brightness with pinhole camera measurements. This is the first explicit calculation of a hot spot in two dimensions employing the full magnetohydrodynamic equations.

  14. Cortical hot spots and labyrinths: why cortical neuromodulation for episodic migraine with aura should be personalized

    PubMed Central

    Dahlem, Markus A.; Schmidt, Bernd; Bojak, Ingo; Boie, Sebastian; Kneer, Frederike; Hadjikhani, Nouchine; Kurths, Jürgen

    2015-01-01

    Stimulation protocols for medical devices should be rationally designed. For episodic migraine with aura we outline model-based design strategies toward preventive and acute therapies using stereotactic cortical neuromodulation. To this end, we regard a localized spreading depression (SD) wave segment as a central element in migraine pathophysiology. To describe nucleation and propagation features of the SD wave segment, we define the new concepts of cortical hot spots and labyrinths, respectively. In particular, we firstly focus exclusively on curvature-induced dynamical properties by studying a generic reaction-diffusion model of SD on the folded cortical surface. This surface is described with increasing level of details, including finally personalized simulations using patient's magnetic resonance imaging (MRI) scanner readings. At this stage, the only relevant factor that can modulate nucleation and propagation paths is the Gaussian curvature, which has the advantage of being rather readily accessible by MRI. We conclude with discussing further anatomical factors, such as areal, laminar, and cellular heterogeneity, that in addition to and in relation to Gaussian curvature determine the generalized concept of cortical hot spots and labyrinths as target structures for neuromodulation. Our numerical simulations suggest that these target structures are like fingerprints, they are individual features of each migraine sufferer. The goal in the future will be to provide individualized neural tissue simulations. These simulations should predict the clinical data and therefore can also serve as a test bed for exploring stereotactic cortical neuromodulation. PMID:25798103

  15. Identification of Hot Spots in Protein Structures Using Gaussian Network Model and Gaussian Naive Bayes

    PubMed Central

    Jiang, Tao; Shan, Guogen

    2016-01-01

    Residue fluctuations in protein structures have been shown to be highly associated with various protein functions. Gaussian network model (GNM), a simple representative coarse-grained model, was widely adopted to reveal function-related protein dynamics. We directly utilized the high frequency modes generated by GNM and further performed Gaussian Naive Bayes (GNB) to identify hot spot residues. Two coding schemes about the feature vectors were implemented with varying distance cutoffs for GNM and sliding window sizes for GNB based on tenfold cross validations: one by using only a single high mode and the other by combining multiple modes with the highest frequency. Our proposed methods outperformed the previous work that did not directly utilize the high frequency modes generated by GNM, with regard to overall performance evaluated using F1 measure. Moreover, we found that inclusion of more high frequency modes for a GNB classifier can significantly improve the sensitivity. The present study provided additional valuable insights into the relation between the hot spots and the residue fluctuations. PMID:27882325

  16. Hot spots and future directions of research on the neuroprotective effects of nimodipine

    PubMed Central

    Li, Runhui

    2014-01-01

    Calcium antagonists are widely used in the clinical treatment of ischemic cerebrovascular disease because of their vascular and neuroprotective effects. Nimodipine, a typical calcium antagonist, can cross the blood-brain barrier and act selectively at neurons and blood vessels of target tissues, thus exerting neuroprotective effects. The aim of the present study was to explore the hot spots and future trends of research on the neuroprotective effects of nimodipine. We retrieved 425 articles on the neuroprotective effects of nimodipine that were indexed in the Web of the Science database between 2000 and 2014. The retrieved articles were analyzed using document analysis reporting and the derived information function in the Web of Science, and the information visualization software CiteSpace III. The reference co-citation network was plotted, and the high frequency key words in these publications were used to analyze the research fronts and development trends for nimodipine neuroprotection. According to these co-citation clusters, the research front of nimodipine neuroprotection is the use of randomized controlled trials to study nimodipine intervention of subarachnoid hemorrhage. Using time zone view analysis on hot spots labeled with a key word, the areas of interest in the field of nimodipine neuroprotection are nimodipine pharmacology and therapeutics, blood-brain barrier, trials, and anti-angiospasm. PMID:25558246

  17. Grain-Scale Simulations of Hot-Spot Initiation for Shocked TATB

    SciTech Connect

    Najjar, F; Howard, W; Fried, L

    2009-07-31

    High-explosive (HE) material consists of large-sized grains with micron-sized embedded impurities and pores. Under various mechanical/thermal insults, these pores collapse generating high-temperature regions leading to ignition. A computational study has been performed to investigate the mechanisms of pore collapse and hot spot initiation in TATB crystals, employing the thermohydrodynamics arbitrary-Lagrange-Eulerian code ALE3D. This initial study includes non-reactive dynamics to isolate the thermal and hydrodynamical effects. Two-dimensional high-resolution large-scale meso-scale simulations have been undertaken. We study an axisymmetric configuration for pore radii ranging from 0.5 to 2{micro}m, with initial shock pressures in the range from 3 to 11 GPa. A Mie-Gruneisen Equation of State (EOS) model is used for TATB, and includes a constant yield strength and shear modulus; while the air in the pore invokes a Livermore Equation of State (LEOS) model. The parameter space is systematically studied by considering various shock strengths, pore diameters and material properties. We find that thermal diffusion from the collapsed pores has an important effect in generating high-temperature hot spots in the TATB.

  18. HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering

    PubMed Central

    Bendl, Jaroslav; Stourac, Jan; Sebestova, Eva; Vavra, Ondrej; Musil, Milos; Brezovsky, Jan; Damborsky, Jiri

    2016-01-01

    HotSpot Wizard 2.0 is a web server for automated identification of hot spots and design of smart libraries for engineering proteins’ stability, catalytic activity, substrate specificity and enantioselectivity. The server integrates sequence, structural and evolutionary information obtained from 3 databases and 20 computational tools. Users are guided through the processes of selecting hot spots using four different protein engineering strategies and optimizing the resulting library's size by narrowing down a set of substitutions at individual randomized positions. The only required input is a query protein structure. The results of the calculations are mapped onto the protein's structure and visualized with a JSmol applet. HotSpot Wizard lists annotated residues suitable for mutagenesis and can automatically design appropriate codons for each implemented strategy. Overall, HotSpot Wizard provides comprehensive annotations of protein structures and assists protein engineers with the rational design of site-specific mutations and focused libraries. It is freely available at http://loschmidt.chemi.muni.cz/hotspotwizard. PMID:27174934

  19. Presence of a thermoregulatory hot spot in the prothorax of the large carpenter bee and the bumble bee.

    PubMed

    Volynchik, Stanislav; Plotkin, Marian; Ermakov, Natalya Y; Bergman, David J; Ishay, Jacob S

    2006-11-01

    In both the large carpenter bee (Xylocopa pubescens) and the bumblebee (Bombus terrestris), a hot spot was detected in the center of the prothorax on its dorsal-external aspect. In both cases, the temperature in this hot spot was found to be greater than the ambient temperature and that at the tip of the gaster. In B. terrestris, it was higher by 9-10 degrees C from that at the gaster tip and by 15-16 degrees C from the ambient temperature, while in X. pubescens the corresponding differences were 11-20 degrees C and 18-19 degrees C, respectively. The recorded thermal differences were not fixed but were rather variable, temporally as well as individually, but invariably all individuals measured showed these temperature differences. Furthermore, in none of the studied specimens was a hot spot detected in any part of the body other than the prothorax. From this hot spot in the prothorax, there is a cascade of temperatures in both directions, that is, anteriorly towards the head and posteriorly towards the gaster, with a graded drop in temperature in either direction. This article discusses possible reasons for the existence of such a hot spot in this particular location (the prothorax), its role or function, and its mode of operation. The authors speculate that it is a thermoregulatory center (for heating or cooling) that might be present in possibly all Hymenoptera that spend a considerable part of their life flying, regardless of whether they are social, parasocial, or solitary.

  20. Effects of Long- and Intermediate-Wavelength Nonuniformities on Hot-Spot Energetics of Hydrodynamic Equivalent Targets

    NASA Astrophysics Data System (ADS)

    Bose, A.; Betti, R.; Woo, K. M.; Christopherson, A. R.; Shvarts, D.

    2015-11-01

    The impact of intermediate- and low-mode nonuniformities on the performance of inertial confinement fusion (ICF) implosions is investigated by a detailed study of hot-spot energetics. It is found that low- (1 ~ 2) and intermediate-mode (1 >= 10) asymmetries affect the hot-spot hydrodynamics in very different ways. It is observed that for low-mode asymmetries, the fusion yield decreases because of a significant reduction in hot-spot pressure while the neutron-averaged hot-spot volume remains comparable to that of unperturbed (clean) simulations. On the other hand, implosions with moderate-amplitude, intermediate-wavelength modes, which are amplified by the Rayleigh-Taylor instability (RTI), exhibit a fusion-yield degradation primarily caused by a reduction in the burn volume without significant degradation of the pressure. For very large amplitudes, the intermediate modes show a ``secondary piston effect,'' where the converging RTI spikes compress a much smaller volume, allowing for a secondary conversion of the shell's kinetic energy to internal energy at a central region. Understanding the effects of nonuniformities on the hot-spot energetics provides valuable insight in determining the causes of performance degradation in current ICF experiments. This material is based upon work supported by the Department of Energy National Nuclear Security Administration under Award Number DE-NA0001944 and DE-FC02-04ER54789 (Fusion Science Center).

  1. Local and sex-specific biases in crossover vs. noncrossover outcomes at meiotic recombination hot spots in mice

    PubMed Central

    de Boer, Esther; Jasin, Maria; Keeney, Scott

    2015-01-01

    Meiotic recombination initiated by programmed double-strand breaks (DSBs) yields two types of interhomolog recombination products, crossovers and noncrossovers, but what determines whether a DSB will yield a crossover or noncrossover is not understood. In this study, we analyzed the influence of sex and chromosomal location on mammalian recombination outcomes by constructing fine-scale recombination maps in both males and females at two mouse hot spots located in different regions of the same chromosome. These include the most comprehensive maps of recombination hot spots in oocytes to date. One hot spot, located centrally on chromosome 1, behaved similarly in male and female meiosis: Crossovers and noncrossovers formed at comparable levels and ratios in both sexes. In contrast, at a distal hot spot, crossovers were recovered only in males even though noncrossovers were obtained at similar frequencies in both sexes. These findings reveal an example of extreme sex-specific bias in recombination outcome. We further found that estimates of relative DSB levels are surprisingly poor predictors of relative crossover frequencies between hot spots in males. Our results demonstrate that the outcome of mammalian meiotic recombination can be biased, that this bias can vary depending on location and cellular context, and that DSB frequency is not the only determinant of crossover frequency. PMID:26251527

  2. Local and sex-specific biases in crossover vs. noncrossover outcomes at meiotic recombination hot spots in mice.

    PubMed

    de Boer, Esther; Jasin, Maria; Keeney, Scott

    2015-08-15

    Meiotic recombination initiated by programmed double-strand breaks (DSBs) yields two types of interhomolog recombination products, crossovers and noncrossovers, but what determines whether a DSB will yield a crossover or noncrossover is not understood. In this study, we analyzed the influence of sex and chromosomal location on mammalian recombination outcomes by constructing fine-scale recombination maps in both males and females at two mouse hot spots located in different regions of the same chromosome. These include the most comprehensive maps of recombination hot spots in oocytes to date. One hot spot, located centrally on chromosome 1, behaved similarly in male and female meiosis: Crossovers and noncrossovers formed at comparable levels and ratios in both sexes. In contrast, at a distal hot spot, crossovers were recovered only in males even though noncrossovers were obtained at similar frequencies in both sexes. These findings reveal an example of extreme sex-specific bias in recombination outcome. We further found that estimates of relative DSB levels are surprisingly poor predictors of relative crossover frequencies between hot spots in males. Our results demonstrate that the outcome of mammalian meiotic recombination can be biased, that this bias can vary depending on location and cellular context, and that DSB frequency is not the only determinant of crossover frequency.

  3. Detection of direct and indirect noise generated by synthetic hot spots in a duct

    NASA Astrophysics Data System (ADS)

    De Domenico, Francesca; Rolland, Erwan O.; Hochgreb, Simone

    2017-04-01

    Sound waves in a combustor are generated from fluctuations in the heat release rate (direct noise) or the acceleration of entropy, vorticity or compositional perturbations through nozzles or turbine guide vanes (indirect or entropy noise). These sound waves are transmitted downstream as well as reflected upstream of the acceleration point, contributing to the overall noise emissions, or triggering combustion instabilities. Previous experiments attempted to isolate indirect noise by generating thermoacoustic hot spots electrically and measuring the transmitted acoustic waves, yet there are no measurements on the backward propagating entropy and acoustic waves. This work presents the first measurements which clearly separate the direct and indirect noise contributions to pressure fluctuations upstream of the acceleration point. Synthetic entropy spots are produced by unsteady electrical heating of a grid of thin wires located in a tube. Compression waves (direct noise) are generated from this heating process. The hot spots are then advected with the mean flow and finally accelerated through an orifice plate located at the end of the tube, producing a strong acoustic signature which propagates upstream (indirect noise). The convective time is selected to be longer than the heating pulse length, in order to obtain a clear time separation between direct and indirect noise in the overall pressure trace. The contribution of indirect noise to the overall noise is shown to be non-negligible either in subsonic or sonic throat conditions. However, the absolute amplitude of direct noise is larger than the corresponding fraction of indirect noise, explaining the difficulty in clearly identifying the two contributions when they are merged. Further, the work shows the importance of using appropriate pressure transducer instrumentation and correcting for the respective transfer functions in order to account for low frequency effects in the determination of pressure fluctuations.

  4. Imaging of spatially extended hot spots with coded apertures for intra-operative nuclear medicine applications

    NASA Astrophysics Data System (ADS)

    Kaissas, I.; Papadimitropoulos, C.; Potiriadis, C.; Karafasoulis, K.; Loukas, D.; Lambropoulos, C. P.

    2017-01-01

    Coded aperture imaging transcends planar imaging with conventional collimators in efficiency and Field of View (FOV). We present experimental results for the detection of 141 keV and 122 keV γ-photons emitted by uniformly extended 99mTc and 57Co hot-spots along with simulations of uniformly and normally extended 99mTc hot-spots. These results prove that the method can be used for intra-operative imaging of radio-traced sentinel nodes and thyroid remnants. The study is performed using a setup of two gamma cameras, each consisting of a coded-aperture (or mask) of Modified Uniformly Redundant Array (MURA) of rank 19 positioned on top of a CdTe detector. The detector pixel pitch is 350 μm and its active area is 4.4 × 4.4 cm2, while the mask element size is 1.7 mm. The detectable photon energy ranges from 15 keV up to 200 keV with an energy resolution of 3–4 keV FWHM. Triangulation is exploited to estimate the 3D spatial coordinates of the radioactive spots within the system FOV. Two extended sources, with uniform distributed activity (11 and 24 mm in diameter, respectively), positioned at 16 cm from the system and with 3 cm distance between their centers, can be resolved and localized with accuracy better than 5%. The results indicate that the estimated positions of spatially extended sources lay within their volume size and that neighboring sources, even with a low level of radioactivity, such as 30 MBq, can be clearly distinguished with an acquisition time about 3 seconds.

  5. Liquid Metal Embrittlement in Resistance Spot Welding and Hot Tensile Tests of Surface-refined TWIP Steels

    NASA Astrophysics Data System (ADS)

    Barthelmie, J.; Schram, A.; Wesling, V.

    2016-03-01

    Automotive industry strives to reduce vehicle weight and therefore fuel consumption and carbon dioxide emissions. Especially in the auto body, material light weight construction is practiced, but the occupant safety must be ensured. These requirements demand high-strength steels with good forming and crash characteristics. Such an approach is the use of high- manganese-content TWIP steels, which achieve strengths of around 1,000 MPa and fracture strains of more than 60%. Welding surface-refined TWIP steels reduces their elongation at break and produces cracks due to the contact with liquid metal and the subsequent liquid metal embrittlement (LME). The results of resistance spot welds of mixed joints of high-manganese- content steel in combination with micro-alloyed ferritic steel and hot tensile tests are presented. The influence of different welding parameters on the sensitivity to liquid metal embrittlement is investigated by means of spot welding. In a high temperature tensile testing machine, the influence of different parameters is determined regardless of the welding process. Defined strains just below or above the yield point, and at 25% of elongation at break, show the correlation between the applied strain and liquid metal crack initiation. Due to the possibility to carry out tensile tests on a wide range of temperatures, dependencies of different temperatures of the zinc coating to the steel can be identified. Furthermore, the attack time of the zinc on the base material is investigated by defined heating periods.

  6. A reactive burn model for shock initiation in a PBX: scaling and separability based on the hot spot concept

    SciTech Connect

    Show, Milton S; Menikoff, Ralph

    2010-01-01

    In the formulation of a reactive burn model for shock initiation, we endeavor to incorporate a number of effects based on the underlying physical concept of hot spot ignition followed by the growth of reaction due to diverging deflagration fronts. The passage of a shock front sets the initial condition for reaction, leading to a fraction of the hot spots that completely burn while others will quench. The form of the rate model is chosen to incorporate approximations based on the physical picture. In particular, the approximations imply scaling relations that are then used to mathematically separate various contributions. That is, the model is modular and refinements can be applied separately without changing the other contributions. For example, the effect of initial temperature, porosity, etc. predominantly enter the characterization of the non-quenching hot spot distribution. A large collection of velocity gauge data is shown to be well represented by the model with a very small number of parameters.

  7. Detection of ligand binding hot spots on protein surfaces via fragment-based methods: application to DJ-1 and glucocerebrosidase

    SciTech Connect

    Landon, Melissa R.; Lieberman, Raquel L.; Hoang, Quyen Q.; Ju, Shulin; Caaveiro, Jose M.M.; Orwig, Susan D.; Kozakov, Dima; Brenke, Ryan; Chuang, Gwo-Yu; Beglov, Dmitry; Vajda, Sandor; Petsko, Gregory A.; Ringe, Dagmar

    2010-08-04

    The identification of hot spots, i.e., binding regions that contribute substantially to the free energy of ligand binding, is a critical step for structure-based drug design. Here we present the application of two fragment-based methods to the detection of hot spots for DJ-1 and glucocerebrosidase (GCase), targets for the development of therapeutics for Parkinson's and Gaucher's diseases, respectively. While the structures of these two proteins are known, binding information is lacking. In this study we employ the experimental multiple solvent crystal structures (MSCS) method and computational fragment mapping (FTMap) to identify regions suitable for the development of pharmacological chaperones for DJ-1 and GCase. Comparison of data derived via MSCS and FTMap also shows that FTMap, a computational method for the identification of fragment binding hot spots, is an accurate and robust alternative to the performance of expensive and difficult crystallographic experiments.

  8. The Cause of the Hot Spot in Vegetation Canopies and Soils: Shadow-Hiding Versus Coherent Backscatter

    NASA Technical Reports Server (NTRS)

    Hapke, Bruce; DiMucci, Dominick; Nelson, Robert; Smythe, William

    1996-01-01

    Two different mechanisms, shadow-hiding and coherent backscatter, can cause a hot spot, or opposition effect, in the bidirectional reflectance of vegetation and soils. Because the two mechanisms sample different properties, it is important to know which one is primarily responsible in a given medium. This question can be answered by measuring the bidirectional reflectance in circularly polarized light. If the results of the limited experiments reported here can be extrapolated to a wider range of materials, it appears that the primary cause of the hot spot in most vegetation canopies and in moist, clumpy soils is shadow-hiding. However, in vegetation with large numbers of wavelength-sized structures, such as mosses, and in dry, fine-grained soils, the hot spot is dominated by coherent backscatter.

  9. Metatranscriptomic Analysis Reveals Unexpectedly Diverse Microbial Metabolism in a Biogeochemical Hot Spot in an Alluvial Aquifer

    PubMed Central

    Jewell, Talia N. M.; Karaoz, Ulas; Bill, Markus; Chakraborty, Romy; Brodie, Eoin L.; Williams, Kenneth H.; Beller, Harry R.

    2017-01-01

    Organic matter deposits in alluvial aquifers have been shown to result in the formation of naturally reduced zones (NRZs), which can modulate aquifer redox status and influence the speciation and mobility of metals, affecting groundwater geochemistry. In this study, we sought to better understand how natural organic matter fuels microbial communities within anoxic biogeochemical hot spots (NRZs) in a shallow alluvial aquifer at the Rifle (CO) site. We conducted a 20-day microcosm experiment in which NRZ sediments, which were enriched in buried woody plant material, served as the sole source of electron donors and microorganisms. The microcosms were constructed and incubated under anaerobic conditions in serum bottles with an initial N2 headspace and were sampled every 5 days for metagenome and metatranscriptome profiles in combination with biogeochemical measurements. Biogeochemical data indicated that the decomposition of native organic matter occurred in different phases, beginning with mineralization of dissolved organic matter (DOM) to CO2 during the first week of incubation, followed by a pulse of acetogenesis that dominated carbon flux after 2 weeks. A pulse of methanogenesis co-occurred with acetogenesis, but only accounted for a small fraction of carbon flux. The depletion of DOM over time was strongly correlated with increases in expression of many genes associated with heterotrophy (e.g., amino acid, fatty acid, and carbohydrate metabolism) belonging to a Hydrogenophaga strain that accounted for a relatively large percentage (~8%) of the metatranscriptome. This Hydrogenophaga strain also expressed genes indicative of chemolithoautotrophy, including CO2 fixation, H2 oxidation, S-compound oxidation, and denitrification. The pulse of acetogenesis appears to have been collectively catalyzed by a number of different organisms and metabolisms, most prominently pyruvate:ferredoxin oxidoreductase. Unexpected genes were identified among the most highly expressed

  10. Metatranscriptomic Analysis Reveals Unexpectedly Diverse Microbial Metabolism in a Biogeochemical Hot Spot in an Alluvial Aquifer.

    PubMed

    Jewell, Talia N M; Karaoz, Ulas; Bill, Markus; Chakraborty, Romy; Brodie, Eoin L; Williams, Kenneth H; Beller, Harry R

    2017-01-01

    Organic matter deposits in alluvial aquifers have been shown to result in the formation of naturally reduced zones (NRZs), which can modulate aquifer redox status and influence the speciation and mobility of metals, affecting groundwater geochemistry. In this study, we sought to better understand how natural organic matter fuels microbial communities within anoxic biogeochemical hot spots (NRZs) in a shallow alluvial aquifer at the Rifle (CO) site. We conducted a 20-day microcosm experiment in which NRZ sediments, which were enriched in buried woody plant material, served as the sole source of electron donors and microorganisms. The microcosms were constructed and incubated under anaerobic conditions in serum bottles with an initial N2 headspace and were sampled every 5 days for metagenome and metatranscriptome profiles in combination with biogeochemical measurements. Biogeochemical data indicated that the decomposition of native organic matter occurred in different phases, beginning with mineralization of dissolved organic matter (DOM) to CO2 during the first week of incubation, followed by a pulse of acetogenesis that dominated carbon flux after 2 weeks. A pulse of methanogenesis co-occurred with acetogenesis, but only accounted for a small fraction of carbon flux. The depletion of DOM over time was strongly correlated with increases in expression of many genes associated with heterotrophy (e.g., amino acid, fatty acid, and carbohydrate metabolism) belonging to a Hydrogenophaga strain that accounted for a relatively large percentage (~8%) of the metatranscriptome. This Hydrogenophaga strain also expressed genes indicative of chemolithoautotrophy, including CO2 fixation, H2 oxidation, S-compound oxidation, and denitrification. The pulse of acetogenesis appears to have been collectively catalyzed by a number of different organisms and metabolisms, most prominently pyruvate:ferredoxin oxidoreductase. Unexpected genes were identified among the most highly expressed

  11. Creating a GIS-based model of marine debris "hot spots" to improve efficiency of a lobster trap debris removal program.

    PubMed

    Martens, Justin; Huntington, Brittany E

    2012-05-01

    Debris removal programs are combatting the accumulation of derelict fishing gear and other debris in marine habitats. We analyzed 5 years of lobster trap debris removal data in Biscayne National Park, Florida to assess removal efficiency and develop spatially-explicit mapping tools to guide future removals. We generated and validated debris "hot spots" maps that combined remotely-sensed data (i.e. benthic habitat type and bathymetry) with 862 locations of previous debris collection. Our hot spot models spatially depict regions of likely debris accumulation, reducing the search area by 95% (from 332 km(2) to 18 km(2)) and encompassing 100% of the validation sites. Our analyses indicate removal contractors using sub-surface towed divers enhanced debris recovery. Additionally, the quantity of debris removed did not decrease with increased efforts, suggesting that debris supply in situ exceeds removal efforts. We conclude with the importance of coupling analysis of ongoing debris removal programs with GIS technology to improve removal efforts.

  12. Deep structure under Yellowstone National Park U.S.A.: A continental "hot spot"

    USGS Publications Warehouse

    Iyer, H.M.

    1979-01-01

    In order to understand the origin of long-lived loci of volcanism (sometimes called "hot spots") and their possible role in global tectonic processes, it is essential to know their deep structure. Even though some work has been done on the crustal, upper-mantle, and deep-mantle structure under some of these "hot spots", the picture is far from clear. In an attempt to study the structure under the Yellowstone National Park U.S.A., which is considered to be such a "hot spot", we recorded teleseisms using 26 telemetered seismic stations and three groups of portable stations. The network was operated within a 150 km radius centered on the Yellowstone caldera, the major, Quaternary volcanic feature of the Yellowstone region. Teleseismic delays of about 1.5 sec are found inside the caldera, and the delays remain high over a 100 km wide area around the caldera. The spatial distribution and magnitude of the delays indicate the presence of a large body of low-velocity material with horizontal dimensions corresponding approximately to the caldera size (40 km ?? 80 km) near the surface and extending to a depth of 200-250 km under the caldera. Using ray-tracing and inversion techniques, it is estimated that the compressional velocity inside the anomalous body is lower than in the surrounding rock by about 15% in the upper crust and by 5% in the lower crust and upper mantle. It is postulated that the body is partly composed of molten rock with a high degree of partial melting at shallow depths and is responsible for the observed Yellowstone volcanism. The large size of the partially molten body, taken together with its location at the head of a 350 km zone of volcanic propagation along the axis of the Snake River Plain, indicates that the volcanism associated with Yellowstone has its origin below the lithosphere and is relatively stationary with respect to plate motion. Using our techniques, we are unable to detect any measurable velocity contrast in the mantle beneath the low

  13. Ion-microprobe dating of zircon from quartz-graphite veins at the Bristol, New Hampshire, metamorphic hot spot

    SciTech Connect

    Zeitler, P.K. ); Barreiro, B.; Chamberlain, C.P. ); Rumble, D. III )

    1990-07-01

    Detrital zircons entrained in hydrothermal quartz-graphite-rutile veins found near the Bristol, New Hampshire, metamorphic hot spot are overgrown by thin rims. Ion-microprobe analyses of these rims date their growth at 408 {plus minus} 6 Ma. These measurements quantitatively confirm textural evidence that the graphite veins were emplaced during peak metamorphism associated with the Acadian orogeny, and they provide a direct positive test of the hypothesis, based on petrological and stable-isotope evidence, that the hydrothermal systems responsible for the quartz-graphite veins were also responsible for the hot-spot metamorphism.

  14. African hot spot volcanism: small-scale convection in the upper mantle beneath cratons.

    PubMed

    King, S D; Ritsema, J

    2000-11-10

    Numerical models demonstrate that small-scale convection develops in the upper mantle beneath the transition of thick cratonic lithosphere and thin oceanic lithosphere. These models explain the location and geochemical characteristics of intraplate volcanos on the African and South American plates. They also explain the presence of relatively high seismic shear wave velocities (cold downwellings) in the mantle transition zone beneath the western margin of African cratons and the eastern margin of South American cratons. Small-scale, edge-driven convection is an alternative to plumes for explaining intraplate African and South American hot spot volcanism, and small-scale convection is consistent with mantle downwellings beneath the African and South American lithosphere.

  15. Treatability studies on F/H Area ``hot spot`` groundwater composite. Revision 1

    SciTech Connect

    Bibler, J.P.

    1993-08-30

    The data found in this report were collected from laboratory experiments that were conducted to characterize the ``hot spot`` groundwater before and after pH adjustment, to describe the settling behavior and particle size of the precipitates resulting from pH adjustment, and to compare several methods of pH adjustment. Although Decontamination Factors (DFs) for all precipitating agents are similar, the best settling characteristics and most manageable precipitate were produced when 25 ppM Al{sup 3+} was introduced as Al{sub 2}(SO{sub 4}){sub 3} and pH adjustment was made from 6--8 with NaOH. The resulting precipitate will not be a hazardous secondary waste.

  16. Current hot spot in the spin-valley blockade in carbon nanotubes

    NASA Astrophysics Data System (ADS)

    Széchenyi, Gábor; Pályi, András

    2013-12-01

    We present a theoretical study of the spin-valley blockade transport effect in a double quantum dot defined in a straight carbon nanotube. We find that intervalley scattering due to short-range impurities completely lifts the spin-valley blockade and induces a large leakage current in a certain confined range of the external magnetic field vector. This current hot spot emerges due to different effective magnetic fields acting on the spin-valley qubit states of the two quantum dots. Our predictions are compared to a recent measurement [F. Pei , Nat. Nanotech.1748-338710.1038/nnano.2012.160 7, 630 (2012)]. We discuss the implications for blockade-based schemes for qubit initialization/readout and motion sensing of nanotube-based mechanical resonators.

  17. Simulation of the radiation from the hot spot of an X-pinch

    NASA Astrophysics Data System (ADS)

    Oreshkin, V. I.; Artyomov, A. P.; Chaikovsky, S. A.; Oreshkin, E. V.; Rousskikh, A. G.

    2017-01-01

    The results of X-pinch experiments performed using a small-sized pulse generator are analyzed. The generator, capable of producing a 200-kA, 180-ns current, was loaded with an X-pinch made of four 35-μm-diameter aluminum wires. The analysis consists of a one-dimensional radiation magnetohydrodynamic simulation of the formation of a hot spot in an X-pinch, taking into account the outflow of material from the neck region. The radiation loss and the ion species composition of the pinch plasma are calculated based on a stationary collisional-radiative model, including balance equations for the populations of individual levels. With this model, good agreement between simulation predictions and experimental data has been achieved: the experimental and the calculated radiation power and pulse duration differ by no more than twofold. It has been shown that the x-ray pulse is formed in the radiative collapse region, near its boundary.

  18. From electroconvective vortices to current hot spots on ion selective membranes subject to concentration polarization

    NASA Astrophysics Data System (ADS)

    Wang, Karen; Mani, Ali

    2016-11-01

    Electroconvective instabilities near ion-selective surfaces have been shown to greatly enhance ion transport and play a significant role in a wide range of applications in electrochemistry. When the driving voltage exceeds a threshold, electroconvection becomes chaotic and leads to intermittent spikes of current density on the ion-selective surface. We present an investigation of this phenomenon by considering a canonical setting consisting of a symmetric binary electrolyte next to a flat, ion-selective membrane subject to an external driving voltage. By tracking individual rolls of vortices, we reveal the common mechanism under which the three-way coupled fluid dynamics, ion transport, and electrostatic effects lead to advective displacement of ion concentration field, sustained vortices and vortex migration, and current hot spots on the membrane.

  19. Mutational hot spots in Ig V region genes of human follicular lymphomas

    PubMed Central

    1988-01-01

    The genes coding for the Ig light chains expressed in two cases of human follicular lymphoma were cloned and sequenced. In each case, multiple independent isolates of the tumor population were compared. Although each tumor represented a single clone of B cells with a unique V/J joint, different cells within each tumor had accumulated multiple point mutations in the V gene during clonal expansion. Most of the mutations observed were silent, but some resulted in amino acid replacements. Identical silent mutations were often observed in independent isolates of each tumor. By combining the current data with VH sequences obtained previously from the same cells, it was apparent that the repetitive silent mutations could not be explained solely by a genealogic tree. Such mutations could represent hot spots whose tendency to mutate may be influenced by neighboring DNA sequences or by the methylation of specific cytosine residues. PMID:3045247

  20. Whole-genome sequencing in autism identifies hot spots for de novo germline mutation.

    PubMed

    Michaelson, Jacob J; Shi, Yujian; Gujral, Madhusudan; Zheng, Hancheng; Malhotra, Dheeraj; Jin, Xin; Jian, Minghan; Liu, Guangming; Greer, Douglas; Bhandari, Abhishek; Wu, Wenting; Corominas, Roser; Peoples, Aine; Koren, Amnon; Gore, Athurva; Kang, Shuli; Lin, Guan Ning; Estabillo, Jasper; Gadomski, Therese; Singh, Balvindar; Zhang, Kun; Akshoomoff, Natacha; Corsello, Christina; McCarroll, Steven; Iakoucheva, Lilia M; Li, Yingrui; Wang, Jun; Sebat, Jonathan

    2012-12-21

    De novo mutation plays an important role in autism spectrum disorders (ASDs). Notably, pathogenic copy number variants (CNVs) are characterized by high mutation rates. We hypothesize that hypermutability is a property of ASD genes and may also include nucleotide-substitution hot spots. We investigated global patterns of germline mutation by whole-genome sequencing of monozygotic twins concordant for ASD and their parents. Mutation rates varied widely throughout the genome (by 100-fold) and could be explained by intrinsic characteristics of DNA sequence and chromatin structure. Dense clusters of mutations within individual genomes were attributable to compound mutation or gene conversion. Hypermutability was a characteristic of genes involved in ASD and other diseases. In addition, genes impacted by mutations in this study were associated with ASD in independent exome-sequencing data sets. Our findings suggest that regional hypermutation is a significant factor shaping patterns of genetic variation and disease risk in humans.

  1. Anatomy of a Venusian hot spot - Geology, gravity, and mantle dynamics of Eistla Regio

    NASA Technical Reports Server (NTRS)

    Grimm, Robert E.; Phillips, Roger J.

    1992-01-01

    Results of a study of the western and central portions of the Venusian hot spot Eistla Regio are presented. Magellan radar images were mapped to elucidate the general geologic history of the region. Radial fracture systems both on the rises and volcanoes indicate that uplift and associated faulting accompanied volcanic construction. Prominent fracture zones strike WNW to NW, parallel to the long axis of the highlands. The largest of these, Guor Linea, exhibits a progressive deformation history that may include minor clockwise rotation in addition to bulk NNE-SSW extension. Pioneer Venus line-of-sight accelerations were inverted for vertical gravity which, when combined with topography, were used to solve for mass anomalies on the crust-mantle boundary and in the upper levels of the mantle convective system.

  2. Hot spot and temperature analysis of shocked hydrocarbon polymer foams using molecular dynamics simulation

    SciTech Connect

    Lane, J. Matthew D.; Grest, Gary S.; Mattsson, Thomas R.

    2013-11-01

    Hydrocarbon polymers, foams and nanocomposites are increasingly being subjected to extreme environments. Molecular scale modeling of these materials offers insight into failure mechanisms and complex response. Prior classical molecular dynamics (MD) simulations of the principal shock Hugoniot for two hydrocarbon polymers, polyethylene (PE) and poly (4-methyl-1-pentene) (PMP) have shown good agreement with density functional theory (DFT) calculations and experiments conducted at Sandia National Laboratories. We extended these results to include low-density polymer foams using nonequilibrium MD techniques and found good quantitative agreement with experiment. Here, we have measured the local temperature during void collapse to investigate the formation of hot spots and their relationship to polymer dissociation in foams.

  3. Hot spots in mortality from drug poisoning in the United States, 2007-2009.

    PubMed

    Rossen, Lauren M; Khan, Diba; Warner, Margaret

    2014-03-01

    Over the past several years, the death rate associated with drug poisoning has increased by over 300% in the U.S. Drug poisoning mortality varies widely by state, but geographic variation at the substate level has largely not been explored. National mortality data (2007-2009) and small area estimation methods were used to predict age-adjusted death rates due to drug poisoning at the county level, which were then mapped in order to explore: whether drug poisoning mortality clusters by county, and where hot and cold spots occur (i.e., groups of counties that evidence extremely high or low age-adjusted death rates due to drug poisoning). Results highlight several regions of the U.S. where the burden of drug poisoning mortality is especially high. Findings may help inform efforts to address the growing problem of drug poisoning mortality by indicating where the epidemic is concentrated geographically.

  4. Computational study of 3-D hot-spot initiation in shocked insensitive high-explosive

    NASA Astrophysics Data System (ADS)

    Najjar, F. M.; Howard, W. M.; Fried, L. E.; Manaa, M. R.; Nichols, A., III; Levesque, G.

    2012-03-01

    High-explosive (HE) material consists of large-sized grains with micron-sized embedded impurities and pores. Under various mechanical/thermal insults, these pores collapse generating hightemperature regions leading to ignition. A hydrodynamic study has been performed to investigate the mechanisms of pore collapse and hot spot initiation in TATB crystals, employing a multiphysics code, ALE3D, coupled to the chemistry module, Cheetah. This computational study includes reactive dynamics. Two-dimensional high-resolution large-scale meso-scale simulations have been performed. The parameter space is systematically studied by considering various shock strengths, pore diameters and multiple pore configurations. Preliminary 3-D simulations are undertaken to quantify the 3-D dynamics.

  5. The Role of Water Occlusion for the Definition of a Protein Binding Hot-Spot.

    PubMed

    Moreira, Irina S

    2015-01-01

    Biological systems rely on the establishment of interactions between biomolecules, which take place in the aqueous environment of the cell. It was already demonstrated that a small set of residues at the interface, Hot-Spots(HS), contributes significantly to the binding free energy. However, these energetic determinants of affinity and specificity are still not fully understood. Moreover, the contribution of water to their HS character is also poorly characterized. In this review, we have focused on the structural data available that support the occlusion of HS from solvent, and therefore the "O-ring theory"not only on protein-protein but also on protein-DNA complexes. We also emphasized the use of Solvent Accessible Surface Area (SASA) features in a variety of machine-learning approaches that aim to detect binding HS.

  6. Particle accelerators in the hot spots of radio galaxy 3C 445, imaged with the VLT.

    PubMed

    Prieto, M Almudena; Brunetti, Gianfranco; Mack, Karl-Heinz

    2002-10-04

    Hot spots (HSs) are regions of enhanced radio emission produced by supersonic jets at the tip of the radio lobes of powerful radio sources. Obtained with the Very Large Telescope (VLT), images of the HSs in the radio galaxy 3C 445 show bright knots embedded in diffuse optical emission distributed along the post-shock region created by the impact of the jet into the intergalactic medium. The observations reported here confirm that relativistic electrons are accelerated by Fermi-I acceleration processes in HSs. Furthermore, both the diffuse emission tracing the rims of the front shock and the multiple knots demonstrate the presence of additional continuous re-acceleration processes of electrons (Fermi-II).

  7. Enhancement of electron hot spot relaxation in photoexcited plasmonic structures by thermal diffusion

    NASA Astrophysics Data System (ADS)

    Spitzer, F.; Glavin, B. A.; Belotelov, V. I.; Vondran, J.; Akimov, I. A.; Kasture, S.; Achanta, V. G.; Yakovlev, D. R.; Bayer, M.

    2016-11-01

    We demonstrate that in confined plasmonic metal structures subject to ultrafast laser excitation, electron thermal diffusion (ETD) can provide spatial redistribution of excess energy faster than its transfer to the lattice. This relaxation occurs after the excitation of nanometer-sized hot spots in the confined structure, changing sensitively the optical parameters in these regions. The changes become essential when the plasmonic resonance condition is met for both excitation and detection, as evidenced by a pump-probe experiment on plasmonic gold lattices: Subpicosecond relaxation with characteristic times well described by a two-temperature model involving ETD is observed. The results suggest that the dynamical optical response in plasmonic structures can be tuned by the selection of the structural geometry as well as the choice of wavelength and polarization of the excitation and detection light.

  8. Integrative Analysis of Hot Spot Conditions in MagLIF Experiments

    NASA Astrophysics Data System (ADS)

    Knapp, Patrick; Gomez, Matthew; Harding, Eric; Hansen, Stephanie; Hahn, Kelly; Geissel, Matthias; Chandler, Gordon; Smith, Ian; Slutz, Steve; Jennings, Chris; Martin, Matthew; Schmit, Paul; Peterson, Kyle; Rochau, Gregory; McBride, Ryan; Sinars, Daniel

    2016-10-01

    A large data set incorporating all available neutron and x-ray data is used to analyze a broad range of Magnetized Liner Inertial Fusion (MagLIF) experiments conducted on the Z machine at Sandia National Laboratories over the past two years. Electron and ion temperatures, electron density, mix fraction, burn volume and duration, and neutron and x-ray yields are all measured on each experiment; several through multiple independent methods. Complementary methods are used to infer the hot spot energy and pressure, and trends are analyzed. The results are placed in the context of accepted performance metrics for Magneto-Inertial Fusion. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's National Nuclear Security Administration under contract DE.

  9. Rett syndrome in females with CTS hot spot deletions: a disorder profile.

    PubMed

    Smeets, E; Terhal, P; Casaer, P; Peters, A; Midro, A; Schollen, E; van Roozendaal, K; Moog, U; Matthijs, G; Herbergs, J; Smeets, H; Curfs, L; Schrander-Stumpel, C; Fryns, J P

    2005-01-15

    From a series of 107 females with Rett syndrome (RTT), we describe the long-term history of ten females with a deletion in the C-terminus of the MECP2 gene. We observed that their disorder profile is clinically recognizable with time and different from other atypical and milder RTT phenotypes. In females with hot spot deletions in the C-terminus, dystonia is present from childhood and results in a serious spine deformation in spite of preventive measures. Their adaptive behavior is surprisingly better preserved and in contrast with the typical decline in motor functioning. The delineation of disorder profiles by long-term clinical observation can teach us about genotype/phenotype relationships and eventually about the effect of epigenetic phenomena on the final phenotype.

  10. Bioavailable dissolved organic matter and biological hot spots during austral winter in Antarctic waters

    NASA Astrophysics Data System (ADS)

    Shen, Yuan; Benner, Ronald; Murray, Alison E.; Gimpel, Carla; Greg Mitchell, B.; Weiss, Elliot L.; Reiss, Christian

    2017-01-01

    Primary production and heterotrophic bacterial activity in the Antarctic Ocean are generally low during the austral winter. Organic carbon is considered to be a major factor limiting bacterial metabolism, but few studies have investigated the bioavailability of organic matter during winter. Herein, the chemical composition and bioavailability of dissolved organic matter (DOM) were investigated in surface (5-100 m) and mesopelagic (200-750 m) waters off the northwestern Antarctic Peninsula during August 2012. Concentrations of dissolved organic carbon (DOC) were low (42 ± 4 µmol L-1) and showed no apparent spatial patterns. By contrast, the composition of DOM exhibited significant spatial trends that reflected varying ecosystem productivity and water masses. Surface distributions of chlorophyll-a and particulate organic carbon depicted a southward decline in primary productivity from open waters (60.0°S-61.5°S) to ice-covered regions (61.5°S-62.5°S). This trend was evident from concentrations and DOC-normalized yields of dissolved amino acids in the surface waters, indicating decreasing DOM bioavailability with increasing latitude. A different pattern of DOM bioavailability was observed in the mesopelagic water masses, where amino acids indicated highly altered DOM in the Circumpolar Deep Water and bioavailable DOM in the Transitional Weddell Water. Depth distributions of amino acid yields and compositions revealed hot spots of elevated bioavailable DOM at ˜75 m relative to surrounding waters at most ice-free stations. Relatively low mole percentages of bacterially derived D-amino acids in hot spots were consistent with an algal source of bioavailable DOM. Overall, these results reveal the occurrence and spatial heterogeneity of bioavailable substrates in Antarctic waters during winter.

  11. Nuclear Star Formation in the Hot-Spot Galaxy NGC 2903

    NASA Technical Reports Server (NTRS)

    Alonso-Herrero, A.; Ryder, S. D.; Knapen, J. H.

    1994-01-01

    We present high-resolution near-infrared imaging obtained using adaptive optics and HST/NICMOS and ground-based spectroscopy of the hot-spot galaxy NGC 2903. Our near-infrared resolution imaging enables us to resolve the infrared hot spots into individual young stellar clusters or groups of these. The spatial distribution of the stellar clusters is not coincident with that of the bright H II regions, as revealed by the HST/NICMOS Pace image. Overall, the circumnuclear star formation in NGC 2903 shows a ring-like morphology with an approximate diameter of 625 pc. The SF properties of the stellar clusters and H II regions have been studied using the photometric and spectroscopic information in conjunction with evolutionary synthesis models. The population of bright stellar clusters shows a very narrow range of ages, 4 to 7 x 10(exp 6) yr after the peak of star formation, or absolute ages 6.5 to 9.5 x 10(exp 6) yr (for the assumed short-duration Gaussian bursts), and luminosities similar to the clusters found in the Antennae interacting galaxy. This population of young stellar clusters accounts for some 7 - 12% of the total stellar mass in the central 625 pc of NGC 2903. The H II regions in the ring of star formation have luminosities close to that of the super-giant H II region 30 Doradus, they are younger than the stellar clusters, and will probably evolve into bright infrared stellar clusters similar to those observed today. We find that the star formation efficiency in the central regions of NGC 2903 is higher than in normal galaxies, approaching the lower end of infrared luminous galaxies.

  12. VLBI OBSERVATIONS OF 10 COMPACT SYMMETRIC OBJECT CANDIDATES: EXPANSION VELOCITIES OF HOT SPOTS

    SciTech Connect

    An Tao; Wu Fang; Hong Xiaoyu; Wang Weihua; Chen Xi; Yang Jun; Taylor, Gregory B.; Baan, Willem A.; Liu Xiang; Wang Min; Hao Longfei; Cui Lang E-mail: an@astron.nl

    2012-01-01

    Observations of 10 Compact Symmetric Object (CSO) candidates have been made with the Very Long Baseline Array (VLBA) at 8.4 GHz in 2005 and with a combined Chinese and European Very Long Baseline Interferometry (VLBI) array at 8.4 GHz in 2009. The 2009 observations incorporate for the first time the two new Chinese telescopes at Miyun and Kunming for international astrophysical observations. The observational data, in combination with archival VLBA data from previous epochs, have been used to derive the proper motions of the VLBI components. Because of the long time baseline of {approx}16 years of the VLBI data sets, the expansion velocities of the hot spots can be measured at an accuracy as high as {approx}1.3 {mu}as yr{sup -1}. Six of the ten sources are identified as CSOs with a typical double or triple morphology on the basis of both spectral index maps and their mirror symmetry of proper motions of the terminal hot spots. The compact double source J1324+4048 is also identified as a CSO candidate. Among the three remaining sources, J1756+5748 and J2312+3847 are identified as core-jet sources with proper motions of their jet components relating to systemic source expansion. The third source J0017+5312 is likely also a core-jet source, but a robust detection of a core is needed for an unambiguous identification. The kinematic ages of the CSOs derived from proper motions range from 300 to 2500 years. The kinematic age distribution of the CSOs confirm an overabundance of compact young CSOs with ages less than 500 years. CSOs with known kinematic ages may be used to study the dynamical evolution of extragalactic radio sources at early stages.

  13. Causes of hot-spot wetland loss in the Mississippi delta plain

    USGS Publications Warehouse

    Morton, R.A.; Tiling, G.; Ferina, N.F.

    2003-01-01

    Field surveys and sediment cores were used to estimate marsh erosion and land subsidence at Madison Bay, a well-known wetland loss hot spot in coastal Louisiana. Former marshes of Madison Bay are under about 1 m of water. Nearly two-thirds of the permanent flooding was caused by rapid subsidence in the late 1960s, whereas the other third was caused by subsequent erosion. Subsidence rates near Madison Bay since the 1960s (???20 mm/yr) are an order of magnitude greater than deltaic subsidence rates averaged for the past 400-4000 yr (???2 mm/yr). The rapid acceleration and unexpected decline in wetland losses in the Mississippi delta plain are difficult to explain on the basis of most physical and biogeochemical processes. There are, however, close temporal and spatial correlations among regional wetland loss, high subsidence rates, and large-volume fluid production from nearby hydrocarbon fields. The decreased rates of wetland loss since the 1970s may be related to decreased rates of subsidence caused by significantly decreased rates of subsurface fluid withdrawal. Annual fluid production from the Lapeyrouse, Lirette, and Bay Baptiste fields that encompass Madison Bay accelerated in the 1960s, peaked about 1970, and then declined abruptly. Large decreases in pore pressure in the Lapeyrouse field have likely altered subsurface stresses and reactivated a major fault that coincides with the wetland loss hot spot. Therefore, wetland losses at Madison Bay can be closely linked to rapid subsidence and possible fault reactivation induced by long-term, large-volume hydrocarbon production. ?? 2003. The American Association of Petroleum Geologists/Division of Environmental Geosciences. All rights reserved.

  14. Demonstration of Fuel Hot-Spot Pressure in Excess of 50 Gbar for Direct-Drive, Layered Deuterium-Tritium Implosions on OMEGA.

    PubMed

    Regan, S P; Goncharov, V N; Igumenshchev, I V; Sangster, T C; Betti, R; Bose, A; Boehly, T R; Bonino, M J; Campbell, E M; Cao, D; Collins, T J B; Craxton, R S; Davis, A K; Delettrez, J A; Edgell, D H; Epstein, R; Forrest, C J; Frenje, J A; Froula, D H; Gatu Johnson, M; Glebov, V Yu; Harding, D R; Hohenberger, M; Hu, S X; Jacobs-Perkins, D; Janezic, R; Karasik, M; Keck, R L; Kelly, J H; Kessler, T J; Knauer, J P; Kosc, T Z; Loucks, S J; Marozas, J A; Marshall, F J; McCrory, R L; McKenty, P W; Meyerhofer, D D; Michel, D T; Myatt, J F; Obenschain, S P; Petrasso, R D; Radha, P B; Rice, B; Rosenberg, M J; Schmitt, A J; Schmitt, M J; Seka, W; Shmayda, W T; Shoup, M J; Shvydky, A; Skupsky, S; Solodov, A A; Stoeckl, C; Theobald, W; Ulreich, J; Wittman, M D; Woo, K M; Yaakobi, B; Zuegel, J D

    2016-07-08

    A record fuel hot-spot pressure P_{hs}=56±7  Gbar was inferred from x-ray and nuclear diagnostics for direct-drive inertial confinement fusion cryogenic, layered deuterium-tritium implosions on the 60-beam, 30-kJ, 351-nm OMEGA Laser System. When hydrodynamically scaled to the energy of the National Ignition Facility, these implosions achieved a Lawson parameter ∼60% of the value required for ignition [A. Bose et al., Phys. Rev. E 93, 011201(R) (2016)], similar to indirect-drive implosions [R. Betti et al., Phys. Rev. Lett. 114, 255003 (2015)], and nearly half of the direct-drive ignition-threshold pressure. Relative to symmetric, one-dimensional simulations, the inferred hot-spot pressure is approximately 40% lower. Three-dimensional simulations suggest that low-mode distortion of the hot spot seeded by laser-drive nonuniformity and target-positioning error reduces target performance.

  15. Probing the Hawaiian Hot Spot With New Broadband Ocean Bottom Instruments

    NASA Astrophysics Data System (ADS)

    Laske, Gabi; Collins, John A.; Wolfe, Cecily J.; Solomon, Sean C.; Detrick, Robert S.; Orcutt, John A.; Bercovici, David; Hauri, Erik H.

    2009-10-01

    The Hawaiian hot spot is regarded as the textbook example of the product of a deep-rooted mantle plume [Wilson, 1963; Morgan, 1971]. Its isolated location, far from any plate boundary, should provide an opportunity to test most basic hypotheses on the nature of plume-plate interaction and related magmatism [e.g., Ribe and Christensen, 1999]. Yet the lack of crucial geophysical data has sustained a debate about whether Hawaii's volcanism is plume-related or is instead the consequence of more shallow processes, such as the progressive fracturing of the plate in response to extensional stresses [Turcotte and Oxburgh, 1973]. In the plume model for Hawaii's volcanism, hot material is expected to ascend near vertically within the more viscous surrounding mantle before ponding and spreading laterally beneath the rigid lithosphere. Mantle convection in general, and the fast moving Pacific plate in particular, shear and tilt the rising plume. The plume top is dragged downstream by the plate, and this dragged material may give rise to an elongated bathymetric swell [Davies, 1988; Olson, 1990; Sleep, 1990; Phipps Morgan et al., 1995]. However, identifying the dominant cause of the swell remains elusive, and proposed mechanisms include thermal rejuvenation, dynamic support, compositional buoyancy, and mechanical erosion (see Li et al. [2004] for a summary). There is also considerable debate about the continuity of the plume within the mantle, how discrete islands are formed, and how a deep-rooted plume interacts with the mantle transition zone [e.g., van Keken and Gable, 1995].

  16. Nanopatterning and Hot Spot Modeling of YBCO Ultrathin Film Constrictions for THz Mixers

    NASA Astrophysics Data System (ADS)

    Ladret, Romain G.; Degardin, Annick F.; Kreisler, Alain J.

    2013-06-01

    High-TC hot electron bolometers (HEB) are promising THz mixers due to their expected wide bandwidth, large mixing gain, and low intrinsic noise. To achieve this goal, 0.6-μm-size constrictions were patterned on YBaCuO-based, 10-40-nm-thick films grown on (100) MgO substrates, which as previously reported, exhibited good DC superconducting properties. In this paper, we have simulated the DC and mixer characteristics of YBaCuO HEBs with a hot spot model usually dedicated to low-TC devices. For a 100 nm × 100 nm × 10 nm constriction, the expected double sideband noise temperature TN is 2000 K for 5 μW local oscillator (LO) power (G = -13.5 dB conversion gain). For a larger (but more realistic according to YBaCuO aging effects) 600 nm × 1000 nm × 35 nm constriction, TN = 1300 K at 200 μW LO power (G = -12 dB). This approach is expected to allow optimizing the operation of the HEB constriction coupled to a THz planar antenna.

  17. 40 CFR 93.123 - Procedures for determining localized CO, PM10, and PM2.5 concentrations (hot-spot analysis).

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 40 Protection of Environment 20 2014-07-01 2013-07-01 true Procedures for determining localized CO... Transit Laws § 93.123 Procedures for determining localized CO, PM10, and PM2.5 concentrations (hot-spot analysis). (a) CO hot-spot analysis. (1) The demonstrations required by § 93.116 (“Localized CO, PM10,...

  18. INVESTIGATION OF "HOT-SPOTS" AS A FUNCTION OF MATERIAL REMOVAL IN A LARGE-GRAIN NIOBIUM CAVITY

    SciTech Connect

    Gianluigi Ciovati; Peter Kneisel

    2006-08-21

    Poster - The performance of a single-cell cavity made of RRR > 200 large-grain niobium has been investigated as a function of material removal by buffered chemical polishing. Temperature maps of the cavity surface at 1.7 and 2.0 K were taken for each step of chemical etching and revealed several 'hot-spots', which contribute to the degradation of the cavity quality factor as a function of the RF surface field, mostly at high field levels. It was found that the number of 'hot-spots' decreased for larger material removal. Interestingly, the losses of the 'hot-spots' at different locations evolved differently for successive material removal. The cavity achieved peak surface magnetic fields of about of 130 mT and was limited mostly by thermal quench. By measuring the temperature dependence of the surface resistance at low field between 4.2 K and 1.7 K, the variation of niobium material parameters as a function of material removal could also be investigated. This contribution shows the results of the RF tests along with the temperature maps and the analysis of the losses caused by the 'hot-spots'.

  19. The Cobb hot spot: HIMU-DMM mixing and melting controlled by a progressively thinning lithospheric lid

    NASA Astrophysics Data System (ADS)

    Chadwick, John; Keller, Randall; Kamenov, George; Yogodzinski, Gene; Lupton, John

    2014-08-01

    Cobb Seamount Chain in the northeast Pacific basin records the composition of the Cobb hot spot for the past 33 Myr, as the migrating Juan de Fuca Ridge approached and ultimately overran it ca. 0.5 Myr ago. In this first comprehensive geochemical study of the Cobb chain, major and trace element compositions and Sr, Nd, Pb, and Hf isotopic ratios were measured for whole-rock samples from throughout the chain, and He isotopes were acquired for olivine phenocrysts from one seamount. Trace element modeling indicates increased melting along the chain over time, with progressively more depleted lavas as the ridge approached the hot spot. The isotopic data reveal the first evidence of the high µ (µ = 238U/204Pb) (HIMU) mantle component in the north Pacific basin and are consistent with a progressively decreasing mixing proportion of HIMU melts relative to those from depleted mid-ocean ridge basalt mantle (DMM) in the chain over time. Decreasing lithospheric thickness over the Cobb hot spot due to the approach of the migrating Juan de Fuca ridge allowed adiabatic melting to continue to shallower depths, leading to increased melt fractions of the refractory DMM component in the hot spot and more depleted and MORB-like lavas in the younger Cobb seamounts.

  20. Effect of width, amplitude, and position of a core mantle boundary hot spot on core convection and dynamo action

    NASA Astrophysics Data System (ADS)

    Dietrich, Wieland; Wicht, Johannes; Hori, Kumiko

    2015-12-01

    Within the fluid iron cores of terrestrial planets, convection and the resulting generation of global magnetic fields are controlled by the overlying rocky mantle. The thermal structure of the lower mantle determines how much heat is allowed to escape the core. Hot lower mantle features, such as the thermal footprint of a giant impact or hot mantle plumes, will locally reduce the heat flux through the core mantle boundary (CMB), thereby weakening core convection and affecting the magnetic field generation process. In this study, we numerically investigate how parametrised hot spots at the CMB with arbitrary sizes, amplitudes, and positions affect core convection and hence the dynamo. The effect of the heat flux anomaly is quantified by changes in global flow symmetry properties, such as the emergence of equatorial antisymmetric, axisymmetric (EAA) zonal flows. For purely hydrodynamic models, the EAA symmetry scales almost linearly with the CMB amplitude and size, whereas self-consistent dynamo simulations typically reveal either suppressed or drastically enhanced EAA symmetry depending mainly on the horizontal extent of the heat flux anomaly. Our results suggest that the length scale of the anomaly should be on the same order as the outer core radius to significantly affect flow and field symmetries. As an implication to Mars and in the range of our model, the study concludes that an ancient core field modified by a CMB heat flux anomaly is not able to heterogeneously magnetise the crust to the present-day level of north-south asymmetry on Mars. The resulting magnetic fields obtained using our model either are not asymmetric enough or, when they are asymmetric enough, show rapid polarity inversions, which are incompatible with thick unidirectional magnetisation.

  1. Hot spot formation of chloroform in forest soils caused pollution of groundwater

    NASA Astrophysics Data System (ADS)

    Jacobsen, Ole S.; Albers, Christian N.; Laier, Troels; Hunkeler, Daniel

    2015-04-01

    High concentration of chloroform in groundwater is usually attributed to anthropogenic input, but we have found that the groundwater beneath some pristine areas contained chloroform from 1 - 10 µg/L. Groundwater containing chloroform that exceeds 1 µg/L could not be used for drinking water according to Danish regulations. The strict demands on groundwater quality may have to be taken into account when decisions are made regarding the change of land use in order to protect major recharge areas from pollution with nitrate and pesticides resulting from high-yield agriculture production. The terrestrial environment and especially hot spots in forest soils seem to be important contributors to apparent pollution of groundwater with chloroform. We performed a field study to investigate concentration and fluxes of chloroform to the groundwater from in four coniferous forests in order to increase knowledge on the hot spot formation and fate of natural chloroform. We investigated four stations over a period of several years in order to measure the net-formation of chloroform. Field measurements soil air concentrations of chloroform were monitored in five soil profiles down to the groundwater table. Meteorological data were recorded at all stations In the hotspots up to 120 ppbv was found in soil air under the spruce forest, to be compared to an ambient atmospheric concentration of 0.02 ppbv. The concentration of chloroform in soil air showed seasonal variation with a maximum in August-September. The chloroform concentration decreased with depth in all profiles during the summer half-year to about 20 % of concentration in the production layer. However, the concentration is still high enough to give an equilibrium concentration in the upper groundwater of 1-10 µg/L. Stable carbon isotopic analyses of chloroform from the uppermost groundwater in different parts of the forests and from soil water showed values from δ13C = -13 ‰ to -27 ‰, corresponding to the ratio in

  2. Effects of high shock pressures and pore morphology on hot spot mechanisms in HMX

    NASA Astrophysics Data System (ADS)

    Springer, H. K.; Tarver, C. M.; Bastea, S.

    2017-01-01

    The shock initiation and detonation behavior of heterogeneous solid explosives is governed by its microstructure and reactive properties. New additive manufacturing techniques offer unprecedented control of explosive microstructures previously impossible, enabling us to develop novel explosives with tailored shock sensitivity and detonation properties. Since microstructure-performance relationships are not well established for explosives, there is little material design guidance for these manufacturing techniques. In this study, we explore the effects of high shock pressures (15-38 GPa) with long shock durations and different pore morphologies on hot spot mechanisms in HMX. HMX is chosen as the model material because we have experimental data on many of the chemical-thermal-mechanical properties required for pore collapse simulations. Our simulations are performed using the multi-physics arbitrary Lagrangian Eulerian finite element hydrocode, ALE3D, with Cheetah-based models for the unreacted and the product equation-of-states. We use a temperature-dependent specific heat with the unreacted equation-of-state and a temperature-dependent viscosity model to ensure accurate shock temperatures for subsequent chemistry. The Lindemann Law model is used for shock melting in HMX. In contrast to previous pore collapse studies at lower shock pressures (≤10 GPa) in HMX and shorter post-collapse burning times, our calculations show that shock melting occurs above 15 GPa due to higher bulk heating and a prominent elongated ("jet-like") hot spot region forms at later times. The combination of the elongated, post-collapse hot spot region and the higher bulk heating with increasing pressure dramatically increases the growth rate of reaction. Our calculations show that the reaction rate, dF/dt, increases with increasing shock pressure. We decompose the reaction rate into ignition ((dF/dt)ig) and growth ((dF/dt)gr) phases to better analyze our results. We define the ignition phase

  3. The presence of traces of iron and copper ions during gamma-irradiation does not result in clear mutational hot spots in the lacI gene.

    PubMed

    Wijker, C A; Lafleur, M V

    1999-08-11

    Oxidative radicals, which are produced during ionizing irradiation of DNA in water, damage the DNA and may result in mutations, which are in general randomly distributed. Alternatively, the addition of transition metal ions, like iron or copper, to DNA in combination with H(2)O(2) and a reducing agent also results in the production of oxidative radicals. Due to binding of the transition metal ions to DNA, the production of these radicals is very local, and results in a mutational spectrum in which the mutations are not randomly distributed. If transition metal ions are complexed to the DNA during irradiation, and react with radiation-induced species such as hydrogen peroxide, site-specific formation of.OH radicals on these sites may occur, leading to the formation of mutational hot spots. This study examines the influence of the presence of traces of iron or copper ions during gamma-irradiation of plasmid DNA in water, on the possible formation of mutational hot spots in the lacI gene. Comparison of the mutational spectra, after irradiation in the presence or in the absence of transition metal ions, shows that there are indeed relatively more positions in the lacI gene where more than one mutation occurs, suggesting formation of mutational hot spots in the presence of transition metal ions. However, the appearance of these hot spots is rather weak. Although in all three mutational spectra G:C to A:T mutations are predominant, there are also some differences between the types of mutations in these spectra. These differences in mutational spectra might reflect the different preferences of iron and copper ions to bind specific sites in the DNA. Indeed, there appears to be a high association of mutations at CC or GG sites in the mutational spectrum in the presence of copper ions, confirming the observation that copper binds preferably at two adjacent guanines in the DNA. It can be concluded from this study that the presence of small amounts of transition metal ions

  4. Seismic structure of Cocos and Malpelo Volcanic Ridges and implications for hot spot-ridge interaction

    NASA Astrophysics Data System (ADS)

    SallarèS, Valentí; Charvis, Philippe; Flueh, Ernst R.; Bialas, Joerg

    2003-12-01

    The Cocos and Malpelo Volcanic Ridges are blocks of thickened oceanic crust thought to be the result of the interaction between the Galapagos hot spot and the Cocos-Nazca Spreading Center during the last 20 m.y. In this work we investigate the seismic structure of these two aseismic ridges along three wide-angle transects acquired during the Panama basin and Galapagos plume—New Investigations of Intraplate magmatism (PAGANINI)-1999 experiment. A two-dimensional velocity field with the Moho geometry is obtained using joint refraction/reflection travel time tomography, and the uncertainty and robustness of the results are estimated by performing a Monte Carlo-type analysis. Our results show that the maximum crustal thickness along these profiles ranges from ˜16.5 km (southern Cocos) to ˜19 km (northern Cocos and Malpelo). Oceanic layer 2 thickness is quite uniform regardless of total crustal thickness variations; crustal thickening is mainly accommodated by layer 3. These observations are shown to be consistent with gravity data. The variation of layer 3 velocities is similar along all profiles, being lower where crust is thicker. This leads to an overall anticorrelation between crustal thickness and bulk lower crustal velocity. Since this anticorrelation is contrary to crustal thickening resulting from passive upwelling of abnormally hot mantle, it is necessary to consider active upwelling components and/or some compositional heterogeneities in the mantle source. The NW limit of the Malpelo Ridge shows a dramatic crustal thinning and displays high lower crustal velocities and a poorly defined crust-mantle boundary, suggesting that differential motion along the Coiba transform fault probably separated Regina and Malpelo Ridges.

  5. The structure of HIV-1 genomic RNA in the gp120 gene determines a recombination hot spot in vivo.

    PubMed

    Galetto, Román; Moumen, Abdeladim; Giacomoni, Véronique; Véron, Michel; Charneau, Pierre; Negroni, Matteo

    2004-08-27

    By frequently rearranging large regions of the genome, genetic recombination is a major determinant in the plasticity of the human immunodeficiency virus type I (HIV-1) population. In retroviruses, recombination mostly occurs by template switching during reverse transcription. The generation of retroviral vectors provides a means to study this process after a single cycle of infection of cells in culture. Using HIV-1-derived vectors, we present here the first characterization and estimate of the strength of a recombination hot spot in HIV-1 in vivo. In the hot spot region, located within the C2 portion of the gp120 envelope gene, the rate of recombination is up to ten times higher than in the surrounding regions. The hot region corresponds to a previously identified RNA hairpin structure. Although recombination breakpoints in vivo cluster in the top portion of the hairpin, the bias for template switching in this same region appears less marked in a cell-free system. By modulating the stability of this hairpin we were able to affect the local recombination rate both in vitro and in infected cells, indicating that the local folding of the genomic RNA is a major parameter in the recombination process. This characterization of reverse transcription products generated after a single cycle of infection provides insights in the understanding of the mechanism of recombination in vivo and suggests that specific regions of the genome might be prompted to yield different rates of evolution due to the presence of circumscribed recombination hot spots.

  6. Demonstration of 55 +/- 7-Gbar Hot-Spot Pressure in Direct-Drive Layered DT Cryogenic Implosions on OMEGA

    NASA Astrophysics Data System (ADS)

    Regan, S. P.

    2015-11-01

    Direct-drive ignition target designs for the National Ignition Facility (NIF) require hot-spot pressures in excess of 100 Gbar. Only one-third of the required pressure was inferred in earlier experimental campaigns conducted on the 60-beam, 30-kJ, 351-nm OMEGA laser with direct-drive implosions of layered DT cryogenic targets. Laser and target improvements were implemented on OMEGA to increase the stagnation pressure, including a set of phase plates to increase the laser irradiation uniformity on target and a purified fuel with isotope composition reaching a 50:50 DT ratio. Diagnostic improvements were made for a neutron burnwidth measurement with a 40-ps impulse response and a 16-channel Kirkpatrick-Baez microscope to measure gated (30-ps) x-ray images of the core near peak compression with 6- μm resolution. The inferred volume-averaged, peak pressure in the current campaign almost doubled to 55 +/- 7 Gbar with a neutron yield approaching 5 ×1013 . Further target performance improvements to reach hydrodynamic equivalence to ignition on OMEGA require mitigation of cross-beam energy transfer (CBET), which reduces the laser coupling. A proposed technique to reduce CBET by driving the spherical target with overlapping laser beams having individual focal spots smaller than the outside diameter of the target was investigated. The diameter of the target was discretely varied from 800 to 1000 μm, while the laser focal spot size was kept constant at 820 μm. The larger targets driven with up to 30 kJ of laser energy used dynamic bandwidth reduction, where the smoothing by spectral dispersion (SSD) is only applied to the pickets. The smaller targets driven with 26 kJ of laser energy had SSD on the entire pulse. This talk will summarize the results of this CBET mitigation campaign and describe a path forward to achieve ignition hydro-equivalence on OMEGA. This material is based upon work supported by the Department of Energy National Nuclear Security Administration under

  7. Volcanic hot spot detection from optical multispectral remote sensing data using artificial neural networks

    NASA Astrophysics Data System (ADS)

    Piscini, Alessandro; Lombardo, Valerio

    2014-03-01

    This paper describes an application of artificial neural networks for the recognition of volcanic lava flow hot spots using remote sensing data. Satellite remote sensing is a very effective and safe way to monitor volcanic eruptions in order to safeguard the environment and the people affected by such natural hazards. Neural networks are an effective and well-established technique for the classification of satellite images. In addition, once well trained, they prove to be very fast in the application stage. In our study a back propagation neural network was used for the recognition of thermal anomalies affecting hot lava pixels. The network was trained using the three thermal channels of the Advanced Very High Resolution Radiometer (AVHRR) sensor as inputs and the corresponding values of heat flux, estimated using a two thermal component model, as reference outputs. As a case study the volcano Etna (Eastern Sicily, Italy) was chosen, and in particular the effusive eruption which took place during the month of 2006 July. The neural network was trained with a time-series of 15 images (12 nighttime images and 3 daytime images) and validated on three independent data sets of AVHRR images of the same eruption and on two relative to an eruption occurred the following month. While for both nighttime and daytime validation images the neural network identified the image pixels affected by hot lava with a 100 per cent success rate, for the daytime images also adjacent pixels were included, apparently not interested by lava flow. Despite these performance differences under different illumination conditions, the proposed method can be considered effective both in terms of classification accuracy and generalization capability. In particular our approach proved to be robust in the rejection of false positives, often corresponding to noisy or cloudy pixels, whose presence in multispectral images can often undermine the performance of traditional classification algorithms. Future

  8. New Caledonia: A 'Hot Spot' for Valuable Chemodiversity. Part 1: Gymnosperms.

    PubMed

    Coulerie, Paul; Poullain, Cyril

    2015-06-01

    The flora of New Caledonia encompasses more than 3,000 species and almost 80% of them are endemic. New Caledonia is considered as a 'hot spot' for biodiversity. With the current global loss of biodiversity, and the fact that several drugs and pesticides are becoming obsolete, there is an urgent need to increase sampling and research on new natural products. In this context, we review the chemical information available on New Caledonian native flora from economical perspectives. We expect that a better knowledge of the economic potential will encourage the plantation of native plants for the development of a sustainable economy which will participate in the conservation of biodiversity. In the first part of this review, we discuss the results reported in 18 scientific articles on the chemicals isolated from 23 endemic conifers of New Caledonia. Several bioactive and original products, such as neocallitropsene or libocedrins, have been isolated from these conifers. This review also highlights several groups, such as Podocarpus spp., that are unexplored in New Caledonia despite the fact that they have been described in other countries to contain a wide range of original bioactive compounds. Those plants are considered as priority for future chemical investigations.

  9. New Caledonia: A Hot Spot for Valuable Chemodiversity Part 3: Santalales, Caryophyllales, and Asterids.

    PubMed

    Coulerie, Paul; Poullain, Cyril

    2016-04-01

    The flora of New Caledonia encompasses more than 3000 plant species and an endemism of almost 80%. New Caledonia is even considered as one of the 34 'hot spots' for biodiversity. Considering the current global loss of biodiversity and the fact that several drugs and pesticides become obsolete, there is an urgent need to increase sampling and research on new natural products. In this context, here, we reviewed the chemical knowledge available on New Caledonian native flora from economical perspectives. We expect that a better knowledge of the economic potential of plant chemistry will encourage the plantation of native plants for the development of a sustainable economy which will participate in the conservation of biodiversity. This review is divided into three parts, and the third part which is presented here summarizes the scientific literature related to the chemistry of endemic santalales, caryophyllales, and asterids. We show that the high rate of endemism is correlated with the originality of phytochemicals encountered in New Caledonian plants. A total of 176 original natural compounds have been identified from these plants, whereas many species have not been investigated so far. We also discuss the economic potential of plants and molecules with consideration of their medicinal and industrial perspectives. This review finally highlights several groups, such as Sapotaceae, that are unexplored in New Caledonia despite the high chemical interest in them. These plants are considered to have priority in future chemical investigations.

  10. Thermal windows on the trunk of hauled-out seals: hot spots for thermoregulatory evaporation?

    PubMed

    Mauck, Björn; Bilgmann, Kerstin; Jones, Daryl D; Eysel, Ulf; Dehnhardt, Guido

    2003-05-01

    Seals have adapted to the high heat transfer coefficient in the aquatic environment by effective thermal insulation of the body core. While swimming and diving, excess metabolic heat is supposed to be dissipated mainly over the sparsely insulated body appendages, whereas the location of main heat sinks in hauled-out seals remains unclear. Here, we demonstrate thermal windows on the trunk of harbour seals, harp seals and a grey seal examined under various ambient temperatures using infrared thermography. Thermograms were analysed for location, size and development of thermal windows. Thermal windows were observed in all experimental sessions, shared some common characteristics in all seals and tended to reappear in similar body sites of individual seals. Nevertheless, the observed variations in order and location of appearance, number, size and shape of thermal windows would imply no special anatomical site for this avenue of heat loss. Based on our findings, we suggest that, in hauled-out seals, heat may be transported by blood flow to a small area of the wet body surface where the elevation of temperature facilitates evaporation of water trapped within the seals' pelages due to increased saturation vapour pressure. The comparatively large latent heat necessary for evaporation creates a temporary hot spot for heat dissipation.

  11. The short arm of chromosome 11 is a "hot spot" for hypermethylation in human neoplasia.

    PubMed

    de Bustros, A; Nelkin, B D; Silverman, A; Ehrlich, G; Poiesz, B; Baylin, S B

    1988-08-01

    Inactivation of normally expressed genes may play a role in the formation and/or progression of human cancers. Methylation of cytosine in DNA could potentially participate in such alterations of gene expression. Abnormalities in DNA methylation are a consistent feature of human neoplasms, and we now show that these include not only previously recognized widespread genomic hypomethylation, but also regional increases in gene methylation. A hot spot for abnormal methylation of C + G-rich areas has been detected on the short arm of chromosome 11 in an area known to harbor tumor suppressor genes. This change occurs consistently in common forms of human cancer and appears early during the transformation of cells with viruses including members of the human T-cell leukemia (HTLV) family. Furthermore, in one chromosome 11 gene examined, calcitonin, the increased methylation in somatic tumor cells coincides with the presence of an "inactive" chromatin pattern in the transcriptional regulatory area. The increased regional DNA methylation demonstrated may then participate in or mark chromosomal changes associated with gene inactivation events that are central to the genesis and/or progression of human cancers.

  12. The short arm of chromosome 11 is a hot spot for hypermethylation in human neoplasia

    SciTech Connect

    De Bustros, A.; Nelkin, B.D.; Silverman, A.; Ehrlich, G.; Poiesz, B.; Baylin S.B. )

    1988-08-01

    Inactivation of normally expressed genes may play a role in the formation and/or progression of human cancers. Methylation of cytosine in DNA could potentially participate in such alterations of gene expression. Abnormalities in DNA methylation are a consistent feature of human neoplasms, and the authors now show that these include not only previously recognized widespread genomic hypomethylation, but also regional increases in gene methylation. A hot spot for abnormal methylation of C + G-rich areas has been detected on the short arm of chromosome 11 in an area known to harbor tumor suppressor genes. This change occurs consistently in common forms of human cancer and appears early during the transformation of cells with viruses including members of the human T-cell leukemia (HTLV) family. Furthermore, in one chromosome 11 gene examined, calcitonin, the increased methylation in somatic tumor cells coincides with the presence of an inactive chromatin pattern in the transcriptional regulatory area. The increased regional DNA methylation demonstrated may then participate in or mark chromosomal changes associated with gene inactivation events that are central to the genesis and/or progression of human cancers.

  13. A theoretical and experimental study of waste tank sludge rheology within a hot spot

    SciTech Connect

    Epstein, M.; Fauske, H.K.

    1994-12-31

    The conditions under which ferrocyanide waste sludge flows as a homogeneous non-Newtonian two-phase (solid precipitate-liquid) mixture rather than as a liquid through a porous medium (of stationary precipitate) are examined theoretically, based on the provisional idea that the preferred rheological behavior of the sludge is the one which imposes the least resistance to the sludge flow. The homogeneous two-phase mixture is modeled as a Bingham-like fluid and a simple criterion is derived that shows that the homogenous rheology (Bingham-like sludge-flow) is a much more likely flow situation than the porous medium model of sludge flow. Experiments have been carried out involving gas and vapor void growth in Kaolin particle- water mixtures and in synthetic ferrocyanide In Farm-1 flow sheet material. In all cases the hydrodynamic response of these simulant-sludge materials was clearly homogeneous, in agreement with the conclusion derived from the theoretical study. The implication of this finding is that the formation of a hot spot is not likely to result in the uncovering (drying) and subsequent potential overheating of the reactive-solid component of the sludge.

  14. Coincident ruddy turnstone migration and horseshoe crab spawning creates an ecological 'hot spot' for influenza viruses.

    PubMed

    Krauss, Scott; Stallknecht, David E; Negovetich, Nicholas J; Niles, Lawrence J; Webby, Richard J; Webster, Robert G

    2010-11-22

    Since 1985, avian influenza virus surveillance has been conducted annually from mid-May to early June in charadriiform species from the families Scolopacidae and Laridae (shorebirds and gulls) at Delaware Bay in the northeast United States. The mass migrations of shorebirds, gulls and horseshoe crabs (Limulus polyphemus) coincide at that time, and large numbers of migrating birds pause at Delaware Bay to feed on horseshoe crab eggs deposited at the high-tide line. Influenza viruses are consistently isolated from charadriiform birds at Delaware Bay, at an overall rate approximately 17 times the combined rate of isolation at all other surveillance sites worldwide (490 isolates/9474 samples, 5.2% versus 49 isolates per 15,848 samples, 0.3%, respectively; Proportion test, p < 0.0001). The likelihood of isolating influenza viruses at Delaware Bay is dependent on the presence of ruddy turnstone (Arenaria interpres) at the sampling site (G-test of independence, p < 0.001). The convergence of host factors and environmental factors results in a unique ecological 'hot spot' for influenza viruses in Charadriiformes.

  15. Models of lithosphere and asthenosphere anisotropic structure of the Yellowstone hot spot from shear wave splitting

    USGS Publications Warehouse

    Waite, G.P.; Schutt, D.L.; Smith, R.B.

    2005-01-01

    Teleseismic shear wave splitting measured at 56 continuous and temporary seismographs deployed in a 500 km by 600 km area around the Yellowstone hot spot indicates that fast anisotropy in the mantle is parallel to the direction of plate motion under most of the array. The average split time from all stations of 0.9 s is typical of continental stations. There is little evidence for plume-induced radial strain, suggesting that any contribution of gravitationally spreading plume material is undetectably small with respect to the plate motion velocity. Two stations within Yellowstone have splitting measurements indicating the apparent fast anisotropy direction (??) is nearly perpendicular to plate motion. These stations are ???30 km from stations with ?? parallel to plate motion. The 70?? rotation over 30 km suggests a shallow source of anisotropy; however, split times for these stations are more than 2 s. We suggest melt-filled, stress-oriented cracks in the lithosphere are responsible for the anomalous ?? orientations within Yellowstone. Stations southeast of Yellowstone have measurements of ?? oriented NNW to WNW at high angles to the plate motion direction. The Archean lithosphere beneath these stations may have significant anisotropy capable of producing the observed splitting. Copyright 2005 by the American Geophysical Union.

  16. Sulfur oxidizers dominate carbon fixation at a biogeochemical hot spot in the dark ocean

    PubMed Central

    Mattes, Timothy E; Nunn, Brook L; Marshall, Katharine T; Proskurowski, Giora; Kelley, Deborah S; Kawka, Orest E; Goodlett, David R; Hansell, Dennis A; Morris, Robert M

    2013-01-01

    Bacteria and archaea in the dark ocean (>200 m) comprise 0.3–1.3 billion tons of actively cycled marine carbon. Many of these microorganisms have the genetic potential to fix inorganic carbon (autotrophs) or assimilate single-carbon compounds (methylotrophs). We identified the functions of autotrophic and methylotrophic microorganisms in a vent plume at Axial Seamount, where hydrothermal activity provides a biogeochemical hot spot for carbon fixation in the dark ocean. Free-living members of the SUP05/Arctic96BD-19 clade of marine gamma-proteobacterial sulfur oxidizers (GSOs) are distributed throughout the northeastern Pacific Ocean and dominated hydrothermal plume waters at Axial Seamount. Marine GSOs expressed proteins for sulfur oxidation (adenosine phosphosulfate reductase, sox (sulfur oxidizing system), dissimilatory sulfite reductase and ATP sulfurylase), carbon fixation (ribulose-1,5-bisphosphate carboxylase oxygenase (RuBisCO)), aerobic respiration (cytochrome c oxidase) and nitrogen regulation (PII). Methylotrophs and iron oxidizers were also active in plume waters and expressed key proteins for methane oxidation and inorganic carbon fixation (particulate methane monooxygenase/methanol dehydrogenase and RuBisCO, respectively). Proteomic data suggest that free-living sulfur oxidizers and methylotrophs are among the dominant primary producers in vent plume waters in the northeastern Pacific Ocean. PMID:23842654

  17. The Greenland Ice Sheet as a hot spot of phosphorus weathering and export in the Arctic

    NASA Astrophysics Data System (ADS)

    Hawkings, Jon; Wadham, Jemma; Tranter, Martyn; Telling, Jon; Bagshaw, Elizabeth; Beaton, Alexander; Simmons, Sarah-Louise; Chandler, David; Tedstone, Andrew; Nienow, Peter

    2016-02-01

    The contribution of ice sheets to the global biogeochemical cycle of phosphorus is largely unknown, due to the lack of field data. Here we present the first comprehensive study of phosphorus export from two Greenland Ice Sheet glaciers. Our results indicate that the ice sheet is a hot spot of phosphorus export in the Arctic. Soluble reactive phosphorus (SRP) concentrations, up to 0.35 µM, are similar to those observed in Arctic rivers. Yields of SRP are among the highest in the literature, with denudation rates of 17-27 kg P km-2 yr-1. Particulate phases, as with nonglaciated catchments, dominate phosphorus export (>97% of total phosphorus flux). The labile particulate fraction differs between the two glaciers studied, with significantly higher yields found at the larger glacier (57.3 versus 8.3 kg P km-2 yr-1). Total phosphorus yields are an order of magnitude higher than riverine values reported in the literature. We estimate that the ice sheet contributes ~15% of total bioavailable phosphorus input to the Arctic oceans (~11 Gg yr-1) and dominates total phosphorus input (408 Gg yr-1), which is more than 3 times that estimated from Arctic rivers (126 Gg yr-1). We predict that these fluxes will rise with increasing ice sheet freshwater discharge in the future.

  18. A Machine Learning Approach for Hot-Spot Detection at Protein-Protein Interfaces

    PubMed Central

    Melo, Rita; Fieldhouse, Robert; Melo, André; Correia, João D. G.; Cordeiro, Maria Natália D. S.; Gümüş, Zeynep H.; Costa, Joaquim; Bonvin, Alexandre M. J. J.; Moreira, Irina S.

    2016-01-01

    Understanding protein-protein interactions is a key challenge in biochemistry. In this work, we describe a more accurate methodology to predict Hot-Spots (HS) in protein-protein interfaces from their native complex structure compared to previous published Machine Learning (ML) techniques. Our model is trained on a large number of complexes and on a significantly larger number of different structural- and evolutionary sequence-based features. In particular, we added interface size, type of interaction between residues at the interface of the complex, number of different types of residues at the interface and the Position-Specific Scoring Matrix (PSSM), for a total of 79 features. We used twenty-seven algorithms from a simple linear-based function to support-vector machine models with different cost functions. The best model was achieved by the use of the conditional inference random forest (c-forest) algorithm with a dataset pre-processed by the normalization of features and with up-sampling of the minor class. The method has an overall accuracy of 0.80, an F1-score of 0.73, a sensitivity of 0.76 and a specificity of 0.82 for the independent test set. PMID:27472327

  19. Breakdown into nanoscale of graphene oxide: Confined hot spot atomic reduction and fragmentation

    NASA Astrophysics Data System (ADS)

    Gonçalves, Gil; Vila, Mercedes; Bdikin, Igor; de Andrés, Alicia; Emami, Nazanin; Ferreira, Rute A. S.; Carlos, Luís D.; Grácio, José; Marques, Paula A. A. P.

    2014-10-01

    Nano-graphene oxide (nano-GO) is a new class of carbon based materials being proposed for biomedical applications due to its small size, intrinsic optical properties, large specific surface area, and easy to functionalize. To fully exploit nano-GO properties, a reproducible method for its production is of utmost importance. Herein we report, the study of the sequential fracture of GO sheets onto nano-GO with controllable lateral width, by a simple, and reproducible method based on a mechanism that we describe as a confined hot spot atomic fragmentation/reduction of GO promoted by ultrasonication. The chemical and structural changes on GO structure during the breakage were monitored by XPS, FTIR, Raman and HRTEM. We found that GO sheets starts breaking from the defects region and in a second phase through the disruption of carbon bonds while still maintaining crystalline carbon domains. The breaking of GO is accompanied by its own reduction, essentially by the elimination of carboxylic and carbonyl functional groups. Photoluminescence and photothermal studies using this nano-GO are also presented highlighting the potential of this nanomaterial as a unique imaging/therapy platform.

  20. Western U.S. Infrasonic Catalog: Illuminating infrasonic hot spots with the USArray

    NASA Astrophysics Data System (ADS)

    Walker, Kristoffer T.; Shelby, Richard; Hedlin, Michael A. H.; de Groot-Hedlin, Catherine; Vernon, Frank

    2011-12-01

    In this study reverse time migration is applied to signals recorded by the 2007-08 USArray, presumably due to acoustic-to-seismic coupling, to detect and locate in two-dimensional space and time 901 sources of atmospheric infrasound, defining the Western United States Infrasonic Catalog (WUSIC). The detections are visually inspected and ranked. Uncertainties are estimated using a bootstrap technique. The method correctly locates most rocket motor detonations in Utah and a bolide explosion in Oregon with an average spatial accuracy of 50 km and 25 km, respectively. The origin time statistics for 2007 and 2008 events are nearly identical and suggest a predominant human origin. The event locations illuminate repeating sources of infrasound, or "infrasonic hot spots," in Nevada, Utah, and Idaho that are spatially associated with active military areas. The infrasonic arrivals comprise several branches that are observed to a range between 200 and 1500 km to the east and west of the epicenter in the winter and summer, respectively. The optimum group velocities are Gaussian distributed and centered at 295 m/s. A seasonal variation in optimum group velocities exhibits good correlation with atmospheric temperature. The results show that relatively dense seismic networks fill in the gaps between sparsely located infrasound arrays and provide valuable information for regional infrasonic source location and propagation studies. Specifically, the catalogs presented here can be used to statistically validate and improve propagation models, especially above the middle stratosphere where winds are not directly measured by ground-based weather stations or meteorological satellites.

  1. A Machine Learning Approach for Hot-Spot Detection at Protein-Protein Interfaces.

    PubMed

    Melo, Rita; Fieldhouse, Robert; Melo, André; Correia, João D G; Cordeiro, Maria Natália D S; Gümüş, Zeynep H; Costa, Joaquim; Bonvin, Alexandre M J J; Moreira, Irina S

    2016-07-27

    Understanding protein-protein interactions is a key challenge in biochemistry. In this work, we describe a more accurate methodology to predict Hot-Spots (HS) in protein-protein interfaces from their native complex structure compared to previous published Machine Learning (ML) techniques. Our model is trained on a large number of complexes and on a significantly larger number of different structural- and evolutionary sequence-based features. In particular, we added interface size, type of interaction between residues at the interface of the complex, number of different types of residues at the interface and the Position-Specific Scoring Matrix (PSSM), for a total of 79 features. We used twenty-seven algorithms from a simple linear-based function to support-vector machine models with different cost functions. The best model was achieved by the use of the conditional inference random forest (c-forest) algorithm with a dataset pre-processed by the normalization of features and with up-sampling of the minor class. The method has an overall accuracy of 0.80, an F1-score of 0.73, a sensitivity of 0.76 and a specificity of 0.82 for the independent test set.

  2. DIESEL TRUCK IDLING EMISSIONS - MEASUREMENTS AT A PM2.5 HOT SPOT

    SciTech Connect

    Parks, II, James E; Miller, Terry L.; Storey, John Morse; Fu, Joshua S.; Hromis, Boris

    2007-01-01

    The University of Tennessee and Oak Ridge National Laboratory conducted a 5-month long air monitoring study at the Watt Road interchange on I-40 in Knoxville Tennessee where there are 20,000 heavy-duty trucks per day traveling the interstate. In addition, there are 3 large truck stops at this interchange where as many as 400 trucks idle engines at night. As a result, high levels of PM2.5 were measured near the interchange often exceeding National Ambient Air Quality Standards. This paper presents the results of the air monitoring study illustrating the hourly, day-of-week, and seasonal patterns of PM2.5 resulting from diesel truck emissions on the interstate and at the truck stops. Surprisingly, most of the PM2.5 concentrations occurred during the night when the largest contribution of emissions was from idling trucks rather than trucks on the interstate. A nearby background air monitoring site was used to identify the contribution of regional PM2.5 emissions which also contribute significantly to the concentrations measured at the site. The relative contributions of regional background, local truck idling and trucks on the interstate to local PM2.5 concentrations are presented and discussed in the paper. The results indicate the potential significance of diesel truck idling emissions to the occurrence of hot-spots of high PM2.5 concentrations near large truck stops, ports or border crossings.

  3. Models of lithosphere and asthenosphere anisotropic structure of the Yellowstone hot spot from shear wave splitting

    NASA Astrophysics Data System (ADS)

    Waite, Gregory P.; Schutt, Derek L.; Smith, Robert B.

    2005-11-01

    Teleseismic shear wave splitting measured at 56 continuous and temporary seismographs deployed in a 500 km by 600 km area around the Yellowstone hot spot indicates that fast anisotropy in the mantle is parallel to the direction of plate motion under most of the array. The average split time from all stations of 0.9 s is typical of continental stations. There is little evidence for plume-induced radial strain, suggesting that any contribution of gravitationally spreading plume material is undetectably small with respect to the plate motion velocity. Two stations within Yellowstone have splitting measurements indicating the apparent fast anisotropy direction (ϕ) is nearly perpendicular to plate motion. These stations are ˜30 km from stations with ϕ parallel to plate motion. The 70° rotation over 30 km suggests a shallow source of anisotropy; however, split times for these stations are more than 2 s. We suggest melt-filled, stress-oriented cracks in the lithosphere are responsible for the anomalous ϕ orientations within Yellowstone. Stations southeast of Yellowstone have measurements of ϕ oriented NNW to WNW at high angles to the plate motion direction. The Archean lithosphere beneath these stations may have significant anisotropy capable of producing the observed splitting.

  4. Hot spot detection and spatio-temporal dynamics of dengue in Queensland, Australia

    NASA Astrophysics Data System (ADS)

    Naish, S.; Tong, S.

    2014-11-01

    Dengue has been a major public health concern in Australia since it re-emerged in Queensland in 1992-1993. This study explored spatio-temporal distribution and clustering of locally-acquired dengue cases in Queensland State, Australia and identified target areas for effective interventions. A computerised locally-acquired dengue case dataset was collected from Queensland Health for Queensland from 1993 to 2012. Descriptive spatial and temporal analyses were conducted using geographic information system tools and geostatistical techniques. Dengue hot spots were detected using SatScan method. Descriptive spatial analysis showed that a total of 2,398 locally-acquired dengue cases were recorded in central and northern regions of tropical Queensland. A seasonal pattern was observed with most of the cases occurring in autumn. Spatial and temporal variation of dengue cases was observed in the geographic areas affected by dengue over time. Tropical areas are potential high-risk areas for mosquito-borne diseases such as dengue. This study demonstrated that the locally-acquired dengue cases have exhibited a spatial and temporal variation over the past twenty years in tropical Queensland, Australia. There is a clear evidence for the existence of statistically significant clusters of dengue and these clusters varied over time. These findings enabled us to detect and target dengue clusters suggesting that the use of geospatial information can assist the health authority in planning dengue control activities and it would allow for better design and implementation of dengue management programs.

  5. Pan-Arctic river discharge: Prioritizing monitoring of future climate change hot spots

    NASA Astrophysics Data System (ADS)

    Bring, Arvid; Shiklomanov, Alexander; Lammers, Richard B.

    2017-01-01

    The Arctic freshwater cycle is changing rapidly, which will require adequate monitoring of river flows to detect, observe, and understand changes and provide adaptation information. There has, however, been little detail about where the greatest flow changes are projected, and where monitoring therefore may need to be strengthened. In this study, we used a set of recent climate model runs and an advanced macro-scale hydrological model to analyze how flows across the continental pan-Arctic are projected to change and where the climate models agree on significant changes. We also developed a method to identify where monitoring stations should be placed to observe these significant changes, and compared this set of suggested locations with the existing network of monitoring stations. Overall, our results reinforce earlier indications of large increases in flow over much of the Arctic, but we also identify some areas where projections agree on significant changes but disagree on the sign of change. For monitoring, central and eastern Siberia, Alaska, and central Canada are hot spots for the highest changes. To take advantage of existing networks, a number of stations across central Canada and western and central Siberia could form a prioritized set. Further development of model representation of high-latitude hydrology would improve confidence in the areas we identify here. Nevertheless, ongoing observation programs may consider these suggested locations in efforts to improve monitoring of the rapidly changing Arctic freshwater cycle.

  6. Fermi surface topology and hot spot distribution in the Kondo lattice system CeB6

    DOE PAGES

    Neupane, Madhab; Alidoust, Nasser; Belopolski, Ilya; ...

    2015-09-18

    Rare-earth hexaborides have attracted considerable attention recently in connection to a variety of correlated phenomena including heavy fermions, superconductivity, and low-temperature magnetic phases. Here, we present high-resolution angle-resolved photoemission spectroscopy studies of trivalent CeB6 and divalent BaB6 rare-earth hexaborides. Here we find that the Fermi surface electronic structure of CeB6 consists of large oval-shaped pockets around the X points of the Brillouin zone, whereas the states around the zone center Γ point are strongly renormalized. Our first-principles calculations agree with our experimental results around the X points but not around the Γ point, indicating areas of strong renormalization located nearmore » Γ. The Ce quasiparticle states participate in the formation of hot spots at the Fermi surface, whereas the incoherent f states hybridize and lead to the emergence of dispersive features absent in the non-$f$ counterpart BaB6. Lastly, our results provide an understanding of the electronic structure in rare-earth hexaborides, which will be useful in elucidating the nature of the exotic low-temperature phases in these materials.« less

  7. Sulfur oxidizers dominate carbon fixation at a biogeochemical hot spot in the dark ocean.

    PubMed

    Mattes, Timothy E; Nunn, Brook L; Marshall, Katharine T; Proskurowski, Giora; Kelley, Deborah S; Kawka, Orest E; Goodlett, David R; Hansell, Dennis A; Morris, Robert M

    2013-12-01

    Bacteria and archaea in the dark ocean (>200 m) comprise 0.3-1.3 billion tons of actively cycled marine carbon. Many of these microorganisms have the genetic potential to fix inorganic carbon (autotrophs) or assimilate single-carbon compounds (methylotrophs). We identified the functions of autotrophic and methylotrophic microorganisms in a vent plume at Axial Seamount, where hydrothermal activity provides a biogeochemical hot spot for carbon fixation in the dark ocean. Free-living members of the SUP05/Arctic96BD-19 clade of marine gamma-proteobacterial sulfur oxidizers (GSOs) are distributed throughout the northeastern Pacific Ocean and dominated hydrothermal plume waters at Axial Seamount. Marine GSOs expressed proteins for sulfur oxidation (adenosine phosphosulfate reductase, sox (sulfur oxidizing system), dissimilatory sulfite reductase and ATP sulfurylase), carbon fixation (ribulose-1,5-bisphosphate carboxylase oxygenase (RuBisCO)), aerobic respiration (cytochrome c oxidase) and nitrogen regulation (PII). Methylotrophs and iron oxidizers were also active in plume waters and expressed key proteins for methane oxidation and inorganic carbon fixation (particulate methane monooxygenase/methanol dehydrogenase and RuBisCO, respectively). Proteomic data suggest that free-living sulfur oxidizers and methylotrophs are among the dominant primary producers in vent plume waters in the northeastern Pacific Ocean.

  8. Sewage treatment plant serves as a hot-spot reservoir of integrons and gene cassettes.

    PubMed

    Ma, Liping; Zhang, Xu-Xiang; Zhao, Fuzheng; Wu, Bing; Cheng, Shupei; Yang, Liuyan

    2013-04-01

    This study investigated the occurrence and abundance of class 1 integrons and related antibiotic resistance genes (ARGs) in a sewage treatment plant (STP) of China. Totally, 189 bacterial strains were isolated from influent, activated sludge and effluent, and 40 isolates contained the integons with a complete structure. The intl1-carrying isolates were found to harbor two types of gene cassettes: dfr17-aadA5 and aadA2, conferring resistances to trimethoprim and streptomycin, which were further confirmed by antimicrobial susceptibility analysis. Many other gene cassettes were carried on integron, including qnrVC1, catB-8-blaoxa-10-aadA1-aac(6'), aadB-aacA29b, aadA2, aac(6')-1b, aadA6 and aadA12, which were detected using DNA cloning. Quantitative real time PCR showed that over 99% of the integrons was eliminated in activated sludge process, but average copy number of integrons in given bacterial cells was increased by 56% in treated sewage. Besides integrons, other mobile gene elements (MGEs) were present in the STP with high abundance. MGEs and the associated ARGs may be wide-spread in STPs, which constitute a potential hot spot for selection of antibiotic resistant bacteria and horizontal transfer of ARGs.

  9. CROI 2016: Hot Spots in HIV Infection and Advances in HIV Prevention.

    PubMed

    Buchbinder, Susan P; Liu, Albert Y

    2016-01-01

    The 2016 Conference on Retroviruses and Opportunistic Infections (CROI) highlighted hot spots in HIV infection. Men who have sex with men (MSM), transgender populations, people who inject drugs, fisherfolk, migrants, adolescents, and older adults are heavily impacted in a number of regions. Stigma contributes to risk behaviors and HIV acquisition across populations. HIV testing is a crucial first step in the HIV care continuum, and several large community-based surveys are underway in Africa to increase HIV testing, linkage to care, and uptake of antiretroviral treatment. Advances in preexposure prophylaxis (PrEP) featured prominently at CROI 2016. Two large efficacy trials of a vaginal ring containing the investigational drug dapivirine demonstrated efficacy and safety in preventing HIV infections in women in Africa. Data on the safety of long-acting injectable PrEP and several investigational PrEP drugs and formulations were also presented. Knowledge and use of PrEP among MSM in the United States appears to be increasing, and high uptake was seen among black MSM when provided as part of a culturally tailored support program. The use of broadly neutralizing antibodies for HIV prevention is a novel and promising approach to be evaluated in efficacy trials.

  10. Breakdown into nanoscale of graphene oxide: Confined hot spot atomic reduction and fragmentation

    PubMed Central

    Gonçalves, Gil; Vila, Mercedes; Bdikin, Igor; de Andrés, Alicia; Emami, Nazanin; Ferreira, Rute A. S.; Carlos, Luís D.; Grácio, José; Marques, Paula A. A. P.

    2014-01-01

    Nano-graphene oxide (nano-GO) is a new class of carbon based materials being proposed for biomedical applications due to its small size, intrinsic optical properties, large specific surface area, and easy to functionalize. To fully exploit nano-GO properties, a reproducible method for its production is of utmost importance. Herein we report, the study of the sequential fracture of GO sheets onto nano-GO with controllable lateral width, by a simple, and reproducible method based on a mechanism that we describe as a confined hot spot atomic fragmentation/reduction of GO promoted by ultrasonication. The chemical and structural changes on GO structure during the breakage were monitored by XPS, FTIR, Raman and HRTEM. We found that GO sheets starts breaking from the defects region and in a second phase through the disruption of carbon bonds while still maintaining crystalline carbon domains. The breaking of GO is accompanied by its own reduction, essentially by the elimination of carboxylic and carbonyl functional groups. Photoluminescence and photothermal studies using this nano-GO are also presented highlighting the potential of this nanomaterial as a unique imaging/therapy platform. PMID:25339424

  11. “Rings of saturn-like” nanoarrays with high number density of hot spots for surface-enhanced Raman scattering

    SciTech Connect

    Dai, Zhigao; Liao, Lei; Wu, Wei; Guo, Shishang; Zhao, Xinyue; Li, Wei; Ren, Feng; Jiang, Changzhong E-mail: czjiang@whu.edu.cn; Mei, Fei; Xiao, Xiangheng E-mail: czjiang@whu.edu.cn; Fu, Lei; Wang, Jiao

    2014-07-21

    The Ag nanoparticles (NPs) surrounding triangular nanoarrays (TNAs) with high number density of surface-enhanced Raman scattering (SERS) hot spots (SERS hot spots ring) are prepared by a combination of NPs deposition and subsequent colloid lithography processing. Owing to the SERS hot spots ring, the Ag NPs surrounding TNAs have been proved an excellent candidate for ultrasensitive molecular sensing for their high SERS signal enhancing capacity in experiments and theories. The Ag NPs surrounding TNAs can be readily used for the quick detection of low concentrations of molecules related to food safety; herein, detection of melamine is discussed.

  12. A Doubled Double Hot Spot in J0816+5003 and the Logarithmic Slope of the Lensing Potential

    NASA Astrophysics Data System (ADS)

    Blundell, Katherine M.; Schechter, Paul L.; Morgan, N. D.; Jarvis, Matt J.; Rawlings, Steve; Tonry, John L.

    2010-11-01

    We present an analysis of observations of the doubly lensed double hot spot in the giant radio galaxy J0816+5003 from MERLIN, MDM, WIYN, WHT, UKIRT, and the VLA. The images of the two hot spot components span a factor of 2 in radius on one side of the lensing galaxy at impact parameters of less than 500 pc. Hence, we measure the slope of the lensing potential over a large range in radius, made possible by significant improvement in the accuracy of registration of the radio and optical frame and higher resolution imaging data than previously available. We also infer the lens and source redshifts to be 0.332 and ~1, respectively. Purely on the basis of lens modeling, and independently of stellar velocity dispersion measurements, we find the potential to be very close to isothermal.

  13. Improving the hot-spot pressure and demonstrating ignition hydrodynamic equivalence in cryogenic deuterium tritium implosions on OMEGA

    SciTech Connect

    Goncharov, V. N.; Sangster, T. C.; Betti, R.; Boehly, T. R.; Bonino, M. J.; Collins, T. J.; Craxton, R. S.; Delettrez, J. A.; Edgell, D. H.; Epstein, R.; Follett, R. K.; Forrest, C. J.; Froula, D. H.; Yu. Glebov, V.; Harding, D. R.; Henchen, R. J.; Hu, S. X.; Igumenshchev, I. V.; Janezic, R.; Kelly, J. H.; Kessler, T. J.; Kosc, T. Z.; Loucks, S. J.; Marozas, J. A.; Marshall, F. J.; Maximov, A. V.; McCrory, R. L.; McKenty, P. W.; Meyerhofer, D. D.; Michel, D. T.; Myatt, J. F.; Nora, R.; Radha, P. B.; Regan, S. P.; Seka, W.; Shmayda, W. T.; Short, R.W.; Shvydky, A.; Skupsky, S.; Stoeckl, C.; Yaakobi, B.; Frenje, J. A.; Gatu-Johnson, M.; Petrasso, R. D.; Casey, D. T.

    2014-05-01

    Reaching ignition in direct-drive (DD) inertial confinement fusion implosions requires achieving central pressures in excess of 100 Gbar. The OMEGA laser system [T. R. Boehly et al., Opt. Commun. 133, 495 (1997)] is used to study the physics of implosions that are hydrodynamically equivalent to the ignition designs on the National Ignition Facility (NIF) [J. A. Paisner et al., Laser Focus World 30, 75 (1994)]. It is shown that the highest hot-spot pressures (up to 40 Gbar) are achieved in target designs with a fuel adiabat of α ≅ 4, an implosion velocity of 3.8 × 10⁷ cm/s, and a laser intensity of ~10¹⁵ W/cm². These moderate-adiabat implosions are well understood using two-dimensional hydrocode simulations. The performance of lower-adiabat implosions is significantly degraded relative to code predictions, a common feature between DD implosions on OMEGA and indirect-drive cryogenic implosions on the NIF. Simplified theoretical models are developed to gain physical understanding of the implosion dynamics that dictate the target performance. These models indicate that degradations in the shell density and integrity (caused by hydrodynamic instabilities during the target acceleration) coupled with hydrodynamics at stagnation are the main failure mechanisms in low-adiabat designs. To demonstrate ignition hydrodynamic equivalence in cryogenic implosions on OMEGA, the target-design robustness to hydrodynamic instability growth must be improved by reducing laser-coupling losses caused by cross beam energy transfer.

  14. Evidence for the murine IgH mu locus acting as a hot spot for intrachromosomal homologous recombination.

    PubMed

    Raynard, Steven J; Read, Leah R; Baker, Mark D

    2002-03-01

    Homologous recombination accomplishes the exchange of genetic information between two similar or identical DNA duplexes. It can occur either by gene conversion, a process of unidirectional genetic exchange, or by reciprocal crossing over. Homologous recombination is well known for its role in generating genetic diversity in meiosis and, in mitosis, as a DNA repair mechanism. In the immune system, the evidence suggests a role for homologous recombination in Ig gene evolution and in the diversification of Ab function. Previously, we reported the occurrence of homologous recombination between repeated, donor and recipient alleles of the Ig H chain mu gene C (Cmu) region residing at the Ig mu locus in mouse hybridoma cells. In this study, we constructed mouse hybridoma cell lines bearing Cmu region heteroalleles to learn more about the intrachromosomal homologous recombination process. A high frequency of homologous recombination (gene conversion) was observed for markers spanning the entire recipient Cmu region, suggesting that recombination might initiate at random sites within the Cmu region. The Cmu region heteroalleles were equally proficient as either conversion donors or recipients. Remarkably, when the same Cmu heteroalleles were tested for recombination in ectopic genomic positions, the mean frequency of gene conversion was reduced by at least 65-fold. These results are consistent with the murine IgH mu locus behaving as a hot spot for intrachromosomal homologous recombination.

  15. Imaging challenges in 20nm and 14nm logic nodes: hot spots performance in Metal1 layer

    NASA Astrophysics Data System (ADS)

    Timoshkov, V.; Rio, D.; Liu, H.; Gillijns, W.; Wang, J.; Wong, P.; Van Den Heuvel, D.; Wiaux, V.; Nikolsky, P.; Finders, J.

    2013-10-01

    The 20nm Metal1 layer, based on ARM standard cells, has a 2D design with minimum pitch of 64nm. This 2D design requires a Litho-Etch-Litho-Etch (LELE) double patterning. The whole design is divided in 2 splits: Me1A and Me1B. But solution of splitting conflicts needs stitching at some locations, what requires good Critical Dimension (CD) and overlay control to provide reliable contact between 2 stitched line ends. ASML Immersion NXT tools are aimed at 20 and 14nm logic production nodes. Focus control requirements become tighter, as existing 20nm production logic layouts, based on ARM, have about 50-60nm focus latitude and tight CD Uniformity (CDU) specifications, especially for line ends. IMEC inspected 20nm production Metal1 ARM standard cells with a Negative Tone Development (NTD) process using the Process Window Qualification-like technique experimentally and by Brion Tachyon LMC by simulations. Stronger defects were found thru process variations. A calibrated Tachyon model proved a good overall predictability capability for this process. Selected defects are likely to be transferred to hard mask during etch. Further, CDU inspection was performed for these critical features. Hot spots showed worse CD uniformity than specifications. Intra-field CDU contribution is significant in overall CDU budget, where reticle has major impact due to high MEEF of hot spots. Tip-to-Tip and tip-to-line hot spots have high MEEF and its variation over the field. Best focus variation range was determined by best focus offsets between hot spots and its variation within the field.

  16. A comparison of Ki-67 counting methods in luminal Breast Cancer: The Average Method vs. the Hot Spot Method

    PubMed Central

    Jang, Min Hye; Kim, Hyun Jung; Chung, Yul Ri; Lee, Yangkyu

    2017-01-01

    In spite of the usefulness of the Ki-67 labeling index (LI) as a prognostic and predictive marker in breast cancer, its clinical application remains limited due to variability in its measurement and the absence of a standard method of interpretation. This study was designed to compare the two methods of assessing Ki-67 LI: the average method vs. the hot spot method and thus to determine which method is more appropriate in predicting prognosis of luminal/HER2-negative breast cancers. Ki-67 LIs were calculated by direct counting of three representative areas of 493 luminal/HER2-negative breast cancers using the two methods. We calculated the differences in the Ki-67 LIs (ΔKi-67) between the two methods and the ratio of the Ki-67 LIs (H/A ratio) of the two methods. In addition, we compared the performance of the Ki-67 LIs obtained by the two methods as prognostic markers. ΔKi-67 ranged from 0.01% to 33.3% and the H/A ratio ranged from 1.0 to 2.6. Based on the receiver operating characteristic curve method, the predictive powers of the KI-67 LI measured by the two methods were similar (Area under curve: hot spot method, 0.711; average method, 0.700). In multivariate analysis, high Ki-67 LI based on either method was an independent poor prognostic factor, along with high T stage and node metastasis. However, in repeated counts, the hot spot method did not consistently classify tumors into high vs. low Ki-67 LI groups. In conclusion, both the average and hot spot method of evaluating Ki-67 LI have good predictive performances for tumor recurrence in luminal/HER2-negative breast cancers. However, we recommend using the average method for the present because of its greater reproducibility. PMID:28187177

  17. A comparison of Ki-67 counting methods in luminal Breast Cancer: The Average Method vs. the Hot Spot Method.

    PubMed

    Jang, Min Hye; Kim, Hyun Jung; Chung, Yul Ri; Lee, Yangkyu; Park, So Yeon

    2017-01-01

    In spite of the usefulness of the Ki-67 labeling index (LI) as a prognostic and predictive marker in breast cancer, its clinical application remains limited due to variability in its measurement and the absence of a standard method of interpretation. This study was designed to compare the two methods of assessing Ki-67 LI: the average method vs. the hot spot method and thus to determine which method is more appropriate in predicting prognosis of luminal/HER2-negative breast cancers. Ki-67 LIs were calculated by direct counting of three representative areas of 493 luminal/HER2-negative breast cancers using the two methods. We calculated the differences in the Ki-67 LIs (ΔKi-67) between the two methods and the ratio of the Ki-67 LIs (H/A ratio) of the two methods. In addition, we compared the performance of the Ki-67 LIs obtained by the two methods as prognostic markers. ΔKi-67 ranged from 0.01% to 33.3% and the H/A ratio ranged from 1.0 to 2.6. Based on the receiver operating characteristic curve method, the predictive powers of the KI-67 LI measured by the two methods were similar (Area under curve: hot spot method, 0.711; average method, 0.700). In multivariate analysis, high Ki-67 LI based on either method was an independent poor prognostic factor, along with high T stage and node metastasis. However, in repeated counts, the hot spot method did not consistently classify tumors into high vs. low Ki-67 LI groups. In conclusion, both the average and hot spot method of evaluating Ki-67 LI have good predictive performances for tumor recurrence in luminal/HER2-negative breast cancers. However, we recommend using the average method for the present because of its greater reproducibility.

  18. Detection of surface carbon and hydrocarbons in hot spot regions of niobium superconducting rf cavities by Raman spectroscopy

    NASA Astrophysics Data System (ADS)

    Cao, C.; Ford, D.; Bishnoi, S.; Proslier, T.; Albee, B.; Hommerding, E.; Korczakowski, A.; Cooley, L.; Ciovati, G.; Zasadzinski, J. F.

    2013-06-01

    Raman microscopy/spectroscopy measurements are presented on high purity niobium (Nb) samples, including pieces from hot spot regions of a tested superconducting rf cavity that exhibit a high density of etch pits. Measured spectra are compared with density functional theory calculations of Raman-active, vibrational modes of possible surface Nb-O and Nb-H complexes. The Raman spectra inside particularly rough pits in all Nb samples show clear differences from surrounding areas, exhibiting enhanced intensity and sharp peaks. While some of the sharp peaks are consistent with calculated NbH and NbH2 modes, there is better overall agreement with C-H modes in chain-type hydrocarbons. Other spectra reveal two broader peaks attributed to amorphous carbon. Niobium foils annealed to >2000°C in high vacuum develop identical Raman peaks when subjected to cold working. Regions with enhanced C and O have also been found by SEM/EDX spectroscopy in the hot spot samples and cold-worked foils, corroborating the Raman results. Such regions with high concentrations of impurities are expected to suppress the local superconductivity and this may explain the correlation between hot spots in superconducting rf (SRF) cavities and the observation of a high density of surface pits. The origin of localized high carbon and hydrocarbon regions is unclear at present but it is suggested that particular processing steps in SRF cavity fabrication may be responsible.

  19. Nitrogen Isotopes in Olivine Separates from Volcanic Arcs, Hot Spots and Continental Mantle Xenoliths

    NASA Astrophysics Data System (ADS)

    Fischer, T. P.; Takahata, N.; Sano, Y.; Hilton, D. R.

    2004-12-01

    We report the first nitrogen isotopic data of olivine separates from volcanic arcs (Cerro Negro, Nicaragua; Izalco, El Salvador; Turrialba, Costa Rica; Ichinomegata, Japan). In addition, we report nitrogen isotopic data of olivine separates from ocean islands (Hawaii, Reunion, Iceland) and continental mantle xenoliths (San Carlos, Arizona). Samples were processed by crushing and analyzed using a modified noble gas mass spectrometer (VG3400). N concentrations range from 0.6 to 22 micro ccSTP/g olivine. The 15N/14N ratios (expressed in the δ 15N notation where δ 15N sample = {[(15N/14N)sample/(15N/14N)Air]-1} X 1000) of olivine separates are distinctly different from air (0.0‰ ) and range from lower than mean MORB (- 5 ‰ ) to values characteristic of (subducted) oceanic sediments (+ 7 ‰ ). Positive δ 15N values are found in olivines from volcanic arcs: Cerro Negro 1992 ash (+ 6.2 ± 1.6‰ ), Izalco lava flow (+ 5.1 ± 0.7‰ ), Ichinomengata spinel lherzolite (+ 1.1 ± 0.5 ‰ ) with the exception of Turrialba lava (- 1.7 ± 2.5‰ ). Olivines from hot spots have both positive and negative δ 15N signatures: Iceland, Theistareykir - northern rift zone (- 8± 1.6 ‰ ), Hawaii, dunite from 1801 Kaupulehu flow of Hualuai volcano (+ 3.1 ± 0.3 ‰ ) and Reunion dunite (+ 0.2 ± 0.5‰ ). The San Carlos mantle xenolith has a value of - 1.5 ± 2.5‰ . 40Ar/36Ar ratios of the samples as determined in this study or reported in the literature are significantly higher than air (295.5) in olivines from Ichinomegata, San Carlos, Iceland, Reunion and Hawaii. The olivines from Cerro Negro have a 40Ar/36Ar ratio of 306, close to that of air. The 3He/4He ratios of the samples are higher than the MORB value of 8.0 RA (RA is the 3He/4He of air), the exception being Cerro Negro (6.1 RA). Hawaii, Reunion and Iceland have 3He/4He of 10.3, 12.9 and 12.3 RA, respectively. δ 15N signatures of fumarole gas samples collected at Cerro Negro (+ 4.9 ±0.1 ‰ ), Turrialba (- 1.0 ±0

  20. Are flood-driven turbidity currents hot spots for priming effect in lakes?

    NASA Astrophysics Data System (ADS)

    Bouffard, Damien; Perga, Marie-Elodie

    2016-06-01

    In deep stratified lakes, such as Lake Geneva, flood-driven turbidity currents are thought to contribute to the replenishment of deep oxygen by significant transport of river waters saturated with oxygen into the hypolimnion. The overarching aim of this study was to test this long-standing hypothesis directly. It combines direct observational data collected during an extreme flooding event that occurred in May 2015 with dark bioassays designed to evaluate the consequences of river-borne inputs for the hypolimnetic respiration. The exceptional precipitation events of May 2015 caused floods with an annual return time for the Rhône River, the dominant tributary of Lake Geneva, and with 50-year return time for the Dranse River, the second-most important tributary. Sediment-loaded river flows generated turbidity currents plunging into the lake hypolimnion. The observed river intrusions contributed to the redistribution of dissolved oxygen, with no net gain, when occurring in the lowermost hypolimnetic layer. In the uppermost hypolimnion above the last deep-mixing event, the intrusions coincided with a net oxygen deficit. Consistent with field observations, dark bioassays showed that 1 to 50 % substitution of riverine organic matter to deep (< 200 m) hypolimnetic water did not affect microbial respiration, while the addition of 1 to 10 % of riverine water to the uppermost hypolimnetic waters resulted in a respiration over-yielding, i.e. excess respiration of both river-borne and lacustrine organic matter. The results of our study conflict with the hypothesis that flood-driven turbidity currents necessarily increase hypolimnetic oxygen stocks in Lake Geneva. In contrast, results show that flood-driven turbidity currents can be potential hot spots for priming effect in lakes.

  1. Cooling water of power plant creates "hot spots" for tropical fishes and parasites.

    PubMed

    Emde, Sebastian; Kochmann, Judith; Kuhn, Thomas; Dörge, Dorian D; Plath, Martin; Miesen, Friedrich W; Klimpel, Sven

    2016-01-01

    Thermally altered water bodies can function as "hot spots" where non-native species are establishing self-sustaining populations beyond their tropical and subtropical native regions. Whereas many tropical fish species have been found in these habitats, the introduction of non-native parasites often remains undetected. Here, n = 77 convict cichlids (Amatitlania nigrofasciata) were sampled by electro-fishing at two sites from a thermally altered stream in Germany and examined for parasite fauna and feeding ecology. Stomach content analysis suggests an opportunistic feeding strategy of A. nigrofasciata: while plant material dominated the diet at the warm water inlet (∼30 °C), relative contributions of insects, plants, and crustaceans were balanced 3 km downstream (∼27 °C). The most abundant non-native parasite species was the tropical nematode Camallanus cotti with P = 11.90 % and P = 80.00 % at the inlet and further downstream, respectively. Additionally, nematode larvae of Anguillicoloides crassus and one specimen of the subtropical species Bothriocephalus acheilognathi were isolated. A. nigrofasciata was also highly infected with the native parasite Acanthocephalus anguillae, which could be linked to high numbers of the parasite's intermediate host Asellus aquaticus. The aim of this study was to highlight the risk and consequences of the release and establishment of ornamental fish species for the introduction and spread of non-indigenous metazoan parasites using the convict cichlid as a model species. Furthermore, the spread of non-native parasites into adjacent fish communities needs to be addressed in the future as first evidence of Camallanus cotti in native fish species was also found.

  2. Sensitivity "Hot Spots" in the Direct Analysis in Real Time Mass Spectrometry of Nerve Agent Simulants

    NASA Astrophysics Data System (ADS)

    Harris, Glenn A.; Falcone, Caitlin E.; Fernández, Facundo M.

    2012-01-01

    Presented here are findings describing the spatial-dependence of sensitivity and ion suppression effects observed with direct analysis in real time (DART). Continuous liquid infusion of dimethyl methyl phosphonate (DMMP) revealed that ion yield "hot spots" did not always correspond with the highest temperature regions within the ionization space. For instance, at lower concentrations (50 and 100 μM), the highest sensitivities were in the middle of the ionization region at 200 °C where there was a shorter ion transport distance, and the heat available to thermally desorb neutrals was moderate. Conversely, at higher DMMP concentrations (500 μM), the highest ion yield was directly in front of the DART source at 200 °C where it was exposed to the highest temperature for thermal desorption. In matching experiments, differential analyte volatility was observed to play a smaller role in relative ion suppression than differences in proton affinity and the relative sampling positions of analytes. At equimolar concentrations sampled at the same position, suppression was as high as 26× between isoquinoline (proton affinity 952 kJ mol-1, boiling point 242 °C) and p-anisidine (proton affinity 900 kJ mol-1, boiling point 243 °C). This effect was exacerbated when sampling positions of the two analytes differed, reaching levels of relative suppression as high as 4543.0× ± 1406.0. To mitigate this level of relative ion suppression, sampling positions and molar ratios of the analytes were modified to create conditions in which ion suppression was negligible.

  3. Hot Spots of Mercury Bioaccumulation in Amphibian Populations From the Conterminous United States

    NASA Astrophysics Data System (ADS)

    Bank, M. S.

    2008-12-01

    Mercury (Hg) contamination in the United States (U.S.) is well-documented and continues to be a public- health issue of great concern. Fish consumption advisories have been issued throughout much of the U.S. due to elevated levels of methylmercury (MeHg). Methylmercury contamination in the developing fetus and in young children is a major public health issue for certain sectors of the global human population. Moreover, identifying MeHg hot spots and the effects of MeHg pollution on environmental health and biodiversity are also considered a high priority for land managers, risk assessors, and conservation scientists. Despite their overall biomass and importance to aquatic and terrestrial ecosystems, Hg and MeHg bioaccumulation dynamics and toxicity in amphibians are not well studied, especially when compared to other vertebrate taxa such as birds, mammals, and fish species. Population declines in amphibians are well documented and likely caused by synergistic and interacting, multiple stressors such as climate change, exposure to toxic pollutants, fungal pathogens, and habitat loss and ecosystem degradation. Protecting quality of terrestrial ecosystems in the U.S. has enormous ramifications for economic and public health of the nation's residents and is fundamental to maintaining the biotic integrity of surface waters, riparian zones, and environmental health of forested landscapes nationwide. Determining Hg concentration levels for terrestrial and surface water ecosystems also has important implications for protecting the nation's fauna. Here I present an overview of the National Amphibian Mercury Program and evaluate variation in MeHg hotspots, Hg bioaccumulation and distribution in freshwater and terrestrial habitats across a broad gradient of physical, climatic, biotic, and ecosystem settings to identify the environmental conditions and ecosystem types that are most sensitive to Hg pollution. The role of geography, disturbance mechanisms, and abiotic and biotic

  4. Hot spot detection and spatio-temporal dispersion of dengue fever in Hanoi, Vietnam

    PubMed Central

    Toan, Do Thi Thanh; Hu, Wenbiao; Thai, Pham Quang; Hoat, Luu Ngoc; Wright, Pamela; Martens, Pim

    2013-01-01

    Introduction Dengue fever (DF) in Vietnam remains a serious emerging arboviral disease, which generates significant concerns among international health authorities. Incidence rates of DF have increased significantly during the last few years in many provinces and cities, especially Hanoi. The purpose of this study was to detect DF hot spots and identify the disease dynamics dispersion of DF over the period between 2004 and 2009 in Hanoi, Vietnam. Methods Daily data on DF cases and population data for each postcode area of Hanoi between January 1998 and December 2009 were obtained from the Hanoi Center for Preventive Health and the General Statistic Office of Vietnam. Moran's I statistic was used to assess the spatial autocorrelation of reported DF. Spatial scan statistics and logistic regression were used to identify space–time clusters and dispersion of DF. Results The study revealed a clear trend of geographic expansion of DF transmission in Hanoi through the study periods (OR 1.17, 95% CI 1.02–1.34). The spatial scan statistics showed that 6/14 (42.9%) districts in Hanoi had significant cluster patterns, which lasted 29 days and were limited to a radius of 1,000 m. The study also demonstrated that most DF cases occurred between June and November, during which the rainfall and temperatures are highest. Conclusions There is evidence for the existence of statistically significant clusters of DF in Hanoi, and that the geographical distribution of DF has expanded over recent years. This finding provides a foundation for further investigation into the social and environmental factors responsible for changing disease patterns, and provides data to inform program planning for DF control. PMID:23364076

  5. Identification of hot spots in the variola virus complement inhibitor (SPICE) for human complement regulation.

    PubMed

    Yadav, Viveka Nand; Pyaram, Kalyani; Mullick, Jayati; Sahu, Arvind

    2008-04-01

    Variola virus, the causative agent of smallpox, encodes a soluble complement regulator named SPICE. Previously, SPICE has been shown to be much more potent in inactivating human complement than the vaccinia virus complement control protein (VCP), although they differ only in 11 amino acid residues. In the present study, we have expressed SPICE, VCP, and mutants of VCP by substituting each or more of the 11 non-variant VCP residues with the corresponding residue of SPICE to identify hot spots that impart functional advantage to SPICE over VCP. Our data indicate that (i) SPICE is approximately 90-fold more potent than VCP in inactivating human C3b, and the residues Y98, Y103, K108 and K120 are predominantly responsible for its enhanced activity; (ii) SPICE is 5.4-fold more potent in inactivating human C4b, and residues Y98, Y103, K108, K120 and L193 mainly dictate this increase; (iii) the classical pathway decay-accelerating activity of activity is only twofold higher than that of VCP, and the 11 mutations in SPICE do not significantly affect this activity; (iv) SPICE possesses significantly greater binding ability to human C3b compared to VCP, although its binding to human C4b is lower than that of VCP; (v) residue N144 is largely responsible for the increased binding of SPICE to human C3b; and (vi) the human specificity of SPICE is dictated primarily by residues Y98, Y103, K108, and K120 since these are enough to formulate VCP as potent as SPICE. Together, these results suggest that principally 4 of the 11 residues that differ between SPICE and VCP partake in its enhanced function against human complement.

  6. Whispering gallery modes microcavities with J-aggregates and plasmonic hot spots

    NASA Astrophysics Data System (ADS)

    Rakovich, Yury P.; Melnikau, Dzmitry; Savateeva, Diana; Chuvilin, Andrey; Hillenbrand, Rainer

    2012-06-01

    We have studied the optical properties of a hybrid system consisting of cyanine dye J-aggregates (both PIC and TDBC) attached to a spherical microcavity. Instead of the commonly accepted chemical bonding of dye molecules to the surface of microspheres or deposition of dye-doped sol-gel film, in our experiments microspheres were coated with J-aggregate shell utilizing the layer-by-layer assembly of the ultrathin films. In this approach we aimed to take advantage of light confinement in the Whispering Gallery Modes (WGMs) microcavity by placing the emitter (shell of J-aggregates) just at the rim of the microsphere, where the resonant electromagnetic field reaches its maximum. A periodic structure of narrow peaks was observed in the photoluminescence spectrum of the J-aggregates, arising from the coupling between the emission of J-aggregates and the WGMs of the microcavity. The most striking result of our study is the observation of polarization sensitive mode damping caused by re-absorption of J-aggregate emission. This effect manifests itself in dominating emission from the transverse magnetic modes in the spectral region of J-aggregates absorption band where the transverse electric (TE) modes are strongly suppressed. Strong suppression of TE modes reflects preferential tangential orientation of transition dipole moment of J-aggregates in deposited microcavity shell. Observed polarization sensitive mode damping observed in the spectral region of high J-aggregate absorption can be used for suppression of unwanted modes in high Q optical resonators. We also demonstrate that the emission intensity can be further enhanced by depositing a hybrid layer of J-aggregates and Ag nanoparticles onto the spherical microcavity. Owing to the concerted action of WGMs and plasmonic hot spots in the Ag aggregates, we observe strongly enhanced Raman signal from the Jaggregates. Microcavities covered by J-aggregates and plasmonic nanoparticles could be thus useful for a variety of

  7. Electric arc furnaces for steel-making: hot spots for persistent organic pollutants.

    PubMed

    Odabasi, Mustafa; Bayram, Abdurrahman; Elbir, Tolga; Seyfioglu, Remzi; Dumanoglu, Yetkin; Bozlaker, Ayse; Demircioglu, Hulusi; Altiok, Hasan; Yatkin, Sinan; Cetin, Banu

    2009-07-15

    Persistent organic pollutant (POP) concentrations were measured in stack-gases of ferrous scrap processing steel plants with electric arc furnaces (EAFs) (n = 5) in Aliaga, Izmir, Turkey and in air (n = 11) at a site near those plants. Measured stack-gas concentrations for the four plants without scrap preheating (611 +/- 311, 165,000 +/- 285,000, and 33 +/- 3 ng m(-3), average +/- SD for sigma41PCBs, sigma16PAHs, and sigma7PBDEs, respectively) indicated that they are significant sources for polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), and polybrominated diphenyl ethers (PBDEs). POP emissions from the plant with scrap preheating were significantly higher (13 500, 445 000, and 91 ng m(-3) for sigma41PCBs, sigma16PAHs, and sigma7PBDEs, respectively). It was also shown that the steel plants emit considerable amounts of fugitive POPs in particle-phase. Estimated emissions using the emission factors generated in this study and the production amounts suggested that the steel plants with EAFs may significantly contribute to local and global PAH, PCB, and PBDE emissions. Several other compounds (aromatic and aliphatic hydrocarbons, oxygen, sulfur, nitrogen, and chlorine-containing organic compounds, n = 49) were identified and determined semiquantitatively in the stack-gas and ambient air samples. Ambient air concentrations (62 +/- 35, 320 +/- 134 ng m(-3), 1451 +/- 954 pg m(-3), for sigma41PCBs, sigma16PAHs, and sigma7PBDEs, respectively) were significantly higher than those measured previously around the world and in the region, further confirming that the steel plants with EAFs are "hot spots" for POPs.

  8. Relating Precipitation Phenomena with MODIS Detected Hot Spots in the Maritime Continent

    NASA Astrophysics Data System (ADS)

    Ramirez, E. M.; Reid, J. S.; Xian, P.; Hyer, E.; Turk, J.; Flatau, M.; Zhang, C.

    2009-12-01

    Recent studies of land use practices in SE Asia’s Maritime Continent (MC) have raised questions over potential meteorological implications including smoke-cloud interaction and changes in the regional radiation budget. Land management practices on Java, Sumatra, Sulawesi, Borneo, and the Malay Peninsula include biomass burning to clear primary forest as well as to maintain oil palm plantations. Burning is also employed for clearing unwanted remains from previous crops, rice stubble for example. However, burning activity is often dictated by weather, in particular precipitation. We studied 5 years of MODIS active fire hot spot and satellite precipitation data to investigate how observed burning activity correlated with precipitation features at four major scales: 1) Intraseasonal El Nino-Southern Oscillation (ENSO) and Indian Ocean Dipole (IOP); 2) Seasonal migration of the Intertropical Convergence Zone (ITCZ); 3) the 30-90 day Madden Julian Oscillation (MJO); and 4) regional convection from localized weather phenomenon (e.g., orographic, isolated thermal convection, sea breeze, etc…). It was found that observed burn patterns from each of the islands of the MC had differing responses to these four forcings. Observed burning activity on the islands of Borneo and Sulawesi correlated strongly with the ENSO and ITCZ indicies, whereas Sumatra was more influenced by the phase and strength of the MJO. Java, showing a mix of influence, exhibited strong fire activity in the morning rather than afternoon which is unusual for most burning regions. We hypothesize that these observed relationships reflect both physical land use differences and contextual bias/observability issues associated with the region’s heavy cloud cover. For further studies on smoke-meteorology interaction, our findings point to the need for a clear understanding of the meteorological context of satellite observations.

  9. Thermal screening of facial skin arterial hot spots using non-contact infrared radiometry.

    PubMed

    Williams, E M; Heusch, A I; McCarthy, P W

    2008-03-01

    Non-contact infrared thermometry of facial skin offers advantages over less accessible internal body sites, especially when considering mass screening for febrile infectious disease. The forehead offers an obvious site, but does not present an isothermic surface, as various small arteries passing close to the surface create 'hot-spots'. The aim of this study is to use non-contact infrared (IR) thermometry to determine the link between the temperature at specific facial skin sites and clinical body temperature. A sample of 169 asymptomatic adults (age range 18-54 years) was screened with IR thermometers (Braun Thermoscan proLT for auditory meatus (AM) temperature representing clinical body temperature, and a Raytek, Raynger MX for skin surface temperature). Peak IR skin temperature was measured over the course of each posterior auricular artery (PAA) and each superficial temporal artery (STA). In a sub-group (n = 54) the peak skin temperature of the forehead's metopic region (MR) was also recorded. There were no differences (P > 0.05) between the PAA and STA at 34.2 +/- 0.9 degrees C and 34.2 +/- 0.7 degrees C, respectively, which were 2.5 degrees C cooler than the AM temperature (36.7 +/- 0.5 degrees C, p < 0.001). Although there was no correlation between AM and PAA or STA there was a correlation (r2 = 0.63, p < 0.001) between PAA and STA. There were no asymmetric temperature differences between the left and right sides and males had warmer skin over the MR (F, 33.6 +/- 0.7 degrees C versus M, 34.4 +/- 0.6 degrees C, p < 0.001). Although a lack of correlation between either PAA or STA and AM was apparent in asymptomatics, further research in symptomatics is required to determine the usefulness of these measurements in mass screening of conditions such as fever.

  10. Identifying and Mitigating Potential Nutrient and Sediment Hot Spots under a Future Scenario in the Missouri River Basin

    SciTech Connect

    Wu, May; Zhang, Zhonglong

    2015-09-01

    Using the Soil and Water Assessment Tool (SWAT) for large-scale watershed modeling could be useful for evaluating the quality of the water in regions that are dominated by nonpoint sources in order to identify potential “hot spots” for which mitigating strategies could be further developed. An analysis of water quality under future scenarios in which changes in land use would be made to accommodate increased biofuel production was developed for the Missouri River Basin (MoRB) based on a SWAT model application. The analysis covered major agricultural crops and biofuel feedstock in the MoRB, including pasture land, hay, corn, soybeans, wheat, and switchgrass. The analysis examined, at multiple temporal and spatial scales, how nitrate, organic nitrogen, and total nitrogen; phosphorus, organic phosphorus, inorganic phosphorus, and total phosphorus; suspended sediments; and water flow (water yield) would respond to the shifts in land use that would occur under proposed future scenarios. The analysis was conducted at three geospatial scales: (1) large tributary basin scale (two: Upper MoRB and Lower MoRB); (2) regional watershed scale (seven: Upper Missouri River, Middle Missouri River, Middle Lower Missouri River, Lower Missouri River, Yellowstone River, Platte River, and Kansas River); and (3) eight-digit hydrologic unit (HUC-8) subbasin scale (307 subbasins). Results showed that subbasin-level variations were substantial. Nitrogen loadings decreased across the entire Upper MoRB, and they increased in several subbasins in the Lower MoRB. Most nitrate reductions occurred in lateral flow. Also at the subbasin level, phosphorus in organic, sediment, and soluble forms was reduced by 35%, 45%, and 65%, respectively. Suspended sediments increased in 68% of the subbasins. The water yield decreased in 62% of the subbasins. In the Kansas River watershed, the water quality improved significantly with regard to every nitrogen and phosphorus compound. The improvement was

  11. Effect of inductors to mitigate the hot-spot problem in parallel-connected superconducting thin-film fault current limiting elements

    NASA Astrophysics Data System (ADS)

    Yamasaki, H.; Furuse, M.; Kaiho, K.

    2015-06-01

    We have been developing superconducting thin-film fault current limiter (FCL) elements, in which high-resistivity Au-Ag alloy shunt layers are used to protect YBa2Cu3O7 (YBCO) thin films deposited on CeO2-buffered sapphire substrates. The high resistance of the thin films enables the element to withstand high electric fields of more than 40 Vpeak cm-1 during the current-limiting period after quenching, thus greatly reducing the amount of YBCO thin film needed and, consequently, the cost of an FCL. We have succeeded in fabricating and testing 500 V/200 A FCL modules using two 20 cm long YBCO films connected in parallel. In the present study, we performed extensive switching experiments on FCL elements, in which two YBCO films are connected in parallel to achieve higher rated currents, and confirmed the previously observed phenomenon that the hot-spot problem causing film damage just after quench initiation becomes more severe when the total critical current of the thin films is higher. We have investigated the origin of this phenomenon and found that a rapid current transfer from the first-quenched film with lower critical current to the other film causes higher current in the secondly-quenched film that sometimes leads to hot spots. It is demonstrated that the serious hot-spot problem can be mitigated by the use of inductors when the high-resistance FCL elements are connected in parallel. Based on these findings we propose an appropriate architecture of a high electric-field superconducting thin-film FCL that can be used in a real power grid.

  12. Comparison of the Manual, Semiautomatic, and Automatic Selection and Leveling of Hot Spots in Whole Slide Images for Ki-67 Quantification in Meningiomas

    PubMed Central

    Swiderska, Zaneta; Korzynska, Anna; Markiewicz, Tomasz; Lorent, Malgorzata; Zak, Jakub; Wesolowska, Anna; Roszkowiak, Lukasz; Slodkowska, Janina; Grala, Bartlomiej

    2015-01-01

    Background. This paper presents the study concerning hot-spot selection in the assessment of whole slide images of tissue sections collected from meningioma patients. The samples were immunohistochemically stained to determine the Ki-67/MIB-1 proliferation index used for prognosis and treatment planning. Objective. The observer performance was examined by comparing results of the proposed method of automatic hot-spot selection in whole slide images, results of traditional scoring under a microscope, and results of a pathologist's manual hot-spot selection. Methods. The results of scoring the Ki-67 index using optical scoring under a microscope, software for Ki-67 index quantification based on hot spots selected by two pathologists (resp., once and three times), and the same software but on hot spots selected by proposed automatic methods were compared using Kendall's tau-b statistics. Results. Results show intra- and interobserver agreement. The agreement between Ki-67 scoring with manual and automatic hot-spot selection is high, while agreement between Ki-67 index scoring results in whole slide images and traditional microscopic examination is lower. Conclusions. The agreement observed for the three scoring methods shows that automation of area selection is an effective tool in supporting physicians and in increasing the reliability of Ki-67 scoring in meningioma. PMID:26240787

  13. The topographic wetness index as a predictor for hot spots of DOC export from catchments

    NASA Astrophysics Data System (ADS)

    Musolff, Andreas; Oosterwoud, Marieke; Tittel, Jörg; Selle, Benny; Fleckenstein, Jan H.

    2015-04-01

    Dissolved organic carbon (DOC) concentrations in the discharge of many catchments in Europe and North America are rising. This increase is of concern for the drinking water supply from reservoirs since high DOC concentrations cause additional costs in water treatment and potentially the formation of harmful disinfection by-products. A prerequisite for understanding this increase is the knowledge on the spatial distribution of dominant soil DOC sources within catchments and on mobilization as well as transfer processes to the surface water. A number of studies identified wetland soils as the dominant source with fast mobilization and short transit times to the receiving surface water. However, most studies have either focussed on smaller, hillslope and single catchment or on larger scale multi-catchment assessments. Moreover, information on the distribution of soil types in catchments is not always readily available. This study brings together both types of assessment in a data-driven top-down approach: (i) a detailed survey on DOC concentration and loads over the course of one year within two paired data-rich catchments discharging into a large drinking water reservoir in central Germany and (ii) a database of hydrochemistry and physio-geographic characteristics of 113 catchments draining into 58 reservoirs across Germany over the course of 16 years. The objective is to define hot spots of DOC export within the catchments for both types of assessments (i, ii) and to test the suitability of the topographic wetness index (TWI) as a proxy for well-connected wetland soils at various spatial scales. In the sub-catchments of assessment (i) the spatial variability of concentrations and loads was much smaller than expected. None of the studied sub-catchments was a predominant producer of the total DOC loads exported from the catchments. We found the mean concentrations and loads to be positively correlated with the share of groundwater-dominated soils in the sub

  14. Hot Spots and Mantle Plumes: A Window Into the Deep Earth and a Lesson on How Science Really Works

    NASA Astrophysics Data System (ADS)

    Caplan-Auerbach, J.

    2010-12-01

    Despite years of discussion, debate and controversy over the causes of ocean island volcanism, most students simply learn that such features form from fixed plumes of hot material rising from the core mantle boundary. Although we know that the Hawaiian plume exhibited substantial southward motion, most introductory geology textbooks still report that hot spots are fixed and that the Hawaiian-Emperor bend reflects a change in plate motion. That mantle plumes are the focus of significant controversy within the scientific community is rarely, if ever, discussed, and alternative models for the formation of intraplate volcanoes are ignored. Students may thus complete their studies without learning about the dynamic debate focused on the existence and formation of mantle plumes. This issue represents an opportunity for students to see how science really works, how new models are constructed, and what distinguishes a hypothesis from a theory. The culminating project in Western Washington University’s Introduction to Geophysics class, a course required for the BS degree in geology, focuses on the hot spot and mantle plume debate. For the first nine weeks of the quarter students learn about general topics in geophysics including plate tectonics, magnetism, seismology, gravity and heat flow. At the end of the course, students break into small research groups with the goal of investigating how geophysics may be used to address three questions: (1) Do ocean island volcanoes form from mantle plumes? (2) Are “hot spots” actually hot? (3) Are hot spots stationary? Each group examines how these questions may be addressed using a specific geophysical tool. In addition to the five topics described above, a sixth group investigates the question of “if not hot spots/mantle plumes, how do ocean island volcanoes form?” Students read the current literature on the topic and present their results to their classmates. Presentations focus on topics such as the use of seismic

  15. Improving the hot-spot pressure and demonstrating ignition hydrodynamic equivalence in cryogenic deuterium–tritium implosions on OMEGA

    SciTech Connect

    Goncharov, V. N.; Sangster, T. C.; Betti, R.; Boehly, T. R.; Bonino, M. J.; Collins, T. J. B.; Craxton, R. S.; Delettrez, J. A.; Edgell, D. H.; Epstein, R.; Follett, R. K.; Forrest, C. J.; Froula, D. H.; Glebov, V. Yu.; Harding, D. R.; Henchen, R. J.; Hu, S. X.; Igumenshchev, I. V.; Janezic, R.; Kelly, J. H.; and others

    2014-05-15

    Reaching ignition in direct-drive (DD) inertial confinement fusion implosions requires achieving central pressures in excess of 100 Gbar. The OMEGA laser system [T. R. Boehly et al., Opt. Commun. 133, 495 (1997)] is used to study the physics of implosions that are hydrodynamically equivalent to the ignition designs on the National Ignition Facility (NIF) [J. A. Paisner et al., Laser Focus World 30, 75 (1994)]. It is shown that the highest hot-spot pressures (up to 40 Gbar) are achieved in target designs with a fuel adiabat of α ≃ 4, an implosion velocity of 3.8 × 10{sup 7} cm/s, and a laser intensity of ∼10{sup 15} W/cm{sup 2}. These moderate-adiabat implosions are well understood using two-dimensional hydrocode simulations. The performance of lower-adiabat implosions is significantly degraded relative to code predictions, a common feature between DD implosions on OMEGA and indirect-drive cryogenic implosions on the NIF. Simplified theoretical models are developed to gain physical understanding of the implosion dynamics that dictate the target performance. These models indicate that degradations in the shell density and integrity (caused by hydrodynamic instabilities during the target acceleration) coupled with hydrodynamics at stagnation are the main failure mechanisms in low-adiabat designs. To demonstrate ignition hydrodynamic equivalence in cryogenic implosions on OMEGA, the target-design robustness to hydrodynamic instability growth must be improved by reducing laser-coupling losses caused by cross beam energy transfer.

  16. Direct imaging of hot spots in Bi2Sr2CaCu2O8+δ mesa terahertz sources

    NASA Astrophysics Data System (ADS)

    Benseman, T. M.; Koshelev, A. E.; Kwok, W.-K.; Welp, U.; Vlasko-Vlasov, V. K.; Kadowaki, K.; Minami, H.; Watanabe, C.

    2013-04-01

    Stacks of intrinsic Josephson junctions (IJJs) made from high-temperature superconductors such as Bi2Sr2CaCu2O8+δ (Bi-2212) (BSCCO) are a promising source of coherent continuous-wave terahertz radiation. It is thought that at electrical bias conditions under which THz-emission occurs, hot spots may form due to resistive self-heating, and that these spots may be highly beneficial for the generation of high levels of THz power. Here, we perform an imaging study of the temperature distribution at the surface of BSCCO stacks utilizing the temperature-dependent 612 nm fluorescence line of Eu3+ in a europium chelate. The images directly reveal a highly non-uniform temperature distribution in which the temperature in the middle of the stack can exceed the superconducting transition temperature by tens of Kelvin under biasing conditions typical for THz-emission.

  17. Controlling plasmonic "hot spots" in nanoparticle assemblies using ligand place-exchange reactions

    NASA Astrophysics Data System (ADS)

    Bao, Lanlan

    This thesis describes the 1) selective attachment of Au nanoparticles (NPs) to the edges of Au nanoplates via ligand place-exchange reactions, 2) preparation of coupled Au nanoplates via ligand place-exchange reactions, 3) attachment of Au NPs to Au nanorods via ligand place-exchange reactions, 4) study of the dynamics of ligand place-exchange reactions on Au nanoplates, 5) study of the changes in the optical properties of Au nanoplates upon attachment of Au NPs by observing the shift in the localized surface plasmon resonance (LSPR) band, and 6) study of the surface-enhanced Raman spectroscopy (SERS) enhancement of analyte molecules located in the "hot-spots" of coupled Au nanoplate-Au NP structures. We regio-selectively attached 20 nm Au NPs to Au nanoplates by first assembling hexanethiol (HT) onto Au nanoplates, then exchanging HT with 4-aminothiophenol (4-ATP) using different reaction times, and finally electrostatically attaching the negatively-charged Au NPs to the positively-charged 4-ATP ligands bound to the Au nanoplates. We prepared nanoplate-NP assemblies with 100% of the NPs attached to vertex sites or 100% attached to vertex and edge sites using 1 h and 2 h exchange times, respectively. The location and number of bound Au NPs to the nanoplates as a function of exchange time provided information about the mechanism of the ligand place-exchange reaction on the Au nanoplate surface. Ligand place-exchange starts from the vertex sites, then proceeds at the edge sites and finally occurs at smooth terrace sites for longer times. Direct exchange at terraces is possible but the data suggests it occurs mostly through lateral migration of the 4-ATP ligands from vertex/edge sites to the terrace. The data also suggests that phase segregation of 4-ATP ligands and HT ligands occurs on the terrace sites for longer times. The ligand place-exchange strategy also leads to interesting coupled Au nanoplate-Au nanoplate and Au nanorod-Au NP assemblies. The optical

  18. The great lunar hot spot and the composition and origin of the Apollo mafic (``LKFM'') impact-melt breccias

    NASA Astrophysics Data System (ADS)

    Korotev, Randy L.

    2000-02-01

    Thorium-rich, mafic impact-melt breccias from the Apollo 14-17 missions, that is, those breccias identified with the composition known as ``LKFM,'' are regarded largely as products of basin-forming impacts that penetrated the feldspathic crust and sampled underlying mafic material and magma-ocean residuum carrying the compositional signature of KREEP (potassium, rare earth elements, phosphorous). Despite considerable compositional variation among such breccias, compositions of all of them correspond to mixtures of only four components: (1) a norite with composition generally similar to that of Apollo 15 basalt (mean abundance: 58% range: ~30-95%), (2) Fo~90 dunite (mean: 13%, range: 1-27%), (3) feldspathic upper crust (mean: 29%, range: 4-50%), and FeNi metal (0.1-1.7%). Petrographic evidence has shown that much of the feldspathic component, but none of the KREEP component, is clastic. This observation and the high proportion of KREEP norite component in the breccias suggest that the melt zone of the impact or impacts forming the breccias contained little feldspathic material but consisted predominantly of material with the average composition of KREEP norite. The dunite component probably derives ultimately from the upper mantle. These conclusions support the hypothesis that the breccias were not formed in typical feldspathic crust but instead by one or more impacts into what is designated here ``the great lunar hot spot,'' that is, the anomalous Th-rich terrane in the Imbrium-Procellarum area identified by the Apollo and Lunar Prospector gamma-ray spectrometers. The LKFM composition is a special product of the great lunar hot spot and is not the average composition of the lower crust in typical feldspathic highlands. Similarly, Mg-suite and alkali-suite plutonic rocks of the Apollo collection are likely all differentiation products of the hot spot, not of plutons that might occur in typical feldspathic crust.

  19. Identifying binding hot spots on protein surfaces by mixed-solvent molecular dynamics: HIV-1 protease as a test case.

    PubMed

    Ung, Peter M U; Ghanakota, Phani; Graham, Sarah E; Lexa, Katrina W; Carlson, Heather A

    2016-01-01

    Mixed-solvent molecular dynamics (MixMD) simulations use full protein flexibility and competition between water and small organic probes to achieve accurate hot-spot mapping on protein surfaces. In this study, we improved MixMD using human immunodeficiency virus type-1 protease (HIVp) as the test case. We used three probe-water solutions (acetonitrile-water, isopropanol-water, and pyrimidine-water), first at 50% w/w concentration and later at 5% v/v. Paradoxically, better mapping was achieved by using fewer probes; 5% simulations gave a superior signal-to-noise ratio and far fewer spurious hot spots than 50% MixMD. Furthermore, very intense and well-defined probe occupancies were observed in the catalytic site and potential allosteric sites that have been confirmed experimentally. The Eye site, an allosteric site underneath the flap of HIVp, has been confirmed by the presence of a 5-nitroindole fragment in a crystal structure. MixMD also mapped two additional hot spots: the Exo site (between the Gly16-Gly17 and Cys67-Gly68 loops) and the Face site (between Glu21-Ala22 and Val84-Ile85 loops). The Exo site was observed to overlap with crystallographic additives such as acetate and dimethyl sulfoxide that are present in different crystal forms of the protein. Analysis of crystal structures of HIVp in different symmetry groups has shown that some surface sites are common interfaces for crystal contacts, which means that they are surfaces that are relatively easy to desolvate and complement with organic molecules. MixMD should identify these sites; in fact, their occupancy values help establish a solid cut-off where "druggable" sites are required to have higher occupancies than the crystal-packing faces.

  20. Global Admittance Estimates of Elastic and Crustal Thickness of Venus: Results from Top, Hot Spot, and Bottom Loading Models

    NASA Technical Reports Server (NTRS)

    Smrekar, S. E.; Anderson, F. S.

    2005-01-01

    We have calculated admittance spectra using the spatio-spectral method [14] for Venus by moving the central location of the spectrum over a 1 grid, create 360x180 admittance spectra. We invert the observed admittance using top-loading (TL), hot spot (HS), and bottom loading (BL) models, resulting in elastic, crustal, and lithospheric thickness estimates (Te, Zc, and Zl) [0]. The result is a global map for interpreting subsurface structure. Estimated values of Te and Zc concur with previous TL local admittance results, but BL estimates indicate larger values than previously suspected.

  1. Hot spot formation and chemical reaction initiation in shocked HMX crystals with nanovoids: a large-scale reactive molecular dynamics study.

    PubMed

    Zhou, Tingting; Lou, Jianfeng; Zhang, Yangeng; Song, Huajie; Huang, Fenglei

    2016-07-14

    We report million-atom reactive molecular dynamic simulations of shock initiation of β-cyclotetramethylene tetranitramine (β-HMX) single crystals containing nanometer-scale spherical voids. Shock induced void collapse and subsequent hot spot formation as well as chemical reaction initiation are observed which depend on the void size and impact strength. For an impact velocity of 1 km s(-1) and a void radius of 4 nm, the void collapse process includes three stages; the dominant mechanism is the convergence of upstream molecules toward the centerline and the downstream surface of the void forming flowing molecules. Hot spot formation also undergoes three stages, and the principal mechanism is kinetic energy transforming to thermal energy due to the collision of flowing molecules on the downstream surface. The high temperature of the hot spot initiates a local chemical reaction, and the breakage of the N-NO2 bond plays the key role in the initial reaction mechanism. The impact strength and void size have noticeable effects on the shock dynamical process, resulting in a variation of the predominant mechanisms leading to void collapse and hot spot formation. Larger voids or stronger shocks result in more intense hot spots and, thus, more violent chemical reactions, promoting more reaction channels and generating more reaction products in a shorter duration. The reaction products are mainly concentrated in the developed hot spot, indicating that the chemical reactivity of the hmx crystal is greatly enhanced by void collapse. The detailed information derived from this study can aid a thorough understanding of the role of void collapse in hot spot formation and the chemical reaction initiation of explosives.

  2. Microstructure and Tensile-Shear Properties of Resistance Spot Welded 22MnMoB Hot-Stamping Annealed Steel

    NASA Astrophysics Data System (ADS)

    Li, Yang; Cui, Xuetuan; Luo, Zhen; Ao, Sansan

    2017-01-01

    The present paper deals with the joining of 22MnMoB hot-stamping annealed steel carried out by the spot welding process. Microstructural characterization, microhardness testing and tensile-shear testing were conducted. The effects of the welding parameters, including the electrode tip diameter, welding current, welding time and electrode force upon the tensile-shear properties of the welded joints, were investigated. The results showed that a weld size of 9.6 mm was required to ensure pullout failure for the 1.8 -mm-thick hot-stamping annealed steel sheet. The welding current had the largest influence upon the tensile-shear properties of the 22MnMoB steel welded joint. The bulk resistance should play an important role in the nugget formation. In pullout failure mode, failure was initiated at the heat-affected zone, where softening occurs owing to the tempering of martensite.

  3. The Rhizosphere Zone: A Hot Spot of Microbial Activity and Methylmercury Production in Saltmarsh Sediments of San Francisco Bay, California

    NASA Astrophysics Data System (ADS)

    Windham-Myers, L.; Marvin-Dipasquale, M.; Voytek, M.; Kirshtein, J.; Krabbenhoft, D. P.; Agee, J. L.; Cox, M.; Kakouros, E.; Collins, J. N.; Yee, D.

    2008-12-01

    bacterial DNA in vegetated sites. In contrast to microbial indicators of mercury methylation, no effects of devegetation or seasonal sampling were observed on sediment pools of reactive Hg (Hg(II)R), although the relative abundance of mercuric reductase functional genes (MerA) was reduced by devegetation and was correlated with live root density. These experiments, among others, demonstrate that the presence and activity of emergent wetland plants directly influence Hg cycling in densely rooted surface soils. Development of this shallow and dense rhizosphere is likely to be a primary reason as to why periodically flooded, high elevation marsh sites are a "hot spot" for mercury methylation.

  4. The Jets of Enceladus: Locations, Correlations with Thermal Hot Spots, and Jet Particle Vertical Velocities

    NASA Astrophysics Data System (ADS)

    Porco, C.; Ingersoll, A. P.; Dinino, D.; Helfenstein, P.; Roatsch, T.; Mitchell, C. J.; Ewald, S. P.

    2010-12-01

    High resolution images of Enceladus and its south polar jets taken with the Cassini ISS cameras in the last year have provided an opportunity for detailed study of the jetting phenomenon and its relationship to features and thermal hot spots on the moon’s south polar terrain. We have identified ~ 30 individual jets in a series of images, ranging from 43 to 100 m per pixel, taken in November 2009. All jets are found to be erupting through `tiger stripe’ fractures that cross the south polar terrain. The most intense jetting activity generally corresponds to the hottest regions on the fractures. One of the brightest, most prominent jets observed in this image series vents from a region on the Damascus Sulcus fracture that was imaged at 16 m/pixel during Cassini’s August 13, 2010 flyby; it is also one of the hottest places found so far on the south polar region. Several jets were selected for dynamical modeling. These were jets whose source regions were on the limb as seen from Cassini, allowing extraction of brightness profiles down to a few hundred meters of the surface. We infer the velocity distribution of the particles as they leave the surface by modeling the integrated brightness vs. altitude. The particles are assumed to follow ballistic trajectories, and their contribution to the brightness in each thin layer is proportional to the time that they spend in the layer. We find slow jets, fast jets, and jets in between. After a rapid ~ 2-km-scale-height decrease near the surface, the most prominent jet (mentioned above) extends with constant integrated brightness to the edge of the image 25 km above the surface; some of the particles in this jet appear to have mean velocities that exceed the 235 m/sec escape speed from Enceladus. Further analysis of higher-altitude images from the November flyby is in progress to verify this result. The integrated brightness of slow jets falls off with a scale height of 5 km or less, implying mean vertical velocities of

  5. Negative spot sign in primary intracerebral hemorrhage: potential impact in reducing imaging.

    PubMed

    Romero, Javier M; Hito, Rania; Dejam, Andre; Ballesteros, Laia Sero; Cobos, Camilo Jaimes; Liévano, J Ortiz; Ciura, Viesha A; Barnaure, Isabelle; Ernst, Marielle; Liberato, Afonso P; Gonzalez, Gilberto R

    2017-02-01

    Intracerebral hemorrhage (ICH) is one of the most devastating and costly diagnoses in the USA. ICH is a common diagnosis, accounting for 10-15 % of all strokes and affecting 20 out of 100,000 people. The CT angiography (CTA) spot sign, or contrast extravasation into the hematoma, is a reliable predictor of hematoma expansion, clinical deterioration, and increased mortality. Multiple studies have demonstrated a high negative predictive value (NPV) for ICH expansion in patients without spot sign. Our aim is to determine the absolute NPV of the spot sign and clinical characteristics of patients who had ICH expansion despite the absence of a spot sign. This information may be helpful in the development of a cost effective imaging protocol of patients with ICH. During a 3-year period, 204 patients with a CTA with primary intracerebral hemorrhage were evaluated for subsequent hematoma expansion during their hospitalization. Patients with intraventricular hemorrhage were excluded. Clinical characteristics and antithrombotic treatment on admission were noted. The number of follow-up NCCT was recorded. Of the resulting 123 patients, 108 had a negative spot sign and 7 of those patients subsequently had significant hematoma expansion, 6 of which were on antithrombotic therapy. The NPV of the CTA spot sign was calculated at 0.93. In patients without antithrombotic therapy, the NPV was 0.98. In summary, the negative predictive value of the CTA spot sign for expansion of ICH, in the absence of antithrombotic therapy and intraventricular hemorrhage (IVH) on admission, is very high. These results have the potential to redirect follow-up imaging protocols and reduce cost.

  6. Structure-selective hot-spot Raman enhancement for direct identification and detection of trace penicilloic acid allergen in penicillin.

    PubMed

    Zhang, Liying; Jin, Yang; Mao, Hui; Zheng, Lei; Zhao, Jiawei; Peng, Yan; Du, Shuhu; Zhang, Zhongping

    2014-08-15

    Trace penicilloic acid allergen frequently leads to various fatal immune responses to many patients, but it is still a challenge to directly discriminate and detect its residue in penicillin by a chemosensing way. Here, we report that silver-coated gold nanoparticles (Au@Ag NPs) exhibit a structure-selective hot-spot Raman enhancement capability for direct identification and detection of trace penicilloic acid in penicillin. It has been demonstrated that penicilloic acid can very easily link Au@Ag NPs together by its two carboxyl groups, locating itself spontaneously at the interparticle of Au@Ag NPs to form strong Raman hot-spot. At the critical concentration inducing the nanoparticle aggregation, Raman-enhanced effect of penicilloic acid is ~60,000 folds higher than that of penicillin. In particular, the selective Raman enhancement to the two carboxyl groups makes the peak of carboxyl group at C6 of penicilloic acid appear as a new Raman signal due to the opening of β-lactam ring of penicillin. The surface-enhanced Raman scattering (SERS) nanoparticle sensor reaches a sensitive limit lower than the prescribed 1.0‰ penicilloic acid residue in penicillin. The novel strategy to examine allergen is more rapid, convenient and inexpensive than the conventional separation-based assay methods.

  7. The Hexapeptide Repeated Segment LIAGY is a Hot Spot of Aggregation of the Pseudomonas syringae Ice Nucleation Protein.

    PubMed

    Di Martino, Patrick

    2016-01-01

    Ice nucleation proteins (INPs) form oligomeric structures by self-assembly and aggregation. We looked for the presence of potential aggregating sequences inside the INP from Pseudomonas syringae by a computational approach with the AGGRESCAN, FOMDAMYLOID and TANGO softwares. A total of 38 hot spots of aggregation were predicted in the INP sequence: 7 localized in the Nterminal domain, 2 in the C-terminal region, 28 in the highly repetitive central (HRC) region and 1 shared between the HRC and the Carboxyl-terminus regions of the protein. All the hot spots of aggregation identified in the HRC domain overlapped a 8-residue low fidelity repeat including a LIAGYrelated sequence. We confirmed the predictions by an experimental approach using synthetic peptides corresponding to different parts of the INP central sequence, absorbance spectroscopy and fluorescence spectroscopy in the presence of Congo red (CR) or Thioflavin T (ThT), respectively. Peptide 620-SFIIAGYG-627 predicted to aggregate by the three softwares induced an increase in fluorescence of ThT. Peptide 729-GFKSILTAGY-738 predicted to aggregate by AGGRESCAN and FOLDAMYLOID induced a shift in the maximum of absorbance of CR. Peptide 1124-SVLTAGA-1130 predicted to aggregate only by TANGO did not interfere with CR absorbance or ThT fluorescence. In conclusion, the use of three aggregation prediction algorithms and two biochemical assays showed that the hexapeptide repeated segment LIAGY, previously shown to form a hairpin loop may be involved in the aggregation of the P. syringae INP.

  8. Hydrodynamic Mixing of Ablator Material into the Compressed Fuel and Hot Spot of Direct-Drive DT Cryogenic Implosions

    NASA Astrophysics Data System (ADS)

    Regan, S. P.; Goncharov, V. N.; Epstein, R.; Betti, R.; Bonino, M. J.; Cao, D.; Collins, T. J. B.; Campbell, E. M.; Forrest, C. J.; Glebov, V. Yu.; Harding, D. R.; Marozas, J. A.; Marshall, F. J.; McKenty, P. W.; Sangster, T. C.; Stoeckl, C.; Luo, R. W.; Schoff, M. E.; Farrell, M.

    2016-10-01

    Hydrodynamic mixing of ablator material into the compressed fuel and hot spot of direct-drive DT cryogenic implosions is diagnosed using time-integrated, spatially resolved xray spectroscopy. The laser drive ablates most of the 8- μm-thick CH ablator, which is doped with trace amounts of Ge ( 0.5 at.) and surrounds the cryogenic DT layer. A small fraction of the ablator material is mixed into the compressed shell and the hot spot by the ablation-front Rayleigh-Taylor hydrodynamic instability seeded by laser imprint, the target mounting stalk, and surface debris. The amount of mix mass inferred from spectroscopic analysis of the Ge K-shell emission will be presented. This material is based upon work supported by the Department Of Energy National Nuclear Security Administration under Award Number DE-NA0001944. Part of this work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344.

  9. Three-dimensional donut-like gold nanorings with multiple hot spots for surface-enhanced raman spectroscopy

    NASA Astrophysics Data System (ADS)

    Zheng, Mengjie; Zhu, Xupeng; Chen, Yiqin; Xiang, Quan; Duan, Huigao

    2017-01-01

    Seeking for the best possible substrates for surface-enhanced Raman spectroscopy (SERS) is of great interest for single-molecule-level detection applications. Lithographic plasmonic nanostructures are supposed to enable uniform enhancement and thus have attracted extensive interest in the past decade. In this work, we propose and demonstrate a lithographic three-dimensional (3D) donut-like gold nanoring array as a SERS substrate with an enhancement factor (EF) up to 3.84 × 107. This 3D nanoring array could be directly fabricated using electron-beam-lithography-defined templates without any additional lift-off process and thus promises ultraclean metallic surfaces. Meanwhile, the 3D configuration allows multiple hot spots for improving SERS performance compared to planar counterparts with comparable plasmon resonance position. Systematic experiments and simulations were conducted to gain understanding of the origin of the improved SERS performance. The results imply that the 3D donut-like gold nanorings with multiple hot spots can serve as a promising configuration for SERS applications.

  10. Manufacturing DNA microarrays of high spot homogeneity and reduced background signal

    PubMed Central

    Diehl, Frank; Grahlmann, Susanne; Beier, Markus; Hoheisel, Jörg D.

    2001-01-01

    Analyses on DNA microarrays depend considerably on spot quality and a low background signal of the glass support. By using betaine as an additive to a spotting solution made of saline sodium citrate, both the binding efficiency of spotted PCR products and the homogeneity of the DNA spots is improved significantly on aminated surfaces such as glass slides coated with the widely used poly-l-lysine or aminosilane. In addition, non-specific background signal is markedly diminished. Concomitantly, during the arraying procedure, the betaine reduces evaporation from the microtitre dish wells, which hold the PCR products. Subsequent blocking of the chip surface with succinic anhydride was improved considerably in the presence of the non-polar, non-aqueous solvent 1,2-dichloroethane and the acylating catalyst N-methylimidazole. This procedure prevents the overall background signal that occurs with the frequently applied aqueous solvent 1-methyl-2-pyrrolidone in borate buffer because of DNA that re-dissolves from spots during the blocking process, only to bind again across the entire glass surface. PMID:11266573

  11. Development of a Model to Predict the Primary Infection Date of Bacterial Spot (Xanthomonas campestris pv. vesicatoria) on Hot Pepper

    PubMed Central

    Kim, Ji-Hoon; Kang, Wee-Soo; Yun, Sung-Chul

    2014-01-01

    A population model of bacterial spot caused by Xanthomonas campestris pv. vesicatoria on hot pepper was developed to predict the primary disease infection date. The model estimated the pathogen population on the surface and within the leaf of the host based on the wetness period and temperature. For successful infection, at least 5,000 cells/ml of the bacterial population were required. Also, wind and rain were necessary according to regression analyses of the monitored data. Bacterial spot on the model is initiated when the pathogen population exceeds 1015 cells/g within the leaf. The developed model was validated using 94 assessed samples from 2000 to 2007 obtained from monitored fields. Based on the validation study, the predicted initial infection dates varied based on the year rather than the location. Differences in initial infection dates between the model predictions and the monitored data in the field were minimal. For example, predicted infection dates for 7 locations were within the same month as the actual infection dates, 11 locations were within 1 month of the actual infection, and only 3 locations were more than 2 months apart from the actual infection. The predicted infection dates were mapped from 2009 to 2012; 2011 was the most severe year. Although the model was not sensitive enough to predict disease severity of less than 0.1% in the field, our model predicted bacterial spot severity of 1% or more. Therefore, this model can be applied in the field to determine when bacterial spot control is required. PMID:25288995

  12. Development of a Model to Predict the Primary Infection Date of Bacterial Spot (Xanthomonas campestris pv. vesicatoria) on Hot Pepper.

    PubMed

    Kim, Ji-Hoon; Kang, Wee-Soo; Yun, Sung-Chul

    2014-06-01

    A population model of bacterial spot caused by Xanthomonas campestris pv. vesicatoria on hot pepper was developed to predict the primary disease infection date. The model estimated the pathogen population on the surface and within the leaf of the host based on the wetness period and temperature. For successful infection, at least 5,000 cells/ml of the bacterial population were required. Also, wind and rain were necessary according to regression analyses of the monitored data. Bacterial spot on the model is initiated when the pathogen population exceeds 10(15) cells/g within the leaf. The developed model was validated using 94 assessed samples from 2000 to 2007 obtained from monitored fields. Based on the validation study, the predicted initial infection dates varied based on the year rather than the location. Differences in initial infection dates between the model predictions and the monitored data in the field were minimal. For example, predicted infection dates for 7 locations were within the same month as the actual infection dates, 11 locations were within 1 month of the actual infection, and only 3 locations were more than 2 months apart from the actual infection. The predicted infection dates were mapped from 2009 to 2012; 2011 was the most severe year. Although the model was not sensitive enough to predict disease severity of less than 0.1% in the field, our model predicted bacterial spot severity of 1% or more. Therefore, this model can be applied in the field to determine when bacterial spot control is required.

  13. Hot moments and hot spots in hyporheic nutrient transformation - To what degree does small-scale variability control stream-reach attenuation potential?

    NASA Astrophysics Data System (ADS)

    Krause, S.; Blume, T.; Binley, A.; Heathwaite, L.; Cassidy, N. J.; Munz, M.; Tecklenburg, C.; Kaeser, D.

    2011-12-01

    Concentrations of nutrients and contaminants in up-welling groundwater can significantly change along the passage through highly heterogeneous streambed sediments with substantial implications for the quality of connected surface water bodies. This study presents investigations into the physical drivers and chemical controls of nutrient transport and transformation at the aquifer-river interfaces of two upland and lowland UK rivers. It combines the application of in-stream geophysical exploration techniques, multi-level mini-piezometer networks, active and passive heat tracing methods (including fibre-optic distributed temperature sensing - FO-DTS) for identifying hyporheic exchange fluxes and residence time distributions with multi-scale approaches of hyporheic pore water sampling and reactive tracers for analysing the patterns of streambed redox conditions and chemical transformation rates. The analysis of hyporheic pore water from nested multi-level mini piezometers and passive gel probe samplers revealed significant spatial variability in streambed redox conditions and concentration changes of nitrogen species, dissolved oxygen and bioavailable organic carbon. Hot spots of increased nitrate attenuation were identified beneath semi-confining peat lenses in the streambed of the investigated lowland river. The intensity of concentration changes underneath the confining peat pockets correlated with the state of anoxia in the pore water as well as the supply of organic carbon and hyporheic residence times. In contrast, at locations where flow inhibiting peat layers were absent or disrupted - fast exchange between aquifer and river caused a break through of nitrate without significant concentration changes along the hyporheic flow path. Fibre-optic distributed temperature sensor networks and streambed electric resistivity tomography were applied for identifying exchange flow patterns between groundwater and surface water in dependency of streambed structural

  14. Professional- Amateur Astronomer Partnerships in Scientific Research: The Re-emergence of Jupiter's 5-Micron Hot Spots

    NASA Astrophysics Data System (ADS)

    Yanamandra-Fisher, P. A.

    2012-12-01

    The night sky, with all its delights and mysteries, enthrall professional and amateur astronomers alike. The discrete data sets acquired by professional astronomers via their approved observing programs at various national facilities are supplemented by the nearly daily observations of the same celestial object by amateur astronomers around the world. The emerging partnerships between professional and dedicated amateur astronomers rely on creating a niche for long timeline of multispectral remote sensing. "Citizen Astronomy" can be thought of as the paradigm shift transforming the nature of observational astronomy. In the past decade, it is the collective observations and their analyses by the ever-increasing global network of amateur astronomers that has discovered interesting phenomena and provided the reference backdrop for observations by ground-based professional astronomers and spacecraft missions. We shall present results from our collaborations to observe the recent global upheaval on Jupiter for the past five years and illustrate the strong synergy between the two groups. Global upheavals on Jupiter involve changes in the albedo of entire axisymmetric regions, lasting several years, with the last two occurring in 1989 and 2006. Against this backdrop of planetary-scale changes, discrete features such as the Great Red Spot (GRS), and other vortices exhibit changes on shorter spatial- and time-scales. One set of features we are currently tracking is the variability of the discrete equatorial 5-μm hot spots, semi-evenly spaced in longitude and confined to a narrow latitude band centered at 6.5°N (southern edge of the North Equatorial Belt, NEB), abundant in Voyager images (1980-1981). Tantalizingly similar patterns were observed in the visible (bright plumes and blue-gray regions), where reflectivity in the red is anti-correlated with 5-μm thermal radiance. During the recent NEB fade (2011 - early 2012), however, these otherwise ubiquitous features were

  15. Spallation as a dominant source of pusher-fuel and hot-spot mix in inertial confinement fusion capsules

    SciTech Connect

    Orth, Charles D.

    2016-02-23

    We suggest that a potentially dominant but previously neglected source of pusher-fuel and hot-spot “mix” may have been the main degradation mechanism for fusion energy yields of modern inertial confinement fusion (ICF) capsules designed and fielded to achieve high yields — not hydrodynamic instabilities. This potentially dominant mix source is the spallation of small chunks or “grains” of pusher material into the fuel regions whenever (1) the solid material adjacent to the fuel changes its phase by nucleation, and (2) this solid material spalls under shock loading and sudden decompression. Finally, we describe this mix mechanism, support it with simulations and experimental evidence, and explain how to eliminate it and thereby allow higher yields for ICF capsules and possibly ignition at the National Ignition Facility.

  16. Spallation as a dominant source of pusher-fuel and hot-spot mix in inertial confinement fusion capsules

    DOE PAGES

    Orth, Charles D.

    2016-02-23

    We suggest that a potentially dominant but previously neglected source of pusher-fuel and hot-spot “mix” may have been the main degradation mechanism for fusion energy yields of modern inertial confinement fusion (ICF) capsules designed and fielded to achieve high yields — not hydrodynamic instabilities. This potentially dominant mix source is the spallation of small chunks or “grains” of pusher material into the fuel regions whenever (1) the solid material adjacent to the fuel changes its phase by nucleation, and (2) this solid material spalls under shock loading and sudden decompression. Finally, we describe this mix mechanism, support it with simulationsmore » and experimental evidence, and explain how to eliminate it and thereby allow higher yields for ICF capsules and possibly ignition at the National Ignition Facility.« less

  17. Exosomes surf on filopodia to enter cells at endocytic hot spots, traffic within endosomes, and are targeted to the ER

    PubMed Central

    Hean, Justin; Trojer, Dominic; Steib, Emmanuelle; von Bueren, Stefan; Graff-Meyer, Alexandra; Genoud, Christel; Martin, Katrin; Pizzato, Nicolas; Voshol, Johannes; Morrissey, David V.; Andaloussi, Samir E.L.; Wood, Matthew J.

    2016-01-01

    Exosomes are nanovesicles released by virtually all cells, which act as intercellular messengers by transfer of protein, lipid, and RNA cargo. Their quantitative efficiency, routes of cell uptake, and subcellular fate within recipient cells remain elusive. We quantitatively characterize exosome cell uptake, which saturates with dose and time and reaches near 100% transduction efficiency at picomolar concentrations. Highly reminiscent of pathogenic bacteria and viruses, exosomes are recruited as single vesicles to the cell body by surfing on filopodia as well as filopodia grabbing and pulling motions to reach endocytic hot spots at the filopodial base. After internalization, exosomes shuttle within endocytic vesicles to scan the endoplasmic reticulum before being sorted into the lysosome as their final intracellular destination. Our data quantify and explain the efficiency of exosome internalization by recipient cells, establish a new parallel between exosome and virus host cell interaction, and suggest unanticipated routes of subcellular cargo delivery. PMID:27114500

  18. Unusual seismic activity in 2011 and 2013 at the submarine volcano Rocard, Society hot spot (French Polynesia)

    NASA Astrophysics Data System (ADS)

    Talandier, Jacques; Hyvernaud, Olivier; Maury, René C.

    2016-05-01

    We analyze two seismic events that occurred on 27 May 2011 and 29 April 2013 at the Rocard submarine volcano which overlies the Society hot spot. The Polynesian Seismic Network recorded for the first time unusual associated short- and long-period signals, with perfectly monochromatic (0.0589 Hz) Rayleigh wave trains of long period and duration. None of the numerous observations of long-period (10-30 s) signals previously associated with volcanic activity in Japan, Italy, Mexico, Indonesia, Antarctica, and the Hawaiian Islands have the characteristics we observed at Rocard. We propose a tentative model for these unusual and rather enigmatic signals, in which the movement of lava excited the resonance of a shallow open conduit under a high hydrostatic pressure of ~400 bars.

  19. Fine-scale genetic variation and evolution of West Nile Virus in a transmission "hot spot" in suburban Chicago, USA.

    PubMed

    Bertolotti, Luigi; Kitron, Uriel D; Walker, Edward D; Ruiz, Marilyn O; Brawn, Jeffrey D; Loss, Scott R; Hamer, Gabriel L; Goldberg, Tony L

    2008-05-10

    Mosquitoes and birds were sampled for West Nile virus (WNV) in suburban Chicago, USA, in a "hot spot" of arboviral transmission. Viral genetic diversity within this area was similar to that within Illinois and the United States. Diversity was higher among viruses from mosquitoes than from birds, higher among viruses from birds in urban "green spaces" than from birds in residential areas, but lower among viruses from mosquitoes in green spaces than from mosquitoes in residential areas. Viral transmission was distance-limited, as evidenced by decreasing autocorrelation of WNV sequences with increasing geographic separation. The evolutionary rate of WNV within the study area between 21 July and 4 October 2005 was ten times higher than that for WNV across North America between 2002 and 2005. These results indicate that WNV transmission and evolutionary dynamics can vary seasonally and in response to fine-scale environmental conditions and landscape characteristics related to urbanization.

  20. A Two-Dimensional Hydrocode to Study the Deceleration Phase and Hot-Spot Formation in Inertial Confinement Fusion Implosions

    NASA Astrophysics Data System (ADS)

    Woo, K. M.; Bose, A.; Betti, R.; Delettrez, J. A.; Anderson, K. S.; Epstein, R.

    2014-10-01

    A hydrocode was developed to study the final stage of an implosion starting from the coasting phase, including hot-spot formation and thermonuclear burn. Recently, a flux-limited multigroup diffusion approximation model has been added to study the transport of radiation energy in the deceleration phase of a spherical inertial confinement fusion target. Numerical results from the multigroup model indicate a good agreement with LILAC 1-D simulations. The code is used to study effects of radiation on the hotspot formation and distortion. Results from 2-D runs are presented and the effect of radiation transport on the deceleration-phase Rayleigh-Taylor instability is discussed. This material is based upon work supported by the Department of Energy National Nuclear Security Administration under Award Number DE-NA0001944 and the Office of Fusion Energy Sciences Number DE-FG02-04ER54786.

  1. Cool Temperatures near the Homopause of the 8-μm North Polar Hot Spot of Jupiter

    NASA Astrophysics Data System (ADS)

    Kim, Sang J.; Geballe, Thomas R.; Greathouse, Thomas K.; Yung, Yuk; Miller, Steve; Orton, Glenn S.; minh, young

    2016-10-01

    We have observed the 8-μm north-polar hot spot (8NPHS) of Jupiter at 3 μm with GNIRS, the Gemini Near-Infrared Spectrograph at Gemini North on January 13, 2013(UT), and at 8 μm on Feburary 6, 2013(UT) with TEXES, the Texas Echelon Cross Echelle Spectrograph at the NASA IRTF. We have derived rather cool homopause temperatures of 180 - 250 K for the 8NPHS by fitting CH4 emission models to 3- and 8-μm spectra of the 8NPHS. From the fits, we also found that CH4 mixing ratios at the 8NPHS are consistent with those reported by Kim et al. (Icarus, 237, 42, 2014) in equatorial regions. We will discuss possible implications of the relatively cool 8NPHS homopause, which was unexpected.

  2. The Great Cormorant (Phalacrocorax carbo) colony as a "hot spot" of nitrous oxide (N2O) emission in central Japan

    NASA Astrophysics Data System (ADS)

    Mizota, Chitoshi; Noborio, Kosuke; Mori, Yoshiaki

    2012-09-01

    Unusual high soil fluxes up to ca. 500 mg N2O m-2 h-1 emission were associated with a continued breeding/roosting colony of Great Cormorant in central Japan. This flux is nearly two-orders of magnitude higher than those hitherto documented. The flux was markedly dependent upon the soil surface temperature, i.e., higher in April-October during the prevailing high air temperatures, as compared with November to March. Integrated input of fecal N at rearing and fledging stages of chicks followed by coupled mineralization, nitrification and subsequently denitrification processes under humid and temperate regimes is responsible for such an unusual flux. The Great Cormorant colony serves as a "hot spot" of N2O emission of natural origin.

  3. Ultrasensitive SERS detection of trinitrotoluene through capillarity-constructed reversible hot spots based on ZnO-Ag nanorod hybrids

    NASA Astrophysics Data System (ADS)

    He, Xuan; Wang, Hui; Li, Zhongbo; Chen, Dong; Liu, Jiahui; Zhang, Qi

    2015-04-01

    A simple and efficient self-approach strategy was used to apply ultrasensitivity and self-revive ZnO-Ag hybrid surface-enhanced Raman scattering (SERS) sensors for the highly sensitive and selective detection of explosive TNT in both solution and vapour conditions. The good ultrasensitive sensing performance is a result of the abundant Raman hot spots, which were spontaneously formed in a reversible way by the self-approaching of flexible ZnO-Ag hybrid nanorods driven by the capillary force of solvent evaporation. Moreover, the enhancement effect was repeatedly renewed by the reconstruction of molecular bridges, which could selectively detect TNT with a lower limit of 4 × 10-14 M. In addition, TNT vapor was also tested under this sensor, whereby once the ZnO-Ag NRs hybrid substrate was dipped in TNT, this substrate could detect the existence of TNT even in 5 detection cycles via a capillarity-constructed reversible hot spots approach. Compared with other pure Ag-based SERS sensors, this ZnO-Ag hybrid SERS sensor could rapidly self-revive SERS-activity by simple UV light irradiation and could retain stable SERS sensitivity for one month when used for TNT detection. This stable and ultrasensitive SERS substrate demonstrates a new route to eliminate the oxidized inactive problem of traditional Ag-based SERS substrates and suggests promising use in the applications of such hybrids as real-time online sensors for explosives detection.A simple and efficient self-approach strategy was used to apply ultrasensitivity and self-revive ZnO-Ag hybrid surface-enhanced Raman scattering (SERS) sensors for the highly sensitive and selective detection of explosive TNT in both solution and vapour conditions. The good ultrasensitive sensing performance is a result of the abundant Raman hot spots, which were spontaneously formed in a reversible way by the self-approaching of flexible ZnO-Ag hybrid nanorods driven by the capillary force of solvent evaporation. Moreover, the enhancement

  4. DNase I-hypersensitive sites and transcription factor-binding motifs within the mouse E beta meiotic recombination hot spot.

    PubMed

    Shenkar, R; Shen, M H; Arnheim, N

    1991-04-01

    The second intron of the E beta gene in the mouse major histocompatibility complex is the site of a meiotic recombination hot spot. We detected two DNase I-hypersensitive sites in this intron in meiotic cells isolated from mouse testes. One site appears to be constitutive and is found in other tissues regardless of whether or not they express the E beta gene. Near this hypersensitive site are potential binding motifs for H2TF1/KBF1, NF kappa B, and octamer transcription factors. Gel retardation studies with mouse lymphoma cell nuclear extracts confirmed that each of these motifs is capable of binding protein. The binding of transcription factors may contribute to the enhancement of recombination potential by altering chromatin structure and increasing the accessibility of the DNA to the recombination machinery.

  5. The central west Saharan dust hot spot and its relation to African easterly waves and extratropical disturbances

    NASA Astrophysics Data System (ADS)

    Knippertz, Peter; Todd, Martin C.

    2010-06-01

    A vast, arid, and virtually uninhabited region covering eastern Mauritania and northern Mali appears in satellite estimates of dust loading as the global maximum during boreal summer. Here the complex meteorological conditions that create this central western Sahara (CWS) dust hot spot are investigated on the basis of regression analyses and case study examples using a wide range of satellite analysis products. The results confirm the importance of African easterly waves (AEWs), previously hypothesized on the basis of case studies. The main ingredients to create this connection are as follows. (1) Strengthened southerlies to the east of an AEW trough advect moist air into the southern Sahara. Daytime heating and orography trigger moist convection in this air mass. Strong evaporation in dry midlevel air generates extended cold pools and haboob dust storms. (2) Vertical mixing brings dust into the upper parts of the deep Saharan boundary layer, from where it can be advected back into the CWS region with the northerlies ahead of the next AEW trough. (3) If the associated surface vortex is strong enough, more dust emission occurs within or just upstream of the CWS. (4) High-amplitude waves in the subtropics enhance the meridional flow associated with the AEW. Although there is a considerable case-to-case variability, it can be concluded that AEWs in concert with extratropical disturbances substantially contribute to the hot spot creation both through emission and the organization of transport. Disagreement between different satellite products and the presence of clouds complicate the analysis and underline the necessity for new observations.

  6. Mutation {open_quotes}hot spots{close_quotes} in the iduronate-sulfatase gene, and evidence for a pseudogene

    SciTech Connect

    Rathmann, M.; Bunge, S.; Gal, A.

    1994-09-01

    Mucopolysaccharidosis type II (Hunter syndrome), iduronate-sulfatase (IDS) deficiency, is an X-linked disorder. Analysis of genomic DNA and cDNA from a total of 60 patients was performed in our laboratory during the last two years. In each case the gene defect was identified, resulting in 41 different mutations, including nonsense, missense, and splice site-point mutations, deletions of various sizes, and a 14 bp duplication. While in only 20% of the patients the whole IDS gene is deleted or largely altered, in about 80% of the cases small deletions (up to 17 bp) and point mutations were found. Of the 9 IDS gene exons, exons III, VIII, and IX harbor 78% of all point mutations, whereas 35% of these latter were found in exon III. Obviously, codon 374 in exon VIII is another mutation {open_quotes}hot spot{close_quotes} as the same point mutation has been found in 7 unrelated patients. Two further {open_quotes}hot spots{close_quotes} are at codons 443 and 468 in exon IX with five different mutations each. Remarkably, all mutations in exon III were found to be heterozygous in the genomic DNA but not in the IDS cDNA of the patients. Of the more than 200 unaffected male controls studied by us, two are heterozygotes for two different point mutations in exon III. Contamination of the samples can be excluded and we hypothesize the existence of a pseudogene that consists of at least exon III. As three patients with submicroscopic deletion and Hunter syndrome show no IDS hybridization signal in Southern analysis, we speculate that the putative pseudogene is in the neighborhood of the functional gene.

  7. Unequal exchange at the Charcot-Marie-Tooth disease type 1A recombination hot-spot is not elevated above the genome average rate.

    PubMed

    Han, L L; Keller, M P; Navidi, W; Chance, P F; Arnheim, N

    2000-07-22

    An increasing number of human diseases and syndromes are being found to result from micro-duplications or microdeletions arising from meiotic recombination between homologous repeats on the same chromosome. The first microduplication syndrome delineated, Charcot-Marie-Tooth disease type 1A (CMT1A), results from unequal crossing over between two >98% identical 24 kb repeats (CMT1A-REPs) on chromosome 17. In addition to its medical significance, the CMT1A region has features that make it a unique resource for detailed analysis of human unequal recombination. Previous studies of CMT1A patients showed that the majority of unequal crossovers occurred within a small region (<1 kb) of the REPs suggesting the presence of a recombination hot-spot. We directly measured the frequency of unequal recombination in the hot-spot region using sperm from four normal individuals. Surprisingly, unequal recombination between the REPs occurs at a rate no greater than the average rate for the male genome (approximately 1 cM/Mb) and is the same as that expected for equally aligned REPs. This conclusion extends to humans the findings in yeast that recombination between repeated sequences far apart on the same chromosome may occur at similar frequencies to allelic recombination. Finally, the CMT1A hot-spot stands in sharp contrast to the human MS32 mini-satellite-associated hot-spot that exhibits highly enhanced recombination initiation in addition to positional specificity. One possibility is that the CMT1A hot-spot may consist of a region with genome average recombination potential embedded within a recombination cold-spot.

  8. High-Tc micro and nano-constrictions modeling: hot spot approach for DC characteristics and HEB THz mixer performance

    NASA Astrophysics Data System (ADS)

    Ladret, Romain G.; Dégardin, Annick F.; Kreisler, Alain J.

    2014-05-01

    High-TC hot electron bolometers (HEB) are promising THz mixers due to their expected wide bandwidth, large mixing gain, and low intrinsic noise. We have simulated the characteristics of YBaCuO HEBs with a hot spot model usually dedicated to low-TC phonon cooled devices. With respect to e.g., NbN, the high-TC specificities are mainly arising from the large values of YBaCuO phonon thermal conductivity, and the film to MgO substrate phonon escape time. The consequent effects on the electron temperature profiles along the YBaCuO constriction and the current voltage DC characteristics are considered. The conversion gain G and noise temperature TN were computed for two constriction dimensions. For a 100 nm long × 100 nm wide × 10 nm thick constriction at 9 microwatt local oscillator (LO) power, the expected double sideband (DSB) TN = 1520 K (G = -13.7 dB). For a larger (but more realistic according to YBaCuO aging effects) 400 nm long × 400 nm wide × 35 nm thick constriction, minimum TN = 1210 K DSB at 35 microwatt LO power (G = -13.1 dB).

  9. 46 CFR 148.250 - Direct reduced iron (DRI); hot-molded briquettes.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... 46 Shipping 5 2014-10-01 2014-10-01 false Direct reduced iron (DRI); hot-molded briquettes. 148.250 Section 148.250 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) DANGEROUS... Materials § 148.250 Direct reduced iron (DRI); hot-molded briquettes. (a) Before loading DRI...

  10. 46 CFR 148.250 - Direct reduced iron (DRI); hot-molded briquettes.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... 46 Shipping 5 2013-10-01 2013-10-01 false Direct reduced iron (DRI); hot-molded briquettes. 148.250 Section 148.250 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) DANGEROUS... Materials § 148.250 Direct reduced iron (DRI); hot-molded briquettes. (a) Before loading DRI...

  11. 46 CFR 148.250 - Direct reduced iron (DRI); hot-molded briquettes.

    Code of Federal Regulations, 2011 CFR

    2011-10-01

    ... 46 Shipping 5 2011-10-01 2011-10-01 false Direct reduced iron (DRI); hot-molded briquettes. 148.250 Section 148.250 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) DANGEROUS... Materials § 148.250 Direct reduced iron (DRI); hot-molded briquettes. (a) Before loading DRI...

  12. 46 CFR 148.250 - Direct reduced iron (DRI); hot-molded briquettes.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... 46 Shipping 5 2012-10-01 2012-10-01 false Direct reduced iron (DRI); hot-molded briquettes. 148.250 Section 148.250 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY (CONTINUED) DANGEROUS... Materials § 148.250 Direct reduced iron (DRI); hot-molded briquettes. (a) Before loading DRI...

  13. 40 CFR 93.116 - Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots).

    Code of Federal Regulations, 2013 CFR

    2013-07-01

    ... 40 Protection of Environment 21 2013-07-01 2013-07-01 false Criteria and procedures: Localized CO....116 Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots). (a) This paragraph applies at all times. The FHWA/FTA project must not cause or contribute to any new localized CO, PM10,...

  14. 40 CFR 93.116 - Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots).

    Code of Federal Regulations, 2012 CFR

    2012-07-01

    ... 40 Protection of Environment 21 2012-07-01 2012-07-01 false Criteria and procedures: Localized CO....116 Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots). (a) This paragraph applies at all times. The FHWA/FTA project must not cause or contribute to any new localized CO, PM10,...

  15. 40 CFR 93.116 - Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots).

    Code of Federal Regulations, 2014 CFR

    2014-07-01

    ... 40 Protection of Environment 20 2014-07-01 2013-07-01 true Criteria and procedures: Localized CO....116 Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots). (a) This paragraph applies at all times. The FHWA/FTA project must not cause or contribute to any new localized CO, PM10,...

  16. 40 CFR 93.116 - Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots).

    Code of Federal Regulations, 2011 CFR

    2011-07-01

    ... 40 Protection of Environment 20 2011-07-01 2011-07-01 false Criteria and procedures: Localized CO....116 Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots). (a) This paragraph applies at all times. The FHWA/FTA project must not cause or contribute to any new localized CO, PM10,...

  17. 40 CFR 93.116 - Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots).

    Code of Federal Regulations, 2010 CFR

    2010-07-01

    ... 40 Protection of Environment 20 2010-07-01 2010-07-01 false Criteria and procedures: Localized CO....116 Criteria and procedures: Localized CO, PM10, and PM2.5 violations (hot-spots). (a) This paragraph applies at all times. The FHWA/FTA project must not cause or contribute to any new localized CO, PM10,...

  18. Implications of a nonlinear 40Ar/39Ar age progression along the Louisville seamount trail for models of fixed and moving hot spots

    NASA Astrophysics Data System (ADS)

    Koppers, Anthony A. P.; Duncan, Robert A.; Steinberger, Bernhard

    2004-06-01

    The Louisville seamount trail has been recognized as one of the key examples of hot spot volcanism, comparable to the classic volcanic Hawaiian-Emperor lineaments. The published total fusion 40Ar/39Ar data of Watts et al. [1988] showed an astonishing linear age progression, firmly establishing Louisville as a fixed hot spot in the South Pacific mantle. We report new 40Ar/39Ar ages based on high-resolution incremental heating 40Ar/39Ar dating for the same group of samples, showing a marked increase in both precision and accuracy. One of the key findings in our reexamination is that the age progression is not linear after all. The new data show a significantly decreased "apparent" plate velocity for the Louisville seamount trail older than 62 Ma but confirm the linear trend between 47 Ma and the present day (although based on only three samples over 2150 km). The most recent volcanic activity in the Louisville seamount trail has now been dated at 1.11 ± 0.04 Ma for the most southeastern seamount located at 50°26'S and 139°09'W. These results indicate that the Louisville age progression should be interpreted on the basis of both plate and hot spot motion. In this paper we examine our new results in conjunction with the numerical mantle flow models of [2004] that also predict marked deviations from simple linear age progressions. With these models we can achieve a good fit to the geometry of both the Hawaiian and Louisville seamount trails and their age progressions as well as the ˜15° paleolatitudinal shift observed by [2003] for the Hawaiian hot spot between 80 and 47 Ma. If the model is restricted to Pacific hot spots only, we can improve the fit to the nonlinear age trend for the Louisville seamount trail by allowing an additional rotation change of the Pacific plate around 62 Ma and by decreasing the initiation age of the Louisville plume from 120 to 90 Ma. This improved model features a significant eastward hot spot motion of ˜5° between 80 and 30 Ma for

  19. Testing the nature of the supermassive black hole candidate in SgrA* with light curves and images of hot spots

    SciTech Connect

    Li, Zilong; Kong, Lingyao; Bambi, Cosimo

    2014-06-01

    General relativity makes clear predictions about the spacetime geometry around black holes. In the near future, new facilities will have the capability to explore the metric around SgrA*, the supermassive black hole candidate at the center of our Galaxy, and to open a new window to test the Kerr black hole hypothesis. In this paper, we compute light curves and images associated with compact emission regions (hot spots) orbiting around Kerr and non-Kerr black holes. We study how the analysis of the properties of the radiation emitted by a hot spot can be used to test the Kerr nature of SgrA*. We find that the sole observation of the hot spot light curve can at most constrain a combination of the black hole spin and of possible deviations from the Kerr solution. This happens because the same orbital frequency around a Kerr black hole can be found for a non-Kerr object with a different spin parameter. Second order corrections in the light curve due to the background geometry are typically too small to be identified. While the observation of the hot spot centroid track can potentially bound possible deviations from the Kerr solution, that is out of reach for the near future for the Very Large Telescope Interferometer instrument GRAVITY. The Kerr black hole hypothesis could really be tested in the case of the discovery of a radio pulsar in a compact orbit around SgrA*. Radio observations of such a pulsar would provide precise estimates of the mass and the spin of SgrA*, and the combination of these measurements (probing the weak field) with the hot spot light curve information (probing the strong field) may constrain/find possible deviations from the Kerr solution with quite good precision.

  20. A spatial analysis of population dynamics and climate change in Africa: potential vulnerability hot spots emerge where precipitation declines and demographic pressures coincide

    USGS Publications Warehouse

    López-Carr, David; Pricope, Narcisa G.; Aukema, Juliann E.; Jankowska, Marta M.; Funk, Christopher C.; Husak, Gregory J.; Michaelsen, Joel C.

    2014-01-01

    We present an integrative measure of exposure and sensitivity components of vulnerability to climatic and demographic change for the African continent in order to identify “hot spots” of high potential population vulnerability. Getis-Ord Gi* spatial clustering analyses reveal statistically significant locations of spatio-temporal precipitation decline coinciding with high population density and increase. Statistically significant areas are evident, particularly across central, southern, and eastern Africa. The highly populated Lake Victoria basin emerges as a particularly salient hot spot. People located in the regions highlighted in this analysis suffer exceptionally high exposure to negative climate change impacts (as populations increase on lands with decreasing rainfall). Results may help inform further hot spot mapping and related research on demographic vulnerabilities to climate change. Results may also inform more suitable geographical targeting of policy interventions across the continent.

  1. Volcanic lava flow hot-spots monitoring from remote sensing data using neural networks

    NASA Astrophysics Data System (ADS)

    Piscini, Alessandro; Lombardo, Valerio

    2014-05-01

    Neural networks are an effective and well-established technique for the classification of satellite images. In addition, once well trained, they prove to be very fast in the application stage. Furthermore satellite remote sensing is a very effective and safe way to monitor volcanic eruptions in order to safeguard the environment and the people affected by such natural hazards. In our study a Back Propagation Neural Network was used for the recognition of thermal anomalies affecting hot lava pixels in multispectral remote sensed images. The network was trained using the three thermal channels of the Advanced Very High Resolution Radiometer (AVHHR) sensor as inputs and the corresponding values of heat flux, estimated using a two thermal component model, as reference outputs. As a case study the volcano Etna (Eastern Sicily, Italy) was chosen and the neural network was trained with a time series of AVHRR images belonging to an effusive eruption which took place during the month of July 2006, and validated on three independent data sets of images of the same eruption and on two relative to an eruption occurred the following month. Whilst for both night-time and day-time validation images the neural network identified the image pixels affected by hot lava with a 100% success rate, for the daytime images also adjacent pixels were included, apparently not interested by lava flow. Despite these performance differences under different illumination conditions, the proposed method can be considered effective both in terms of classification accuracy and generalization capability. In particular our approach proved to be robust in the rejection of false positives, often corresponding to noisy or cloudy pixels, whose presence in multispectral images can often undermine the performance of traditional classification algorithms. Future work shall address application of the proposed method to data from different eruptions provided by the MODIS sensor aboard the Terra and Aqua

  2. Early detection of production deficit hot spots in semi-arid environment using FAPAR time series and a probabilistic approach

    NASA Astrophysics Data System (ADS)

    Meroni, M.; Fasbender, D.; Kayitakire, F.; Pini, G.; Rembold, F.; Urbano, F.; Verstraete, M. M.

    2013-12-01

    Timely information on vegetation development at regional scale is needed in arid and semiarid African regions where rainfall variability leads to high inter-annual fluctuations in crop and pasture productivity, as well as to high risk of food crisis in the presence of severe drought events. The present study aims at developing and testing an automatic procedure to estimate the probability of experiencing a seasonal biomass production deficit solely on the basis of historical and near real-time remote sensing observations. The method is based on the extraction of vegetation phenology from SPOT-VEGTATION time series of the Fraction of Absorbed Photosynthetically Active Radiation (FAPAR) and the subsequent computation of seasonally cumulated FAPAR as a proxy for vegetation gross primary production. Within season forecasts of the overall seasonal performance, expressed in terms of probability of experiencing a critical deficit, are based on a statistical approach taking into account two factors: i) the similarity between the current FAPAR profile and past profiles observable in the 15 years FAPAR time series; ii) the uncertainty of past predictions of season outcome as derived using jack-knifing technique. The method is applicable at the regional to continental scale and can be updated regularly during the season (whenever a new satellite observation is made available) to provide a synoptic view of the hot spots of likely production deficit. The specific objective of the procedure described here is to deliver to the food security analyst, as early as possible within the season, only the relevant information (e.g., masking out areas without active vegetation at the time of analysis), expressed through a reliable and easily interpretable measure of impending risk. Evaluation of method performance and examples of application in the Sahel region are discussed.

  3. Juan Fernández Ridge (Nazca Plate): petrology and thermochronology of a rejuvenated hot spot trail

    NASA Astrophysics Data System (ADS)

    Reyes, J.; Lara, L. E.

    2012-04-01

    The Juan Fernández Ridge on the oceanic Nazca plate is thought to be a classic hot spot trail because of the apparent westward rejuvenation of the eruptive ages. However, geochronological data is still scarce and there are a few constrains to support this hypothesis like the ca. 9 Ma Ar-Ar age of the O'Higgins seamount (115 km from the Chile-Perú trench), some published K-Ar ages of ca. 3-4 Ma in Robinson Crusoe island (580 km from the trench) and ca. 1 Ma in Alejandro Selkirk (180 km further west). New reconnaissance K-Ar ages and specially the ongoing Ar-Ar dating effort in Robinson Crusoe define a ca. 1-4 Ma time span, which partially overlap with the age of Alejandro Selkirk, breaking the expected age progression given that the Nazca plate moves eastwards at ca. 6-8 cm/yr. In addition, new geological mapping shows a sharp unconformity between the older (ca. 4 Ma), strongly altered sequences and the more recent (ca. 1 Ma), post-erosional volcanic piles, where the proximal facies are still preserved. Petrological evidence also supports this evolution pattern. In fact, the partially altered older sequence is tholeiitic (Ba/Yb=12.70; La/Yb=8.12; Ba/Y=6.51; Ba/Zr=0.89). The shield stage (ca. 1-3 Ma) is transicional from tholeiitic to alkaline (Ba/Yb=18.07-8.32; La/Yb=4.59-9.84; Ba/Y=4.24-8.18; Ba/Zr=0.73-1.09) and the younger (ca. 1 Ma) is mostly alkaline (Ba/Yb=38.15; La/Yb=15.66; Ba/Y=20.27; Ba/Zr=2.31). A fixed deep-mantle plume origin for Pacific hot spots has been widely debated and concurrent phenomena arose as a possible explanation for non-linear age progressions and/or long-lived volcanic activity. In fact, intraplate regional tectonics, plume displacement, and mantle heterogeneities could be the main factor of the ridge architecture or the mask for a first-order linear trend. An ongoing mapping and dating effort is aimed to understand the evolution of the Juan Fernández Ridge, testing the main hypothesis. This research is supported by FONDECYT Project

  4. Source apportionment of size resolved particulate matter at a European air pollution hot spot.

    PubMed

    Pokorná, P; Hovorka, J; Klán, M; Hopke, P K

    2015-01-01

    Positive Matrix Factorization-PMF was applied to hourly resolved elemental composition of fine (PM0.15-1.15) and coarse (PM1.15-10) aerosol particles to apportion their sources in the airshed of residential district, Ostrava-Radvanice and Bartovice in winter 2012. Multiple-site measurement by PM2.5 monitors complements the source apportionment. As there were no statistical significant differences amongst the monitors, the source apportionment derived for the central site data is expected to apply to whole residential district. The apportioned sources of the fine aerosol particles were coal combustion (58.6%), sinter production-hot phase (22.9%), traffic (15%), raw iron production (3.5%), and desulfurization slag processing (<0.5%) whilst road dust (47.3%), sinter production-cold phase (27.7%), coal combustion (16.8%), and raw iron production (8.2%) were resolved being sources of the coarse aerosol particles. The shape and elemental composition of size-segregated aerosol airborne-sampled by an airship aloft presumed air pollution sources helped to interpret the PMF solution.

  5. Communally Nesting Migratory Birds Create Ecological Hot-Spots in Tropical Australia

    PubMed Central

    Natusch, Daniel J. D.; Lyons, Jessica A.; Brown, Gregory; Shine, Richard

    2016-01-01

    Large numbers of metallic starlings (Aplonis metallica) migrate annually from New Guinea to the rainforests of tropical Australia, where they nest communally in single emergent trees (up to 1,000 birds). These aggregations create dense and species-rich faunal “hot-spots”, attracting a diverse assemblage of local consumers that utilise this seasonal resource. The starlings nested primarily in poison-dart trees (Antiaris toxicaria) near the rainforest-woodland boundary. Surveys underneath these colonies revealed that bird-derived nutrients massively increased densities of soil invertebrates and mammals (primarily wild pigs) beneath trees, year-round. Flying invertebrates, nocturnal birds, reptiles, and amphibians congregated beneath the trees when starlings were nesting (the wet-season). Diurnal birds (primarily cockatoos and bush turkeys) aggregated beneath the trees during the dry-season to utilise residual nutrients when the starlings were not nesting. The abundance of several taxa was considerably higher (to > 1000-fold) under colony trees than under nearby trees. The system strikingly resembles utilisation of bird nesting colonies by predators in other parts of the world but this spectacular system has never been described, emphasizing the continuing need for detailed natural-history studies in tropical Australia. PMID:27706197

  6. VP and VS structure of the Yellowstone hot spot from teleseismic tomography: Evidence for an upper mantle plume

    USGS Publications Warehouse

    Waite, Gregory P.; Smith, Robert B.; Allen, Richard M.

    2006-01-01

    The movement of the lithosphere over a stationary mantle magmatic source, often thought to be a mantle plume, explains key features of the 16 Ma Yellowstone–Snake River Plain volcanic system. However, the seismic signature of a Yellowstone plume has remained elusive because of the lack of adequate data. We employ new teleseismic P and S wave traveltime data to develop tomographic images of the Yellowstone hot spot upper mantle. The teleseismic data were recorded with two temporary seismograph arrays deployed in a 500 km by 600 km area centered on Yellowstone. Additional data from nearby regional seismic networks were incorporated into the data set. The VP and VS models reveal a strong low-velocity anomaly from ∼50 to 200 km directly beneath the Yellowstone caldera and eastern Snake River Plain, as has been imaged in previous studies. Peak anomalies are −2.3% for VP and −5.5% for VS. A weaker, anomaly with a velocity perturbation of up to −1.0% VP and −2.5% VS continues to at least 400 km depth. This anomaly dips 30° from vertical, west-northwest to a location beneath the northern Rocky Mountains. We interpret the low-velocity body as a plume of upwelling hot, and possibly wet rock, from the mantle transition zone that promotes small-scale convection in the upper ∼200 km of the mantle and long-lived volcanism. A high-velocity anomaly, 1.2%VP and 1.9% VS, is located at ∼100 to 250 km depth southeast of Yellowstone and may represent a downwelling of colder, denser mantle material.

  7. Mutual Occultation Observations of Volcanic Hot Spots on Io in 2015

    NASA Astrophysics Data System (ADS)

    Howell, Robert R.; Spencer, John R.; Rathbun, Julie A.; Goguen, Jay D.

    2015-11-01

    During spring 2015 we observed a series of mutual occultations and eclipses of Io using the SpeX instrument on the NASA Infrared Telescope Facility (IRTF). Mutual event lightcurves were obtained on 4 Feb., 18 Feb., 15 Mar., and 22 Mar. in the Lp (3.8 micron) filter, with observations on 11 Feb. and on 8 and 10 Mar. lost to weather. Such lightcurves can potentially provide the highest spatial resolution observations of Io's volcanic hotspots possible from ground-based observations. The geometry of the recent events was particularly favorable for studies of the Loki Patera region, but unfortunately Loki remained relatively faint during the 2015 series. An eruption of Pillan was observed on 18 Feb., and is discussed in more detail by de Pater et al. (2015) at this meeting. While the relative faintness of Loki during the recent series limits the value of the new observations for studying that source, recent improvements to the Galilean satellite ephemerides also allow us to significantly improve the analysis of previous Loki occultations from 1985, 1991, 1997, and 2003. In that earlier work it was necessary to allow adjustable offsets in the relative position of the satellites to accommodate ephemeris uncertainty. That in turn limited the accuracy with which hot regions within Loki Patera could be fixed, and limited the ability to test different models for Patera activity. Initial analysis of the most recent event series indicates that such arbitrary adjustments are no longer necessary. We will present the occultation lightcurves for the most recent series and the constraints on the location of Loki activity provided by those observations and from earlier occultation series.

  8. From science into practice: modelling hot spots for corporate flood risk and emergency management with high-resolution digital terrain data

    NASA Astrophysics Data System (ADS)

    Pfurtscheller, Clemens; Vetter, Michael; Werthmann, Markus

    2010-05-01

    In times of increasing scarcity of private or public resources and uncertain changes in natural environment caused by climate variations, prevention and risk management against floods and coherent processes in mountainous regions, like debris flows or log jams, should be faced as a main challenge for globalised enterprises whose production facilities are located in flood-prone areas. From an entrepreneurial perspective, vulnerability of production facilities which causes restrictions or a total termination of production processes has to be optimised by means of cost-benefit-principles. Modern production enterprises are subject to globalisation and accompanying aspects, like short order and delivery periods, interlinking production processes and just-in-time manufacturing, so a breakdown of production provokes substantial financial impacts, unemployment and a decline of gross regional product. The aim of the presented project is to identify weak and critical points of the corporate emergency planning ("hot spots") and to assess possible losses triggered by mountainous flood processes using high-resolution digital terrain models (DTM) from airborne LiDAR (ALS). We derive flood-hot spots and model critical locations where the risk of natural hazards is very high. To model those hot spots a flood simulation based on an ALS-DTM has to be calculated. Based on that flood simulation, the flood heights of the overflowed locations which are lower than a threshold are mapped as flood-hot-spots. Then the corporate critical infrastructure, e.g. production facilities or lifelines, which are affected by the flooding, can be figured out. After the identification of hot spots and possible damage potential, the implementation of the results into corporate risk and emergency management guarantees the transdisciplinary approach involving stakeholders, risk and safety management officers and corporate fire brigade. Thus, the interdisciplinary analysis, including remote sensing

  9. New Caledonia: A ' Hot Spot' for Valuable Chemodiversity: Part 2: Basal Angiosperms and Eudicot Rosids.

    PubMed

    Coulerie, Paul; Poullain, Cyril

    2016-01-01

    The flora of New Caledonia encompasses more than 3000 plant species and almost 80% are endemic. New Caledonia is considered as a 'hot spot' for biodiversity. With the current global loss of biodiversity and the fact that several drugs and pesticides become obsolete, there is an urgent need to increase sampling and research on new natural products. In this context, we review the chemical knowledge available on New Caledonian native flora from economical perspectives. We expect that a better knowledge of the economic potential of plant chemistry will encourage the plantation of native plants for the development of a sustainable economy which will participate in the conservation of biodiversity. In the second part of this review, we focus on the results exposed in 60 scientific articles and describe the identification of 225 original compounds from basal angiosperms and eudicot rosids. We discuss the economic potential of plants and molecules from medicinal and industrial perspectives. This review also highlights several plants and groups, such as Amborella sp., Piperaceae, or Phyllanthaceae, that are unexplored in New Caledonia despite their high chemical interest. Those plants are considered to have priority in future chemical investigations.

  10. River methane hot-spots: Continuous methane ebullition measurements over an annual cycle linked to river sediment production

    NASA Astrophysics Data System (ADS)

    Wilkinson, Jeremy; Maeck, Andreas; Ashboul, Zeyad; Lorke, Andreas

    2015-04-01

    Hot spot methane ebullition from impounded river reaches matches high rates observed around the globe. Ebullition dominates total methane flux in the Saar River (Germany) and is largely determined by sediment deposition rate. Using automated bubble traps developed in-house, and deployed over a year at four sites, we collected high resolution data showing that hydrodynamic disturbances from shipping, lock operations and hydrograph events trigger ebullition episodes. Reverse smoothing was used to integrate the observed ebullition back in time, and helped in visualizing the data, and provides a time-series closer to methane accumulation in the sediments, whereas ebullition shows the triggering and release of the accumulated gas. One major hydrological disturbance of shallow-water sediment released around 13% of the total annual ebullition at that site, and ebullition generally followed the seasonal sediment temperature variations. The same event damped ebullition from deeper water sites. Total annual ebullition values ranged from 200 to 500 gCH4 m-2 yr-1. Ebullition from shallow water sediments in winter ceased for extended periods, but continued un-broken from deeper sites. With on-going measurements we believe these findings will help to improve estimates and the modelling of methane emissions from impounded river systems.

  11. Magma production rate along the Ninetyeast Ridge and its relationship to Indian plate motion and Kerguelen hot spot activity

    NASA Astrophysics Data System (ADS)

    Sreejith, K. M.; Krishna, K. S.

    2015-02-01

    The Ninetyeast Ridge, a linear trace of the Kerguelen hot spot in the Indian Ocean, was emplaced on a rapidly drifting Indian plate. Magma production rates along the ridge track are computed using gravity-derived excess crustal thickness data. The production rates change between 2 and 15 m3/s over timescales of 3-16 Myr. Major variations in magma production rates are primarily associated with significant changes in the Indian plate velocity with low-production phases linked to high plate velocity periods. The lowest magma production rate (2 m3/s) at 62 Ma is associated with the rapid northward drift of Indian plate under the influence of the Reunion mantle plume. The contemporaneous slowing of the African plate coincides with increase in magma production rate along the Walvis Ridge in the Atlantic Ocean. The present study suggests that variations in the Indian plate motion and frequent ridge jumps have a major role in controlling the magma production, particularly on long-period cycles (~16 Myr). Short-period variations (~5 Myr) in magma productions may be associated with intrinsic changes in the plume, possibly due to the presence of solitary waves in the plume conduit.

  12. The HIV-1 repeated sequence R as a robust hot-spot for copy-choice recombination

    PubMed Central

    Moumen, Abdeladim; Polomack, Lucette; Roques, Bernard; Buc, Henri; Negroni, Matteo

    2001-01-01

    Template switching during reverse transcription is crucial for retroviral replication. While strand transfer on the terminal repeated sequence R is essential to achieve reverse transcription, template switching from internal regions of the genome (copy choice) leads to genetic recombination. We have developed an experimental system to study copy-choice recombination in vitro along the HIV-1 genome. We identify here several genomic regions, including the R sequence, where copy choice occurred at high rates. The frequency of copy choice occurring in a given region of template was strongly influenced by the surrounding sequences, an observation that suggests a pivotal role of the folding of template RNA in the process. The sequence R, instead, constituted an exception to this rule since it was a strong hot-spot for copy choice in the different sequence contexts tested. We suggest therefore that the structure of this region has been optimised during viral evolution to ensure efficient template switching independently from the sequences that might surround it. PMID:11557813

  13. High Frequency of Alkaptonuria in Slovakia: Evidence for the Appearance of Multiple Mutations in HGO Involving Different Mutational Hot Spots

    PubMed Central

    Zatková, Andrea; de Bernabé, Daniel Beltrán Valero; Poláková, Helena; Zvarík, Marek; Feráková, Eva; Bošák, Vladimir; Ferák, Vladimír; Kádasi, L'udovít; de Córdoba , Santiago Rodríguez

    2000-01-01

    Alkaptonuria (AKU) is an autosomal recessive disorder caused by the deficiency of homogentisate 1,2 dioxygenase (HGO) activity. AKU shows a very low prevalence (1:100,000–250,000) in most ethnic groups. One notable exception is in Slovakia, where the incidence of AKU rises to 1:19,000. This high incidence is difficult to explain by a classical founder effect, because as many as 10 different AKU mutations have been identified in this relatively small country. We have determined the allelic associations of 11 HGO intragenic polymorphisms for 44 AKU chromosomes from 20 Slovak pedigrees. These data were compared to the HGO haplotype data available in our laboratory for >80 AKU chromosomes from different European and non-European countries. The results show that common European AKU chromosomes have had only a marginal contribution to the Slovak AKU gene pool. Six of the ten Slovak AKU mutations, including the prevalent G152fs, G161R, G270R, and P370fs mutations, most likely originated in Slovakia. Data available for 17 Slovak AKU pedigrees indicate that most of the AKU chromosomes have their origins in a single very small region in the Carpathian mountains, in the northwestern part of the country. Since all six Slovak AKU mutations are associated with HGO mutational hot spots, we suggest that an increased mutation rate at the HGO gene is responsible for the clustering of AKU mutations in such a small geographical region. PMID:11017803

  14. Murine leukemia virus vector integration favors promoter regions and regional hot spots in a human T-cell line

    SciTech Connect

    Tsukahara, Tomonori; Agawa, Hideyuki; Matsumoto, Sayori; Matsuda, Mizuho; Ueno, Shuichi; Yamashita, Yuki; Yamada, Koichiro; Tanaka, Nobuyuki; Kojima, Katsuhiko; Takeshita, Toshikazu . E-mail: takesit@sch.md.shinshu-u.ac.jp

    2006-07-07

    Genomic analysis of integration will be important in evaluating the safety of human gene therapy with retroviral vectors. Here, we investigated MLV vector integration sites in human T-cells, since they are amenable to gene transfer studies, and have been used therapeutically in clinical trials. We mapped 340 MLV vector integration sites in the infected human T-cell clones we established. The data showed that MLV preferred integration near the transcription start sites ({+-}5 kb), near CpG islands ({+-}1 kb), and within the first intron of RefSeq genes. We also identified MLV integration hot spots that contained three or more integrations within a 100 kb region. RT-PCR revealed that mRNA-levels of T-cell clones that contained MLV integrations near transcription start sites or introns were dysregulated compared to the uninfected cells. These studies help define the profile of MLV integration in T-cells and the risks associated with MLV-based gene therapy.

  15. Current dependence of the hot-spot response spectrum of superconducting single-photon detectors with different layouts

    NASA Astrophysics Data System (ADS)

    Charaev, I.; Semenov, A.; Doerner, S.; Gomard, G.; Ilin, K.; Siegel, M.

    2017-02-01

    We show that avoiding bends in a current-carrying superconducting nanowire enhances the probability for low energy photons to be detected and that this enhancement is entirely due to the increase in the experimentally achievable critical current. We studied nanowires shaped as either meander or spiral. The spirals had different layouts, a double-spiral layout with an S-turn in the middle and a single-spiral layout without such a turn. Nanowires were prepared from films of niobium nitride with a thickness of 5 nm. For specimens with each layout we measured the spectra of the single-photon response in the wavelength range from 400 nm to 1600 nm and defined the cut-off wavelength (λ c) beyond which the response rolls off. The largest and the smallest λ c were found for the single-spiral layout and for the meander, respectively. For all three layouts the relationship between λ c and the relative bias current falls onto a universal curve which has been predicted earlier in the framework of the modified hot-spot model. For the single-spiral layout, the efficiency of photon detection at wavelengths smaller than λ c reaches the expected absorbance of the spiral structure and the timing jitter per unit length of the nanowire has the smallest value.

  16. Changes in the location of biodiversity-ecosystem function hot spots across the seafloor landscape with increasing sediment nutrient loading.

    PubMed

    Thrush, Simon F; Hewitt, Judi E; Kraan, Casper; Lohrer, A M; Pilditch, Conrad A; Douglas, Emily

    2017-04-12

    Declining biodiversity and loss of ecosystem function threatens the ability of habitats to contribute ecosystem services. However, the form of the relationship between biodiversity and ecosystem function (BEF) and how relationships change with environmental change is poorly understood. This limits our ability to predict the consequences of biodiversity loss on ecosystem function, particularly in real-world marine ecosystems that are species rich, and where multiple ecosystem functions are represented by multiple indicators. We investigated spatial variation in BEF relationships across a 300 000 m(2) intertidal sandflat by nesting experimental manipulations of sediment pore water nitrogen concentration into sites with contrasting macrobenthic community composition. Our results highlight the significance of many different elements of biodiversity associated with environmental characteristics, community structure, functional diversity, ecological traits or particular species (ecosystem engineers) to important functions of coastal marine sediments (benthic oxygen consumption, ammonium pore water concentrations and flux across the sediment-water interface). Using the BEF relationships developed from our experiment, we demonstrate patchiness across a landscape in functional performance and the potential for changes in the location of functional hot and cold spots with increasing nutrient loading that have important implications for mapping and predicating change in functionality and the concomitant delivery of ecosystem services.

  17. Estimating sediment accumulation rates in Manila Bay, a marine pollution hot spot in the Seas of East Asia.

    PubMed

    Sta Maria, E J; Siringan, F P; Bulos, A dM; Sombrito, E Z

    2009-01-01

    The GEF/UNDP/IMO/PEMSEA project identifies Manila Bay as among the marine pollution hot spots in the Seas of East Asia. (210)Pb dating of its sediment can provide a historical perspective of its pollution loading. However, the validity of (210)Pb dating in a complex dynamic coastal system of Manila Bay may come into question. Land-based sediment input can be high and physical and biological processes can possibly disturb the sediment layers. In this report, the (210)Pb profiles of sediment cores from different parts of the bay are presented. The linear sedimentation rates are shown to be higher in the recent past and are also variable across the bay. The largest change in sedimentation rate, coincided with the occurrence of a volcanic eruption in 1991 and is shown by applying a variant of the CIC model in sedimentation rate calculations. The data suggest that (210)Pb dating can be useful in estimating relative magnitudes of sedimentation rates, even in a complex dynamic coastal system like Manila Bay.

  18. Keweenaw hot spot: Geophysical evidence for a 1. 1 Ga mantle plume beneath the Midcontinent Rift System

    SciTech Connect

    Hutchinson, D.R. ); White, R.S. ); Cannon, W.F.; Schulz, K.J. )

    1990-07-10

    The Proterozoic Midcontinent Rift System of North America is remarkably similar to Phanerozoic rifted continental margins and flood basalt provinces. Like the younger analogues, the volcanism within this older rift can be explained by decompression melting and rapid extrusion of igneous material during lithospheric extension above a broad, asthenospheric, thermal anomaly which the authors call the Keweenaw hot spot. Great Lakes International Multidisciplinary Program on Crustal evolution seismic reflection profiles constrain end-member models of melt thickness and stretching factors, which yield an inferred mantle potential temperature of 1,500-1,570C during rifting. Combined gravity modeling and subsidence calculations are consistent with stretching factors that reached 3 or 4 before rifting ceased, and much of the lower crust beneath the rift consists of relatively high density intruded or underplated synrift igneous material. The isotopic signature of Keweenawan volcanic rocks, presented in a companion paper by Nicholson and Shirey (this issue), is consistent with the model of passive rifting above an asthenospheric mantle plume.

  19. High frequency of alkaptonuria in Slovakia: evidence for the appearance of multiple mutations in HGO involving different mutational hot spots.

    PubMed

    Zatková, A; de Bernabé, D B; Poláková, H; Zvarík, M; Feráková, E; Bosák, V; Ferák, V; Kádasi, L; de Córdoba, S R

    2000-11-01

    Alkaptonuria (AKU) is an autosomal recessive disorder caused by the deficiency of homogentisate 1,2 dioxygenase (HGO) activity. AKU shows a very low prevalence (1:100,000-250,000) in most ethnic groups. One notable exception is in Slovakia, where the incidence of AKU rises to 1:19,000. This high incidence is difficult to explain by a classical founder effect, because as many as 10 different AKU mutations have been identified in this relatively small country. We have determined the allelic associations of 11 HGO intragenic polymorphisms for 44 AKU chromosomes from 20 Slovak pedigrees. These data were compared to the HGO haplotype data available in our laboratory for >80 AKU chromosomes from different European and non-European countries. The results show that common European AKU chromosomes have had only a marginal contribution to the Slovak AKU gene pool. Six of the ten Slovak AKU mutations, including the prevalent G152fs, G161R, G270R, and P370fs mutations, most likely originated in Slovakia. Data available for 17 Slovak AKU pedigrees indicate that most of the AKU chromosomes have their origins in a single very small region in the Carpathian mountains, in the northwestern part of the country. Since all six Slovak AKU mutations are associated with HGO mutational hot spots, we suggest that an increased mutation rate at the HGO gene is responsible for the clustering of AKU mutations in such a small geographical region.

  20. Study and Applications of Dynamic Resistance Profiles During Resistance Spot Welding of Coated Hot-Stamping Steels

    NASA Astrophysics Data System (ADS)

    Ighodaro, Osayande Lord-Rufus; Biro, Elliot; Zhou, Y. Norman

    2017-02-01

    This work compares the role of press hardened steel coating type (Al-Si and GA) on resistance spot welding by analyzing the dynamic resistance curves measured during the weld cycles of the respective materials. It was seen that the dynamic resistance profiles for GA- and Al-Si-coated steels are similar. But the GA specimens exhibited higher resistance than Al-Si-coated specimens in the as-received condition, while the Al-Si-coated specimens exhibited higher resistance after hot stamping. From the early stages of the dynamic resistance profiles, data were obtained and applied for computing the values of components of resistances associated with the different coatings since each coating exhibits characteristic value at the early stages. The results revealed that at the start of the welding cycle, the resistance of the electrode/sheet interface was significantly higher than that of the faying surface or the bulk resistance regardless of whether the steel was Al-Si- or GA-coated. The possible uses of these resistance values in studying welding current requirement and electrode tip life were discussed.

  1. Stabilization of large drainage basins over geological time scales: Cenozoic West Africa, hot spot swell growth, and the Niger River

    NASA Astrophysics Data System (ADS)

    Chardon, Dominique; Grimaud, Jean-Louis; Rouby, Delphine; Beauvais, Anicet; Christophoul, Frédéric

    2016-03-01

    Reconstructing the evolving geometry of large river catchments over geological time scales is crucial to constraining yields to sedimentary basins. In the case of Africa, it should further help deciphering the response of large cratonic sediment routing systems to Cenozoic growth of the basin-and-swell topography of the continent. Mapping of dated and regionally correlated lateritic paleolandscape remnants complemented by onshore sedimentological archives allows the reconstruction of two physiographic configurations of West Africa in the Paleogene. Those reconstructions show that the geometry of the drainage is stabilized by the late early Oligocene (29 Ma) and probably by the end of the Eocene (34 Ma), allowing to effectively link the inland morphoclimatic record to offshore sedimentation since that time, particularly in the case of the Niger catchment—delta system. Mid-Eocene paleogeography reveals the antiquity of the Senegambia catchment back to at least 45 Ma and suggests that a marginal upwarp forming a continental divide preexisted early Oligocene connection of the Niger and Volta catchments to the Equatorial Atlantic Ocean. Such a drainage rearrangement was primarily enhanced by the topographic growth of the Hoggar hot spot swell and caused a stratigraphic turnover along the Equatorial margin of West Africa.

  2. Unexpected climatological behavior of MLT gravity wave momentum flux in the lee of the Southern Andes hot spot

    NASA Astrophysics Data System (ADS)

    Wit, R. J.; Janches, D.; Fritts, D. C.; Stockwell, R. G.; Coy, L.

    2017-01-01

    The Southern Argentina Agile MEteor Radar (SAAMER), located at Tierra del Fuego (53.7°S, 67.7°W), has been providing near-continuous high-resolution measurements of winds and high-frequency gravity wave (GW) momentum fluxes of the mesopause region since May 2008. As SAAMER is located in the lee of the largest seasonal GW hot spot on Earth, this is a key location to study GWs and their interaction with large-scale motions. GW momentum flux climatologies are shown for the first time for this location and discussed in light of these unique dynamics. Particularly, the large eastward GW momentum fluxes during local winter are surprising, as these observations cannot be explained by the direct upward propagation of expected large-amplitude mountain waves (MWs) through the eastward stratospheric jet. Instead, these results are interpreted as secondary GWs propagating away from stratospheric sources over the Andes accompanying MW breaking over the Southern Andes.

  3. Saturation scanning of ubiquitin variants reveals a common hot spot for binding to USP2 and USP21

    PubMed Central

    Leung, Isabel; Dekel, Ayelet; Shifman, Julia M.; Sidhu, Sachdev S.

    2016-01-01

    A detailed understanding of the molecular mechanisms whereby ubiquitin (Ub) recognizes enzymes in the Ub proteasome system is crucial for understanding the biological function of Ub. Many structures of Ub complexes have been solved and, in most cases, reveal a large structural epitope on a common face of the Ub molecule. However, owing to the generally weak nature of these interactions, it has been difficult to map in detail the functional contributions of individual Ub side chains to affinity and specificity. Here we took advantage of Ub variants (Ubvs) that bind tightly to particular Ub-specific proteases (USPs) and used phage display and saturation scanning mutagenesis to comprehensively map functional epitopes within the structural epitopes. We found that Ubvs that bind to USP2 or USP21 contain a remarkably similar core functional epitope, or “hot spot,” consisting mainly of positions that are conserved as the wild type sequence, but also some positions that prefer mutant sequences. The Ubv core functional epitope contacts residues that are conserved in the human USP family, and thus it is likely important for the interactions of Ub across many family members. PMID:27436899

  4. Depth to Curie temperature or magnetic sources bottom in the volcanic zone of La Réunion hot spot

    NASA Astrophysics Data System (ADS)

    Gailler, Lydie-Sarah; Lénat, Jean-François; Blakely, Richard J.

    2015-04-01

    We present an innovative study to generalize Curie Point Depth (CPD) determinations at the scale of oceanic volcanic islands, an approach heretofore largely focused on continental areas. In order to assert the validity of this technique in oceanic environments, we first test the Tanaka et al. (1999) approach on sets of oceanic ridges anomalies. Assuming that magnetic anomalies are concentrated within the oceanic crust and maybe part of the underlying upper mantle, the Curie depth should become deeper as the oceanic lithosphere becomes older (i.e. thicker). The calculated depths to magnetic bottom are in agreement with this general pattern. Using the growing assumption of a magnetized upper mantle, we consider that the method can be confidently used in the case of La Réunion Island and its surrounding oceanic lithosphere. We use the magnetic anomaly map computed by Gailler and Lénat (2010), completed and extended with the global Earth Magnetic Anomaly Grid (EMAG2) (Maus et al., 2007). The calculated magnetic sources bottom lies at depths between 10 and 29 km and exhibits a complex topography, presumably caused by the combination of various magmatic and tectonic crustal structures. To the first order, the magnetic bottom surface shallows beneath La Réunion and Mauritius Islands, suggesting a thermal effect of the hot spot, and deepens away from La Réunion edifice. At the scale of the Mascarene Basin, several discontinuities in CPD are well correlated with main fracture zones.

  5. Coal-Tar-Sealcoated Parking Lots: "Hot spots" of PAHs and N-heterocycles to Urban Streams and Lakes Result in "Hot Moments" of Toxicity

    NASA Astrophysics Data System (ADS)

    Mahler, B. J.; Van Metre, P. C.; Ingersoll, C.; Kunz, J. L.

    2014-12-01

    Coal-tar (CT) sealcoat, a potent source of polycyclic aromatic hydrocarbons (PAHs) and N-heterocycles, is applied to asphalt pavement of parking lots and driveways in many parts of the U.S. and Canada every 1 to 5 years. We measured the chemistry and toxicity of unfiltered runoff resulting from rain events simulated from 5 hours to 111 days after application of CT or asphalt (AS) sealcoat. PAHs and N-heterocycles were measured by GC/EIMS. Toxicity tests were done with Ceriodaphnia dubia and Pimephales promelas exposed 48 hours to undiluted and diluted (1 part runoff 9 parts control water) runoff under ambient lighting. Organisms were then transferred to fresh control water and subjected to a 4-hour pulse of ultraviolet radiation (UVR). Concentrations of 2- and 3-ringed PAHs and N-heterocycles in CT runoff, initially high (sum of 6 PAHs, 220 μg/L; sum of 7 N-heterocycles, 904 μg/L), decreased rapidly, whereas concentrations of 4-, 5- and 6-ringed PAHs more than doubled by 7 days after application (sum of 9 PAHs, 378 μg/L) and remained elevated 111 days after application (sum of 9 PAHs, 283 μg/L). Concentrations of PAHs and N-heterocycles in AS sealcoated runoff followed a similar pattern, but were ~10 times lower than those in CT runoff; concentrations in a sample of runoff from unsealed asphalt pavement were near or less than the detection limit. Organisms exposed to samples of undiluted CT-runoff collected during the 36 days following CT sealcoat application (no UVR exposure) experienced 100% mortality. Mortality (as much as 100%) of organisms exposed to the 10% dilution of CT runoff or to undiluted AS runoff occurred only with UVR; mortality of organisms exposed to the 10% solution of AS runoff and UVR was minimal. Results demonstrate that freshly CT-sealed parking lots and driveways are "hot spots" of PAH and N-heterocycle contamination and that prolonged "hot moments" of toxicity follow CT sealcoat application.

  6. Treating and drinking well water in the presence of health risks from arsenic contamination: results from a U.S. hot spot.

    PubMed

    Shaw, W Douglass; Walker, Mark; Benson, Marnee

    2005-12-01

    The Safe Drinking Water Act of 1974 regulates water quality in public drinking water supply systems but does not pertain to private domestic wells, often found in rural areas throughout the country. The recent decision to tighten the drinking water standard for arsenic from 50 parts per billion (ppb) to 10 ppb may therefore affect some households in rural communities, but may not directly reduce health risks for those on private wells. The article reports results from a survey conducted in a U.S. arsenic hot spot, the rural area of Churchill County, Nevada. This area has elevated levels of arsenic in groundwater. We find that a significant proportion of households on private wells are consuming drinking water with arsenic levels that pose a health risk. The decision to treat tap water for those on private wells in this area is modeled, and the predicted probability of treatment is used to help explain drinking water consumption. This probability represents behaviors relating to the household's perception of risk.

  7. The Satah Mountain and Baldface Mountain volcanic fields: Pleistocene hot spot volcanism in the Anahim Volcanic Belt, west-central British Columbia, Canada

    NASA Astrophysics Data System (ADS)

    Kuehn, Christian; Guest, Bernard; Russell, James K.; Benowitz, Jeff A.

    2015-03-01

    The Satah Mountain and Baldface Mountain volcanic fields (SMVF, BMVF) comprise more than three dozen small volcanic centers and erosional remnants thereof. These fields are located in the Chilcotin Highland of west-central British Columbia, Canada, and are spatially associated with the Anahim Volcanic Belt (AVB), a linear feature of alkaline to peralkaline plutonic and volcanic centers of Miocene to Holocene ages. The AVB has been postulated to be the track of a hot spot passing beneath the westward moving Cordilleran lithosphere. We test the AVB hot spot model by applying whole-rock 40Ar/39Ar geochronology ( n = 24) and geochemistry. Whole-rock chemical compositions of volcanic rock samples ( n = 59) from these two fields suggest a strong geochemical affinity with the nearby Itcha Range shield volcano; however, SMVF and BMVF centers are mostly small in volume (<1 km3) and differ in composition from one another, even where they are in close spatial proximity. Trace element and REE patterns of mafic AVB lavas are similar to ocean island basalts (OIB), suggesting a mantle source for these lavas. The age ranges for the SMVF ( n = 11; ~2.21 to ~1.43 Ma) and BMVF ( n = 7; ~3.91 to ~0.91 Ma) are largely coeval with the Itcha Range. The distribution of volcanoes in these two volcanic fields is potentially consistent with the postulated AVB hot spot track. Eruption rates in the SMVF were high enough to build an elongated ridge that deviates from the E-W trend of the AVB by almost 90°. This deviation might reflect the mechanisms and processes facilitating magma generation and ascent through the lithosphere in this tectonically complex region and may also indicate interaction of the potential hot spot with (pre)existing fracture systems in vicinity of the Itcha Range.

  8. High-resolution surveys along the hot spot-affected Gálapagos Spreading Center: 3. Black smoker discoveries and the implications for geological controls on hydrothermal activity

    NASA Astrophysics Data System (ADS)

    Haymon, Rachel M.; White, Scott M.; Baker, Edward T.; Anderson, Peter G.; MacDonald, Ken C.; Resing, Joseph A.

    2008-12-01

    To explore effects of hot spots on mid-ocean ridge hydrothermal systems, we conducted nested sonar, hydrothermal plume, and near-bottom photographic surveys along the portion of the Galápagos Spreading Center (GSC) influenced by the Galápagos hot spot, from longitude 95°-89.5°W. We report the first active high-temperature black smokers to be found on the GSC, at longitudes 94°4.5'W and 91°56.2'-54.3'W; describe two areas of recently inactive smokers, at longitudes 91°23.4'-23.7'W and 91°13.8'W; and document an older inactive site, at longitude 90°33.4'W. All imaged vents issue either from dike-induced fissures along linear axial volcanic ridges and collapses or from a caldera. Magmatic control of hydrothermal systems also is revealed by spatial clustering of plumes within the topographically elevated middles of volcanic ridge segments with inferred centralized melt supply. In searched areas, smokers are more typical than diffuse flow vents, but total GSC plume incidence is half of that expected from the spreading rate. Why? Dike-fed fissures provide permeable pathways for efficient hydrothermal extraction of magmatic heat, but cones without calderas do not. Among many point-source cones surveyed, only the two with calderas had detectable plumes. Possibly, dominance of point-source over linear-source melt delivery on the GSC decreases plume incidence. Also, similar maturities of observed vents and their host lava flows indicate that hydrothermally active volcanic segments along the western GSC are contemporaneously in a waning phase of volcanic-hydrothermal activity. Perhaps ridge/hot spot interaction produces melt pulses that drive near-synchronous volcanic-hydrothermal activity on the volcanic segments spanning the hot spot. During active periods, hydrothermally active dike-fed fissures and calderas may be more abundant than we currently observe.

  9. Three-dimensional (3D) plasmonic hot spots for label-free sensing and effective photothermal killing of multiple drug resistant superbugs.

    PubMed

    Jones, Stacy; Sinha, Sudarson Sekhar; Pramanik, Avijit; Ray, Paresh Chandra

    2016-11-03

    Drug resistant superbug infection is one of the foremost threats to human health. Plasmonic nanoparticles can be used for ultrasensitive bio-imaging and photothermal killing by amplification of electromagnetic fields at nanoscale "hot spots". One of the main challenges to plasmonic imaging and photothermal killing is design of a plasmonic substrate with a large number of "hot spots". Driven by this need, this article reports design of a three-dimensional (3D) plasmonic "hot spot"-based substrate using gold nanoparticle attached hybrid graphene oxide (GO), free from the traditional 2D limitations. Experimental results show that the 3D substrate has capability for highly sensitive label-free sensing and generates high photothermal heat. Reported data using p-aminothiophenol conjugated 3D substrate show that the surface enhanced Raman spectroscopy (SERS) enhancement factor for the 3D "hot spot"-based substrate is more than two orders of magnitude greater than that for the two-dimensional (2D) substrate and five orders of magnitude greater than that for the zero-dimensional (0D) p-aminothiophenol conjugated gold nanoparticle. 3D-Finite-Difference Time-Domain (3D-FDTD) simulation calculations indicate that the SERS enhancement factor can be greater than 10(4) because of the bent assembly structure in the 3D substrate. Results demonstrate that the 3D-substrate-based SERS can be used for fingerprint identification of several multi-drug resistant superbugs with detection limits of 5 colony forming units per mL. Experimental data show that 785 nm near infrared (NIR) light generates around two times more photothermal heat for the 3D substrate with respect to the 2D substrate, and allows rapid and effective killing of 100% of the multi-drug resistant superbugs within 5 minutes.

  10. Plasmon Mapping in Metallic Nanostructures and its Application to Single Molecule Surface Enhanced Raman Scattering: Imaging Electromagnetic Hot-Spots and Analyte Location

    SciTech Connect

    Camden, Jon P

    2013-07-16

    A major component of this proposal is to elucidate the connection between optical and electron excitation of plasmon modes in metallic nanostructures. These accomplishments are reported: developed a routine protocol for obtaining spatially resolved, low energy EELS spectra, and resonance Rayleigh scattering spectra from the same nanostructures.; correlated optical scattering spectra and plasmon maps obtained using STEM/EELS.; and imaged electromagnetic hot spots responsible for single-molecule surface-enhanced Raman scattering (SMSERS).

  11. A cancer-predisposing "hot spot" mutation of the fumarase gene creates a dominant negative protein.

    PubMed

    Lorenzato, Annalisa; Olivero, Martina; Perro, Mario; Brière, Jean Jacques; Rustin, Pierre; Di Renzo, Maria Flavia

    2008-02-15

    The Fumarase (Fumarate Hydratase, FH) is a tumor suppressor gene whose germline heterozygous mutations predispose to hereditary leiomyomatosis and renal cell cancer (HLRCC). The FH gene encodes an enzyme of the Krebs cycle, functioning as a homotetramer and catalyzing the hydration of fumarate to malate. Among the numerous FH mutations reported so far, the R190H missense mutation is the most frequent in HLRCC patients. Here we show the functional analyses of the R190H, in comparison to the better characterized E319Q mutation. We first expressed wild-type and mutated proteins in FH deficient human skin fibroblasts, using lentiviral vectors. The wild-type transgene was able to restore the FH enzymatic activity in cells, while the R190H- and E319Q-FH were not. More interestingly, when the same transgenes were expressed in normal, FH-proficient cells, only the R190H-FH reduced the endogenous FH enzymatic activity. By enforcing the expression of equal amount of wild-type and R190H-FH in the same cell, we showed that the mutated FH protein directly inhibited enzymatic activity by nearly abrogating the FH homotetramer formation. These data demonstrate the dominant negative effect of the R190H missense mutation in the FH gene and suggest that the FH tumor-suppressing activity might be impaired in cells carrying a heterozygous mutation.

  12. Hot Spot and THz Wave Generation in Bi2Sr2CaCu2O8 Intrinsic Josephson Junction Stacks

    NASA Astrophysics Data System (ADS)

    Kleiner, Reinhold

    2013-03-01

    Stacks of intrinsic Josephson junctions made of the high temperature superconductor Bi2Sr2CaCu2O8 have been shown to emit coherent radiation at THz frequencies. Emission is observed both in a low bias regime and a high bias regime. While at low bias the temperature of the stack is close to the bath temperature, at high bias a hot spot and a standing wave, formed in the ``cold'' part of the stack, coexist. THz radiation is very stable in this regime, exhibiting a linewidth which is much smaller than expected from a purely cavity-induced synchronization mechanism. We investigate the interaction of hot spots and THz waves using a combination of transport measurement, direct electromagnetic wave detection and low temperature scanning laser microscopy (LTSLM). In this talk recent developments will be presented, with a focus on the mechanism of hot spot formation. In collaboration with B. Gross, S. Guénon, M. Y. Li, J. Yuan, N. Kinev, J. Li, A. Ishii, K. Hirata, T. Hatano, R. G. Mints, D. Koelle, V. P. Koshelets, H. B. Wang and P. H. Wu.

  13. Nanoparticle-nanoparticle vs. nanoparticle-substrate hot spot contributions to the SERS signal: studying Raman labelled monomers, dimers and trimers.

    PubMed

    Sergiienko, Sergii; Moor, Kamila; Gudun, Kristina; Yelemessova, Zarina; Bukasov, Rostislav

    2017-02-08

    We used a combination of Raman microscopy, AFM and TEM to quantify the influence of dimerization on the surface enhanced Raman spectroscopy (SERS) signal for gold and silver nanoparticles (NPs) modified with Raman reporters and situated on gold, silver, and aluminum films and a silicon wafer. The overall increases in the mean SERS enhancement factor (EF) upon dimerization (up by 43% on average) and trimerisation (up by 96% on average) of AuNPs and AgNPs on the studied metal films are within a factor of two, which is moderate when compared to most theoretical models. However, the maximum ratio of EFs for some dimers to the mean EF of monomers can be as high as 5.5 for AgNPs on a gold substrate. In contrast, for dimerization and trimerization of gold and silver NPs on silicon, the mean EF increases by 1-2 orders of magnitude relative to the mean EF of single NPs. Therefore, hot spots in the interparticle gap between gold nanoparticles rather than hot spots between Au nanoparticles and the substrate dominate SERS enhancement for dimers and trimers on a silicon substrate. However, Raman labeled noble metal nanoparticles on plasmonic metal films generate on average SERS enhancement of the same order of magnitude for both types of hot spot zones (e.g. NP/NP and NP/metal film).

  14. Mobile Launch Platform Vehicle Assembly Building Area (SWMU 056) Hot Spot 3 Bioremediation Interim Measures Work Plan, Kennedy Space Center, Florida

    NASA Technical Reports Server (NTRS)

    Whitney L. Morrison; Daprato, Rebecca C.

    2016-01-01

    This Interim Measures Work Plan (IMWP) presents an approach and design for the remediation of chlorinated volatile organic compound (CVOC) groundwater impacts using bioremediation (biostimulation and bioaugmentation) in Hot Spot 3, which is defined by the area where CVOC (trichloroethene [TCE], cis-1,2-dichloroethene [cDCE], and vinyl chloride [VC]) concentrations are greater than 10 times their respective Florida Department of Environmental Protection (FDEP) Natural Attenuation Default Concentration (NADC) [10xNADC] near the western Mobile Launch Platform (MLP) structure. The IM treatment area is the Hot Spot 3 area, which is approximately 0.07 acres and extends from approximately 6 to 22 and 41 to 55 feet below land surface (ft BLS). Within Hot Spot 3, a source zone (SZ; area with TCE concentrations greater than 1% solubility [11,000 micrograms per liter (micrograms/L)]) was delineated and is approximately 0.02 acres and extends from approximately 6 to 16 and 41 to 50 ft BLS.

  15. An Antarctic hot spot for fungi at Shackleton's historic hut on Cape Royds.

    PubMed

    Blanchette, Robert A; Held, Benjamin W; Arenz, Brett E; Jurgens, Joel A; Baltes, Nicolas J; Duncan, Shona M; Farrell, Roberta L

    2010-07-01

    The historic expedition huts located in the Ross Sea Region of the Antarctic and the thousands of artifacts left behind by the early explorers represent important cultural heritage from the "Heroic Era" of Polar exploration. The hut at Cape Royds built by Ernest Shackleton and members of the 1907-1908 British Antarctic Expedition has survived the extreme Antarctic environment for over 100 years, but recent studies have shown many forms of deterioration are causing serious problems, and microbial degradation is evident in the historic wood. Conservation work to reduce moisture at the hut required removal of fodder, wood, and many different types of organic materials from the stables area on the north side of the structure allowing large numbers of samples to be obtained for these investigations. In addition, wood from historic food storage boxes exposed in a ravine adjacent to the hut were also sampled. Fungi were cultured on several different media, and pure cultures were obtained and identified by sequencing of the internal transcribed spacer region of rDNA. From the 69 cultures of filamentous fungi obtained, the most predominant genera were Cadophora (44%) followed by Thielavia (17%) and Geomyces (15%). Other fungi found included Cladosporium, Chaetomium, and isolates identified as being in Pezizomycotina, Onygenales, Nectriaceae, and others. No filamentous basidiomycetes were found. Phylogenetic analyses of the Cadophora species showed great species diversity present revealing Cadophora malorum, Cadophora luteo-olivacea, Cadophora fastigiata, as well as Cadophora sp. 4E71-1, a C. malorum-like species, and Cadophora sp. 7R16-1, a C. fastigiata-like species. Scanning electron microscopy showed extensive decay was present in the wood samples with type 1 and type 2 forms of soft rot evident in pine and birch wood, respectively. Fungi causing decay in the historic wooden structures and artifacts are of great concern, and this investigation provides insight into the

  16. Present Day Hot Spot Melting Inferred from Geodynamics and Thermodynamics Modeling and the Thermal History of the Mantle

    NASA Astrophysics Data System (ADS)

    Tirone, M.; Ganguly, J.

    2011-12-01

    Hot spot melting is the end-product of a complex sequence of processes that most likely starts at the CMB boundary. To provide a complete description and a better constrained understanding of the melting process from the petrological and geophysical point of view, two requirements appear to be essential. 1) accurate knowledge of the physico-chemical and thermodynamic properties of the mantle, and characterization of the thermal and geodynamic conditions for the generation and evolution of a thermal plume. 2) development of a geodynamic numerical procedure that incorporates the properties of the mantle and is capable of simulate the thermal evolution of a plume and the petrological evolution of the melting process. The thermodynamic approach is best suited to accomplish the latter objective. By following these requirements, the model allows us to compute several features that can be independently compared with petrological and geophysical observations which ultimately provide a validation for the whole procedure. The viscosity and the thermal conditions leading to the formation of a thermal plume are retrieved from a separate study of the thermal history of the mantle that is mainly constrained by the requirement for melting in the upper mantle in the past and recent time (session DI19, contribution entitled: A Viscosity Model for the Mantle Based on Diffusion in Minerals and Constrained by the Thermal History and Melting of the Mantle). The main topic of this contribution is the final stage of the plume evolution, that is the the thermal structure and melting in a hot spot setting, focusing in particular on the magmatism associated to the Hawaiian-Emperor seamount chain. The numerical study is a work in progress that reveals several key features. Perhaps the most important aspect that emerge from the modeling work is the formation of periodic instabilities and the thermal erosion of the base of the lithosphere which are mainly induced by the formation and transport

  17. Opening the research agenda for selection of hot spots for human biomonitoring research in Belgium: a participatory research project

    PubMed Central

    2010-01-01

    Background In order to select priority hotspots for environment and health research in Flanders (Belgium), an open procedure was organized. Environment and health hotspots are strong polluting point sources with possible health effects for residents living in the vicinity of the hot spot. The selection procedure was part of the work of the Flemish Centre of Expertise for Environment and Health, which investigates the relation between environmental pollution and human health. The project is funded and steered by the Flemish government. Methods The involvement of other actors than merely experts is inspired by the 'analytical-deliberative' approach of the National Research Council in the United States and the extended peer community approach. These approaches stress the importance of involving different expert- and social perspectives in order to increase the knowledge base on complex issues. In the procedure used in the project a combination of expert and stakeholder input was essential. The final decision was supported by a multi-criteria analysis of expert assessment and stakeholder advice. Results The endeavour was challenging from the start because of the complicated ambition of including a diversity of actors, potential hotspots, concerns and assessment criteria, but nevertheless the procedure proved its value in both structuring and informing the decision-making process. Moreover the process gained the support of most actors participating in the process, even though the final selection could not satisfy all preferences. Conclusions Opening the research agenda exemplifies the value of inter- and transdisciplinary cooperation as well as the need for a well-structured and negotiated procedure that combines relevant factors and actors with pragmatism. The value of such a process also needs to prove itself in practice after the procedure has been completed: the tension between an ambition of openness on the one hand and a more closed attitude amongst experts on the

  18. Dioxins and Nonortho PCBs in Breast Milk of Vietnamese Mothers Living in the Largest Hot Spot of Dioxin Contamination.

    PubMed

    Nghi, Tran Ngoc; Nishijo, Muneko; Manh, Ho Dung; Tai, Pham The; Van Luong, Hoang; Anh, Tran Hai; Thao, Pham Ngoc; Trung, Nguyen Viet; Waseda, Tomoo; Nakagawa, Hideaki; Kido, Teruhiko; Nishijo, Hisao

    2015-05-05

    Bien Hoa Air Base is the largest dioxin contamination hot spot in Vietnam. In 2012, we recruited 216 mothers who were living in 10 communities around Bien Hoa Air Base and had delivered newborns at a prefecture hospital, and we investigated recent exposure levels of dioxins and nonortho PCBs in their breast milk. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (2,3,7,8-tetraCDD) was present at 2.6 pg/g lipid in primiparae and 2.2 pg/g lipid in multiparae. Among multiparae and total subjects, significant high prevalence of 2,3,7,8-tetraCDD≥5 pg/g lipid and 2,3,7,8-tetraCDD contribution≥40% were observed in mothers living in the five communities closest to Bien Hoa Air Base. The TEQ for nonortho PCBs was 1.6 pg-TEQ/g lipid for primiparae, and this was even lower than that in the unsprayed area. The length of residency was a strong factor to increase dioxins, including 2,3,7,8-tetraCDD. Residency in the five communities with the highest exposure was a specific risk factor for increased 2,3,7,8-tetraCDD in breast milk. Food intake might contribute partly to the increased levels of dioxin congeners other than 2,3,7,8-tetraCDD in breast milk. These results suggest that Bien Hoa Air Base has led to elevated 2,3,7,8-tetraCDD levels in breast milk of mothers in nearby areas even in the recent years.

  19. Premutation huntingtin allele adopts a non-B conformation and contains a hot spot for DNA damage

    SciTech Connect

    Jarem, Daniel A.; Delaney, Sarah

    2011-12-09

    Highlights: Black-Right-Pointing-Pointer First structural and thermodynamic analysis of premutation allele of HD. Black-Right-Pointing-Pointer Premutation allele of HD adopts a stem-loop non-B conformation. Black-Right-Pointing-Pointer Healthy and premutation length stem-loops are hyper-susceptible to oxidative damage. Black-Right-Pointing-Pointer Stability of stem-loop structures increases linearly with repeat length. Black-Right-Pointing-Pointer Thermodynamic stability, not the ability to adopt non-B conformation, distinguishes DNA prone to expansion from stable DNA. -- Abstract: The expansion of a CAG trinucleotide repeat (TNR) sequence has been linked to several neurological disorders, for example, Huntington's disease (HD). In HD, healthy individuals have 5-35 CAG repeats. Those with 36-39 repeats have the premutation allele, which is known to be prone to expansion. In the disease state, greater than 40 repeats are present. Interestingly, the formation of non-B DNA conformations by the TNR sequence is proposed to contribute to the expansion. Here we provide the first structural and thermodynamic analysis of a premutation length TNR sequence. Using chemical probes of nucleobase accessibility, we found that similar to (CAG){sub 10}, the premutation length sequence (CAG){sub 36} forms a stem-loop hairpin and contains a hot spot for DNA damage. Additionally, calorimetric analysis of a series of (CAG){sub n} sequences, that includes repeat tracts in both the healthy and premutation ranges, reveal that thermodynamic stability increases linearly with the number of repeats. Based on these data, we propose that while non-B conformations can be formed by TNR tracts found in both the healthy and premutation allele, only sequences containing at least 36 repeats have sufficient thermodynamic stability to contribute to expansion.

  20. Local diversity hot spots in the Middle Miocene of the Central Paratethys: influence of environment and sampling

    NASA Astrophysics Data System (ADS)

    Nawrot, Rafal; Zuschin, Martin; Harzhauser, Mathias; Kroh, Andreas; Mandic, Oleg

    2015-04-01

    Species richness captured by historical fossil inventories is a complex function of true local diversity, degree of outcrop-scale heterogeneity in species composition and sampling intensity. Disentangling these factors is hindered by the fact that the 'systematists follow the fossils' (Raup, 1977) and thus non-uniform research effort may both drive apparent diversity patterns and follow the actual presence of highly fossiliferous strata. The molluscan fauna of Lapugiu de Sus (Hunedoara District, Romania) constitutes one of the most diverse Early Badenian (Langhian) assemblages of the Paratethys Sea, with almost one thousand species reported during 170 years of extensive studies. We evaluate whether this exceptional richness reflects the actual diversity hot spot or just a long history of fossil-collecting by comparing the fauna of Lapugiu with other Paratethyan molluscan lagerstätten of similar age. The literature-derived species lists for each section were contrasted with independent abundance data based on a standardized sampling protocol (42 samples, 24,000 specimens, and 530 species from six localities). Although individual samples from other localities can exhibit comparable diversity levels, richness estimates for samples from Lapugiu are all consistently high, reflecting increasing evenness in more offshore depositional settings. This translates to the highest diversity at the outcrop scale when all samples are pooled. In contrast to other localities, however, for which data from historical inventories corresponds well to our quantitative estimates of total richness, the number of species described from Lapugiu is much higher than expected. This excessive richness likely reflects the 'Bonanza Effect' (sensu Dunhill et al., 2012), where uniformly species-rich deposits were attracting intensive taxonomic studies. The strong positive feedback between palaeontological sampling effort and fossil diversity may thus greatly overestimate the true differences in

  1. Multi-Scale Multi-physics Methods Development for the Calculation of Hot-Spots in the NGNP

    SciTech Connect

    Downar, Thomas; Seker, Volkan

    2013-04-30

    Radioactive gaseous fission products are released out of the fuel element at a significantly higher rate when the fuel temperature exceeds 1600°C in high-temperature gas-cooled reactors (HTGRs). Therefore, it is of paramount importance to accurately predict the peak fuel temperature during all operational and design-basis accident conditions. The current methods used to predict the peak fuel temperature in HTGRs, such as the Next-Generation Nuclear Plant (NGNP), estimate the average fuel temperature in a computational mesh modeling hundreds of fuel pebbles or a fuel assembly in a pebble-bed reactor (PBR) or prismatic block type reactor (PMR), respectively. Experiments conducted in operating HTGRs indicate considerable uncertainty in the current methods and correlations used to predict actual temperatures. The objective of this project is to improve the accuracy in the prediction of local "hot" spots by developing multi-scale, multi-physics methods and implementing them within the framework of established codes used for NGNP analysis.The multi-scale approach which this project will implement begins with defining suitable scales for a physical and mathematical model and then deriving and applying the appropriate boundary conditions between scales. The macro scale is the greatest length that describes the entire reactor, whereas the meso scale models only a fuel block in a prismatic reactor and ten to hundreds of pebbles in a pebble bed reactor. The smallest scale is the micro scale--the level of a fuel kernel of the pebble in a PBR and fuel compact in a PMR--which needs to be resolved in order to calculate the peak temperature in a fuel kernel.

  2. General implications for CpG hot spot mutations: methylation patterns of the human iduronate-2-sulfatase gene locus.

    PubMed

    Tomatsu, Shunji; Orii, Koji O; Bi, Y; Gutierrez, Monica A; Nishioka, Tatsuo; Yamaguchi, Seiji; Kondo, Naomi; Orii, Tadao; Noguchi, Akihiko; Sly, William S

    2004-06-01

    The methylation pattern at CpG sites of a housekeeping gene correlates with the likelihood of mutation. Mucopolysaccharidosis (MPS) type II, an X-linked disorder, results from the deficiency of iduronate-2-sulfatase (IDS). In these patients, over 35% of independent point mutations at the IDS gene locus were found at CpG sites as transitional events. To gain insight into the relationship between methylation status and CpG hot spot mutations, we investigated patterns of cytosine methylation in the entire IDS gene, except for introns 4-8. Bisulfite genomic sequencing was performed on the normal leukocyte DNA. Our data show that: 1) cytosine methylation at the CpG sites was extensive, except for those present from the promoter region to a portion of intron 3; 2) a sharp boundary of methylated-nonmethylated regions was observed at the 5'-flanking region, whereas a gradual change in methylation was observed in the 2.0-kb segment in the 3'-flanking region; 3) the boundary of the 5'-flanking region contained multiple Sp1 sites and the TATA box; 4) the CpG sites in exons 1 and 2 were hypomethylated and were associated only with rare transitional mutations, while the CpG sites in exon 3 were also hypomethylated, yet were associated with a high rate of transitional mutations; 5) there was no striking sex difference in the methylation patterns in active alleles; and, 6) the methylation in both strands was symmetrical, except at the boundary of methylated-unmethylated regions.

  3. Catchments as heterogeneous and multi-species reactors: An integral approach for identifying biogeochemical hot-spots at the catchment scale

    NASA Astrophysics Data System (ADS)

    Weyer, Christina; Peiffer, Stefan; Schulze, Kerstin; Borken, Werner; Lischeid, Gunnar

    2014-11-01

    From a biogeochemical perspective, catchments can be regarded as reactors that transform the input of various substances via precipitation or deposition as they pass through soils and aquifers towards draining streams. Understanding and modeling the variability of solute concentrations in catchment waters require the identification of the prevailing processes, determining their respective contribution to the observed transformation of substances, and the localization of "hot spots", that is, the most reactive areas of catchments. For this study, we applied a non-linear variant of the Principle Component Analysis, the Isometric Feature Mapping (Isomap), to a data set composed of 1686 soil solution, groundwater and stream water samples and 16 variables (Al, Ca, Cl, Fe, K, Mg, Mn, Na, NH4, NO3, SO4, total S, Si, DOC, electric conductivity and pH values) from the Lehstenbach catchment in Germany. The aim was (i) to assess the contribution of the prevailing biogeochemical processes to the variability of solute concentrations in water samples taken from soils, in groundwater and in stream water in a catchment and (ii) to identify hot spots at the catchment scale with respect to 16 solutes along different flow paths. The first three dimensions of the Isomap analysis explained 48%, 30% and 11%, respectively, i.e. 89% of the variance in the data set. Scores of the first three dimensions could be ascribed to three predominating bundles of biogeochemical processes: (i) redox processes, (ii) acid-induced podzolization, and (iii) weathering processes. In general, the upper 1 m topsoil layer could be considered as hot spots along flow paths from upslope soils and in the wetland, although with varying extents for the different prevailing biogeochemical processes. Nearly 67% and 97% of the variance with respect to redox processes and acid induced podzolization could be traced back to hot spots, respectively, representing less than 2% of the total spatial volume of the catchment

  4. Enhanced Hot-Carrier Luminescence in Multilayer Reduced Graphene Oxide Nanospheres

    NASA Astrophysics Data System (ADS)

    Chen, Qi; Zhang, Chunfeng; Xue, Fei; Zhou, Yong; Li, Wei; Wang, Ye; Tu, Wenguang; Zou, Zhigang; Wang, Xiaoyong; Xiao, Min

    2013-07-01

    We report a method to promote photoluminescence emission in graphene materials by enhancing carrier scattering instead of directly modifying band structure in multilayer reduced graphene oxide (rGO) nanospheres. We intentionally curl graphene layers to form nanospheres by reducing graphene oxide with spherical polymer templates to manipulate the carrier scattering. These nanospheres produce hot-carrier luminescence with more than ten-fold improvement of emission efficiency as compared to planar nanosheets. With increasing excitation power, hot-carrier luminescence from nanospheres exhibits abnormal spectral redshift with dynamic feature associated to the strengthened electron-phonon coupling. These experimental results can be well understood by considering the screened Coulomb interactions. With increasing carrier density, the reduced screening effect promotes carrier scattering which enhances hot-carrier emission from such multilayer rGO nanospheres. This carrier-scattering scenario is further confirmed by pump-probe measurements.

  5. The hot-spot p53R172H mutant promotes formation of giant spermatogonia triggered by DNA damage.

    PubMed

    Xue, Y; Raharja, A; Sim, W; Wong, E S M; Rahmat, S A B; Lane, D P

    2017-04-06

    Overexpression of mutant p53 is a common finding in most cancers but testicular tumours accumulate wild-type p53 (wtp53). In contrast to the accepted concept that p53 homozygous mutant mice do not accumulate mutant p53 in normal cells, our study on a mutant p53 mouse model of Li-Fraumeni syndrome harbouring the hot-spot p53R172H mutation described an elevated level of mutant p53 in non-cancerous mouse tissues. Here we use detailed immunohistochemical analysis to document the expression of p53R172H in mouse testis. In developing and adult testes, p53R172H was expressed in gonocytes, type A, Int, B spermatogonia as well as in pre-Sertoli cells and Leydig cells but was undetectable in spermatocytes and spermatids. A similar staining pattern was demonstrated for wtp53. However, the intensity of wtp53 staining was generally weaker than that of p53R172H, which indicates that the expression of p53R172H can be a surrogate marker of p53 gene transcription. Comparing the responses of wtp53 and p53R172H to irradiation, we found persistent DNA double-strand breaks in p53R172H testes and the formation of giant spermatogonia (GSG) following persistent DNA damage in p53R172H and p53-null mice. Strikingly, we found that p53R172H promotes spontaneous formation of GSG in non-stressed p53R172H ageing mice. Two types of GSG: Viable and Degenerative GSG were defined. We elucidate the factors involved in the formation of GSG: the loss of p53 function is a requirement for the formation of GSG whereas DNA damage acts as a promoting trigger. The formation of GSG does not translate to higher efficacy of testicular tumorigenesis arising from mutant p53 cells, which might be due to the presence of delayed-onset of p53-independent apoptosis.

  6. Spatial and Temporal Hot Spots of Aedes albopictus Abundance inside and outside a South European Metropolitan Area

    PubMed Central

    Manica, Mattia; Filipponi, Federico; D’Alessandro, Antonello; Screti, Alessia; Neteler, Markus; Rosà, Roberto; Solimini, Angelo; della Torre, Alessandra; Caputo, Beniamino

    2016-01-01

    Aedes albopictus is a tropical invasive species which in the last decades spread worldwide, also colonizing temperate regions of Europe and US, where it has become a public health concern due to its ability to transmit exotic arboviruses, as well as severe nuisance problems due to its aggressive daytime outdoor biting behaviour. While several studies have been carried out in order to predict the potential limits of the species expansions based on eco-climatic parameters, few studies have so far focused on the specific effects of these variables in shaping its micro-geographic abundance and dynamics. The present study investigated eco-climatic factors affecting Ae. albopictus abundance and dynamics in metropolitan and sub-urban/rural sites in Rome (Italy), which was colonized in 1997 and is nowadays one of the most infested metropolitan areas in Southern Europe. To this aim, longitudinal adult monitoring was carried out along a 70 km-transect across and beyond the most urbanized and densely populated metropolitan area. Two fine scale spatiotemporal datasets (one with reference to a 20m circular buffer around sticky traps used to collect mosquitoes and the second to a 300m circular buffer within each sampling site) were exploited to analyze the effect of climatic and socio-environmental variables on Ae. albopictus abundance and dynamics along the transect. Results showed an association between highly anthropized habitats and high adult abundance both in metropolitan and sub-urban/rural areas, with “small green islands” corresponding to hot spots of abundance in the metropolitan areas only, and a bimodal seasonal dynamics with a second peak of abundance in autumn, due to heavy rains occurring in the preceding weeks in association with permissive temperatures. The results provide useful indications to prioritize public mosquito control measures in temperate urban areas where nuisance, human-mosquito contact and risk of local arbovirus transmission are likely higher

  7. Helium isotope variations between Réunion Island and the Central Indian Ridge (17°-21°S): New evidence for ridge-hot spot interaction

    NASA Astrophysics Data System (ADS)

    Füri, Evelyn; Hilton, David R.; Murton, Bramley J.; HéMond, Christophe; Dyment, JéRome; Day, James M. D.

    2011-02-01

    We report new helium abundance and isotope results for submarine basaltic glasses from the Central Indian Ridge (CIR) between the Marie Celeste (16.7°S) and Egeria fracture zones (FZ) (20.6°S); the adjacent Gasitao, Three Magi, and Rodrigues ridges; and for olivine separates from lavas and cumulate xenoliths from the Mascarene Islands (Réunion, Mauritius, and