Reef Development on Artificial Patch Reefs in Shallow Water of Panjang Island, Central Java

NASA Astrophysics Data System (ADS)

Munasik; Sugiyanto; Sugianto, Denny N.; Sabdono, Agus

2018-02-01

Reef restoration methods are generally developed by propagation of coral fragments, coral recruits and provide substrate for coral attachment using artificial reefs (ARs). ARs have been widely applied as a tool for reef restoration in degraded natural reefs. Successful of coral restoration is determined by reef development such as increasing coral biomass, natural of coral recruits and fauna associated. Artificial Patch Reefs (APRs) is designed by combined of artificial reefs and coral transplantation and constructed by modular circular structures in shape, were deployed from small boats by scuba divers, and are suitable near natural reefs for shallow water with low visibility of Panjang Island, Central Java. Branching corals of Acropora aspera, Montipora digitata and Porites cylindrica fragments were transplanted on to each module of two units of artificial patch reefs in different periods. Coral fragments of Acropora evolved high survival and high growth, Porites fragments have moderate survival and low growth, while fragment of Montipora show in low survival and moderate growth. Within 19 to 22 months of APRs deployment, scleractinian corals were recruited on the surface of artificial patch reef substrates. The most recruits abundant was Montastrea, followed by Poritids, Pocilloporids, and Acroporids. We conclude that artificial patch reefs with developed by coral fragments and natural coral recruitment is one of an alternative rehabilitation method in shallow reef with low visibility.

Postglacial Fringing-Reef to Barrier-Reef conversion on Tahiti links Darwin's reef types

NASA Astrophysics Data System (ADS)

Blanchon, Paul; Granados-Corea, Marian; Abbey, Elizabeth; Braga, Juan C.; Braithwaite, Colin; Kennedy, David M.; Spencer, Tom; Webster, Jody M.; Woodroffe, Colin D.

2014-05-01

In 1842 Charles Darwin claimed that vertical growth on a subsiding foundation caused fringing reefs to transform into barrier reefs then atolls. Yet historically no transition between reef types has been discovered and they are widely considered to develop independently from antecedent foundations during glacio-eustatic sea-level rise. Here we reconstruct reef development from cores recovered by IODP Expedition 310 to Tahiti, and show that a fringing reef retreated upslope during postglacial sea-level rise and transformed into a barrier reef when it encountered a Pleistocene reef-flat platform. The reef became stranded on the platform edge, creating a lagoon that isolated it from coastal sediment and facilitated a switch to a faster-growing coral assemblage dominated by acroporids. The switch increased the reef's accretion rate, allowing it to keep pace with rising sea level, and transform into a barrier reef. This retreat mechanism not only links Darwin's reef types, but explains the re-occupation of reefs during Pleistocene glacio-eustacy.

The wicked problem of China's disappearing coral reefs.

PubMed

Hughes, Terry P; Huang, Hui; Young, Matthew A L

2013-04-01

We examined the development of coral reef science and the policies, institutions, and governance frameworks for management of coral reefs in China in order to highlight the wicked problem of preserving reefs while simultaneously promoting human development and nation building. China and other sovereign states in the region are experiencing unprecedented economic expansion, rapid population growth, mass migration, widespread coastal development, and loss of habitat. We analyzed a large, fragmented literature on the condition of coral reefs in China and the disputed territories of the South China Sea. We found that coral abundance has declined by at least 80% over the past 30 years on coastal fringing reefs along the Chinese mainland and adjoining Hainan Island. On offshore atolls and archipelagos claimed by 6 countries in the South China Sea, coral cover has declined from an average of >60% to around 20% within the past 10-15 years. Climate change has affected these reefs far less than coastal development, pollution, overfishing, and destructive fishing practices. Ironically, these widespread declines in the condition of reefs are unfolding as China's research and reef-management capacity are rapidly expanding. Before the loss of corals becomes irreversible, governance of China's coastal reefs could be improved by increasing public awareness of declining ecosystem services, by providing financial support for training of reef scientists and managers, by improving monitoring of coral reef dynamics and condition to better inform policy development, and by enforcing existing regulations that could protect coral reefs. In the South China Sea, changes in policy and legal frameworks, refinement of governance structures, and cooperation among neighboring countries are urgently needed to develop cooperative management of contested offshore reefs. © 2012 Society for Conservation Biology.

The influence of sea level and cyclones on Holocene reef flat development: Middle Island, central Great Barrier Reef

NASA Astrophysics Data System (ADS)

Ryan, E. J.; Smithers, S. G.; Lewis, S. E.; Clark, T. R.; Zhao, J. X.

2016-09-01

The geomorphology and chronostratigraphy of the reef flat (including microatoll ages and elevations) were investigated to better understand the long-term development of the reef at Middle Island, inshore central Great Barrier Reef. Eleven cores across the fringing reef captured reef initiation, framework accretion and matrix sediments, allowing a comprehensive appreciation of reef development. Precise uranium-thorium ages obtained from coral skeletons revealed that the reef initiated ~7873 ± 17 years before present (yBP), and most of the reef was emplaced in the following 1000 yr. Average rates of vertical reef accretion ranged between 3.5 and 7.6 mm yr-1. Reef framework was dominated by branching corals ( Acropora and Montipora). An age hiatus of ~5000 yr between 6439 ± 19 and 1617 ± 10 yBP was observed in the core data and attributed to stripping of the reef structure by intense cyclones during the mid- to late-Holocene. Large shingle ridges deposited onshore and basset edges preserved on the reef flat document the influence of cyclones at Middle Island and represent potential sinks for much of the stripped material. Stripping of the upper reef structure around the outer margin of the reef flat by cyclones created accommodation space for a thin (<1.2 m) veneer of reef growth after 1617 ± 10 yBP that grew over the eroded mid-Holocene reef structure. Although limited fetch and open-water exposure might suggest the reef flat at Middle Island is quite protected, our results show that high-energy waves presumably generated by cyclones have significantly influenced both Holocene reef growth and contemporary reef flat geomorphology.

From artificial structures to self-sustaining oyster reefs

NASA Astrophysics Data System (ADS)

Walles, Brenda; Troost, Karin; van den Ende, Douwe; Nieuwhof, Sil; Smaal, Aad C.; Ysebaert, Tom

2016-02-01

Coastal ecosystems are increasingly recognized as essential elements within coastal defence schemes and coastal adaptation. The capacity of coastal ecosystems, like marshes and oyster reefs, to maintain their own habitat and grow with sea-level rise via biophysical feedbacks is seen as an important advantage of such systems compared to man-made hard engineering structures. Providing a suitable substrate for oysters to settle on offers a kick-start for establishment at places where they were lost or are desirable for coastal protection. Accumulation of shell material, through recruitment and growth, is essential to the maintenance of oyster reefs as it provides substrate for new generations (positive feedback loop), forming a self-sustainable structure. Insight in establishment, survival and growth thresholds and knowledge about the population dynamics are necessary to successfully implement oyster reefs in coastal defence schemes. The aim of this paper is to investigate whether artificial Pacific oyster reefs develop into self-sustaining oyster reefs that contribute to coastal protection. Reef development was investigated by studying recruitment, survival and growth rates of oysters on artificial oyster reefs in comparison with nearby natural Pacific oyster reefs. The artificial reef structure successfully offered substrate for settlement of oysters and therefore stimulated reef formation. Reef development, however, was hampered by local sedimentation and increasing tidal emersion. Tidal emersion is an important factor that can be used to predict where artificial oyster reefs have the potential to develop into self-sustaining reefs that could contribute to coastal protection, but it is also a limiting factor in using oyster reefs for coastal protection.

Mitochondrial Genome Rearrangements in the Scleractinia/Corallimorpharia Complex: Implications for Coral Phylogeny

PubMed Central

Lin, Mei-Fang; Kitahara, Marcelo Visentini; Luo, Haiwei; Tracey, Dianne; Geller, Jonathan; Fukami, Hironobu; Miller, David John; Chen, Chaolun Allen

2014-01-01

Corallimorpharia is a small Order of skeleton-less animals that is closely related to the reef-building corals (Scleractinia) and of fundamental interest in the context of understanding the potential impacts of climate change in the future on coral reefs. The relationship between the nominal Orders Corallimorpharia and Scleractinia is controversial—the former is either the closest outgroup to the Scleractinia or alternatively is derived from corals via skeleton loss. This latter scenario, the “naked coral” hypothesis, is strongly supported by analyses based on mitochondrial (mt) protein sequences, whereas the former is equally strongly supported by analyses of mt nucleotide sequences. The “naked coral” hypothesis seeks to link skeleton loss in the putative ancestor of corallimorpharians with a period of elevated oceanic CO2 during the Cretaceous, leading to the idea that these skeleton-less animals may be harbingers for the fate of coral reefs under global climate change. In an attempt to better understand their evolutionary relationships, we examined mt genome organization in a representative range (12 species, representing 3 of the 4 extant families) of corallimorpharians and compared these patterns with other Hexacorallia. The most surprising finding was that mt genome organization in Corallimorphus profundus, a deep-water species that is the most scleractinian-like of all corallimorpharians on the basis of morphology, was much more similar to the common scleractinian pattern than to those of other corallimorpharians. This finding is consistent with the idea that C. profundus represents a key position in the coral <-> corallimorpharian transition. PMID:24769753

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kauffman, E.G.

Throughout the Mesozoic, shallow-water carbonate ramps and platforms of the circumequatorial Tethyan Ocean were characterized by extensive development of reef ecosystems, especially during times of eustatic highstand, expansion of the Tropics, and warm equable global climates. The greatest reef development was north of the paleoequator in the Caribbean and Indo-Mediterranean provinces. These reefs and associated debris facies comprise major petroleum reservoirs, in some cases with remarkable porosity and permeability normally attributed to a combination of sedimentologic, tectonic, and diagenetic factors. The biological evolution of Mesozoic reefs also has had an important, and in some cases dominant, role in determining reservoirmore » quality. Three major biological factors are critical to mesozoic reef-associated reservoir development: (1) the replacement/competitive displacement of coral-algal dominated, highly integrated reef ecosystems by loosely packed rudistid bivalve-dominated reef ecosystems in the Barremian-Albian; (2) the evolution of dominantly aragonitic, highly porous shells among framework-building rudistids in the middle and Late Cretaceous; and (3) competitive strategies among rudistids that effectively prevented widespread biological binding of Cretaceous reefs, leading to the production of large marginal fans that comprise major carbonate reservoirs. Detailed studies of these evolutionary trends in reef/framework development and of the distribution of different groups of bioconstructors on reefs lead to predictive modeling for primary and secondary porosity development in mesozoic carbonate reservoirs. The competitive displacement of coral-algal communities by rudistids on Cretaceous reefs was so effective that, even after Maastrichtian mass extinction of rudistids and other important groups comprising Mesozoic reef/carbonate platform ecosystems, coral-algal reef-building communities did not evolve again until the late Eocene.« less

Protein expression and genetic structure of the coral Porites lobata in an environmentally extreme Samoan back reef: Does host genotype limit phenotypic plasticity?

USGS Publications Warehouse

Barshis, D.J.; Stillman, J.H.; Gates, R.D.; Toonen, R.J.; Smith, L.W.; Birkeland, C.

2010-01-01

The degree to which coral reef ecosystems will be impacted by global climate change depends on regional and local differences in corals' susceptibility and resilience to environmental stressors. Here, we present data from a reciprocal transplant experiment using the common reef building coral Porites lobata between a highly fluctuating back reef environment that reaches stressful daily extremes, and a more stable, neighbouring forereef. Protein biomarker analyses assessing physiological contributions to stress resistance showed evidence for both fixed and environmental influence on biomarker response. Fixed influences were strongest for ubiquitin-conjugated proteins with consistently higher levels found in back reef source colonies both pre and post-transplant when compared with their forereef conspecifics. Additionally, genetic comparisons of back reef and forereef populations revealed significant population structure of both the nuclear ribosomal and mitochondrial genomes of the coral host (FST = 0.146 P < 0.0001, FST = 0.335 P < 0.0001 for rDNA and mtDNA, respectively), whereas algal endosymbiont populations were genetically indistinguishable between the two sites. We propose that the genotype of the coral host may drive limitations to the physiological responses of these corals when faced with new environmental conditions. This result is important in understanding genotypic and environmental interactions in the coral algal symbiosis and how corals may respond to future environmental changes. ?? 2010 Blackwell Publishing Ltd.

Distribution of CpG Motifs in Upstream Gene Domains in a Reef Coral and Sea Anemone: Implications for Epigenetics in Cnidarians.

PubMed

Marsh, Adam G; Hoadley, Kenneth D; Warner, Mark E

2016-01-01

Coral reefs are under assault from stressors including global warming, ocean acidification, and urbanization. Knowing how these factors impact the future fate of reefs requires delineating stress responses across ecological, organismal and cellular scales. Recent advances in coral reef biology have integrated molecular processes with ecological fitness and have identified putative suites of temperature acclimation genes in a Scleractinian coral Acropora hyacinthus. We wondered what unique characteristics of these genes determined their coordinate expression in response to temperature acclimation, and whether or not other corals and cnidarians would likewise possess these features. Here, we focus on cytosine methylation as an epigenetic DNA modification that is responsive to environmental stressors. We identify common conserved patterns of cytosine-guanosine dinucleotide (CpG) motif frequencies in upstream promoter domains of different functional gene groups in two cnidarian genomes: a coral (Acropora digitifera) and an anemone (Nematostella vectensis). Our analyses show that CpG motif frequencies are prominent in the promoter domains of functional genes associated with environmental adaptation, particularly those identified in A. hyacinthus. Densities of CpG sites in upstream promoter domains near the transcriptional start site (TSS) are 1.38x higher than genomic background levels upstream of -2000 bp from the TSS. The increase in CpG usage suggests selection to allow for DNA methylation events to occur more frequently within 1 kb of the TSS. In addition, observed shifts in CpG densities among functional groups of genes suggests a potential role for epigenetic DNA methylation within promoter domains to impact functional gene expression responses in A. digitifera and N. vectensis. Identifying promoter epigenetic sequence motifs among genes within specific functional groups establishes an approach to describe integrated cellular responses to environmental stress in reef corals and potential roles of epigenetics on survival and fitness in the face of global climate change.

Adaptation to reef habitats through selection on the coral animal and its associated microbiome.

PubMed

van Oppen, Madeleine J H; Bongaerts, Pim; Frade, Pedro; Peplow, Lesa M; Boyd, Sarah E; Nim, Hieu T; Bay, Line K

2018-06-13

Spatially adjacent habitats on coral reefs can represent highly distinct environments, often harbouring different coral communities. Yet, certain coral species thrive across divergent environments. It is unknown whether the forces of selection are sufficiently strong to overcome the counteracting effects of the typically high gene flow over short distances, and for local adaptation to occur. We screened the coral genome (using restriction-site-associated sequencing [RAD-seq]), and characterized both the dinoflagellate photosymbiont and tissue-associated prokaryote microbiomes (using metabarcoding) of a reef flat and slope population of the reef-building coral, Pocillopora damicornis, at two locations on Heron Island in the southern Great Barrier Reef. Reef flat and slope populations were separated by <100 m horizontally and ~5 m vertically and the two study locations were separated by ~1 km. For the coral host, genetic divergence between habitats was much greater than between locations, suggesting limited gene flow between the flat and slope populations. Consistent with environmental selection, outlier loci primarily belonged to the conserved, minimal cellular stress response, likely reflecting adaptation to the different temperature and irradiance regimes on the reef flat and slope. Similarly, the prokaryote community differed across both habitat and, to a lesser extent, location, whereas the dinoflagellate photosymbionts differed by habitat but not location. The observed intra-specific diversity associated with divergent habitats supports that environmental adaptation involves multiple members of the coral holobiont. Adaptive alleles or microbial associations present in coral populations from the environmentally-variable reef flat may provide a source of adaptive variation for assisted evolution approaches, through assisted gene flow, artificial cross-breeding or probiotic inoculations, with the aim to increase climate resilience in the slope populations. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Developing a multi-stressor gradient for coral reefs

EPA Science Inventory

Coral reefs are often found near coastal waters where multiple anthropogenic stressors co-occur at areas of human disturbance. Developing coral reef biocriteria under the U.S. Clean Water Act requires relationships between anthropogenic stressors and coral reef condition to be es...

Poorly cemented coral reefs of the eastern tropical Pacific: possible insights into reef development in a high-CO2 world.

PubMed

Manzello, Derek P; Kleypas, Joan A; Budd, David A; Eakin, C Mark; Glynn, Peter W; Langdon, Chris

2008-07-29

Ocean acidification describes the progressive, global reduction in seawater pH that is currently underway because of the accelerating oceanic uptake of atmospheric CO(2). Acidification is expected to reduce coral reef calcification and increase reef dissolution. Inorganic cementation in reefs describes the precipitation of CaCO(3) that acts to bind framework components and occlude porosity. Little is known about the effects of ocean acidification on reef cementation and whether changes in cementation rates will affect reef resistance to erosion. Coral reefs of the eastern tropical Pacific (ETP) are poorly developed and subject to rapid bioerosion. Upwelling processes mix cool, subthermocline waters with elevated pCO(2) (the partial pressure of CO(2)) and nutrients into the surface layers throughout the ETP. Concerns about ocean acidification have led to the suggestion that this region of naturally low pH waters may serve as a model of coral reef development in a high-CO(2) world. We analyzed seawater chemistry and reef framework samples from multiple reef sites in the ETP and found that a low carbonate saturation state (Omega) and trace abundances of cement are characteristic of these reefs. These low cement abundances may be a factor in the high bioerosion rates previously reported for ETP reefs, although elevated nutrients in upwelled waters may also be limiting cementation and/or stimulating bioerosion. ETP reefs represent a real-world example of coral reef growth in low-Omega waters that provide insights into how the biological-geological interface of coral reef ecosystems will change in a high-CO(2) world.

The complete mitochondrial genome of the cryptic "lineage B" big-fin reef squid, Sepioteuthis lessoniana (Cephalopoda: Loliginidae) in Indo-West Pacific.

PubMed

Shen, Kang-Ning; Yen, Ta-Chi; Chen, Ching-Hung; Ye, Jeng-Jia; Hsiao, Chung-Der

2016-05-01

In this study, the complete mitogenome sequence of the cryptic "lineage B" big-fin reef squid, Sepioteuthis lessoniana (Cephalopoda: Loliginidae) has been sequenced by next-generation sequencing method. The assembled mitogenome consisting of 16,694 bp, includes 13 protein coding genes, 25 transfer RNAs, 2 ribosomal RNAs genes. The overall base composition of "lineage B" S. lessoniana is 36.7% for A, 18.9 % for C, 34.5 % for T and 9.8 % for G and show 90% identities to "lineage C" S. lessoniana. It is also exhibits high T + A content (71.2%), two non-coding regions with TA tandem repeats. The complete mitogenome of the cryptic "lineage B" S. lessoniana provides essential and important DNA molecular data for further phylogeography and evolutionary analysis for big-fin reef squid species complex.

The complete mitochondrial genome of the cryptic "lineage A" big-fin reef squid, Sepioteuthis lessoniana (Cephalopoda: Loliginidae) in Indo-West Pacific.

PubMed

Hsiao, Chung-Der; Shen, Kang-Ning; Ching, Tzu-Yun; Wang, Ya-Hsien; Ye, Jeng-Jia; Tsai, Shiou-Yi; Wu, Shan-Chun; Chen, Ching-Hung; Wang, Chia-Hui

2016-07-01

In this study, the complete mitogenome sequence of the cryptic "lineage A" big-fin reef squid, Sepioteuthis lessoniana (Cephalopoda: Loliginidae) has been sequenced by the next-generation sequencing method. The assembled mitogenome consists of 16,605 bp, which includes 13 protein-coding genes, 22 transfer RNAs, and 2 ribosomal RNAs genes. The overall base composition of "lineage A" S. lessoniana is 37.5% for A, 17.4% for C, 9.1% for G, and 35.9% for T and shows 87% identities to "lineage C" S. lessoniana. It is also noticed by its high T + A content (73.4%), two non-coding regions with TA tandem repeats. The complete mitogenome of the cryptic "lineage A" S. lessoniana provides essential and important DNA molecular data for further phylogeography and evolutionary analysis for big-fin reef squid species complex.

Intra-genomic variation in symbiotic dinoflagellates: recent divergence or recombination between lineages?

PubMed

Wilkinson, Shaun P; Fisher, Paul L; van Oppen, Madeleine J H; Davy, Simon K

2015-03-14

The symbiosis between corals and the dinoflagellate alga Symbiodinium is essential for the development and survival of coral reefs. Yet this fragile association is highly vulnerable to environmental disturbance. A coral's ability to tolerate temperature stress depends on the fitness of its resident symbionts, whose thermal optima vary extensively between lineages. However, the in hospite population genetic structure of Symbiodinium is poorly understood and mostly based on analysis of bulk DNA extracted from thousands to millions of cells. Using quantitative single-cell PCR, we enumerated DNA polymorphisms in the symbionts of the reef-building coral Pocillopora damicornis, and applied a model selection approach to explore the potential for recombination between coexisting Symbiodinium populations. Two distinct Symbiodinium ITS2 sequences (denoted C100 and C109) were retrieved from all P. damicornis colonies analysed. However, the symbiont assemblage consisted of three distinct Symbiodinium populations: cells featuring pure arrays of ITS2 type C109, near-homogeneous cells of type C100 (with trace ITS2 copies of type C109), and those with co-dominant C100 and C109 ITS2 repeats. The symbiont consortia of some colonies consisted almost entirely of these putative C100 × C109 recombinants. Our results are consistent with the occurrence of sexual recombination between Symbiodinium types C100 and C109. While the multiple-copy nature of the ITS2 dictates that the observed pattern of intra-genomic co-dominance may be a result of incomplete concerted evolution of intra-genomic polymorphisms, this is a less likely explanation given the occurrence of homogeneous cells of the C109 type. Conclusive evidence for inter-lineage recombination and introgression in this genus will require either direct observational evidence or a single-cell genotyping approach targeting multiple, single-copy loci.

The distribution of intra-genomically variable dinoflagellate symbionts at Lord Howe Island, Australia

NASA Astrophysics Data System (ADS)

Wilkinson, Shaun P.; Pontasch, Stefanie; Fisher, Paul L.; Davy, Simon K.

2016-06-01

The symbiotic dinoflagellates of corals and other marine invertebrates ( Symbiodinium) are essential to the development of shallow-water coral reefs. This genus contains considerable genetic diversity and a corresponding range of physiological and ecological traits. Most genetic variation arises through the accumulation of somatic mutations that arise during asexual reproduction. Yet growing evidence suggests that occasional sexual reproductive events also occur within, and perhaps between, Symbiodinium lineages, further contributing to the pool of genetic variation available for evolutionary adaptation. Intra-genomic variation can therefore arise from both sexual and asexual reproductive processes, making it difficult to discern its underlying causes and consequences. We used quantitative PCR targeting the ITS2 locus to estimate proportions of genetically homogeneous symbionts and intra-genomically variable Symbiodinium (IGV Symbiodinium) in the reef-building coral Pocillopora damicornis at Lord Howe Island, Australia. We then sampled colonies through time and at a variety of spatial scales to find out whether the distribution of these symbionts followed patterns consistent with niche partitioning. Estimated ratios of homogeneous to IGV Symbiodinium varied between colonies within sites (metres to tens of metres) and between sites separated by hundreds to thousands of metres, but remained stable within colonies through time. Symbiont ratios followed a temperature gradient, with the local thermal maximum emerging as a negative predictor for the estimated proportional abundance of IGV Symbiodinium. While this pattern may result from fine-scale spatial population structure, it is consistent with an increased susceptibility to thermal stress, suggesting that the evolutionary processes that generate IGV (such as inter-lineage recombination and the accumulation of somatic mutations at the ITS2 locus) may have important implications for the fitness of the symbiont and that of the coral host.

Onondage pinnacle reefs in New York State

DOE Office of Scientific and Technical Information (OSTI.GOV)

Friedman, G.M.

1995-09-01

Onondaga pinnacle reefs, part of the Onondaga Formation, developed in an epeiric setting of the lowermost Middle Devonian (Eifelian). The reefs were initiated as coral-crinoidal mounds in the Edgecliff Member of the formation. Whereas most Devonian reefs are composed of rugose corals. Coral is the predominant kind of fossil, followed by crinoids, brachiopods, mollusks, undifferentiated skeletal debris, and possible sponges. The initial mineralogy of the corals is inferred to have been calcite. The porosity of these reefs is almost unique among reef reservoirs. most reefs produce from secondary or diagenetic porosity; by contrast Onondaga reefs display primary intracoralline or frameworkmore » porosity. Between framework builders and/or skeletal particles cryptocrystalline/microcrystalline cement fills pores. As observed in modern reefs this kind of cement resembles micrite, but probable formed as high-magnesian calcite in a high-energy setting. Syntaxial or rim cement common lines crinoid particles. Some of these pinnacle reefs, formerly gas producers, are presently under development as gas-storage reservoirs.« less

The structure and composition of Holocene coral reefs in the Middle Florida Keys

USGS Publications Warehouse

Toth, Lauren T.; Stathakopoulos, Anastasios; Kuffner, Ilsa B.

2016-07-21

The Florida Keys reef tract (FKRT) is the largest coral-reef ecosystem in the continental United States. The modern FKRT extends for 362 kilometers along the coast of South Florida from Dry Tortugas National Park in the southwest, through the Florida Keys National Marine Sanctuary (FKNMS), to Fowey Rocks reef in Biscayne National Park in the northeast. Most reefs along the FKRT are sheltered by the exposed islands of the Florida Keys; however, large channels are located between the islands of the Middle Keys. These openings allow for tidal transport of water from Florida Bay onto reefs in the area. The characteristics of the water masses coming from Florida Bay, which can experience broad swings in temperature, salinity, nutrients, and turbidity over short periods of time, are generally unfavorable or “inimical” to coral growth and reef development.Although reef habitats are ubiquitous throughout most of the Upper and Lower Keys, relatively few modern reefs exist in the Middle Keys most likely because of the impacts of inimical waters from Florida Bay. The reefs that are present in the Middle Keys generally are poorly developed compared with reefs elsewhere in the region. For example, Acropora palmata has been the dominant coral on shallow-water reefs in the Caribbean over the last 1.5 million years until populations of the coral declined throughout the region in recent decades. Although A. palmata was historically abundant in the Florida Keys, it was conspicuously absent from reefs in the Middle Keys. Instead, contemporary reefs in the Middle Keys have been dominated by occasional massive (that is, boulder or head) corals and, more often, small, non-reef-building corals.Holocene reef cores have been collected from many locations along the FKRT; however, despite the potential importance of the history of reefs in the Middle Florida Keys to our understanding of the environmental controls on reef development throughout the FKRT, there are currently no published records of the Holocene history of reefs in the region. The objectives of the present study were to (1) provide general descriptions of unpublished core records from Alligator Reef and (2) collect and describe new Holocene reef cores from two additional locations in the Middle Keys: Sombrero and Tennessee Reefs.

ReefLink Database: A decision support tool for Linking Coral Reefs and Society Through Systems Thinking

EPA Science Inventory

Coral reefs provide the ecological foundation for productive and diverse fish and invertebrate communities that support multibillion dollar reef fishing and tourism industries. Yet reefs are threatened by growing coastal development, climate change, and over-exploitation. A key i...

Palaeoecological records of coral community development on a turbid, nearshore reef complex: baselines for assessing ecological change

NASA Astrophysics Data System (ADS)

Johnson, J. A.; Perry, C. T.; Smithers, S. G.; Morgan, K. M.; Santodomingo, N.; Johnson, K. G.

2017-09-01

Understanding past coral community development and reef growth is crucial for placing contemporary ecological and environmental change within appropriate reef-building timescales. On Australia's Great Barrier Reef (GBR), coral reefs situated within coastal inner-shelf zones are a particular priority. This is due to their close proximity to river point sources, and therefore susceptibility to reduced water quality discharged from coastal catchments, many of which have been modified following European settlement (ca. 1850 AD). However, the extent of water-quality decline and its impacts on the GBR's inner-shelf reefs remain contentious. In this study, palaeoecological coral assemblage records were developed for five proximal coral reefs situated within a nearshore turbid-zone reef complex on the central GBR. A total of 29 genera of Scleractinia were identified from the palaeoecological inventory of the reef complex, with key contributions to reef-building made by Acropora, Montipora, and Turbinaria. Discrete intervals pre- and post-dating European settlement, but associated with equivalent water depths, were identified using Bayesian age-depth modelling, enabling investigation of competing ideas of the main drivers of nearshore coral assemblage change. Specifically, we tested the hypotheses that changes in the composition of nearshore coral assemblages are: (1) intrinsically driven and linked to vertical reef development towards sea level, and (2) the result of changes in water quality associated with coastal river catchment modification. Our records found no discernible evidence of change in the generic composition of coral assemblages relative to European settlement. Instead, two distinctive depth-stratified assemblages were identified. This study demonstrates the robust nature of nearshore coral communities under reported water-quality decline and provides a useful context for the monitoring and assessment of ecological change on reefs located within the most nearshore turbid-zone environments of the central GBR.

Temporal variation in development of ecosystem services from oyster reef restoration

USGS Publications Warehouse

LaPeyre, Megan K.; Humphries, Austin T.; Casas, Sandra M.; La Peyre, Jerome F.

2014-01-01

Restoration ecology relies heavily on ecosystem development theories that generally assume development of fully functioning natural systems over time, but often fail to identify the time-frame required for provision of desired functions, or acknowledge different pathways of functional development. In estuaries, a decline of overall habitat quality and functioning has led to significant efforts to restore critical ecosystem services, recently through the creation and restoration of oyster reefs. Oyster reef restoration generally occurs with goals of (1) increasing water quality via filtration through sustainable oyster recruitment, (2) stabilizing shorelines, and (3) creating and enhancing critical estuarine habitat for fish and invertebrates. We restored over 260 m2 of oyster reef habitat in coastal Louisiana and followed the development and provision of these ecosystem services from 2009 through 2012. Oysters recruited to reefs immediately, with densities of oysters greater than 75 mm exceeding 80 ind m−2 after 3 years, and provision of filtration rates of 1002 ± 187 L h−1 m−2; shoreline stabilization effects of the created reefs were minimal over the three years of monitoring, with some evidence of positive shoreline stabilization during higher wind/energy events only; increased nekton abundance of resident, but not larger transient fish was immediately measurable at the reefs, however, this failed to increase through time. Our results provide critical insights into the development trajectories of ecosystem services provided by restored oyster reefs, as well as the mechanisms mediating these changes. This is critical both ecologically to understand how and where a reef thrives, and for policy and management to guide decision-making related to oyster reef restoration and the crediting and accounting of ecosystem services.

Wave- and tidally-driven flow and sediment flux across a fringing coral reef: Southern Molokai, Hawaii

USGS Publications Warehouse

Storlazzi, C.D.; Ogston, A.S.; Bothner, Michael H.; Field, M.E.; Presto, M.K.

2004-01-01

The fringing coral reef off the south coast of Molokai, Hawaii is currently being studied as part of a US Geological Survey (USGS) multi-disciplinary project that focuses on geologic and oceanographic processes that affect coral reef systems. For this investigation, four instrument packages were deployed across the fringing coral reef during the summer of 2001 to understand the processes governing fine-grained terrestrial sediment suspension on the shallow reef flat (h=1m) and its advection across the reef crest and onto the deeper fore reef. The time-series measurements suggest the following conceptual model of water and fine-grained sediment transport across the reef: Relatively cool, clear water flows up onto the reef flat during flooding tides. At high tide, more deep-water wave energy is able to propagate onto the reef flat and larger Trade wind-driven waves can develop on the reef flat, thereby increasing sediment suspension. Trade wind-driven surface currents and wave breaking at the reef crest cause setup of water on the reef flat, further increasing the water depth and enhancing the development of depth-limited waves and sediment suspension. As the tide ebbs, the water and associated suspended sediment on the reef flat drains off the reef flat and is advected offshore and to the west by Trade wind- and tidally- driven currents. Observations on the fore reef show relatively high turbidity throughout the water column during the ebb tide. It therefore appears that high suspended sediment concentrations on the deeper fore reef, where active coral growth is at a maximum, are dynamically linked to processes on the muddy, shallow reef flat.

Multiple outer-reef tracts along the south Florida bank margin: Outlier reefs, a new windward-margin model

USGS Publications Warehouse

Lidz, Barbara H.; Hine, A.C.; Shinn, Eugene A.; Kindinger, Jack G.

1991-01-01

High-resolution seismic-reflection profiles off the lower Florida Keys reveal a multiple outlier-reef tract system ~0.5 to 1.5 km sea-ward of the bank margin. The system is characterized by a massive, outer main reef tract of high (28 m) unburied relief that parallels the margin and at least two narrower, discontinuous reef tracts of lower relief between the main tract and the shallow bank-margin reefs. The outer tract is ~0.5 to 1 km wide and extends a distance of ~57 km. A single pass divides the outer tract into two main reefs. The outlier reefs developed on antecedent, low-gradient to horizontal offbank surfaces, interpreted to be Pleistocene beaches that formed terracelike features. Radiocarbon dates of a coral core from the outer tract confirm a pre-Holocene age. These multiple outlier reefs represent a new windward-margin model that presents a significant, unique mechanism for progradation of carbonate platforms during periods of sea-level fluctuation. Infilling of the back-reef terrace basins would create new terraced promontories and would extend or "step" the platform seaward for hundreds of metres. Subsequent outlier-reef development would produce laterally accumulating sequences.

Preserving and Using Germplasm and Dissociated Embryonic Cells for Conserving Caribbean and Pacific Coral

PubMed Central

Hagedorn, Mary; Carter, Virginia; Martorana, Kelly; Paresa, Malia K.; Acker, Jason; Baums, Iliana B.; Borneman, Eric; Brittsan, Michael; Byers, Michael; Henley, Michael; Laterveer, Michael; Leong, Jo-Ann; McCarthy, Megan; Meyers, Stuart; Nelson, Brian D.; Petersen, Dirk; Tiersch, Terrence; Uribe, Rafael Cuevas; Woods, Erik; Wildt, David

2012-01-01

Coral reefs are experiencing unprecedented degradation due to human activities, and protecting specific reef habitats may not stop this decline, because the most serious threats are global (i.e., climate change), not local. However, ex situ preservation practices can provide safeguards for coral reef conservation. Specifically, modern advances in cryobiology and genome banking could secure existing species and genetic diversity until genotypes can be introduced into rehabilitated habitats. We assessed the feasibility of recovering viable sperm and embryonic cells post-thaw from two coral species, Acropora palmata and Fungia scutaria that have diffferent evolutionary histories, ecological niches and reproductive strategies. In vitro fertilization (IVF) of conspecific eggs using fresh (control) spermatozoa revealed high levels of fertilization (>90% in A. palmata; >84% in F. scutaria; P>0.05) that were unaffected by tested sperm concentrations. A solution of 10% dimethyl sulfoxide (DMSO) at cooling rates of 20 to 30°C/min most successfully cryopreserved both A. palmata and F. scutaria spermatozoa and allowed producing developing larvae in vitro. IVF success under these conditions was 65% in A. palmata and 53% in F. scutaria on particular nights; however, on subsequent nights, the same process resulted in little or no IVF success. Thus, the window for optimal freezing of high quality spermatozoa was short (∼5 h for one night each spawning cycle). Additionally, cryopreserved F. scutaria embryonic cells had∼50% post-thaw viability as measured by intact membranes. Thus, despite some differences between species, coral spermatozoa and embryonic cells are viable after low temperature (−196°C) storage, preservation and thawing. Based on these results, we have begun systematically banking coral spermatozoa and embryonic cells on a large-scale as a support approach for preserving existing bio- and genetic diversity found in reef systems. PMID:22413020

Characterisation of a Novel Retrovirus and a dsDNA Virus Infecting the Coral Algal Endosymbiont, Symbiodinium sp.

NASA Astrophysics Data System (ADS)

Weynberg, K. D.; Neave, M. J.; Clode, P. L.; Voolstra, C. R.; Brownlee, C.; Laffy, P.; Webster, N.; Levin, R.; Wood-Charlson, E.; van Oppen, M. J.

2016-02-01

Research into viruses associated with coral reefs is a newly emerging field. Corals form an important symbiotic relationship with the dinoflagellate species Symbiodinium, which the coral relies heavily upon for nutrients and calcification. Coral bleaching is the result of disruption of this symbiosis when the algae and/or its photosynthetic pigments are lost from the coral tissues. Environmental stressors, including elevated sea surface temperatures and increased UV light exposure, have been implicated in coral bleaching. We set out to test the hypothesis that Symbiodinium in culture plays host to a latent virus that switches to a lytic infection under stress, such as UV exposure or elevated temperature. Analysis of Symbiodinium cultures (isolated from corals on the Great Barrier Reef) using flow cytometry and transmission electron microscopy (TEM), revealed an active viral infection was ongoing, regardless of experimental conditions. Morphological analysis using TEM revealed filamentous and icosahedral virus-like particles associated with Symbiodinium cultures. We present genomic data of the virus assemblages isolated from cultured Symbiodinium cells that indicate this dinoflagellate is targeted by both a dsDNA virus, related to members of the Nucleo-Cytoplasmic Large dsDNA Virus family (NCLDV), and a novel ssRNA virus related to the Orthoretrovirinae. Further investigations are underway to detect viruses in freshly isolated Symbiodinium from reef corals and to compare these with viruses observed in laboratory cultures of this symbiotic alga. We aim to develop molecular diagnostic probes to detect viruses in field samples to help monitor and assess the impact of viruses in coral bleaching and other climate change-related events, which have huge implications for the health of coral reefs to future global climate scenarios.

Genetic diversity and differentiation in reef-building Millepora species, as revealed by cross-species amplification of fifteen novel microsatellite loci.

PubMed

Dubé, Caroline E; Planes, Serge; Zhou, Yuxiang; Berteaux-Lecellier, Véronique; Boissin, Emilie

2017-01-01

Quantifying the genetic diversity in natural populations is crucial to address ecological and evolutionary questions. Despite recent advances in whole-genome sequencing, microsatellite markers have remained one of the most powerful tools for a myriad of population genetic approaches. Here, we used the 454 sequencing technique to develop microsatellite loci in the fire coral Millepora platyphylla , an important reef-builder of Indo-Pacific reefs . We tested the cross-species amplification of these loci in five other species of the genus Millepora and analysed its success in correlation with the genetic distances between species using mitochondrial 16S sequences. We succeeded in discovering fifteen microsatellite loci in our target species M. platyphylla, among which twelve were polymorphic with 2-13 alleles and a mean observed heterozygosity of 0.411. Cross-species amplification in the five other Millepora species revealed a high probability of amplification success (71%) and polymorphism (59%) of the loci. Our results show no evidence of decreased heterozygosity with increasing genetic distance. However, only one locus enabled measures of genetic diversity in the Caribbean species M. complanata due to high proportions of null alleles for most of the microsatellites. This result indicates that our novel markers may only be useful for the Indo-Pacific species of Millepora. Measures of genetic diversity revealed significant linkage disequilibrium, moderate levels of observed heterozygosity (0.323-0.496) and heterozygote deficiencies for the Indo-Pacific species. The accessibility to new polymorphic microsatellite markers for hydrozoan Millepora species creates new opportunities for future research on processes driving the complexity of their colonisation success on many Indo-Pacific reefs.

Genetic structure and signatures of selection in grey reef sharks (Carcharhinus amblyrhynchos).

PubMed

Momigliano, P; Harcourt, R; Robbins, W D; Jaiteh, V; Mahardika, G N; Sembiring, A; Stow, A

2017-09-01

With overfishing reducing the abundance of marine predators in multiple marine ecosystems, knowledge of genetic structure and local adaptation may provide valuable information to assist sustainable management. Despite recent technological advances, most studies on sharks have used small sets of neutral markers to describe their genetic structure. We used 5517 nuclear single-nucleotide polymorphisms (SNPs) and a mitochondrial DNA (mtDNA) gene to characterize patterns of genetic structure and detect signatures of selection in grey reef sharks (Carcharhinus amblyrhynchos). Using samples from Australia, Indonesia and oceanic reefs in the Indian Ocean, we established that large oceanic distances represent barriers to gene flow, whereas genetic differentiation on continental shelves follows an isolation by distance model. In Australia and Indonesia differentiation at nuclear SNPs was weak, with coral reefs acting as stepping stones maintaining connectivity across large distances. Differentiation of mtDNA was stronger, and more pronounced in females, suggesting sex-biased dispersal. Four independent tests identified a set of loci putatively under selection, indicating that grey reef sharks in eastern Australia are likely under different selective pressures to those in western Australia and Indonesia. Genetic distances averaged across all loci were uncorrelated with genetic distances calculated from outlier loci, supporting the conclusion that different processes underpin genetic divergence in these two data sets. This pattern of heterogeneous genomic differentiation, suggestive of local adaptation, has implications for the conservation of grey reef sharks; furthermore, it highlights that marine species showing little genetic differentiation at neutral loci may exhibit patterns of cryptic genetic structure driven by local selection.

Baseline data for evaluating development trajectory and provision of ecosystem services of created fringing oyster reefs in Vermilion Bay, Louisiana

USGS Publications Warehouse

La Peyre, Megan K.; Schwarting, Lindsay; Miller, Shea

2013-01-01

Understanding the time frame in which ecosystem services (that is, water quality maintenance, shoreline protection, habitat provision) are expected to be provided is important when restoration projects are being designed and implemented. Restoration of three-dimensional shell habitats in coastal Louisiana and elsewhere presents a valuable and potentially self-sustaining approach to providing shoreline protection, enhancing nekton habitat, and providing water quality maintenance. As with most restoration projects, the development of expected different ecosystem services often occurs over varying time frames, with some services provided immediately and others taking longer to develop. This project was designed initially to compare the provision and development of ecosystem services by created fringing shoreline reefs in subtidal and intertidal environments in Vermilion Bay, Louisiana. Specifically, the goal was to test the null hypothesis that over time, the oyster recruitment and development of a sustainable oyster reef community would be similar at both intertidal and subtidal reef bases, and these sustainable reefs would in time provide similar shoreline stabilization, nekton habitat, and water quality services over similar time frames. Because the ecosystem services hypothesized to be provided by oyster reefs reflect long-term processes, fully testing the above-stated null hypothesis requires a longer-time frame than this project allowed. As such, this project was designed to provide the initial data on reef development and provision of ecosystem services, to identify services that may develop immediately, and to provide baseline data to allow for longer-term follow up studies tracking reef development over time. Unfortunately, these initially created reef bases (subtidal, intertidal) were not constructed as planned because of the Deepwater Horizon oil spill in April 2010, which resulted in reef duplicates being created 6 months apart. Further confounding the project were additional construction and restoration projects along the same shorelines which occurred between 2011 and June 2012. Because of constant activity near and around the reefs and continuing construction, development trajectories could not be compared among reef types at this time. This report presents the data collected at the sites over 3 years (2010–2012), describing only conditions and trends. In addition, these data provide an extensive and detailed dataset documenting initial conditions and initial ecosystem changes which will prove valuable in future data collection and analyses of reef development at this site. Data collection characterized the local water quality conditions (salinity, temperature, total suspended sediments, dissolved oxygen, chlorophyll a), adjacent marsh vegetation, soils, and shoreline position along the project shoreline at Vermilion Bay. During the study, marsh vegetation and soil characteristics were similar across the study area and did not change over time. Shoreline movement indicated shoreline loss at all sites, which varied by reefs. Water quality conditions followed expected seasonal patterns for this region, and no significant nonseasonal changes were measured throughout the study period. Despite oyster recruitment in fall 2010 and 2011, few if any oysters survived from the 2010 year class to 2012. At the last sampling of this project, some oysters recruited in fall 2011 survived through 2012, resulting in an on-reef density of 18.3 ± 2.1 individuals per square meter (mean size: 85.6 ± 2.2 millimeters). Because project goals were to compare reef development and provision of ecosystem services over time, as well as many of the processes identified for monitoring reflect long-term processes, results and data are presented only qualitatively, and trends or observations should be interpreted cautiously at this point. Measurable system responses to reef establishment require more time than was available for this study. These data provide a valuable baseline that can be ultimately used to help inform site selections for future restoration projects as well to further investigate the development trajectories of ecosystem provision of created reefs in this region.

Suitability of oyster restoration sites along the Louisiana coast: Examining site and stock × site interaction

USGS Publications Warehouse

Schwarting Miller, Lindsay; La Peyre, Jerome F.; LaPeyre, Megan K.

2017-01-01

Recognition of the global loss of subtidal oyster reefs has led to a rise in reef restoration efforts, including in the Gulf of Mexico. Created reef success depends entirely on selecting a location that supports long-term oyster growth and survival, including the recruitment and survival of on-reef oysters. Significant changes in estuarine salinity through management of freshwater inflows and through changed precipitation patterns may significantly impact the locations of optimal oyster restoration sites. These rapid shifts in conditions necessitate a need to better understand both impacts to on-reef oyster growth and population development, and variation in oyster stock performance. Oyster growth, mortality, condition, and disease prevalence were examined in three different stocks of oysters located in protected cages, as well as oyster recruitment and mortality on experimental reef units in three different locations representing a salinity gradient, along the Louisiana Gulf coast in 2011 and 2012. Over a 2-y period, the high-salinity site had highest oyster growth rate in protected cages but demonstrated the least likelihood for reef development based on on-reef oyster population failure, likely because of predation-related mortality (high recruitment and 100% mortality). In contrast, the midsalinity site with moderate oyster growth and on-reef recruitment and low mortality demonstrated a higher likelihood for reef development. The lowest salinity site exhibited extreme variability in all oyster responses between years because of extreme variation in environmental conditions during the study, indicating a low likelihood of long-term reef development. Whereas limited differences in stock performance between sites were found, the range of site environmental conditions tested was ultimately much lower than expected and may not have provided a wide enough range of conditions. In areas with limited, low recruitment, or rapidly changing environmental conditions, seeding with stocks selected for best growth and survival under expected future environmental conditions could better ensure reef development by using oyster populations best suited to the predicted conditions. With rapidly changing estuarine conditions from anthropogenic activities and climate change, siting of oyster reef restoration incorporating both oyster population dynamics and in situ biotic and abiotic interactions is critical in better directing site selection for reef restoration efforts.

REEF: Retainable Evaluator Execution Framework

PubMed Central

Weimer, Markus; Chen, Yingda; Chun, Byung-Gon; Condie, Tyson; Curino, Carlo; Douglas, Chris; Lee, Yunseong; Majestro, Tony; Malkhi, Dahlia; Matusevych, Sergiy; Myers, Brandon; Narayanamurthy, Shravan; Ramakrishnan, Raghu; Rao, Sriram; Sears, Russell; Sezgin, Beysim; Wang, Julia

2015-01-01

Resource Managers like Apache YARN have emerged as a critical layer in the cloud computing system stack, but the developer abstractions for leasing cluster resources and instantiating application logic are very low-level. This flexibility comes at a high cost in terms of developer effort, as each application must repeatedly tackle the same challenges (e.g., fault-tolerance, task scheduling and coordination) and re-implement common mechanisms (e.g., caching, bulk-data transfers). This paper presents REEF, a development framework that provides a control-plane for scheduling and coordinating task-level (data-plane) work on cluster resources obtained from a Resource Manager. REEF provides mechanisms that facilitate resource re-use for data caching, and state management abstractions that greatly ease the development of elastic data processing work-flows on cloud platforms that support a Resource Manager service. REEF is being used to develop several commercial offerings such as the Azure Stream Analytics service. Furthermore, we demonstrate REEF development of a distributed shell application, a machine learning algorithm, and a port of the CORFU [4] system. REEF is also currently an Apache Incubator project that has attracted contributors from several instititutions.1 PMID:26819493

Quaternary onset and evolution of Kimberley coral reefs (Northwest Australia) revealed by high-resolution seismic imaging

NASA Astrophysics Data System (ADS)

Bufarale, Giada; Collins, Lindsay B.; O'Leary, Michael J.; Stevens, Alexandra; Kordi, Moataz; Solihuddin, Tubagus

2016-07-01

The inner shelf Kimberley Bioregion of Northwest Australia is characterised by a macrotidal setting where prolific coral reefs growth as developed around a complex drowned landscape and is considered a biodiversity "hotspot". High-resolution shallow seismic studies were conducted across various reef settings in the Kimberley (Buccaneer Archipelago, north of Dampier Peninsula, latitude: between 16°40‧S and 16°00‧S) to evaluate stratigraphic evolution, interaction with different substrates, morphological patterns and distribution. Reef sites were chosen to assess most of the reef types present, particularly high intertidal planar reefs and fringing reefs. Reef internal acoustic reflectors were identified according to their shape, stratigraphic position and characteristics. Two main seismic horizons were identified marking the boundaries between Holocene reef (Marine Isotope Stage 1, MIS 1, last 12 ky), commonly 10-20 m thick, and MIS 5 (Last Interglacial, LIG, ~120 ky, up to 12 m thick) and Proterozoic rock foundation over which Quaternary reef growth occurred. Within the Holocene Reef unit, at least three minor internal reflectors, generally discontinuous, subparallel to the reef flat were recognised and interpreted as either growth hiatuses or a change of the coral framework or sediment matrix. The LIG reefs represent a new northernmost occurrence along the Western Australian coast. The research presented here achieved the first regional geophysical study of the Kimberley reefs. Subbottom profiles demonstrated that the surveyed reefs are characterised by a multi-stage reef buildup, indicating that coral growth occurred in the Kimberley during previous sea level highstands. The data show also that antecedent substrate and regional subsidence have contributed, too, in determining the amount of accommodation available for reef growth and controlling the morphology of the successive reef building stages. Moreover, the study showed that in spite of macrotidal conditions, high-turbidity and frequent high-energy cyclonic events, corals have exhibited prolific reef growth during the Holocene developing significant reef accretionary structures. As a result coral reefs have generating habitat complexity and species diversity in what is a biodiversity hotspot.

Crustose coralline algae increased framework and diversity on ancient coral reefs.

PubMed

Weiss, Anna; Martindale, Rowan C

2017-01-01

Crustose coralline algae (CCA) are key producers of carbonate sediment on reefs today. Despite their importance in modern reef ecosystems, the long-term relationship of CCA with reef development has not been quantitatively assessed in the fossil record. This study includes data from 128 Cenozoic coral reefs collected from the Paleobiology Database, the Paleoreefs Database, as well as the original literature and assesses the correlation of CCA abundance with taxonomic diversity (both corals and reef dwellers) and framework of fossil coral reefs. Chi-squared tests show reef type is significantly correlated with CCA abundance and post-hoc tests indicate higher involvement of CCA is associated with stronger reef structure. Additionally, general linear models show coral reefs with higher amounts of CCA had a higher diversity of reef-dwelling organisms. These data have important implications for paleoecology as they demonstrate that CCA increased building capacity, structural integrity, and diversity of ancient coral reefs. The analyses presented here demonstrate that the function of CCA on modern coral reefs is similar to their function on Cenozoic reefs; thus, studies of ancient coral reef collapse are even more meaningful as modern analogues.

Coral calcification and reef development under natural disturbances

NASA Astrophysics Data System (ADS)

Wall, M.; Schmidt, G. M.; Khokkiatiwong, S.; Richter, C.

2012-04-01

Corals are impressive ecosystem engineers shaping and influencing tropical shallow water environments through their complex carbonate framework. Calcification a key physiological process determining coral growth and reef development, is highly dependent on constant environmental conditions, especially temperature, aragonite saturation and pH. However, not in all reef areas such constant and stable conditons can be found. Coral reefs located in the Andaman Sea off the western Thai coast are subjected to large amplitude internal waves (LAIW), which induce strong oscillations in several physical and chemical environmental parameters and hence, offer the possibility to study the influence of fluctuating conditions on coral reefs. Characteristics of these oscillations as well as reef framework development have been studied on reefs of five islands, which are exposed to LAIW along their western sides and LAIW-sheltered on their eastern sides. LAIW reach these shallow water reef areas all year round, however, strongest fluctuations were recorded during the dry season (November to May) with temperature drops of up to 8°C and pH values ranging from 8.22-7.90. Several (up to 12) sudden changes in environmental conditions can occur during a day, which differ in intensity and duration. Salinity, pH and oxygen are well correlated with changes in temperature and thus, temperature variability calculated as degree days cooling (DDC) was used as proxy for the complex set of environmental variability. This proxy enabled us to combine frequency and intensity of disturbances in one value and allowed for ranking each study location according to the severity of LAIW disturbances. Framework height was found to be clearly reduced in areas exposed to LAIW compared to the complex three-dimensional carbonate framework in the LAIW-sheltered reefs. Moreover, it showed a strong linear correlation with DDC (Rsqr=0.732, p=0.007) indicating the negative effect of pulsed disturbances on coral reef development. LAIW are a ubiquitous phenomenon especially in tropical oceans where coral communities exposed to these internal waves may offer a unique possibility to study in situ the effect of several cumulative stressors on coral- and reef development, as well as the consequences for the whole reef community.

The continuing decline of coral reefs in Bahrain.

PubMed

Burt, John A; Al-Khalifa, Khalifa; Khalaf, Ebtesam; Alshuwaikh, Bassem; Abdulwahab, Ahmed

2013-07-30

Historically coral reefs of Bahrain were among the most extensive in the southern basin of the Arabian Gulf. However, Bahrain's reefs have undergone significant decline in the last four decades as a result of large-scale coastal development and elevated sea surface temperature events. Here we quantitatively surveyed six sites including most major coral reef habitats around Bahrain and a reef located 72 km offshore. Fleshy and turf algae now dominate Bahrain's reefs (mean: 72% cover), and live coral cover is low (mean: 5.1%). Formerly dominant Acropora were not observed at any site. The offshore Bulthama reef had the highest coral cover (16.3%) and species richness (22 of the 23 species observed, 13 of which were exclusive to this site). All reefs for which recent and historical data are available show continued degradation, and it is unlikely that they will recover under continuing coastal development and projected climate change impacts. Copyright © 2012 Elsevier Ltd. All rights reserved.

Novel tradable instruments in the conservation of coral reefs, based on the coral gardening concept for reef restoration.

PubMed

Rinkevich, Baruch

2015-10-01

Nearly all coral reefs bordering nations have experienced net losses in reef biodiversity, goods and services, even without considering the ever-developing global change impacts. In response, this overview wishes to reveal through prospects of active reef-restoration, the currently non-marketed or poorly marketed reef services, focusing on a single coral species (Stylophora pistillata). It is implied that the integration of equity capitals and other commodification with reef-restoration practices will improve total reef services. Two tiers of market-related activities are defined, the traditional first-tier instruments (valuating costs/gains for extracting tradable goods and services) and novel second-tier instruments (new/expanded monetary tools developed as by-products of reef restoration measures). The emerging new suite of economic mechanisms based on restoration methodologies could be served as an incentive for ecosystem conservation, enhancing the sum values of all services generated by coral reefs, where the same stocks of farmed/transplanted coral colonies will be used as market instruments. I found that active restoration measures disclose 12 classes of second-tier goods and services, which may partly/wholly finance restoration acts, bringing to light reef capitalizations that allow the expansion of markets with products that have not been considered before. The degree to which the second tier of market-related services could buffer coral-reef degradation is still unclear and would vary with different reef types and in various reef restoration scenarios; however, reducing the uncertainty associated with restoration. It is expected that the expansion of markets with the new products and the enhancement of those already existing will be materialized even if reef ecosystems will recover into different statuses. Copyright © 2015 Elsevier Ltd. All rights reserved.

Developing a multi-stressor gradient for coral reefs | Science ...

EPA Pesticide Factsheets

Coral reefs are often found near coastal waters where multiple anthropogenic stressors co-occur at areas of human disturbance. Developing coral reef biocriteria under the U.S. Clean Water Act requires relationships between anthropogenic stressors and coral reef condition to be established. Developing stressor gradients presents challenges including: stressors which co-occur but operate at different or unknown spatial and temporal scales, inconsistent data availability measuring stressor levels, and unknown effects on exposed reef biota. We are developing a generalized stressor model using Puerto Rico as case study location, to represent the cumulative spatial/temporal co-occurrence of multiple anthropogenic stressors. Our approach builds on multi-stressor research in streams and rivers, and focuses on three high-priority stressors identified by coral reef experts: land-based sources of pollution (LBSP), global climate change (GCC) related temperature anomalies, and fishing pressure. Landscape development intensity index, based on land use/land cover data, estimates human impact in watersheds adjacent to coral reefs and is proxy for LBSP. NOAA’s retrospective daily thermal anomaly data is used to determine GCC thermal anomalies. Fishing pressure is modeled using gear-specific and fishery landings data. Stressor data was adjusted to a common scale or weighted for relative importance, buffered to account for diminished impact further from source, and compared wit

Development and implementation of coral reef biocriteria in U.S. jurisdictions.

PubMed

Bradley, Patricia; Fisher, William S; Bell, Heidi; Davis, Wayne; Chan, Valerie; LoBue, Charles; Wiltse, Wendy

2009-03-01

Coral reefs worldwide are declining at an alarming rate and are under continuous threat from both natural and anthropogenic environmental stressors. Warmer sea temperatures attributed to global climate change and numerous human activities at local scales place these valuable ecosystems at risk. Reefs provide numerous services, including shoreline protection, fishing, tourism and biological diversity, which are lost through physical damage, overfishing, and pollution. Pollution can be controlled under provisions of the Clean Water Act, but these options have not been fully employed to protect coral reefs. No U.S. jurisdiction has implemented coral reef biocriteria, which are narrative or quantitative water quality standards based on the condition of a biological resource or assemblage. The President's Ocean Action Plan directs the U.S. Environmental Protection Agency (EPA) to develop biological assessment methods and biological criteria for evaluating and maintaining the health of coral reef ecosystems. EPA has formed the Coral Reef Biocriteria Working Group (CRBWG) to foster development of coral reef biocriteria through focused research, evaluation and communication among Agency partners and U.S. jurisdictions. Ongoing CRBWG activities include development and evaluation of a rapid bioassessment protocol for application in biocriteria programs; development of a survey design and monitoring strategy for the U.S. Virgin Islands; comprehensive reviews of biocriteria approaches proposed by states and territories; and assembly of data from a variety of monitoring programs for additional metrics. Guidance documents are being prepared to assist U.S. jurisdictions in reaching protective and defensible biocriteria.

Testing new approaches to carbonate system simulation at the reef scale: the ReefSam model first results, application to a question in reef morphology and future challenges.

NASA Astrophysics Data System (ADS)

Barrett, Samuel; Webster, Jody

2016-04-01

Numerical simulation of the stratigraphy and sedimentology of carbonate systems (carbonate forward stratigraphic modelling - CFSM) provides significant insight into the understanding of both the physical nature of these systems and the processes which control their development. It also provides the opportunity to quantitatively test conceptual models concerning stratigraphy, sedimentology or geomorphology, and allows us to extend our knowledge either spatially (e.g. between bore holes) or temporally (forwards or backwards in time). The later is especially important in determining the likely future development of carbonate systems, particularly regarding the effects of climate change. This application, by its nature, requires successful simulation of carbonate systems on short time scales and at high spatial resolutions. Previous modelling attempts have typically focused on the scales of kilometers and kilo-years or greater (the scale of entire carbonate platforms), rather than at the scale of centuries or decades, and tens to hundreds of meters (the scale of individual reefs). Previous work has identified limitations in common approaches to simulating important reef processes. We present a new CFSM, Reef Sedimentary Accretion Model (ReefSAM), which is designed to test new approaches to simulating reef-scale processes, with the aim of being able to better simulate the past and future development of coral reefs. Four major features have been tested: 1. A simulation of wave based hydrodynamic energy with multiple simultaneous directions and intensities including wave refraction, interaction, and lateral sheltering. 2. Sediment transport simulated as sediment being moved from cell to cell in an iterative fashion until complete deposition. 3. A coral growth model including consideration of local wave energy and composition of the basement substrate (as well as depth). 4. A highly quantitative model testing approach where dozens of output parameters describing the reef morphology and development are compared with observational data. Despite being a test-bed and work in progress, ReefSAM was able to simulate the Holocene development of One Tree Reef in the Southern Great Barrier Reef (Australia) and was able to improve upon previous modelling attempts in terms of both quantitative measures and qualitative outputs, such as the presence of previously un-simulated reef features. Given the success of the model in simulating the Holocene development of OTR, we used it to quantitatively explore the effect of basement substrate depth and morphology on reef maturity/lagoonal filling (as discussed by Purdy and Gischer 2005). Initial results show a number of non-linear relationships between basement substrate depth, lagoonal filling and volume of sand produced on the reef rims and deposited in the lagoon. Lastly, further testing of the model has revealed new challenges which are likely to manifest in any attempt at reef-scale simulation. Subtly different sets of energy direction and magnitude input parameters (different in each time step but with identical probability distributions across the entire model run) resulted in a wide range of quantitative model outputs. Time step length is a likely contributing factor and the results of further testing to address this challenge will be presented.

Evidence of extensive reef development and high coral cover in nearshore environments: implications for understanding coral adaptation in turbid settings

PubMed Central

Morgan, Kyle M.; Perry, Chris T.; Smithers, Scott G.; Johnson, Jamie A.; Daniell, James J.

2016-01-01

Mean coral cover has reportedly declined by over 15% during the last 30 years across the central Great Barrier Reef (GBR). Here, we present new data that documents widespread reef development within the more poorly studied turbid nearshore areas (<10 m depth), and show that coral cover on these reefs averages 38% (twice that reported on mid- and outer-shelf reefs). Of the surveyed seafloor area, 11% had distinct reef or coral community cover. Although the survey area represents a small subset of the nearshore zone (15.5 km2), this reef density is comparable to that measured across the wider GBR shelf (9%). We also show that cross-shelf coral cover declines with distance from the coast (R2 = 0.596). Identified coral taxa (21 genera) exhibited clear depth-stratification, corresponding closely to light attenuation and seafloor topography, with reefal development restricted to submarine antecedent bedforms. Data from this first assessment of nearshore reef occurrence and ecology measured across meaningful spatial scales suggests that these coral communities may exhibit an unexpected capacity to tolerate documented declines in water quality. Indeed, these shallow-water nearshore reefs may share many characteristics with their deep-water (>30 m) mesophotic equivalents and may have similar potential as refugia from large-scale disturbances. PMID:27432782

Evidence of extensive reef development and high coral cover in nearshore environments: implications for understanding coral adaptation in turbid settings.

PubMed

Morgan, Kyle M; Perry, Chris T; Smithers, Scott G; Johnson, Jamie A; Daniell, James J

2016-07-19

Mean coral cover has reportedly declined by over 15% during the last 30 years across the central Great Barrier Reef (GBR). Here, we present new data that documents widespread reef development within the more poorly studied turbid nearshore areas (<10 m depth), and show that coral cover on these reefs averages 38% (twice that reported on mid- and outer-shelf reefs). Of the surveyed seafloor area, 11% had distinct reef or coral community cover. Although the survey area represents a small subset of the nearshore zone (15.5 km(2)), this reef density is comparable to that measured across the wider GBR shelf (9%). We also show that cross-shelf coral cover declines with distance from the coast (R(2) = 0.596). Identified coral taxa (21 genera) exhibited clear depth-stratification, corresponding closely to light attenuation and seafloor topography, with reefal development restricted to submarine antecedent bedforms. Data from this first assessment of nearshore reef occurrence and ecology measured across meaningful spatial scales suggests that these coral communities may exhibit an unexpected capacity to tolerate documented declines in water quality. Indeed, these shallow-water nearshore reefs may share many characteristics with their deep-water (>30 m) mesophotic equivalents and may have similar potential as refugia from large-scale disturbances.

Developing the Biological Condition Gradient (BCG), as a Tool for Describing the Condition of US Coral Reefs

EPA Science Inventory

Understanding effects of human activity on coral reefs requires knowing what characteristics constitute a high quality coral reef and identifying measurable criteria. The BCG is a conceptual model that describes how biological attributes of coral reefs change along a gradient of ...

Lower permian reef-bank bodies’ characterization in the pre-caspian basin

NASA Astrophysics Data System (ADS)

Wang, Zhen; Wang, Yankun; Yin, Jiquan; Luo, Man; Liang, Shuang

2018-02-01

Reef-bank reservoir is one of the targets for exploration of marine carbonate rocks in the Pre-Caspian Basin. Within this basin, the reef-bank bodies were primarily developed in the subsalt Devonian-Lower Permian formations, and are dominated by carbonate platform interior and margin reef-banks. The Lower Permian reef-bank present in the eastern part of the basin is considered prospective. This article provides a sequence and sedimentary facies study utilizing drilling and other data, as well as an analysis and identification of the Lower Permian reef-bank features along the eastern margin of the Pre-Caspian Basin using sub-volume coherence and seismic inversion techniques. The results indicate that the sub-volume coherence technique gives a better reflection of lateral distribution of reefs, and the seismic inversion impedance enables the identification of reef bodies’ development phases in the vertical direction, since AI (impedance) is petrophysically considered a tool for distinguishing the reef limestone and the clastic rocks within the formation (limestone exhibits a relatively high impedance than clastic rock). With this method, the existence of multiple phases of the Lower Permian reef-bank bodies along the eastern margin of the Pre-Caspian Basin has been confirmed. These reef-bank bodies are considered good subsalt exploration targets due to their lateral connectivity from south to north, large distribution range and large scale.

Pattern and intensity of human impact on coral reefs depend on depth along the reef profile and on the descriptor adopted

NASA Astrophysics Data System (ADS)

Nepote, Ettore; Bianchi, Carlo Nike; Chiantore, Mariachiara; Morri, Carla; Montefalcone, Monica

2016-09-01

Coral reefs are threatened by multiple global and local disturbances. The Maldives, already heavily hit by the 1998 mass bleaching event, are currently affected also by growing tourism and coastal development that may add to global impacts. Most of the studies investigating effects of local disturbances on coral reefs assessed the response of communities along a horizontal distance from the impact source. This study investigated the status of a Maldivian coral reef around an island where an international touristic airport has been recently (2009-2011) built, at different depths along the reef profile (5-20 m depth) and considering the change in the percentage of cover of five different non-taxonomic descriptors assessed through underwater visual surveys: hard corals, soft corals, other invertebrates, macroalgae and abiotic attributes. Eight reefs in areas not affected by any coastal development were used as controls and showed a reduction of hard coral cover and an increase of abiotic attributes (i.e. sand, rock, coral rubble) at the impacted reef. However, hard coral cover, the most widely used descriptor of coral reef health, was not sufficient on its own to detect subtle indirect effects that occurred down the reef profile. Selecting an array of descriptors and considering different depths, where corals may find a refuge from climate impacts, could guide the efforts of minimising local human pressures on coral reefs.

Geomorphology and sediment transport on a submerged back-reef sand apron: One Tree Reef, Great Barrier Reef

NASA Astrophysics Data System (ADS)

Harris, Daniel L.; Vila-Concejo, Ana; Webster, Jody M.

2014-10-01

Back-reef sand aprons are conspicuous and dynamic sedimentary features in coral reef systems. The development of these features influences the evolution and defines the maturity of coral reefs. However, the hydrodynamic processes that drive changes on sand aprons are poorly understood with only a few studies directly assessing sediment entrainment and transport. Current and wave conditions on a back-reef sand apron were measured during this study and a digital elevation model was developed through topographic and bathymetric surveying of the sand apron, reef flats and lagoon. The current and wave processes that may entrain and transport sediment were assessed using second order small amplitude (Stokes) wave theory and Shields equations. The morphodynamic interactions between current flow and geomorphology were also examined. The results showed that sediment transport occurs under modal hydrodynamic conditions with waves the main force entraining sediment rather than average currents. A morphodynamic relationship between current flow and geomorphology was also observed with current flow primarily towards the lagoon in shallow areas of the sand apron and deeper channel-like areas directing current off the sand apron towards the lagoon or the reef crest. These results show that the short-term mutual interaction of hydrodynamics and geomorphology in coral reefs can result in morphodynamic equilibrium.

The ploys of sex: relationships among the mode of reproduction, body size and habitats of coral-reef brittlestars

NASA Astrophysics Data System (ADS)

Hendler, Gordon; Littman, Barbara S.

1986-08-01

Observations were made of 33 species of brittlestars (3980 specimens) from specific substrata collected in four zones on the Belize Barrier Reef, Caribbean Sea. The body size of most species of brittlestars with planktonic larvae differs significantly among different substrata. Generally, individuals from the calcareous alga Halimeda opuntia are smallest, those found in corals ( Porites porites, Madracis mirabilis, and Agaricia tenuifolia) are larger, and those from coral rubble are the largest. This suggests that brittlestars with planktonic larvae move to new microhabitats as they grow. In contrast, most brooding and fissiparous species are relatively small and their size-distributions are similar among all substrata. Halimeda harbours denser concentrations of brittlestars and more small and juvenile individuals than the other substrata. Juveniles of the brooding and fissiparous species are most common in Halimeda on the Back Reef whereas juveniles developing from planktonic larvae are most common in Halimeda patches in deeper water. Fissiparity and brooding may be means for individuals (genomes) of small, apomictic species to reach large size (and correspondingly high fecundities) in patchy microhabitats that select for small body sizes. Small brittlestar species and juveniles are most numerous in the microhabitats called refuge-substrata, such as Halimeda, which may repel predators and reduce environmental stress. Whether young brittlestars are concentrated in refuge-substrata through settlement behavior, migration, or differential survival remains unknown. Experiments revealed that coral polyps kill small brittlestars, perhaps accounting for the rarity of small and juvenile brittlestars in coral substrata.

The effectiveness of coral reefs for coastal hazard risk reduction and adaptation

PubMed Central

Ferrario, Filippo; Beck, Michael W.; Storlazzi, Curt D.; Micheli, Fiorenza; Shepard, Christine C.; Airoldi, Laura

2014-01-01

The world’s coastal zones are experiencing rapid development and an increase in storms and flooding. These hazards put coastal communities at heightened risk, which may increase with habitat loss. Here we analyse globally the role and cost effectiveness of coral reefs in risk reduction. Meta-analyses reveal that coral reefs provide substantial protection against natural hazards by reducing wave energy by an average of 97%. Reef crests alone dissipate most of this energy (86%). There are 100 million or more people who may receive risk reduction benefits from reefs or bear hazard mitigation and adaptation costs if reefs are degraded. We show that coral reefs can provide comparable wave attenuation benefits to artificial defences such as breakwaters, and reef defences can be enhanced cost effectively. Reefs face growing threats yet there is opportunity to guide adaptation and hazard mitigation investments towards reef restoration to strengthen this first line of coastal defence. PMID:24825660

The effectiveness of coral reefs for coastal hazard risk reduction and adaptation.

PubMed

Ferrario, Filippo; Beck, Michael W; Storlazzi, Curt D; Micheli, Fiorenza; Shepard, Christine C; Airoldi, Laura

2014-05-13

The world's coastal zones are experiencing rapid development and an increase in storms and flooding. These hazards put coastal communities at heightened risk, which may increase with habitat loss. Here we analyse globally the role and cost effectiveness of coral reefs in risk reduction. Meta-analyses reveal that coral reefs provide substantial protection against natural hazards by reducing wave energy by an average of 97%. Reef crests alone dissipate most of this energy (86%). There are 100 million or more people who may receive risk reduction benefits from reefs or bear hazard mitigation and adaptation costs if reefs are degraded. We show that coral reefs can provide comparable wave attenuation benefits to artificial defences such as breakwaters, and reef defences can be enhanced cost effectively. Reefs face growing threats yet there is opportunity to guide adaptation and hazard mitigation investments towards reef restoration to strengthen this first line of coastal defence.

The effectiveness of coral reefs for coastal hazard risk reduction and adaptation

USGS Publications Warehouse

Ferrario, Filippo; Beck, Michael W.; Storlazzi, Curt D.; Micheli, Fiorenza; Shepard, Christine C.; Airoldi, Laura

2014-01-01

The world’s coastal zones are experiencing rapid development and an increase in storms and flooding. These hazards put coastal communities at heightened risk, which may increase with habitat loss. Here we analyse globally the role and cost effectiveness of coral reefs in risk reduction. Meta-analyses reveal that coral reefs provide substantial protection against natural hazards by reducing wave energy by an average of 97%. Reef crests alone dissipate most of this energy (86%). There are 100 million or more people who may receive risk reduction benefits from reefs or bear hazard mitigation and adaptation costs if reefs are degraded. We show that coral reefs can provide comparable wave attenuation benefits to artificial defences such as breakwaters, and reef defences can be enhanced cost effectively. Reefs face growing threats yet there is opportunity to guide adaptation and hazard mitigation investments towards reef restoration to strengthen this first line of coastal defence.

Five-year evaluation of habitat remediation in Thunder Bay, Lake Huron: Comparison of constructed reef characteristics that attract spawning lake trout

USGS Publications Warehouse

Marsden, J. Ellen; Binder, Thomas R.; Johnson, James; He, Ji; Dingledine, Natalie; Adams, Janice; Johnson, Nicholas S.; Buchinger, Tyler J.; Krueger, Charles C.

2016-01-01

Degradation of aquatic habitats has motivated construction and research on the use of artificial reefs to enhance production of fish populations. However, reefs are often poorly planned, reef design characteristics are not evaluated, and reef assessments are short-term. We constructed 29 reefs in Thunder Bay, Lake Huron, in 2010 and 2011 to mitigate for degradation of a putative lake trout spawning reef. Reefs were designed to evaluate lake trout preferences for height, orientation, and size, and were compared with two degraded natural reefs and a high-quality natural reef (East Reef). Eggs and fry were sampled on each reef for five years post-construction, and movements of 40 tagged lake trout were tracked during three spawning seasons using acoustic telemetry. Numbers of adults and spawning on the constructed reefs were initially low, but increased significantly over the five years, while remaining consistent on East Reef. Adult density, egg deposition, and fry catch were not related to reef height or orientation of the constructed reefs, but were related to reef size and adjacency to East Reef. Adult lake trout visited and spawned on all except the smallest constructed reefs. Of the metrics used to evaluate the reefs, acoustic telemetry produced the most valuable and consistent data, including fine-scale examination of lake trout movements relative to individual reefs. Telemetry data, supplemented with diver observations, identified several previously unknown natural spawning sites, including the high-use portions of East Reef. Reef construction has increased the capacity for fry production in Thunder Bay without apparently decreasing the use of the natural reef. Results of this project emphasize the importance of multi-year reef assessment, use of multiple assessment methods, and comparison of reef characteristics when developing artificial reef projects. Specific guidelines for construction of reefs focused on enhancing lake trout spawning are suggested.

Holocene reef growth over irregular Pleistocene karst confirms major influence of hydrodynamic factors on Holocene reef development

NASA Astrophysics Data System (ADS)

Salas-Saavedra, Marcos; Dechnik, Belinda; Webb, Gregory E.; Webster, Jody M.; Zhao, Jian-xin; Nothdurft, Luke D.; Clark, Tara R.; Graham, Trevor; Duce, Stephanie

2018-01-01

Many factors govern reef growth through time, but their relative contributions are commonly poorly known. A prime example is the degree to which modern reef morphology is controlled by contemporary hydrodynamic settings or antecedent topography. Fortunately, reefs record essential information for interpreting palaeoclimate and palaeoenvironment within their structure as they accrete in response to environmental change. Five new cores recovered from the margin of Heron Reef, southern Great Barrier Reef (GBR), provide new insights into Holocene reef development and relationships between Holocene reefs and Pleistocene antecedent topography, suggesting much more irregular underlying topography than expected based on the configuration of the overlying modern reef margin. Cores were recovered to depths of 30 m and 94 new 230Th ages document growth between 8408 ± 24 and 2222 ± 16 yrs. BP. One core penetrated Pleistocene basement at ∼15.3 m with Holocene reef growth initiated by ∼8.4 ka BP. However, 1.83 km west along the same smooth margin, four cores failed to penetrate Pleistocene basement at depths between 20 and 30 m, suggesting that the margin at this location overlies a karst valley, or alternatively, the antecedent platform does not extend there. A 48 m-long margin-perpendicular transect of three cores documents the filling of this topographic low, at least 30 m beneath the current reef top, with seaward lateral accretion at a rate of 34.3 m/ka. Cores indicate steady vertical and lateral accretion between 3.2 and 1.8 ka BP with no evidence of the hiatus in reef flat progradation seen in most other offshore reefs of the GBR at that time. These cores suggest that the relative protection afforded by the valley allowed for unconsolidated sediment to accumulate, enabling continuous progradation even when other areas of the reef flat appear to have 'turned off'. Additionally, the cores suggest that although reefs in the southern GBR clearly owe their location to Pleistocene antecedent topography, modern reef morphology at sea level primarily reflects the interaction of Holocene reef communities with contemporary hydrodynamics.

Self-generated morphology in lagoon reefs

PubMed Central

Hamblin, Michael G.

2015-01-01

The three-dimensional form of a coral reef develops through interactions and feedbacks between its constituent organisms and their environment. Reef morphology therefore contains a potential wealth of ecological information, accessible if the relationships between morphology and ecology can be decoded. Traditionally, reef morphology has been attributed to external controls such as substrate topography or hydrodynamic influences. Little is known about inherent reef morphology in the absence of external control. Here we use reef growth simulations, based on observations in the cellular reefs of Western Australia’s Houtman Abrolhos Islands, to show that reef morphology is fundamentally determined by the mechanical behaviour of the reef-building organisms themselves—specifically their tendency to either remain in place or to collapse. Reef-building organisms that tend to remain in place, such as massive and encrusting corals or coralline algae, produce nodular reefs, whereas those that tend to collapse, such as branching Acropora, produce cellular reefs. The purest reef growth forms arise in sheltered lagoons dominated by a single type of reef builder, as in the branching Acropora-dominated lagoons of the Abrolhos. In these situations reef morphology can be considered a phenotype of the predominant reef building organism. The capacity to infer coral type from reef morphology can potentially be used to identify and map specific coral habitat in remotely sensed images. More generally, identifying ecological mechanisms underlying other examples of self-generated reef morphology can potentially improve our understanding of present-day reef ecology, because any ecological process capable of shaping a reef will almost invariably be an important process in real time on the living reef. PMID:26175962

Possible modes of coral-reef development at Molokai, Hawaii, inferred from seismic-reflection profiling

USGS Publications Warehouse

Barnhardt, W.A.; Richmond, B.M.; Grossman, E.E.; Hart, P.

2005-01-01

High-resolution, seismic-reflection data elucidate the late Quaternary development of the largest coral-reef complex in the main Hawaiian Islands. Six acoustic facies were identified from reflection characteristics and lithosome geometry. An extensive, buried platform with uniformly low relief was traced beneath fore-reef and marginal shelf environments. This highly reflective surface dips gently seaward to ???130 m depth and locally crops out on the seafloor. It probably represents a wave-cut platform or ancient reef flat. We propose alternative evolutionary models, in which sea-level changes have modulated the development of reef systems, to explain the observed stratigraphic relationships. The primary difference between the models is the origin of the underlying antecedent surface, which arguably could have formed during either regression/lowstand or subsequent transgression. 

Hurricanes, coral reefs and rainforests: resistance, ruin and recovery in the Caribbean

USGS Publications Warehouse

Lugo, Ariel E.; Rogers, Caroline S.; Nixon, Scott W.

2000-01-01

The coexistence of hurricanes, coral reefs, and rainforests in the Caribbean demonstrates that highly structured ecosystems with great diversity can flourish in spite of recurring exposure to intense destructive energy. Coral reefs develop in response to wave energy and resist hurricanes largely by virtue of their structural strength. Limited fetch also protects some reefs from fully developed hurricane waves. While storms may produce dramatic local reef damage, they appear to have little impact on the ability of coral reefs to provide food or habitat for fish and other animals. Rainforests experience an enormous increase in wind energy during hurricanes with dramatic structural changes in the vegetation. The resulting changes in forest microclimate are larger than those on reefs and the loss of fruit, leaves, cover, and microclimate has a great impact on animal populations. Recovery of many aspects of rainforest structure and function is rapid, though there may be long-term changes in species composition. While resistance and repair have maintained reefs and rainforests in the past, human impacts may threaten their ability to survive.

Retrograde accretion of a Caribbean fringing reef controlled by hurricanes and sea-level rise

NASA Astrophysics Data System (ADS)

Blanchon, Paul; Richards, Simon; Bernal, Juan Pablo; Cerdeira-Estrada, Sergio; Ibarra, M. Socrates; Corona-Martínez, Liliana; Martell-Dubois, Raúl

2017-10-01

Predicting the impact of sea-level (SL) rise on coral reefs requires reliable models of reef accretion. Most assume that accretion results from vertical growth of coralgal framework, but recent studies show that reefs exposed to hurricanes consist of layers of coral gravel rather than in-place corals. New models are therefore needed to account for hurricane impact on reef accretion over geological timescales. To investigate this geological impact, we report the configuration and development of a 4-km-long fringing reef at Punta Maroma along the northeast Yucatan Peninsula. Satellite-derived bathymetry shows the crest is set-back a uniform distance of 315 ±15 m from a mid-shelf slope break, and the reef-front decreases 50% in width and depth along its length. A 12-core drill transect constrained by multiple 230Th ages shows the reef is composed of an 2-m thick layer of coral clasts that has retrograded 100 m over its back-reef during the last 5.5 ka. These findings are consistent with a hurricane-control model of reef development where large waves trip and break over the mid-shelf slope break, triggering rapid energy dissipation and thus limiting how far upslope individual waves can fragment corals and redistribute clasts. As SL rises and water depth increases, energy dissipation during wave-breaking is reduced, extending the clast-transport limit, thus leading to reef retrogradation. This hurricane model may be applicable to a large sub-set of fringing reefs in the tropical Western-Atlantic necessitating a reappraisal of their accretion rates and response to future SL rise.

Draft genome of the lined seahorse, Hippocampus erectus.

PubMed

Lin, Qiang; Qiu, Ying; Gu, Ruobo; Xu, Meng; Li, Jia; Bian, Chao; Zhang, Huixian; Qin, Geng; Zhang, Yanhong; Luo, Wei; Chen, Jieming; You, Xinxin; Fan, Mingjun; Sun, Min; Xu, Pao; Venkatesh, Byrappa; Xu, Junming; Fu, Hongtuo; Shi, Qiong

2017-06-01

The lined seahorse, Hippocampus erectus , is an Atlantic species and mainly inhabits shallow sea beds or coral reefs. It has become very popular in China for its wide use in traditional Chinese medicine. In order to improve the aquaculture yield of this valuable fish species, we are trying to develop genomic resources for assistant selection in genetic breeding. Here, we provide whole genome sequencing, assembly, and gene annotation of the lined seahorse, which can enrich genome resource and further application for its molecular breeding. A total of 174.6 Gb (Gigabase) raw DNA sequences were generated by the Illumina Hiseq2500 platform. The final assembly of the lined seahorse genome is around 458 Mb, representing 94% of the estimated genome size (489 Mb by k-mer analysis). The contig N50 and scaffold N50 reached 14.57 kb and 1.97 Mb, respectively. Quality of the assembled genome was assessed by BUSCO with prediction of 85% of the known vertebrate genes and evaluated using the de novo assembled RNA-seq transcripts to prove a high mapping ratio (more than 99% transcripts could be mapped to the assembly). Using homology-based, de novo and transcriptome-based prediction methods, we predicted 20 788 protein-coding genes in the generated assembly, which is less than our previously reported gene number (23 458) of the tiger tail seahorse ( H. comes ). We report a draft genome of the lined seahorse. These generated genomic data are going to enrich genome resource of this economically important fish, and also provide insights into the genetic mechanisms of its iconic morphology and male pregnancy behavior. © The Authors 2017. Published by Oxford University Press.

Draft genome of the lined seahorse, Hippocampus erectus

PubMed Central

Lin, Qiang; Qiu, Ying; Gu, Ruobo; Xu, Meng; Li, Jia; Bian, Chao; Zhang, Huixian; Qin, Geng; Zhang, Yanhong; Luo, Wei; Chen, Jieming; You, Xinxin; Fan, Mingjun; Sun, Min; Xu, Pao; Venkatesh, Byrappa

2017-01-01

Abstract Background: The lined seahorse, Hippocampus erectus, is an Atlantic species and mainly inhabits shallow sea beds or coral reefs. It has become very popular in China for its wide use in traditional Chinese medicine. In order to improve the aquaculture yield of this valuable fish species, we are trying to develop genomic resources for assistant selection in genetic breeding. Here, we provide whole genome sequencing, assembly, and gene annotation of the lined seahorse, which can enrich genome resource and further application for its molecular breeding. Findings: A total of 174.6 Gb (Gigabase) raw DNA sequences were generated by the Illumina Hiseq2500 platform. The final assembly of the lined seahorse genome is around 458 Mb, representing 94% of the estimated genome size (489 Mb by k-mer analysis). The contig N50 and scaffold N50 reached 14.57 kb and 1.97 Mb, respectively. Quality of the assembled genome was assessed by BUSCO with prediction of 85% of the known vertebrate genes and evaluated using the de novo assembled RNA-seq transcripts to prove a high mapping ratio (more than 99% transcripts could be mapped to the assembly). Using homology-based, de novo and transcriptome-based prediction methods, we predicted 20 788 protein-coding genes in the generated assembly, which is less than our previously reported gene number (23 458) of the tiger tail seahorse (H. comes). Conclusion: We report a draft genome of the lined seahorse. These generated genomic data are going to enrich genome resource of this economically important fish, and also provide insights into the genetic mechanisms of its iconic morphology and male pregnancy behavior. PMID:28444302

Millennial-scale ocean acidification and late Quaternary decline of cryptic bacterial crusts in tropical reefs.

PubMed

Riding, R; Liang, L; Braga, J C

2014-09-01

Ocean acidification by atmospheric carbon dioxide has increased almost continuously since the last glacial maximum (LGM), 21,000 years ago. It is expected to impair tropical reef development, but effects on reefs at the present day and in the recent past have proved difficult to evaluate. We present evidence that acidification has already significantly reduced the formation of calcified bacterial crusts in tropical reefs. Unlike major reef builders such as coralline algae and corals that more closely control their calcification, bacterial calcification is very sensitive to ambient changes in carbonate chemistry. Bacterial crusts in reef cavities have declined in thickness over the past 14,000 years with largest reduction occurring 12,000-10,000 years ago. We interpret this as an early effect of deglacial ocean acidification on reef calcification and infer that similar crusts were likely to have been thicker when seawater carbonate saturation was increased during earlier glacial intervals, and thinner during interglacials. These changes in crust thickness could have substantially affected reef development over glacial cycles, as rigid crusts significantly strengthen framework and their reduction would have increased the susceptibility of reefs to biological and physical erosion. Bacterial crust decline reveals previously unrecognized millennial-scale acidification effects on tropical reefs. This directs attention to the role of crusts in reef formation and the ability of bioinduced calcification to reflect changes in seawater chemistry. It also provides a long-term context for assessing anticipated anthropogenic effects. © 2014 John Wiley & Sons Ltd.

Exploring the hidden shallows: extensive reef development and resilience within the turbid nearshore Great Barrier Reef

NASA Astrophysics Data System (ADS)

Morgan, Kyle; Perry, Chris; Smithers, Scott; Johnson, Jamie; Daniell, James

2016-04-01

Mean coral cover on Australia's Great Barrier Reef (GBR) has reportedly declined by over 15% during the last 30 years. Climate change events and outbreaks of coral disease have been major drivers of degradation, often exacerbating the stresses caused by localised human activities (e.g. elevated sediment and nutrient inputs). Here, however, in the first assessment of nearshore reef occurrence and ecology across meaningful spatial scales (15.5 sq km), we show that areas of the GBR shelf have exhibited strong intra-regional variability in coral resilience to declining water quality. Specifically, within the highly-turbid "mesophotic" nearshore (<10 m depth) of the central GBR, where terrigenous seafloor sediments are persistently resuspended by wave processes, coral cover averages 38% (twice that reported on mid- and outer-shelf reefs). Of the mapped area, 11% of the seafloor has distinct reef or coral community cover, a density comparable to that measured across the entire GBR shelf (9%). Identified coral taxa (21 genera) exhibited clear depth-stratification corresponding closely to light attenuation and seafloor topography. Reefs have accreted relatively rapidly during the late-Holocene (1.8-3.0 mm y-1) with rates of vertical reef growth influenced by intrinsic shifts in coral assemblages associated with reef development. Indeed, these shallow-water reefs may have similar potential as refugia from large-scale disturbance as their deep-water (>30 m) "mesophotic" equivalents, and also provide a basis from which to model future trajectories of reef growth within nearshore areas.

KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome

PubMed Central

2013-01-01

Background Contemporary coral reef research has firmly established that a genomic approach is urgently needed to better understand the effects of anthropogenic environmental stress and global climate change on coral holobiont interactions. Here we present KEGG orthology-based annotation of the complete genome sequence of the scleractinian coral Acropora digitifera and provide the first comprehensive view of the genome of a reef-building coral by applying advanced bioinformatics. Description Sequences from the KEGG database of protein function were used to construct hidden Markov models. These models were used to search the predicted proteome of A. digitifera to establish complete genomic annotation. The annotated dataset is published in ZoophyteBase, an open access format with different options for searching the data. A particularly useful feature is the ability to use a Google-like search engine that links query words to protein attributes. We present features of the annotation that underpin the molecular structure of key processes of coral physiology that include (1) regulatory proteins of symbiosis, (2) planula and early developmental proteins, (3) neural messengers, receptors and sensory proteins, (4) calcification and Ca2+-signalling proteins, (5) plant-derived proteins, (6) proteins of nitrogen metabolism, (7) DNA repair proteins, (8) stress response proteins, (9) antioxidant and redox-protective proteins, (10) proteins of cellular apoptosis, (11) microbial symbioses and pathogenicity proteins, (12) proteins of viral pathogenicity, (13) toxins and venom, (14) proteins of the chemical defensome and (15) coral epigenetics. Conclusions We advocate that providing annotation in an open-access searchable database available to the public domain will give an unprecedented foundation to interrogate the fundamental molecular structure and interactions of coral symbiosis and allow critical questions to be addressed at the genomic level based on combined aspects of evolutionary, developmental, metabolic, and environmental perspectives. PMID:23889801

Coral identity underpins architectural complexity on Caribbean reefs.

PubMed

Alvarez-Filip, Lorenzo; Dulvy, Nicholas K; Côte, Isabelle M; Watkinson, Andrew R; Gill, Jennifer A

2011-09-01

The architectural complexity of ecosystems can greatly influence their capacity to support biodiversity and deliver ecosystem services. Understanding the components underlying this complexity can aid the development of effective strategies for ecosystem conservation. Caribbean coral reefs support and protect millions of livelihoods, but recent anthropogenic change is shifting communities toward reefs dominated by stress-resistant coral species, which are often less architecturally complex. With the regionwide decline in reef fish abundance, it is becoming increasingly important to understand changes in coral reef community structure and function. We quantify the influence of coral composition, diversity, and morpho-functional traits on the architectural complexity of reefs across 91 sites at Cozumel, Mexico. Although reef architectural complexity increases with coral cover and species richness, it is highest on sites that are low in taxonomic evenness and dominated by morpho-functionally important, reef-building coral genera, particularly Montastraea. Sites with similar coral community composition also tend to occur on reefs with very similar architectural complexity, suggesting that reef structure tends to be determined by the same key species across sites. Our findings provide support for prioritizing and protecting particular reef types, especially those dominated by key reef-building corals, in order to enhance reef complexity.

Using virtual reality to estimate aesthetic values of coral reefs

PubMed Central

Clifford, Sam; Caley, M. Julian; Pearse, Alan R.; Brown, Ross; James, Allan; Christensen, Bryce; Bednarz, Tomasz; Anthony, Ken; González-Rivero, Manuel; Mengersen, Kerrie; Peterson, Erin E.

2018-01-01

Aesthetic value, or beauty, is important to the relationship between humans and natural environments and is, therefore, a fundamental socio-economic attribute of conservation alongside other ecosystem services. However, beauty is difficult to quantify and is not estimated well using traditional approaches to monitoring coral-reef aesthetics. To improve the estimation of ecosystem aesthetic values, we developed and implemented a novel framework used to quantify features of coral-reef aesthetics based on people's perceptions of beauty. Three observer groups with different experience to reef environments (Marine Scientist, Experienced Diver and Citizen) were virtually immersed in Australian's Great Barrier Reef (GBR) using 360° images. Perceptions of beauty and observations were used to assess the importance of eight potential attributes of reef-aesthetic value. Among these, heterogeneity, defined by structural complexity and colour diversity, was positively associated with coral-reef-aesthetic values. There were no group-level differences in the way the observer groups perceived reef aesthetics suggesting that past experiences with coral reefs do not necessarily influence the perception of beauty by the observer. The framework developed here provides a generic tool to help identify indicators of aesthetic value applicable to a wide variety of natural systems. The ability to estimate aesthetic values robustly adds an important dimension to the holistic conservation of the GBR, coral reefs worldwide and other natural ecosystems. PMID:29765676

Using virtual reality to estimate aesthetic values of coral reefs.

PubMed

Vercelloni, Julie; Clifford, Sam; Caley, M Julian; Pearse, Alan R; Brown, Ross; James, Allan; Christensen, Bryce; Bednarz, Tomasz; Anthony, Ken; González-Rivero, Manuel; Mengersen, Kerrie; Peterson, Erin E

2018-04-01

Aesthetic value, or beauty, is important to the relationship between humans and natural environments and is, therefore, a fundamental socio-economic attribute of conservation alongside other ecosystem services. However, beauty is difficult to quantify and is not estimated well using traditional approaches to monitoring coral-reef aesthetics. To improve the estimation of ecosystem aesthetic values, we developed and implemented a novel framework used to quantify features of coral-reef aesthetics based on people's perceptions of beauty. Three observer groups with different experience to reef environments (Marine Scientist, Experienced Diver and Citizen) were virtually immersed in Australian's Great Barrier Reef (GBR) using 360° images. Perceptions of beauty and observations were used to assess the importance of eight potential attributes of reef-aesthetic value. Among these, heterogeneity, defined by structural complexity and colour diversity, was positively associated with coral-reef-aesthetic values. There were no group-level differences in the way the observer groups perceived reef aesthetics suggesting that past experiences with coral reefs do not necessarily influence the perception of beauty by the observer. The framework developed here provides a generic tool to help identify indicators of aesthetic value applicable to a wide variety of natural systems. The ability to estimate aesthetic values robustly adds an important dimension to the holistic conservation of the GBR, coral reefs worldwide and other natural ecosystems.

Conservation of coral reefs through active restoration measures: recent approaches and last decade progress.

PubMed

Rinkevich, Baruch

2005-06-15

The scientific discipline of active restoration of denuded coral reef areas has drawn much attention in the past decade as it became evident that this ecosystem does not often recover naturally from anthropogenic stress without manipulation. Essentially, the choices are eitherthe continuous degradation of the reefs or active restoration to encourage reef development. As a result, worldwide restoration operations during the past decade have been recognized as being a major tool for reef rehabilitation. This situation has also stirred discussions and debates on the various restoration measures suggested as management options, supplementary to the traditional conservation acts. The present essay reviews past decade's (1994-2004) approaches and advances in coral reef restoration. While direct coral transplantation is still the primer vehicle of operations used, the concept of in situ and ex situ coral nurseries (the gardening concept), where coral materials (nubbins, branches, spats) are maricultured to a size suitable for transplantation, has been gaining recognition. The use of nubbins (down to the size of a single or few polyps) has been suggested and employed as a unique technique for mass production of coral colonies. Restoration of ship grounding sites and the use of artificial reefs have become common tools for specific restoration needs. Substrate stabilization, 3-D structural consideration of developing colonies, and the use of molecular/biochemical tools are part of novel technology approaches developed in the past decade. Economic considerations for reef restoration have become an important avenue for evaluating success of restoration activities. It has been suggested that landscape restoration and restoration genetics are important issues to be studied. In the future, as coral reef restoration may become the dominant conservation act, there would be the need not only to develop improved protocols but also to define the conceptual bases.

Recent and relict topography of Boo Bee patch reef, Belize

USGS Publications Warehouse

Halley, R.B.; Shinn, E.A.; Hudson, J.H.; Lidz, B.; Taylor, D.L.

1977-01-01

Five core borings were taken on and around Boo Bee Patch Reef to better understand the origin of such shelf lagoon reefs. The cores reveal 4 stages of development: (1) subaerial exposure of a Pleistocene "high" having about 8 meters of relief, possibly a Pleistocene patch reef; (2) deposition of peat and impermeable terrigenous clay 3 meters thick around the high; (3) initiation of carbonate sediment production by corals and algae on the remaining 5 meters of hard Pleistocene topography and carbonate mud on the surrounding terrigenous clay; and (4) accelerated organic accumulation on the patch reef. Estimates of patch reef sedimentation rates (1.6 m/1000 years) are 3 to 4 times greater than off-reef sedimentation rates (0.4-0.5 m/1000 years). During periods of Pleistocene sedimentation on the Belize shelf, lagoon patch reefs may have grown above one another, stacking up to form reef accumulation of considerable thickness.

Artificial reefs and reef restoration in the Laurentian Great Lakes

USGS Publications Warehouse

McLean, Matthew W.; Roseman, Edward; Pritt, Jeremy J.; Kennedy, Gregory W.; Manny, Bruce A.

2015-01-01

We reviewed the published literature to provide an inventory of Laurentian Great Lakes artificial reef projects and their purposes. We also sought to characterize physical and biological monitoring for artificial reef projects in the Great Lakes and determine the success of artificial reefs in meeting project objectives. We found records of 6 artificial reefs in Lake Erie, 8 in Lake Michigan, 3 in Lakes Huron and Ontario, and 2 in Lake Superior. We found 9 reefs in Great Lakes connecting channels and 6 reefs in Great Lakes tributaries. Objectives of artificial reef creation have included reducing impacts of currents and waves, providing safe harbors, improving sport-fishing opportunities, and enhancing/restoring fish spawning habitats. Most reefs in the lakes themselves were incidental (not created purposely for fish habitat) or built to improve local sport fishing, whereas reefs in tributaries and connecting channels were more frequently built to benefit fish spawning. Levels of assessment of reef performance varied; but long-term monitoring was uncommon as was assessment of physical attributes. Artificial reefs were often successful at attracting recreational species and spawning fish; however, population-level benefits of artificial reefs are unclear. Stressors such as sedimentation and bio-fouling can limit the effectiveness of artificial reefs as spawning enhancement tools. Our investigation underscores the need to develop standard protocols for monitoring the biological and physical attributes of artificial structures. Further, long-term monitoring is needed to assess the benefits of artificial reefs to fish populations and inform future artificial reef projects.

Patch reef modeling: a comparison of Devonian and recent examples

DOE Office of Scientific and Technical Information (OSTI.GOV)

Precht, W.F.

In reef research, models have been developed to define variations in the lithic and biotic development of facies. Walker and Alberstadt, and Hoffman and Narkiewicz developed models for growth of ancient reef communities. Although these models form a solid foundation by which patch reefs can be classed and zoned, they are neither complete nor accurate for all reef types. A comparison was made of Lower Devonian patch reefs from the Appalachian basin of New York, New Jersey, and Pennsylvania, and Holocene examples from the Bahamas and Florida Keys to identify the structure, orientation, community variability, and succession of the reefmore » biofacies. The complexion and genesis of the carbonate lithofacies were also studied. Results show similarities; these include the size, areal distribution, 3-D geometry, wave-resistance potential, lateral sequences of facies, sedimentary textures and structures, vertical zonation explained by growth from low-energy to high-energy regimes, biotic diversity, growth habit and form, and postmortem alteration. Thus, when used in conjunction with the traditional models, the recent can serve as the basis for a general model which include most patch reef types. However, these models should not be used as explicit analogs for all Phanerozoic reefs. Knowing and understanding the limitations of these comparative studies are essential to a fuller comprehension of the potential for variations which exist within and between the traditional models.« less

First draft genome of an iconic clownfish species (Amphiprion frenatus).

PubMed

Marcionetti, Anna; Rossier, Victor; Bertrand, Joris A M; Litsios, Glenn; Salamin, Nicolas

2018-02-17

Clownfishes (or anemonefishes) form an iconic group of coral reef fishes, principally known for their mutualistic interaction with sea anemones. They are characterized by particular life history traits, such as a complex social structure and mating system involving sequential hermaphroditism, coupled with an exceptionally long lifespan. Additionally, clownfishes are considered to be one of the rare groups to have experienced an adaptive radiation in the marine environment. Here, we assembled and annotated the first genome of a clownfish species, the tomato clownfish (Amphiprion frenatus). We obtained 17,801 assembled scaffolds, containing a total of 26,917 genes. The completeness of the assembly and annotation was satisfying, with 96.5% of the Actinopterygii Benchmarking Universal Single-Copy Orthologs (BUSCOs) being retrieved in A. frenatus assembly. The quality of the resulting assembly is comparable to other bony fish assemblies. This resource is valuable for advancing studies of the particular life history traits of clownfishes, as well as being useful for population genetic studies and the development of new phylogenetic markers. It will also open the way to comparative genomics. Indeed, future genomic comparison among closely related fishes may provide means to identify genes related to the unique adaptations to different sea anemone hosts, as well as better characterize the genomic signatures of an adaptive radiation. © 2018 The Authors. Molecular Ecology Resources Published by John Wiley & Sons Ltd.

Automated benthic counting of living and non-living components in Ngedarrak Reef, Palau via subsurface underwater video.

PubMed

Marcos, Ma Shiela Angeli; David, Laura; Peñaflor, Eileen; Ticzon, Victor; Soriano, Maricor

2008-10-01

We introduce an automated benthic counting system in application for rapid reef assessment that utilizes computer vision on subsurface underwater reef video. Video acquisition was executed by lowering a submersible bullet-type camera from a motor boat while moving across the reef area. A GPS and echo sounder were linked to the video recorder to record bathymetry and location points. Analysis of living and non-living components was implemented through image color and texture feature extraction from the reef video frames and classification via Linear Discriminant Analysis. Compared to common rapid reef assessment protocols, our system can perform fine scale data acquisition and processing in one day. Reef video was acquired in Ngedarrak Reef, Koror, Republic of Palau. Overall success performance ranges from 60% to 77% for depths of 1 to 3 m. The development of an automated rapid reef classification system is most promising for reef studies that need fast and frequent data acquisition of percent cover of living and nonliving components.

Development of A 2,000-10,000-Lb Improved Container Delivery System

DTIC Science & Technology

2010-04-01

System. The fourth airdrop system within the program is the Skirt Reefed G-12. The Skirt Reefed G-12 is intended to be a HV airdrop system...UNCLASSIFIED 5 D. Skirt Reefed G-12 System The Skirt Reefed G-12 System utilizes the G-12 parachute packed in accordance with Humanitarian Airdrop...Procedures2 with a slight variation in the reefing line material used. After several tests and many failures, the 9/16- inch tubular nylon and 2 turns of

Watershed processes from ridge to reef: consequences of feral ungulates for coral reef and effects of watershed management

Treesearch

Gordon Tribble; Jonathan Stock; Jim Jacobi

2016-01-01

Molokai’s south shore has some of Hawaii’s most extensive and best-developed coral reefs. Historic terrigenous sedimentation appears to have impacted coral growth along several miles of fringing reef. The land upslope of the reef consists of small watersheds with streams that flow intermittently to the ocean. A USGS gage at the outlet of one of the most impacted...

Geomorphology of unique reefs on the western Canadian shelf: sponge reefs mapped by multibeam bathymetry

NASA Astrophysics Data System (ADS)

Conway, Kim W.; Barrie, J. Vaughn; Krautter, Manfred

2005-09-01

Multibeam imagery of siliceous sponge reefs (Hexactinellida, Hexactinosida) reveals the setting, form, and organization of five reef complexes on the western Canadian continental shelf. The reefs are built by framework skeleton sponges which trap clay-rich sediments resulting in a distinctive pattern of low intensity backscatter from the reefs that colonize more reflective glacial sediments of higher backscatter intensity. Bathymetry and backscatter maps show the distribution and form of reefs in two large complexes in the Queen Charlotte Basin (QCB) covering hundreds of km2, and three smaller reef complexes in the Georgia Basin (GB). Ridges up to 7 km long and 21 m in height, together with diversely shaped, coalescing bioherms and biostromes form the principal reef shape in the QCB whereas chains of wave-form, streamlined mounds up to 14 m in height have developed in the GB. Reef initiation is dependent on the distribution of high backscatter-intensity relict glacial surfaces, and the variation in reef complex morphology is probably the result of tidally driven, near seabed currents.

Valuing snorkeling visits to the Florida Keys with stated and revealed preference models

Treesearch

Timothy Park; J. Michael Bowker; Vernon R. Leeworthy

2002-01-01

Coastal coral reefs, especially in the Florida Keys, are declining at a disturbing rate. Marine ecologists and reef scientists have emphasized the importance of establishing nonmarket values of coral reefs to assess the cost effectiveness of coral reef management and remediation programs. The purpose of this paper is to develop a travel cost--contingent valuation model...

Maximizing oyster-reef growth supports green infrastructure with accelerating sea-level rise.

PubMed

Ridge, Justin T; Rodriguez, Antonio B; Joel Fodrie, F; Lindquist, Niels L; Brodeur, Michelle C; Coleman, Sara E; Grabowski, Jonathan H; Theuerkauf, Ethan J

2015-10-07

Within intertidal communities, aerial exposure (emergence during the tidal cycle) generates strong vertical zonation patterns with distinct growth boundaries regulated by physiological and external stressors. Forecasted accelerations in sea-level rise (SLR) will shift the position of these critical boundaries in ways we cannot yet fully predict, but landward migration will be impaired by coastal development, amplifying the importance of foundation species' ability to maintain their position relative to rising sea levels via vertical growth. Here we show the effects of emergence on vertical oyster-reef growth by determining the conditions at which intertidal reefs thrive and the sharp boundaries where reefs fail, which shift with changes in sea level. We found that oyster reef growth is unimodal relative to emergence, with greatest growth rates occurring between 20-40% exposure, and zero-growth boundaries at 10% and 55% exposures. Notably, along the lower growth boundary (10%), increased rates of SLR would outpace reef accretion, thereby reducing the depth range of substrate suitable for reef maintenance and formation, and exacerbating habitat loss along developed shorelines. Our results identify where, within intertidal areas, constructed or natural oyster reefs will persist and function best as green infrastructure to enhance coastal resiliency under conditions of accelerating SLR.

Fringing coral reef condition decline: assembling the puzzle of human impact associated to coastal development.

NASA Astrophysics Data System (ADS)

Garza-Perez, J. R.; Lopez-Patoni, A.; Naranjo-Garcia, M. J.

2014-12-01

Coral cover at Akumal fringing coral reef decreased 50% in a 13 yr. period, while the adjacent coastal zone increased its human-modified surface (associated to urban-tourist development) in 192%. In the same period, the number of local residents only increased 20% (1088 to1362) but the visitors did in 50% from ca. 200,000 to ca. 300,000. In this coastal zone, the phreatic acts as a storage of nutrients and pollutants from sources related to human activity, thus having a chronic run-off towards the reef, with acute episodes during the rainy season, specially during the anomalous rainy season of 2013. Using videotransects for monitoring the benthic reef components, changes were detected: from 2000 to 2013 the algae cover increased 166%, the reef condition and the reef structure indexes decreased in 50%, and coral diseases incidence increased 25% after a spike increment of 150% in 2010. The role of anthropogenic-stress indicators (population, modified land area, nutrients) was explored along reef condition indicators (reef structure and diversity indexes, topographic complexity, benthic cover and coral diseases incidence) via spatial analysis and multivariate statistics. Spatial patterns of the change in reef condition derived from high-resolution satellite imagery also provided insight for the stressors analysis and their relationships along the study period. Stress indicators (land-modified area and population) are correlated to decreases in coral cover and in reef structure. Direct stressors as sedimentation, nutrients and pollutants seem to be related to the decrease in overall reef condition, although time-series data is lacking; the contextual interpretation of their effects, paired with benthic condition characteristics suggest a strong relationship between these stressors and the decrease in the condition of the reef.

Expanded Florida reef development during the mid-Pliocene warm period

NASA Astrophysics Data System (ADS)

Klaus, James S.; Meeder, John F.; McNeill, Donald F.; Woodhead, Jon F.; Swart, Peter K.

2017-05-01

The coral fauna of the Tamiami Formation documents a northern expansion of reef development along the Florida Peninsula during the mid-Pliocene warm period (MPWP). Radiometric dating (U-Pb) of Solenastrea bournoni produced an age of 2.99 ± 0.11 Ma, constraining reef development to the MPWP and the peak of Plio-Pleistocene faunal turnover; subsequent to the final closure of the Central American Seaway (CAS) but prior to major Northern Hemisphere Glaciation (NHG). Coral faunal analyses are based on a total of 1614 coral specimens collected along a 165 km stretch of the west Florida coast, and included rarefaction and detrended correspondence analysis (DCA). A total of 60 coral species occur within the Tamiami Formation, with faunal assemblages ranging from 42 to 87% extinct taxa. The Tamiami collections can be split into a southern "reef" assemblage with high diversity of stenotopic taxa and a northern "non-reef" assemblage with lower diversity eurytopic taxa. The southern reef assemblage contains framework buildups of the dominant tropical taxa Stylophora affinis, Orbicella annularis, and Acropora cervicornis. We interpret enhanced west Florida reef development during the middle Pliocene to be a product of more equitable sea surface temperatures, and reduced salinity fluctuations associated with higher sea levels. While mean sea surface temperature estimates based on oxygen isotopic analysis of the coral Solenastrea bournoni (25.3 °C) are similar to present day values (26 °C), a completely flooded southern Florida Platform in the Pliocene would be less prone to salinity fluctuations associated with coastal runoff and extreme cold-water events during winter storms. While higher latitude range shifts of tropical reef corals associated with current global climate change have been documented elsewhere in the world, we do not foresee the West Florida Shelf being conducive to significant range shifts in tropical coral taxa or reef development within the coming century.

Oyster reef restoration in the Northern Gulf of Mexico: effect of artificial substrate and sge on nekton and benthic macroinvertebrate assemblage use

USGS Publications Warehouse

Brown, Laura A.; Furlong, Jessica N.; Brown, Kenneth M.; LaPeyre, Megan K.

2013-01-01

In the northern Gulf of Mexico (GOM), reefs built by eastern oysters, Crassostrea virginica, provide critical habitat within shallow estuaries, and recent efforts have focused on restoring reefs to benefit nekton and benthic macroinvertebrates. We compared nekton and benthic macroinvertebrate assemblages at historic, newly created (<5years) and old (>6years) shell and rock substrate reefs. Using crab traps, gill-nets, otter trawls, cast nets, and benthic macroinvertebrate collectors, 20 shallow reefs (<5m) in the northern GOM were sampled throughout the summer of 2011. We compared nekton and benthic assemblage abundance, diversity and composition across reef types. Except for benthic macroinvertebrate abundance, which was significantly higher on old rock reefs as compared to historic reefs, all reefs were similar to historic reefs, suggesting created reefs provide similar support of nekton and benthic assemblages as historic reefs. To determine refuge value of oyster structure for benthic macroinvertebrates compared to bare bottom, we tested preferences of juvenile crabs across depth and refuge complexity in the presence and absence of adult blue crabs (Callinectes sapidus). Juveniles were more likely to use deep water with predators present only when provided oyster structure. Provision of structural material to support and sustain development of benthic and mobile reef communities may be the most important factor in determining reef value to these assemblages, with biophysical characteristics related to reef location influencing assemblage patterns in areas with structure; if so, appropriately locating created reefs is critical.

Water Quality Standards for Coral Reef Protection | Science ...

EPA Pesticide Factsheets

The U.S. Clean Water Act provides a legal framework to protect coastal biological resources such as coral reefs, mangrove forests, and seagrass meadows from the damaging effects of human activities. Even though many resources are protected under this authority, water quality standards have not been effectively applied to coral reefs. The Environmental Protection Agency is promoting biocriteria and other water quality standards through collaborative development of bioassessment procedures, indicators and monitoring strategies. To support regulatory action, bioassessment indicators must be biologically meaningful, relevant to management, responsive to human disturbance, and relatively immune to natural variability. A rapid bioassessment protocol for reef-building stony corals was developed and tested for regulatory applicability. Preliminary testing in the Florida Keys found indicators had sufficient precision and provided information relevant to coral reef management. Sensitivity to human disturbance was demonstrated in the U.S. Virgin Islands for five of eight indicators tested. Once established, monitoring programs using these indicators can provide valuable, long-term records of coral condition and regulatory compliance. Development of a rapid bioassement protocol for reef-building stony corals was tested for regulatory applicability.

Oyster reef restoration in the northern Gulf of Mexico: extent, methods and outcomes

USGS Publications Warehouse

LaPeyre, Megan K.; Furlong, Jessica N.; Brown, Laura A.; Piazza, Bryan P.; Brown, Ken

2014-01-01

Shellfish reef restoration to support ecological services has become more common in recent decades, driven by increasing awareness of the functional decline of shellfish systems. Maximizing restoration benefits and increasing efficiency of shellfish restoration activities would greatly benefit from understanding and measurement of system responses to management activities. This project (1) compiles a database of northern Gulf of Mexico inshore artificial oyster reefs created for restoration purposes, and (2) quantitatively assesses a subset of reefs to determine project outcomes. We documented 259 artificial inshore reefs created for ecological restoration. Information on reef material, reef design and monitoring was located for 94, 43 and 20% of the reefs identified. To quantify restoration success, we used diver surveys to quantitatively sample oyster density and substrate volume of 11 created reefs across the coast (7 with rock; 4 with shell), paired with 7 historic reefs. Reefs were defined as fully successful if there were live oysters, and partially successful if there was hard substrate. Of these created reefs, 73% were fully successful, while 82% were partially successful. These data highlight that critical information related to reef design, cost, and success remain difficult to find and are generally inaccessible or lost, ultimately hindering efforts to maximize restoration success rates. Maintenance of reef creation information data, development of standard reef performance measures, and inclusion of material and reef design testing within reef creation projects would be highly beneficial in implementing adaptive management. Adaptive management protocols seek specifically to maximize short and long-term restoration success, but are critically dependent on tracking and measuring system responses to management activities.

Millennial-scale ocean acidification and late Quaternary

DOE Office of Scientific and Technical Information (OSTI.GOV)

Riding, Dr Robert E; Liang, Liyuan; Braga, Dr Juan Carlos

Ocean acidification by atmospheric carbon dioxide has increased almost continuously since the last glacial maximum (LGM), 21 000 years ago. It is expected to impair tropical reef development, but effects on reefs at the present day and in the recent past have proved difficult to evaluate. We present evidence that acidification has already significantly reduced the formation of calcified bacterial crusts in tropical reefs. Unlike major reef builders such as coralline algae and corals that more closely control their calcification, bacterial calcification is very sensitive to ambient changes in carbonate chemistry. Bacterial crusts in reef cavities have declined in thicknessmore » over the past 14 000 years with largest reduction occurring 12 000 10 000 years ago. We interpret this as an early effect of deglacial ocean acidification on reef calcification and infer that similar crusts were likely to have been thicker when seawater carbonate saturation was increased during earlier glacial intervals, and thinner during interglacials. These changes in crust thickness could have substantially affected reef development over glacial cycles, as rigid crusts significantly strengthen framework and their reduction would have increased the susceptibility of reefs to biological and physical erosion. Bacterial crust decline reveals previously unrecognized millennial-scale acidification effects on tropical reefs. This directs attention to the role of crusts in reef formation and the ability of bioinduced calcification to reflect changes in seawater chemistry. It also provides a long-term context for assessing anticipated anthropogenic effects.« less

Differential impact of monsoon and large amplitude internal waves on coral reef development in the Andaman Sea.

PubMed

Wall, Marlene; Schmidt, Gertraud Maria; Janjang, Pornpan; Khokiattiwong, Somkiat; Richter, Claudio

2012-01-01

The Andaman Sea and other macrotidal semi-enclosed tropical seas feature large amplitude internal waves (LAIW). Although LAIW induce strong fluctuations i.e. of temperature, pH, and nutrients, their influence on reef development is so far unknown. A better-known source of disturbance is the monsoon affecting corals due to turbulent mixing and sedimentation. Because in the Andaman Sea both, LAIW and monsoon, act from the same westerly direction their relative contribution to reef development is difficult to discern. Here, we explore the framework development in a number of offshore island locations subjected to differential LAIW- and SW-monsoon impact to address this open question. Cumulative negative temperature anomalies - a proxy for LAIW impact - explained a higher percentage of the variability in coral reef framework height, than sedimentation rates which resulted mainly from the monsoon. Temperature anomalies and sediment grain size provided the best correlation with framework height suggesting that so far neglected subsurface processes (LAIW) play a significant role in shaping coral reefs.

Microbes in the coral holobiont: partners through evolution, development, and ecological interactions

PubMed Central

Thompson, Janelle R.; Rivera, Hanny E.; Closek, Collin J.; Medina, Mónica

2015-01-01

In the last two decades, genetic and genomic studies have revealed the astonishing diversity and ubiquity of microorganisms. Emergence and expansion of the human microbiome project has reshaped our thinking about how microbes control host health—not only as pathogens, but also as symbionts. In coral reef environments, scientists have begun to examine the role that microorganisms play in coral life history. Herein, we review the current literature on coral-microbe interactions within the context of their role in evolution, development, and ecology. We ask the following questions, first posed by McFall-Ngai et al. (2013) in their review of animal evolution, with specific attention to how coral-microbial interactions may be affected under future environmental conditions: (1) How do corals and their microbiome affect each other's genomes? (2) How does coral development depend on microbial partners? (3) How is homeostasis maintained between corals and their microbial symbionts? (4) How can ecological approaches deepen our understanding of the multiple levels of coral-microbial interactions? Elucidating the role that microorganisms play in the structure and function of the holobiont is essential for understanding how corals maintain homeostasis and acclimate to changing environmental conditions. PMID:25621279

Coral reefs as drivers of cladogenesis: expanding coral reefs, cryptic extinction events, and the development of biodiversity hotspots.

PubMed

Cowman, P F; Bellwood, D R

2011-12-01

Diversification rates within four conspicuous coral reef fish families (Labridae, Chaetodontidae, Pomacentridae and Apogonidae) were estimated using Bayesian inference. Lineage through time plots revealed a possible late Eocene/early Oligocene cryptic extinction event coinciding with the collapse of the ancestral Tethyan/Arabian hotspot. Rates of diversification analysis revealed elevated cladogenesis in all families in the Oligocene/Miocene. Throughout the Miocene, lineages with a high percentage of coral reef-associated taxa display significantly higher net diversification rates than expected. The development of a complex mosaic of reef habitats in the Indo-Australian Archipelago (IAA) during the Oligocene/Miocene appears to have been a significant driver of cladogenesis. Patterns of diversification suggest that coral reefs acted as a refuge from high extinction, as reef taxa are able to sustain diversification at high extinction rates. The IAA appears to support both cladogenesis and survival in associated lineages, laying the foundation for the recent IAA marine biodiversity hotspot. © 2011 The Authors. Journal of Evolutionary Biology © 2011 European Society For Evolutionary Biology.

Projecting of wave height and water level on reef-lined coasts due to intensified tropical cyclones and sea level rise in Palau to 2100

NASA Astrophysics Data System (ADS)

Hongo, Chuki; Kurihara, Haruko; Golbuu, Yimnang

2018-03-01

Tropical cyclones (TCs) and sea level rise (SLR) cause major problems including beach erosion, saltwater intrusion into groundwater, and damage to infrastructure in coastal areas. The magnitude and extent of damage is predicted to increase as a consequence of future climate change and local factors. Upward reef growth has attracted attention for its role as a natural breakwater, reducing the risks of natural disasters to coastal communities. However, projections of change in the risk to coastal reefs under conditions of intensified TCs and SLR are poorly quantified. In this study we projected the wave height and water level on Melekeok reef in the Palau Islands by 2100, based on wave simulations under intensified TCs (significant wave height at the outer ocean: SWHo = 8.7-11.0 m; significant wave period at the outer ocean: SWPo = 13-15 s) and SLR (0.24-0.98 m). To understand effects of upward reef growth on the reduction of the wave height and water level, the simulation was conducted for two reef condition scenarios: a degraded reef and a healthy reef. Moreover, analyses of reef growth based on a drilled core provided an assessment of the coral community and rate of reef production necessary to reduce the risk from TCs and SLR on the coastal areas. According to our calculations under intensified TCs and SLR by 2100, significant wave heights at the reef flat (SWHr) will increase from 1.05-1.24 m at present to 2.14 m if reefs are degraded. Similarly, by 2100 the water level at the shoreline (WLs) will increase from 0.86-2.10 m at present to 1.19-3.45 m if reefs are degraded. These predicted changes will probably cause beach erosion, saltwater intrusion into groundwater, and damage to infrastructure, because the coastal village is located at ˜ 3 m above the present mean sea level. These findings imply that even if the SWHr is decreased by only 0.1 m by upward reef growth, it will probably reduce the risks of costal damages. Our results showed that a healthy reef will reduce a maximum of 0.44 m of the SWHr. According to analysis of drilled core, corymbose Acropora corals will be key to reducing the risks, and 2.6-5.8 kg CaCO3 m-2 yr-1, equivalent to > 8 % of coral cover, will be required to keep a healthy reef by 2100. This study highlights that the maintaining reef growth (as a function of coral cover) in the future is effective in reducing the risk of coastal damage arising from wave action. Although the present study focuses on Melekeok fringing reef, many coral reefs are in the same situation under conditions of intensified TCs and SLR, and therefore the results of this study are applicable to other reefs. These researches are critical in guiding policy development directed at disaster prevention for small island nations and for developing and developed countries.

Exploring coral reef responses to millennial-scale climatic forcings: insights from the 1-D numerical tool pyReef-Core v1.0

NASA Astrophysics Data System (ADS)

Salles, Tristan; Pall, Jodie; Webster, Jody M.; Dechnik, Belinda

2018-06-01

Assemblages of corals characterise specific reef biozones and the environmental conditions that change spatially across a reef and with depth. Drill cores through fossil reefs record the time and depth distribution of assemblages, which captures a partial history of the vertical growth response of reefs to changing palaeoenvironmental conditions. The effects of environmental factors on reef growth are well understood on ecological timescales but are poorly constrained at centennial to geological timescales. pyReef-Core is a stratigraphic forward model designed to solve the problem of unobservable environmental processes controlling vertical reef development by simulating the physical, biological and sedimentological processes that determine vertical assemblage changes in drill cores. It models the stratigraphic development of coral reefs at centennial to millennial timescales under environmental forcing conditions including accommodation (relative sea-level upward growth), oceanic variability (flow speed, nutrients, pH and temperature), sediment input and tectonics. It also simulates competitive coral assemblage interactions using the generalised Lotka-Volterra system of equations (GLVEs) and can be used to infer the influence of environmental conditions on the zonation and vertical accretion and stratigraphic succession of coral assemblages over decadal timescales and greater. The tool can quantitatively test carbonate platform development under the influence of ecological and environmental processes and efficiently interpret vertical growth and karstification patterns observed in drill cores. We provide two realistic case studies illustrating the basic capabilities of the model and use it to reconstruct (1) the Holocene history (from 8500 years to present) of coral community responses to environmental changes and (2) the evolution of an idealised coral reef core since the last interglacial (from 140 000 years to present) under the influence of sea-level change, subsidence and karstification. We find that the model reproduces the details of the formation of existing coral reef stratigraphic sequences both in terms of assemblages succession, accretion rates and depositional thicknesses. It can be applied to estimate the impact of changing environmental conditions on growth rates and patterns under many different settings and initial conditions.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mazzullo, S.J.; Anderson-Underwood, K.E.; Burke, C.D.

Coral patch reefs are major components of Holocene platform carbonate facies systems in tropical and subtropical areas. The biotic composition, growth and relationship to sea level history, and diagenetic attributes of a representative Holocene patch reef ([open quotes]Elmer Reef[close quotes]) in the Mexico Rocks complex in northern Belize are described and compared to those of Holocene patch reefs in southern Belize. Elmer Reef has accumulated in shallow (2.5 m) water over the last 420 yr, under static sea level conditions. Rate of vertical construction is 0.3-0.5 m/100 yr, comparable to that of patch reefs in southern Belize. A pronounced coralmore » zonation exists across Elmer Reef, with Monastrea annularis dominating on its crest and Acropora cervicornis occurring on its windward and leeward flanks. The dominance of Montastrea on Elmer Reef is unlike that of patch reefs in southern Belize, in which this coral assumes only a subordinate role in reef growth relative to that of Acropora palmata. Elmer Reef locally is extensively biodegraded and marine, fibrous aragonite and some bladed high-magnesium calcite cements occur throughout the reef section, partially occluding corallites and interparticle pores in associated sands. Patch reefs in southern Belize have developed as catch-up and keep-up reefs in a transgressive setting. In contrast, the dominant mode of growth of Elmer Reef, and perhaps other patch reefs in Mexico Rocks, appears to be one of lateral rather than vertical accretion. This style of growth occurs in a static sea level setting where there is only limited accommodation space because of the shallowness of the water, and such reefs are referred to as [open quotes]expansion reefs[close quotes]. 39 refs., 8 figs., 2 tabs.« less

An overview of Miocene reefs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jordan, C.F. Jr.; Colgan, M.W.; Frost, S.H.

1990-05-01

Miocene reefs lived approximately within the latitudes of 27{degree}S to 48{degree}N compared with 25{degree}S and 32{degree}N for Holocene reefs. This expansion of reef-growing environments was the result of warm Miocene climates, aided by a eustatic sea level rise and tectonic styles that provided numerous foundations for reef development. The majority of Miocene reefs are found in three main areas: (1) Southeast Asia and the western Pacific, (2) the Mediterranean-Middle East, and (3) Middle America and the Caribbean. These regions, with their distinctive suites of coral and foramineral species, formed three biological provinces; respectively, they are the Indo-Pacific, Tethyan, and Westernmore » Atlantic provinces. Miocene reefs in Southeast Asia occur in several foreland basins as patch reef complexes on paleohighs and as barrier reefs in back-arc basins. Those reefs in the Mediterranean occur as fringing reefs, middle-shelf patch reefs, or as barrier reefs on the edges of tectonic blocks associated with Alpine thrust belts. Most reefs in the Caribbean grew on isolated open-ocean highs of volcanic origin. Miocene reefs display a diversity of framework types: (1) coral-encrusting, red algal boundstones with diverse coral faunas, (2) branching coral-encrusting, red algal boundstones with a limited Poritid fauna, (3) encrusting red algal boundstones. Barrier reef systems are especially rich in encrusting red algae and robust corals; grainstones are common as interbedded sediment. Patch reef complexes, however, display muddy carbonate textures, may have less diverse coral faunas, and commonly have larger foraminifera. The global distribution of Miocene reefs is important because (1) it provides insight into a paleoclimatic view of the earth during a major greenhouse stage and (2) Miocene buildups, such as the Arun (EUR of 14 tcf) and Bima fields (EUR of about 100 MMBO), are exploration targets.« less

A detrital sediment budget of a Maldivian reef platform

NASA Astrophysics Data System (ADS)

Morgan, K. M.; Kench, P. S.

2014-10-01

Sediment dynamics are an important control on the morphology and development of reef systems by actively removing and redistributing excess detrital sediment. This study presents quantitative data from direct point measurements of sediment transport on the platform surface and fore-reef slope of Vabbinfaru reef, North Malé Atoll, Maldives. A suite of sediment traps were used to construct actual rates of platform sediment fluxes and off-reef export over different spatial and temporal (seasonal) scales to establish key sediment transport pathways. Findings showed that high sediment fluxes occur on Vabbinfaru platform in the absence of major storm activity (up to 1905 g m- 1 d- 1), with 95% of annual transport occurring during the southwest monsoon as a result of increased wave energy. Climate-driven changes in the platform process regime caused a reversal of net sediment transport pathways between each monsoon season. Off-reef export rates were high, reaching a maximum of 12.58 kg m- 1 y- 1 for gravel and 407 g m- 1 d- 1 for sand-sized sediment. An estimated 127,120 kg is exported from the platform annually equating to a significant loss from the reef sediment budget and contributing to the long-term geomorphic development of the fore-reef slope and atoll basin. Detrital sediment reservoirs on Vabbinfaru are not purely depositional carbonate sinks, but rather temporary stores that are important in the transfer of sediment between reef zones.

Ocean acidification reduces sperm flagellar motility in broadcast spawning reef invertebrates.

PubMed

Morita, Masaya; Suwa, Ryota; Iguchi, Akira; Nakamura, Masako; Shimada, Kazuaki; Sakai, Kazuhiko; Suzuki, Atsushi

2010-05-01

Ocean acidification is now recognized as a threat to marine ecosystems; however, the effect of ocean acidification on fertilization in marine organisms is still largely unknown. In this study, we focused on sperm flagellar motility in broadcast spawning reef invertebrates (a coral and a sea cucumber). Below pH 7.7, the pH predicted to occur within the next 100 years, sperm flagellar motility was seriously impaired in these organisms. Considering that sperm flagellar motility is indispensable for transporting the paternal haploid genome for fertilization, fertilization taking place in seawater may decline in the not too distant future. Urgent surveys are necessary for a better understanding of the physiological consequences of ocean acidification on sperm flagellar motility in a wide range of marine invertebrates.

Biomimetric sentinel reef structures for optical sensing and communications

NASA Astrophysics Data System (ADS)

Fries, David; Hutcheson, Tim; Josef, Noam; Millie, David; Tate, Connor

2017-05-01

Traditional artificial reef structures are designed with uniform cellular architectures and topologies and do not mimic natural reef forms. Strings and ropes are a proven, common fisheries and mariculture construction element throughout the world and using them as artificial reef scaffolding can enable a diversity of ocean sensing, communications systems including the goal of sentinel reefs. The architecture and packaging of electronics is key to enabling such structures and systems. The distributed sensor reef concept leads toward a demonstrable science-engineering-informed framework for 3D smart habitat designs critical to stock fish development and coastal monitoring and protection. These `nature-inspired' reef infrastructures, can enable novel instrumented `reef observatories' capable of collecting real-time ecosystem data. Embedding lighting and electronic elements into artificial reef systems are the first systems conceptualized. This approach of bringing spatial light to the underwater world for optical sensing, communication and even a new breed of underwater robotic vehicle is an interdisciplinary research activity which integrates principles of electronic packaging, and ocean technology with art/design.

Satellite imaging coral reef resilience at regional scale. A case-study from Saudi Arabia.

PubMed

Rowlands, Gwilym; Purkis, Sam; Riegl, Bernhard; Metsamaa, Liisa; Bruckner, Andrew; Renaud, Philip

2012-06-01

We propose a framework for spatially estimating a proxy for coral reef resilience using remote sensing. Data spanning large areas of coral reef habitat were obtained using the commercial QuickBird satellite, and freely available imagery (NASA, Google Earth). Principles of coral reef ecology, field observation, and remote observations, were combined to devise mapped indices. These capture important and accessible components of coral reef resilience. Indices are divided between factors known to stress corals, and factors incorporating properties of the reef landscape that resist stress or promote coral growth. The first-basis for a remote sensed resilience index (RSRI), an estimate of expected reef resilience, is proposed. Developed for the Red Sea, the framework of our analysis is flexible and with minimal adaptation, could be extended to other reef regions. We aim to stimulate discussion as to use of remote sensing to do more than simply deliver habitat maps of coral reefs. Copyright © 2012 Elsevier Ltd. All rights reserved.

Reefing Line Tension in CPAS Main Parachute Clusters

NASA Technical Reports Server (NTRS)

Ray, Eric S.

2013-01-01

Reefing lines are an essential feature to manage inflation loads. During each Engineering Development Unit (EDU) test of the Capsule Parachute Assembly System (CPAS), a chase aircraft is staged to be level with the cluster of Main ringsail parachutes during the initial inflation and reefed stages. This allows for capturing high-quality still photographs of the reefed skirt, suspension line, and canopy geometry. The over-inflation angles are synchronized with measured loads data in order to compute the tension force in the reefing line. The traditional reefing tension equation assumes radial symmetry, but cluster effects cause the reefed skirt of each parachute to elongate to a more elliptical shape. This effect was considered in evaluating multiple parachutes to estimate the semi-major and semi-minor axes. Three flight tests are assessed, including one with a skipped first stage, which had peak reefing line tension over three times higher than the nominal parachute disreef sequence.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cross, S.L.; Lighty, R.G.

Coral-rudist reefs of the Lower Cretaceous Mural limestone, southeastern Arizona, show a pronounced relationship between specific reef facies, primary porosity, and early submarine diagenesis. These large open-shelf reefs differ from the well-studied low-relief rudist buildups, and provide an alternate analog for many Cretaceous reef reservoirs. Arizona buildups have diverse corals, high depositional relief, and a well-developed facies zonation from fore reef to back reef: skeletal grainstone talus, muddy fore reef with branching and lamellar corals, massive reef crest with abundant lamellar corals and sandy matrix, protected thickets of delicate branching corals and large rudist mounds, and a wide sediment apronmore » of well-washed coral, rudist, and benthic foraminiferal sands. These well-exposed outcrops permit a detailed facies comparison of primary interparticle porosity. Porosity as high as 40% in grainstones was occluded by later subsurface cements. Reef-framework interparticle porosity was negligible because fore-reef coral and back-reef rudist facies were infilled by muds, and high-energy reef-crest frameworks were filled by peloidal submarine cement crusts and muddy skeletal sands. These thick crusts coated lamellar corals in cryptic and open reef-crest areas, and are laminated with ripple and draped bed forms that suggest current influence. Similar peloidal crusts and laminated textures are common magnesium-calcite submarine cement features in modern reefs. By documenting specific facies control on early cementation and textural variability, patterns of late-stage subsurface diagenesis and secondary porosity may be more easily explained for Cretaceous reef reservoirs. Significant primary porosity might be retained between sands in back-reef facies and within coral skeletons.« less

Extensive Differences in Gene Expression Between Symbiotic and Aposymbiotic Cnidarians

PubMed Central

Lehnert, Erik M.; Mouchka, Morgan E.; Burriesci, Matthew S.; Gallo, Natalya D.; Schwarz, Jodi A.; Pringle, John R.

2013-01-01

Coral reefs provide habitats for a disproportionate number of marine species relative to the small area of the oceans that they occupy. The mutualism between the cnidarian animal hosts and their intracellular dinoflagellate symbionts provides the nutritional foundation for coral growth and formation of reef structures, because algal photosynthesis can provide >90% of the total energy of the host. Disruption of this symbiosis (“coral bleaching”) is occurring on a large scale due primarily to anthropogenic factors and poses a major threat to the future of coral reefs. Despite the importance of this symbiosis, the cellular mechanisms involved in its establishment, maintenance, and breakdown remain largely unknown. We report our continued development of genomic tools to study these mechanisms in Aiptasia, a small sea anemone with great promise as a model system for studies of cnidarian–dinoflagellate symbiosis. Specifically, we have generated de novo assemblies of the transcriptomes of both a clonal line of symbiotic anemones and their endogenous dinoflagellate symbionts. We then compared transcript abundances in animals with and without dinoflagellates. This analysis identified >900 differentially expressed genes and allowed us to generate testable hypotheses about the cellular functions affected by symbiosis establishment. The differentially regulated transcripts include >60 encoding proteins that may play roles in transporting various nutrients between the symbiotic partners; many more encoding proteins functioning in several metabolic pathways, providing clues regarding how the transported nutrients may be used by the partners; and several encoding proteins that may be involved in host recognition and tolerance of the dinoflagellate. PMID:24368779

Linking Wave Forcing to Coral Cover and Structural Complexity Across Coral Reef Flats

NASA Astrophysics Data System (ADS)

Harris, D. L.; Rovere, A.; Parravicini, V.; Casella, E.

2015-12-01

The hydrodynamic regime is a significant component in the geomorphic and ecological development of coral reefs. The energy gradients and flow conditions generated by the breaking and transformation of waves across coral reef crests and flats drive changes in geomorphic structure, and coral growth form and distribution. One of the key aspects in regulating the wave energy propagating across reef flats is the rugosity or roughness of the benthic substrate. Rugosity and structural complexity of coral reefs is also a key indicator of species diversity, ecological functioning, and reef health. However, the links between reef rugosity, coral species distribution and abundance, and hydrodynamic forcing are poorly understood. In this study we examine this relationship by using high resolution measurement of waves in the surf zone and coral reef benthic structure.Pressure transducers (logging at 4 Hz) were deployed in cross reef transects at two sites (Tiahura and Ha'apiti reef systems) in Moorea, French Polynesia with wave characteristics determined on a wave by wave basis. A one dimensional hydrodynamic model (XBeach) was calibrated from this data to determine wave processes on the reef flats under average conditions. Transects of the reef benthic structure were conducted using photographic analysis and the three dimensional reef surface was constructed using structure from motion procedures. From this analysis reef rugosity, changes in coral genus and growth form, and across reef shifts in benthic community were determined. The results show clear changes in benthic assemblages along wave energy gradients with some indication of threshold values of wave induced bed shear stress above which live coral cover was reduced. Reef rugosity was shown to be significantly along the cross-reef transect which has important implications for accurate assessment of wave dissipation across coral reef flats. Links between reef rugosity and coral genus were also observed and may indicate that some coral species are crucial in maintaining the structural diversity of coral reefs.

Mapping the Rainforest of the Sea: Global Coral Reef Maps for Global Conservation

NASA Technical Reports Server (NTRS)

Robinson, Julie A.

2006-01-01

Coral reefs are the center of marine biodiversity, yet are under threat with an estimated 60% of coral reef habitats considered at risk by the World Resources Institute. The location and extent of coral reefs in the world are the basic information required for resource management and as a baseline for monitoring change. A NASA sponsored partnership between remote sensing scientists, international agencies and NGOs, has developed a new generation of global reef maps based on data collected by satellites. The effort, dubbed the Millennium Coral Reef Map aims to develop new methods for wide distribution of voluminous satellite data of use to the conservation and management communities. We discuss the tradeoffs between remote sensing data sources, mapping objectives, and the needs for conservation and resource management. SeaWiFS data were used to produce a composite global shallow bathymetry map at 1 km resolution. Landsat 7/ETM+ data acquisition plans were modified to collect global reefs and new operational methods were designed to generate the firstever global coral reef geomorphology map. We discuss the challenges encountered to build these databases and in implementing the geospatial data distribution strategies. Conservation applications include a new assessment of the distribution of the world s marine protected areas (UNEPWCMC), improved spatial resolution in the Reefs at Risk analysis for the Caribbean (WRI), and a global basemap for the Census of Marine Life's OBIS database. The Millennium Coral Reef map and digital image archive will pay significant dividends for local and regional conservation projects around the globe. Complete details of the project are available at http://eol.jsc.nasa.gov/reefs.

Cambrian Series 3 carbonate platform of Korea dominated by microbial-sponge reefs

NASA Astrophysics Data System (ADS)

Hong, Jongsun; Lee, Jeong-Hyun; Choh, Suk-Joo; Lee, Dong-Jin

2016-07-01

Metazoans have been considered as negligible components of Cambrian Series 3 and Furongian microbial-dominated reefs, in contrast to their presence in earlier Terreneuvian-Cambrian Series 2 microbial-archaeocyath reefs. However, recent discoveries of sponges in Cambrian Series 3-Furongian reefs of Australia, China, Iran, USA, and Korea have raised question regarding their contribution in terms of carbonate platform development, which have never been assessed. This study examines Cambrian Series 3 deposits of the Daegi Formation, Korea to elucidate this question. The 100-m-thick middle part of the Daegi Formation is dominated by boundstone facies, which occupies 45% of the study interval, as well as bioclastic wackestone to packstone, bioclastic grainstone, and ooid packstone to grainstone facies. The Daegi reefs are primarily thrombolitic in composition, with 90% (n = 26/29) of the reefs containing an average of 9% sponges in aerial percentage calculated from thin sections. Lithistid sponges composed of peloidal fabrics, some desma spicules, and spicule networks commonly occupy the interstitial space in microbial clusters, are encrusted by mesoclots and Epiphyton, and are surrounded by micrite. Subordinate non-lithistid demosponges occur within clusters of microbial elements. The middle Daegi Formation can be largely subdivided into shoal environment dominated by grainstone to packstone facies and shallow subtidal platform interior environment located behind shoal with wackestone to packstone facies. The microbial-sponge reefs mainly developed around platform interior as patch reefs. The current study indicates that metazoans in the form of lithistid and non-lithistid demosponges are nearly ubiquitously incorporated in Daegi reefs and contributed greatly to the formation of microbial-sponge reefs as well as carbonate platform during the time. Study of these microbial-sponge reefs and their distribution within the carbonate platform may help us to understand how carbonate sedimentary environments responded to the extinction of archaeocyaths.

Coral reef complexes at an atypical windward platform margin: Late Quaternary, southeast Florida

USGS Publications Warehouse

Lidz, B.H.

2004-01-01

Major coral reef complexes rim many modern and ancient carbonate platforms. Their role in margin evolution is not fully understood, particularly when they border a margin atypical of the classic model. Classic windward margins are steeply inclined. The windward margin of southeast Florida is distinct with a very low-gradient slope and a shelf edge ringed with 30-m-high Quaternary outlier reefs on a shallow upper-slope terrace. A newly developed synthesis of temporally well-constrained geologic events is used with surface and subsurface seismic-reflection contours to construct morphogenetic models of four discontinuous reef-complex sequences. The models show uneven subsurface topography, upward and landward buildups, and a previously unreported, rapid, Holocene progradation. The terms backstepped reef-complex margin, backfilled prograded margin, and coalesced reef-complex margin are proposed for sections exhibiting suitable signatures in the stratigraphic record. The models have significant implications for interpretation of ancient analogues. The Florida record chronicles four kinds of geologic events. (1) Thirteen transgressions high enough for marine deposition occurred between ca. 325 ka and the present. Six gave rise to stratigraphically successive coral reef complexes between ca. 185 and ca. 77.8 ka. The seventh reef ecosystem is Holocene. (2) Two primary coral reef architectures built the outer shelf and margin, producing respective ridge-and-swale and reef-and-trough geometries of very different scales. (3) Massive outlier reefs developed on an upper-slope terrace between ca. 106.5 and ca. 80 ka and are inferred to contain corals that would date to highstands at ca. 140 and 125 ka. (4) Sea level remained below elevation of the shelf between ca. 77.8 and ca. 9.6 ka. ?? 2004 Geological Society of America.

Workshop on Biological Integrity of Coral Reefs August 21-22 ...

EPA Pesticide Factsheets

This report summarizes an EPA-sponsored workshop on coral reef biological integrity held at the Caribbean Coral Reef Institute in La Parguera, Puerto Rico on August 21-22, 2012. The goals of this workshop were to:• Identify key qualitative and quantitative ecological characteristics (reef attributes) that determine the condition of linear coral reefs inhabiting shallow waters (<12 m) in southwestern Puerto Rico.• Use those reef attributes to recommend categorical condition rankings for establishing a biological condition gradient.• Ascertain through expert consensus those reef attributes that characterize biological integrity (a natural, fully-functioning system of organisms and communities) for coral reefs. • Develop a conceptual, narrative model that describes how biological attributes of coral reefs change along a gradient of increasing anthropogenic stress.The workshop brought together scientists with expertise in coral reef taxonomic groups (e.g., stony corals, fishes, sponges, gorgonians, algae, seagrasses and macroinvertebrates), as well as community structure, organism condition, ecosystem function and ecosystem connectivity. The experts evaluated photos and videos from 12 stations collected during EPA Coral Reef surveys (2010 & 2011) from Puerto Rico on coral reefs exhibiting a wide range of conditions. The experts individually rated each station as to observed condition (“good”, “fair” or “poor”) and documented their rationale for

The Açu Reef morphology, distribution, and inter reef sedimentation on the outer shelf of the NE Brazil equatorial margin

NASA Astrophysics Data System (ADS)

do Nascimento Silva, Luzia Liniane; Gomes, Moab Praxedes; Vital, Helenice

2018-05-01

Submerged reefs, referred to as the Açu Reefs, have been newly observed on both sides of the Açu Incised Valley on the northeastern equatorial Brazilian outer shelf. This study aims to understand the roles of shelf physiography, its antecedent morphologies, and its inter reef sedimentation on the different development stages of the biogenic reef during last deglacial sea-level rise. The data sets consist of side-scan sonar imagery, one sparker seismic profile, 76 sediment samples, and underwater photography. Seven backscatter patterns (P1 to P7) were identified and associated with eleven sedimentary carbonate and siliciclastic facies. The inherited relief, the mouth of the paleo incised valley, and the interreef sediment distribution play major controls on the deglacial reef evolution. The reefs occur in a depth-limited 25-55 m water depth range and in a 6 km wide narrow zone of the outer shelf. The reefs crop out in a surface area over 100 km2 and occur as a series of NW-SE preferentially orientated ridges composed of three parallel ridge sets at 45, 35, and 25 m of water depth. The reefs form a series of individual, roughly linear ridges, tens of km in length, acting as barriers in addition to scattered reef mounds or knolls, averaging 4 m in height and grouped in small patches and aggregates. The reefs, currently limited at the transition between the photic and mesophotic zones, are thinly covered by red algae and scattered coral heads and sponges. Taking into account the established sea-level curves from the equatorial Brazilian northeastern shelf / Rochas Atoll and Barbados, the shelf physiography, and the shallow bedrock, the optimal conditions for reef development had to occur during a time interval (11-9 kyr BP) characterized by a slowdown of the outer shelf flooding, immediately following Meltwater Pulse-1B. This 2 kyr short interval provided unique conditions for remarkable reef backstepping into distinct parallel ridge sets. Furthermore, the Açu Reefs have trapped relict siliciclastic sediments within the three sets of reefs, west of the Açu Incised Valley and adjacent coasts. Lines evidence of easterly nearshore currents carried sediments from the old Açu Incised Valley and adjacent coasts. These incipiently drowned reefs influence the water circulation patterns of the modern shelf system, its carbonate sedimentation, and sediment transport. This study provides a new example of reef occurrence which might be more commonly observed on similar equatorial continental shelves.

Maximizing oyster-reef growth supports green infrastructure with accelerating sea-level rise

PubMed Central

Ridge, Justin T.; Rodriguez, Antonio B.; Joel Fodrie, F.; Lindquist, Niels L.; Brodeur, Michelle C.; Coleman, Sara E.; Grabowski, Jonathan H.; Theuerkauf, Ethan J.

2015-01-01

Within intertidal communities, aerial exposure (emergence during the tidal cycle) generates strong vertical zonation patterns with distinct growth boundaries regulated by physiological and external stressors. Forecasted accelerations in sea-level rise (SLR) will shift the position of these critical boundaries in ways we cannot yet fully predict, but landward migration will be impaired by coastal development, amplifying the importance of foundation species’ ability to maintain their position relative to rising sea levels via vertical growth. Here we show the effects of emergence on vertical oyster-reef growth by determining the conditions at which intertidal reefs thrive and the sharp boundaries where reefs fail, which shift with changes in sea level. We found that oyster reef growth is unimodal relative to emergence, with greatest growth rates occurring between 20–40% exposure, and zero-growth boundaries at 10% and 55% exposures. Notably, along the lower growth boundary (10%), increased rates of SLR would outpace reef accretion, thereby reducing the depth range of substrate suitable for reef maintenance and formation, and exacerbating habitat loss along developed shorelines. Our results identify where, within intertidal areas, constructed or natural oyster reefs will persist and function best as green infrastructure to enhance coastal resiliency under conditions of accelerating SLR. PMID:26442712

Satellite remote sensing reveals a positive impact of living oyster reefs on microalgal biofilm development

NASA Astrophysics Data System (ADS)

Echappé, Caroline; Gernez, Pierre; Méléder, Vona; Jesus, Bruno; Cognie, Bruno; Decottignies, Priscilla; Sabbe, Koen; Barillé, Laurent

2018-02-01

Satellite remote sensing (RS) is routinely used for the large-scale monitoring of microphytobenthos (MPB) biomass in intertidal mudflats and has greatly improved our knowledge of MPB spatio-temporal variability and its potential drivers. Processes operating on smaller scales however, such as the impact of benthic macrofauna on MPB development, to date remain underinvestigated. In this study, we analysed the influence of wild Crassostrea gigas oyster reefs on MPB biofilm development using multispectral RS. A 30-year time series (1985-2015) combining high-resolution (30 m) Landsat and SPOT data was built in order to explore the relationship between C. gigas reefs and MPB spatial distribution and seasonal dynamics, using the normalized difference vegetation index (NDVI). Emphasis was placed on the analysis of a before-after control-impact (BACI) experiment designed to assess the effect of oyster killing on the surrounding MPB biofilms. Our RS data reveal that the presence of oyster reefs positively affects MPB biofilm development. Analysis of the historical time series first showed the presence of persistent, highly concentrated MPB patches around oyster reefs. This observation was supported by the BACI experiment which showed that killing the oysters (while leaving the physical reef structure, i.e. oyster shells, intact) negatively affected both MPB biofilm biomass and spatial stability around the reef. As such, our results are consistent with the hypothesis of nutrient input as an explanation for the MPB growth-promoting effect of oysters, whereby organic and inorganic matter released through oyster excretion and biodeposition stimulates MPB biomass accumulation. MPB also showed marked seasonal variations in biomass and patch shape, size and degree of aggregation around the oyster reefs. Seasonal variations in biomass, with higher NDVI during spring and autumn, were consistent with those observed on broader scales in other European mudflats. Our study provides the first multi-sensor RS satellite evidence of the promoting and structuring effect of oyster reefs on MPB biofilms.

A Decision Support System for Ecosystem-Based Management of Tropical Coral Reef Environments

NASA Astrophysics Data System (ADS)

Muller-Karger, F. E.; Eakin, C.; Guild, L. S.; Nemani, R. R.; Hu, C.; Lynds, S. E.; Li, J.; Vega-Rodriguez, M.; Coral Reef Watch Decision Support System Team

2010-12-01

We review a new collaborative program established between the National Aeronautics and Space Administration (NASA) and the National Oceanic and Atmospheric Administration (NOAA) to augment the NOAA Coral Reef Watch decision-support system. NOAA has developed a Decision Support System (DSS) under the Coral Reef Watch (CRW) program to forecast environmental stress in coral reef ecosystems around the world. This DSS uses models and 50 km Advanced Very High Resolution Radiometer (AVHRR) to generate “HotSpot” and Degree Heating Week coral bleaching indices. These are used by scientists and resource managers around the world. These users, including National Marine Sanctuary managers, have expressed the need for higher spatial resolution tools to understand local issues. The project will develop a series of coral bleaching products at higher spatial resolution using Moderate Resolution Imaging Spectroradiometer (MODIS) and AVHRR data. We will generate and validate products at 1 km resolution for the Caribbean Sea and Gulf of Mexico, and test global assessments at 4 and 50 km. The project will also incorporate the Global Coral Reef Millennium Map, a 30-m resolution thematic classification of coral reefs developed by the NASA Landsat-7 Science Team, into the CRW. The Millennium Maps help understand the geomorphology of individual reefs around the world. The products will be available through the NOAA CRW and UNEP-WCMC web portals. The products will help users formulate policy options and management decisions. The augmented DSS has a global scope, yet it addresses the needs of local resource managers. The work complements efforts to map and monitor coral reef communities in the U.S. territories by NOAA, NASA, and the USGS, and is a contribution to international efforts in ecological forecasting of coral reefs under changing environments, coral reef research, resource management, and conservation. Acknowledgement: Funding is provided by the NASA Ecological Forecasting application area and by NOAA NESDIS.

Dredging in the Spratly Islands: Gaining Land but Losing Reefs.

PubMed

Mora, Camilo; Caldwell, Iain R; Birkeland, Charles; McManus, John W

2016-03-01

Coral reefs on remote islands and atolls are less exposed to direct human stressors but are becoming increasingly vulnerable because of their development for geopolitical and military purposes. Here we document dredging and filling activities by countries in the South China Sea, where building new islands and channels on atolls is leading to considerable losses of, and perhaps irreversible damages to, unique coral reef ecosystems. Preventing similar damage across other reefs in the region necessitates the urgent development of cooperative management of disputed territories in the South China Sea. We suggest using the Antarctic Treaty as a positive precedent for such international cooperation.

Dredging in the Spratly Islands: Gaining Land but Losing Reefs

PubMed Central

Mora, Camilo; Caldwell, Iain R.; Birkeland, Charles; McManus, John W.

2016-01-01

Coral reefs on remote islands and atolls are less exposed to direct human stressors but are becoming increasingly vulnerable because of their development for geopolitical and military purposes. Here we document dredging and filling activities by countries in the South China Sea, where building new islands and channels on atolls is leading to considerable losses of, and perhaps irreversible damages to, unique coral reef ecosystems. Preventing similar damage across other reefs in the region necessitates the urgent development of cooperative management of disputed territories in the South China Sea. We suggest using the Antarctic Treaty as a positive precedent for such international cooperation. PMID:27031949

Developing a Biological Condition Gradient for the Protection of Puerto Rico's Coral Reefs

EPA Science Inventory

We introduce the application of the Biological Condition Gradient (BCG) to coral reefs: a conceptual model that describes how biological attributes of coral reef ecosystems might change along a gradient of increasing anthropogenic stress. Under authority of the Clean Water Act, t...

SIMAC: development and implementation of a coral reef monitoring network in Colombia.

PubMed

Garzón-Ferreira, Jaime; Rodríguez-Ramírez, Alberto

2010-05-01

Significant coral reef decline has been observed in Colombia during the last three decades. However, due to the lack of monitoring activities, most of the information about health and changes was fragmentary or inadequate. To develop an expanded nation-wide reef-monitoring program, in 1998 INVEMAR (Instituto de Investigaciones Marinas y Costeras: "Colombian Institute of Marine and Coastal Research") designed and implemented SIMAC (Sistema Nacional de Monitorco de Arrecifes Coralinos en Colombia: "National Monitoring System of Coral Reefs in Colombia") with the participation of other institutions. By the end of 2003 the SIMAC network reached more than twice its initial size, covering ten reef areas (seven in the Caribbean and three in the Pacific), 63 reef sites and 263 permanent transects. SIMAC monitoring continued without interruption until 2008 and should persist in the long-term. The SIMAC has a large database and consists basically of water quality measurements (temperature, salinity, turbidity) and a yearly estimation of benthic reef cover, coral disease prevalence, gorgonian density, abundance of important mobile invertebrates, fish diversity and abundance of important fish species. A methods manual is available in the Internet. Data and results of SIMAC have been widely circulated through a summary report published annually since 2000 for the Colombian environmental agencies and the general public, as well as numerous national and international scientific papers and presentations at meetings. SIMAC information has contributed to support regional and global reef monitoring networks and databases (i.e. CARICOMP, GCRMN, ReefBase).

Stratigraphy and evolution of emerged Pleistocene reefs at the Red Sea coast of Sudan

NASA Astrophysics Data System (ADS)

Hamed, Basher; Bussert, Robert; Dominik, Wilhelm

2016-02-01

Emerged Pleistocene coral reefs constitute a prominent landform along the Red Sea coast of Sudan. They are well exposed with a thickness of up to 12 m and extend over a width of about 3 km parallel to the coastline. Four major reef units that represent different reef zones are distinguished. Unit 1 is located directly at the coastline and is assigned to the rock-reef rim, while unit 2 represents the reef-front zone. Unit 3 is attributed to the reef-flat zone and unit 4 to the back-reef zone. The stratigraphic position and age of the four units respectively the facies zones are based on field relationships and δ18O analysis. Results of δ18O analysis of coral, gastropod and bivalve samples were correlated to previous age dating of correlative reefs in Sudan and other parts of the Red Sea region. Estimation of reef ages was mainly based on δ18O values of the reef-front zone (unit 2) and the observed sedimentary succession of the reefs. δ18O values of two Porites coral samples from the reef-front zone strongly suggest equivalent ages of 120 and 122 ka that correspond to marine isotope stage MIS 5.5. Based on δ18O values and the field relationship to the reef-front zone, ages of reef-flat zone (unit 3) and back-reef zone (unit 4) could be assigned to MIS 9 and MIS 7 respectively. MIS 5.1 is suggested for the reef-rock rim (unit 1). The relationship of the reef zones to individual MIS might be explained by the predominance of a specific zone during a certain stage, while other facies were less well developed and/or later eroded by wave action. The reef unit most distal from the recent coastline formed during interglacial stage MIS 7, while former studies assign this unit to interglacial stage MIS 9. Unique flourishing, high diversity and excellent preservation of corals in the back-reef unit of MIS 7 reflect growth in troughs landward of the oldest reef-flat formed during previous interglacial stage MIS 9.

Coral reefs and the World Bank.

PubMed

Hatziolos, M

1997-01-01

The World Bank¿s involvement in coral reef conservation is part of a larger effort to promote the sound management of coastal and marine resources. This involves three major thrusts: partnerships, investments, networks and knowledge. As an initial partner and early supporter of the International Coral Reef Initiative (ICRI), the Bank serves as the executive planning committee of ICRI. In partnership with the World Conservation Union and the Great Barrier Reef Marine Park Authority, the Bank promotes the efforts towards the establishment and maintenance of a globally representative system of marine protected areas. In addition, the Bank invested over $120 million in coral reef rehabilitation and protection programs in several countries. Furthermore, the Bank developed a ¿Knowledge Bank¿ that would market ideas and knowledge to its clients along with investment projects. This aimed to put the best global knowledge on environmentally sustainable development in the hands of its staff and clients. During the celebration of 1997, as the International Year of the Reef, the Bank planned to cosponsor an associated event that would highlight the significance of coral reefs and encourage immediate action to halt their degradation to conserve this unique ecosystem.

Modern coral reefs of western Atlantic: new geological perspective

DOE Office of Scientific and Technical Information (OSTI.GOV)

MacIntyre, I.G.

1988-11-01

Contrary to popular belief of the late 1960s, western Atlantic Holocene reefs have a long history and are not feeble novice nearshore veneers that barely survived postglacial temperatures. Rather, the growth of these reefs kept pace with the rising seas of the Holocene transgression and their development was, for the most part, controlled by offshore wave-energy conditions and the relationship between changing sea levels and local shelf topography. Thus, the outer shelves of the eastern Caribbean in areas of high energy have relict reefs consisting predominantly of Acropora palmata, a robust shallow-water coral. The flooding of adjacent shelves during themore » postglacial transgression introduced stress conditions that terminated the growth of these reefs. When, about 7000 yr ago, shelf-water conditions improved, scattered deeper water coral communities reestablished themselves on these stranded shelf-edge reefs, and fringing and bank-barrier reefs began to flourish in shallow coastal areas. At the same time, the fragile and rapidly growing Acropora cervicornis and other corals flourished at greater depths on the more protected shelves of the western Caribbean and the Gulf of Mexico. As a result, late Holocene buildups more than 30 m thick developed in those areas. 7 figures.« less

The effects of substratum material and surface orientation on the developing epibenthic community on a designed artificial reef.

PubMed

Ushiama, Shinjiro; Smith, James A; Suthers, Iain M; Lowry, Michael; Johnston, Emma L

2016-10-01

Artificial reefs provide shelter and can be an important source of food for fish depending on the epibenthic community on the structure. The growth and diversity of this community is influenced by the substratum material and the surface orientation of the reef. Settlement plates of four materials (Perspex, sandstone, wood and steel) were deployed in three orientations (upwards, downwards and vertical) at a depth of 33 m on a designed artificial reef (DAR) off the coast of Sydney, Australia. After three months, the steel surfaces had lower invertebrate species richness, total abundance and diversity compared to other surfaces. Steel was not an ideal material for the initial recruitment and growth of epibenthic invertebrates. A longer duration would be required to develop a mature epibenthic community. Surface orientation had species-specific impacts. Surface material and orientation are important factors for developing epibenthic assemblages, and are thus likely to affect the broader artificial reef assemblage, including fish.

Holocene reef development where wave energy reduces accommodation

USGS Publications Warehouse

Grossman, Eric E.; Fletcher, Charles H.

2004-01-01

Analyses of 32 drill cores obtained from the windward reef of Kailua Bay, Oahu, Hawaii, indicate that high wave energy significantly reduced accommodation space for reef development in the Holocene and produced variable architecture because of the combined influence of sea-level history and wave exposure over a complex antecedent topography. A paleostream valley within the late Pleistocene insular limestone shelf provided accommodation space for more than 11 m of vertical accretion since sea level flooded the bay 8000 yr BP. Virtually no net accretion (pile-up of fore-reef-derived rubble (rudstone) and sparse bindstone, and (3) a final stage of catch-up bindstone accretion in depths > 6 m. Coral framestone accreted at rates of 2.5-6.0 mm/yr in water depths > 11 m during the early Holocene; it abruptly terminated at ~4500 yr BP because of wave scour as sea level stabilized. More than 4 m of rudstone derived from the upper fore reef accreted at depths of 6 to 13 m below sea level between 4000 and 1500 yr BP coincident with late Holocene relative sea-level fall. Variations in the thickness, composition, and age of these reef facies across spatial scales of 10-1000 m within Kailua Bay illustrate the importance of antecedent topography and wave-related stress in reducing accommodation space for reef development set by sea level. Although accommodation space of 6 to 17 m has existed through most of the Holocene, the Kailua reef has been unable to catch up to sea level because of persistent high wave stress.

The impacts of tourism on coral reef conservation awareness and support in coastal communities in Belize

NASA Astrophysics Data System (ADS)

Diedrich, A.

2007-12-01

Marine recreational tourism is one of a number of threats to the Belize Barrier Reef but, conversely, represents both a motivation and source of resources for its conservation. The growth of tourism in Belize has resulted in the fact that many coastal communities are in varying stages of a socio-economic shift from dependence on fishing to dependence on tourism. In a nation becoming increasingly dependent on the health of its coral reef ecosystems for economic prosperity, a shift from extractive uses to their preservation is both necessary and logical. Through examining local perception data in five coastal communities in Belize, each attracting different levels of coral reef related tourism, this analysis is intended to explore the relationship between tourism development and local coral reef conservation awareness and support. The results of the analysis show a positive correlation between tourism development and coral reef conservation awareness and support in the study communities. The results also show a positive correlation between tourism development and local perceptions of quality of life, a trend that is most likely the source of the observed relationship between tourism and conservation. The study concludes that, because the observed relationship may be dependent on continued benefits from tourism as opposed to a perceived crisis in coral reef health, Belize must pay close attention to tourism impacts in the future. Failure to do this could result in a destructive feedback loop that would contribute to the degradation of the reef and, ultimately, Belize’s diminished competitiveness in the ecotourism market.

Oyster reefs can outpace sea-level rise

NASA Astrophysics Data System (ADS)

Rodriguez, Antonio B.; Fodrie, F. Joel; Ridge, Justin T.; Lindquist, Niels L.; Theuerkauf, Ethan J.; Coleman, Sara E.; Grabowski, Jonathan H.; Brodeur, Michelle C.; Gittman, Rachel K.; Keller, Danielle A.; Kenworthy, Matthew D.

2014-06-01

In the high-salinity seaward portions of estuaries, oysters seek refuge from predation, competition and disease in intertidal areas, but this sanctuary will be lost if vertical reef accretion cannot keep pace with sea-level rise (SLR). Oyster-reef abundance has already declined ~85% globally over the past 100 years, mainly from over harvesting, making any additional losses due to SLR cause for concern. Before any assessment of reef response to accelerated SLR can be made, direct measures of reef growth are necessary. Here, we present direct measurements of intertidal oyster-reef growth from cores and terrestrial lidar-derived digital elevation models. On the basis of our measurements collected within a mid-Atlantic estuary over a 15-year period, we developed a globally testable empirical model of intertidal oyster-reef accretion. We show that previous estimates of vertical reef growth, based on radiocarbon dates and bathymetric maps, may be greater than one order of magnitude too slow. The intertidal reefs we studied should be able to keep up with any future accelerated rate of SLR (ref. ) and may even benefit from the additional subaqueous space allowing extended vertical accretion.

Coastal Erosion in a Coral Reef Island, Taiping Island, South China Sea

NASA Astrophysics Data System (ADS)

Su, S.; Ma, G.; Liang, M.; Chu, J.

2011-12-01

Reef flats surrounding islands are known to dissipate much offshore wave energy, and thereby protect beaches from erosion. Taiping Island, the largest coral reef islands of the Spratly Islands in the South China Sea, has been observed the shorelines erosion on the southwest coast over past decades. It is recognized that wave and current processes across coral reefs affect reef-island development and morphology. A number of studies suggest effects of climate changes, sea-level rise and storm-intensity increase, determine the magnitude of wave energy on the reef platform and will likely intensify the erosion. The topographical change in the local region, the southwest reef flat was dredged a channel for navigation, may be a significant factor in influencing current characteristics. Numerical modeling is used to describe both hydrodynamics and sediment dynamics because there are no field measurements available around the reef flat. Field observations off the island conducted in August 2004 and November 2005 provides offshore wave characteristics of the predominant wind seasons. Numerical simulations perform the spatial and temporal variation of waves and current patterns and coastal erosion potential on the reef platform.

Subtropical Biotic Fringing Reefs as Ecological Laboratories.

ERIC Educational Resources Information Center

Hunt, Jeffrey W.

1980-01-01

Describes a 16-week course in marine biology involving a class-coordinated investigation of a subtropical biotic fringing reef of Hawaii. Describes in detail the development of preliminary hypotheses regarding general cause-effect relationships on the reef, and the exploration of specific areas, such as chemical or physical factors. (CS)

Ratings of Everyday Executive Functioning (REEF): A parent-report measure of preschoolers' executive functioning skills.

PubMed

Nilsen, Elizabeth S; Huyder, Vanessa; McAuley, Tara; Liebermann, Dana

2017-01-01

Executive functioning (EF) facilitates the development of academic, cognitive, and social-emotional skills and deficits in EF are implicated in a broad range of child psychopathologies. Although EF has clear implications for early development, the few questionnaires that assess EF in preschoolers tend to ask parents for global judgments of executive dysfunction and thus do not cover the full range of EF within the preschool age group. Here we present a new measure of preschoolers' EF-the Ratings of Everyday Executive Functioning (REEF)-that capitalizes on parents' observations of their preschoolers' (i.e., 3- to 5-year-olds) behavior in specific, everyday contexts. Over 4 studies, items comprising the REEF were refined and the measure's reliability and validity were evaluated. Factor analysis of the REEF yielded 1 factor, with items showing strong internal reliability. More important, children's scores on the REEF related to both laboratory measures of EF and another parent-report EF questionnaire. Moreover, reflecting divergent validity, the REEF was more strongly related to measures of EF as opposed to measures of affective styles. The REEF also captured differences in children's executive skills across the preschool years, and norms at 6-month intervals are reported. In summary, the REEF is a new parent-report measure that provides researchers with an efficient, valid, and reliable means of assessing preschoolers' executive functioning. (PsycINFO Database Record (c) 2016 APA, all rights reserved).

Oceanographic and behavioural assumptions in models of the fate of coral and coral reef fish larvae.

PubMed

Wolanski, Eric; Kingsford, Michael J

2014-09-06

A predictive model of the fate of coral reef fish larvae in a reef system is proposed that combines the oceanographic processes of advection and turbulent diffusion with the biological process of horizontal swimming controlled by olfactory and auditory cues within the timescales of larval development. In the model, auditory cues resulted in swimming towards the reefs when within hearing distance of the reef, whereas olfactory cues resulted in the larvae swimming towards the natal reef in open waters by swimming against the concentration gradients in the smell plume emanating from the natal reef. The model suggested that the self-seeding rate may be quite large, at least 20% for the larvae of rapidly developing reef fish species, which contrasted with a self-seeding rate less than 2% for non-swimming coral larvae. The predicted self-recruitment rate of reefs was sensitive to a number of parameters, such as the time at which the fish larvae reach post-flexion, the pelagic larval duration of the larvae, the horizontal turbulent diffusion coefficient in reefal waters and the horizontal swimming behaviour of the fish larvae in response to auditory and olfactory cues, for which better field data are needed. Thus, the model suggested that high self-seeding rates for reef fish are possible, even in areas where the 'sticky water' effect is minimal and in the absence of long-term trapping in oceanic fronts and/or large-scale oceanic eddies or filaments that are often argued to facilitate the return of the larvae after long periods of drifting at sea. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Coral Reef Resilience, Tipping Points and the Strength of Herbivory

PubMed Central

Holbrook, Sally J.; Schmitt, Russell J.; Adam, Thomas C.; Brooks, Andrew J.

2016-01-01

Coral reefs increasingly are undergoing transitions from coral to macroalgal dominance. Although the functional roles of reef herbivores in controlling algae are becoming better understood, identifying possible tipping points in the herbivory-macroalgae relationships has remained a challenge. Assessment of where any coral reef ecosystem lies in relation to the coral-to-macroalgae tipping point is fundamental to understanding resilience properties, forecasting state shifts, and developing effective management practices. We conducted a multi-year field experiment in Moorea, French Polynesia to estimate these properties. While we found a sharp herbivory threshold where macroalgae escape control, ambient levels of herbivory by reef fishes were well above that needed to prevent proliferation of macroalgae. These findings are consistent with previously observed high resilience of the fore reef in Moorea. Our approach can identify vulnerable coral reef systems in urgent need of management action to both forestall shifts to macroalgae and preserve properties essential for resilience. PMID:27804977

Embracing a world of subtlety and nuance on coral reefs

NASA Astrophysics Data System (ADS)

Mumby, Peter J.

2017-09-01

Climate change will homogenise the environment and generate a preponderance of mediocre reefs. Managing seascapes of mediocrity will be challenging because our science is ill prepared to deal with the `shades of grey' of reef health; we tend to study natural processes in the healthiest reefs available. Yet much can be gained by examining the drivers and implications of even subtle changes in reef state. Where strong ecological interactions are discovered, even small changes in abundance can have profound impacts on coral resilience. Indeed, if we are to develop effective early warnings of critical losses of resilience, then monitoring must place greater emphasis on measuring and interpreting changes in reef recovery rates. In terms of mechanism, a more nuanced approach is needed to explore the generality of what might be considered `dogma'. A more nuanced approach to science will serve managers needs well and help minimise the rise of mediocrity in coral reef ecosystems.

Coral Reef Resilience, Tipping Points and the Strength of Herbivory.

PubMed

Holbrook, Sally J; Schmitt, Russell J; Adam, Thomas C; Brooks, Andrew J

2016-11-02

Coral reefs increasingly are undergoing transitions from coral to macroalgal dominance. Although the functional roles of reef herbivores in controlling algae are becoming better understood, identifying possible tipping points in the herbivory-macroalgae relationships has remained a challenge. Assessment of where any coral reef ecosystem lies in relation to the coral-to-macroalgae tipping point is fundamental to understanding resilience properties, forecasting state shifts, and developing effective management practices. We conducted a multi-year field experiment in Moorea, French Polynesia to estimate these properties. While we found a sharp herbivory threshold where macroalgae escape control, ambient levels of herbivory by reef fishes were well above that needed to prevent proliferation of macroalgae. These findings are consistent with previously observed high resilience of the fore reef in Moorea. Our approach can identify vulnerable coral reef systems in urgent need of management action to both forestall shifts to macroalgae and preserve properties essential for resilience.

NOAA Coral Reef Watch: Decision Support Tools for Coral Reef Managers

NASA Astrophysics Data System (ADS)

Rauenzahn, J.; Eakin, C.; Skirving, W. J.; Burgess, T.; Christensen, T.; Heron, S. F.; Li, J.; Liu, G.; Morgan, J.; Nim, C.; Parker, B. A.; Strong, A. E.

2010-12-01

A multitude of natural and anthropogenic stressors exert substantial influence on coral reef ecosystems and contribute to bleaching events, slower coral growth, infectious disease outbreaks, and mortality. Satellite-based observations can monitor, at a global scale, environmental conditions that influence both short-term and long-term coral reef ecosystem health. From research to operations, NOAA Coral Reef Watch (CRW) incorporates paleoclimatic, in situ, and satellite-based biogeophysical data to provide near-real-time and forecast information and tools to help managers, researchers, and other stakeholders interpret coral health and stress. CRW has developed an operational, near-real-time product suite that includes sea surface temperature (SST), SST time series data, SST anomaly charts, coral bleaching HotSpots, and Degree Heating Weeks (DHW). Bi-weekly global SST analyses are based on operational nighttime-only SST at 50-km resolution. CRW is working to develop high-resolution products to better address thermal stress on finer scales and is applying climate models to develop seasonal outlooks of coral bleaching. Automated Satellite Bleaching Alerts (SBAs), available at Virtual Stations worldwide, provide the only global early-warning system to notify managers of changing reef environmental conditions. Currently, CRW is collaborating with numerous domestic and international partners to develop new tools to address ocean acidification, infectious diseases of corals, combining light and temperature to detect coral photosystem stress, and other parameters.

EPA Field Manual for Coral Reef Assessments

EPA Science Inventory

The Water Quality Research Program (WQRP) supports development of coral reef biological criteria. Research is focused on developing methods and tools to support implementation of legally defensible biological standards for maintaining biological integrity, which is protected by ...

75 FR 54044 - Fisheries in the Western Pacific; Community Development Program Process

Federal Register 2010, 2011, 2012, 2013, 2014

2010-09-03

... result of FWS concerns associated with the Fishery Management Plan for Coral Reef Ecosystems of the... referenced 2002 agreement was limited in scope to the Coral Reef Ecosystems Fishery Management Plan and was... the fishing regulations for coral reef ecosystem species in national wildlife refuges from 50 CFR 600...

Relating Landscape Development Intensity to Coral Reef Condition in the Watersheds of St. Croix, U.S. Virgin Islands

EPA Science Inventory

Diagnosing the degree to which local landscape activities impact coral reef ecosystems and their ecological services is critically important to coastal and watershed decision-makers. We report, for the first time, a study that relates coral reef condition metrics to metrics of h...

Origin of Silurian reefs in the Alexander Terrane of southeastern Alaska

DOE Office of Scientific and Technical Information (OSTI.GOV)

Soja, C.M.

1991-04-01

Lower to Upper Silurian (upper Llandovery-Ludlow) limestones belonging to the Heceta Formation record several episodes of reef growth in the Alexander terrane of southeastern Alaska. As the oldest carbonates of wide-spread distribution in the region, the Heceta limestones represent the earliest development of a shallow-marine platform within the Alexander arc and the oldest foundation for reef evolution. These deposits provide important insights into the dynamic processes, styles, and bathymetry associated with reef growth in tectonically active oceanic islands. Massive stromatoporoids, corals, and red algae are preserved in fragmental rudstones and represent a fringing reef that formed at the seaward edgemore » of the incipient marine shelf. Accessory constituents in this reef include crinoids and the cyanobacterium Girvanella. Small biostromes were constructed by ramose corals and stromatoporoids on oncolitic substrates in backreef or lagoonal environments. These buildups were associated with low-diversity assemblages of brachiopods and with gastropods, amphiporids, calcareous algae and cyanobacteria. Microbial boundstones reflect the widespread encrustation of cyanobacteria and calcified microproblematica on shelly debris as stromatolitic mats that resulted in the development of a stromatactoid-bearing mud mound and a barrier reef complex. Epiphytaceans, other microbes, and aphrosalpingid sponges were the primary frame-builders of the barrier reefs. These buildups attained significant relief at the shelf margin and shed detritus as slumped blocks and debris flows into deep-water sites along the slope. The similarity of these stromatolitic-aphrosalpingid reefs to those from Siluro-Devonian strata of autochthonous southwestern Alaska suggests paleobiogeographic ties of the Alexander terrane to cratonal North America during the Silurian.« less

A record of recent change in terrestrial sedimentation in a coral-reef environment, La Parguera, Puerto Rico: a response to coastal development?

PubMed

Ryan, K E; Walsh, J P; Corbett, D R; Winter, A

2008-06-01

Increased sediment flux to the coastal ocean due to coastal development is considered a major threat to the viability of coral reefs. A change in the nature of sediment supply and storage has been identified in a variety of coastal settings, particularly in response to European colonization, but sedimentation around reefs has received less attention. This research examines the sedimentary record adjacent to a coastal village that has experienced considerable land-use change over the last few decades. Sediment cores were analyzed to characterize composition and sediment accumulation rates. Sedimentation rates decreased seaward across the shelf from 0.85 cm y(-1) in a nearshore bay to 0.19 cm y(-1) in a fore-reef setting. Data reflected a significant (up to 2x) increase over the last approximately 80 years in terrestrial sediment accumulating in the back-reef setting, suggesting greater terrestrial sediment flux to the area. Reef health has declined, and increased turbidity is believed to be an important impact, particularly when combined with additional stressors.

Project O.R.B (Operation Reef Ball): Creating Artificial Reefs, Educating the Community

NASA Astrophysics Data System (ADS)

Phipps, A.

2012-04-01

The Project O.R.B. (Operation Reef Ball) team at South Plantation High School's Everglades Restoration & Environmental Science Magnet Program is trying to help our ailing south Florida coral reefs by constructing, deploying, and monitoring designed artificial reefs. Students partnered with the Reef Ball Foundation, local concrete companies, state parks, Girl Scouts, Sea Scouts, local universities and environmental agencies to construct concrete reef balls, each weighing approximately 500 lbs (227 kg). Students then deployed two artificial reefs consisting of over 30 concrete reef balls in two sites previously permitted for artificial reef deployment. One artificial reef was placed approximately 1.5 miles (2.4 km) offshore of Golden Beach in Miami-Dade County with the assistance of Florida Atlantic University and their research vessel. A twin reef was deployed at the mouth of the river in Oleta River State Park in Miami. Monitoring and maintenance of the sites is ongoing with semi-annual reports due to the Reef Ball Foundation and DERM (Department of Environmental Resource Management) of Miami-Dade County. A second goal of Project O.R.B. is aligned with the Florida Local Action Strategy, the Southeast Florida Coral Reef Initiative, and the U.S. Coral Reef Task Force, all of which point out the importance of awareness and education as key components to the health of our coral reefs. Project O.R.B. team members developed and published an activity book targeting elementary school students. Outreach events incorporate cascade learning where high school students teach elementary and middle school students about various aspects of coral reefs through interactive "edu-tainment" modules. Attendees learn about water sampling, salinity, beach erosion, surface runoff, water cycle, ocean zones, anatomy of coral, human impact on corals, and characteristics of a well-designed artificial reef. Middle school students snorkel on the artificial reef to witness first-hand the success of this artificial reef. Over 3,000 students have been reached through the educational outreach endeavors of Project O.R.B. This successful STEM project models the benefits of partnerships with universities, local K-12 public schools and community conservation organizations and provides students with authentic learning experiences. Students are able to have a positive impact on their local coral reef environment, their peers and their community through this comprehensive service-learning project.

Coral Reef Color: Remote and In-Situ Imaging Spectroscopy of Reef Structure and Function

NASA Astrophysics Data System (ADS)

Hochberg, E. J.

2016-02-01

Coral reefs are threatened at local to global scales by a litany of anthropogenic impacts, including overfishing, coastal development, marine and watershed pollution, rising ocean temperatures, and ocean acidification. However, available data for the primary indicator of coral reef condition — proportional cover of living coral — are surprisingly sparse and show patterns that contradict the prevailing understanding of how environment impacts reef condition. Remote sensing is the only available tool for acquiring synoptic, uniform data on reef condition at regional to global scales. Discrimination between coral and other reef benthos relies on narrow wavebands afforded by imaging spectroscopy. The same spectral information allows non-invasive quantification of photosynthetic pigment composition, which shows unexpected phenological trends. There is also potential to link biodiversity with optical diversity, though there has been no effort in that direction. Imaging spectroscopy underlies the light-use efficiency model for reef primary production by quantifying light capture, which in turn indicates biochemical capacity for CO2 assimilation. Reef calcification is strongly correlated with primary production, suggesting the possibility for an optics-based model of that aspect of reef function, as well. By scaling these spectral models for use with remote sensing, we can vastly improve our understanding of reef structure, function, and overall condition across regional to global scales. By analyzing those remote sensing products against ancillary environmental data, we can construct secondary models to predict reef futures in the era of global change. This final point is the objective of CORAL (COral Reef Airborne Laboratory), a three-year project funded under NASA's Earth Venture Suborbital-2 program to investigate the relationship between coral reef condition at the ecosystem scale and various nominal biogeophysical forcing parameters.

Battelle developing reefs to ease habitat losses

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1993-04-01

Artificial reefs may be the answer to solving a worldwide problem of declining fish habitats, or they may only be good for creating fishing spots. Researchers at Battelle's Ocean Sciences Laboratory in Duxbury, Massachusetts, are studying artificial reefs in the Delaware River to determine if they are a solution to habitat losses in estuaries and coastal regions. [open quotes]Right now, we don't know if the fish are using the reefs simply as a grazing land, and then moving on, or if they're using the areas to colonize,[close quotes] said researcher Karen Foster. [open quotes]Ultimately, we hope to find they aremore » colonizing.[close quotes] In 1989, Battelle researchers placed 16 prefabricated concrete reefs 45 feet deep in Delaware Bay. The reefs were placed in clusters of four, and monitoring began the following year. The federal government ordered the reefs placed in the bay as a mitigation technique for fish habitat that was lost when the river was dredged for navigational purposes. Researchers examined the reefs twice last summer. It will take five years, Foster said, before researchers can determine if the reefs are increasing the fish population. Early tests show, however, the populations of mussels, sponges, corals, and anemones increased by up to 150 percent over an area of bay bottom where the reefs were placed. Divers take crustacean samples from the reefs, and fish are caught near the reefs for examination. Researchers dissect the fish stomachs and analyze the contents to determine if they have been feeding at the reefs. [open quotes]If we find blue mussels in the stomach of the fish, that's great because we know that blue mussels are growing on the reef,[close quotes] Foster said.« less

Coral Reef Color: Remote and In-Situ Imaging Spectroscopy of Reef Structure and Function

NASA Astrophysics Data System (ADS)

Hochberg, E. J.

2015-12-01

Coral reefs are threatened at local to global scales by a litany of anthropogenic impacts, including overfishing, coastal development, marine and watershed pollution, rising ocean temperatures, and ocean acidification. However, available data for the primary indicator of coral reef condition — proportional cover of living coral — are surprisingly sparse and show patterns that contradict the prevailing understanding of how environment impacts reef condition. Remote sensing is the only available tool for acquiring synoptic, uniform data on reef condition at regional to global scales. Discrimination between coral and other reef benthos relies on narrow wavebands afforded by imaging spectroscopy. The same spectral information allows non-invasive quantification of photosynthetic pigment composition, which shows unexpected phenological trends. There is also potential to link biodiversity with optical diversity, though there has been no effort in that direction. Imaging spectroscopy underlies the light-use efficiency model for reef primary production by quantifying light capture, which in turn indicates biochemical capacity for CO2 assimilation. Reef calcification is strongly correlated with primary production, suggesting the possibility for an optics-based model of that aspect of reef function, as well. By scaling these spectral models for use with remote sensing, we can vastly improve our understanding of reef structure, function, and overall condition across regional to global scales. By analyzing those remote sensing products against ancillary environmental data, we can construct secondary models to predict reef futures in the era of global change. This final point is the objective of CORAL (COral Reef Airborne Laboratory), a three-year project funded under NASA's Earth Venture Suborbital-2 program to investigate the relationship between coral reef condition at the ecosystem scale and various nominal biogeophysical forcing parameters.

A coral-algal phase shift in Mesoamerica not driven by changes in herbivorous fish abundance

PubMed Central

Fung, Tak; Garza-Pérez, Joaquín Rodrigo; Acosta-González, Gilberto; Bozec, Yves-Marie; Johnson, Craig R.

2017-01-01

Coral-algal phase shifts in which coral cover declines to low levels and is replaced by algae have often been documented on coral reefs worldwide. This has motivated coral reef management responses that include restriction and regulation of fishing, e.g. herbivorous fish species. However, there is evidence that eutrophication and sedimentation can be at least as important as a reduction in herbivory in causing phase shifts. These threats arise from coastal development leading to increased nutrient and sediment loads, which stimulate algal growth and negatively impact corals respectively. Here, we first present results of a dynamic process-based model demonstrating that in addition to overharvesting of herbivorous fish, bottom-up processes have the potential to precipitate coral-algal phase shifts on Mesoamerican reefs. We then provide an empirical example that exemplifies this on coral reefs off Mahahual in Mexico, where a shift from coral to algal dominance occurred over 14 years, during which there was little change in herbivore biomass but considerable development of tourist infrastructure. Our results indicate that coastal development can compromise the resilience of coral reefs and that watershed and coastal zone management together with the maintenance of functional levels of fish herbivory are critical for the persistence of coral reefs in Mesoamerica. PMID:28445546

A coral-algal phase shift in Mesoamerica not driven by changes in herbivorous fish abundance.

PubMed

Arias-González, Jesús Ernesto; Fung, Tak; Seymour, Robert M; Garza-Pérez, Joaquín Rodrigo; Acosta-González, Gilberto; Bozec, Yves-Marie; Johnson, Craig R

2017-01-01

Coral-algal phase shifts in which coral cover declines to low levels and is replaced by algae have often been documented on coral reefs worldwide. This has motivated coral reef management responses that include restriction and regulation of fishing, e.g. herbivorous fish species. However, there is evidence that eutrophication and sedimentation can be at least as important as a reduction in herbivory in causing phase shifts. These threats arise from coastal development leading to increased nutrient and sediment loads, which stimulate algal growth and negatively impact corals respectively. Here, we first present results of a dynamic process-based model demonstrating that in addition to overharvesting of herbivorous fish, bottom-up processes have the potential to precipitate coral-algal phase shifts on Mesoamerican reefs. We then provide an empirical example that exemplifies this on coral reefs off Mahahual in Mexico, where a shift from coral to algal dominance occurred over 14 years, during which there was little change in herbivore biomass but considerable development of tourist infrastructure. Our results indicate that coastal development can compromise the resilience of coral reefs and that watershed and coastal zone management together with the maintenance of functional levels of fish herbivory are critical for the persistence of coral reefs in Mesoamerica.

A 3D seismic investigation of the Ray Gas Storage Reef in Macomb County, Michigan

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schaefer, S.F.; Dixon, R.A.

1995-09-01

A 4.2 square mile 3D seismic survey was acquired over the Ray Niagaran Reef Gas Storage Field in southeast Michigan as part of a program to maximize storage capacity and gas deliverability of the field. Goals of the survey were: (1) to determine if additional storage capacity could be found, either as extensions to the main reef or as undiscovered satellite reefs, (2) to determine if 3D seismic data can be utilized to quantify reservoir parameters in order to maximize the productive capacity of infill wells, and (3) to investigate the relationship between the main reef body and a lowmore » relief/flow volume gas well east of the reef. Interpretation of the 3D seismic data resulted in a detailed image of the reef, using several interpretive techniques. A seismic reflection within the reef was correlated with a known porosity zone, and the relationship between porosity and seismic amplitude was investigated. A possible connection between the main reef and the low relief gas well was identified. This project illustrates the economic value of investigating an existing storage reef with 3D seismic data, and underscores the necessity of acquiring such a survey prior to developing a new storage reservoir.« less

Modelling Coral Reef Futures to Inform Management: Can Reducing Local-Scale Stressors Conserve Reefs under Climate Change?

PubMed Central

Gurney, Georgina G.; Melbourne-Thomas, Jessica; Geronimo, Rollan C.; Aliño, Perry M.; Johnson, Craig R.

2013-01-01

Climate change has emerged as a principal threat to coral reefs, and is expected to exacerbate coral reef degradation caused by more localised stressors. Management of local stressors is widely advocated to bolster coral reef resilience, but the extent to which management of local stressors might affect future trajectories of reef state remains unclear. This is in part because of limited understanding of the cumulative impact of multiple stressors. Models are ideal tools to aid understanding of future reef state under alternative management and climatic scenarios, but to date few have been sufficiently developed to be useful as decision support tools for local management of coral reefs subject to multiple stressors. We used a simulation model of coral reefs to investigate the extent to which the management of local stressors (namely poor water quality and fishing) might influence future reef state under varying climatic scenarios relating to coral bleaching. We parameterised the model for Bolinao, the Philippines, and explored how simulation modelling can be used to provide decision support for local management. We found that management of water quality, and to a lesser extent fishing, can have a significant impact on future reef state, including coral recovery following bleaching-induced mortality. The stressors we examined interacted antagonistically to affect reef state, highlighting the importance of considering the combined impact of multiple stressors rather than considering them individually. Further, by providing explicit guidance for management of Bolinao's reef system, such as which course of management action will most likely to be effective over what time scales and at which sites, we demonstrated the utility of simulation models for supporting management. Aside from providing explicit guidance for management of Bolinao's reef system, our study offers insights which could inform reef management more broadly, as well as general understanding of reef systems. PMID:24260347

Modelling coral reef futures to inform management: can reducing local-scale stressors conserve reefs under climate change?

PubMed

Gurney, Georgina G; Melbourne-Thomas, Jessica; Geronimo, Rollan C; Aliño, Perry M; Johnson, Craig R

2013-01-01

Climate change has emerged as a principal threat to coral reefs, and is expected to exacerbate coral reef degradation caused by more localised stressors. Management of local stressors is widely advocated to bolster coral reef resilience, but the extent to which management of local stressors might affect future trajectories of reef state remains unclear. This is in part because of limited understanding of the cumulative impact of multiple stressors. Models are ideal tools to aid understanding of future reef state under alternative management and climatic scenarios, but to date few have been sufficiently developed to be useful as decision support tools for local management of coral reefs subject to multiple stressors. We used a simulation model of coral reefs to investigate the extent to which the management of local stressors (namely poor water quality and fishing) might influence future reef state under varying climatic scenarios relating to coral bleaching. We parameterised the model for Bolinao, the Philippines, and explored how simulation modelling can be used to provide decision support for local management. We found that management of water quality, and to a lesser extent fishing, can have a significant impact on future reef state, including coral recovery following bleaching-induced mortality. The stressors we examined interacted antagonistically to affect reef state, highlighting the importance of considering the combined impact of multiple stressors rather than considering them individually. Further, by providing explicit guidance for management of Bolinao's reef system, such as which course of management action will most likely to be effective over what time scales and at which sites, we demonstrated the utility of simulation models for supporting management. Aside from providing explicit guidance for management of Bolinao's reef system, our study offers insights which could inform reef management more broadly, as well as general understanding of reef systems.

Behavior of a wave-driven buoyant surface jet on a coral reef

USGS Publications Warehouse

Herdman, Liv; Hench, James L.; Fringer, Oliver; Monismith, Stephen G.

2017-01-01

A wave-driven surface buoyant jet exiting a coral reef was studied in order to quantify the amount of water re-entrained over the reef crest. Both moored observations and Lagrangian drifters were used to study the fate of the buoyant jet. To investigate in detail the effects of buoyancy and along-shore flow variations, we developed an idealized numerical model of the system. Consistent with previous work, the ratio of along-shore velocity to jet-velocity and the jet internal Froude number were found to be important determinants of the fate of the jet. In the absence of buoyancy, the entrainment of fluid at the reef crest, creates a significant amount of retention, keeping 60% of water in the reef system. However, when the jet is lighter than the ambient ocean-water, the net effect of buoyancy is to enhance the separation of the jet from shore, leading to a greater export of reef water. Matching observations, our modeling predicts that buoyancy limits retention to 30% of the jet flow for conditions existing on the Moorea reef. Overall, the combination of observations and modeling we present here shows that reef-ocean temperature gradients can play an important role in reef-ocean exchanges.

A 3-D seismic investigation of the Ray gas storage reef, Macomb County, Michigan

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schaefer, S.F.; Dixon, R.A.

1994-08-01

A 4.2 mi[sup 2] 3-D seismic survey was acquired over the Ray Niagaran reef gas storage field in southeast Michigan as part of a program to maximize storage capacity and gas deliverability of the storage reservoir. Goals of the survey were to (1) determine if additional storage capacity could be found either as extensions to the Ray reef or as undiscovered satellite reefs, (2) investigate the relationship between the main body and a low-relief gas well east of the reef, and (3) determine if seismic data can be used to quantify reservoir parameters to maximize the productive capacity of infillmore » wells. Interpretation of the 3-D seismic data resulted in a detailed image of the reef, using several interpretive techniques. A seismic reflection within the reef was correlated with a known porosity zone, and a possible relationship between porosity and seismic amplitude was investigated. A potential connection between the main reef and the low-relief gas well was identified. This project illustrates the economic value of investigating an existing storage reef with 3-D seismic data, and underscores the necessity of such a survey prior to developing a new storage reservoir.« less

Behavior of a wave-driven buoyant surface jet on a coral reef

NASA Astrophysics Data System (ADS)

Herdman, Liv M. M.; Hench, James L.; Fringer, Oliver; Monismith, Stephen G.

2017-05-01

A wave-driven surface-buoyant jet exiting a coral reef was studied in order to quantify the amount of water reentrained over the reef crest. Both moored observations and Lagrangian drifters were used to study the fate of the buoyant jet. To investigate in detail the effects of buoyancy and alongshore flow variations, we developed an idealized numerical model of the system. Consistent with previous work, the ratio of alongshore velocity to jet velocity and the jet internal Froude number were found to be important determinants of the fate of the jet. In the absence of buoyancy, the entrainment of fluid at the reef crest creates a significant amount of retention, keeping 60% of water in the reef system. However, when the jet is lighter than the ambient ocean water, the net effect of buoyancy is to enhance the separation of the jet from shore, leading to a greater export of reef water. Matching observations, our modeling predicts that buoyancy limits retention to 30% of the jet flow for conditions existing on the Moorea reef. Overall, the combination of observations and modeling we present here shows that reef-ocean temperature gradients can play an important role in reef-ocean exchanges.

Endozoicomonas genomes reveal functional adaptation and plasticity in bacterial strains symbiotically associated with diverse marine hosts

PubMed Central

Neave, Matthew J.; Michell, Craig T.; Apprill, Amy; Voolstra, Christian R.

2017-01-01

Endozoicomonas bacteria are globally distributed and often abundantly associated with diverse marine hosts including reef-building corals, yet their function remains unknown. In this study we generated novel Endozoicomonas genomes from single cells and metagenomes obtained directly from the corals Stylophora pistillata, Pocillopora verrucosa, and Acropora humilis. We then compared these culture-independent genomes to existing genomes of bacterial isolates acquired from a sponge, sea slug, and coral to examine the functional landscape of this enigmatic genus. Sequencing and analysis of single cells and metagenomes resulted in four novel genomes with 60–76% and 81–90% genome completeness, respectively. These data also confirmed that Endozoicomonas genomes are large and are not streamlined for an obligate endosymbiotic lifestyle, implying that they have free-living stages. All genomes show an enrichment of genes associated with carbon sugar transport and utilization and protein secretion, potentially indicating that Endozoicomonas contribute to the cycling of carbohydrates and the provision of proteins to their respective hosts. Importantly, besides these commonalities, the genomes showed evidence for differential functional specificity and diversification, including genes for the production of amino acids. Given this metabolic diversity of Endozoicomonas we propose that different genotypes play disparate roles and have diversified in concert with their hosts. PMID:28094347

The unnatural history of Kāne'ohe Bay: coral reef resilience in the face of centuries of anthropogenic impacts.

PubMed

Bahr, Keisha D; Jokiel, Paul L; Toonen, Robert J

2015-01-01

Kāne'ohe Bay, which is located on the on the NE coast of O'ahu, Hawai'i, represents one of the most intensively studied estuarine coral reef ecosystems in the world. Despite a long history of anthropogenic disturbance, from early settlement to post European contact, the coral reef ecosystem of Kāne'ohe Bay appears to be in better condition in comparison to other reefs around the world. The island of Moku o Lo'e (Coconut Island) in the southern region of the bay became home to the Hawai'i Institute of Marine Biology in 1947, where researchers have since documented the various aspects of the unique physical, chemical, and biological features of this coral reef ecosystem. The first human contact by voyaging Polynesians occurred at least 700 years ago. By A.D. 1250 Polynesians voyagers had settled inhabitable islands in the region which led to development of an intensive agricultural, fish pond and ocean resource system that supported a large human population. Anthropogenic disturbance initially involved clearing of land for agriculture, intentional or accidental introduction of alien species, modification of streams to supply water for taro culture, and construction of massive shoreline fish pond enclosures and extensive terraces in the valleys that were used for taro culture. The arrival by the first Europeans in 1778 led to further introductions of plants and animals that radically changed the landscape. Subsequent development of a plantation agricultural system led to increased human immigration, population growth and an end to traditional land and water management practices. The reefs were devastated by extensive dredge and fill operations as well as rapid growth of human population, which led to extensive urbanization of the watershed. By the 1960's the bay was severely impacted by increased sewage discharge along with increased sedimentation due to improper grading practices and stream channelization, resulting in extensive loss of coral cover. The reefs of Kāne'ohe Bay developed under estuarine conditions and thus have been subjected to multiple natural stresses. These include storm floods, a more extreme temperature range than more oceanic reefs, high rates of sedimentation, and exposure at extreme low tides. Deposition and degradation of organic materials carried into the bay from the watershed results in low pH conditions such that according to some ocean acidification projections the rich coral reefs in the bay should not exist. Increased global temperature due to anthropogenic fossil fuel emmisions is now impacting these reefs with the first "bleaching event" in 1996 and a second more severe event in 2014. The reefs of Kāne'ohe Bay have developed and persist under rather severe natural and anthropogenic perturbations. To date, these reefs have proved to be very resilient once the stressor has been removed. A major question remains to be answered concerning the limits of Kāne'ohe Bay reef resilience in the face of global climate change.

Monitoring Land Based Sources of Pollution over Coral Reefs using VIIRS Ocean Color Products

NASA Astrophysics Data System (ADS)

Geiger, E.; Strong, A. E.; Eakin, C. M.; Wang, M.; Hernandez, W. J.; Cardona Maldonado, M. A.; De La Cour, J. L.; Liu, G.; Tirak, K.; Heron, S. F.; Skirving, W. J.; Armstrong, R.; Warner, R. A.

2016-02-01

NOAA's Coral Reef Watch (CRW) program and the NESDIS Ocean Color Team are developing new products to monitor land based sources of pollution (LBSP) over coral reef ecosystems using the Visible Infrared Imaging Radiometer Suite (VIIRS) onboard the S-NPP satellite. LBSP are a major threat to corals that can cause disease and mortality, disrupt critical ecological reef functions, and impede growth, reproduction, and larval settlement, among other impacts. From VIIRS, near-real-time satellite products of Chlorophyll-a, Kd(490), and sea surface temperature are being developed for three U.S. Coral Reef Task Force priority watershed sites - Ka'anapali (West Maui, Hawai'i), Faga'alu (American Samoa), and Guánica Bay (Puerto Rico). Background climatological levels of these parameters are being developed to construct anomaly products. Time-series data are being generated to monitor changes in water quality in near-real-time and provide information on historical variations, especially following significant rain events. A pilot calibration/validation field study of the VIIRS-based ocean color products is underway in Puerto Rico; we plan to expand this validation effort to the other two watersheds. Working with local resource managers, we have identified a focal area for product development and validation for each watershed and its associated local reefs. This poster will present preliminary results and identify a path forward to ensure marine resource managers understand and correctly use the new ocean color products, and to help NOAA CRW refine its satellite products to maximize their benefit to coral reef management. NOAA - National Oceanic and Atmospheric Administration NESDIS - NOAA/National Environmental Satellite, Data, and Information Service S-NPP - Suomi National Polar-orbiting Partnership

A Biophysical Model for Hawaiian Coral Reefs: Coupling Local Ecology, Larval Transport and Climate Change

NASA Astrophysics Data System (ADS)

Kapur, M. R.

2016-02-01

Simulative models of reef ecosystems have been used to evaluate ecological responses to a myriad of disturbance events, including fishing pressure, coral bleaching, invasion by alien species, and nutrient loading. The Coral Reef Scenario Evaluation Tool (CORSET), has been developed and instantiated for both the Meso-American Reef (MAR) and South China Sea (SCS) regions. This model is novel in that it accounts for the many scales at which reef ecosystem processes take place; is comprised of a "bottom-up" structure wherein complex behaviors are not pre-programmed, but emergent and highly portable to new systems. Local-scale dynamics are coupled across regions through larval connectivity matrices, derived sophisticated particle transport simulations that include key elements of larval behavior. By this approach, we are able to directly evaluate some of the potential consequences of larval connectivity patterns across a range of spatial scales and under multiple climate scenarios. This work develops and applies the CORSET (Coral Reef Scenario Evaluation Tool) to the Main Hawaiian Islands under a suite of climate and ecological scenarios. We introduce an adaptation constant into reef-building coral dynamics to simulate observed resiliencies to bleaching events. This presentation will share results from the model's instantiation under two Resource Concentration Pathway climate scenarios, with emphasis upon larval connectivity dynamics, emergent coral tolerance to increasing thermal anomalies, and patterns of spatial fishing closures. Results suggest that under a business-as-usual scenario, thermal tolerance and herbivore removal will have synergistic effects on reef resilience.

Hurricanes, Coral Reefs and Rainforests: Resistance, Ruin and Recovery in the Caribbean

Treesearch

A. E. Lugo; C. S. Rogers; S. W Nixon

2000-01-01

The coexistence of hurricanes, coral reefs, and rainforests in the Caribbean demonstrates that highly structured ecosystems with great diversity can flourish in spite of recurring exposure to intense destructive energy. Coral reefs develop in response to wave energy and resist hurricanes largely by virtue of their structural strength. Limited fetch also protects some...

Effective Dispersal of Caribbean Reef Fish is Smaller than Current Spacing Among Marine Protected Areas.

PubMed

Beltrán, Diana M; Schizas, Nikolaos V; Appeldoorn, Richard S; Prada, Carlos

2017-07-05

The oceans are deteriorating at a fast pace. Conservation measures, such as Marine Protected Areas, are being implemented to relieve areas from local stressors and allow populations to restore to natural levels. Successful networks of MPAs operate if the space among MPAs is smaller than the dispersal capacity of the species under protection. We studied connectivity patterns across populations in a series of MPAs in the common yellowhead Jawfish, Opistognathus aurifrons. Using the power of genome-wide variation, we estimated that the maximum effective dispersal is 8.3 km. We found that MPAs exchange migrants likely via intermediate unprotected habitats through stepping stone dispersal. At scales >50 km such connectivity is decreased, particularly across the Mona Passage. The MPA network studied would be unable to maintain connectivity of these small benthic fishes if habitat in between them is extirpated. Our study highlights the power of SNPs to derive effective dispersal distance and the ability of SNPs to make inferences from single individuals. Given that overall reef fish diversity is driven by species with life histories similar to that of the yellowhead jawfish, managers face a challenge to develop strategies that allow connectivity and avoid isolation of populations and their possible extinction.

The role of the reef-dune system in coastal protection in Puerto Morelos (Mexico)

NASA Astrophysics Data System (ADS)

Franklin, Gemma L.; Torres-Freyermuth, Alec; Medellin, Gabriela; Allende-Arandia, María Eugenia; Appendini, Christian M.

2018-04-01

Reefs and sand dunes are critical morphological features providing natural coastal protection. Reefs dissipate around 90 % of the incident wave energy through wave breaking, whereas sand dunes provide the final natural barrier against coastal flooding. The storm impact on coastal areas with these features depends on the relative elevation of the extreme water levels with respect to the sand dune morphology. However, despite the importance of barrier reefs and dunes in coastal protection, poor management practices have degraded these ecosystems, increasing their vulnerability to coastal flooding. The present study aims to theoretically investigate the role of the reef-dune system in coastal protection under current climatic conditions at Puerto Morelos, located in the Mexican Caribbean Sea, using a widely validated nonlinear non-hydrostatic numerical model (SWASH). Wave hindcast information, tidal level, and a measured beach profile of the reef-dune system in Puerto Morelos are employed to estimate extreme runup and the storm impact scale for current and theoretical scenarios. The numerical results show the importance of including the storm surge when predicting extreme water levels and also show that ecosystem degradation has important implications for coastal protection against storms with return periods of less than 10 years. The latter highlights the importance of conservation of the system as a mitigation measure to decrease coastal vulnerability and infrastructure losses in coastal areas in the short to medium term. Furthermore, the results are used to evaluate the applicability of runup parameterisations for beaches to reef environments. Numerical analysis of runup dynamics suggests that runup parameterisations for reef environments can be improved by including the fore reef slope. Therefore, future research to develop runup parameterisations incorporating reef geometry features (e.g. reef crest elevation, reef lagoon width, fore reef slope) is warranted.

Dissolved inorganic carbon and total alkalinity of a Hawaiian fringing reef: chemical techniques for monitoring the effects of ocean acidification on coral reefs

NASA Astrophysics Data System (ADS)

Lantz, C. A.; Atkinson, M. J.; Winn, C. W.; Kahng, S. E.

2014-03-01

There is an interest in developing approaches to "ecosystem-based" management for coral reefs. One aspect of ecosystem performance is to monitor carbon metabolism of whole communities. In an effort to explore robust techniques to monitor the metabolism of fringing reefs, especially considering the possible effects of ocean acidification, a yearlong study of the carbonate chemistry of a nearshore fringing reef in Hawaii was conducted. Diurnal changes in seawater carbonate chemistry were measured once a week in an algal-dominated and a coral-dominated reef flat on the Waimanalo fringing reef, Hawaii, from April of 2010 until May of 2011. Calculated rates of gross primary production (GPP) and net community calcification ( G) were similar to previous estimates of community metabolism for other coral reefs (GPP 971 mmol C m-2 d-1; G 186 mmol CaCO3 m-2 d-1) and indicated that this reef was balanced in terms of organic metabolism, exhibited net calcification, and was a net source of CO2 to the atmosphere. Average slopes of total alkalinity versus dissolved inorganic carbon (TA-DIC slope) for the coral-dominated reef flat exhibited a greater calcification-to-net photosynthesis ratio than for the algal-dominated reef flat (coral slope vs. algal slope). Over the course of the time series, TA-DIC slopes remained significantly different between sites and were not correlated with diurnal averages in reef-water residence time or solar irradiance. These characteristic slopes for each reef flat reflect the relationship between carbon and carbonate community metabolism and can be used as a tool to monitor ecosystem function in response to ocean acidification.

A Restoration Suitability Index Model for the Eastern Oyster (Crassostrea virginica) in the Mission-Aransas Estuary, TX, USA

PubMed Central

Beseres Pollack, Jennifer; Cleveland, Andrew; Palmer, Terence A.; Reisinger, Anthony S.; Montagna, Paul A.

2012-01-01

Oyster reefs are one of the most threatened marine habitats on earth, with habitat loss resulting from water quality degradation, coastal development, destructive fishing practices, overfishing, and storm impacts. For successful and sustainable oyster reef restoration efforts, it is necessary to choose sites that support long-term growth and survival of oysters. Selection of suitable sites is critically important as it can greatly influence mortality factors and may largely determine the ultimate success of the restoration project. The application of Geographic Information Systems (GIS) provides an effective methodology for identifying suitable sites for oyster reef restoration and removes much of the uncertainty involved in the sometimes trial and error selection process. This approach also provides an objective and quantitative tool for planning future oyster reef restoration efforts. The aim of this study was to develop a restoration suitability index model and reef quality index model to characterize locations based on their potential for successful reef restoration within the Mission-Aransas Estuary, Texas, USA. The restoration suitability index model focuses on salinity, temperature, turbidity, dissolved oxygen, and depth, while the reef quality index model focuses on abundance of live oysters, dead shell, and spat. Size-specific Perkinsus marinus infection levels were mapped to illustrate general disease trends. This application was effective in identifying suitable sites for oyster reef restoration, is flexible in its use, and provides a mechanism for considering alternative approaches. The end product is a practical decision-support tool that can be used by coastal resource managers to improve oyster restoration efforts. As oyster reef restoration activities continue at small and large-scales, site selection criteria are critical for assisting stakeholders and managers and for maximizing long-term sustainability of oyster resources. PMID:22792410

The influence of sea-level rise on fringing reef sediment dynamics: field observations and numerical modeling

USGS Publications Warehouse

Storlazzi, Curt D.; Field, Michael E.; Elias, Edwin; Presto, M. Katherine

2011-01-01

While most climate projections suggest that sea level may rise on the order of 0.5-1.0 m by 2100, it is not clear how fluid flow and sediment transport on fringing reefs might change in response to this rapid sea-level rise. Field observations and numerical modeling suggest that an increase in water depth on the order of 0.5-1.0 m on a fringing reef flat would result in larger significant wave heights and wave-driven shear stresses, which, in turn, would result in an increase in both the size and quantity of sediment that can be resuspended from the seabed or eroded from coastal plain deposits. Greater wave- and wind-driven currents would develop on the reef flat with increasing water depth, increasing the offshore flux of water and sediment from the inner reef flat to the outer reef flat and fore reef where coral growth is typically greatest.

DEVELOPMENT AND IMPLEMENTATION OF CORAL REEF BIOCRITERIA IN U.S. JURISDICTIONS

EPA Science Inventory

U.S. coral reef ecosystems are threatened by a variety of anthropogenic activities (e.g., pollution, over fishing, vessel groundings, excess nutrients, coastal development, etc.), natural stressors (e.g., tropical storms), and natural stressors that have been exacerbated by anth...

Coral-macroalgal phase shifts or reef resilience: links with diversity and functional roles of herbivorous fishes on the Great Barrier Reef

NASA Astrophysics Data System (ADS)

Cheal, A. J.; MacNeil, M. Aaron; Cripps, E.; Emslie, M. J.; Jonker, M.; Schaffelke, B.; Sweatman, H.

2010-12-01

Changes from coral to macroalgal dominance following disturbances to corals symbolize the global degradation of coral reefs. The development of effective conservation measures depends on understanding the causes of such phase shifts. The prevailing view that coral-macroalgal phase shifts commonly occur due to insufficient grazing by fishes is based on correlation with overfishing and inferences from models and small-scale experiments rather than on long-term quantitative field studies of fish communities at affected and resilient sites. Consequently, the specific characteristics of herbivorous fish communities that most promote reef resilience under natural conditions are not known, though this information is critical for identifying vulnerable ecosystems. In this study, 11 years of field surveys recorded the development of the most persistent coral-macroalgal phase shift (>7 years) yet observed on Australia’s Great Barrier Reef (GBR). This shift followed extensive coral mortality caused by thermal stress (coral bleaching) and damaging storms. Comparisons with two similar reefs that suffered similar disturbances but recovered relatively rapidly demonstrated that the phase shift occurred despite high abundances of one herbivore functional group (scraping/excavating parrotfishes: Labridae). However, the shift was strongly associated with low fish herbivore diversity and low abundances of algal browsers (predominantly Siganidae) and grazers/detritivores (Acanthuridae), suggesting that one or more of these factors underpin reef resilience and so deserve particular protection. Herbivorous fishes are not harvested on the GBR, and the phase shift was not enhanced by unusually high nutrient levels. This shows that unexploited populations of herbivorous fishes cannot ensure reef resilience even under benign conditions and suggests that reefs could lose resilience under relatively low fishing pressure. Predictions of more severe and widespread coral mortality due to global climate change emphasize the need for more effective identification and protection of ecosystem components that are critical for the prevention of coral reef phase shifts.

Genetic markers for antioxidant capacity in a reef-building coral.

PubMed

Jin, Young K; Lundgren, Petra; Lutz, Adrian; Raina, Jean-Baptiste; Howells, Emily J; Paley, Allison S; Willis, Bette L; van Oppen, Madeleine J H

2016-05-01

The current lack of understanding of the genetic basis underlying environmental stress tolerance in reef-building corals impairs the development of new management approaches to confronting the global demise of coral reefs. On the Great Barrier Reef (GBR), an approximately 51% decline in coral cover occurred over the period 1985-2012. We conducted a gene-by-environment association analysis across 12° latitude on the GBR, as well as both in situ and laboratory genotype-by-phenotype association analyses. These analyses allowed us to identify alleles at two genetic loci that account for differences in environmental stress tolerance and antioxidant capacity in the common coral Acropora millepora. The effect size for antioxidant capacity was considerable and biologically relevant (32.5 and 14.6% for the two loci). Antioxidant capacity is a critical component of stress tolerance because a multitude of environmental stressors cause increased cellular levels of reactive oxygen species. Our findings provide the first step toward the development of novel coral reef management approaches, such as spatial mapping of stress tolerance for use in marine protected area design, identification of stress-tolerant colonies for assisted migration, and marker-assisted selective breeding to create more tolerant genotypes for restoration of denuded reefs.

First description of the neuro-anatomy of a larval coral reef fish Amphiprion ocellaris.

PubMed

Jacob, H; Metian, M; Brooker, R M; Duran, E; Nakamura, N; Roux, N; Masanet, P; Soulat, O; Lecchini, D

2016-09-01

The present study described the neuro-anatomy of a larval coral reef fish Amphiprion ocellaris and hypothesized that morphological changes during the transition from the oceanic environment to a reef environment (i.e. recruitment) have the potential to be driven by changes to environmental conditions and associated changes to cognitive requirements. Quantitative comparisons were made of the relative development of three specific brain areas (telencephalon, mesencephalon and cerebellum) between 6 days post-hatch (dph) larvae (oceanic phase) and 11 dph (at reef recruitment). The results showed that 6 dph larvae had at least two larger structures (telencephalon and mesencephalon) than 11 dph larvae, while the size of cerebellum remained identical. These results suggest that the structure and organization of the brain may reflect the cognitive demands at every stage of development. This study initiates analysis of the relationship between behavioural ecology and neuroscience in coral reef fishes. © 2016 The Fisheries Society of the British Isles.

Shelf stratigraphy and the influence of antecedent substrate on Holocene reef development, south Oahu, Hawaii

USGS Publications Warehouse

Grossman, E.E.; Barnhardt, W.A.; Hart, P.; Richmond, B.M.; Field, M.E.

2006-01-01

Paired analyses of drill cores and high-resolution seismic reflection data show that development of Holocene framework reefs on the Oahu (Hawaii) shelf is limited to settings of low wave energy and to the period 8000 to 3000 yr BP. A prominent bounding surface that is mapped across much of the Oahu shelf is an erosion surface cut into Marine Isotope Stages 5 and 7 limestones that show extensive loss of primary porosity, aragonite, and MgCO3 owing to meteoric and vadose-zone diagenesis. This acoustic reflector is found exposed at the surface where wave energy is high or in the shallow subsurface below Holocene reef and sand sheet deposits where energy is low. Ship-towed video along 30 km of the shelf reveals a steady decrease in limestone accumulation from offshore of Honolulu southeast to Koko Head where the seafloor is characterized by volcanic pavement and/or thin sand deposits. This may reflect the build-up of late Pleistocene volcanics associated with the Hanauma Bay eruption (30,000-7000 yr BP) that now comprise the substrate in depths shallow enough to limit reef accretion. The absence of significant Holocene reef build-up on the south Oahu shelf is consistent with observations from north-facing coasts that lack Holocene reefs, indicating that Holocene reef formation in Hawaii is complex and patchy.

Integrating structure-from-motion photogrammetry with geospatial software as a novel technique for quantifying 3D ecological characteristics of coral reefs

PubMed Central

Delparte, D; Gates, RD; Takabayashi, M

2015-01-01

The structural complexity of coral reefs plays a major role in the biodiversity, productivity, and overall functionality of reef ecosystems. Conventional metrics with 2-dimensional properties are inadequate for characterization of reef structural complexity. A 3-dimensional (3D) approach can better quantify topography, rugosity and other structural characteristics that play an important role in the ecology of coral reef communities. Structure-from-Motion (SfM) is an emerging low-cost photogrammetric method for high-resolution 3D topographic reconstruction. This study utilized SfM 3D reconstruction software tools to create textured mesh models of a reef at French Frigate Shoals, an atoll in the Northwestern Hawaiian Islands. The reconstructed orthophoto and digital elevation model were then integrated with geospatial software in order to quantify metrics pertaining to 3D complexity. The resulting data provided high-resolution physical properties of coral colonies that were then combined with live cover to accurately characterize the reef as a living structure. The 3D reconstruction of reef structure and complexity can be integrated with other physiological and ecological parameters in future research to develop reliable ecosystem models and improve capacity to monitor changes in the health and function of coral reef ecosystems. PMID:26207190

Local and Regional Impacts of Pollution on Coral Reefs along the Thousand Islands North of the Megacity Jakarta, Indonesia.

PubMed

Baum, Gunilla; Januar, Hedi I; Ferse, Sebastian C A; Kunzmann, Andreas

2015-01-01

Worldwide, coral reefs are challenged by multiple stressors due to growing urbanization, industrialization and coastal development. Coral reefs along the Thousand Islands off Jakarta, one of the largest megacities worldwide, have degraded dramatically over recent decades. The shift and decline in coral cover and composition has been extensively studied with a focus on large-scale gradients (i.e. regional drivers), however special focus on local drivers in shaping spatial community composition is still lacking. Here, the spatial impact of anthropogenic stressors on local and regional scales on coral reefs north of Jakarta was investigated. Results indicate that the direct impact of Jakarta is mainly restricted to inshore reefs, separating reefs in Jakarta Bay from reefs along the Thousand Islands further north. A spatial patchwork of differentially degraded reefs is present along the islands as a result of localized anthropogenic effects rather than regional gradients. Pollution is the main anthropogenic stressor, with over 80% of variation in benthic community composition driven by sedimentation rate, NO2, PO4 and Chlorophyll a. Thus, the spatial structure of reefs is directly related to intense anthropogenic pressure from local as well as regional sources. Therefore, improved spatial management that accounts for both local and regional stressors is needed for effective marine conservation.

Local and Regional Impacts of Pollution on Coral Reefs along the Thousand Islands North of the Megacity Jakarta, Indonesia

PubMed Central

Baum, Gunilla; Januar, Hedi I.; Ferse, Sebastian C. A.; Kunzmann, Andreas

2015-01-01

Worldwide, coral reefs are challenged by multiple stressors due to growing urbanization, industrialization and coastal development. Coral reefs along the Thousand Islands off Jakarta, one of the largest megacities worldwide, have degraded dramatically over recent decades. The shift and decline in coral cover and composition has been extensively studied with a focus on large-scale gradients (i.e. regional drivers), however special focus on local drivers in shaping spatial community composition is still lacking. Here, the spatial impact of anthropogenic stressors on local and regional scales on coral reefs north of Jakarta was investigated. Results indicate that the direct impact of Jakarta is mainly restricted to inshore reefs, separating reefs in Jakarta Bay from reefs along the Thousand Islands further north. A spatial patchwork of differentially degraded reefs is present along the islands as a result of localized anthropogenic effects rather than regional gradients. Pollution is the main anthropogenic stressor, with over 80% of variation in benthic community composition driven by sedimentation rate, NO2, PO4 and Chlorophyll a. Thus, the spatial structure of reefs is directly related to intense anthropogenic pressure from local as well as regional sources. Therefore, improved spatial management that accounts for both local and regional stressors is needed for effective marine conservation. PMID:26378910

Octocoral Species Assembly and Coexistence in Caribbean Coral Reefs.

PubMed

Velásquez, Johanna; Sánchez, Juan A

2015-01-01

What are the determinant factors of community assemblies in the most diverse ecosystem in the ocean? Coral reefs can be divided in continental (i.e., reefs that develop on the continental shelf, including siliciclastic reefs) and oceanic (i.e., far off the continental shelf, usually on volcanic substratum); whether or not these habitat differences impose community-wide ecological divergence or species exclusion/coexistence with evolutionary consequences, is unknown. Studying Caribbean octocorals as model system, we determined the phylogenetic community structure in a coral reef community, making emphasis on species coexistence evidenced on trait evolution and environmental feedbacks. Forty-nine species represented in five families constituted the species pool from which a phylogenetic tree was reconstructed using mtDNA. We included data from 11 localities in the Western Caribbean (Colombia) including most reef types. To test diversity-environment and phenotype-environment relationships, phylogenetic community structure and trait evolution we carried out comparative analyses implementing ecological and evolutionary approaches. Phylogenetic inferences suggest clustering of oceanic reefs (e.g., atolls) contrasting with phylogenetic overdispersion of continental reefs (e.g., reefs banks). Additionally, atolls and barrier reefs had the highest species diversity (Shannon index) whereas phylogenetic diversity was higher in reef banks. The discriminant component analysis supported this differentiation between oceanic and continental reefs, where continental octocoral species tend to have greater calyx apertures, thicker branches, prominent calyces and azooxanthellate species. This analysis also indicated a clear separation between the slope and the remaining habitats, caused by the presence or absence of Symbiodinium. K statistic analysis showed that this trait is conserved as well as the branch shape. There was strong octocoral community structure with opposite diversity and composition patterns between oceanic and continental reefs. Even habitats with similar depths and overall environmental conditions did not share similar communities between oceanic and continental reefs. This indicates a strong regional influence over the local communities, probably due to water transparency differences between major reef types, i.e., oceanic vs. continental shelf-neritic. This was supported by contrasting patterns found in morphology, composition and evolutionary history of the species between atolls and reef banks.

Octocoral Species Assembly and Coexistence in Caribbean Coral Reefs

PubMed Central

Velásquez, Johanna; Sánchez, Juan A.

2015-01-01

Background What are the determinant factors of community assemblies in the most diverse ecosystem in the ocean? Coral reefs can be divided in continental (i.e., reefs that develop on the continental shelf, including siliciclastic reefs) and oceanic (i.e., far off the continental shelf, usually on volcanic substratum); whether or not these habitat differences impose community-wide ecological divergence or species exclusion/coexistence with evolutionary consequences, is unknown. Methods Studying Caribbean octocorals as model system, we determined the phylogenetic community structure in a coral reef community, making emphasis on species coexistence evidenced on trait evolution and environmental feedbacks. Forty-nine species represented in five families constituted the species pool from which a phylogenetic tree was reconstructed using mtDNA. We included data from 11 localities in the Western Caribbean (Colombia) including most reef types. To test diversity-environment and phenotype-environment relationships, phylogenetic community structure and trait evolution we carried out comparative analyses implementing ecological and evolutionary approaches. Results Phylogenetic inferences suggest clustering of oceanic reefs (e.g., atolls) contrasting with phylogenetic overdispersion of continental reefs (e.g., reefs banks). Additionally, atolls and barrier reefs had the highest species diversity (Shannon index) whereas phylogenetic diversity was higher in reef banks. The discriminant component analysis supported this differentiation between oceanic and continental reefs, where continental octocoral species tend to have greater calyx apertures, thicker branches, prominent calyces and azooxanthellate species. This analysis also indicated a clear separation between the slope and the remaining habitats, caused by the presence or absence of Symbiodinium. K statistic analysis showed that this trait is conserved as well as the branch shape. Discussion There was strong octocoral community structure with opposite diversity and composition patterns between oceanic and continental reefs. Even habitats with similar depths and overall environmental conditions did not share similar communities between oceanic and continental reefs. This indicates a strong regional influence over the local communities, probably due to water transparency differences between major reef types, i.e., oceanic vs. continental shelf-neritic. This was supported by contrasting patterns found in morphology, composition and evolutionary history of the species between atolls and reef banks. PMID:26177191

Coral reef metabolism and carbon chemistry dynamics of a coral reef flat

NASA Astrophysics Data System (ADS)

Albright, Rebecca; Benthuysen, Jessica; Cantin, Neal; Caldeira, Ken; Anthony, Ken

2015-05-01

Global carbon emissions continue to acidify the oceans, motivating growing concern for the ability of coral reefs to maintain net positive calcification rates. Efforts to develop robust relationships between coral reef calcification and carbonate parameters such as aragonite saturation state (Ωarag) aim to facilitate meaningful predictions of how reef calcification will change in the face of ocean acidification. Here we investigate natural trends in carbonate chemistry of a coral reef flat over diel cycles and relate these trends to benthic carbon fluxes by quantifying net community calcification and net community production. We find that, despite an apparent dependence of calcification on Ωarag seen in a simple pairwise relationship, if the dependence of net calcification on net photosynthesis is accounted for, knowing Ωarag does not add substantial explanatory value. This suggests that, over short time scales, the control of Ωarag on net calcification is weak relative to factors governing net photosynthesis.

Towards an Ontology for Reef Islands

NASA Astrophysics Data System (ADS)

Duce, Stephanie

Reef islands are complex, dynamic and vulnerable environments with a diverse range of stake holders. Communication and data sharing between these different groups of stake holders is often difficult. An ontology for the reef island domain would improve the understanding of reef island geomorphology and improve communication between stake holders as well as forming a platform from which to move towards interoperability and the application of Information Technology to forecast and monitor these environments. This paper develops a small, prototypical reef island domain ontology, based on informal, natural language relations, aligned to the DOLCE upper-level ontology, for 20 fundamental terms within the domain. A subset of these terms and their relations are discussed in detail. This approach reveals and discusses challenges which must be overcome in the creation of a reef island domain ontology and which could be relevant to other ontologies in dynamic geospatial domains.

Century-scale records of land-based activities recorded in Mesoamerican coral cores.

PubMed

Carilli, Jessica E; Prouty, Nancy G; Hughen, Konrad A; Norris, Richard D

2009-12-01

The Mesoamerican Reef, the second-largest barrier reef in the world, is located in the western Caribbean Sea off the coasts of Mexico, Belize, Guatemala, and Honduras. Particularly in the south, the surrounding watersheds are steep and the climate is extremely wet. With development and agricultural expansion, the potential for negative impacts to the reef from land-based runoff becomes high. We constructed annually resolved century-scale records of metal/calcium ratios in coral skeletons collected from four sites experiencing a gradient of land-based runoff. Our proxy data indicate that runoff onto the reef has increased relatively steadily over time at all sites, consistent with land use trends from historical records. Sediment supply to the reef is greater in the south, and these more exposed reefs will probably benefit most immediately from management that targets runoff reduction. However, because runoff at all sites is steadily increasing, even distal sites will benefit from watershed management.

Assessing the effects of non-point source pollution on American Samoa's coral reef communities.

PubMed

Houk, Peter; Didonato, Guy; Iguel, John; Van Woesik, Robert

2005-08-01

Surveys were completed on Tutuila Island, American Samoa, to characterize reef development and assess the impacts of non-point source pollution on adjacent coral reefs at six sites. Multivariate analyses of benthic and coral community data found similar modern reef development at three locations; Aoa, Alofau, and Leone. These sites are situated in isolated bays with gentle sloping foundations. Aoa reefs had the highest estimates of crustose coralline algae cover and coral species richness, while Leone and Alofau showed high abundances of macroalgae and Porites corals. Aoa has the largest reef flat between watershed discharge and the reef slope, and the lowest human population density. Masefau and Fagaalu have a different geomorphology consisting of cemented staghorn coral fragments and steep slopes, however, benthic and coral communities were not similar. Benthic data suggest Fagaalu is heavily impacted compared with all other sites. Reef communities were assessed as bio-criteria indicators for waterbody health, using the EPA aquatic life use support designations of (1) fully supportive, (2) partially supportive, and (3) non-supportive for aquatic life. All sites resulted in a partially supportive ranking except Fagaalu, which was non-supportive. The results of this rapid assessment based upon relative benthic community measures are less desirable than long-term dataset analyses from monitoring programs, however it fills an important role for regulatory agencies required to report annual waterbody assessments. Future monitoring sites should be established to increase the number of replicates within each geological and physical setting to allow for meaningful comparisons along a gradient of hypothesized pollution levels.

Preliminary numerical simulation for shallow strata stability of coral reef in South China Sea

NASA Astrophysics Data System (ADS)

Tang, Qinqin; Zhan, Wenhuan; Zhang, Jinchang

2017-04-01

Coral reefs are the geologic material and special rock and soil, which live in shallow water of the tropic ocean and are formed through biological and geological action. Since infrastructure construction is being increasingly developed on coral reefs during recent years, it is necessary to evaluate the shallow strata stability of coral reefs in the South China Sea. The paper is to study the borehole profiles for shallow strata of coral reefs in the South China Sea, especially in the hydrodynamic marine environment?, and to establish a geological model for numerical simulation with Geo-Studio software. Five drilling holes show a six-layer shallow structure of South China Sea, including filling layer, mid-coarse sand, coral sand gravel, fine sand, limestone debris and reef limestone. The shallow coral reef profile next to lagoon is similar to "layers cake", in which the right side close to the sea is analogous to "block cake". The simulation results show that coral reef stability depends on wave loads and earthquake strength, as well as the physical properties of coral reefs themselves. The safety factor of the outer reef is greater than 10.0 in the static condition, indicating that outer reefs are less affected by the wave and earthquake. However, the safety factor next to lagoon is ranging from 0.1 to 4.9. The main reason for the variations that the strata of coral reefs close to the sea are thick. For example, the thickness of reef limestone is more than 10 m and equivalent to the block. When the thickness of inside strata is less than 10 m, they show weak engineering geological characteristics. These findings can provide useful information for coral reef constructions in future. This work was funded by National Basic Research Program of China (contract: 2013CB956104) and National Natural Science Foundation of China (contract: 41376063).

The unnatural history of Kāne‘ohe Bay: coral reef resilience in the face of centuries of anthropogenic impacts

PubMed Central

Jokiel, Paul L.; Toonen, Robert J.

2015-01-01

Kāneʻohe Bay, which is located on the on the NE coast of Oʻahu, Hawaiʻi, represents one of the most intensively studied estuarine coral reef ecosystems in the world. Despite a long history of anthropogenic disturbance, from early settlement to post European contact, the coral reef ecosystem of Kāneʻohe Bay appears to be in better condition in comparison to other reefs around the world. The island of Moku o Loʻe (Coconut Island) in the southern region of the bay became home to the Hawaiʻi Institute of Marine Biology in 1947, where researchers have since documented the various aspects of the unique physical, chemical, and biological features of this coral reef ecosystem. The first human contact by voyaging Polynesians occurred at least 700 years ago. By A.D. 1250 Polynesians voyagers had settled inhabitable islands in the region which led to development of an intensive agricultural, fish pond and ocean resource system that supported a large human population. Anthropogenic disturbance initially involved clearing of land for agriculture, intentional or accidental introduction of alien species, modification of streams to supply water for taro culture, and construction of massive shoreline fish pond enclosures and extensive terraces in the valleys that were used for taro culture. The arrival by the first Europeans in 1778 led to further introductions of plants and animals that radically changed the landscape. Subsequent development of a plantation agricultural system led to increased human immigration, population growth and an end to traditional land and water management practices. The reefs were devastated by extensive dredge and fill operations as well as rapid growth of human population, which led to extensive urbanization of the watershed. By the 1960’s the bay was severely impacted by increased sewage discharge along with increased sedimentation due to improper grading practices and stream channelization, resulting in extensive loss of coral cover. The reefs of Kāneʻohe Bay developed under estuarine conditions and thus have been subjected to multiple natural stresses. These include storm floods, a more extreme temperature range than more oceanic reefs, high rates of sedimentation, and exposure at extreme low tides. Deposition and degradation of organic materials carried into the bay from the watershed results in low pH conditions such that according to some ocean acidification projections the rich coral reefs in the bay should not exist. Increased global temperature due to anthropogenic fossil fuel emmisions is now impacting these reefs with the first “bleaching event” in 1996 and a second more severe event in 2014. The reefs of Kāneʻohe Bay have developed and persist under rather severe natural and anthropogenic perturbations. To date, these reefs have proved to be very resilient once the stressor has been removed. A major question remains to be answered concerning the limits of Kāneʻohe Bay reef resilience in the face of global climate change. PMID:26020007

Warming Trends and Bleaching Stress of the World’s Coral Reefs 1985-2012

NASA Astrophysics Data System (ADS)

Heron, Scott F.; Maynard, Jeffrey A.; van Hooidonk, Ruben; Eakin, C. Mark

2016-12-01

Coral reefs across the world’s oceans are in the midst of the longest bleaching event on record (from 2014 to at least 2016). As many of the world’s reefs are remote, there is limited information on how past thermal conditions have influenced reef composition and current stress responses. Using satellite temperature data for 1985-2012, the analysis we present is the first to quantify, for global reef locations, spatial variations in warming trends, thermal stress events and temperature variability at reef-scale (~4 km). Among over 60,000 reef pixels globally, 97% show positive SST trends during the study period with 60% warming significantly. Annual trends exceeded summertime trends at most locations. This indicates that the period of summer-like temperatures has become longer through the record, with a corresponding shortening of the ‘winter’ reprieve from warm temperatures. The frequency of bleaching-level thermal stress increased three-fold between 1985-91 and 2006-12 - a trend climate model projections suggest will continue. The thermal history data products developed enable needed studies relating thermal history to bleaching resistance and community composition. Such analyses can help identify reefs more resilient to thermal stress.

Last interglacial reef growth beneath Belize barrier and isolated platform reefs

USGS Publications Warehouse

Gischler, Eberhard; Lomando, Anthony J.; Hudson, J. Harold; Holmes, Charles W.

2000-01-01

We report the first radiometric dates (thermal-ionization mass spectrometry) from late Pleistocene reef deposits from offshore Belize, the location of the largest modern reef complex in the Atlantic Ocean. The results presented here can be used to explain significant differences in bathymetry, sedimentary facies, and reef development of this major reef area, and the results are significant because they contribute to the knowledge of the regional geology of the eastern Yucatán. The previously held concept of a neotectonically stable eastern Yucatán is challenged. The dates indicate that Pleistocene reefs and shallow-water limestones, which form the basement of modern reefs in the area, accumulated ca. 125–130 ka. Significant differences in elevation of the samples relative to present sea level (>10 m) have several possible causes. Differential subsidence along a series of continental margin fault blocks in combination with variation in karstification are probably the prime causes. Differential subsidence is presumably related to initial extension and later left-lateral movements along the adjacent active boundary between the North American and Caribbean plates. Increasing dissolution toward the south during Pleistocene sea-level lowstands is probably a consequence of higher precipitation rates in mountainous southern Belize.

Warming Trends and Bleaching Stress of the World’s Coral Reefs 1985–2012

PubMed Central

Heron, Scott F.; Maynard, Jeffrey A.; van Hooidonk, Ruben; Eakin, C. Mark

2016-01-01

Coral reefs across the world’s oceans are in the midst of the longest bleaching event on record (from 2014 to at least 2016). As many of the world’s reefs are remote, there is limited information on how past thermal conditions have influenced reef composition and current stress responses. Using satellite temperature data for 1985–2012, the analysis we present is the first to quantify, for global reef locations, spatial variations in warming trends, thermal stress events and temperature variability at reef-scale (~4 km). Among over 60,000 reef pixels globally, 97% show positive SST trends during the study period with 60% warming significantly. Annual trends exceeded summertime trends at most locations. This indicates that the period of summer-like temperatures has become longer through the record, with a corresponding shortening of the ‘winter’ reprieve from warm temperatures. The frequency of bleaching-level thermal stress increased three-fold between 1985–91 and 2006–12 – a trend climate model projections suggest will continue. The thermal history data products developed enable needed studies relating thermal history to bleaching resistance and community composition. Such analyses can help identify reefs more resilient to thermal stress. PMID:27922080

Warming Trends and Bleaching Stress of the World's Coral Reefs 1985-2012.

PubMed

Heron, Scott F; Maynard, Jeffrey A; van Hooidonk, Ruben; Eakin, C Mark

2016-12-06

Coral reefs across the world's oceans are in the midst of the longest bleaching event on record (from 2014 to at least 2016). As many of the world's reefs are remote, there is limited information on how past thermal conditions have influenced reef composition and current stress responses. Using satellite temperature data for 1985-2012, the analysis we present is the first to quantify, for global reef locations, spatial variations in warming trends, thermal stress events and temperature variability at reef-scale (~4 km). Among over 60,000 reef pixels globally, 97% show positive SST trends during the study period with 60% warming significantly. Annual trends exceeded summertime trends at most locations. This indicates that the period of summer-like temperatures has become longer through the record, with a corresponding shortening of the 'winter' reprieve from warm temperatures. The frequency of bleaching-level thermal stress increased three-fold between 1985-91 and 2006-12 - a trend climate model projections suggest will continue. The thermal history data products developed enable needed studies relating thermal history to bleaching resistance and community composition. Such analyses can help identify reefs more resilient to thermal stress.

Remote Sensing Tropical Coral Reefs: The View from Above

NASA Astrophysics Data System (ADS)

Purkis, Sam J.

2018-01-01

Carbonate precipitation has been a common life strategy for marine organisms for 3.7 billion years, as, therefore, has their construction of reefs. As favored by modern corals, reef-forming organisms have typically adopted a niche in warm, shallow, well-lit, tropical marine waters, where they are capable of building vast carbonate edifices. Because fossil reefs form water aquifers and hydrocarbon reservoirs, considerable effort has been dedicated to understanding their anatomy and morphology. Remote sensing has a particular role to play here. Interpretation of satellite images has done much to reveal the grand spatial and temporal tapestry of tropical reefs. Comparative sedimentology, whereby modern environments are contrasted with the rock record to improve interpretation, has been particularly transformed by observations made from orbit. Satellite mapping has also become a keystone technology to quantify the coral reef crisis—it can be deployed not only directly to quantify the distribution of coral communities, but also indirectly to establish a climatology for their physical environment. This article reviews the application of remote sensing to tropical coralgal reefs in order to communicate how this fast-growing technology might be central to addressing the coral reef crisis and to look ahead at future developments in the science.

Remote Sensing Tropical Coral Reefs: The View from Above.

PubMed

Purkis, Sam J

2018-01-03

Carbonate precipitation has been a common life strategy for marine organisms for 3.7 billion years, as, therefore, has their construction of reefs. As favored by modern corals, reef-forming organisms have typically adopted a niche in warm, shallow, well-lit, tropical marine waters, where they are capable of building vast carbonate edifices. Because fossil reefs form water aquifers and hydrocarbon reservoirs, considerable effort has been dedicated to understanding their anatomy and morphology. Remote sensing has a particular role to play here. Interpretation of satellite images has done much to reveal the grand spatial and temporal tapestry of tropical reefs. Comparative sedimentology, whereby modern environments are contrasted with the rock record to improve interpretation, has been particularly transformed by observations made from orbit. Satellite mapping has also become a keystone technology to quantify the coral reef crisis-it can be deployed not only directly to quantify the distribution of coral communities, but also indirectly to establish a climatology for their physical environment. This article reviews the application of remote sensing to tropical coralgal reefs in order to communicate how this fast-growing technology might be central to addressing the coral reef crisis and to look ahead at future developments in the science.

History of Indo-Pacific coral reef systems since the last glaciation: Development patterns and controlling factors

NASA Astrophysics Data System (ADS)

Montaggioni, Lucien F.

2005-06-01

A significant body of new information about the development of coral reefs during the last 23 ka has been generated in the last three decades. In the Indo-Pacific province, structures from a variety of geodynamic settings have been investigated using subsurface drilling and submersible diving. This paper is based principally on the re-examination of the core dataset from the literature, with reconversion of many previously published radiocarbon ages into calendar dates. Seven framework and three detrital facies were identified on the basis of the nature and growth shapes of dominant framework builders, and on that of the texture of sediments, respectively. Framework facies in high-hydrodynamic energy settings were dominated by an association of coralline algae and robust-branching corals ( Acropora robusta group, A. gr. humilis, A. palifera, Pocillopora damicornis) with locally encrusting coral forms (faviids). In moderate energy environments, these were replaced by domal ( Porites), tabular-branching ( Acropora gr. hyacinthus) and arborescent ( Acropora gr. muricata), whereas sheltered areas included an association of arborescent, foliaceous ( Montipora, Pavona) and encrusting coral species. Detrital facies comprise coral rubble, carbonate sand and mud. On compositional and textural bases, four main sand subfacies were recognized: coralgal rudstone to packstone; coral-molluscan grainstone/packstone; molluscan-foraminiferal grainstone/packstone; and green algal ( Halimeda) grainstone/packstone. Despite some overlaps in the sand facies association, each subfacies can provide additional support to reconstruction of paleoreef environments. Three types of framework facies association were identified within entire reef-margin sequences: framework of homogeneous composition reflecting stability of environmental conditions through time; superimposition of two distinct frameworks, usually as deeper water corals overlain by shallower, higher energy ones, and recurrent alternations of shallower and deeper coral assemblages. The two last associations resulted probably from lateral displacements of coral communities in response to rapid changes in accommodation space. Such facies transitions also are described from backreef sediment piles: gravel graded into sand and mud successively as a result of upward shallowing. The degree of reef development seems to be linked to coral community structure. Communities consisting principally of branching and domal coral forms favoured substantial accretion and the formation of well-developed reefs, whereas assemblages comprising foliaceous and encrusting colonies produced only incipient reefs. Within reef systems, the proportions of detritus over framework tend to increase as hydrodynamic energy declines. The Indo-Pacific reef systems are classified into four anatomy types on the basis of dominant depositional patterns: balanced aggrading/onlapping, unbalanced aggrading/downlapping, prograding and backstepping types. Vertical accretion rates of frameworks are highly variable and are not directly dictated by coral growth habits. However, the highest rates recorded (up to 20 mm year -1) relate to tabular- and arborescent-acroporid rich sections. Abrupt variations in the aggradation rates of framework are recorded in sequences at the transitional zone between two distinct coral assemblages. In detritus-dominated sequences, accumulation rates range from 0.2 to about 40 mm year -1, with higher values suggesting intense hurricane-controlled deposition. In addition, accretion rates also seem to depend on water-energy conditions. In high-energy environments, aggradation rates did not exceed 12 mm year -1, but reached 25 mm year -1 in more protected areas. By contrast, lateral accretion operated at an average rate of 90 mm year -1 in agitated waters, while it did not exceed the mean rate of 55 mm year -1 in calm waters. Changes in accretion rates appear to be linked to reef growth modes. In the reef zones driven by a "keep-up" mode, mean vertical accretion rates range at around 6 mm year -1. The reef zones developed through a "catch-up" mode at rates of 3-4 mm year -1. There was little variation in accretion rates according to latitude. At the Last Glacial Maximum, from 23 to about 19 ka BP, reefs (Reef Generation RGO) only developed along what were to become the foreslopes of present reefs, forming accumulations a few metres thick at vertical rates of up to 1 mm year -1. The rapid postglacial rise in sea level, from about 19 to 6.5 ka BP, was accompanied by the settlement of three successive reef generations (the so called RGI, RGII and RGIII), within the periods 17.5-14.7, 13.8-11.5 and 10 ka BP to the Present. During the Postglacial transgression, regional to local differences in gross morphology and internal architecture of the reefs have been determined by differing sea-level histories in combination with neotectonics and typographic factors. Locally, reef colonization seems to have been facilitated or prevented chiefly by small-scale topographic features. Development during subsequent deglaciation was probably largely independent of variations in sea surface temperatures. Water turbidity also seems to have been only a minor determinant of reef settlement and growth, but may locally have controlled the composition of coral communities, resulting in the growth of turbidity-tolerant domal and foliaceous forms. Changes in atmospheric CO 2 levels remained within the tolerance thresholds for reef calcification. The three main reef growth episodes coincide roughly with rapid increases in atmospheric pCO 2. Dust input and variations in sea surface salinities seem to have had a very limited control on reef growth. The LGM was characterized by salinities comparable with those of the present, but by higher dust fluxes. By contrast, nutrient levels, hydrodynamic energy, and to a lesser, extent coral recruitment in relation to substrate availability and ocean circulation, have played major roles in determining reef accretion patterns at both local and regional scales. Two periods of increased upwelling in the western Indian Ocean, at 15.3 and 11.5-10.8 ka BP, coincided with the demise of RGI and RGII. During deglaciation, high-frequency storm events probably led to a scarcity of typical growth framework reefs and favoured the formation of structures composed of reworked and recemented coral framework. Storm control may have been particularly important in the mid-Holocene when water depths over incipient reefs were greater than 5 m. From the LGM to the early Holocene, coral settlement has probably declined due to a lack of suitable nurseries, until the modern patterns of ocean circulation were established and thus favoured larval dispersal from refuges. It is highly desirable to improve analysis of the core database and to increase the number of core-transects, including forereef sites, to enhance our knowledge of Recent reef development.

Taking the metabolic pulse of the world's coral reefs.

PubMed

Cyronak, Tyler; Andersson, Andreas J; Langdon, Chris; Albright, Rebecca; Bates, Nicholas R; Caldeira, Ken; Carlton, Renee; Corredor, Jorge E; Dunbar, Rob B; Enochs, Ian; Erez, Jonathan; Eyre, Bradley D; Gattuso, Jean-Pierre; Gledhill, Dwight; Kayanne, Hajime; Kline, David I; Koweek, David A; Lantz, Coulson; Lazar, Boaz; Manzello, Derek; McMahon, Ashly; Meléndez, Melissa; Page, Heather N; Santos, Isaac R; Schulz, Kai G; Shaw, Emily; Silverman, Jacob; Suzuki, Atsushi; Teneva, Lida; Watanabe, Atsushi; Yamamoto, Shoji

2018-01-01

Worldwide, coral reef ecosystems are experiencing increasing pressure from a variety of anthropogenic perturbations including ocean warming and acidification, increased sedimentation, eutrophication, and overfishing, which could shift reefs to a condition of net calcium carbonate (CaCO3) dissolution and erosion. Herein, we determine the net calcification potential and the relative balance of net organic carbon metabolism (net community production; NCP) and net inorganic carbon metabolism (net community calcification; NCC) within 23 coral reef locations across the globe. In light of these results, we consider the suitability of using these two metrics developed from total alkalinity (TA) and dissolved inorganic carbon (DIC) measurements collected on different spatiotemporal scales to monitor coral reef biogeochemistry under anthropogenic change. All reefs in this study were net calcifying for the majority of observations as inferred from alkalinity depletion relative to offshore, although occasional observations of net dissolution occurred at most locations. However, reefs with lower net calcification potential (i.e., lower TA depletion) could shift towards net dissolution sooner than reefs with a higher potential. The percent influence of organic carbon fluxes on total changes in dissolved inorganic carbon (DIC) (i.e., NCP compared to the sum of NCP and NCC) ranged from 32% to 88% and reflected inherent biogeochemical differences between reefs. Reefs with the largest relative percentage of NCP experienced the largest variability in seawater pH for a given change in DIC, which is directly related to the reefs ability to elevate or suppress local pH relative to the open ocean. This work highlights the value of measuring coral reef carbonate chemistry when evaluating their susceptibility to ongoing global environmental change and offers a baseline from which to guide future conservation efforts aimed at preserving these valuable ecosystems.

Taking the metabolic pulse of the world’s coral reefs

PubMed Central

Andersson, Andreas J.; Langdon, Chris; Albright, Rebecca; Bates, Nicholas R.; Caldeira, Ken; Carlton, Renee; Corredor, Jorge E.; Dunbar, Rob B.; Enochs, Ian; Erez, Jonathan; Eyre, Bradley D.; Gattuso, Jean-Pierre; Gledhill, Dwight; Kayanne, Hajime; Kline, David I.; Koweek, David A.; Lantz, Coulson; Lazar, Boaz; Manzello, Derek; McMahon, Ashly; Meléndez, Melissa; Page, Heather N.; Santos, Isaac R.; Schulz, Kai G.; Shaw, Emily; Silverman, Jacob; Suzuki, Atsushi; Teneva, Lida; Watanabe, Atsushi; Yamamoto, Shoji

2018-01-01

Worldwide, coral reef ecosystems are experiencing increasing pressure from a variety of anthropogenic perturbations including ocean warming and acidification, increased sedimentation, eutrophication, and overfishing, which could shift reefs to a condition of net calcium carbonate (CaCO3) dissolution and erosion. Herein, we determine the net calcification potential and the relative balance of net organic carbon metabolism (net community production; NCP) and net inorganic carbon metabolism (net community calcification; NCC) within 23 coral reef locations across the globe. In light of these results, we consider the suitability of using these two metrics developed from total alkalinity (TA) and dissolved inorganic carbon (DIC) measurements collected on different spatiotemporal scales to monitor coral reef biogeochemistry under anthropogenic change. All reefs in this study were net calcifying for the majority of observations as inferred from alkalinity depletion relative to offshore, although occasional observations of net dissolution occurred at most locations. However, reefs with lower net calcification potential (i.e., lower TA depletion) could shift towards net dissolution sooner than reefs with a higher potential. The percent influence of organic carbon fluxes on total changes in dissolved inorganic carbon (DIC) (i.e., NCP compared to the sum of NCP and NCC) ranged from 32% to 88% and reflected inherent biogeochemical differences between reefs. Reefs with the largest relative percentage of NCP experienced the largest variability in seawater pH for a given change in DIC, which is directly related to the reefs ability to elevate or suppress local pH relative to the open ocean. This work highlights the value of measuring coral reef carbonate chemistry when evaluating their susceptibility to ongoing global environmental change and offers a baseline from which to guide future conservation efforts aimed at preserving these valuable ecosystems. PMID:29315312

Fine-scale environmental specialization of reef-building corals might be limiting reef recovery in the Florida Keys.

PubMed

Kenkel, Carly D; Almanza, Albert T; Matz, Mikhail V

2015-12-01

Despite decades of monitoring global reef decline, we are still largely unable to explain patterns of reef deterioration at local scales, which precludes the development of effective management strategies. Offshore reefs of the Florida Keys, USA, experience milder temperatures and lower nutrient loads in comparison to inshore reefs yet remain considerably more degraded than nearshore patch reefs. A year-long reciprocal transplant experiment of the mustard hill coral (Porites astreoides) involving four source and eight transplant locations reveals that corals adapt and/or acclimatize to their local habitat on a < 10-km scale. Surprisingly, transplantation to putatively similar environmental types (e.g., offshore corals moved to a novel offshore site, or along-shore transplantation) resulted in greater reductions in fitness proxies, such as coral growth, than cross-channel transplantation between inshore and offshore reefs. The only abiotic factor showing significantly greater differences between along-shore sites was daily temperature range extremes (rather than the absolute high or low temperatures reached), providing a possible explanation for this pattern. Offshore-origin corals exhibited significant growth reductions at sites with greater daily temperature ranges, which explained up to 39% of the variation in their mass gain. In contrast, daily temperature range explained at most 9% of growth variation in inshore-origin corals, suggesting that inshore corals are more tolerant of high-frequency temperature fluctuations. Finally, corals incur trade-offs when specializing to their native reef. Across reef locations the coefficient of selection against coral transplants was 0.07 ± 0.02 (mean ± SE). This selection against immigrants could hinder the ability of corals to recolonize devastated reefs, whether through assisted migration efforts or natural recruitment events, providing a unifying explanation for observed patterns of coral decline in this reef system.

Fragile Reefs of the Eastern Pacific: Does low Cementation Provide a Model for Reefs in a High CO2 World?

NASA Astrophysics Data System (ADS)

Manzello, D.; Kleypas, J.; Eakin, M.; Budd, D.

2007-05-01

Around the world, reefs will experience high pCO2, low pH, low carbonate concentrations, and low aragonite saturation state as atmospheric CO2 rises. Ocean carbon chemistry measurements show that eastern Pacific waters already exist at high pCO2 and low carbonate concentrations due to natural upwelling in the region. Because of the upwelling, this region may serve as a model for coral reef development under enhanced atmospheric CO2 and oceanic pCO2; that is, low coral growth, low secondary cementation, and high physical, chemical, and biological erosion. Reefs in the eastern Pacific Ocean are characterized by low biological diversity and relatively small size. Both past coring and recent analysis reveal that, while many reefs in the eastern Pacific are several thousand years old, they are fragile and lack significant cementation, even in the innermost, oldest structures. They are also extremely porous with high water throughflow. Without secondary cementation, branching coral frameworks are held together only by organically produced calcium carbonate (e.g. coralline algae), sponges, and other reef infauna, and contain a high proportion of loose sediments. The result is reef frameworks that are more susceptible to destruction from mechanical or biological erosion. The poorly cemented nature of eastern Pacific reefs is thus hypothesized to have been a factor in the severe bioerosion that occurred on these reefs after past bleaching events (1982-3, 1997-8). We will present data that indicate low rates of cementation and high rates of erosion on eastern Pacific coral reefs and will compare current carbonate chemistry in the eastern Pacific to model predictions of what reefs around the globe may experience in coming decades.

Expectations and Outcomes of Reserve Network Performance following Re-zoning of the Great Barrier Reef Marine Park.

PubMed

Emslie, Michael J; Logan, Murray; Williamson, David H; Ayling, Anthony M; MacNeil, M Aaron; Ceccarelli, Daniela; Cheal, Alistair J; Evans, Richard D; Johns, Kerryn A; Jonker, Michelle J; Miller, Ian R; Osborne, Kate; Russ, Garry R; Sweatman, Hugh P A

2015-04-20

Networks of no-take marine reserves (NTMRs) are widely advocated for preserving exploited fish stocks and for conserving biodiversity. We used underwater visual surveys of coral reef fish and benthic communities to quantify the short- to medium-term (5 to 30 years) ecological effects of the establishment of NTMRs within the Great Barrier Reef Marine Park (GBRMP). The density, mean length, and biomass of principal fishery species, coral trout (Plectropomus spp., Variola spp.), were consistently greater in NTMRs than on fished reefs over both the short and medium term. However, there were no clear or consistent differences in the structure of fish or benthic assemblages, non-target fish density, fish species richness, or coral cover between NTMR and fished reefs. There was no indication that the displacement and concentration of fishing effort reduced coral trout populations on fished reefs. A severe tropical cyclone impacted many survey reefs during the study, causing similar declines in coral cover and fish density on both NTMR and fished reefs. However, coral trout biomass declined only on fished reefs after the cyclone. The GBRMP is performing as expected in terms of the protection of fished stocks and biodiversity for a developed country in which fishing is not excessive and targets a narrow range of species. NTMRs cannot protect coral reefs directly from acute regional-scale disturbance but, after a strong tropical cyclone, impacted NTMR reefs supported higher biomass of key fishery-targeted species and so should provide valuable sources of larvae to enhance population recovery and long-term persistence. Copyright © 2015 Elsevier Ltd. All rights reserved.

Role of Sediments and Nutrients in the Condition of a Coral Reef Under Tourist Pressure: Akumal México.

NASA Astrophysics Data System (ADS)

Naranjo-Garcia, M. J.; Vadés Lozano, D. S.; Real-De-Leon, E.; Lopez-Aguiar, K.; Garza-Perez, J. R.

2014-12-01

Akumal, Mexico, was the first tourist resort in the Mexican Caribbean mainland, its highly developed coastal zone lies directly above the phreatic, and it is directly connected to the sub-littoral waters. Akumal is also known as a well-developed fringing coral reef, now in a critical condition. The main objective of this study was to explore the relationship between two of the main indicators of human pressure (nutrients and sedimentation, linked to coastal development and water run-offs) and the condition of the reef benthos, during a year. The sampling design used four transects perpendicular to shore, associated to different tourist and water run-off exposure, for a total of 12 stations distributed in three different reef zones (transition zone, shallow and deep spurs and grooves). Monthly samples were collected: water samples close to the reef lagoon drain channels and at bottom depth at each station, and sediment traps were recovered and replaced also at each station. Reef Benthos videotransects were recorded bi-monthly at each station to assess its condition. Macroalgae and filamentous algae dominate benthic cover (up to 50%), hard-coral cover ranges from 5-9%. Five coral-diseases were recorded, affecting 10.16% of the coral colonies: Caribbean Ciliate Infection, White Band, Purple Spots, White Spots and Yellow Band. The sedimentation rate -sr- ranged from 0.13 to 83.7 mg/cm2/day during the year; 86% of the samples had a sr ≤ 10 mg/cm2/day (reefs not stressed); 13% of the samples had a sr ranging from 10 to 50 mg/cm2/day (stressed reefs); and 1% of the samples were over the critical threshold (>50 mg/cm2/day). Dissolved Inorganic Nitrogen concentrations during the year were above those recorded previously in Caribbean reefs. The most abundant fraction was ammonium, surpassing both Mexican norms: For protection of aquatic life in coastal zones (0.01 mg/L), and the critical threshold for aquatic life (0.4 mg/L). These concentration limits are considered as drivers of eutrophication, one of the main established causes of reef degradation globally. High concentrations of ammonium and other nutrients have been linked to increases in algae cover and coral diseases incidence, and to decreases in rates of coral calcification, fertility, production and viability of coral larvae, and the associated diversity loss.

A restoration genetics guide for coral reef conservation.

PubMed

Baums, Iliana B

2008-06-01

Worldwide degradation of coral reef communities has prompted a surge in restoration efforts. They proceed largely without considering genetic factors because traditionally, coral populations have been regarded as open over large areas with little potential for local adaptation. Since, biophysical and molecular studies indicated that most populations are closed over shorter time and smaller spatial scales. Thus, it is justified to re-examine the potential for site adaptation in corals. There is ample evidence for differentiated populations, inbreeding, asexual reproduction and the occurrence of ecotypes, factors that may facilitate local adaptation. Discovery of widespread local adaptation would influence coral restoration projects mainly with regard to the physical and evolutionary distance from the source wild and/or captive bred propagules may be moved without causing a loss of fitness in the restored population. Proposed causes for loss of fitness as a result of (plant) restoration efforts include founder effects, genetic swamping, inbreeding and/or outbreeding depression. Direct evidence for any of these processes is scarce in reef corals due to a lack of model species that allow for testing over multiple generations and the separation of the relative contributions of algal symbionts and their coral hosts to the overall performance of the coral colony. This gap in our knowledge may be closed by employing novel population genetic and genomics approaches. The use of molecular tools may aid managers in the selection of appropriate propagule sources, guide spatial arrangement of transplants, and help in assessing the success of coral restoration projects by tracking the performance of transplants, thereby generating important data for future coral reef conservation and restoration projects.

Discovery of SCORs: Anciently derived, highly conserved gene-associated repeats in stony corals.

PubMed

Qiu, Huan; Zelzion, Ehud; Putnam, Hollie M; Gates, Ruth D; Wagner, Nicole E; Adams, Diane K; Bhattacharya, Debashish

2017-10-01

Stony coral (Scleractinia) genomes are still poorly explored and many questions remain about their evolution and contribution to the success and longevity of reefs. We analyzed transcriptome and genome data from Montipora capitata, Acropora digitifera, and transcriptome data from 20 other coral species. To our surprise, we found highly conserved, anciently derived, Scleractinia COral-specific Repeat families (SCORs) that are abundant in all the studied lineages. SCORs form complex secondary structures and are located in untranslated regions and introns, but most abundant in intergenic DNA. These repeat families have undergone frequent duplication and degradation, suggesting a 'boom and bust' cycle of invasion and loss. We speculate that due to their surprisingly high sequence identities across deeply diverged corals, physical association with genes, and dynamic evolution, SCORs might have adaptive functions in corals that need to be explored using population genomic and function-based approaches. Copyright © 2017 Elsevier Inc. All rights reserved.

An ArcGIS decision support tool for artificial reefs site selection (ArcGIS ARSS)

NASA Astrophysics Data System (ADS)

Stylianou, Stavros; Zodiatis, George

2017-04-01

Although the use and benefits of artificial reefs, both socio-economic and environmental, have been recognized with research and national development programmes worldwide their development is rarely subjected to a rigorous site selection process and the majority of the projects use the traditional (non-GIS) approach, based on trial and error mode. Recent studies have shown that the use of Geographic Information Systems, unlike to traditional methods, for the identification of suitable areas for artificial reefs siting seems to offer a number of distinct advantages minimizing possible errors, time and cost. A decision support tool (DSS) has been developed based on the existing knowledge, the multi-criteria decision analysis techniques and the GIS approach used in previous studies in order to help the stakeholders to identify the optimal locations for artificial reefs deployment on the basis of the physical, biological, oceanographic and socio-economic features of the sites. The tool provides to the users the ability to produce a final report with the results and suitability maps. The ArcGIS ARSS support tool runs within the existing ArcMap 10.2.x environment and for the development the VB .NET high level programming language has been used along with ArcObjects 10.2.x. Two local-scale case studies were conducted in order to test the application of the tool focusing on artificial reef siting. The results obtained from the case studies have shown that the tool can be successfully integrated within the site selection process in order to select objectively the optimal site for artificial reefs deployment.

Criteria for successful exploration for Miocene reef production in the Philippines

DOE Office of Scientific and Technical Information (OSTI.GOV)

Downey, M.W.

1990-06-01

An abundance of modern geologic, geophysical, and geochemical data has been provided to interested members of the petroleum industry by the Philippine government, in cooperation with the World Bank. These data have been analyzed to assess whether more, and larger, Miocene reef fields should be expected in the Philippines. In the past decade, exploration by Cities Service (OXY), Amoco, Alcorn, and others has resulted in the discovery of several small Miocene reef and Miocene sandstone oil fields in offshore Palawan. Phillips/Shell also made a significant gas discovery of about 750 bcf in a Palawan Miocene reef that is currently uneconomicmore » to develop given the water depth (1,090 ft) and distance from users. Miocene reefs are commonly buried within Miocene clastics, and, where these impinging clastics are porous, they allow pathways for hydrocarbons to leak from the Miocene reefs. Drape closure is an important positive factor in assessing seal risk for Philippine Miocene reefs. Source rocks to charge middle and upper Miocene reefs are typically restricted to lower Miocene horizons. Geothermal gradients are modest in much of the Philippine offshore, and only select areas provide sufficient burial to mature and expel significant hydrocarbons. It is predicted by the author that additional, larger, and highly profitable Miocene reef fields will be found by future explorers in areas where Miocene reefs have drape closure top seals and are adjacent to deeply buried Miocene source rocks.« less

[Effects of artificial reef construction to marine ecosystem services value: a case of Yang-Meikeng artificial reef region in Shenzhen].

PubMed

Qin, Chuan-xin; Chem, Pi-mao; Jia, Xiao-ping

2011-08-01

Based on the researches and statistic data of Yangmeikeng artificial reef region in Shenzhen in 2008 and by the method of ecosystem services value, this paper analyzed the effects of artificial reef construction in the region on the marine ecosystem services. After the artificial reef construction, the tourism service value in the region decreased from 87% to 42%, food supply service value increased from 7% to 27%, and the services value of raw material supply, climatic regulation, air quality regulation, water quality regulation, harmful organism and disease regulation, and knowledge expansion had a slight increase, as compared to the surrounding coastal areas. The total services value per unit area of Yangmeikeng artificial reef region in 2008 was 1714.7 x 10(4) yuan x km(-2), far higher than the mean services value of coastal marine ecosystem in the surrounding areas of Shenzhen and in the world. Artificial reef construction affected and altered the structure of regional marine ecosystem services value, and improved the regional ecosystem services value, being of significance for the rational exploitation and utilization of marine resources and the successful recovery of damaged marine eco-environment and fish resources. Utilizing the method of ecosystem services value to evaluate artificial reef construction region could better elucidate the benefits of artificial reef construction, effectively promote the development of our artificial reef construction, and improve the management of marine ecosystem.

Does herbivorous fish protection really improve coral reef resilience? A case study from new caledonia (South Pacific).

PubMed

Carassou, Laure; Léopold, Marc; Guillemot, Nicolas; Wantiez, Laurent; Kulbicki, Michel

2013-01-01

Parts of coral reefs from New Caledonia (South Pacific) were registered at the UNESCO World Heritage list in 2008. Management strategies aiming at preserving the exceptional ecological value of these reefs in the context of climate change are currently being considered. This study evaluates the appropriateness of an exclusive fishing ban of herbivorous fish as a strategy to enhance coral reef resilience to hurricanes and bleaching in the UNESCO-registered areas of New Caledonia. A two-phase approach was developed: 1) coral, macroalgal, and herbivorous fish communities were examined in four biotopes from 14 reefs submitted to different fishing pressures in New Caledonia, and 2) results from these analyses were challenged in the context of a global synthesis of the relationship between herbivorous fish protection, coral recovery and relative macroalgal development after hurricanes and bleaching. Analyses of New Caledonia data indicated that 1) current fishing pressure only slightly affected herbivorous fish communities in the country, and 2) coral and macroalgal covers remained unrelated, and macroalgal cover was not related to the biomass, density or diversity of macroalgae feeders, whatever the biotope or level of fishing pressure considered. At a global scale, we found no relationship between reef protection status, coral recovery and relative macroalgal development after major climatic events. These results suggest that an exclusive protection of herbivorous fish in New Caledonia is unlikely to improve coral reef resilience to large-scale climatic disturbances, especially in the lightly fished UNESCO-registered areas. More efforts towards the survey and regulation of major chronic stress factors such as mining are rather recommended. In the most heavily fished areas of the country, carnivorous fish and large targeted herbivores may however be monitored as part of a precautionary approach.

Dispersal capacity and genetic relatedness in Acropora cervicornis on the Florida Reef Tract

NASA Astrophysics Data System (ADS)

Drury, Crawford; Paris, Claire B.; Kourafalou, Vassiliki H.; Lirman, Diego

2018-06-01

Sexual reproduction in scleractinian corals is a critical component of species recovery, fostering population connectivity and enhancing genetic diveristy. The relative contribution of sexual reproduction to both connectivity and diversity in Acropora cervicornis may be variable due to this species' capacity to reproduce effectively by fragmentation. Using a biophysical model and genomic data in this threatened species, we construct potential connectivity pathways on the Florida Reef Tract (FRT) and compare them to inferred migration rates derived from next-generation sequencing, using a link and node-based approach. Larval connectivity on the FRT can be divided into two zones: the northern region, where most transport is unidirectional to the north with the Florida Current, and the southern region that is more dynamic and exhibits complex spatial patterns. These biophysical linkages are poorly correlated with genetic connectivity patterns, which resolve many reciprocal connections and suggest a less sparse network. These results are difficult to reconcile with genetic data which indicate that individual reefs are diverse, suggesting important contributions of sexual reproduction and recruitment. Larval connectivity models highlight potential resources for recovery, such as areas with high larval export like the Lower Keys, or areas that are well connected to most other regions on the FRT, such as the Dry Tortugas.

Excess seawater nutrients, enlarged algal symbiont densities and bleaching sensitive reef locations: 2. A regional-scale predictive model for the Great Barrier Reef, Australia.

PubMed

Wooldridge, Scott A; Heron, Scott F; Brodie, Jon E; Done, Terence J; Masiri, Itsara; Hinrichs, Saskia

2017-01-15

A spatial risk assessment model is developed for the Great Barrier Reef (GBR, Australia) that helps identify reef locations at higher or lower risk of coral bleaching in summer heat-wave conditions. The model confirms the considerable benefit of discriminating nutrient-enriched areas that contain corals with enlarged (suboptimal) symbiont densities for the purpose of identifying bleaching-sensitive reef locations. The benefit of the new system-level understanding is showcased in terms of: (i) improving early-warning forecasts of summer bleaching risk, (ii) explaining historical bleaching patterns, (iii) testing the bleaching-resistant quality of the current marine protected area (MPA) network (iv) identifying routinely monitored coral health attributes, such as the tissue energy reserves and skeletal growth characteristics (viz. density and extension rates) that correlate with bleaching resistant reef locations, and (v) targeting region-specific water quality improvement strategies that may increase reef-scale coral health and bleaching resistance. Crown Copyright © 2016. Published by Elsevier Ltd. All rights reserved.

Variability in reef connectivity in the Coral Triangle

NASA Astrophysics Data System (ADS)

Thompson, D. M.; Kleypas, J. A.; Castruccio, F. S.; Watson, J. R.; Curchitser, E. N.

2015-12-01

The Coral Triangle (CT) is not only the global center of marine biodiversity, it also supports the livelihoods of millions of people. Unfortunately, it is also considered the most threatened of all reef regions, with rising temperature and coral bleaching already taking a toll. Reproductive connectivity between reefs plays a critical role in the reef's capacity to recover after such disturbances. Thus, oceanographic modeling efforts to understand patterns of reef connectivity are essential to the effective design of a network of Marine Protected Areas (MPAs) to conserve marine ecosystems in the Coral Triangle. Here, we combine a Regional Ocean Modeling System developed for the Coral Triangle (CT-ROMS) with a Lagrangian particle tracking tool (TRACMASS) to investigate the probability of coral larval transport between reefs. A 47-year hindcast simulation (1960-2006) was used to investigate the variability in larval transport of a broadcasting coral following mass spawning events in April and September. Potential connectivity between reefs was highly variable and stochastic from year to year, emphasizing the importance of decadal or longer simulations in identifying connectivity patterns, key source and sink regions, and thus marine management targets for MPAs. The influence of temperature on realized connectivity (future work) may add further uncertainty to year-to-year patterns of connectivity between reefs. Nonetheless, the potential connectivity results we present here suggest that although reefs in this region are primarily self-seeded, rare long-distance dispersal may promote recovery and genetic exchange between reefs in the region. The spatial pattern of "subpopulations" based solely on the physical drivers of connectivity between reefs closely match regional patterns of biodiversity, suggesting that physical barriers to larval dispersal may be a key driver of reef biodiversity. Finally, 21st Century simulations driven by the Community Earth System Model (CESM) suggest that these major barriers to larval dispersal persist into the future under 8.5 W/m2 of climate forcing, despite some regional changes in connectivity between reefs.

Quantifying Climatological Ranges and Anomalies for Pacific Coral Reef Ecosystems

PubMed Central

Gove, Jamison M.; Williams, Gareth J.; McManus, Margaret A.; Heron, Scott F.; Sandin, Stuart A.; Vetter, Oliver J.; Foley, David G.

2013-01-01

Coral reef ecosystems are exposed to a range of environmental forcings that vary on daily to decadal time scales and across spatial scales spanning from reefs to archipelagos. Environmental variability is a major determinant of reef ecosystem structure and function, including coral reef extent and growth rates, and the abundance, diversity, and morphology of reef organisms. Proper characterization of environmental forcings on coral reef ecosystems is critical if we are to understand the dynamics and implications of abiotic–biotic interactions on reef ecosystems. This study combines high-resolution bathymetric information with remotely sensed sea surface temperature, chlorophyll-a and irradiance data, and modeled wave data to quantify environmental forcings on coral reefs. We present a methodological approach to develop spatially constrained, island- and atoll-scale metrics that quantify climatological range limits and anomalous environmental forcings across U.S. Pacific coral reef ecosystems. Our results indicate considerable spatial heterogeneity in climatological ranges and anomalies across 41 islands and atolls, with emergent spatial patterns specific to each environmental forcing. For example, wave energy was greatest at northern latitudes and generally decreased with latitude. In contrast, chlorophyll-a was greatest at reef ecosystems proximate to the equator and northern-most locations, showing little synchrony with latitude. In addition, we find that the reef ecosystems with the highest chlorophyll-a concentrations; Jarvis, Howland, Baker, Palmyra and Kingman are each uninhabited and are characterized by high hard coral cover and large numbers of predatory fishes. Finally, we find that scaling environmental data to the spatial footprint of individual islands and atolls is more likely to capture local environmental forcings, as chlorophyll-a concentrations decreased at relatively short distances (>7 km) from 85% of our study locations. These metrics will help identify reef ecosystems most exposed to environmental stress as well as systems that may be more resistant or resilient to future climate change. PMID:23637939

The dynamics of architectural complexity on coral reefs under climate change.

PubMed

Bozec, Yves-Marie; Alvarez-Filip, Lorenzo; Mumby, Peter J

2015-01-01

One striking feature of coral reef ecosystems is the complex benthic architecture which supports diverse and abundant fauna, particularly of reef fish. Reef-building corals are in decline worldwide, with a corresponding loss of live coral cover resulting in a loss of architectural complexity. Understanding the dynamics of the reef architecture is therefore important to envision the ability of corals to maintain functional habitats in an era of climate change. Here, we develop a mechanistic model of reef topographical complexity for contemporary Caribbean reefs. The model describes the dynamics of corals and other benthic taxa under climate-driven disturbances (hurricanes and coral bleaching). Corals have a simplified shape with explicit diameter and height, allowing species-specific calculation of their colony surface and volume. Growth and the mechanical (hurricanes) and biological erosion (parrotfish) of carbonate skeletons are important in driving the pace of extension/reduction in the upper reef surface, the net outcome being quantified by a simple surface roughness index (reef rugosity). The model accurately simulated the decadal changes of coral cover observed in Cozumel (Mexico) between 1984 and 2008, and provided a realistic hindcast of coral colony-scale (1-10 m) changing rugosity over the same period. We then projected future changes of Caribbean reef rugosity in response to global warming. Under severe and frequent thermal stress, the model predicted a dramatic loss of rugosity over the next two or three decades. Critically, reefs with managed parrotfish populations were able to delay the general loss of architectural complexity, as the benefits of grazing in maintaining living coral outweighed the bioerosion of dead coral skeletons. Overall, this model provides the first explicit projections of reef rugosity in a warming climate, and highlights the need of combining local (protecting and restoring high grazing) to global (mitigation of greenhouse gas emissions) interventions for the persistence of functional reef habitats. © 2014 John Wiley & Sons Ltd.

Quantifying climatological ranges and anomalies for Pacific coral reef ecosystems.

PubMed

Gove, Jamison M; Williams, Gareth J; McManus, Margaret A; Heron, Scott F; Sandin, Stuart A; Vetter, Oliver J; Foley, David G

2013-01-01

Coral reef ecosystems are exposed to a range of environmental forcings that vary on daily to decadal time scales and across spatial scales spanning from reefs to archipelagos. Environmental variability is a major determinant of reef ecosystem structure and function, including coral reef extent and growth rates, and the abundance, diversity, and morphology of reef organisms. Proper characterization of environmental forcings on coral reef ecosystems is critical if we are to understand the dynamics and implications of abiotic-biotic interactions on reef ecosystems. This study combines high-resolution bathymetric information with remotely sensed sea surface temperature, chlorophyll-a and irradiance data, and modeled wave data to quantify environmental forcings on coral reefs. We present a methodological approach to develop spatially constrained, island- and atoll-scale metrics that quantify climatological range limits and anomalous environmental forcings across U.S. Pacific coral reef ecosystems. Our results indicate considerable spatial heterogeneity in climatological ranges and anomalies across 41 islands and atolls, with emergent spatial patterns specific to each environmental forcing. For example, wave energy was greatest at northern latitudes and generally decreased with latitude. In contrast, chlorophyll-a was greatest at reef ecosystems proximate to the equator and northern-most locations, showing little synchrony with latitude. In addition, we find that the reef ecosystems with the highest chlorophyll-a concentrations; Jarvis, Howland, Baker, Palmyra and Kingman are each uninhabited and are characterized by high hard coral cover and large numbers of predatory fishes. Finally, we find that scaling environmental data to the spatial footprint of individual islands and atolls is more likely to capture local environmental forcings, as chlorophyll-a concentrations decreased at relatively short distances (>7 km) from 85% of our study locations. These metrics will help identify reef ecosystems most exposed to environmental stress as well as systems that may be more resistant or resilient to future climate change.

Taxonomic richness and abundance of cryptic peracarid crustaceans in the Puerto Morelos Reef National Park, Mexico

PubMed Central

Alvarez, Fernando

2017-01-01

Background and Aims Cryptic peracarids are an important component of the coral reef fauna in terms of diversity and abundance, yet they have been poorly studied. The aim of this study was to evaluate the taxonomic richness and abundance of cryptic peracarids in coral rubble in the Puerto Morelos Reef National Park, Mexico (PMRNP), and their relationship with depth. Methods Three reef sites were selected: (1) Bonanza, (2) Bocana, and (3) Jardines. At each site six kilograms of coral rubble were collected over four sampling periods at three depths: 3 m (back-reef), 6–8 m (fore-reef), and 10–12 m (fore-reef). Results A total of 8,887 peracarid crustaceans belonging to 200 taxa distributed over five orders and 63 families was obtained; 70% of the taxa were identified to species and 25% to genus level. Fifty species of those collected represent new records for the Mexican Caribbean Sea. Isopoda was the most speciose order while Tanaidacea was the most abundant. Discussion Cryptic peracarid taxonomic richness and abundance were related to depth with higher values of both parameters being found in the shallow (3 m) back-reef, possibly due to a higher reef development and a greater accumulation of coral rubble produced during hurricanes. Peracarid data obtained in the present study can be used as a baseline for future monitoring programs in the PMRNP. PMID:28630800

Variability in chemical defense across a shallow to mesophotic depth gradient in the Caribbean sponge Plakortis angulospiculatus

NASA Astrophysics Data System (ADS)

Slattery, Marc; Gochfeld, Deborah J.; Diaz, M. Cristina; Thacker, Robert W.; Lesser, Michael P.

2016-03-01

The transition between shallow and mesophotic coral reef communities in the tropics is characterized by a significant gradient in abiotic and biotic conditions that could result in potential trade-offs in energy allocation. The mesophotic reefs in the Bahamas and the Cayman Islands have a rich sponge fauna with significantly greater percent cover of sponges than in their respective shallow reef communities, but relatively low numbers of spongivores. Plakortis angulospiculatus, a common sponge species that spans the depth gradient from shallow to mesophotic reefs in the Caribbean, regenerates faster following predation and invests more energy in protein synthesis at mesophotic depths compared to shallow reef conspecifics. However, since P. angulospiculatus from mesophotic reefs typically contain lower concentrations of chemical feeding deterrents, they are not able to defend new tissue from predation as efficiently as conspecifics from shallow reefs. Nonetheless, following exposure to predators on shallow reefs, transplanted P. angulospiculatus from mesophotic depths developed chemical deterrence to predatory fishes. A survey of bioactive extracts indicated that a specific defensive metabolite, plakortide F, varied in concentration with depth, producing altered deterrence between shallow and mesophotic reef P. angulospiculatus. Different selective pressures in shallow and mesophotic habitats have resulted in phenotypic plasticity within this sponge species that is manifested in variable chemical defense and tissue regeneration at wound sites.

Building resilience into practical conservation: identifying local management responses to global climate change in the southern Great Barrier Reef

NASA Astrophysics Data System (ADS)

Maynard, J. A.; Marshall, P. A.; Johnson, J. E.; Harman, S.

2010-06-01

Climate change is now considered the greatest long-term threat to coral reefs, with some future change inevitable despite mitigation efforts. Managers must therefore focus on supporting the natural resilience of reefs, requiring that resilient reefs and reef regions be identified. We develop a framework for assessing resilience and trial it by applying the framework to target management responses to climate change on the southern Great Barrier Reef. The framework generates a resilience score for a site based on the evaluation of 19 differentially weighted indicators known or thought to confer resilience to coral reefs. Scores are summed, and sites within a region are ranked in terms of (1) their resilience relative to the other sites being assessed, and (2) the extent to which managers can influence their resilience. The framework was applied to 31 sites in Keppel Bay of the southern Great Barrier Reef, which has a long history of disturbance and recovery. Resilience and ‘management influence potential’ were both found to vary widely in Keppel Bay, informing site selection for the staged implementation of resilience-based management strategies. The assessment framework represents a step towards making the concept of resilience operational to reef managers and conservationists. Also, it is customisable, easy to teach and implement and effective in building support among local communities and stakeholders for management responses to climate change.

Earth Resources. A Continuing Bibliography with Indexes

DTIC Science & Technology

1987-11-01

Airborne microwave Doppler measurements of ocean of Guinea according to ground-based and satellite Coral reef remote sensing applications wave directional...understanding of internal Coral reef remote sensing applications an earth-to-satellite Hadamard transform laser long-path waves in the ocean p 20 A87-32951...classifications of coral reefs , and an are provided and new topographic features that are revealed are autocorrelation technique is being developed to

Testing a multi-tiered stress-gradient model for risk assessment using sediment constituents from coral reef environments

USGS Publications Warehouse

Lidz, B.H.; Hallock, P.; ,

2000-01-01

Coral reefs are threatened worldwide by stresses ranging from local to global in extent. One of the major challenges in studies of reef decline is understanding how to distinguish between changes resulting from natural, anthropogenic, local, and global environmental perturbations. As such, a conceptual risk-assessment model is developed that includes tiers for natural stresses, global/regional stresses, and local anthropogenic stresses.

Seismic evidence of glacial-age river incision into the Tahaa barrier reef, French Polynesia

USGS Publications Warehouse

Toomey, Michael; Woodruff, Jonathan D.; Ashton, Andrew D.; Perron, J. Taylor

2016-01-01

Rivers have long been recognized for their ability to shape reef-bound volcanic islands. On the time-scale of glacial–interglacial sea-level cycles, fluvial incision of exposed barrier reef lagoons may compete with constructional coral growth to shape the coastal geomorphology of ocean islands. However, overprinting of Pleistocene landscapes by Holocene erosion or sedimentation has largely obscured the role lowstand river incision may have played in developing the deep lagoons typical of modern barrier reefs. Here we use high-resolution seismic imagery and core stratigraphy to examine how erosion and/or deposition by upland drainage networks has shaped coastal morphology on Tahaa, a barrier reef-bound island located along the Society Islands hotspot chain in French Polynesia. At Tahaa, we find that many channels, incised into the lagoon floor during Pleistocene sea-level lowstands, are located near the mouths of upstream terrestrial drainages. Steeper antecedent topography appears to have enhanced lowstand fluvial erosion along Tahaa's southwestern coast and maintained a deep pass. During highstands, upland drainages appear to contribute little sediment to refilling accommodation space in the lagoon. Rather, the flushing of fine carbonate sediment out of incised fluvial channels by storms and currents appears to have limited lagoonal infilling and further reinforced development of deep barrier reef lagoons during periods of highstand submersion.

Where's the reef: the role of framework in the Holocene

USGS Publications Warehouse

Hubbard, D.K.; Burke, R.B.; Gill, I.P.

1998-01-01

Holocene reef models generally emphasize the role of in-place and interlocking framework in the creation of a rigid structure that rises above its surroundings. By extension, a number of ancient biohermal deposits have been disqualified as 'true reefs' owing to their lack of recognizable framework. Fifty-four cores from several eastern Caribbean sites clearly demonstrate that in-place and interlocking framework is not common in these reefs that are comprised of varying mixtures of recognizable coral (primary framework), loose sediment/rubble and secondary framework made up mostly of coralgal fragments bound together by submarine cementation and biological encrustation. Recvovery of primary and secondary framework ranged from 22% (avg.) in branching-coral facies to 33% in intervals dominated by head corals. Accretion rate decreases as expected with water depth. However, the recovery of recognizable coral generally increased with water depth, inversely to presumed coral-growth rates. This pattern reflects a spectrum in the relative importance of coral growth (primary construction), bioerosion, hydromechanical breakdown and the transport of sediment and detritus. The relative importance of each is controlled by the physical-oceanographic conditions at the stie of reef development and will dictate both the architecture and the character of its internal fabric. We do not propose that framework reeds do not exist, as they most assuredly do. However, the fact that so many modern reefs are not dominated by in-place and interlocking framework suggests that its use as the primary determinant of ancient reefs may be unreasonable. We, therefore, propose the abandonment of framework-based models in favor of those that treat framework generation, physical/biological degradation, sedimentation, and encrustation as equal partners in the development of modern and ancient reefs alike.

Monitoring Biogeochemical Processes in Coral Reef Environments with Remote Sensing: A Cross-Disciplinary Approach.

NASA Astrophysics Data System (ADS)

Perez, D.; Phinn, S. R.; Roelfsema, C. M.; Shaw, E. C.; Johnston, L.; Iguel, J.; Camacho, R.

2017-12-01

Primary production and calcification are important to measure and monitor over time, because of their fundamental roles in the carbon cycling and accretion of habitat structure for reef ecosystems. However, monitoring biogeochemical processes in coastal environments has been difficult due to complications in resolving differences in water optical properties from biological productivity and other sources (sediment, dissolved organics, etc.). This complicates application of algorithms developed for satellite image data from open ocean conditions, and requires alternative approaches. This project applied a cross-disciplinary approach, using established methods for monitoring productivity in terrestrial environments to coral reef systems. Availability of regularly acquired high spatial (< 5m pixels), multispectral satellite imagery has improved mapping and monitoring capabilities for shallow, marine environments such as seagrass and coral reefs. There is potential to further develop optical models for remote sensing applications to estimate and monitor reef system processes, such as primary productivity and calcification. This project collected field measurements of spectral absorptance and primary productivity and calcification rates for two reef systems: Heron Reef, southern Great Barrier Reef and Saipan Lagoon, Commonwealth of the Northern Mariana Islands. Field data were used to parameterize a light-use efficiency (LUE) model, estimating productivity from absorbed photosynthetically active radiation. The LUE model has been successfully applied in terrestrial environments for the past 40 years, and could potentially be used in shallow, marine environments. The model was used in combination with a map of benthic community composition produced from objective based image analysis of WorldView 2 imagery. Light-use efficiency was measured for functional groups: coral, algae, seagrass, and sediment. However, LUE was overestimated for sediment, which led to overestimation of productivity for the mapped area. This was due to differences in spatial and temporal resolution of field data used in the model. The limitations and application of the LUE model to coral reef environments will be presented.

Evaluation of coral reef carbonate production models at a global scale

NASA Astrophysics Data System (ADS)

Jones, N. S.; Ridgwell, A.; Hendy, E. J.

2014-09-01

Calcification by coral reef communities is estimated to account for half of all carbonate produced in shallow water environments and more than 25% of the total carbonate buried in marine sediments globally. Production of calcium carbonate by coral reefs is therefore an important component of the global carbon cycle. It is also threatened by future global warming and other global change pressures. Numerical models of reefal carbonate production are essential for understanding how carbonate deposition responds to environmental conditions including future atmospheric CO2 concentrations, but these models must first be evaluated in terms of their skill in recreating present day calcification rates. Here we evaluate four published model descriptions of reef carbonate production in terms of their predictive power, at both local and global scales, by comparing carbonate budget outputs with independent estimates. We also compile available global data on reef calcification to produce an observation-based dataset for the model evaluation. The four calcification models are based on functions sensitive to combinations of light availability, aragonite saturation (Ωa) and temperature and were implemented within a specifically-developed global framework, the Global Reef Accretion Model (GRAM). None of the four models correlated with independent rate estimates of whole reef calcification. The temperature-only based approach was the only model output to significantly correlate with coral-calcification rate observations. The absence of any predictive power for whole reef systems, even when consistent at the scale of individual corals, points to the overriding importance of coral cover estimates in the calculations. Our work highlights the need for an ecosystem modeling approach, accounting for population dynamics in terms of mortality and recruitment and hence coral cover, in estimating global reef carbonate budgets. In addition, validation of reef carbonate budgets is severely hampered by limited and inconsistent methodology in reef-scale observations.

Architecture and morphology of coral reef sequences. Modeling and observations from uplifting islands of SE Sulawesi, Indonesia

NASA Astrophysics Data System (ADS)

Pastier, Anne-Morwenn; Husson, Laurent; Bezos, Antoine; Pedoja, Kevin; Elliot, Mary; Hafidz, Abdul; Imran, Muhammad; Lacroix, Pascal; Robert, Xavier

2016-04-01

During the Late Neogene, sea level oscillations have profoundly shaped the morphology of the coastlines of intertropical zones, wherein relative sea level simultaneously controlled reef expansion and erosion of earlier reef bodies. In uplifted domains like SE Sulawesi, the sequences of fossil reefs display a variety of fossil morphologies. Similarly, the morphologies of the modern reefs are highly variable, including cliff notches, narrow fringing reefs, wide flat terraces, and barriers reefs. In this region, where uplift rates vary rapidly laterally, the entire set of morphologies is displayed within short distances. We developed a numerical model that predicts the architecture of fossil reefs sequences and apply it to observations from SE Sulawesi, accounting -amongst other parameters- for reef growth, coastal erosion, and uplift rates. The observations that we use to calibrate our models are mostly the morphology of both the onshore (dGPS and high-resolution Pleiades DEM) and offshore (sonar) coast, as well as U-Th radiometrically dated coral samples. Our method allows unravelling the spatial and temporal evolution of large domains on map view. Our analysis indicates that the architecture and morphology of uplifting coastlines is almost systematically polyphased (as attested by samples of different ages within a unique terrace), which assigns a primordial role to erosion, comparable to reef growth. Our models also reproduce the variety of modern morphologies, which are chiefly dictated by the uplift rates of the pre-existing morphology of the substratum, itself responding to the joint effects of reef building and subsequent erosion. In turn, we find that fossil and modern morphologies can be returned to uplift rates rather precisely, as the parametric window of each specific morphology is often narrow.

Numerical modeling of the impact of sea-level rise on fringing coral reef hydrodynamics and sediment transport

USGS Publications Warehouse

Storlazzi, C.D.; Elias, E.; Field, M.E.; Presto, M.K.

2011-01-01

Most climate projections suggest that sea level may rise on the order of 0.5-1.0 m by 2100; it is not clear, however, how fluid flow and sediment dynamics on exposed fringing reefs might change in response to this rapid sea-level rise. Coupled hydrodynamic and sediment-transport numerical modeling is consistent with recent published results that suggest that an increase in water depth on the order of 0.5-1.0 m on a 1-2 m deep exposed fringing reef flat would result in larger significant wave heights and setup, further elevating water depths on the reef flat. Larger waves would generate higher near-bed shear stresses, which, in turn, would result in an increase in both the size and the quantity of sediment that can be resuspended from the seabed or eroded from adjacent coastal plain deposits. Greater wave- and wind-driven currents would develop with increasing water depth, increasing the alongshore and offshore flux of water and sediment from the inner reef flat to the outer reef flat and fore reef where coral growth is typically greatest. Sediment residence time on the fringing reef flat was modeled to decrease exponentially with increasing sea-level rise as the magnitude of sea-level rise approached the mean water depth over the reef flat. The model results presented here suggest that a 0.5-1.0 m rise in sea level will likely increase coastal erosion, mixing and circulation, the amount of sediment resuspended, and the duration of high turbidity on exposed reef flats, resulting in decreased light availability for photosynthesis, increased sediment-induced stress on the reef ecosystem, and potentially affecting a number of other ecological processes.

The effect of local hydrodynamics on the spatial extent and morphology of cold-water coral habitats at Tisler Reef, Norway

NASA Astrophysics Data System (ADS)

De Clippele, L. H.; Huvenne, V. A. I.; Orejas, C.; Lundälv, T.; Fox, A.; Hennige, S. J.; Roberts, J. M.

2018-03-01

This study demonstrates how cold-water coral morphology and habitat distribution are shaped by local hydrodynamics, using high-definition video from Tisler Reef, an inshore reef in Norway. A total of 334 video frames collected on the north-west (NW) and south-east (SE) side of the reef were investigated for Lophelia pertusa coral cover and morphology and for the cover of the associated sponges Mycale lingua and Geodia sp. Our results showed that the SE side was a better habitat for L. pertusa (including live and dead colonies). Low cover of Geodia sp. was found on both sides of Tisler Reef. In contrast, Mycale lingua had higher percentage cover, especially on the NW side of the reef. Bush-shaped colonies of L. pertusa with elongated branches were the most abundant coral morphology on Tisler Reef. The highest abundance and density of this morphology were found on the SE side of the reef, while a higher proportion of cauliflower-shaped corals with short branches were found on the NW side. The proportion of very small L. pertusa colonies was also significantly higher on the SE side of the reef. The patterns in coral spatial distribution and morphology were related to local hydrodynamics—there were more frequent periods of downwelling currents on the SE side—and to the availability of suitable settling substrates. These factors make the SE region of Tisler Reef more suitable for coral growth. Understanding the impact of local hydrodynamics on the spatial extent and morphology of coral, and their relation to associated organisms such as sponges, is key to understanding the past and future development of the reef.

Modern stromatolite reefs fringing a brackish coastline, Chetumal Bay, Belize

NASA Astrophysics Data System (ADS)

Rasmussen, Kenneth A.; MacIntyre, Ian G.; Prufert, Leslie

1993-03-01

Reef-forming stromatolites have been discovered along the windward shoreline of Chetumal Bay, Belize, just south of the mouth of the Rio Hondo. The reefs and surrounding sediment are formed by the precipitation of submicrocrystalline calcite upon the sheaths of filamentous cyanobacteria, principally Scytonema, under a seasonally fluctuating, generally brackish salinity regime (0‰10‰). Well-cemented, wave-resistant buttresses of coalesced stromatolite heads form arcuate or club-shaped reefs up to 42 m long and 1.5 m in relief that are partially emergent during low tide. Oncolitic rubble fields are present between well-developed reefs along the 1.5 km trend, which parallels the mangrove coastline 40-100 m offshore. The mode of reef growth, as illustrated by surface relief and internal structure, changes with increasing water depth and energy, proximity to bottom sediments, and dominant cyanobacterial taxa. Sediment trapping and binding by cyanobacteria are of limited importance to reef growth, and occur only where stromatolite heads or oncolites are in direct contact with the sandy sea floor. Radiocarbon-dated mangrove peat at the base of the reef suggests that it began to form about 2300 yr B.P., as shoreline encrustations that were stranded offshore following storm-induced retreat of the mangrove coast.

CORAL REEF BIOLOGICAL CRITERIA: USING THE CLEAN ...

EPA Pesticide Factsheets

Coral reefs are declining at unprecedented rates worldwide due to multiple interactive stressors including climate change and land-based sources of pollution. The Clean Water Act (CWA) can be a powerful legal instrument for protecting water resources, including the biological inhabitants of coral reefs. The objective of the CWA is to restore and maintain the chemical, physical and biological integrity of water resources. Coral reef protection and restoration under the Clean Water Act begins with water quality standards - provisions of state or Federal law that consist of a designated use(s) for the waters of the United States and water quality criteria sufficient to protect the uses. Aquatic life use is the designated use that is measured by biological criteria (biocriteria). Biocriteria are expectations set by a jurisdiction for the quality and quantity of living aquatic resources in a defined waterbody. Biocriteria are an important addition to existing management tools for coral reef ecosystems. The Technical Support Document “Coral Reef Biological Criteria: Using the Clean Water Act to Protect a National Treasure” will provide a framework to aid States and Territories in their development, adoption, and implementation of coral reef biocriteria in their respective water quality standards. The Technical Support Document “Coral Reef Biological Criteria: Using the Clean Water Act to Protect a National Treasure” will provide a framework for coral re

[Influence of sediments and tungsten traces on the skeletal structure of Pseudodiploria: a reef building scleractinian coral from the Veracruz Reef System National Park, Mexico].

PubMed

Colín-García, Norberto A; Campos, Jorge E; Tello-Musi, Jose Luis; Arias-González, Jesús E

2016-09-01

Coral reefs are under intense conditions of stress caused by the anthropogenic activities in coastal areas and the increase of human population. Water effluents from urban and industrial areas carry large amounts of sediments and pollutants affecting corals populations, inducing bioerosion, increasing diseases and promoting the development of algae that compete for space with corals. In the Veracruz Reef System National Park (VRSNP) coral reefs are strongly affected by human activities carried out in the area. Gallega and Galleguilla reefs are among the most affected by wastewater discharges from the industrial (petrochemical and metallurgical) and urban areas in their vicinity. To assess the potential impact of this contamination on corals in the VRSNP, a chemical composition and morphology study of 76 Pseudodiploria colonies collected in reefs Gallega, Galleguilla, Isla Verde and Isla de Enmedio, was performed. Fragments of ~10 cm2 were collected and boric acid at 0.5 % was used to remove tissue from the skeleton; once clean, the morphology of each sample was determined with a scanning electron microscope (SEM). Subsequently, to test the chemical composition, an energy dispersion spectroscopy of X-ray chemical microanalysis (EDSX) was performed in the SEM. We found that corals from Gallega and Galleguilla reefs, located closer to human populations, presented high levels of tungsten and the skeleton exhibited multiple perforations. In contrast, corals from the farthest offshore reefs (Isla Verde and Isla de Enmedio) exhibited lower levels of tungsten and fewer perforations in their skeleton. These results demonstrated that anthropogenic activities in the NPVRS are affecting corals skeleton, highly damaging and promoting their bioerosion. The presence of traces of tungsten in the skeleton of corals is an evidence of the damage that waste discharges are causing to coral reefs. Discharges of large amounts of contaminants promoted the growth of harmful species that grow and develop into the corals skeleton, causing its bioerosion, and making them susceptible to disease and physical damage. This study is the first evidence of the effects of contamination on these species; therefore, further studies are necessary to determine the impact of pollution on their biology and survival.

A linked land-sea modeling framework to inform ridge-to-reef management in high oceanic islands.

PubMed

Delevaux, Jade M S; Whittier, Robert; Stamoulis, Kostantinos A; Bremer, Leah L; Jupiter, Stacy; Friedlander, Alan M; Poti, Matthew; Guannel, Greg; Kurashima, Natalie; Winter, Kawika B; Toonen, Robert; Conklin, Eric; Wiggins, Chad; Knudby, Anders; Goodell, Whitney; Burnett, Kimberly; Yee, Susan; Htun, Hla; Oleson, Kirsten L L; Wiegner, Tracy; Ticktin, Tamara

2018-01-01

Declining natural resources have led to a cultural renaissance across the Pacific that seeks to revive customary ridge-to-reef management approaches to protect freshwater and restore abundant coral reef fisheries. Effective ridge-to-reef management requires improved understanding of land-sea linkages and decision-support tools to simultaneously evaluate the effects of terrestrial and marine drivers on coral reefs, mediated by anthropogenic activities. Although a few applications have linked the effects of land cover to coral reefs, these are too coarse in resolution to inform watershed-scale management for Pacific Islands. To address this gap, we developed a novel linked land-sea modeling framework based on local data, which coupled groundwater and coral reef models at fine spatial resolution, to determine the effects of terrestrial drivers (groundwater and nutrients), mediated by human activities (land cover/use), and marine drivers (waves, geography, and habitat) on coral reefs. We applied this framework in two 'ridge-to-reef' systems (Hā'ena and Ka'ūpūlehu) subject to different natural disturbance regimes, located in the Hawaiian Archipelago. Our results indicated that coral reefs in Ka'ūpūlehu are coral-dominated with many grazers and scrapers due to low rainfall and wave power. While coral reefs in Hā'ena are dominated by crustose coralline algae with many grazers and less scrapers due to high rainfall and wave power. In general, Ka'ūpūlehu is more vulnerable to land-based nutrients and coral bleaching than Hā'ena due to high coral cover and limited dilution and mixing from low rainfall and wave power. However, the shallow and wave sheltered back-reef areas of Hā'ena, which support high coral cover and act as nursery habitat for fishes, are also vulnerable to land-based nutrients and coral bleaching. Anthropogenic sources of nutrients located upstream from these vulnerable areas are relevant locations for nutrient mitigation, such as cesspool upgrades. In this study, we located coral reefs vulnerable to land-based nutrients and linked them to priority areas to manage sources of human-derived nutrients, thereby demonstrating how this framework can inform place-based ridge-to-reef management.

Mesophotic bioerosion: Variability and structural impact on U.S. Virgin Island deep reefs

NASA Astrophysics Data System (ADS)

Weinstein, David K.; Smith, Tyler B.; Klaus, James S.

2014-10-01

Mesophotic reef corals, found 30-150 m below sea level, build complex structures that provide habitats for diverse ecosystems. Whereas bioerosion is known to impact the development and persistence of shallow reef structures, little is known regarding the extent of mesophotic bioerosion or how it might affect deeper reef geomorphology and carbonate accretion. Originally pristine experimental coral substrates and collected coral rubble were both used to investigate the variation and significance of mesophotic coral reef bioerosion south of St. Thomas, U.S. Virgin Islands. Bioerosion rates were calculated from experimental coral substrates exposed as framework for 1 and 2 years at four structurally distinct mesophotic coral reef habitats (between 30 and 45 m) as well as at a mid-shelf patch reef (21 m) and a shallow fringing patch reef (9 m). The long-term effects of macroboring were assessed by examining coral rubble collected at all sites. Overall, differences in bioerosional processes were found between shallow and mesophotic reefs. Increases in bioerosion on experimental substrates (amount of weight lost) were related to both decreasing seawater depth and increasing biomass of bioeroding parrotfish. Significant differences in coral skeleton bioerosion rates were also found between the transitional mesophotic reef zone (30-35 m) and the upper mesophotic reef zone (35-50 m) after 2 years of exposure, ranging from - 19.6 to 3.7 g/year. Total coral rubble macroboring was greater at most deep sites compared to shallower sites. Bioerosional grazing was found to dominate initial substrate modification in reefs 30.7 m and shallower, but sponges are believed to act as the main time-averaged long-term substrate bioeroders in reefs between 35 and 50 m. Although initial substrate bioerosion rates of a uniform substrate were relatively homogeneous in the 35-50 m depth zone, comparison of site composition suggests that mesophotic bioerosion will vary depending on the amount, location, and type of available substrate, and the duration both coral rubble and in situ coral framework are exposed on the seafloor. These variations may exaggerate pronounced structural differences in mesophotic reef habitats that experience few other methods of erosion.

A clear human footprint in the coral reefs of the Caribbean.

PubMed

Mora, Camilo

2008-04-07

The recent degradation of coral reefs worldwide is increasingly well documented, yet the underlying causes remain debated. In this study, we used a large-scale database on the status of coral reef communities in the Caribbean and analysed it in combination with a comprehensive set of socioeconomic and environmental databases to decouple confounding factors and identify the drivers of change in coral reef communities. Our results indicated that human activities related to agricultural land use, coastal development, overfishing and climate change had created independent and overwhelming responses in fishes, corals and macroalgae. While the effective implementation of marine protected areas (MPAs) increased the biomass of fish populations, coral reef builders and macroalgae followed patterns of change independent of MPAs. However, we also found significant ecological links among all these groups of organisms suggesting that the long-term stability of coral reefs as a whole requires a holistic and regional approach to the control of human-related stressors in addition to the improvement and establishment of new MPAs.

A clear human footprint in the coral reefs of the Caribbean

PubMed Central

Mora, Camilo

2008-01-01

The recent degradation of coral reefs worldwide is increasingly well documented, yet the underlying causes remain debated. In this study, we used a large-scale database on the status of coral reef communities in the Caribbean and analysed it in combination with a comprehensive set of socioeconomic and environmental databases to decouple confounding factors and identify the drivers of change in coral reef communities. Our results indicated that human activities related to agricultural land use, coastal development, overfishing and climate change had created independent and overwhelming responses in fishes, corals and macroalgae. While the effective implementation of marine protected areas (MPAs) increased the biomass of fish populations, coral reef builders and macroalgae followed patterns of change independent of MPAs. However, we also found significant ecological links among all these groups of organisms suggesting that the long-term stability of coral reefs as a whole requires a holistic and regional approach to the control of human-related stressors in addition to the improvement and establishment of new MPAs. PMID:18182370

Diel Variability in Seawater pH Relates to Calcification and Benthic Community Structure on Coral Reefs

PubMed Central

Martz, Todd R.; Brainard, Russell E.

2012-01-01

Community structure and assembly are determined in part by environmental heterogeneity. While reef-building corals respond negatively to warming (i.e. bleaching events) and ocean acidification (OA), the extent of present-day natural variability in pH on shallow reefs and ecological consequences for benthic assemblages is unknown. We documented high resolution temporal patterns in temperature and pH from three reefs in the central Pacific and examined how these data relate to community development and net accretion rates of early successional benthic organisms. These reefs experienced substantial diel fluctuations in temperature (0.78°C) and pH (>0.2) similar to the magnitude of ‘warming’ and ‘acidification’ expected over the next century. Where daily pH within the benthic boundary layer failed to exceed pelagic climatological seasonal lows, net accretion was slower and fleshy, non-calcifying benthic organisms dominated space. Thus, key aspects of coral reef ecosystem structure and function are presently related to natural diurnal variability in pH. PMID:22952785

Sewage pollution in Negril, Jamaica: effects on nutrition and ecology of coral reef macroalgae

NASA Astrophysics Data System (ADS)

Lapointe, B. E.; Thacker, K.; Hanson, C.; Getten, L.

2011-07-01

Coral reefs in the Negril Marine Park (NMP), Jamaica, have been increasingly impacted by nutrient pollution and macroalgal blooms following decades of intensive development as a major tourist destination. A baseline survey of DIN and SRP concentrations, C:N:P and stable nitrogen isotope ratios (δ15N) of abundant reef macroalgae on shallow and deep reefs of the NMP in 1998 showed strong P-limitation and evidence of increasing sewage pollution. In 1999, a sewage collection and treatment project began diverting wastewater from the resort and urban areas to a pond system that discharged partially-treated effluent into the South Negril River (SNR). These sewage discharges significantly increased concentrations of NH{4/+} and SRP (N:P ˜13) in the SNR, which flows into Long Bay and around Negril's "West End". Concentrations of SRP, the primary limiting nutrient, were higher on shallow reefs of the West End in 2001 compared to 1998. Stable nitrogen isotope ratios (δ15N) of abundant reef macroalgae on both shallow and deep reefs of the West End in 2002 were significantly higher than baseline values in 1998, indicating an escalating impact of sewage nitrogen pollution over this timeframe. The increased nutrient concentrations and δ15N enrichment of reef macroalgae correlated with blooms of the chlorophyte Chaetomorpha linum in shallow waters of Long Bay and Codium isthmocladum and Caulerpa cupressoides on deep reefs of the West End. Sewage treatment systems adjacent to coral reefs must include nutrient removal to ensure that DIN and SRP concentrations, after dilution, are below the low thresholds noted for these oligotrophic ecosystems.

Spatial variability of sediment transport processes over intra‐ and subtidal timescales within a fringing coral reef system

USGS Publications Warehouse

Pomeroy, Andrew; Lowe, Ryan J.; Ghisalberti, Marco; Winter, Gundula; Storlazzi, Curt D.; Cuttler, Michael V. W.

2018-01-01

Sediment produced on fringing coral reefs that is transported along the bed or in suspension affects ecological reef communities as well as the morphological development of the reef, lagoon, and adjacent shoreline. This study quantified the physical process contribution and relative importance of incident waves, infragravity waves, and mean currents to the spatial and temporal variability of sediment in suspension. Estimates of bed shear stresses demonstrate that incident waves are the key driver of the SSC variability spatially (reef flat, lagoon, and channels) but cannot not fully describe the SSC variability alone. The comparatively small but statistically significant contribution to the bed shear stress by infragravity waves and currents, along with the spatial availability of sediment of a suitable size and volume, is also important. Although intra‐tidal variability in SSC occurs in the different reef zones, the majority of the variability occurs over longer slowly varying (subtidal) time scales, which is related to the arrival of large incident waves at a reef location. The predominant flow pathway, which can transport suspended sediment, consists of cross‐reef flow across the reef flat that diverges in the lagoon and returns offshore through channels. This pathway is primarily due to subtidal variations in wave‐driven flows, but can also be driven alongshore by wind stresses when the incident waves are small. Higher frequency (intra‐tidal) current variability also occur due to both tidal flows, as well as variations in the water depth that influence wave transmission across the reef and wave‐driven currents.

Simple ecological trade-offs give rise to emergent cross-ecosystem distributions of a coral reef fish.

PubMed

Grol, Monique G G; Nagelkerken, Ivan; Rypel, Andrew L; Layman, Craig A

2011-01-01

Ecosystems are intricately linked by the flow of organisms across their boundaries, and such connectivity can be essential to the structure and function of the linked ecosystems. For example, many coral reef fish populations are maintained by the movement of individuals from spatially segregated juvenile habitats (i.e., nurseries, such as mangroves and seagrass beds) to areas preferred by adults. It is presumed that nursery habitats provide for faster growth (higher food availability) and/or low predation risk for juveniles, but empirical data supporting this hypothesis is surprisingly lacking for coral reef fishes. Here, we investigate potential mechanisms (growth, predation risk, and reproductive investment) that give rise to the distribution patterns of a common Caribbean reef fish species, Haemulon flavolineatum (French grunt). Adults were primarily found on coral reefs, whereas juvenile fish only occurred in non-reef habitats. Contrary to our initial expectations, analysis of length-at-age revealed that growth rates were highest on coral reefs and not within nursery habitats. Survival rates in tethering trials were 0% for small juvenile fish transplanted to coral reefs and 24-47% in the nurseries. As fish grew, survival rates on coral reefs approached those in non-reef habitats (56 vs. 77-100%, respectively). As such, predation seems to be the primary factor driving across-ecosystem distributions of this fish, and thus the primary reason why mangrove and seagrass habitats function as nursery habitat. Identifying the mechanisms that lead to such distributions is critical to develop appropriate conservation initiatives, identify essential fish habitat, and predict impacts associated with environmental change.

Simple ecological trade-offs give rise to emergent cross-ecosystem distributions of a coral reef fish

PubMed Central

Grol, Monique G. G.; Rypel, Andrew L.; Layman, Craig A.

2010-01-01

Ecosystems are intricately linked by the flow of organisms across their boundaries, and such connectivity can be essential to the structure and function of the linked ecosystems. For example, many coral reef fish populations are maintained by the movement of individuals from spatially segregated juvenile habitats (i.e., nurseries, such as mangroves and seagrass beds) to areas preferred by adults. It is presumed that nursery habitats provide for faster growth (higher food availability) and/or low predation risk for juveniles, but empirical data supporting this hypothesis is surprisingly lacking for coral reef fishes. Here, we investigate potential mechanisms (growth, predation risk, and reproductive investment) that give rise to the distribution patterns of a common Caribbean reef fish species, Haemulon flavolineatum (French grunt). Adults were primarily found on coral reefs, whereas juvenile fish only occurred in non-reef habitats. Contrary to our initial expectations, analysis of length-at-age revealed that growth rates were highest on coral reefs and not within nursery habitats. Survival rates in tethering trials were 0% for small juvenile fish transplanted to coral reefs and 24–47% in the nurseries. As fish grew, survival rates on coral reefs approached those in non-reef habitats (56 vs. 77–100%, respectively). As such, predation seems to be the primary factor driving across-ecosystem distributions of this fish, and thus the primary reason why mangrove and seagrass habitats function as nursery habitat. Identifying the mechanisms that lead to such distributions is critical to develop appropriate conservation initiatives, identify essential fish habitat, and predict impacts associated with environmental change. PMID:21072542

Coral reef diseases in the Atlantic-Caribbean

USGS Publications Warehouse

Rogers, Caroline S.; Weil, Ernesto; Dubinsky, Zvy; Stambler, Noga

2010-01-01

Coral reefs are the jewels of the tropical oceans. They boast the highest diversity of all marine ecosystems, aid in the development and protection of other important, productive coastal marine communities, and have provided millions of people with food, building materials, protection from storms, recreation and social stability over thousands of years, and more recently, income, active pharmacological compounds and other benefits. These communities have been deteriorating rapidly in recent times. The continuous emergence of coral reef diseases and increase in bleaching events caused in part by high water temperatures among other factors underscore the need for intensive assessments of their ecological status and causes and their impact on coral reefs.

Development and Application of a Three-dimensional Seismo-acoustic Coupled-mode Model

DTIC Science & Technology

2014-09-30

of coral reef fish need to locate a reef , and sound emanating from reefs may act as a cue to guide them. Using acoustic data collected from Bahia...approximate the solution to the wave equation. RELATED PROJECTS Geoacoustic inversion in three-dimensional environments The goal of this project is...shear wave speed Under this project an laboratory measurements the compressional and shear wave speeds and attenuations in coarse and fine grained

Cruise report RV Ocean Surveyor Cruise 0-1-00-GM; the bathymetry and acoustic backscatter of the Pinnacles area; northern Gulf of Mexico, May 23, through June 10, 2000; Venice, LA to Venice, LA

USGS Publications Warehouse

Gardner, James V.; Sulak, Kenneth J.; Dartnell, Peter; Hellequin, Laurent; Calder, Brian R.; Mayer, Larry A.

2000-01-01

An extensive deep (~100 m) reef tract occurs on the Mississippi-Alabama outer continental shelf (OCS). The tract, known as "The Pinnacles", is apparently part of a sequence of drowned reef complexes along the "40-fathom" shelf edge of the northern Gulf of Mexico (Ludwick and Walton, 1957). It is critical to determine the accurate geomorphology of deep-reefs because of their importance as benthic habitats for fisheries. The Pinnacles were mapped by Ludwick and Walton (1957) using a single-beam echo sounder but the spatial extent and morphology were interpreted from a series of widely separated, poorly navigated bathymetric profiles. Other recent studies, supported by Minerals Management Service (MMS), used towed sidescan sonars and single-channel seismic-reflection profiling. None of the existing studies provide the quality of geomorphic data necessary for reasonable habitat studies. The fish faunas of shallow hermatypic reefs have been well studied, but those of deep ahermatypic reefs have relatively ignored. The ecology of deep ahermatypic reefs is fundamentally different from hermatipic reefs because autochthonous intracellular symbiotic zooxanthellae (the carbon source for hermatypic corals) do not form the base of the trophic web. Instead, exogenous plankton, transported to the reef by currents, serves as the primary carbon source. Deep OCS reefs also lie below the practical working depths for SCUBA; consequently, remote investigations from a ship or in situ investigations using submersibles or ROVs are required. Community structure and trophodynamics of demersal fishes of the Pinnacles are presently the focus of USGS reseach. A goal of the research is to answer questions concerning the relataive roles played by geomorphology and surficial geology in the interaction with and control of biological differentiation. OCS reefs are important because we now know that such areas are important coral reef fish havens, key spawning 2 sites, and a critical early larval and juvenile habitats for economically important sport/food fishes. Also, deep-reef ecosystems as well as the fish populations they sustain are impacted by intensive oil-field development. It is now known that deep OCS reefs function as a key source of re-population (via seasonal and ontogenetic migration) of already heavily impacted inshore reefs. A reflection of this realization is the recent closure by the Gulf States Fisheries Management Council of a 600 mi 2 area of the Florida Middle Grounds (another unmapped major "40-fathom" OCS reef complex) to commercial fishing to preserve grouper spawning aggregations. It is known that the Pinnacles reefs support a lush fauna of ahermatypic hard corals, soft corals, black corals, sessile crinoids and sponges—together forming a living habitat for a well-developed fish fauna. The fish fauna comprises typical Caribbean reef fishes and Carolinian shelf fishes, plus epipelagic fishes, and a few deep-sea fishes. The base of the megafaunal invertebrate food web is plankton, borne by essentially continuous semi-laminar currents flowing predominantly out of the SW, up, along and across the shelf edge. These currents are intercepted by pinnacles reefs, which lie roughly in two linear tracts, parallel to the coastline (see fig. 1 in report). USGS research initiated in 1997 (Sulak et al., in progress) has demonstrated that the Pinnacles reef fish fauna is dominated by planktivorous fishes. Ongoing food habits, trophic web and stable isotope analyses by the USGS are reinforcing a basic picture of deep OCS reefs as ecosystems based on exogenous current-borne plankton. Long-term current meter deployments have demonstrated that the >3 m,

The applicability of terrestrial visitor impact management strategies to the protection of coral reefs

USGS Publications Warehouse

Marion, J.L.; Rogers, C.S.

1994-01-01

A dramatic expansion in nature-based tourism to tropical coastal destinations has occurred in the past 20 years. Tourism development, combined with intense recreational pressures, has irreversibly transformed and degraded many popular scenic natural environments. This paper examines the management of recreational impacts to coral reefs using Virgin Islands National Park as a case study. A review of terrestrial recreational ecology research explores the implications and potential applicability of some principal findings to the protection of coral reefs. Visitor impact management recommendations for the protection of coral reefs are offered. Managers can minimize coral reef recreational impacts by (1) restricting high-impact uses, (2) containing rather than dispersing recreational use, (3) encouraging the use of resistant environments, (4) teaching low-impact recreational practices, and (5) enforcing park rules and regulations.

Do Lanice conchilega (sandmason) aggregations classify as reefs? Quantifying habitat modifying effects

NASA Astrophysics Data System (ADS)

Rabaut, Marijn; Vincx, Magda; Degraer, Steven

2009-03-01

The positive effects of the tube dwelling polychaete Lanice conchilega for the associated benthic community emphasizes this bio-engineer’s habitat structuring capacity (Rabaut et al. in Estuar Coastal Shelf Sci, 2007). Therefore, L. conchilega aggregations are often referred to as reefs. The reef building capacity of ecosystem engineers is important for marine management as the recognition as reef builder will increase the protected status the concerned species. To classify as reefs however, bio-engineering activities need to significantly alter several habitat characteristics: elevation, sediment consolidation, spatial extent, patchiness, reef builder density, biodiversity, community structure, longevity and stability [guidelines to apply the EU reef-definition by Hendrick and Foster-Smith (J Mar Biol Assoc UK 86:665-677, 2006)]. This study investigates the physical and temporal characteristics of high density aggregations of L. conchilega. Results show that the elevation and sediment consolidation of the biogenic mounds was significantly higher compared to the surrounding unstructured sediment. Areas with L. conchilega aggregations tend to be extensive and patchiness is high (coverage 5-18%). The discussion of present study evaluates whether L. conchilega aggregations can be considered as reefs (discussing physical, biological and temporal characteristics). Individual aggregations were found to persist for several years if yearly renewal of existing aggregations through juvenile settlement occurred. This renewal is enhanced by local hydrodynamic changes and availability of attaching structures (adult tubes). We conclude that the application of the EU definition for reefs provides evidence that all physical and biological characteristics are present to classify L. conchilega as a reef builder. For temporal characteristics, this study shows several mechanisms exist for reefs to persist for a longer period of time. However, a direct evidence of long-lived individual reefs does not exist. As a range of aggregation development exists, ‘reefiness’ is not equal for all aggregations and a scoring table to quantify L. conchilega reefiness is presented.

Coral reef evolution on rapidly subsiding margins

USGS Publications Warehouse

Webster, J.M.; Braga, J.C.; Clague, D.A.; Gallup, C.; Hein, J.R.; Potts, D.C.; Renema, W.; Riding, R.; Riker-Coleman, K.; Silver, E.; Wallace, L.M.

2009-01-01

A series of well-developed submerged coral reefs are preserved in the Huon Gulf (Papua New Guinea) and around Hawaii. Despite different tectonics settings, both regions have experienced rapid subsidence (2-6??m/ka) over the last 500??ka. Rapid subsidence, combined with eustatic sea-level changes, is responsible for repeated drowning and backstepping of coral reefs over this period. Because we can place quantitative constraints on these systems (i.e., reef drowning age, eustatic sea-level changes, subsidence rates, accretion rates, basement substrates, and paleobathymetry), these areas represent unique natural laboratories for exploring the roles of tectonics, reef accretion, and eustatic sea-level changes in controlling the evolution of individual reefs, as well as backstepping of the entire system. A review of new and existing bathymetric, radiometric, sedimentary facies and numerical modeling data indicate that these reefs have had long, complex growth histories and that they are highly sensitive, recording drowning not only during major deglaciations, but also during high-frequency, small-amplitude interstadial and deglacial meltwater pulse events. Analysis of five generalized sedimentary facies shows that reef drowning is characterized by a distinct biological and sedimentary sequence. Observational and numerical modeling data indicate that on precessional (20??ka) and sub-orbital timescales, the rate and amplitude of eustatic sea-level changes are critical in controlling initiation, growth, drowning or sub-aerial exposure, subsequent re-initiation, and final drowning. However, over longer timescales (> 100-500??ka) continued tectonic subsidence and basement substrate morphology influence broad scale reef morphology and backstepping geometries. Drilling of these reefs will yield greatly expanded stratigraphic sections compared with similar reefs on slowly subsiding, stable and uplifting margins, and thus they represent a unique archive of sea-level and climate changes, as well as a record of the response of coral reefs to these changes over the last six glacial cycles. ?? 2008 Elsevier B.V. All rights reserved.

76 FR 39858 - Western Pacific Fisheries; Approval of a Marine Conservation Plan for Guam

Federal Register 2010, 2011, 2012, 2013, 2014

2011-07-07

... assessment and monitoring of Guam coral reef flat communities. Objective 6. Domestic fisheries development... life-history data of nearshore reef fish. g. Support Guam volunteer fishery data collection project. h...

Miocene reef corals: A review

DOE Office of Scientific and Technical Information (OSTI.GOV)

Frost, S.H.

1988-01-01

Tectonic blockage in the Middle East of westward-flowing Tethys surface circulation during the latest Oligocene led to creation in the earliest Miocene of endemic Mediterranean, Western Atlantic-Caribbean, and Indo-Pacific realms. A great reduction in reef coral diversity from 60-80 Oligocene species to 25-35 early Miocene species occurred in the Western Atlantic-Caribbean and Mediterranean areas accompanied by a decrease in reef growth. A slower and less drastic change apparently occurred in the Indo-Pacific area. Early Miocene reef corals of the Western Atlantic-Caribbean comprise a transition between the cosmopolitan Oligocene fauna and its endemic mid-Miocene to modern counterpart. Although early Miocene reefsmore » were dominated by a Porites-Montastrea assemblage, eastward flow of Pacific circulation brought with it ''exotic'' corals such as Coscinaraea and Pseudocolumnastrea. Also, many cosmopolitan genera persisted from the Oligocene. During the middle to late Miocene, most of the species still living on Holocene reefs evolved. As the Mediterranean basin became more restricted, there was a slow decline in reef corals from 20 - 25 species in the Aquitainian to less than five species in the Messinian. Eustatic lowstand led to the extinction of reef-building corals in the late Messinian. In the Indo-Pacific, Neogene evolution of reef corals was conservative. Excluding the Acroporidae and Seriatoporidae, most Holocene framework species had evolved by the middle Miocene. Interplay between regional tectonics and eustatic sea level changes led to extensive development of middle to late Miocene pinnacle reefs over the southwestern Pacific.« less

Recreational Diving Impacts on Coral Reefs and the Adoption of Environmentally Responsible Practices within the SCUBA Diving Industry

NASA Astrophysics Data System (ADS)

Roche, Ronan C.; Harvey, Chloe V.; Harvey, James J.; Kavanagh, Alan P.; McDonald, Meaghan; Stein-Rostaing, Vivienne R.; Turner, John R.

2016-07-01

Recreational diving on coral reefs is an activity that has experienced rapidly growing levels of popularity and participation. Despite providing economic activity for many developing coastal communities, the potential role of dive impacts in contributing to coral reef damage is a concern at heavily dived locations. Management measures to address this issue increasingly include the introduction of programmes designed to encourage environmentally responsible practices within the dive industry. We examined diver behaviour at several important coral reef dive locations within the Philippines and assessed how diver characteristics and dive operator compliance with an environmentally responsible diving programme, known as the Green Fins approach, affected reef contacts. The role of dive supervision was assessed by recording dive guide interventions underwater, and how this was affected by dive group size. Of the 100 recreational divers followed, 88 % made contact with the reef at least once per dive, with a mean (±SE) contact rate of 0.12 ± 0.01 per min. We found evidence that the ability of dive guides to intervene and correct diver behaviour in the event of a reef contact decreases with larger diver group sizes. Divers from operators with high levels of compliance with the Green Fins programme exhibited significantly lower reef contact rates than those from dive operators with low levels of compliance. The successful implementation of environmentally responsible diving programmes, which focus on influencing dive industry operations, can contribute to the management of human impacts on coral reefs.

Coral Reef Ecosystems

NASA Astrophysics Data System (ADS)

Yap, Helen T.

Coral reefs are geological structures of significant dimensions, constructed over millions of years by calcifying organisms. The present day reef-builders are hard corals belonging to the order Scleractinia, phylum Cnidaria. The greatest concentrations of coral reefs are in the tropics, with highest levels of biodiversity situated in reefs of the Indo-West Pacific region. These ecosystems have provided coastal protection and livelihood to human populations over the millennia. Human activities have caused destruction of these habitats, the intensity of which has increased alarmingly since the latter decades of the twentieth century. The severity of this impact is directly related to exponential growth rates of human populations especially in the coastal areas of the developing world. However, a more recently recognized phenomenon concerns disturbances brought about by the changing climate, manifested mainly as rising sea surface temperatures, and increasing acidification of ocean waters due to greater drawdown of higher concentrations of atmospheric carbon dioxide. Management efforts have so far not kept pace with the rates of degradation, so that the spatial extent of damaged reefs and the incidences of localized extinction of reef species are increasing year after year. The major management efforts to date consist of establishing marine protected areas and promoting the active restoration of coral habitats.

Development of small carbonate banks on the south Florida platform margin: Response to sea level and climate change

USGS Publications Warehouse

Mallinson, David J.; Hine, Albert C.; Hallock, Pamela; Locker, Stanley D.; Shinn, Eugene; Naar, David; Donahue, Brian; Weaver, Douglas C.

2003-01-01

Geophysical and coring data from the Dry Tortugas, Tortugas Bank, and Riley’s Hump on the southwest Florida margin reveal the stratigraphic framework and growth history of these carbonate banks. The Holocene reefs of the Dry Tortugas and Tortugas Bank are approximately 14 and 10 m thick, respectively, and are situated upon Pleistocene reefal edifices. Tortugas Bank consists of the oldest Holocene corals in the Florida Keys with earliest coral recruitment occurring at ∼9.6 cal ka. Growth curves for the Tortugas Bank reveal slow growth (<1 mm/yr) until 6.2 cal ka, then a rapid increase to 3.4 mm/yr, until shallow reef demise at ∼4.2 cal ka. Coral reef development at the Dry Tortugas began at ∼6.4 cal ka. Aggradation at the Dry Tortugas was linear, and rapid (∼3.7 mm/yr) and kept pace with sea-level change. The increase in aggradation rate of Tortugas Bank at 6.2 cal ka is attributed to the growth of the Dry Tortugas reefs, which formed a barrier to inimical shelf water. Termination of shallow (<15 m below sea level) reef growth at Tortugas Bank at ∼4.2 cal ka is attributed to paleoclimate change in the North American interior that increased precipitation and fluvial discharge. Reef growth rates and characteristics are related to the rate of sea-level rise relative to the position of the reef on the shelf margin, and are additionally modified by hydrographic conditions related to climate change.

Quantitative morphology of a fringing reef tract from high-resolution laser bathymetry: Southern Molokai, Hawaii

USGS Publications Warehouse

Storlazzi, C.D.; Logan, J.B.; Field, M.E.

2003-01-01

High-resolution Scanning Hydrographic Operational Airborne Lidar Survey (SHOALS) laser-determined bathymetric data were used to define the morphology of spur-and-groove structures on the fringing reef off the south coast of Molokai, Hawaii. These data provide a basis for mapping and analyzing morphology of the reef with a level of precision and spatial coverage never before attained. An extensive fringing coral reef stretches along the central two-thirds of Molokai's south shore (???40 km); along the east and west ends there is only a thin veneer of living coral with no developed reef complex. In total, ???4800 measurements of spur-and-groove height and the distance between adjacent spur crests (wavelength) were obtained along four isobaths. Between the 5m and 15m isobaths, the mean spur height increased from 0.7 m to 1.6 m, whereas the mean wavelength increased from 71 m to 104 m. Reef flat width was found to exponentially decrease with increasing wave energy. Overall, mean spur-and-groove height and wavelength were shown to be inversely proportional to wave energy. In high-energy environments, spur-and-groove morphology remains relatively constant across all water depths. In low-energy environments, however, spur-and-groove structures display much greater variation; they are relatively small and narrow in shallow depths and develop into much larger and broader features in deeper water. Therefore, it appears that waves exert a primary control on both the small and large-scale morphology of the reef off south Molokai.

Economic valuation of ecosystem services from coral reefs in the South Pacific: taking stock of recent experience.

PubMed

Laurans, Yann; Pascal, Nicolas; Binet, Thomas; Brander, Luke; Clua, Eric; David, Gilbert; Rojat, Dominique; Seidl, Andrew

2013-02-15

The economic valuation of coral reefs ecosystem services is currently seen as a promising approach to demonstrate the benefits of sustainable management of coral ecosystems to policymakers and to provide useful information for improved decisions. Most coral reefs economic studies have been conducted in the United States, Southeast Asia and the Caribbean, and only a few have covered the South Pacific region. In this region, coral reefs are essential assets for small island developing states as well as for developed countries. Accordingly, a series of ecosystem services valuations has been carried out recently in the South Pacific, to try and supply decision-makers with new information. Applying ecosystem services valuation to the specific ecological, social, economic and cultural contexts of the South Pacific is however not straightforward. This paper analyses how extant valuations address the various management challenges of coral reef regions in general and more specifically for the South Pacific. Bearing in mind that economic valuation has to match policy-making contexts, we emphasize a series of specific considerations when conducting and applying ecosystem services valuation in South Pacific ecological and social contexts. Finally, the paper examines the decision-making situations in which extant valuations took place. We conclude that, although ecosystem valuations have been effectively used as a means to raise awareness with respect to coral reef conservation, methodologies will have to be further developed, with multidisciplinary inputs, if they are to provide valuable inputs in local and technical decision-making. Copyright © 2012 Elsevier Ltd. All rights reserved.

The role of peripheral endemism and habitat associations in the evolution of the Indo-West Pacific tuskfishes (Labridae: Choerodon).

PubMed

Puckridge, Melody; Last, Peter R; Andreakis, Nikos

2015-03-01

The unrivalled level of biodiversity across the tropical Indo-Australian Archipelago (IAA) has been the subject of wide debate. Attempts to understand its origins have focussed on the timing of speciation, rates of diversification and the directionality of colonisation across geographical and climatic gradients in an array of marine groups. We investigate origins and evolution in the Choerodon tuskfishes, a group of labrids whose centre of diversity coincides with this region. Mitochondrial (COI, 16S) and nuclear (RAG2, Tmo4c4) molecular phylogenies and biogeographic analyses, coupled with molecular clock dating, were inferred from 19 of the 23 valid Choerodon species. Two additional, undescribed Choerodon species were also included, showing reciprocal monophyly in both genomes, confirming their species level status. Choerodon diverged from their ancestral sister group, the Odacines, at the onset of the Miocene, coinciding with the collision of the Australian and Eurasian Plates when extensive areas of shallow-water habitat formed. Despite subsequent evolutionary patterns being partially obscured by overlapping distribution ranges between many species and a lack of clear evidence for climatically driven lineage divergences, our data support an evolutionary scenario of peripheral endemics budding from once widespread populations across this biodiversity hotspot. Interestingly, these peripheral endemics tend to occupy more specialised reef or non-reef habitats whereas widespread groups appear to generally take advantage of both reef and non-reef environments. Our results are discussed in light of the most accredited hypotheses proposed to explain species richness in the IAA, with some support for processes such as centrifugal speciation. Copyright © 2014 Elsevier Inc. All rights reserved.

Development Strategy for Effective Sampling to Detect Possible Nutrient Fluxes in Oligotrophic Coastal Reef Waters in the Caribbean

DTIC Science & Technology

2009-01-01

catastrophic events (eg, hurricanes, tsuna- mis, floodings, harmful algal blooms and coral bleachings ). These changes have been known to jeopardise the...SUPPLEMENTARY NOTES 20090814035 14. ABSTRACT The stress contributed by nutrients to the coral reef ecosystem is among many problems that may be resolved using...Rosenstiel School of Marine and Atmospheric Science, University of Miami The stress contributed by nutrients to the coral reef ecosystem is among many

Monitoring of Beachsaver Reef with Filter Blanket and Double-T Sill at Cape May Point, New Jersey, Section 227 Demonstration Site; First Year Monitoring - 2002-2003

DTIC Science & Technology

2005-07-01

evaluate the functional, structural, and economic performance of the patented Beachsaver Reef prefabricated concrete submerged breakwater and the less...expensive prefabricated concrete structure called a Double-T sill. This demonstration project was developed through a cooperative effort of the U.S...patented Beachsaver Reef prefabricated concrete submerged breakwater and a less expensive, prefabricated concrete structure called a Double-T sill. Data

Modelling reef zonation in the Greater St Lucia Wetland Park, South Africa

NASA Astrophysics Data System (ADS)

Schleyer, Michael H.; Celliers, Louis

2005-05-01

East Africa has a rich coral fauna that extends to Maputaland in KwaZulu-Natal, South Africa. At this latitude, considered high and marginal for coral distribution and development, they form a veneer on limited, late Pleistocene reefs rather than forming the accretive, aragonite structures known as coral reefs. It is thus more appropriate to refer to them in this region as coral communities, the environment being rendered marginal for their development by reduced temperatures, light and aragonite saturation state. Subsequent to their discovery, the reefs were afforded protection within two Marine Protected Areas (the St Lucia and Maputaland Marine Reserves). They are found primarily within three reef complexes, with only the central complex being readily accessible to the public for ecotourism at present. With the creation of the Greater St Lucia Wetland Park, a World Heritage Site, and the expectation of an accompanying increase in ecotourism, the status quo seems set to change. The reefs are thus the current focus of a modelling initiative to provide decision support in their management. This paper examines the unique nature of the South African communities, their vulnerability and importance in the regional and global context, and, using representative data from the model, how an anticipated increase in their use could affect their sustainability. The case for scientifically based zonation for their use is presented.

Effects of fringing reefs on tsunami inundation: American Samoa

USGS Publications Warehouse

Gelfenbaum, G.; Apotsos, A.; Stevens, A.W.; Jaffe, B.

2011-01-01

A numerical model of tsunami inundation, Delft3D, which has been validated for the 29 September 2009 tsunami in Tutuila, American Samoa, is used to better understand the impact of fringing coral reefs and embayments on tsunami wave heights, inundation distances, and velocities. The inundation model is used to explore the general conditions under which fringing reefs act as coastal buffers against incoming tsunamis. Of particular interest is the response of tsunamis to reefs of varying widths, depths, and roughness, as well as the effects of channels incised in the reef and the focusing effect of embayments. Model simulations for conditions similar to Tutuila, yet simplified to be uniform in the alongshore, suggest that for narrow reefs, less than about 200 m wide, the shoaling owing to shallow water depths over the fringing reef dominates, inducing greater wave heights onshore under some conditions and farther inundation inland. As the reef width increases, wave dissipation through bottom friction begins to dominate and the reef causes the tsunami wave heights to decrease and the tsunami to inundate less far inland. A sensitivity analysis suggests that coral reef roughness is important in determining the manner in which a fringing reef affects tsunami inundation. Smooth reefs are more likely to increase the onshore velocity within the tsunami compared to rough reefs. A larger velocity will likely result in an increased impact of the tsunami on structures and buildings. Simulations developed to explore 2D coastal morphology show that incised channels similar to those found around Tutuila, as well as coastal embayments, also affect tsunami inundation, allowing larger waves to penetrate farther inland. The largest effect is found for channels located within embayments, and for embayments that narrow landward. These simulations suggest that embayments that narrow landward, such as Fagafue Bay on the north side of Tutuila, and that have an incised deep channel, can cause a significant increase in tsunami wave heights, inundation distances, and velocities. Wide embayments, similar in size to Massacre Bay, induce some tsunami amplification, but not as much as for the narrowing embayment.

Impact of warming events on reef-scale temperature variability as captured in two Little Cayman coral Sr/Ca records

NASA Astrophysics Data System (ADS)

von Reumont, J.; Hetzinger, S.; Garbe-Schönberg, D.; Manfrino, C.; Dullo, W.-Chr.

2016-03-01

The rising temperature of the world's oceans is affecting coral reef ecosystems by increasing the frequency and severity of bleaching and mortality events. The susceptibility of corals to temperature stress varies on local and regional scales. Insights into potential controlling parameters are hampered by a lack of long term in situ data in most coral reef environments and sea surface temperature (SST) products often do not resolve reef-scale variations. Here we use 42 years (1970-2012) of coral Sr/Ca data to reconstruct seasonal- to decadal-scale SST variations in two adjacent but distinct reef environments at Little Cayman, Cayman Islands. Our results indicate that two massive Diploria strigosa corals growing in the lagoon and in the fore reef responded differently to past warming events. Coral Sr/Ca data from the shallow lagoon successfully record high summer temperatures confirmed by in situ observations (>33°C). Surprisingly, coral Sr/Ca from the deeper fore reef is strongly affected by thermal stress events, although seasonal temperature extremes and mean SSTs at this site are reduced compared to the lagoon. The shallow lagoon coral showed decadal variations in Sr/Ca, supposedly related to the modulation of lagoonal temperature through varying tidal water exchange, influenced by the 18.6 year lunar nodal cycle. Our results show that reef-scale SST variability can be much larger than suggested by satellite SST measurements. Thus, using coral SST proxy records from different reef zones combined with in situ observations will improve conservation programs that are developed to monitor and predict potential thermal stress on coral reefs.

Ecosystem regime shifts disrupt trophic structure.

PubMed

Hempson, Tessa N; Graham, Nicholas A J; MacNeil, M Aaron; Hoey, Andrew S; Wilson, Shaun K

2018-01-01

Regime shifts between alternative stable ecosystem states are becoming commonplace due to the combined effects of local stressors and global climate change. Alternative states are characterized as substantially different in form and function from pre-disturbance states, disrupting the delivery of ecosystem services and functions. On coral reefs, regime shifts are typically characterized by a change in the benthic composition from coral to macroalgal dominance. Such fundamental shifts in the benthos are anticipated to impact associated fish communities that are reliant on the reef for food and shelter, yet there is limited understanding of how regime shifts propagate through the fish community over time, relative to initial or recovery conditions. This study addresses this knowledge gap using long-term data of coral reef regime shifts and recovery on Seychelles reefs following the 1998 mass bleaching event. It shows how trophic structure of the reef fish community becomes increasingly dissimilar between alternative reef ecosystem states (regime-shifted vs. recovering) with time since disturbance. Regime-shifted reefs developed a concave trophic structure, with increased biomass in base trophic levels as herbivorous species benefitted from increased algal resources. Mid trophic level species, including specialists such as corallivores, declined with loss of coral habitat, while biomass was retained in upper trophic levels by large-bodied, generalist invertivores. Recovering reefs also experienced an initial decline in mid trophic level biomass, but moved toward a bottom-heavy pyramid shape, with a wide range of feeding groups (e.g., planktivores, corallivores, omnivores) represented at mid trophic levels. Given the importance of coral reef fishes in maintaining the ecological function of coral reef ecosystems and their associated fisheries, understanding the effects of regime shifts on these communities is essential to inform decisions that enhance ecological resilience and economic sustainability. © 2017 by the Ecological Society of America.

Modeling fine-scale coral larval dispersal and interisland connectivity to help designate mutually-supporting coral reef marine protected areas: Insights from Maui Nui, Hawaii

USGS Publications Warehouse

Storlazzi, Curt; van Ormondt, Maarten; Chen, Yi-Leng; Elias, Edwin P. L.

2017-01-01

Connectivity among individual marine protected areas (MPAs) is one of the most important considerations in the design of integrated MPA networks. To provide such information for managers in Hawaii, USA, a numerical circulation model was developed to determine the role of ocean currents in transporting coral larvae from natal reefs throughout the high volcanic islands of the Maui Nui island complex in the southeastern Hawaiian Archipelago. Spatially- and temporally-varying wind, wave, and circulation model outputs were used to drive a km-scale, 3-dimensional, physics-based circulation model for Maui Nui. The model was calibrated and validated using satellite-tracked ocean surface current drifters deployed during coral-spawning conditions, then used to simulate the movement of the larvae of the dominant reef-building coral, Porites compressa, from 17 reefs during eight spawning events in 2010–2013. These simulations make it possible to investigate not only the general dispersal patterns from individual coral reefs, but also how anomalous conditions during individual spawning events can result in large deviations from those general patterns. These data also help identify those reefs that are dominated by self-seeding and those where self-seeding is limited to determine their relative susceptibility to stressors and potential roadblocks to recovery. Overall, the numerical model results indicate that many of the coral reefs in Maui Nui seed reefs on adjacent islands, demonstrating the interconnected nature of the coral reefs in Maui Nui and providing a key component of the scientific underpinning essential for the design of a mutually supportive network of MPAs to enhance conservation of coral reefs.

Tracing carbon flow through coral reef food webs using a compound-specific stable isotope approach.

PubMed

McMahon, Kelton W; Thorrold, Simon R; Houghton, Leah A; Berumen, Michael L

2016-03-01

Coral reefs support spectacularly productive and diverse communities in tropical and sub-tropical waters throughout the world's oceans. Debate continues, however, on the degree to which reef biomass is supported by new water column production, benthic primary production, and recycled detrital carbon (C). We coupled compound-specific stable C isotope ratio (δ(13)C) analyses with Bayesian mixing models to quantify C flow from primary producers to coral reef fishes across multiple feeding guilds and trophic positions in the Red Sea. Analyses of reef fishes with putative diets composed primarily of zooplankton (Amblyglyphidodon indicus), benthic macroalgae (Stegastes nigricans), reef-associated detritus (Ctenochaetus striatus), and coral tissue (Chaetodon trifascialis) confirmed that δ(13)C values of essential amino acids from all baseline C sources were both isotopically diagnostic and accurately recorded in consumer tissues. While all four source end-members contributed to the production of coral reef fishes in our study, a single-source end-member often dominated dietary C assimilation of a given species, even for highly mobile, generalist top predators. Microbially reworked detritus was an important secondary C source for most species. Seascape configuration played an important role in structuring resource utilization patterns. For instance, Lutjanus ehrenbergii showed a significant shift from a benthic macroalgal food web on shelf reefs (71 ± 13 % of dietary C) to a phytoplankton-based food web (72 ± 11 %) on oceanic reefs. Our work provides insights into the roles that diverse C sources play in the structure and function of coral reef ecosystems and illustrates a powerful fingerprinting method to develop and test nutritional frameworks for understanding resource utilization.

Breathing of a coral cay: Tracing tidally driven seawater recirculation in permeable coral reef sediments

NASA Astrophysics Data System (ADS)

Santos, Isaac R.; Erler, Dirk; Tait, Douglas; Eyre, Bradley D.

2010-12-01

Coral reefs are characterized by high gross productivity in spite of low nutrient concentrations. This apparent paradox may be partially reconciled if seawater recirculation in permeable sediments over large (meters) and long (hours to days) scales is an important source of recycled nitrogen and phosphorus to coral reefs. In this paper we use radon (222Rn, a natural tracer) to quantify tidally driven pore water (or groundwater) exchange between (1) an offshore coral cay island and its fringing reef lagoon and (2) a reef lagoon and the surrounding ocean. As seawater infiltrates Heron Island at high tide, it acquires a radon signal that can be detected when pore waters emerge from carbonate sands at low tide. A nonsteady state model indicated that vertical pore water upwelling rates (or saline submarine groundwater discharge) were >40 cm/d within the reef lagoon and >100 cm/d outside the lagoon at low tide. Within the lagoon, tidal pumping and temperature-driven convection were the main driving forces of pore water advection. At low tide, the reef lagoon level is about 1 m higher than the surrounding ocean. As a result, a steep hydraulic gradient develops at the reef edge, driving unidirectional filtration through the reef framework. Groundwaters were highly enriched in nitrate (average of 530 μmol, likely influenced by bird guano) relative to lagoon waters (1.9 μmol). Rough but conservative estimates indicated that groundwater-derived nitrate fluxes (7.9 mmol/m2/d) can replace the entire lagoon nitrate inventory every <19 days. We speculate that as offshore coral islands "breath" (inhale seawater at high tide and exhale groundwater at low tide), they release nutrients that lead to sustained productivity within coral reefs.

Microbial contributions to the persistence of coral reefs.

PubMed

Webster, Nicole S; Reusch, Thorsten B H

2017-10-01

On contemplating the adaptive capacity of reef organisms to a rapidly changing environment, the microbiome offers significant and greatly unrecognised potential. Microbial symbionts contribute to the physiology, development, immunity and behaviour of their hosts, and can respond very rapidly to changing environmental conditions, providing a powerful mechanism for acclimatisation and also possibly rapid evolution of coral reef holobionts. Environmentally acquired fluctuations in the microbiome can have significant functional consequences for the holobiont phenotype upon which selection can act. Environmentally induced changes in microbial abundance may be analogous to host gene duplication, symbiont switching / shuffling as a result of environmental change can either remove or introduce raw genetic material into the holobiont; and horizontal gene transfer can facilitate rapid evolution within microbial strains. Vertical transmission of symbionts is a key feature of many reef holobionts and this would enable environmentally acquired microbial traits to be faithfully passed to future generations, ultimately facilitating microbiome-mediated transgenerational acclimatisation (MMTA) and potentially even adaptation of reef species in a rapidly changing climate. In this commentary, we highlight the capacity and mechanisms for MMTA in reef species, propose a modified Price equation as a framework for assessing MMTA and recommend future areas of research to better understand how microorganisms contribute to the transgenerational acclimatisation of reef organisms, which is essential if we are to reliably predict the consequences of global change for reef ecosystems.

Development of Miocene-Pliocene reef trend, St. Croix, U. S. Virgin Islands

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gill, I.; Eby, D.E.; Hubbard, D.K.

1988-01-01

The Miocene-Pliocene reef trend on St. Croix, U.S. Virgin Islands, rims the present southern western coasts of the island and includes accompanying lagoonal and forereef facies. The reef trend was established on a foram-algal bank facies that represents basinal shallowing from the deep-water pelagic and hemipelagic facies of the Miocene Kingshill Limestone. Information on facies distribution and thickness is derived from rock exposures and 22 test wells drilled to a maximum depth of 91 m. The greatest thickness of the reef facies exists in a subsidiary graben on the south coast of St. Croix. The thickness of the reef sectionmore » in this locality is due to preservation of the section in a downdropped block. Reef faunas include extant corals, as well as several extinct genera. Extant corals (e.g. Montastrea annularis, Diploria sp., and Porites porites) and extinct corals (e.g., Stylophora affinis, Antillea bilobata, and Thysanus sp.) are the main reef frame-builders. Coralline algea and large benthic foraminifera are significant contributors to the sediments both prior to and during scleractinian reef growth. Dolomitization and calcite cementation occur prominantly in an area corresponding to a Holocene lagoon. The spatial distribution of the dolomite suggests that the lagoon is a Tertiary feature directly related to the dolomitization process. Stable isotopic values suggest dolomitization of fluids of elevated salinity.« less

Symbiont diversity may help coral reefs survive moderate climate change.

PubMed

Baskett, Marissa L; Gaines, Steven D; Nisbet, Roger M

2009-01-01

Given climate change, thermal stress-related mass coral-bleaching events present one of the greatest anthropogenic threats to coral reefs. While corals and their symbiotic algae may respond to future temperatures through genetic adaptation and shifts in community compositions, the climate may change too rapidly for coral response. To test this potential for response, here we develop a model of coral and symbiont ecological dynamics and symbiont evolutionary dynamics. Model results without variation in symbiont thermal tolerance predict coral reef collapse within decades under multiple future climate scenarios, consistent with previous threshold-based predictions. However, model results with genetic or community-level variation in symbiont thermal tolerance can predict coral reef persistence into the next century, provided low enough greenhouse gas emissions occur. Therefore, the level of greenhouse gas emissions will have a significant effect on the future of coral reefs, and accounting for biodiversity and biological dynamics is vital to estimating the size of this effect.

Extinction vulnerability of coral reef fishes.

PubMed

Graham, Nicholas A J; Chabanet, Pascale; Evans, Richard D; Jennings, Simon; Letourneur, Yves; Aaron Macneil, M; McClanahan, Tim R; Ohman, Marcus C; Polunin, Nicholas V C; Wilson, Shaun K

2011-04-01

With rapidly increasing rates of contemporary extinction, predicting extinction vulnerability and identifying how multiple stressors drive non-random species loss have become key challenges in ecology. These assessments are crucial for avoiding the loss of key functional groups that sustain ecosystem processes and services. We developed a novel predictive framework of species extinction vulnerability and applied it to coral reef fishes. Although relatively few coral reef fishes are at risk of global extinction from climate disturbances, a negative convex relationship between fish species locally vulnerable to climate change vs. fisheries exploitation indicates that the entire community is vulnerable on the many reefs where both stressors co-occur. Fishes involved in maintaining key ecosystem functions are more at risk from fishing than climate disturbances. This finding is encouraging as local and regional commitment to fisheries management action can maintain reef ecosystem functions pending progress towards the more complex global problem of stabilizing the climate. © 2011 Blackwell Publishing Ltd/CNRS.

Oman's coral reefs: A unique ecosystem challenged by natural and man-related stresses and in need of conservation.

PubMed

Burt, J A; Coles, S; van Lavieren, H; Taylor, O; Looker, E; Samimi-Namin, K

2016-04-30

Oman contains diverse and abundant reef coral communities that extend along a coast that borders three environmentally distinct water bodies, with corals existing under unique and often stressful environmental conditions. In recent years Oman's reefs have undergone considerable change due to recurrent predatory starfish outbreaks, cyclone damage, harmful algal blooms, and other stressors. In this review we summarize current knowledge of the biology and status of corals in Oman, particularly in light of recent stressors and projected future threats, and examine current reef management practices. Oman's coral communities occur in marginal environmental conditions for reefs, and hence are quite vulnerable to anthropogenic effects. We recommend a focus on developing conservation-oriented coral research to guide proactive management and expansion of the number and size of designated protected areas in Oman, particularly those associated with critical coral habitat. Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

Extinction vulnerability of coral reef fishes

PubMed Central

Graham, Nicholas A J; Chabanet, Pascale; Evans, Richard D; Jennings, Simon; Letourneur, Yves; Aaron MacNeil, M; McClanahan, Tim R; Öhman, Marcus C; Polunin, Nicholas V C; Wilson, Shaun K

2011-01-01

With rapidly increasing rates of contemporary extinction, predicting extinction vulnerability and identifying how multiple stressors drive non-random species loss have become key challenges in ecology. These assessments are crucial for avoiding the loss of key functional groups that sustain ecosystem processes and services. We developed a novel predictive framework of species extinction vulnerability and applied it to coral reef fishes. Although relatively few coral reef fishes are at risk of global extinction from climate disturbances, a negative convex relationship between fish species locally vulnerable to climate change vs. fisheries exploitation indicates that the entire community is vulnerable on the many reefs where both stressors co-occur. Fishes involved in maintaining key ecosystem functions are more at risk from fishing than climate disturbances. This finding is encouraging as local and regional commitment to fisheries management action can maintain reef ecosystem functions pending progress towards the more complex global problem of stabilizing the climate. PMID:21320260

Venturing in coral larval chimerism: a compact functional domain with fostered genotypic diversity

NASA Astrophysics Data System (ADS)

Rinkevich, Baruch; Shaish, Lee; Douek, Jacob; Ben-Shlomo, Rachel

2016-01-01

The globally distributed coral species Pocillopora damicornis is known to release either sexual or asexual derived planula-larvae in various reef locations. Using microsatellite loci as markers, we documented the release of asexually derived chimeric larvae (CL), originating from mosaicked maternal colonies that were also chimeras, at Thai and Philippines reefs. The CL, each presenting different combinations of maternal genotypic constituents, create genetically-complex sets of asexual propagules. This novel mode of inheritance in corals challenges classical postulations of sexual/asexual reproduction traits, as asexual derived CL represent an alliance between genotypes that significantly sways the recruits’ absolute fitness. This type of inherited chimerism, while enhancing intra-entity genetic heterogeneity, is an evolutionary tactic used to increase genetic-heterogeneity, primarily in new areas colonized by a limited number of larvae. Chimerism may also facilitate combat global change impacts by exhibiting adjustable genomic combinations of within-chimera traits that could withstand alterable environmental pressures, helping Pocillopora become a successful cosmopolitan species.

Making a model meaningful to coral reef managers in a developing nation: a case study of overfishing and rock anchoring in Indonesia.

PubMed

Maynard, Jeffrey A; Anthony, Kenneth R N; Afatta, Siham; Dahl-Tacconi, Nancy; Hoegh-Guldberg, Ove

2010-10-01

Most of the world's coral reefs line the coasts of developing nations, where impacts from intense and destructive fishing practices form critical conservation issues for managers. Overfishing of herbivorous fishes can cause phase shifts to macroalgal dominance, and fishers' use of rocks as anchors lowers coral cover, giving further competitive advantage to macroalgae. Overfishing and anchoring have been studied extensively, but the role of their interaction in lowering coral reef resilience has not been quantified formally. We analyzed the combined effects of overfishing and rock anchoring on a range of reef habitat types--varying from high coral and low macroalgae cover to low coral and high macroalgae cover--in a marine park in Indonesia. We parameterized a model of coral and algal dynamics with three intensities of anchoring and fishing pressure. Results of the model indicated that damage caused by rock anchoring was equal to or possibly more devastating to coral reefs in the area than the impact of overfishing. This is an important outcome for local managers, who usually have the funds to distribute less-damaging anchors, but normally are unable to patrol regularly and effectively enough to reduce the impact of overfishing. We translated model results into an interactive visual tool that allows managers to explore the benefits of reducing anchoring frequency and fishing pressure. The potential consequences of inaction were made clear: the likelihood that any of the reef habitats will be dominated in the future by macroalgae rather than corals depends on reducing anchoring frequency, fishing pressure, or both. The tool provides a platform for strengthened relationships between managers and conservationists and can facilitate the uptake of recommendations regarding resource allocation and management actions. Conservation efforts for coral reefs in developing nations are likely to benefit from transforming model projections of habitat condition into tools local managers can understand and interact with. © 2010 Society for Conservation Biology.

Ridge to reef assessment of metal concentration and mineralogy in rocks and sediments on St. John, U.S. Virgin Islands

NASA Astrophysics Data System (ADS)

Harrington, R. J.; Gray, S. C.; Ramos-Scharron, C. E.; O'Shea, B.

2012-12-01

Land development on the island of St. John, US Virgin Islands is increasing terrigenous sediment loads into coastal bays and this is adversely affecting its sensitive, near-shore coral reef systems. Accelerated erosion of by-products originating from igneous bedrock may contribute metal-rich sediment to ephemeral streams and bays around St. John. In order to determine how development is affecting the production and transportation of land-based metals from watersheds to reef environments, we compare the chemistry and mineralogy of bedrock and sediment of both an undeveloped and a developed watershed and their corresponding bays. Both watersheds are comprised of bedrock of similar lithology (Water Island Formation: plagiorhyolite and basalt). Our study objectives are to: 1) determine what metal elements could serve as reliable stable geochemical tracers to track the transport of land-derived sediments to reefs; 2) document the total change in metal concentrations from in-situ bedrock and sediment along travel paths as the sediment gets transported from the watersheds to the reefs; and 3) estimate erosion rates from active sediment sources and metal accumulation rates within the marine environment. Whole rock, soil, stream, shore and reef sediment samples were collected from both study areas to represent a ridge to reef progression of material as it is eroded from the bedrock and transported to the reefs. Samples of in-situ rock and sediments were collected by hand, while material representing sediment being eroded from the watersheds and settling in the ephemeral streams and bays was captured by terrestrial and marine sediment traps. Major and trace element concentrations and the mineralogy of rock and sediments were analyzed using X-ray fluorescence, petrography and X-ray diffraction. Analyses of bedrock samples reveal mineral and elemental compositions typical of basalt and plagiorhyolite. In hydrothermally altered bedrock Ba and K concentrations elevated above non-hydrothermally altered bedrock are detected. A chemical weathering index of bedrock and adjacent C and B soil horizons suggests that some major elements, such as Ca, K and Na, are chemically weathering from bedrock and soils. However, some major and trace elements that derive from terrigenous sources (FeO, Al2O3, TiO2, Cu, Zr) resist chemical weathering and are transported to the shore and reef within eroded terrestrial sediment. The concentrations of these metals in marine trap sediments are strongly correlated with percent terrigenous material (R2= 0.80 - 0.94, p: <0.0001). This suggests these elements can be used as tracers for sediment derived from terrestrial environments. Watershed terrestrial metals concentrations do not show a consistent pattern of change from ridge to reef, but are generally higher in the watershed than the shore and reef sites. Higher concentrations (5 to 50 times higher depending on the element) of terrigenous derived metals are detected below the developed watershed compared to the undeveloped watershed. These data support previous research showing higher rates of terrigenous sedimentation in the marine environments of developed bays. These geochemical data will be compared to a watershed-scale erosion analysis of both study areas to quantify metal flux rates in this type of sub-tropical island system.

Integrating observational and modelling systems for the management of the Great Barrier Reef

NASA Astrophysics Data System (ADS)

Baird, M. E.; Jones, E. M.; Margvelashvili, N.; Mongin, M.; Rizwi, F.; Robson, B.; Schroeder, T.; Skerratt, J.; Steven, A. D.; Wild-Allen, K.

2016-02-01

Observational and modelling systems provide two sources of knowledge that must be combined to provide a more complete view than either observations or models alone can provide. Here we describe the eReefs coupled hydrodynamic, sediment and biogeochemical model that has been developed for the Great Barrier Reef; and the multiple observations that are used to constrain the model. Two contrasting examples of model - observational integration are highlighted. First we explore the carbon chemistry of the waters above the reef, for which observations are accurate, but expensive and therefore sparse, while model behaviour is highly skilful. For carbon chemistry, observations are used to constrain model parameterisation and quantify model error, with the model output itself providing the most useable knowledge for management purposes. In contrast, ocean colour provides inaccurate, but cheap and spatially and temporally extensive observations. Thus observations are best combined with the model in a data assimilating framework, where a custom-designed optical model has been developed for the purposes of incorporating ocean colour observations. The future management of Great Barrier Reef water quality will be based on an integration of observing and modelling systems, providing the most robust information available.

Artificial Reefs Created by Electrolysis and Coral Transplantation: An Approach Ensuring the Compatibility of Environmental Protection and Diving Tourism

NASA Astrophysics Data System (ADS)

van Treeck, P.; Schuhmacher, H.

1999-08-01

Coral reefs are currently being subjected to increasing pressure caused by water sports, especially scuba diving. Highly complex reef coenoses are affected by mechanical breakage and the coverage of corals by resuspended sediments. As the ecological capacity of the biocoenosis is exceeded, sensitive species are suppressed and the community is impoverished. The conflict between the needs of nature conservation and the economic interests of diving tourism can be mitigated by the creation of artificial underwater attractions as reef substitutes. Specially designed underwater structures are ideal for many diving activities, which can be diverted from sensitive natural habitats in that way. It is also possible to develop model reef communities for training and environmental education purposes. Our new concept is based on the elegant solution, proposed by Hilbertz et al. (1977), of depositing calcium minerals from the seawater in situ by electrolysis. We report on experiments conducted near Aqaba (Red Sea) showing that it is feasible to transplant living coral fragments on to the substrate being developed by electrochemical processes. In this way, the formation of a diverse community on any structure desired can be considerably enhanced.

Boat noise prevents soundscape-based habitat selection by coral planulae.

PubMed

Lecchini, David; Bertucci, Frédéric; Gache, Camille; Khalife, Adam; Besson, Marc; Roux, Natacha; Berthe, Cecile; Singh, Shubha; Parmentier, Eric; Nugues, Maggy M; Brooker, Rohan M; Dixson, Danielle L; Hédouin, Laetitia

2018-06-18

Understanding the relationship between coral reef condition and recruitment potential is vital for the development of effective management strategies that maintain coral cover and biodiversity. Coral larvae (planulae) have been shown to use certain sensory cues to orient towards settlement habitats (e.g. the odour of live crustose coralline algae - CCA). However, the influence of auditory cues on coral recruitment, and any effect of anthropogenic noise on this process, remain largely unknown. Here, we determined the effect of protected reef (MPA), exploited reef (non-MPA) soundscapes, and a source of anthropogenic noise (boat) on the habitat preference for live CCA over dead CCA in the planula of two common Indo-Pacific coral species (Pocillopora damicornis and Acropora cytherea). Soundscapes from protected reefs significantly increased the phonotaxis of planulae of both species towards live CCA, especially when compared to boat noise. Boat noise playback prevented this preferential selection of live CCA as a settlement substrate. These results suggest that sources of anthropogenic noise such as motor boat can disrupt the settlement behaviours of coral planulae. Acoustic cues should be accounted for when developing management strategies aimed at maximizing larval recruitment to coral reefs.

Shell concrete pavement.

DOT National Transportation Integrated Search

1966-10-01

This report describes the testing performed with reef shell, clam shell and a combination of reef and clam shell used as coarse aggregate to determine if a low modulus concrete could be developed for use as a base material as an alternate to the pres...

Multiscale approach reveals that Cloudina aggregates are detritus and not in situ reef constructions

NASA Astrophysics Data System (ADS)

Mehra, Akshay; Maloof, Adam

2018-03-01

The earliest metazoans capable of biomineralization appeared during the late Ediacaran Period (635–541 Ma) in strata associated with shallow water microbial reefs. It has been suggested that some Ediacaran microbial reefs were dominated (and possibly built) by an abundant and globally distributed tubular organism known as Cloudina. If true, this interpretation implies that metazoan framework reef building—a complex behavior that is responsible for some of the largest bioconstructions and most diverse environments in modern oceans—emerged much earlier than previously thought. Here, we present 3D reconstructions of Cloudina populations, produced using an automated serial grinding and imaging system coupled with a recently developed neural network image classifier. Our reconstructions show that Cloudina aggregates are composed of transported remains while detailed field observations demonstrate that the studied reef outcrops contain only detrital Cloudina buildups, suggesting that Cloudina played a minor role in Ediacaran reef systems. These techniques have wide applicability to problems that require 3D reconstructions where physical separation is impossible and a lack of density contrast precludes tomographic imaging techniques.

Fifty million years of herbivory on coral reefs: fossils, fish and functional innovations

PubMed Central

Bellwood, D. R.; Goatley, C. H. R.; Brandl, S. J.; Bellwood, O.

2014-01-01

The evolution of ecological processes on coral reefs was examined based on Eocene fossil fishes from Monte Bolca, Italy and extant species from the Great Barrier Reef, Australia. Using ecologically relevant morphological metrics, we investigated the evolution of herbivory in surgeonfishes (Acanthuridae) and rabbitfishes (Siganidae). Eocene and Recent surgeonfishes showed remarkable similarities, with grazers, browsers and even specialized, long-snouted forms having Eocene analogues. These long-snouted Eocene species were probably pair-forming, crevice-feeding forms like their Recent counterparts. Although Eocene surgeonfishes likely played a critical role as herbivores during the origins of modern coral reefs, they lacked the novel morphologies seen in modern Acanthurus and Siganus (including eyes positioned high above their low-set mouths). Today, these forms dominate coral reefs in both abundance and species richness and are associated with feeding on shallow, exposed algal turfs. The radiation of these new forms, and their expansion into new habitats in the Oligocene–Miocene, reflects the second phase in the development of fish herbivory on coral reefs that is closely associated with the exploitation of highly productive short algal turfs. PMID:24573852

Fifty million years of herbivory on coral reefs: fossils, fish and functional innovations.

PubMed

Bellwood, D R; Goatley, C H R; Brandl, S J; Bellwood, O

2014-04-22

The evolution of ecological processes on coral reefs was examined based on Eocene fossil fishes from Monte Bolca, Italy and extant species from the Great Barrier Reef, Australia. Using ecologically relevant morphological metrics, we investigated the evolution of herbivory in surgeonfishes (Acanthuridae) and rabbitfishes (Siganidae). Eocene and Recent surgeonfishes showed remarkable similarities, with grazers, browsers and even specialized, long-snouted forms having Eocene analogues. These long-snouted Eocene species were probably pair-forming, crevice-feeding forms like their Recent counterparts. Although Eocene surgeonfishes likely played a critical role as herbivores during the origins of modern coral reefs, they lacked the novel morphologies seen in modern Acanthurus and Siganus (including eyes positioned high above their low-set mouths). Today, these forms dominate coral reefs in both abundance and species richness and are associated with feeding on shallow, exposed algal turfs. The radiation of these new forms, and their expansion into new habitats in the Oligocene-Miocene, reflects the second phase in the development of fish herbivory on coral reefs that is closely associated with the exploitation of highly productive short algal turfs.

Global Human Footprint on the Linkage between Biodiversity and Ecosystem Functioning in Reef Fishes

PubMed Central

Mora, Camilo; Aburto-Oropeza, Octavio; Ayala Bocos, Arturo; Ayotte, Paula M.; Banks, Stuart; Bauman, Andrew G.; Beger, Maria; Bessudo, Sandra; Booth, David J.; Brokovich, Eran; Brooks, Andrew; Chabanet, Pascale; Cinner, Joshua E.; Cortés, Jorge; Cruz-Motta, Juan J.; Cupul Magaña, Amilcar; DeMartini, Edward E.; Edgar, Graham J.; Feary, David A.; Ferse, Sebastian C. A.; Friedlander, Alan M.; Gaston, Kevin J.; Gough, Charlotte; Graham, Nicholas A. J.; Green, Alison; Guzman, Hector; Hardt, Marah; Kulbicki, Michel; Letourneur, Yves; López Pérez, Andres; Loreau, Michel; Loya, Yossi; Martinez, Camilo; Mascareñas-Osorio, Ismael; Morove, Tau; Nadon, Marc-Olivier; Nakamura, Yohei; Paredes, Gustavo; Polunin, Nicholas V. C.; Pratchett, Morgan S.; Reyes Bonilla, Héctor; Rivera, Fernando; Sala, Enric; Sandin, Stuart A.; Soler, German; Stuart-Smith, Rick; Tessier, Emmanuel; Tittensor, Derek P.; Tupper, Mark; Usseglio, Paolo; Vigliola, Laurent; Wantiez, Laurent; Williams, Ivor; Wilson, Shaun K.; Zapata, Fernando A.

2011-01-01

Difficulties in scaling up theoretical and experimental results have raised controversy over the consequences of biodiversity loss for the functioning of natural ecosystems. Using a global survey of reef fish assemblages, we show that in contrast to previous theoretical and experimental studies, ecosystem functioning (as measured by standing biomass) scales in a non-saturating manner with biodiversity (as measured by species and functional richness) in this ecosystem. Our field study also shows a significant and negative interaction between human population density and biodiversity on ecosystem functioning (i.e., for the same human density there were larger reductions in standing biomass at more diverse reefs). Human effects were found to be related to fishing, coastal development, and land use stressors, and currently affect over 75% of the world's coral reefs. Our results indicate that the consequences of biodiversity loss in coral reefs have been considerably underestimated based on existing knowledge and that reef fish assemblages, particularly the most diverse, are greatly vulnerable to the expansion and intensity of anthropogenic stressors in coastal areas. PMID:21483714

Effects of ocean acidification and sea-level rise on coral reefs

USGS Publications Warehouse

Yates, K.K.; Moyer, R.P.

2010-01-01

U.S. Geological Survey (USGS) scientists are developing comprehensive records of historical and modern coral reef growth and calcification rates relative to changing seawater chemistry resulting from increasing atmospheric CO2 from the pre-industrial period to the present. These records will provide the scientific foundation for predicting future impacts of ocean acidification and sea-level rise on coral reef growth. Changes in coral growth rates in response to past changes in seawater pH are being examined by using cores from coral colonies.

Recreational Diving Impacts on Coral Reefs and the Adoption of Environmentally Responsible Practices within the SCUBA Diving Industry.

PubMed

Roche, Ronan C; Harvey, Chloe V; Harvey, James J; Kavanagh, Alan P; McDonald, Meaghan; Stein-Rostaing, Vivienne R; Turner, John R

2016-07-01

Recreational diving on coral reefs is an activity that has experienced rapidly growing levels of popularity and participation. Despite providing economic activity for many developing coastal communities, the potential role of dive impacts in contributing to coral reef damage is a concern at heavily dived locations. Management measures to address this issue increasingly include the introduction of programmes designed to encourage environmentally responsible practices within the dive industry. We examined diver behaviour at several important coral reef dive locations within the Philippines and assessed how diver characteristics and dive operator compliance with an environmentally responsible diving programme, known as the Green Fins approach, affected reef contacts. The role of dive supervision was assessed by recording dive guide interventions underwater, and how this was affected by dive group size. Of the 100 recreational divers followed, 88 % made contact with the reef at least once per dive, with a mean (±SE) contact rate of 0.12 ± 0.01 per min. We found evidence that the ability of dive guides to intervene and correct diver behaviour in the event of a reef contact decreases with larger diver group sizes. Divers from operators with high levels of compliance with the Green Fins programme exhibited significantly lower reef contact rates than those from dive operators with low levels of compliance. The successful implementation of environmentally responsible diving programmes, which focus on influencing dive industry operations, can contribute to the management of human impacts on coral reefs.

Persistence and Change in Community Composition of Reef Corals through Present, Past, and Future Climates

PubMed Central

Edmunds, Peter J.; Adjeroud, Mehdi; Baskett, Marissa L.; Baums, Iliana B.; Budd, Ann F.; Carpenter, Robert C.; Fabina, Nicholas S.; Fan, Tung-Yung; Franklin, Erik C.; Gross, Kevin; Han, Xueying; Jacobson, Lianne; Klaus, James S.; McClanahan, Tim R.; O'Leary, Jennifer K.; van Oppen, Madeleine J. H.; Pochon, Xavier; Putnam, Hollie M.; Smith, Tyler B.; Stat, Michael; Sweatman, Hugh; van Woesik, Robert; Gates, Ruth D.

2014-01-01

The reduction in coral cover on many contemporary tropical reefs suggests a different set of coral community assemblages will dominate future reefs. To evaluate the capacity of reef corals to persist over various time scales, we examined coral community dynamics in contemporary, fossil, and simulated future coral reef ecosystems. Based on studies between 1987 and 2012 at two locations in the Caribbean, and between 1981 and 2013 at five locations in the Indo-Pacific, we show that many coral genera declined in abundance, some showed no change in abundance, and a few coral genera increased in abundance. Whether the abundance of a genus declined, increased, or was conserved, was independent of coral family. An analysis of fossil-reef communities in the Caribbean revealed changes in numerical dominance and relative abundances of coral genera, and demonstrated that neither dominance nor taxon was associated with persistence. As coral family was a poor predictor of performance on contemporary reefs, a trait-based, dynamic, multi-patch model was developed to explore the phenotypic basis of ecological performance in a warmer future. Sensitivity analyses revealed that upon exposure to thermal stress, thermal tolerance, growth rate, and longevity were the most important predictors of coral persistence. Together, our results underscore the high variation in the rates and direction of change in coral abundances on contemporary and fossil reefs. Given this variation, it remains possible that coral reefs will be populated by a subset of the present coral fauna in a future that is warmer than the recent past. PMID:25272143

A morphometric assessment and classification of coral reef spur and groove morphology

NASA Astrophysics Data System (ADS)

Duce, S.; Vila-Concejo, A.; Hamylton, S. M.; Webster, J. M.; Bruce, E.; Beaman, R. J.

2016-07-01

Spurs and grooves (SaGs) are a common and important feature of coral reef fore slopes worldwide. However, they are difficult to access and hence their morphodynamics and formation are poorly understood. We use remote sensing, with extensive ground truthing, to measure SaG morphometrics and environmental factors at 11,430 grooves across 17 reefs in the southern Great Barrier Reef, Australia. We revealed strong positive correlations between groove length, orientation and wave exposure with longer, more closely-spaced grooves oriented easterly reflecting the dominant swell regime. Wave exposure was found to be the most important factor controlling SaG distribution and morphology. Gradient of the upper reef slope was also an important limiting factor, with SaGs less likely to develop in steeply sloping (> 5°) areas. We used a subset of the morphometric data (11 reefs) to statistically define four classes of SaG. This classification scheme was tested on the remaining six reefs. SaGs in the four classes differ in morphology, groove substrate and coral cover. These differences provide insights into SaG formation mechanisms with implications to reef platform growth and evolution. We hypothesize SaG formation is dominated by coral growth processes at two classes and erosion processes at one class. A fourth class may represent relic features formed earlier in the Holocene transgression. The classes are comparable with SaGs elsewhere, suggesting the classification could be applied globally with the addition of new classes if necessary. While further research is required, we show remotely sensed SaG morphometrics can provide useful insights into reef platform evolution.

Contrasts within an outlier-reef system: Evidence for differential quaternary evolution, south Florida windward margin, U.S.A.

USGS Publications Warehouse

Lidz, B.H.; Shinn, E.A.; Hine, A.C.; Locker, S.D.

1997-01-01

Closely spaced, high-resolution, seismic-reflection profiles acquired off the upper Florida Keys (i.e., north) reveal a platform-margin reef-and-trough system grossly similar to, yet quite different from, that previously described off the lower Keys (i.e., south). Profiles and maps generated for both areas show that development was controlled by antecedent Pleistocene topography (presence or absence of an upper-slope bedrock terrace), sediment availability, fluctuating sea level, and coral growth rate and distribution. The north terrace is sediment-covered and exhibits linear, buried, low-relief, seismic features of unknown character and origin. The south terrace is essentially sediment-free and supports multiple, massive, high-relief outlier reefs. Uranium disequilibrium series dates on outlier-reef corals indicate a Pleistocene age (~83-84 ka). A massive Pleistocene reef with both aggradational (north) and progradational (south) aspects forms the modern margin escarpment landward of the terrace. Depending upon interpretation (the north margin-escarpment reef may or may not be an outlier reef), the north margin is either more advanced or less advanced than the south margin. During Holocene sea-level rise, Pleistocene bedrock was inundated earlier and faster first to the north (deeper offbank terrace), then to the south (deeper platform surface). Holocene overgrowth is thick (8 m) on the north outer-bank reefs but thin (0.3 m) on the south outlier reefs. Differential evolution resulted from interplay between fluctuating sea level and energy regime established by prevailing east-southeasterly winds and waves along an arcuate (ENE-WSW) platform margin.

Movement patterns of silvertip sharks ( Carcharhinus albimarginatus) on coral reefs

NASA Astrophysics Data System (ADS)

Espinoza, Mario; Heupel, Michelle. R.; Tobin, Andrew J.; Simpfendorfer, Colin A.

2015-09-01

Understanding how sharks use coral reefs is essential for assessing risk of exposure to fisheries, habitat loss, and climate change. Despite a wide Indo-Pacific distribution, little is known about the spatial ecology of silvertip sharks ( Carcharhinus albimarginatus), compromising the ability to effectively manage their populations. We examined the residency and movements of silvertip sharks in the central Great Barrier Reef (GBR). An array of 56 VR2W acoustic receivers was used to monitor shark movements on 17 semi-isolated reefs. Twenty-seven individuals tagged with acoustic transmitters were monitored from 70 to 731 d. Residency index to the study site ranged from 0.05 to 0.97, with a mean residency (±SD) of 0.57 ± 0.26, but most individuals were detected at or near their tagging reef. Clear seasonal patterns were apparent, with fewer individuals detected between September and February. A large proportion of the tagged population (>71 %) moved regularly between reefs. Silvertip sharks were detected less during daytime and exhibited a strong diel pattern in depth use, which may be a strategy for optimizing energetic budgets and foraging opportunities. This study provides the first detailed examination of the spatial ecology and behavior of silvertip sharks on coral reefs. Silvertip sharks remained resident at coral reef habitats over long periods, but our results also suggest this species may have more complex movement patterns and use larger areas of the GBR than common reef shark species. Our findings highlight the need to further understand the movement ecology of silvertip sharks at different spatial and temporal scales, which is critical for developing effective management approaches.

Variability in oceanographic barriers to coral larval dispersal: Do currents shape biodiversity?

NASA Astrophysics Data System (ADS)

Thompson, D. M.; Kleypas, J.; Castruccio, F.; Curchitser, E. N.; Pinsky, M. L.; Jönsson, B.; Watson, J. R.

2018-07-01

The global center of marine biodiversity is located in the western tropical Pacific in a region known as the "Coral Triangle" (CT). This region is also considered the most threatened of all coral reef regions, because multiple impacts, including rising temperatures and coral bleaching, have already caused high mortality of reef corals over large portions of the CT. Larval dispersal and recruitment play a critical role in reef recovery after such disturbances, but our understanding of reproductive connectivity between reefs is limited by a paucity of observations. Oceanographic modeling can provide an economical and efficient way to augment our understanding of reef connectivity, particularly over an area as large as the CT, where marine ecosystem management has become a priority. This work combines daily averaged surface current velocity and direction from a Regional Ocean Modeling System developed for the CT region (CT-ROMS) with a Lagrangian particle tracking tool (TRACMASS) to investigate the probability of larval transport between reefs for a typical broadcasting coral. A 47-year historical simulation (1960-2006) was used to analyze the potential connectivity, the physical drivers of larval transport, and its variability following bi-annual spawning events in April and September. Potential connectivity between reefs was highly variable from year to year, emphasizing the need for long simulations. The results suggest that although reefs in this region are highly self-seeded, comparatively rare long-distance dispersal events may play a vital role in shaping regional patterns of reef biodiversity and recovery following disturbance. The spatial pattern of coral "subpopulations," which are based on the potential connectivity between reefs, agrees with observed regional-scale patterns of biodiversity, suggesting that the physical barriers to larval dispersal are a first-order driver of coral biodiversity in the CT region. These physical barriers persist through the 21st Century when the model is forced with the Community Earth System Model (CESM) RCP8.5 climate scenario, despite some regional changes in connectivity between reefs.

Assessing the Diversity of Halimeda spp. on Pulley Ridge Mesophotic Reefs

NASA Astrophysics Data System (ADS)

Luzader, R. K.; Baco-Taylor, A.

2016-02-01

The Florida reef system contains an array of organisms that contribute to the development of the reef structure. These include calcifying green macroalgae of the genus Halimeda, which provides important ecosystem services by stabilizing the reefs through calcification. Halimeda is one of several groups of shallow water reef taxa with a depth range that extends into the mesophotic zone. It has been hypothesized the mesophotic reefs may serve as refugia for shallow water taxa impacted by climate change and other anthropogenic stressors. To test this hypothesis, in 2012-2015, the mesophotic reefs of Pulley Ridge and Dry Tortugas were sampled to assess genetic connectivity to the shallow water reefs of the Florida Keys. A diverse array of Halimeda species were represented on Pulley Ridge. Halimeda species are known to be difficult to identify and delineate morphologically and the taxonomy of Halimeda species has been revised several times based on molecular data. Thus, before connectivity of mesophotic Halimeda to shallow populations can be assessed, our first goal is to determine whether there is overlap of any of the Halimeda species between the mesophotic and shallow reefs, and then to determine if any of the species are present in sufficient abundance for population genetics. We sequenced portions of two chloroplast genes commonly used for algal phylogenetics and barcoding, tufA and rbcL, for at least 5 individuals of each morphotype collected on Dry Tortugas and the Pulley Ridge mesophotic reefs. Preliminary results suggest that Halimeda tuna, the species previously reported as the dominant Halimeda species on Pulley Ridge, was relatively uncommon. Morphological results and comparison of initial genetic results to sequences in GenBank suggest that H. goreaui is abundant at the Dry Tortugas site and H. fragilis, H. copiosa and H. discoidea are common on Pulley Ridge, indicating greater Halimeda diversity in the mesophotic reef system than previously documented.

Evaluation of coral reef carbonate production models at a global scale

NASA Astrophysics Data System (ADS)

Jones, N. S.; Ridgwell, A.; Hendy, E. J.

2015-03-01

Calcification by coral reef communities is estimated to account for half of all carbonate produced in shallow water environments and more than 25% of the total carbonate buried in marine sediments globally. Production of calcium carbonate by coral reefs is therefore an important component of the global carbon cycle; it is also threatened by future global warming and other global change pressures. Numerical models of reefal carbonate production are needed for understanding how carbonate deposition responds to environmental conditions including atmospheric CO2 concentrations in the past and into the future. However, before any projections can be made, the basic test is to establish model skill in recreating present-day calcification rates. Here we evaluate four published model descriptions of reef carbonate production in terms of their predictive power, at both local and global scales. We also compile available global data on reef calcification to produce an independent observation-based data set for the model evaluation of carbonate budget outputs. The four calcification models are based on functions sensitive to combinations of light availability, aragonite saturation (Ωa) and temperature and were implemented within a specifically developed global framework, the Global Reef Accretion Model (GRAM). No model was able to reproduce independent rate estimates of whole-reef calcification, and the output from the temperature-only based approach was the only model to significantly correlate with coral-calcification rate observations. The absence of any predictive power for whole reef systems, even when consistent at the scale of individual corals, points to the overriding importance of coral cover estimates in the calculations. Our work highlights the need for an ecosystem modelling approach, accounting for population dynamics in terms of mortality and recruitment and hence calcifier abundance, in estimating global reef carbonate budgets. In addition, validation of reef carbonate budgets is severely hampered by limited and inconsistent methodology in reef-scale observations.

Estimating the impact of oyster restoration scenarios on transient fish production

USGS Publications Warehouse

McCoy, Elizabeth; Borrett, Stuart R.; LaPeyre, Megan K.; Peterson, Bradley J.

2017-01-01

Oyster reef restoration projects are increasing in number both to enhance oyster density and to retain valuable ecosystem services provided by oyster reefs. Although some oyster restoration projects have demonstrated success by increasing density and biomass of transient fish, it still remains a challenge to quantify the effects of oyster restoration on transient fish communities. We developed a bioenergetics model to assess the impact of selected oyster reef restoration scenarios on associated transient fish species. We used the model to analyze the impact of changes in (1) oyster population carrying capacity; (2) oyster population growth rate; and (3) diet preference of transient fish on oyster reef development and associated transient fish species. Our model results indicate that resident fish biomass is directly affected by oyster restoration and oyster biomass, and oyster restoration can have cascading impacts on transient fish biomass. Furthermore, the results highlight the importance of a favorable oyster population growth rate during early restoration years, as it can lead to rapid increases in mean oyster biomass and biomass of transient fish species. The model also revealed that a transient fish's diet solely dependent on oyster reef-derived prey could limit the biomass of transient fish species, emphasizing the importance of habitat connectivity in estuarine areas to enhance transient fish species biomass. Simple bioenergetics models can be developed to understand the dynamics of a system and make qualitative predictions of management and restoration scenarios.

The influence of micro-topography and external bioerosion on coral-reef-building organisms: recruitment, community composition and carbonate production over time

NASA Astrophysics Data System (ADS)

Mallela, Jennie

2018-03-01

The continued health and function of tropical coral reefs is highly dependent on the ability of reef-building organisms to build large, complex, three-dimensional structures that continue to accrete and evolve over time. The recent deterioration of reef health globally, including loss of coral cover, has resulted in significant declines in architectural complexity at a large, reef-scape scale. Interestingly, the fine-scale role of micro-structure in initiating and facilitating future reef development and calcium carbonate production has largely been overlooked. In this study, experimental substrates with and without micro-ridges were deployed in the lagoon at One Tree Island for 34 months. This study assessed how the presence or absence of micro-ridges promoted recruitment by key reef-building sclerobionts (corals and encrusters) and their subsequent development at micro (mm) and macro (cm) scales. Experimental plates were examined after 11 and 34 months to assess whether long-term successional and calcification processes on different micro-topographies led to convergent or divergent communities over time. Sclerobionts were most prevalent in micro-grooves when they were available. Interestingly, in shallow lagoon reef sites characterised by shoals of small parrotfish and low urchin abundance, flat substrates were also successfully recruited to. Mean rates of carbonate production were 374 ± 154 (SD) g CaCO3 m-2 yr-1 within the lagoon. Substrates with micro-ridges were characterised by significantly greater rates of carbonate production than smooth substrates. The orientation of the substrate and period of immersion also significantly impacted rates of carbonate production, with CaCO3 on cryptic tiles increasing by 28% between 11 and 34 months. In contrast, rates on exposed tiles declined by 35% over the same time. In conclusion, even at sites characterised by small-sized parrotfish and low urchin density, micro-topography is an important settlement niche clearly favouring sclerobiont early life-history processes and subsequent carbonate production.

Subsurface Permian reef complexes of southern Tunisia: Shelf carbonate setting and paleogeographic implications

NASA Astrophysics Data System (ADS)

Zaafouri, Adel; Haddad, Sofiene; Mannaî-Tayech, Beya

2017-05-01

2-D seismic reflection sections, borehole data as well as published and unpublished data have been investigated to reconstruct the paleogeography of southern Tunisia during Middle to Late Permian times. Paleogeographical reconstruction based on the integration of petroleum well data and 2-D seismic facies interpretation shows three main depositional areas with very contrasting sedimentary pile. These are 1) a subsiding basin; 2) an outer shelf carbonate, and 3) an inner shelf carbonate. Based on typical electric responses of reef buildups to seismic wave, we shall urge that during Middle Permian times, the outer carbonate shelf was subject of reef barrier development. Lithology evidences from core samples show that reef framework correspond mainly to fossiliferous limestone and dolomite. The WNW-ESE recognized reef barrier led between latitudes 33° 10‧ 00″N and 33° 20‧ 00″N. The Tebaga of Medenine outcrop constitutes the northern-edge of this barrier. Westward it may be extended to Bir Soltane area whereas its extension eastward is still to be determined. Biogenic buildups took place preferentially over faulted Carboniferous and lower Paleozoic paleohighs resulting likely from the Hercynian orogeny. The subsiding basin is located north of Tebaga of Medenine outcrop where Upper Permian sedimentary sequence is made entirely of 4000 m deep marine green silty shale facies. These are ascribed to unorganized and chaotic reflectors. Inner carbonate shelf facies succession corresponds to a typical interbedding of shallow marine carbonate deposits, shale, dolomite, and anhydrite inducing parallel-layered of strong amplitude and good continuity reflectors. Also within the inner carbonate shelf patch reef or reef pinnacles have been identified based on their seismic signature particularly their low vertical development as compared to reef complexes. Southward, towards Sidi Toui area, the Upper Permian depositional sequence thins out and bears witness of land influences as entailed by the increase of silicoclastic sedimentary supply and the lack of marine fossil.

Assessing the Impacts of Experimentally Elevated Temperature on the Biological Composition and Molecular Chaperone Gene Expression of a Reef Coral

PubMed Central

Mayfield, Anderson B.; Wang, Li-Hsueh; Tang, Pei-Ciao; Fan, Tung-Yung; Hsiao, Yi-Yuong; Tsai, Ching-Lin; Chen, Chii-Shiarng

2011-01-01

Due to the potential for increasing ocean temperatures to detrimentally impact reef-building corals, there is an urgent need to better understand not only the coral thermal stress response, but also natural variation in their sub-cellular composition. To address this issue, while simultaneously developing a molecular platform for studying one of the most common Taiwanese reef corals, Seriatopora hystrix, 1,092 cDNA clones were sequenced and characterized. Subsequently, RNA, DNA and protein were extracted sequentially from colonies exposed to elevated (30°C) temperature for 48 hours. From the RNA phase, a heat shock protein-70 (hsp70)-like gene, deemed hsp/c, was identified in the coral host, and expression of this gene was measured with real-time quantitative PCR (qPCR) in both the host anthozoan and endosymbiotic dinoflagellates (genus Symbiodinium). While mRNA levels were not affected by temperature in either member, hsp/c expression was temporally variable in both and co-varied within biopsies. From the DNA phase, host and Symbiodinium hsp/c genome copy proportions (GCPs) were calculated to track changes in the biological composition of the holobiont during the experiment. While there was no temperature effect on either host or Symbiodinium GCP, both demonstrated significant temporal variation. Finally, total soluble protein was responsive to neither temperature nor exposure time, though the protein/DNA ratio varied significantly over time. Collectively, it appears that time, and not temperature, is a more important driver of the variation in these parameters, highlighting the need to consider natural variation in both gene expression and the molecular make-up of coral holobionts when conducting manipulative studies. This represents the first study to survey multiple macromolecules from both compartments of an endosymbiotic organism with methodologies that reflect their dual-compartmental nature, ideally generating a framework for assessing molecular-level changes within corals and other endosymbioses exposed to changes in their environment. PMID:22046302

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hoekman, S. Kent; Broch, Broch; Robbins, Curtis

The primary objective of this project was to utilize a flexible, energy-efficient facility, called the DRI Renewable Energy Experimental Facility (REEF) to support various renewable energy research and development (R&D) efforts, along with education and outreach activities. The REEF itself consists of two separate buildings: (1) a 1200-ft2 off-grid capable house and (2) a 600-ft2 workshop/garage to support larger-scale experimental work. Numerous enhancements were made to DRI's existing renewable power generation systems, and several additional components were incorporated to support operation of the REEF House. The power demands of this house are satisfied by integrating and controlling PV arrays, solarmore » thermal systems, wind turbines, an electrolyzer for renewable hydrogen production, a gaseous-fuel internal combustion engine/generator set, and other components. Cooling needs of the REEF House are satisfied by an absorption chiller, driven by solar thermal collectors. The REEF Workshop includes a unique, solar air collector system that is integrated into the roof structure. This system provides space heating inside the Workshop, as well as a hot water supply. The Workshop houses a custom-designed process development unit (PDU) that is used to convert woody biomass into a friable, hydrophobic char that has physical and chemical properties similar to low grade coal. Besides providing sufficient space for operation of this PDU, the REEF Workshop supplies hot water that is used in the biomass treatment process. The DRI-REEF serves as a working laboratory for evaluating and optimizing the performance of renewable energy components within an integrated, residential-like setting. The modular nature of the system allows for exploring alternative configurations and control strategies. This experimental test bed is also highly valuable as an education and outreach tool both in providing an infrastructure for student research projects, and in highlighting renewable energy features to the public.« less

Physical exploration for uranium during 1951 in the Silver Reef district, Washington County, Utah

USGS Publications Warehouse

Stugard, Frederick

1954-01-01

During 1951 a joint exploration program of the most promising uraniferous areas in the Silver Reef district was made by the U.S. Geological Survey and the U.S. atomic Energy Commission. A U.S. Bureau of Mines drill crew, on contract to the Atomic Energy Commission, did 2,450 feet of diamond drilling under the geological supervision of the U.S. Geological Survey. The purpose of the drilling was to delineate broadly the favorable ground for commercial development of the uranium deposits. Ten drill holes were located around Pumpkin Point, which is the northeastern end of Buckeye Reef, to probe for extensions of small ore sheets mined on the Point in fine-grained sandstones of the Chinle formation. Three additional holes were located around Tecumseh Hill to probe for extensions of the small showings of uranium-bearing rocks of Buckeye Reef. Only one trace of uranium mineral was detected in the 13 drill holes by logging of drill cores, gamma-ray logging of the holes, and analysis of many core splits from favorable lithology. Extensive traversing with Geiger counters throughout the district and detailed geologic mapping of areas on Buckeye Reef and on East Reef indicate that the chances of discovering significant uranium deposits in the Silver Reef district are very poor, because of: highly variable lithology, closely faulted structure, and obliteration of the shallow uranium-bearing lenses by silver mining. Most of the available ore in the district was in the Pumpkin Point area and has been mined during 1950 to 1953. No ore reserves can be computed for the district before further development work. The most favorable remaining area in the district is now being explored by the operators with Atomic Energy Commission supervision.

A new, high-resolution global mass coral bleaching database

PubMed Central

Rickbeil, Gregory J. M.; Heron, Scott F.

2017-01-01

Episodes of mass coral bleaching have been reported in recent decades and have raised concerns about the future of coral reefs on a warming planet. Despite the efforts to enhance and coordinate coral reef monitoring within and across countries, our knowledge of the geographic extent of mass coral bleaching over the past few decades is incomplete. Existing databases, like ReefBase, are limited by the voluntary nature of contributions, geographical biases in data collection, and the variations in the spatial scale of bleaching reports. In this study, we have developed the first-ever gridded, global-scale historical coral bleaching database. First, we conducted a targeted search for bleaching reports not included in ReefBase by personally contacting scientists and divers conducting monitoring in under-reported locations and by extracting data from the literature. This search increased the number of observed bleaching reports by 79%, from 4146 to 7429. Second, we employed spatial interpolation techniques to develop annual 0.04° × 0.04° latitude-longitude global maps of the probability that bleaching occurred for 1985 through 2010. Initial results indicate that the area of coral reefs with a more likely than not (>50%) or likely (>66%) probability of bleaching was eight times higher in the second half of the assessed time period, after the 1997/1998 El Niño. The results also indicate that annual maximum Degree Heating Weeks, a measure of thermal stress, for coral reefs with a high probability of bleaching increased over time. The database will help the scientific community more accurately assess the change in the frequency of mass coral bleaching events, validate methods of predicting mass coral bleaching, and test whether coral reefs are adjusting to rising ocean temperatures. PMID:28445534

A new, high-resolution global mass coral bleaching database.

PubMed

Donner, Simon D; Rickbeil, Gregory J M; Heron, Scott F

2017-01-01

Episodes of mass coral bleaching have been reported in recent decades and have raised concerns about the future of coral reefs on a warming planet. Despite the efforts to enhance and coordinate coral reef monitoring within and across countries, our knowledge of the geographic extent of mass coral bleaching over the past few decades is incomplete. Existing databases, like ReefBase, are limited by the voluntary nature of contributions, geographical biases in data collection, and the variations in the spatial scale of bleaching reports. In this study, we have developed the first-ever gridded, global-scale historical coral bleaching database. First, we conducted a targeted search for bleaching reports not included in ReefBase by personally contacting scientists and divers conducting monitoring in under-reported locations and by extracting data from the literature. This search increased the number of observed bleaching reports by 79%, from 4146 to 7429. Second, we employed spatial interpolation techniques to develop annual 0.04° × 0.04° latitude-longitude global maps of the probability that bleaching occurred for 1985 through 2010. Initial results indicate that the area of coral reefs with a more likely than not (>50%) or likely (>66%) probability of bleaching was eight times higher in the second half of the assessed time period, after the 1997/1998 El Niño. The results also indicate that annual maximum Degree Heating Weeks, a measure of thermal stress, for coral reefs with a high probability of bleaching increased over time. The database will help the scientific community more accurately assess the change in the frequency of mass coral bleaching events, validate methods of predicting mass coral bleaching, and test whether coral reefs are adjusting to rising ocean temperatures.

27 years of benthic and coral community dynamics on turbid, highly urbanised reefs off Singapore.

PubMed

Guest, J R; Tun, K; Low, J; Vergés, A; Marzinelli, E M; Campbell, A H; Bauman, A G; Feary, D A; Chou, L M; Steinberg, P D

2016-11-08

Coral cover on reefs is declining globally due to coastal development, overfishing and climate change. Reefs isolated from direct human influence can recover from natural acute disturbances, but little is known about long term recovery of reefs experiencing chronic human disturbances. Here we investigate responses to acute bleaching disturbances on turbid reefs off Singapore, at two depths over a period of 27 years. Coral cover declined and there were marked changes in coral and benthic community structure during the first decade of monitoring at both depths. At shallower reef crest sites (3-4 m), benthic community structure recovered towards pre-disturbance states within a decade. In contrast, there was a net decline in coral cover and continuing shifts in community structure at deeper reef slope sites (6-7 m). There was no evidence of phase shifts to macroalgal dominance but coral habitats at deeper sites were replaced by unstable substrata such as fine sediments and rubble. The persistence of coral dominance at chronically disturbed shallow sites is likely due to an abundance of coral taxa which are tolerant to environmental stress. In addition, high turbidity may interact antagonistically with other disturbances to reduce the impact of thermal stress and limit macroalgal growth rates.

27 years of benthic and coral community dynamics on turbid, highly urbanised reefs off Singapore

PubMed Central

Guest, J. R.; Tun, K.; Low, J.; Vergés, A.; Marzinelli, E. M.; Campbell, A. H.; Bauman, A. G.; Feary, D. A.; Chou, L. M.; Steinberg, P. D.

2016-01-01

Coral cover on reefs is declining globally due to coastal development, overfishing and climate change. Reefs isolated from direct human influence can recover from natural acute disturbances, but little is known about long term recovery of reefs experiencing chronic human disturbances. Here we investigate responses to acute bleaching disturbances on turbid reefs off Singapore, at two depths over a period of 27 years. Coral cover declined and there were marked changes in coral and benthic community structure during the first decade of monitoring at both depths. At shallower reef crest sites (3–4 m), benthic community structure recovered towards pre-disturbance states within a decade. In contrast, there was a net decline in coral cover and continuing shifts in community structure at deeper reef slope sites (6–7 m). There was no evidence of phase shifts to macroalgal dominance but coral habitats at deeper sites were replaced by unstable substrata such as fine sediments and rubble. The persistence of coral dominance at chronically disturbed shallow sites is likely due to an abundance of coral taxa which are tolerant to environmental stress. In addition, high turbidity may interact antagonistically with other disturbances to reduce the impact of thermal stress and limit macroalgal growth rates. PMID:27824083

How accessible are coral reefs to people? A global assessment based on travel time.

PubMed

Maire, Eva; Cinner, Joshua; Velez, Laure; Huchery, Cindy; Mora, Camilo; Dagata, Stephanie; Vigliola, Laurent; Wantiez, Laurent; Kulbicki, Michel; Mouillot, David

2016-04-01

The depletion of natural resources has become a major issue in many parts of the world, with the most accessible resources being most at risk. In the terrestrial realm, resource depletion has classically been related to accessibility through road networks. In contrast, in the marine realm, the impact on living resources is often framed into the Malthusian theory of human density around ecosystems. Here, we develop a new framework to estimate the accessibility of global coral reefs using potential travel time from the nearest human settlement or market. We show that 58% of coral reefs are located < 30 min from the nearest human settlement. We use a case study from New Caledonia to demonstrate that travel time from the market is a strong predictor of fish biomass on coral reefs. We also highlight a relative deficit of protection on coral reef areas near people, with disproportional protection on reefs far from people. This suggests that conservation efforts are targeting low-conflict reefs or places that may already be receiving de facto protection due to their isolation. Our global assessment of accessibility in the marine realm is a critical step to better understand the interplay between humans and resources. © 2016 John Wiley & Sons Ltd/CNRS.

Evaluating the human impact on groundwater quality discharging into a coastal reef lagoon

NASA Astrophysics Data System (ADS)

Rebolledo-Vieyra, M.; Hernandez-Terrones, L.; Soto, M.; Lecossec, A.; Monroy-Rios, E.

2008-12-01

The Eastern coast of the Yucatan Peninsula has the fastest growth rate in Mexico and groundwater is the only source of drinking water in the region. The consequences of the lack of proper infrastructure to collect and treat wastewater and the impact of human activities on the quality of groundwater are addressed. The groundwater in the coastal aquifer of Quintana Roo (SE Mexico) discharges directly into the ocean. In addition, the coral reef of the Eastern Yucatan Peninsula is part of the Mesoamerican Coral Reef System, one of the largest in the world. The interaction of the reef-lagoon hydraulics with the coastal aquifer of Puerto Morelos (NE Yucatan Peninsula), and a major input of NH4, SO4, SiO2, as a consequence of the use of septic tanks and the lack of modern wastewater treatment plants are presented. No seasonal parameters differences were observed, suggesting that groundwater composition reaching the reef lagoon is not changing seasonally. A conceptual model of the coastal aquifer was developed, in order to explain how the human activities are impacting directly on the groundwater quality that, potentially, will have a direct impact on the coral reef. The protection and conservation of coral reefs must be directly related with a policy of sound management of coastal aquifers and wastewater treatment.

Simulations of Long-Term Community Dynamics in Coral Reefs - How Perturbations Shape Trajectories

PubMed Central

Kubicek, Andreas; Muhando, Christopher; Reuter, Hauke

2012-01-01

Tropical coral reefs feature extraordinary biodiversity and high productivity rates in oligotrophic waters. Due to increasing frequencies of perturbations – anthropogenic and natural – many reefs are under threat. Such perturbations often have devastating effects on these unique ecosystems and especially if they occur simultaneously and amplify each other's impact, they might trigger a phase shift and create irreversible conditions. We developed a generic, spatially explicit, individual-based model in which competition drives the dynamics of a virtual benthic reef community – comprised of scleractinian corals and algae – under different environmental settings. Higher system properties, like population dynamics or community composition arise through self-organization as emergent properties. The model was parameterized for a typical coral reef site at Zanzibar, Tanzania and features coral bleaching and physical disturbance regimes as major sources of perturbations. Our results show that various types and modes (intensities and frequencies) of perturbations create diverse outcomes and that the switch from high diversity to single species dominance can be evoked by small changes in a key parameter. Here we extend the understanding of coral reef resilience and the identification of key processes, drivers and respective thresholds, responsible for changes in local situations. One future goal is to provide a tool which may aid decision making processes in management of coral reefs. PMID:23209397

Coral reefs for coastal protection: A new methodological approach and engineering case study in Grenada.

PubMed

Reguero, Borja G; Beck, Michael W; Agostini, Vera N; Kramer, Philip; Hancock, Boze

2018-03-15

Coastal communities in tropical environments are at increasing risk from both environmental degradation and climate change and require urgent local adaptation action. Evidences show coral reefs play a critical role in wave attenuation but relatively little direct connection has been drawn between these effects and impacts on shorelines. Reefs are rarely assessed for their coastal protection service and thus not managed for their infrastructure benefits, while widespread damage and degradation continues. This paper presents a systematic approach to assess the protective role of coral reefs and to examine solutions based on the reef's influence on wave propagation patterns. Portions of the shoreline of Grenville Bay, Grenada, have seen acute shoreline erosion and coastal flooding. This paper (i) analyzes the historical changes in the shoreline and the local marine, (ii) assess the role of coral reefs in shoreline positioning through a shoreline equilibrium model first applied to coral reef environments, and (iii) design and begin implementation of a reef-based solution to reduce erosion and flooding. Coastline changes in the bay over the past 6 decades are analyzed from bathymetry and benthic surveys, historical imagery, historical wave and sea level data and modeling of wave dynamics. The analysis shows that, at present, the healthy and well-developed coral reefs system in the southern bay keeps the shoreline in equilibrium and stable, whereas reef degradation in the northern bay is linked with severe coastal erosion. A comparison of wave energy modeling for past bathymetry indicates that degradation of the coral reefs better explains erosion than changes in climate and historical sea level rise. Using this knowledge on how reefs affect the hydrodynamics, a reef restoration solution is designed and studied to ameliorate the coastal erosion and flooding. A characteristic design provides a modular design that can meet specific engineering, ecological and implementation criteria. Four pilot units were implemented in 2015 and are currently being field-tested. This paper presents one of the few existing examples available to date of a reef restoration project designed and engineered to deliver risk reduction benefits. The case study shows how engineering and ecology can work together in community-based adaptation. Our findings are particularly important for Small Island States on the front lines of climate change, who have the most to gain from protecting and managing coral reefs as coastal infrastructure. Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.

Biology and ecology of the vulnerable holothuroid, Stichopus herrmanni, on a high-latitude coral reef on the Great Barrier Reef

NASA Astrophysics Data System (ADS)

Wolfe, Kennedy; Byrne, Maria

2017-12-01

Tropical aspidochirotid holothuroids are among the largest coral reef invertebrates, but gaps remain in our understanding of their ecological roles in lagoon sediment habitats, a vast component of coral-reef ecosystems. Stichopus herrmanni, listed as vulnerable (IUCN), is currently a major fishery species on the Great Barrier Reef (GBR) and throughout the Indo-Pacific. It is critical to characterise how this species interacts with its environment to understand how its removal may impact ecosystem functionality. We investigated seasonal variation in movement, bioturbation, feeding and gonad development of S. herrmanni over 3 yr at One Tree Reef, which has been a no-take area for decades. We determined the direct influence of the deposit-feeding activity of S. herrmanni on sediment turnover and granulometry, and on the abundance of infauna and benthic productivity in a comprehensive in situ analysis of tropical holothuroid feeding ecology. This species is highly mobile with identifiable individuals exhibiting site fidelity over 3 yr. With the potential to turn over an estimated 64-250 kg individual-1 yr-1, S. herrmanni is a major bioturbator. Stichopus herrmanni is a generalist feeder and influences trophic interactions by altering the abundance of infauna and microalgae. Stichopus herrmanni exhibited decreased feeding activity and gonad development in winter, the first documentation of a seasonal disparity in the bioturbation activity of a tropical holothuroid. Sediment digestion and dissolution by S. herrmanni has the potential to influence seawater chemistry, a particularly important feature in a changing ocean. Our results provide essential baseline data on the functional roles of this ecologically important species to inform development of ecosystem-based bêche-de-mer fisheries management on the GBR.

Diel ontogenetic shift in parasitic activity in a gnathiid isopod on Caribbean coral reefs

NASA Astrophysics Data System (ADS)

Sikkel, P. C.; Ziemba, R. E.; Sears, W. T.; Wheeler, J. C.

2009-06-01

Ontogenetic niche shifts are characteristic of organisms with complex life cycles such as many marine invertebrates. Research has focused primarily on changes in habitat or diet. However, ontogenetic changes can also occur in the temporal pattern of foraging. Gnathiid isopods feed on fish blood throughout their larval stages and are the primary food item for cleaning organisms on coral reefs. At sites in Australia and the Caribbean, gnathiid larvae exhibit size-related differences in diel activity. However, it is unclear whether this is due to interspecific or intraspecific variation in behavior. Fish were deployed in cages near sunset on shallow reefs off St. John, U.S. Virgin Islands and allowed to be infected with larval gnathiids. Larvae collected from fish retrieved near midnight developed into adults, with most developing into females. In contrast, approximately 80% of gnathiids collected after first light developed into second or third stage larvae, and nearly all of the remaining, large, individuals developed into males. Comparison of ITS2 gene regions from individuals collected in emergence traps from the same reefs during the day versus during the night revealed no differences in this highly variable region. Thus, gnathiid larvae at this locality shift their time of activity as they develop, and larvae developing into males remain active over a longer time period than those developing into females.

Towards a new paleotemperature proxy from reef coral occurrences.

PubMed

Lauchstedt, Andreas; Pandolfi, John M; Kiessling, Wolfgang

2017-09-05

Global mean temperature is thought to have exceeded that of today during the last interglacial episode (LIG, ~ 125,000 yrs b.p.) but robust paleoclimate data are still rare in low latitudes. Occurrence data of tropical reef corals may provide new proxies of low latitude sea-surface temperatures. Using modern reef coral distributions we developed a geographically explicit model of sea surface temperatures. Applying this model to coral occurrence data of the LIG provides a latitudinal U-shaped pattern of temperature anomalies with cooler than modern temperatures around the equator and warmer subtropical climes. Our results agree with previously published estimates of LIG temperatures and suggest a poleward broadening of the habitable zone for reef corals during the LIG.

Rapid transition in the structure of a coral reef community: the effects of coral bleaching and physical disturbance.

PubMed

Ostrander, G K; Armstrong, K M; Knobbe, E T; Gerace, D; Scully, E P

2000-05-09

Coral reef communities are in a state of change throughout their geographical range. Factors contributing to this change include bleaching (the loss of algal symbionts), storm damage, disease, and increasing abundance of macroalgae. An additional factor for Caribbean reefs is the aftereffects of the epizootic that reduced the abundance of the herbivorous sea urchin, Diadema antillarum. Although coral reef communities have undergone phase shifts, there are few studies that document the details of such transitions. We report the results of a 40-month study that documents changes in a Caribbean reef community affected by bleaching, hurricane damage, and an increasing abundance of macroalgae. The study site was in a relatively pristine area of the reef surrounding the island of San Salvador in the Bahamas. Ten transects were sampled every 3-9 months from November 1994 to February 1998. During this period, the corals experienced a massive bleaching event resulting in a significant decline in coral abundance. Algae, especially macroalgae, increased in abundance until they effectively dominated the substrate. The direct impact of Hurricane Lili in October 1996 did not alter the developing community structure and may have facilitated increasing algal abundance. The results of this study document the rapid transition of this reef community from one in which corals and algae were codominant to a community dominated by macroalgae. The relatively brief time period required for this transition illustrates the dynamic nature of reef communities.

Miocene reef carbonates of Mariana Islands

DOE Office of Scientific and Technical Information (OSTI.GOV)

Siegrist, H.G. Jr.

1988-02-01

Miocene carbonates in the southern Mariana Islands are impressive for their lithologic diversity, thicknesses (over 250 m), and geographic extent (> 20% combined outcrop coverage over four major high islands: Guam, Rota, Tinian and Saipan). Sections are dominated either by lagoonal algal-foraminiferal wackestones and mudstones with locally abundant high-energy shelly-skeletal facies, or by rubbly to muddy, fore-reef-to-bank deposits of packstones and grainstones with highly diverse and variable biogenic clasts. Fresh to deeply weathered volcaniclastic material may comprise at least 80% of some high-energy fore-reef facies, whereas lagoonal and bank deposits usually contain less than 0.5% terrigenous material. Surprisingly, the Miocenemore » in the Marianas lacks almost completely any reef-core facies. Several poorly developed coral-rich mounds on Saipan and localized laminated red algal buildups on Guam appear to constitute the extant reef-wall facies in the Miocene. The lack of buildups may be a matter of differential survival; it may result from headland erosion and benching associated with emergence of narrow reef tracts as has been postulated by others for south Guam. Alternatively, the authors are proposing that Miocene bathymetry and the volume of terrigenous influx militated against significant reef core formation. Radiometric age dating of these reef carbonates has proven unsuccessful because pervasive diagenesis has transformed the entire Miocene section into low-magnesium calcite with minor and occasional dolomite. Freshwater phreatic diagenesis accounts for the principal porosity variation and trace element distribution.« less

A linked land-sea modeling framework to inform ridge-to-reef management in high oceanic islands

PubMed Central

Whittier, Robert; Stamoulis, Kostantinos A.; Bremer, Leah L.; Jupiter, Stacy; Friedlander, Alan M.; Poti, Matthew; Guannel, Greg; Kurashima, Natalie; Winter, Kawika B.; Toonen, Robert; Conklin, Eric; Wiggins, Chad; Knudby, Anders; Goodell, Whitney; Burnett, Kimberly; Yee, Susan; Htun, Hla; Oleson, Kirsten L. L.; Wiegner, Tracy; Ticktin, Tamara

2018-01-01

Declining natural resources have led to a cultural renaissance across the Pacific that seeks to revive customary ridge-to-reef management approaches to protect freshwater and restore abundant coral reef fisheries. Effective ridge-to-reef management requires improved understanding of land-sea linkages and decision-support tools to simultaneously evaluate the effects of terrestrial and marine drivers on coral reefs, mediated by anthropogenic activities. Although a few applications have linked the effects of land cover to coral reefs, these are too coarse in resolution to inform watershed-scale management for Pacific Islands. To address this gap, we developed a novel linked land-sea modeling framework based on local data, which coupled groundwater and coral reef models at fine spatial resolution, to determine the effects of terrestrial drivers (groundwater and nutrients), mediated by human activities (land cover/use), and marine drivers (waves, geography, and habitat) on coral reefs. We applied this framework in two ‘ridge-to-reef’ systems (Hā‘ena and Ka‘ūpūlehu) subject to different natural disturbance regimes, located in the Hawaiian Archipelago. Our results indicated that coral reefs in Ka‘ūpūlehu are coral-dominated with many grazers and scrapers due to low rainfall and wave power. While coral reefs in Hā‘ena are dominated by crustose coralline algae with many grazers and less scrapers due to high rainfall and wave power. In general, Ka‘ūpūlehu is more vulnerable to land-based nutrients and coral bleaching than Hā‘ena due to high coral cover and limited dilution and mixing from low rainfall and wave power. However, the shallow and wave sheltered back-reef areas of Hā‘ena, which support high coral cover and act as nursery habitat for fishes, are also vulnerable to land-based nutrients and coral bleaching. Anthropogenic sources of nutrients located upstream from these vulnerable areas are relevant locations for nutrient mitigation, such as cesspool upgrades. In this study, we located coral reefs vulnerable to land-based nutrients and linked them to priority areas to manage sources of human-derived nutrients, thereby demonstrating how this framework can inform place-based ridge-to-reef management. PMID:29538392

Coral reefs: threats and conservation in an era of global change.

PubMed

Riegl, Bernhard; Bruckner, Andy; Coles, Steve L; Renaud, Philip; Dodge, Richard E

2009-04-01

Coral reefs are iconic, threatened ecosystems that have been in existence for approximately 500 million years, yet their continued ecological persistence seems doubtful at present. Anthropogenic modification of chemical and physical atmospheric dynamics that cause coral death by bleaching and newly emergent diseases due to increased heat and irradiation, as well as decline in calcification caused by ocean acidification due to increased CO(2), are the most important large-scale threats. On more local scales, overfishing and destructive fisheries, coastal construction, nutrient enrichment, increased runoff and sedimentation, and the introduction of nonindigenous invasive species have caused phase shifts away from corals. Already approximately 20% of the world's reefs are lost and approximately 26% are under imminent threat. Conservation science of coral reefs is well advanced, but its practical application has often been lagging. Societal priorites, economic pressures, and legal/administrative systems of many countries are more prone to destroy rather than conserve coral-reef ecosystems. Nevertheless, many examples of successful conservation exist from the national level to community-enforced local action. When effectively managed, protected areas have contributed to regeneration of coral reefs and stocks of associated marine resources. Local communities often support coral-reef conservation in order to raise income potential associated with tourism and/or improved resource levels. Coral reefs create an annual income in S-Florida alone of over $4 billion. Thus, no conflict between development, societal welfare, and coral-reef conservation needs to exist. Despite growing threats, it is not too late for decisive action to protect and save these economically and ecologically high-value ecosystems. Conservation science plays a critical role in designing effective strategies.

An anomalous Pt-Pd occurrence below the JM reef, Stillwater Complex, Montana

DOE Office of Scientific and Technical Information (OSTI.GOV)

McIlveen, C.L.

1993-04-01

The late Archean Stillwater Complex, in south-central Montana, consists of the Basal, Ultramafic, and Banded series. The Lower Banded series contains several anomalous platinum-group element (PGE) occurrences, with the JM reef having the highest values (an average of 6,250 ppb Pt and 24,000 ppb Pd) and greatest lateral persistence. The Coors anomaly, below the reef, is near the middle of the complex. This zone contains bronzite cumulates which range from 100--14,600 ppb Pt, with an average of 1,250 ppb. Pt:Pd ratios in the Coors zone average 1:1.7, compared to 1:3.8 in the reef. Sulfides associated with the PGE's show immisciblemore » textures indicating a magmatic origin similar to the reef. The anomaly lies approximately 200 m below the reef along the Banded-Ultramafic series contact where the Gabbronorite 1 zone is virtually absent. Layering between the reef and the Ultramafic series bronzitite is irregular and thin compared to the normal 400-m thickness exposed elsewhere in the complex. Bronzitites which contain the PGE's are podiform and often pegmatoidal. Norites adjacent to the bronzities also tend to be pegmatoidal and sulfide-bearing, but contain an average of only 75 ppb Pt. Microprobe analyses of bronzites in this zone show abruptly lower Mg/(Mg + Fe) of 0.77 compared to 0.83 in the uppermost bronzitite. The disrupted layering and thinning in the Coors area may have formed by slumping, scouring, or thermal erosion in the cumulate pile during crystallization. Coors mineralization may have developed through processes similar to those in the JM reef. However, occurrence of the coors mineralization with irregular layering and higher PGE ratios suggest an origin different than that in the reef.« less

Seasonal Dynamics of Fish Assemblages on Breakwaters and Natural Rocky Reefs in a Temperate Estuary: Consistent Assemblage Differences Driven by Sub-Adults

PubMed Central

Fowler, Ashley M.; Booth, David J.

2013-01-01

Development of infrastructure around cities is rapidly increasing the amount of artificial substrate (termed artificial reef, ‘AR’) in coastal marine habitats. However, effects of ARs on marine communities remain unknown, because it is unclear whether ARs can maintain similar communities to natural reefs. We investigated whether well-established (> 30 years old) breakwaters could consistently approximate fish assemblages on interspersed rocky reefs in a temperate estuary over 6 consecutive seasons using regular visual surveys between June 2009 (winter) and November 2010 (spring). We examined whether assemblage differences between reef types were driven by differences in juvenile recruitment, or were related to differences in older life-stages. Assemblages on both reef types were dominated by juveniles (61% of individuals) and sub-adults (34% of individuals). Seasonal fluctuations in assemblage parameters (species richness, diversity, sub-adult abundance) were similar between reef types, and levels of species diversity and assemblage composition were generally comparable. However, abundance and species richness were consistently higher (1.9-7.6 and 1.3-2.6 times, respectively) on breakwaters. These assemblage differences could not be explained by differences in juvenile recruitment, with seasonal patterns of recruitment and juvenile species found to be similar between reef types. In contrast, abundances of sub-adults were consistently higher (1.1-12 times) at breakwaters, and assemblage differences appeared to be driven by this life-stage. Our results indicate that breakwaters in temperate estuaries are capable of supporting abundant and diverse fish assemblages with similar recruitment process to natural reefs. However, breakwaters may not approximate all aspects of natural assemblage structure, with differences maintained by a single-life stage in some cases. PMID:24086634

Predictions of turbidity due to enhanced sediment resuspension resulting from sea-level rise on a fringing Coral Reef: Evidence from Molokai, Hawaii

USGS Publications Warehouse

Ogston, A.S.; Field, M.E.

2010-01-01

Accelerating sea-level rise associated with global climate change will affect sedimentary processes on coral reefs and other shoreline environments by increasing energy and sediment resuspension. On reefs, sedimentation is known to increase coral stress and bleaching as particles that settle on coral surfaces interfere with photosynthesis and feeding, and turbidity induced by suspended sediment reduces incident light levels. Using relationships developed from observations of wave orbital velocity, water-surface elevation, and suspended-sediment concentration on a fringing reef flat of Molokai, Hawaii, predictions of the average daily maximum in suspended-sediment concentration increase from ~11 mg/l to ~20 mg/l with 20 cm sea-level rise. The duration of time concentrations exceeds 10 mg/l increases from 9 to 37. An evaluation of the reduction of wave energy flux through breaking and frictional dissipation across the reef flat shows an increase of ~80 relative to the present will potentially reach the shoreline as sea level increases by 20 cm. Where the shoreline exists on low, flat terrain, the increased energy could cause significant erosion of the shoreline. Considering the sediment budget, the sediment flux is predicted to increase and removal of fine-grained sediment may be expedited on some fringing reefs, and sediment in storage on the inner reef could ultimately be reduced. However, increased shoreline erosion may add sediment and offset removal from the reef flat. The shifts in sediment availability and transport that will occur as result of a modest increase in sea level have wide application to fringing coral reefs elsewhere, as well as other shoreline environments. ?? 2010 the Coastal Education & Research Foundation (CERF).

Tectonic control of Middle Devonian reef building in the Mechra ben Abbou (northern Rehamna, Morocco)Contrôle tectonique de l'édification des récifs Dévonien moyen de Mechra ben Abbou (Rehamna, Maroc)

NASA Astrophysics Data System (ADS)

El Kamel, Fouad; El Hassani, Ahmed; Mohsine, Assia; Remmal, Toufik

2000-01-01

In the carbonated platform of Upper Emsian to Givetian age, the reef edification is previous to, and contemporaneous with, a tilted block tectonic that has favoured the bioconstruction in its upper part. The tectonic expression is illustrated by several instability marks, such as tension faults, progressive unconformity and the resulting landslide, observed in both the reef development zone and the external platform.

A robust operational model for predicting where tropical cyclone waves damage coral reefs

NASA Astrophysics Data System (ADS)

Puotinen, Marji; Maynard, Jeffrey A.; Beeden, Roger; Radford, Ben; Williams, Gareth J.

2016-05-01

Tropical cyclone (TC) waves can severely damage coral reefs. Models that predict where to find such damage (the ‘damage zone’) enable reef managers to: 1) target management responses after major TCs in near-real time to promote recovery at severely damaged sites; and 2) identify spatial patterns in historic TC exposure to explain habitat condition trajectories. For damage models to meet these needs, they must be valid for TCs of varying intensity, circulation size and duration. Here, we map damage zones for 46 TCs that crossed Australia’s Great Barrier Reef from 1985-2015 using three models - including one we develop which extends the capability of the others. We ground truth model performance with field data of wave damage from seven TCs of varying characteristics. The model we develop (4MW) out-performed the other models at capturing all incidences of known damage. The next best performing model (AHF) both under-predicted and over-predicted damage for TCs of various types. 4MW and AHF produce strikingly different spatial and temporal patterns of damage potential when used to reconstruct past TCs from 1985-2015. The 4MW model greatly enhances both of the main capabilities TC damage models provide to managers, and is useful wherever TCs and coral reefs co-occur.

A robust operational model for predicting where tropical cyclone waves damage coral reefs.

PubMed

Puotinen, Marji; Maynard, Jeffrey A; Beeden, Roger; Radford, Ben; Williams, Gareth J

2016-05-17

Tropical cyclone (TC) waves can severely damage coral reefs. Models that predict where to find such damage (the 'damage zone') enable reef managers to: 1) target management responses after major TCs in near-real time to promote recovery at severely damaged sites; and 2) identify spatial patterns in historic TC exposure to explain habitat condition trajectories. For damage models to meet these needs, they must be valid for TCs of varying intensity, circulation size and duration. Here, we map damage zones for 46 TCs that crossed Australia's Great Barrier Reef from 1985-2015 using three models - including one we develop which extends the capability of the others. We ground truth model performance with field data of wave damage from seven TCs of varying characteristics. The model we develop (4MW) out-performed the other models at capturing all incidences of known damage. The next best performing model (AHF) both under-predicted and over-predicted damage for TCs of various types. 4MW and AHF produce strikingly different spatial and temporal patterns of damage potential when used to reconstruct past TCs from 1985-2015. The 4MW model greatly enhances both of the main capabilities TC damage models provide to managers, and is useful wherever TCs and coral reefs co-occur.

Polymorphic Microsatellite Loci for Endemic Mussismilia Corals (Anthozoa: Scleractinia) of the Southwest Atlantic Ocean.

PubMed

Zilberberg, Carla; Peluso, Lívia; Marques, Jessica A; Cunha, Haydée

2014-01-01

In the Southwest Atlantic, coral reefs are unique due to their growth form, low species richness, and a high level of endemic coral species, which include the most important reef builders. Although these reefs are the only true biogenic reefs in the South Atlantic Ocean, population genetic studies are still lacking. The purpose of this study was to develop a suite of microsatellite loci to help gain insights into the population diversity and connectivity of the endemic scleractinian coral with the largest distributional range along the Southwest Atlantic coast, Mussismilia hispida Fourteen microsatellite loci were characterized, and their degree of polymorphism was analyzed in 33 individuals. The number of alleles varied between 4 and 17 per loci, and H o varied between 0.156 and 0.928, with 2 loci showing significant heterozygote deficiency. Cross-amplification tests on the other 2 species of the genus (Mussismilia braziliensis and Mussismilia harttii) demonstrated that these markers are suitable for studies of population diversity and structure of all 3 species of Mussismilia Because they are the most important reef builders in the Southwest Atlantic, the developed microsatellite loci may be important tools for connectivity and conservation studies of these endemic corals. © The American Genetic Association 2014. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Changes in Reef Fish Abundances Associated with the Introduction of Indo-Pacific Lionfish to the Florida Keys National Marine Sanctuary: a Twenty Year Time Series.

NASA Astrophysics Data System (ADS)

Hepner, M.; Muller-Karger, F. E.; Gittings, S.; Stallings, C.

2016-02-01

The Marine Biodiversity Observation Network (MBON) is a partnership between academic, private, and government researchers seeking to understand how marine biodiversity changes over long periods of time. In this context, a study of the multi-agency Reef Visual Census (RVC) data, collected over twenty years in the Florida Keys National Marine Sanctuary (FKNMS), was analyzed to measure possible changes in reef fish abundances as a result of possible predation by lionfish predation or due to related trophic cascading. Lionfish were first sighted in the FKNMS in January 2009, with abundances and frequency of occurrence increasing three to six fold throughout the sanctuary by 2011. Their high consumption rates of smaller fish, coupled with their rapidly increasing densities may be having a significant effect on coral reef fish communities. The study compares the natural variability in reef fish abundances from 1994-2009 in the FKNMS, 15 years prior to the first lionfish detected in the sanctuary, to changes in reef fish abundances 5 years after the invasion. The MBON project also aims to develop environmental DNA (eDNA) technology for conducting biodiversity assessments. eDNA is an emerging technique that seeks to quantify biodiversity in an area by obtaining genetic material directly from environmental samples (soil, sediment, water, etc.) without any obvious signs of biological source material. All marine organisms shed DNA into their surrounding habitat, leaving a "fingerprint." Similar to forensic science, the DNA can be collected from seawater and analyzed to determine what species were recently present. The MBON team is evaluating whether eDNA can be used to adequately monitor reef fish biodiversity in coral reef ecosystems. We will compare species detected in our samples to the taxonomic composition of reef fish communities at the sample site as recorded over the past twenty years in the Reef Visual Census data.

The oldest Quaternary ooids and young reefs in the eastern Indian Ocean, evidence from the Northwest Shelf of Australia, IODP Expedition 356.

NASA Astrophysics Data System (ADS)

Gallagher, S. J.; Reuning, L.; Himmler, T.; Henderiks, J.; De Vleeschouwer, D.; Groeneveld, J.; Fulthorpe, C.; Bogus, K.; Expedition 356 Scientists, I.

2016-12-01

Modern reefs are common in the Indian Ocean off the west coast of Australia (south of 15°S) where the warm Leeuwin Current extends their modern distribution to 29°S. Two key features that distinguish these tropical from non-tropical carbonates are the presence of coral reefs and ooids. Coral reefs are generally confined to seawater >18°C. Ooids form at temperatures >20°C with salinities >37‰. Modern ooids are forming in the hypersaline Shark Bay and are well known from late Quaternary strata in the region. Globally, marine ooids have been interpreted to be direct evidence of physiochemical precipitation from seawater during periods of elevated alkalinity and supersaturation. Their occurrence in the subsurface of the Northwest Shelf of Australia (NWS) may be used as sea surface temperature, palaeobathymetry and aridity indices. However, the longer-term history of reefs and ooids is not well constrained in the NWS. IODP expedition 356 cored a series of sections down dip from the Houtman-Abrolhos (29°S) and Barrow Island reefs (22°S) and up dip from the Rowley Shoals (18°S) to determine their age and origin. The stratigraphy of the cored sections was mapped using regional seismic data to constrain the age of reef onset. Coring also yielded several horizons of pre-late Quaternary ooids. Our analyses reveals that reefs from 22°S to 30°S are younger than 600,000 years old and that ooids are present in strata up to 750,000 years old. We suggest stronger Leeuwin Current activity related to an enhanced Indonesian Throughflow and increased aridity triggered tropical carbonate expansion on the Northwest Shelf during the Middle Pleistocene Transition. Knowledge of the timing and circumstances that triggered tropical reef development in the Indo-Pacific in the past is critical if we are to understand the resilience of modern reefs with future climate change.

Science and management of coral reefs: problems and prospects

NASA Astrophysics Data System (ADS)

Wells, S. M.

1995-11-01

It should be recognised that many principles of reef management do not need further research, as they involve changing human behaviour and activities in order to remove or reduce impacts on reefs. Much of the time of a reef manager is taken up with social, economic and political issues: the integration of reef management into broad coastal zone management objectives; the development of community participation and co-management; and the organisation of training and education pro-grammes so that people in countries where reefs are located are able to take responsibility for their sustainable management. Perhaps the main obstacle to be overcome is poor communication (Harmon 1994). Many reef scientists are already strongly convinced of the need to communicate their results and the implications of these for management and conservation policy (Hatcher et al. 1989), but they may however need to understand that reef managers are not always able or willing to act on their advice because of political, economic or social factors. Pure research is increasingly being conducted within a framework of goals identified as important to society. Funding is invariably easier to obtain if it can be demonstrated that the research will have some ultimate benefit in management terms, and much research is being commissioned because of the need for practical solutions. As the complexity of management becomes more apparent and managers themselves call for more scientific support and advice, the role that science has to play in perceiving and defining problems, understanding the mechanisms involved and strategically assessing potential solutions, becomes more central. Often, only a slight adjustment to a project is required in order for data to be collected that is of direct value to a reef manager.Partnerships built between scientists and managers engaged in adaptive management efforts may lead to more rapid progress in managing reefs and may banish the `science and management' dichotomy once and for all.

Catchment management and the Great Barrier Reef.

PubMed

Brodie, J; Christie, C; Devlin, M; Haynes, D; Morris, S; Ramsay, M; Waterhouse, J; Yorkston, H

2001-01-01

Pollution of coastal regions of the Great Barrier Reef is dominated by runoff from the adjacent catchment. Catchment land-use is dominated by beef grazing and cropping, largely sugarcane cultivation, with relatively minor urban development. Runoff of sediment, nutrients and pesticides is increasing and for nitrogen is now four times the natural amount discharged 150 years ago. Significant effects and potential threats are now evident on inshore reefs, seagrasses and marine animals. There is no effective legislation or processes in place to manage agricultural pollution. The Great Barrier Reef Marine Park Act does not provide effective jurisdiction on the catchment. Queensland legislation relies on voluntary codes and there is no assessment of the effectiveness of the codes. Integrated catchment management strategies, also voluntary, provide some positive outcomes but are of limited success. Pollutant loads are predicted to continue to increase and it is unlikely that current management regimes will prevent this. New mechanisms to prevent continued degradation of inshore ecosystems of the Great Barrier Reef World Heritage Area are urgently needed.

Bathymetric distribution of foraminifera in Jamaican reef environments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martin, R.E.; Liddell, W.D.

1985-02-01

Recent foraminifera inhabiting Jamaican north-coast fringing reefs display variations in distributional patterns that are related to bathymetry and reef morphology. Sediment samples containing foraminifera were collected along a profile that traversed the back reef (depth 1-2 m), fore-reef terrace (3-15 m), fore-reef escarpment (15-27 m), fore-reef slope (30-55 m), and upper deep fore reef (70 m). Approximately 150 species distributed among 80 genera were identified from the samples. Preliminary analyses indicate that diversity values (S, H') are lowest on the fore-reef terrace (79, 3.0, respectively), increase similarly in back-reef and fore-reef escarpment and slope settings (93, 3.4), and are highestmore » on the deep fore reef (109, 3.7). Larger groupings (suborders) exhibit distinct bathymetric trends with miliolids occurring more commonly in back-reef (comprising 51% of the fauna) than in fore-reef (28%) zones, whereas agglutinated and planktonic species occur more commonly in deeper reef (> 15 m, 9% and 4%, respectively) than in shallower reef zones (< 15 m, 3%, and 0.5%, respectively). Among the more common species Amphistegina gibbosa (Rotolina) is much more abundant in fore-reef (3%) environments, and Sorites marginalis (Miliolina) occurs almost exclusively in the back reef, where it comprises 5.5% of the fauna. Q-mode cluster analysis, involving all species collected, enabled the delineation of back-reef, shallow fore-reef, and deeper fore-reef biofacies, also indicating the potential utility of foraminiferal distributions in detailed paleoenvironment interpretations of ancient reef settings.« less

Assessment of human activities impact on groundwater quality discharging into a reef lagoon

NASA Astrophysics Data System (ADS)

Rebolledo-Vieyra, M.; Hernandez, L.; Paytan, A.; Merino-Ibarra, M.; Lecossec, A.; Soto, M.

2010-03-01

The Eastern coast of the Yucatan Peninsula has the fastest growth rate in Mexico and groundwater is the only source of drinking water in the region. The consequences of the lack of proper infrastructure to collect and treat wastewater and the impact of human activities on the quality of groundwater are addressed. The groundwater in the coastal aquifer of Quintana Roo (SE Mexico) discharges directly into the ocean (Submarine Groundwater Discharges). In addition, the coral reef of the Eastern Yucatan Peninsula is part of the Mesoamerican Coral Reef System, one of the largest in the world. The interaction of the reef-lagoon hydraulics with the coastal aquifer of Puerto Morelos (NE Yucatan Peninsula), and a major input of NH4, SO4, SiO2, as a consequence of the use of septic tanks and the lack of modern wastewater treatment plants are presented. A conceptual model of the coastal aquifer was developed, in order to explain how the human activities are impacting directly on the groundwater quality that, potentially, will have a direct impact on the coral reef. The protection and conservation of coral reefs must be directly related with a policy of sound management of coastal aquifers and wastewater treatment.

Predatory fish depletion and recovery potential on Caribbean reefs.

PubMed

Valdivia, Abel; Cox, Courtney Ellen; Bruno, John Francis

2017-03-01

The natural, prehuman abundance of most large predators is unknown because of the lack of historical data and a limited understanding of the natural factors that control their populations. Determining the supportable predator biomass at a given location (that is, the predator carrying capacity) would help managers to optimize protection and would provide site-specific recovery goals. We assess the relationship between predatory reef fish biomass and several anthropogenic and environmental variables at 39 reefs across the Caribbean to (i) estimate their roles determining local predator biomass and (ii) determine site-specific recovery potential if fishing was eliminated. We show that predatory reef fish biomass tends to be higher in marine reserves but is strongly negatively related to human activities, especially coastal development. However, human activities and natural factors, including reef complexity and prey abundance, explain more than 50% of the spatial variation in predator biomass. Comparing site-specific predator carrying capacities to field observations, we infer that current predatory reef fish biomass is 60 to 90% lower than the potential supportable biomass in most sites, even within most marine reserves. We also found that the scope for recovery varies among reefs by at least an order of magnitude. This suggests that we could underestimate unfished biomass at sites that provide ideal conditions for predators or greatly overestimate that of seemingly predator-depleted sites that may have never supported large predator populations because of suboptimal environmental conditions.

Project Overview: A Reef Manager's Guide to Coral Bleaching ...

EPA Pesticide Factsheets

The purpose of this report is to provide the latest scientific knowledge and discuss available management options to assist local and regional managers in responding effectively to mass coral bleaching events. Background A Reef Manager’s Guide to Coral Bleaching is the result of a collaborative effort by over 50 scientists and managers to: (1) share the best available scientific information on climate-related coral bleaching; and (2) compile a tool kit of currently available strategies for adaptive management of coral reefs in a changing climate. The result is a compendium of current information, tools, and practical suggestions to aid managers in their efforts to protect reefs in a way that maximizes reef resilience in the face of continuing climate change. The Guide is a joint publication of the National Oceanic and Atmospheric Administration, the Great Barrier Reef Marine Park Authority, and The World Conservation Union, with author contributions from a variety of international partners from government agencies, non-governmental organizations, and academic institutions. EPA’s Office of Research and Development was a major contributor to the Guide through authorship and participation in the final review and editing process for the entire report. A Reef Manager’s Guide to Coral Bleaching is the result of a collaborative effort by over 50 scientists and managers to: (1) share the best available scientific information on climate-related coral blea

Ocean acidification: Linking science to management solutions using the Great Barrier Reef as a case study.

PubMed

Albright, Rebecca; Anthony, Kenneth R N; Baird, Mark; Beeden, Roger; Byrne, Maria; Collier, Catherine; Dove, Sophie; Fabricius, Katharina; Hoegh-Guldberg, Ove; Kelly, Ryan P; Lough, Janice; Mongin, Mathieu; Munday, Philip L; Pears, Rachel J; Russell, Bayden D; Tilbrook, Bronte; Abal, Eva

2016-11-01

Coral reefs are one of the most vulnerable ecosystems to ocean acidification. While our understanding of the potential impacts of ocean acidification on coral reef ecosystems is growing, gaps remain that limit our ability to translate scientific knowledge into management action. To guide solution-based research, we review the current knowledge of ocean acidification impacts on coral reefs alongside management needs and priorities. We use the world's largest continuous reef system, Australia's Great Barrier Reef (GBR), as a case study. We integrate scientific knowledge gained from a variety of approaches (e.g., laboratory studies, field observations, and ecosystem modelling) and scales (e.g., cell, organism, ecosystem) that underpin a systems-level understanding of how ocean acidification is likely to impact the GBR and associated goods and services. We then discuss local and regional management options that may be effective to help mitigate the effects of ocean acidification on the GBR, with likely application to other coral reef systems. We develop a research framework for linking solution-based ocean acidification research to practical management options. The framework assists in identifying effective and cost-efficient options for supporting ecosystem resilience. The framework enables on-the-ground OA management to be the focus, while not losing sight of CO2 mitigation as the ultimate solution. Copyright © 2016 Elsevier Ltd. All rights reserved.

Response of reef corals on a fringing reef flat to elevated suspended-sediment concentrations: Molokaʻi, Hawaiʻi

PubMed Central

Jokiel, Paul L.; Storlazzi, Curt D.; Field, Michael E.; Lager, Claire V.; Lager, Dan

2014-01-01

A long-term (10 month exposure) experiment on effects of suspended sediment on the mortality, growth, and recruitment of the reef corals Montipora capitata and Porites compressa was conducted on the shallow reef flat off south Molokaʻi, Hawaiʻi. Corals were grown on wire platforms with attached coral recruitment tiles along a suspended solid concentration (SSC) gradient that ranged from 37 mg l−1 (inshore) to 3 mg l−1 (offshore). Natural coral reef development on the reef flat is limited to areas with SSCs less than 10 mg l−1 as previously suggested in the scientific literature. However, the experimental corals held at much higher levels of turbidity showed surprisingly good survivorship and growth. High SSCs encountered on the reef flat reduced coral recruitment by one to three orders of magnitude compared to other sites throughout Hawaiʻi. There was a significant correlation between the biomass of macroalgae attached to the wire growth platforms at the end of the experiment and percentage of the corals showing mortality. We conclude that lack of suitable hard substrate, macroalgal competition, and blockage of recruitment on available substratum are major factors accounting for the low natural coral coverage in areas of high turbidity. The direct impact of high turbidity on growth and mortality is of lesser importance. PMID:25653896

Miocene reef carbonates of Mariana Islands

DOE Office of Scientific and Technical Information (OSTI.GOV)

Siegrist, H.G. Jr.

1988-01-01

Miocene carbonates in the southern Mariana Islands are impressive for their lithologic diversity, thicknesses (over 250 m), and geographic extend (>20% combined outcrop coverage over four major high islands: Guam, Rota, Tinian and Saipan). Sections are dominated either by lagoonal algal-foraminiferal wackestones and mudstones with locally abundant high-energy shelly-skeletal facies, or by rubbly to muddy, fore-reef-to-bank deposits of packstones and grainstones with highly diverse and variable biogenic clasts. Fresh to deeply weathered volcaniclastic material may comprise at least 80% of some high-energy fore-reef facies, whereas lagoonal and bank deposits usually contain less than 0.5% terrigenous material. Surprisingly, the Miocene inmore » the Marianas lacks almost completely any reef-core facies. Several poorly developed coral-rich mounds on Saipan and localized laminated red algal buildups on Guam appear to constitute the extant reef-wall facies in the Miocene. The lack of buildups may be a matter of differential survival; it may result from headland erosion and benching associated with emergency of narrow reef tracts as has been postulated by others for south Guam. Radiometric age dating of these reef carbonates has proven unsuccessful because pervasive diagenesis has transformed the entire Miocene section into low-magnesium calcite with minor and occasional dolomite. Freshwater phreatic diagenesis accounts for the principal porosity variation and trace element distribution.« less

Response of reef corals on a fringing reef flat to elevated suspended-sediment concentrations: Moloka‘i, Hawai‘i

USGS Publications Warehouse

Jokiel, Paul L.; Rodgers, Ku'ulei S.; Storlazzi, Curt D.; Field, Michael E.; Lager, Claire V.; Lager, Dan

2014-01-01

A long-term (10 month exposure) experiment on effects of suspended sediment on the mortality, growth, and recruitment of the reef corals Montipora capitata and Porites compressa was conducted on the shallow reef flat off south Molokaʻi, Hawaiʻi. Corals were grown on wire platforms with attached coral recruitment tiles along a suspended solid concentration (SSC) gradient that ranged from 37 mg l−1 (inshore) to 3 mg l−1(offshore). Natural coral reef development on the reef flat is limited to areas with SSCs less than 10 mg l−1 as previously suggested in the scientific literature. However, the experimental corals held at much higher levels of turbidity showed surprisingly good survivorship and growth. High SSCs encountered on the reef flat reduced coral recruitment by one to three orders of magnitude compared to other sites throughout Hawaiʻi. There was a significant correlation between the biomass of macroalgae attached to the wire growth platforms at the end of the experiment and percentage of the corals showing mortality. We conclude that lack of suitable hard substrate, macroalgal competition, and blockage of recruitment on available substratum are major factors accounting for the low natural coral coverage in areas of high turbidity. The direct impact of high turbidity on growth and mortality is of lesser importance.

ELEVATED TEMPERATURE AND ULTRAVIOLET LIGHT AFFECT CONDITION OF REEF BUILDING CORALS

EPA Science Inventory

Abstract and Poster for the EPA Science Forum.

Reef-building corals are declining throughout the world, even at locations with low human populations. Declines have been linked to global changes in land use and climate change. EPA's Office of Research and Development is inv...

Impacts of Artificial Reefs on Surrounding Ecosystems

NASA Astrophysics Data System (ADS)

Manoukian, Sarine

Artificial reefs are becoming a popular biological and management component in shallow water environments characterized by soft seabed, representing both important marine habitats and tools to manage coastal fisheries and resources. An artificial reef in the marine environment acts as an open system with exchange of material and energy, altering the physical and biological characteristics of the surrounding area. Reef stability will depend on the balance of scour, settlement, and burial resulting from ocean conditions over time. Because of the unstable nature of sediments, they require a detailed and systematic investigation. Acoustic systems like high-frequency multibeam sonar are efficient tools in monitoring the environmental evolution around artificial reefs, whereas water turbidity can limit visual dive and ROV inspections. A high-frequency multibeam echo sounder offers the potential of detecting fine-scale distribution of reef units, providing an unprecedented level of resolution, coverage, and spatial definition. How do artificial reefs change over time in relation to the coastal processes? How accurately does multibeam technology map different typologies of artificial modules of known size and shape? How do artificial reefs affect fish school behavior? What are the limitations of multibeam technology for investigating fish school distribution as well as spatial and temporal changes? This study addresses the above questions and presents results of a new approach for artificial reef seafloor mapping over time, based upon an integrated analysis of multibeam swath bathymetry data and geoscientific information (backscatter data analysis, SCUBA observations, physical oceanographic data, and previous findings on the geology and sedimentation processes, integrated with unpublished data) from Senigallia artificial reef, northwestern Adriatic Sea (Italy) and St. Petersburg Beach Reef, west-central Florida continental shelf. A new approach for observation of fish aggregations associated with Senigallia reef based on the analysis of multibeam backscatter data in the water column is also explored. The settlement of the reefs and any terrain change are investigated over time providing a useful description of the local hydrodynamics and geological processes. All the artificial structures (made up by water-based concrete for Senigallia reef and mainly steel for St. Petersburg Beach reef) are identified and those showing substantial horizontal and/or vertical movements are analyzed in detail. Most artificial modules of Senigallia reef are not intact and scour signatures are well depicted around them, indicating reversals of the local current. This is due to both the wind pattern and to the quite close arrangement of the reef units that tend to deflect the bottom flow. As regards to the St. Petersburg Beach reef, all the man-made steel units are still in their upright position. Only a large barge shows a gradual collapse of its south side, and presents well-developed scouring at its east-northeast side, indicating dominant bottom flow from west-southwest to east-northeast. While an overall seafloor depth shallowing of about 0.30 m from down-current deposits was observed for Senigallia reef, an overall deepening of about 0.08 m due to scour was observed at the St. Petersburg Beach reef. Based on the backscatter data interpretation, surficial sediments are coarser in the vicinities of both artificial reefs than corresponding surrounding sediments. Scouring reveals this coarser layer underneath the prevalent mud sediment at Senigallia reef, and the predominant silt sediment at St. Petersburg Beach reef. In the ten years of Senigalia reef study, large-scale variations between clay and silt appear to be directly linked to large flood events that have occurred just prior to the change. As regards the water column investigation, acoustic backscatter from fish aggregations gives detailed information on their morphology and spatial distribution. In addition, relative fish biomass estimates can be extrapolated. Results suggest that most of the fish aggregations are generally associated with the artificial modules showing a tendency for mid- and bottom-water depth distribution than for the surface waters. This study contributes to understanding the changes in artificial reefs over time in relation to coastal processes. Moreover, the preliminary results concerning the water column backscatter data represents progress in fisheries acoustics research as a result of three-dimensional acoustics. They demonstrate the benefits of multibeam sonar as a tool to investigate and quantify size distribution and geometry of fish aggregations associated with shallow marine habitats.

Long-term movement patterns of a coral reef predator

NASA Astrophysics Data System (ADS)

Heupel, M. R.; Simpfendorfer, C. A.

2015-06-01

Long-term monitoring is required to fully define periodicity and patterns in animal movement. This is particularly relevant for defining what factors are driving the presence, location, and movements of individuals. The long-term movement and space use patterns of grey reef sharks, Carcharhinus amblyrhynchos, were examined on a whole of reef scale in the southern Great Barrier Reef to define whether movement and activity space varied through time. Twenty-nine C. amblyrhynchos were tracked for over 2 years to define movement patterns. All individuals showed high residency within the study site, but also had high roaming indices. This indicated that individuals remained in the region and used all of the monitored habitat (i.e., the entire reef perimeter). Use of space was consistent through time with high reuse of areas most of the year. Therefore, individuals maintained discrete home ranges, but undertook broader movements around the reef at times. Mature males showed greatest variation in movement with larger activity spaces and movement into new regions during the mating season (August-September). Depth use patterns also differed, suggesting behaviour or resource requirements varied between sexes. Examination of the long-term, reef-scale movements of C. amblyrhynchos has revealed that reproductive activity may play a key role in space use and activity patterns. It was unclear whether mating behaviour or an increased need for food to sustain reproductive activity and development played a greater role in these patterns. Reef shark movement patterns are becoming more clearly defined, but research is still required to fully understand the biological drivers for the observed patterns.

Evidence for protection of targeted reef fish on the largest marine reserve in the Caribbean

PubMed Central

Pina-Amargós, Fabián; González-Sansón, Gaspar; Martín-Blanco, Félix

2014-01-01

Marine reserves can restore fish abundance and diversity in areas impacted by overfishing, but the effectiveness of reserves in developing countries where resources for enforcement are limited, have seldom been evaluated. Here we assess whether the establishment in 1996 of the largest marine reserve in the Caribbean, Gardens of the Queen in Cuba, has had a positive effect on the abundance of commercially valuable reef fish species in relation to neighboring unprotected areas. We surveyed 25 sites, including two reef habitats (reef crest and reef slope), inside and outside the marine reserve, on five different months, and over a one-and-a-half year period. Densities of the ten most frequent, highly targeted, and relatively large fish species showed a significant variability across the archipelago for both reef habitats that depended on the month of survey. These ten species showed a tendency towards higher abundance inside the reserve in both reef habitats for most months during the study. Average fish densities pooled by protection level, however, showed that five out of these ten species were at least two-fold significantly higher inside than outside the reserve at one or both reef habitats. Supporting evidence from previously published studies in the area indicates that habitat complexity and major benthic communities were similar inside and outside the reserve, while fishing pressure appeared to be homogeneous across the archipelago before reserve establishment. Although poaching may occur within the reserve, especially at the boundaries, effective protection from fishing was the most plausible explanation for the patterns observed. PMID:24688853

Last interglacial sea levels and regional tectonics from fossil coral reefs at the Gulf of Aqaba

NASA Astrophysics Data System (ADS)

Bar, N.; Agnon, A.; Yehudai, M.; Lazar, B.; Shaked, Y.; Stein, M.

2017-12-01

Elevated fossil reef terraces along the northeast coast of the Gulf of Aqaba (GOA) illuminate the history of tectonic uplift and sea-level changes during the last interglacial period. The terraces comprise fringing reefs, some with clear reef structure that includes a reef flat and a shallow back lagoon accurately marking sea-levels. U-Th ages of precipitation of aragonitic corals and recrystallization of aragonite to calcite corals from three terraces are used to constrain the local sea-level pattern. Terrace R3 was probably formed during an earlier stage of MIS5e at 130-132 ka and recrystallized to calcite at 124±8 ka. Terrace R2, comprising a wide and developed reef flat, formed during a stable sea level of MIS5e at 129-121 ka and recrystallized to calcite at 104±6 ka. Terrace R1 formed during a short still-stand at 117 ka. All terraces formed when sea level was a few meters above the modern GOA level. The recrystallization age of Terrace R2 implies that at around 104±6 ka (MIS5c) sea level was close to its MIS5e elevation. The tectonic setting is superimposed by local faulting that caused small vertical displacements within the terraces. The elevation and ages of the reef flats indicate a slow average uplift, 0.12±0.05 m/kyr, similar to rates inferred for other reef terraces along GOA and the Red Sea. This implies an overall long-term slow tectonic uplift of the Arabian lithosphere during the late Quaternary.

Novel reef fabrics from the Devonian Canning Basin, Western Australia

NASA Astrophysics Data System (ADS)

Wood, Rachel

1998-11-01

Large cement-filled cavities (0.2 to 1.5 m wide) are well developed in slope-margin sediments of the spectacular Upper Devonian (Frasnian) reefs of the Canning Basin, Western Australia, where they account for up to 50% of the primary porosity. These are here interpreted as primary reef framework cavities that formed beneath a variety of domal, tabular or laminar stromatoporoid sponges. Of particular note are those created by unusual, very thin (2 to 8 mm), laminar stromatoporoids (mainly Stachyodes australe), that formed arching, hollow domes up to 0.3 m in height and 1.5 m in diameter over the sediment surface to enclose flat-based cavities. The free undersurface of these stromatoporoids often supported a hitherto unrecognised cryptic community, dominated by pendent growth of the putative calcified cyanobacterium Renalcis, with rare intergrown lithistid sponges and spiny atrypid brachiopods. The uneven growth surface of the cryptos imparts an irregular, stromatactis-like texture to the upper surface of the remaining cavity, which is filled by early marine, finely banded, fibrous cements (mainly radiaxial calcite) interbedded with often multiple generations of geopetal sediment containing peloids and ostracod debris. This ecology yields the tabular stromatoporoid- Renalcis fabric described ubiquitously from the Canning Basin reef complex. Such unusual reef fabrics are a consequence of the ecology of shallow marine mid-Palaeozoic reefs which were quite unlike that of modern coral reefs. The frequent preservation of relatively delicate, in situ communities was due to (1) rapid and pervasive early cementation, (2) growth under non-energetic conditions, and (3) the relative insignificance of bioeroders associated with reefs at this time.

Evidence for protection of targeted reef fish on the largest marine reserve in the Caribbean.

PubMed

Pina-Amargós, Fabián; González-Sansón, Gaspar; Martín-Blanco, Félix; Valdivia, Abel

2014-01-01

Marine reserves can restore fish abundance and diversity in areas impacted by overfishing, but the effectiveness of reserves in developing countries where resources for enforcement are limited, have seldom been evaluated. Here we assess whether the establishment in 1996 of the largest marine reserve in the Caribbean, Gardens of the Queen in Cuba, has had a positive effect on the abundance of commercially valuable reef fish species in relation to neighboring unprotected areas. We surveyed 25 sites, including two reef habitats (reef crest and reef slope), inside and outside the marine reserve, on five different months, and over a one-and-a-half year period. Densities of the ten most frequent, highly targeted, and relatively large fish species showed a significant variability across the archipelago for both reef habitats that depended on the month of survey. These ten species showed a tendency towards higher abundance inside the reserve in both reef habitats for most months during the study. Average fish densities pooled by protection level, however, showed that five out of these ten species were at least two-fold significantly higher inside than outside the reserve at one or both reef habitats. Supporting evidence from previously published studies in the area indicates that habitat complexity and major benthic communities were similar inside and outside the reserve, while fishing pressure appeared to be homogeneous across the archipelago before reserve establishment. Although poaching may occur within the reserve, especially at the boundaries, effective protection from fishing was the most plausible explanation for the patterns observed.

A new record of the late Pleistocene coral Pocillopora palmata from the Dry Tortugas, Florida reef tract, USA

USGS Publications Warehouse

Toth, Lauren T.; Kuffner, Ilsa B.; Cheng, Hai; Edwards, R. Lawrence

2015-01-01

Pocilloporid corals dominated shallow-water environments in the Caribbean during much of the Cenozoic; however, the regional diversity of this family declined over the last 15 My, culminating with the extinction of its final member, Pocillopora palmata, during the latest Pleistocene. Here we present a new record of P. palmata from Dry Tortugas National Park in the Florida Keys and infer its likely age. Although most existing records of P. palmata are from the sub-aerial reef deposits of MIS5e (∼ 125 ka), the presently submerged reef in the Dry Tortugas was too deep (> 18 m) during this period to support significant reef growth. In contrast, the maximum water depth during MIS5a (∼ 82 ka) was only ∼ 5.6 m, which would have been ideal for P. palmata. Diagenetic alteration prevented direct dating of the samples; however, the similarity between the depths of the Pleistocene bedrock in the Dry Tortugas and other reefs in the Florida Keys, which have been previously dated to MIS5a, support the conclusion that P. palmata likely grew in the Dry Tortugas during this period. Our study provides important new information on the history of P. palmata, but it also highlights the vital need for more comprehensive studies of the Quaternary history of Caribbean reef development. With modern reef degradation already driving yet another restructuring of Caribbean coral assemblages, insights from past extinctions may prove critical in determining the prognosis of Caribbean reefs in the future.

RNA-Seq of the Caribbean reef-building coral Orbicella faveolata (Scleractinia-Merulinidae) under bleaching and disease stress expands models of coral innate immunity.

PubMed

Anderson, David A; Walz, Marcus E; Weil, Ernesto; Tonellato, Peter; Smith, Matthew C

2016-01-01

Climate change-driven coral disease outbreaks have led to widespread declines in coral populations. Early work on coral genomics established that corals have a complex innate immune system, and whole-transcriptome gene expression studies have revealed mechanisms by which the coral immune system responds to stress and disease. The present investigation expands bioinformatic data available to study coral molecular physiology through the assembly and annotation of a reference transcriptome of the Caribbean reef-building coral, Orbicella faveolata. Samples were collected during a warm water thermal anomaly, coral bleaching event and Caribbean yellow band disease outbreak in 2010 in Puerto Rico. Multiplex sequencing of RNA on the Illumina GAIIx platform and de novo transcriptome assembly by Trinity produced 70,745,177 raw short-sequence reads and 32,463 O. faveolata transcripts, respectively. The reference transcriptome was annotated with gene ontologies, mapped to KEGG pathways, and a predicted proteome of 20,488 sequences was generated. Protein families and signaling pathways that are essential in the regulation of innate immunity across Phyla were investigated in-depth. Results were used to develop models of evolutionarily conserved Wnt, Notch, Rig-like receptor, Nod-like receptor, and Dicer signaling. O. faveolata is a coral species that has been studied widely under climate-driven stress and disease, and the present investigation provides new data on the genes that putatively regulate its immune system.

RNA-Seq of the Caribbean reef-building coral Orbicella faveolata (Scleractinia-Merulinidae) under bleaching and disease stress expands models of coral innate immunity

PubMed Central

Walz, Marcus E.; Weil, Ernesto; Smith, Matthew C.

2016-01-01

Climate change-driven coral disease outbreaks have led to widespread declines in coral populations. Early work on coral genomics established that corals have a complex innate immune system, and whole-transcriptome gene expression studies have revealed mechanisms by which the coral immune system responds to stress and disease. The present investigation expands bioinformatic data available to study coral molecular physiology through the assembly and annotation of a reference transcriptome of the Caribbean reef-building coral, Orbicella faveolata. Samples were collected during a warm water thermal anomaly, coral bleaching event and Caribbean yellow band disease outbreak in 2010 in Puerto Rico. Multiplex sequencing of RNA on the Illumina GAIIx platform and de novo transcriptome assembly by Trinity produced 70,745,177 raw short-sequence reads and 32,463 O. faveolata transcripts, respectively. The reference transcriptome was annotated with gene ontologies, mapped to KEGG pathways, and a predicted proteome of 20,488 sequences was generated. Protein families and signaling pathways that are essential in the regulation of innate immunity across Phyla were investigated in-depth. Results were used to develop models of evolutionarily conserved Wnt, Notch, Rig-like receptor, Nod-like receptor, and Dicer signaling. O. faveolata is a coral species that has been studied widely under climate-driven stress and disease, and the present investigation provides new data on the genes that putatively regulate its immune system. PMID:26925311

Linking removal targets to the ecological effects of invaders: a predictive model and field test.

PubMed

Green, Stephanie J; Dulvy, Nicholas K; Brooks, Annabelle M L; Akins, John L; Cooper, Andrew B; Miller, Skylar; Côté, Isabelle M

Species invasions have a range of negative effects on recipient ecosystems, and many occur at a scale and magnitude that preclude complete eradication. When complete extirpation is unlikely with available management resources, an effective strategy may be to suppress invasive populations below levels predicted to cause undesirable ecological change. We illustrated this approach by developing and testing targets for the control of invasive Indo-Pacific lionfish (Pterois volitans and P. miles) on Western Atlantic coral reefs. We first developed a size-structured simulation model of predation by lionfish on native fish communities, which we used to predict threshold densities of lionfish beyond which native fish biomass should decline. We then tested our predictions by experimentally manipulating lionfish densities above or below reef-specific thresholds, and monitoring the consequences for native fish populations on 24 Bahamian patch reefs over 18 months. We found that reducing lionfish below predicted threshold densities effectively protected native fish community biomass from predation-induced declines. Reductions in density of 25–92%, depending on the reef, were required to suppress lionfish below levels predicted to overconsume prey. On reefs where lionfish were kept below threshold densities, native prey fish biomass increased by 50–70%. Gains in small (<6 cm) size classes of native fishes translated into lagged increases in larger size classes over time. The biomass of larger individuals (>15 cm total length), including ecologically important grazers and economically important fisheries species, had increased by 10–65% by the end of the experiment. Crucially, similar gains in prey fish biomass were realized on reefs subjected to partial and full removal of lionfish, but partial removals took 30% less time to implement. By contrast, the biomass of small native fishes declined by >50% on all reefs with lionfish densities exceeding reef-specific thresholds. Large inter-reef variation in the biomass of prey fishes at the outset of the study, which influences the threshold density of lionfish, means that we could not identify a single rule of thumb for guiding control efforts. However, our model provides a method for setting reef-specific targets for population control using local monitoring data. Our work is the first to demonstrate that for ongoing invasions, suppressing invaders below densities that cause environmental harm can have a similar effect, in terms of protecting the native ecosystem on a local scale, to achieving complete eradication.

Impact of mussel bioengineering on fine-grained sediment dynamics in a coastal lagoon: A numerical modelling investigation

NASA Astrophysics Data System (ADS)

Forsberg, Pernille L.; Lumborg, Ulrik; Bundgaard, Klavs; Ernstsen, Verner B.

2017-12-01

Rødsand lagoon in southeast Denmark is a non-tidal coastal lagoon. It is home to a wide range of marine flora and fauna and part of the Natura 2000 network. An increase in turbidity through elevated levels of suspended sediment concentration (SSC) within the lagoon may affect the ecosystem health due to reduced light penetration. Increasing SSC levels within Rødsand lagoon could be caused by increasing storm intensity or by a sediment spill from dredging activities west of the lagoon in relation to the planned construction of the Fehmarnbelt fixed link between Denmark and Germany. The aim of the study was to investigate the impact of a mussel reef on sediment import and SSC in a semi-enclosed lagoon through the development of a bioengineering modelling application that makes it possible to include the filtrating effect of mussels in a numerical model of the lagoonal system. The numerical implementation of an exterior mussel reef generated a reduction in the SSC in the vicinity of the reef, through the adjacent inlet and in the western part of the lagoon. The mussel reef reduced the sediment import to Rødsand lagoon by 13-22% and reduced the SSC within Rødsand lagoon by 5-9% depending on the filtration rate and the reef length. The results suggest that the implementation of a mussel reef has the potential to relieve the pressure of increasing turbidity levels within a semi-enclosed lagoonal system. However, further assessment and development of the bioengineering application and resulting ecosystem impacts are necessary prior to actual implementation.

Experimental analysis of the effects of consumer exclusion on recruitment and succession of a coral reef system along a water quality gradient in the Spermonde Archipelago, Indonesia

NASA Astrophysics Data System (ADS)

Plass-Johnson, Jeremiah G.; Heiden, Jasmin P.; Abu, Nur; Lukman, Muhammad; Teichberg, Mirta

2016-03-01

The composition of coral reef benthic communities is strongly affected by variation in water quality and consumer abundance and composition. This is particularly evident in highly populated coastal regions where humans depend on coral reef resources and where terrestrial run-off can change the chemical composition of the water. We tested the effects of grazing pressure and ambient water conditions along an established eutrophication gradient on the recruitment and successional development of benthic communities of the Spermonde Archipelago, Indonesia, through caging experiments with settlement tiles. Within 1 month, benthic community composition of the closest reef to land, near the city of Makassar, was significantly different from other sites further offshore, driven primarily by differences in recruitment of invertebrates or turf algae. In contrast to other caging experiments, consumer exclusion had no effect after 3 months, suggesting that larger, mobile consumers had little effect on the benthic communities of these reefs at all sites. Despite conditions that usually favour macroalgal development, this group was rarely observed on recruitment tiles even after 4 months of consumer exclusion. Furthermore, tiles from both the caged and open treatments retained high proportions of open space indicating the possible role of small-sized or non-fish consumers that were not excluded from the experiment. These results indicate that, unlike many other studies, benthic consumers in the Spermonde Archipelago had little effect on the recruitment and early succession of the reef habitat and that unexamined biota such as mesograzers may be significant in degraded systems.

Climate-Smart Design for Ecosystem Management: A Test Application for Coral Reefs.

PubMed

West, Jordan M; Courtney, Catherine A; Hamilton, Anna T; Parker, Britt A; Julius, Susan H; Hoffman, Jennie; Koltes, Karen H; MacGowan, Petra

2017-01-01

The interactive and cumulative impacts of climate change on natural resources such as coral reefs present numerous challenges for conservation planning and management. Climate change adaptation is complex due to climate-stressor interactions across multiple spatial and temporal scales. This leaves decision makers worldwide faced with local, regional, and global-scale threats to ecosystem processes and services, occurring over time frames that require both near-term and long-term planning. Thus there is a need for structured approaches to adaptation planning that integrate existing methods for vulnerability assessment with design and evaluation of effective adaptation responses. The Corals and Climate Adaptation Planning project of the U.S. Coral Reef Task Force seeks to develop guidance for improving coral reef management through tailored application of a climate-smart approach. This approach is based on principles from a recently-published guide which provides a framework for adopting forward-looking goals, based on assessing vulnerabilities to climate change and applying a structured process to design effective adaptation strategies. Work presented in this paper includes: (1) examination of the climate-smart management cycle as it relates to coral reefs; (2) a compilation of adaptation strategies for coral reefs drawn from a comprehensive review of the literature; (3) in-depth demonstration of climate-smart design for place-based crafting of robust adaptation actions; and (4) feedback from stakeholders on the perceived usefulness of the approach. We conclude with a discussion of lessons-learned on integrating climate-smart design into real-world management planning processes and a call from stakeholders for an "adaptation design tool" that is now under development.

Management strategies for coral reefs and people under global environmental change: 25 years of scientific research.

PubMed

Comte, Adrien; Pendleton, Linwood H

2018-03-01

Coral reef ecosystems and the people who depend on them are increasingly exposed to the adverse effects of global environmental change (GEC), including increases in sea-surface temperature and ocean acidification. Managers and decision-makers need a better understanding of the options available for action in the face of these changes. We refine a typology of actions developed by Gattuso et al. (2015) that could serve in prioritizing strategies to deal with the impacts of GEC on reefs and people. Using the typology we refined, we investigate the scientific effort devoted to four types of management strategies: mitigate, protect, repair, adapt that we tie to the components of the chain of impact they affect: ecological vulnerability or social vulnerability. A systematic literature review is used to investigate quantitatively how scientific effort over the past 25 years is responding to the challenge posed by GEC on coral reefs and to identify gaps in research. A growing literature has focused on these impacts and on management strategies to sustain coral reef social-ecological systems. We identify 767 peer reviewed articles published between 1990 and 2016 that address coral reef management in the context of GEC. The rate of publication of such studies has increased over the years, following the general trend in climate research. The literature focuses on protect strategies the most, followed by mitigate and adapt strategies, and finally repair strategies. Developed countries, particularly Australia and the United States, are over-represented as authors and locations of case studies across all types of management strategies. Authors affiliated in developed countries play a major role in investigating case studies across the globe. The majority of articles focus on only one of the four categories of actions. A gap analysis reveals three directions for future research: (1) more research is needed in South-East Asia and other developing countries where the impacts of GEC on coral reefs will be the greatest, (2) more scholarly effort should be devoted to understanding how adapt and repair strategies can deal with the impacts of GEC, and (3) the simultaneous assessment of multiple strategies is needed to understand trade-offs and synergies between actions. Copyright © 2018 Elsevier Ltd. All rights reserved.

Strong trans-Pacific break and local conservation units in the Galapagos shark (Carcharhinus galapagensis) revealed by genome-wide cytonuclear markers.

PubMed

Pazmiño, Diana A; Maes, Gregory E; Green, Madeline E; Simpfendorfer, Colin A; Hoyos-Padilla, E Mauricio; Duffy, Clinton J A; Meyer, Carl G; Kerwath, Sven E; Salinas-de-León, Pelayo; van Herwerden, Lynne

2018-05-01

The application of genome-wide cytonuclear molecular data to identify management and adaptive units at various spatio-temporal levels is particularly important for overharvested large predatory organisms, often characterized by smaller, localized populations. Despite being "near threatened", current understanding of habitat use and population structure of Carcharhinus galapagensis is limited to specific areas within its distribution. We evaluated population structure and connectivity across the Pacific Ocean using genome-wide single-nucleotide polymorphisms (~7200 SNPs) and mitochondrial control region sequences (945 bp) for 229 individuals. Neutral SNPs defined at least two genetically discrete geographic groups: an East Tropical Pacific (Mexico, east and west Galapagos Islands), and another central-west Pacific (Lord Howe Island, Middleton Reef, Norfolk Island, Elizabeth Reef, Kermadec, Hawaii and Southern Africa). More fine-grade population structure was suggested using outlier SNPs: west Pacific, Hawaii, Mexico, and Galapagos. Consistently, mtDNA pairwise Φ ST defined three regional stocks: east, central and west Pacific. Compared to neutral SNPs (F ST  = 0.023-0.035), mtDNA exhibited more divergence (Φ ST  = 0.258-0.539) and high overall genetic diversity (h = 0.794 ± 0.014; π = 0.004 ± 0.000), consistent with the longstanding eastern Pacific barrier between the east and central-west Pacific. Hawaiian and Southern African populations group within the west Pacific cluster. Effective population sizes were moderate/high for east/west populations (738 and 3421, respectively). Insights into the biology, connectivity, genetic diversity, and population demographics informs for improved conservation of this species, by delineating three to four conservation units across their Pacific distribution. Implementing such conservation management may be challenging, but is necessary to achieve long-term population resilience at basin and regional scales.

Community structure and coral status across reef fishing intensity gradients in Palk Bay reef, southeast coast of India.

PubMed

Manikandan, B; Ravindran, J; Shrinivaasu, S; Marimuthu, N; Paramasivam, K

2014-10-01

Coral reef fishes are exploited without the knowledge of their sustainability and their possible effect in altering the community structure of a coral reef ecosystem. Alteration of the community structure could cause a decline in the health of coral reefs and its services. We documented the coral community structure, status of live corals and reef fish assemblages in Palk Bay at the reef fishing hotspots and its nearby reef area with minimum fishing pressure and compared it with a control reef area where reef fishing was banned for more than two decades. The comparison was based on the percent cover of different forms of live corals, their diversity and the density and diversity of reef fishes. The reef fish stock in the reef fishing hotspots and its neighbouring reef was lower by 61 and 38%, respectively compared to the control reef. The herbivore fish Scarus ghobban and Siganus javus were exploited at a rate of 250 and 105 kg month(-1) fishermen(-1), respectively, relatively high comparing the small reef area. Live and dead corals colonized by turf algae were predominant in both the reef fishing hotspots and its nearby coral ecosystems. The percent cover of healthy live corals and live corals colonized by turf algae was <10 and >80%, respectively, in the intensively fished coral ecosystems. The corals were less diverse and the massive Porites and Favia colonies were abundant in the intensive reef fishing sites. Results of this study suggest that the impact of reef fish exploitation was not solely restricted to the intensively fished reefs, but also to the nearby reefs which play a critical role in the resilience of degraded reef ecosystems.

A continuous genome assembly of the corkwing wrasse (Symphodus melops).

PubMed

Mattingsdal, Morten; Jentoft, Sissel; Tørresen, Ole K; Knutsen, Halvor; Hansen, Michael M; Robalo, Joana I; Zagrodzka, Zuzanna; André, Carl; Gonzalez, Enrique Blanco

2018-04-14

The wrasses (Labridae) are one of the most successful and species-rich families of the Perciformes order of teleost fish. Its members display great morphological diversity, and occupy distinct trophic levels in coastal waters and coral reefs. The cleaning behaviour displayed by some wrasses, such as corkwing wrasse (Symphodus melops), is of particular interest for the salmon aquaculture industry to combat and control sea lice infestation as an alternative to chemicals and pharmaceuticals. There are still few genome assemblies available within this fish family for comparative and functional studies, despite the rapid increase in genome resources generated during the past years. Here, we present a highly continuous genome assembly of the corkwing wrasse using PacBio SMRT sequencing (x28.8) followed by error correction with paired-end Illumina data (x132.9). The present genome assembly consists of 5040 contigs (N50 = 461,652 bp) and a total size of 614 Mbp, of which 8.5% of the genome sequence encode known repeated elements. The genome assembly covers 94.21% of highly conserved genes across ray-finned fish species. We find evidence for increased copy numbers specific for corkwing wrasse possibly highlighting diversification and adaptive processes in gene families including N-linked glycosylation (ST8SIA6) and stress response kinases (HIPK1). By comparative analyses, we discover that de novo repeats, often not properly investigated during genome annotation, encode hundreds of immune-related genes. This new genomic resource, together with the ballan wrasse (Labrus bergylta), will allow for in-depth comparative genomics as well as population genetic analyses for the understudied wrasses. Copyright © 2018 Elsevier Inc. All rights reserved.

Great Barrier Reef, Queensland, Australia

NASA Technical Reports Server (NTRS)

1990-01-01

This detailed view of the Great Barrier Reef, Queensland, Australia (19.5S, 149.5E) shows several small patch reefs within the overall reef system. The Great Barrier Reef, largest in the world, comprises thousands of individual reefs of great variety and are closely monitored by marine ecologists. These reefs are about 6000 years old and sit on top of much older reefs. The most rapid coral growth occurs on the landward side of the reefs.

Using Knowledge of Chemical and Structural Defenses of Seaweeds to Develop a Standardized Measure of Herbivory in Tropical and Subtropical Habitats

NASA Astrophysics Data System (ADS)

Paul, V. J.

2016-02-01

Herbivory is an important process determining the structure and function of marine ecosystems, and this is especially true on coral reefs and in associated tropical and subtropical habitats where grazing by fishes can be intense. As reef degradation is occurring on a global scale, and overfishing can contribute to this problem, rates of herbivory can be an important indicator of reef function and resilience. Our goal was to develop a standardized herbivory assay that can be deployed globally to measure the impact of herbivorous fishes across multiple habitat types. Many tropical and subtropical seaweeds contain chemical and structural defenses that can protect them from herbivores, and this information was key to selecting a range of marine plants that are differentially palatable to herbivorous fishes for these assays. We present method development and experimental results from extensive deployment of these herbivory assays at Carrie Bow Cay, Belize.

Oyster reef restoration in controlling coastal pollution around India: A viewpoint.

PubMed

Chakraborty, Parthasarathi

2017-02-15

Coastal waters receive large amounts of nutrients and pollutants from different point and nonpoint sources through bays and estuaries. Excess supply of nutrients in coastal waters may have detrimental effects, leading to hypoxia and anoxia from eutrophication. Reduction in concentrations of excess nutrients/pollutants in bays/estuarine system is must for healthy coastal ecosystem functioning. Conservations of bays, estuaries and coastal zones are must for sustainable development in any maritime country. Excellent ability of oyster in removing and controlling the concentrations of nutrients, pollutants, suspended particulate matters from bays and estuarine waters stimulated me to provide a viewpoint on oyster reef restoration in controlling nutrient/heavy metals fluxes and marine coastal pollution around India. Oyster reefs restoration may decrease nutrient and heavy metals fluxes in coastal waters and reduce the intensity of oxygen depletion in the coastal Arabian Sea (seasonal) and Bay of Bengal. However, extensive research is recommended to understand the impact of oyster reef restoration in controlling coastal pollution which is essential for sustainable development around India. Copyright © 2016 Elsevier Ltd. All rights reserved.

A Global Estimate of the Number of Coral Reef Fishers.

PubMed

Teh, Louise S L; Teh, Lydia C L; Sumaila, U Rashid

2013-01-01

Overfishing threatens coral reefs worldwide, yet there is no reliable estimate on the number of reef fishers globally. We address this data gap by quantifying the number of reef fishers on a global scale, using two approaches - the first estimates reef fishers as a proportion of the total number of marine fishers in a country, based on the ratio of reef-related to total marine fish landed values. The second estimates reef fishers as a function of coral reef area, rural coastal population, and fishing pressure. In total, we find that there are 6 million reef fishers in 99 reef countries and territories worldwide, of which at least 25% are reef gleaners. Our estimates are an improvement over most existing fisher population statistics, which tend to omit accounting for gleaners and reef fishers. Our results suggest that slightly over a quarter of the world's small-scale fishers fish on coral reefs, and half of all coral reef fishers are in Southeast Asia. Coral reefs evidently support the socio-economic well-being of numerous coastal communities. By quantifying the number of people who are employed as reef fishers, we provide decision-makers with an important input into planning for sustainable coral reef fisheries at the appropriate scale.

A Global Estimate of the Number of Coral Reef Fishers

PubMed Central

Teh, Louise S. L.; Teh, Lydia C. L.; Sumaila, U. Rashid

2013-01-01

Overfishing threatens coral reefs worldwide, yet there is no reliable estimate on the number of reef fishers globally. We address this data gap by quantifying the number of reef fishers on a global scale, using two approaches - the first estimates reef fishers as a proportion of the total number of marine fishers in a country, based on the ratio of reef-related to total marine fish landed values. The second estimates reef fishers as a function of coral reef area, rural coastal population, and fishing pressure. In total, we find that there are 6 million reef fishers in 99 reef countries and territories worldwide, of which at least 25% are reef gleaners. Our estimates are an improvement over most existing fisher population statistics, which tend to omit accounting for gleaners and reef fishers. Our results suggest that slightly over a quarter of the world’s small-scale fishers fish on coral reefs, and half of all coral reef fishers are in Southeast Asia. Coral reefs evidently support the socio-economic well-being of numerous coastal communities. By quantifying the number of people who are employed as reef fishers, we provide decision-makers with an important input into planning for sustainable coral reef fisheries at the appropriate scale. PMID:23840327

St. Petersburg Coastal and Marine Science Center coral reef research

USGS Publications Warehouse

Poore, Richard Z.; Kuffner, Ilsa B.; Kellogg, Christina A.

2010-01-01

The U.S. Geological Survey (USGS) Coral Reef Ecosystem STudies (CREST) Project specifically addresses priorities identified in the 'Facing tomorrow's challenges' U.S. Geological Survey science in the decade 2007-2017' document (USGS, 2007). Research includes a blend of historical, monitoring, and process studies aimed at improving our understanding of the development, current status and function, as well as likely future changes in coral ecosystems. Topics such as habitat characterization and distribution, coral disease, and trends in biogenic calcification are major focus areas. We seek to increase the understanding of reef structure, ecological integrity, and responses to global change.

Tropical fishes dominate temperate reef fish communities within western Japan.

PubMed

Nakamura, Yohei; Feary, David A; Kanda, Masaru; Yamaoka, Kosaku

2013-01-01

Climate change is resulting in rapid poleward shifts in the geographical distribution of tropical and subtropical fish species. We can expect that such range shifts are likely to be limited by species-specific resource requirements, with temperate rocky reefs potentially lacking a range of settlement substrates or specific dietary components important in structuring the settlement and success of tropical and subtropical fish species. We examined the importance of resource use in structuring the distribution patterns of range shifting tropical and subtropical fishes, comparing this with resident temperate fish species within western Japan (Tosa Bay); the abundance, diversity, size class, functional structure and latitudinal range of reef fishes utilizing both coral reef and adjacent rocky reef habitat were quantified over a 2 year period (2008-2010). This region has undergone rapid poleward expansion of reef-building corals in response to increasing coastal water temperatures, and forms one of the global hotspots for rapid coastal changes. Despite the temperate latitude surveyed (33°N, 133°E) the fish assemblage was both numerically, and in terms of richness, dominated by tropical fishes. Such tropical faunal dominance was apparent within both coral, and rocky reef habitats. The size structure of the assemblage suggested that a relatively large number of tropical species are overwintering within both coral and rocky habitats, with a subset of these species being potentially reproductively active. The relatively high abundance and richness of tropical species with obligate associations with live coral resources (i.e., obligate corallivores) shows that this region holds the most well developed temperate-located tropical fish fauna globally. We argue that future tropicalisation of the fish fauna in western Japan, associated with increasing coral habitat development and reported increasing shifts in coastal water temperatures, may have considerable positive economic impacts to the local tourism industry and bring qualitative changes to both local and regional fisheries resources.

Tropical Fishes Dominate Temperate Reef Fish Communities within Western Japan

PubMed Central

Nakamura, Yohei; Feary, David A.; Kanda, Masaru; Yamaoka, Kosaku

2013-01-01

Climate change is resulting in rapid poleward shifts in the geographical distribution of tropical and subtropical fish species. We can expect that such range shifts are likely to be limited by species-specific resource requirements, with temperate rocky reefs potentially lacking a range of settlement substrates or specific dietary components important in structuring the settlement and success of tropical and subtropical fish species. We examined the importance of resource use in structuring the distribution patterns of range shifting tropical and subtropical fishes, comparing this with resident temperate fish species within western Japan (Tosa Bay); the abundance, diversity, size class, functional structure and latitudinal range of reef fishes utilizing both coral reef and adjacent rocky reef habitat were quantified over a 2 year period (2008–2010). This region has undergone rapid poleward expansion of reef-building corals in response to increasing coastal water temperatures, and forms one of the global hotspots for rapid coastal changes. Despite the temperate latitude surveyed (33°N, 133°E) the fish assemblage was both numerically, and in terms of richness, dominated by tropical fishes. Such tropical faunal dominance was apparent within both coral, and rocky reef habitats. The size structure of the assemblage suggested that a relatively large number of tropical species are overwintering within both coral and rocky habitats, with a subset of these species being potentially reproductively active. The relatively high abundance and richness of tropical species with obligate associations with live coral resources (i.e., obligate corallivores) shows that this region holds the most well developed temperate-located tropical fish fauna globally. We argue that future tropicalisation of the fish fauna in western Japan, associated with increasing coral habitat development and reported increasing shifts in coastal water temperatures, may have considerable positive economic impacts to the local tourism industry and bring qualitative changes to both local and regional fisheries resources. PMID:24312528

Epigenome-associated phenotypic acclimatization to ocean acidification in a reef-building coral.

PubMed

Liew, Yi Jin; Zoccola, Didier; Li, Yong; Tambutté, Eric; Venn, Alexander A; Michell, Craig T; Cui, Guoxin; Deutekom, Eva S; Kaandorp, Jaap A; Voolstra, Christian R; Forêt, Sylvain; Allemand, Denis; Tambutté, Sylvie; Aranda, Manuel

2018-06-01

There are increasing concerns that the current rate of climate change might outpace the ability of reef-building corals to adapt to future conditions. Work on model systems has shown that environmentally induced alterations in DNA methylation can lead to phenotypic acclimatization. While DNA methylation has been reported in corals and is thought to associate with phenotypic plasticity, potential mechanisms linked to changes in whole-genome methylation have yet to be elucidated. We show that DNA methylation significantly reduces spurious transcription in the coral Stylophora pistillata . Furthermore, we find that DNA methylation also reduces transcriptional noise by fine-tuning the expression of highly expressed genes. Analysis of DNA methylation patterns of corals subjected to long-term pH stress showed widespread changes in pathways regulating cell cycle and body size. Correspondingly, we found significant increases in cell and polyp sizes that resulted in more porous skeletons, supporting the hypothesis that linear extension rates are maintained under conditions of reduced calcification. These findings suggest an epigenetic component in phenotypic acclimatization that provides corals with an additional mechanism to cope with environmental change.

Controls on coral-ground development along the northern Mesoamerican Reef tract.

PubMed

Rodríguez-Martínez, Rosa E; Jordán-Garza, Adán G; Maldonado, Miguel A; Blanchon, Paul

2011-01-01

Coral-grounds are reef communities that colonize rocky substratum but do not form framework or three-dimensional reef structures. To investigate why, we used video transects and underwater photography to determine the composition, structure and status of a coral-ground community located on the edge of a rocky terrace in front of a tourist park, Xcaret, in the northern Mesoamerican Reef tract, Mexico. The community has a relatively low coral, gorgonian and sponge cover (<10%) and high algal cover (>40%). We recorded 23 species of Scleractinia, 14 species of Gorgonacea and 30 species of Porifera. The coral community is diverse but lacks large coral colonies, being dominated instead by small, sediment-tolerant, and brooding species. In these small colonies, the abundance of potentially lethal interactions and partial mortality is high but decreases when colonies are larger than 40 cm. Such characteristics are consistent with an environment control whereby storm waves periodically remove larger colonies and elevate sediment flux. The community only survives these storm conditions due to its slope-break location, which ensures lack of burial and continued local recruitment. A comparison with similar coral-ground communities in adjacent areas suggests that the narrow width of the rock terrace hinders sediment stabilization, thereby ensuring that communities cannot escape bottom effects and develop into three-dimensional reef structures on geological time scales.

Trip report: pilot studies of factors linking watershed function and coastal ecosystem health in American Samoa

USGS Publications Warehouse

Atkinson, Carter T.; Medeiros, Arthur C.

2010-01-01

Coral reef resources in the territory of American Samoa face significant problems from overfishing, non-point source pollution, global warming, and continuing population growth and development. The islands are still relatively isolated relative to other parts of the Pacific and have managed to avoid some of the more devastating invasive species that have reached other archipelagoes. As a result, there are opportunities for collaborative and integrative research and monitoring programs to help restore and maintain biodiversity and functioning natural ecosystem in the archipelago. We found that the 'Ridge to Reef' paradigm already exists in American Samoa, with a high degree of interagency cooperation and efficient use of limited resources already taking place in the Territory. USGS may be able to make contributions as a partner organization in the Coral Reef Advisory Group (CRAG) through deployment of sediment monitoring instrumentation to supplement stream monitoring by the American Samoa Environmental Protection Agency, by providing high resolution vegetation and land-use maps of main islands, by providing additional support to the American Samoa Department of Marine and Wildlife Resources and the National Park Service for monitoring of invasive species, by working with members of CRAG to initiate sediment transport studies on Samoan reefs, and by developing new projects on the effects of bacterial contamination and pollutants on coral reef physiology and demography.

Consequences of a government-controlled agricultural price increase on fishing and the coral reef ecosystem in the republic of kiribati.

PubMed

Reddy, Sheila M W; Groves, Theodore; Nagavarapu, Sriniketh

2014-01-01

Economic development policies may have important economic and ecological consequences beyond the sector they target. Understanding these consequences is important to improving these policies and finding opportunities to align economic development with natural resource conservation. These issues are of particular interest to governments and non-governmental organizations that have new mandates to pursue multiple benefits. In this case study, we examined the direct and indirect economic and ecological effects of an increase in the government-controlled price for the primary agricultural product in the Republic of Kiribati, Central Pacific. We conducted household surveys and underwater visual surveys of the coral reef to examine how the government increase in the price of copra directly affected copra labor and indirectly affected fishing and the coral reef ecosystem. The islands of Kiribati are coral reef atolls and the majority of households participate in copra agriculture and fishing on the coral reefs. Our household survey data suggest that the 30% increase in the price of copra resulted in a 32% increase in copra labor and a 38% increase in fishing labor. Households with the largest amount of land in coconut production increased copra labor the most and households with the smallest amount of land in coconut production increased fishing the most. Our ecological data suggests that increased fishing labor may result in a 20% decrease in fish stocks and 4% decrease in coral reef-builders. We provide empirical evidence to suggest that the government increase in the copra price in Kiribati had unexpected and indirect economic and ecological consequences. In this case, the economic development policy was not in alignment with conservation. These results emphasize the importance of accounting for differences in household capital and taking a systems approach to policy design and evaluation, as advocated by sustainable livelihood and ecosystem-based management frameworks.

Consequences of a Government-Controlled Agricultural Price Increase on Fishing and the Coral Reef Ecosystem in the Republic of Kiribati

PubMed Central

Reddy, Sheila M. W.; Groves, Theodore; Nagavarapu, Sriniketh

2014-01-01

Background Economic development policies may have important economic and ecological consequences beyond the sector they target. Understanding these consequences is important to improving these policies and finding opportunities to align economic development with natural resource conservation. These issues are of particular interest to governments and non-governmental organizations that have new mandates to pursue multiple benefits. In this case study, we examined the direct and indirect economic and ecological effects of an increase in the government-controlled price for the primary agricultural product in the Republic of Kiribati, Central Pacific. Methods/Principal Findings We conducted household surveys and underwater visual surveys of the coral reef to examine how the government increase in the price of copra directly affected copra labor and indirectly affected fishing and the coral reef ecosystem. The islands of Kiribati are coral reef atolls and the majority of households participate in copra agriculture and fishing on the coral reefs. Our household survey data suggest that the 30% increase in the price of copra resulted in a 32% increase in copra labor and a 38% increase in fishing labor. Households with the largest amount of land in coconut production increased copra labor the most and households with the smallest amount of land in coconut production increased fishing the most. Our ecological data suggests that increased fishing labor may result in a 20% decrease in fish stocks and 4% decrease in coral reef-builders. Conclusions/Significance We provide empirical evidence to suggest that the government increase in the copra price in Kiribati had unexpected and indirect economic and ecological consequences. In this case, the economic development policy was not in alignment with conservation. These results emphasize the importance of accounting for differences in household capital and taking a systems approach to policy design and evaluation, as advocated by sustainable livelihood and ecosystem-based management frameworks. PMID:24820734

Predatory fish depletion and recovery potential on Caribbean reefs

PubMed Central

Valdivia, Abel; Cox, Courtney Ellen; Bruno, John Francis

2017-01-01

The natural, prehuman abundance of most large predators is unknown because of the lack of historical data and a limited understanding of the natural factors that control their populations. Determining the supportable predator biomass at a given location (that is, the predator carrying capacity) would help managers to optimize protection and would provide site-specific recovery goals. We assess the relationship between predatory reef fish biomass and several anthropogenic and environmental variables at 39 reefs across the Caribbean to (i) estimate their roles determining local predator biomass and (ii) determine site-specific recovery potential if fishing was eliminated. We show that predatory reef fish biomass tends to be higher in marine reserves but is strongly negatively related to human activities, especially coastal development. However, human activities and natural factors, including reef complexity and prey abundance, explain more than 50% of the spatial variation in predator biomass. Comparing site-specific predator carrying capacities to field observations, we infer that current predatory reef fish biomass is 60 to 90% lower than the potential supportable biomass in most sites, even within most marine reserves. We also found that the scope for recovery varies among reefs by at least an order of magnitude. This suggests that we could underestimate unfished biomass at sites that provide ideal conditions for predators or greatly overestimate that of seemingly predator-depleted sites that may have never supported large predator populations because of suboptimal environmental conditions. PMID:28275730

Reef Sound as an Orientation Cue for Shoreward Migration by Pueruli of the Rock Lobster, Jasus edwardsii

PubMed Central

Green, Bridget S.; Gardner, Caleb; Hesse, Jan; Stanley, Jenni A.

2016-01-01

The post-larval or puerulus stage of spiny, or rock, lobsters (Palinuridae) swim many kilometres from open oceans into coastal waters where they subsequently settle. The orientation cues used by the puerulus for this migration are unclear, but are presumed to be critical to finding a place to settle. Understanding this process may help explain the biological processes of dispersal and settlement, and be useful for developing realistic dispersal models. In this study, we examined the use of reef sound as an orientation cue by the puerulus stage of the southern rock lobster, Jasus edwardsii. Experiments were conducted using in situ binary choice chambers together with replayed recording of underwater reef sound. The experiment was conducted in a sandy lagoon under varying wind conditions. A significant proportion of puerulus (69%) swam towards the reef sound in calm wind conditions. However, in windy conditions (>25 m s-1) the orientation behaviour appeared to be less consistent with the inclusion of these results, reducing the overall proportion of pueruli that swam towards the reef sound (59.3%). These results resolve previous speculation that underwater reef sound is used as an orientation cue in the shoreward migration of the puerulus of spiny lobsters, and suggest that sea surface winds may moderate the ability of migrating pueruli to use this cue to locate coastal reef habitat to settle. Underwater sound may increase the chance of successful settlement and survival of this valuable species. PMID:27310676

Reef Sound as an Orientation Cue for Shoreward Migration by Pueruli of the Rock Lobster, Jasus edwardsii.

PubMed

Hinojosa, Ivan A; Green, Bridget S; Gardner, Caleb; Hesse, Jan; Stanley, Jenni A; Jeffs, Andrew G

2016-01-01

The post-larval or puerulus stage of spiny, or rock, lobsters (Palinuridae) swim many kilometres from open oceans into coastal waters where they subsequently settle. The orientation cues used by the puerulus for this migration are unclear, but are presumed to be critical to finding a place to settle. Understanding this process may help explain the biological processes of dispersal and settlement, and be useful for developing realistic dispersal models. In this study, we examined the use of reef sound as an orientation cue by the puerulus stage of the southern rock lobster, Jasus edwardsii. Experiments were conducted using in situ binary choice chambers together with replayed recording of underwater reef sound. The experiment was conducted in a sandy lagoon under varying wind conditions. A significant proportion of puerulus (69%) swam towards the reef sound in calm wind conditions. However, in windy conditions (>25 m s-1) the orientation behaviour appeared to be less consistent with the inclusion of these results, reducing the overall proportion of pueruli that swam towards the reef sound (59.3%). These results resolve previous speculation that underwater reef sound is used as an orientation cue in the shoreward migration of the puerulus of spiny lobsters, and suggest that sea surface winds may moderate the ability of migrating pueruli to use this cue to locate coastal reef habitat to settle. Underwater sound may increase the chance of successful settlement and survival of this valuable species.

Future coral reef habitat marginality: Temporal and spatial effects of climate change in the Pacific basin

USGS Publications Warehouse

Guinotte, J.M.; Buddemeier, R.W.; Kleypas, J.A.

2003-01-01

Marginal reef habitats are regarded as regions where coral reefs and coral communities reflect the effects of steady-state or long-term average environmental limitations. We used classifications based on this concept with predicted time-variant conditions of future climate to develop a scenario for the evolution of future marginality. Model results based on a conservative scenario of atmospheric CO2 increase were used to examine changes in sea surface temperature and aragonite saturation state over the Pacific Ocean basin until 2069. Results of the projections indicated that essentially all reef locations are likely to become marginal with respect to aragonite saturation state. Significant areas, including some with the highest biodiversity, are expected to experience high-temperature regimes that may be marginal, and additional areas will enter the borderline high temperature range that have experienced significant ENSO-related bleaching in the recent past. The positive effects of warming in areas that are presently marginal in terms of low temperature were limited. Conditions of the late 21st century do not lie outside the ranges in which present-day marginal reef systems occur. Adaptive and acclimative capabilities of organisms and communities will be critical in determining the future of coral reef ecosystems.

Hyperspectral remote sensing of wild oyster reefs

NASA Astrophysics Data System (ADS)

Le Bris, Anthony; Rosa, Philippe; Lerouxel, Astrid; Cognie, Bruno; Gernez, Pierre; Launeau, Patrick; Robin, Marc; Barillé, Laurent

2016-04-01

The invasion of the wild oyster Crassostrea gigas along the western European Atlantic coast has generated changes in the structure and functioning of intertidal ecosystems. Considered as an invasive species and a trophic competitor of the cultivated conspecific oyster, it is now seen as a resource by oyster farmers following recurrent mass summer mortalities of oyster spat since 2008. Spatial distribution maps of wild oyster reefs are required by local authorities to help define management strategies. In this work, visible-near infrared (VNIR) hyperspectral and multispectral remote sensing was investigated to map two contrasted intertidal reef structures: clusters of vertical oysters building three-dimensional dense reefs in muddy areas and oysters growing horizontally creating large flat reefs in rocky areas. A spectral library, collected in situ for various conditions with an ASD spectroradiometer, was used to run Spectral Angle Mapper classifications on airborne data obtained with an HySpex sensor (160 spectral bands) and SPOT satellite HRG multispectral data (3 spectral bands). With HySpex spectral/spatial resolution, horizontal oysters in the rocky area were correctly classified but the detection was less efficient for vertical oysters in muddy areas. Poor results were obtained with the multispectral image and from spatially or spectrally degraded HySpex data, it was clear that the spectral resolution was more important than the spatial resolution. In fact, there was a systematic mud deposition on shells of vertical oyster reefs explaining the misclassification of 30% of pixels recognized as mud or microphytobenthos. Spatial distribution maps of oyster reefs were coupled with in situ biomass measurements to illustrate the interest of a remote sensing product to provide stock estimations of wild oyster reefs to be exploited by oyster producers. This work highlights the interest of developing remote sensing techniques for aquaculture applications in coastal areas.

Genomic signatures of geographic isolation and natural selection in coral reef fishes.

PubMed

Gaither, Michelle R; Bernal, Moisés A; Coleman, Richard R; Bowen, Brian W; Jones, Shelley A; Simison, W Brian; Rocha, Luiz A

2015-04-01

The drivers of speciation remain among the most controversial topics in evolutionary biology. Initially, Darwin emphasized natural selection as a primary mechanism of speciation, but the architects of the modern synthesis largely abandoned that view in favour of divergence by geographic isolation. The balance between selection and isolation is still at the forefront of the evolutionary debate, especially for the world's tropical oceans where biodiversity is high, but isolating barriers are few. Here, we identify the drivers of speciation in Pacific reef fishes of the genus Acanthurus by comparative genome scans of two peripheral populations that split from a large Central-West Pacific lineage at roughly the same time. Mitochondrial sequences indicate that populations in the Hawaiian Archipelago and the Marquesas Islands became isolated approximately 0.5 Ma. The Hawaiian lineage is morphologically indistinguishable from the widespread Pacific form, but the Marquesan form is recognized as a distinct species that occupies an unusual tropical ecosystem characterized by upwelling, turbidity, temperature fluctuations, algal blooms and little coral cover. An analysis of 3737 SNPs reveals a strong signal of selection at the Marquesas, with 59 loci under disruptive selection including an opsin Rh2 locus. While both the Hawaiian and Marquesan populations indicate signals of drift, the former shows a weak signal of selection that is comparable with populations in the Central-West Pacific. This contrast between closely related lineages reveals one population diverging due primarily to geographic isolation and genetic drift, and the other achieving taxonomic species status under the influence of selection. © 2015 The Authors. Molecular Ecology Published by John Wiley & Sons Ltd.

Image Fusion Applied to Satellite Imagery for the Improved Mapping and Monitoring of Coral Reefs: a Proposal

NASA Astrophysics Data System (ADS)

Gholoum, M.; Bruce, D.; Hazeam, S. Al

2012-07-01

A coral reef ecosystem, one of the most complex marine environmental systems on the planet, is defined as biologically diverse and immense. It plays an important role in maintaining a vast biological diversity for future generations and functions as an essential spawning, nursery, breeding and feeding ground for many kinds of marine species. In addition, coral reef ecosystems provide valuable benefits such as fisheries, ecological goods and services and recreational activities to many communities. However, this valuable resource is highly threatened by a number of environmental changes and anthropogenic impacts that can lead to reduced coral growth and production, mass coral mortality and loss of coral diversity. With the growth of these threats on coral reef ecosystems, there is a strong management need for mapping and monitoring of coral reef ecosystems. Remote sensing technology can be a valuable tool for mapping and monitoring of these ecosystems. However, the diversity and complexity of coral reef ecosystems, the resolution capabilities of satellite sensors and the low reflectivity of shallow water increases the difficulties to identify and classify its features. This paper reviews the methods used in mapping and monitoring coral reef ecosystems. In addition, this paper proposes improved methods for mapping and monitoring coral reef ecosystems based on image fusion techniques. This image fusion techniques will be applied to satellite images exhibiting high spatial and low to medium spectral resolution with images exhibiting low spatial and high spectral resolution. Furthermore, a new method will be developed to fuse hyperspectral imagery with multispectral imagery. The fused image will have a large number of spectral bands and it will have all pairs of corresponding spatial objects. This will potentially help to accurately classify the image data. Accuracy assessment use ground truth will be performed for the selected methods to determine the quality of the information derived from image classification. The research will be applied to the Kuwait's southern coral reefs: Kubbar and Um Al-Maradim.

Human activities as a driver of spatial variation in the trophic structure of fish communities on Pacific coral reefs.

PubMed

Ruppert, Jonathan L W; Vigliola, Laurent; Kulbicki, Michel; Labrosse, Pierre; Fortin, Marie-Josée; Meekan, Mark G

2018-01-01

Anthropogenic activities such as land-use change, pollution and fishing impact the trophic structure of coral reef fishes, which can influence ecosystem health and function. Although these impacts may be ubiquitous, they are not consistent across the tropical Pacific Ocean. Using an extensive database of fish biomass sampled using underwater visual transects on coral reefs, we modelled the impact of human activities on food webs at Pacific-wide and regional (1,000s-10,000s km) scales. We found significantly lower biomass of sharks and carnivores, where there were higher densities of human populations (hereafter referred to as human activity); however, these patterns were not spatially consistent as there were significant differences in the trophic structures of fishes among biogeographic regions. Additionally, we found significant changes in the benthic structure of reef environments, notably a decline in coral cover where there was more human activity. Direct human impacts were the strongest in the upper part of the food web, where we found that in a majority of the Pacific, the biomass of reef sharks and carnivores were significantly and negatively associated with human activity. Finally, although human-induced stressors varied in strength and significance throughout the coral reef food web across the Pacific, socioeconomic variables explained more variation in reef fish trophic structure than habitat variables in a majority of the biogeographic regions. Notably, economic development (measured as GDP per capita) did not guarantee healthy reef ecosystems (high coral cover and greater fish biomass). Our results indicate that human activities are significantly shaping patterns of trophic structure of reef fishes in a spatially nonuniform manner across the Pacific Ocean, by altering processes that organize communities in both "top-down" (fishing of predators) and "bottom-up" (degradation of benthic communities) contexts. © 2017 John Wiley & Sons Ltd.

Clues to Coral Reef Ecosystem Health: Spectral Analysis Coupled with Radiative Transfer Modeling

NASA Astrophysics Data System (ADS)

Guild, L.; Ganapol, B.; Kramer, P.; Armstrong, R.; Gleason, A.; Torres, J.; Johnson, L.; Garfield, N.

2003-12-01

Coral reefs are among the world's most productive and biologically rich ecosystems and are some of the oldest ecosystems on Earth. Coralline structures protect coastlines from storms, maintain high diversity of marine life, and provide nurseries for marine species. Coral reefs play a role in carbon cycling through high rates of organic carbon metabolism and calcification. Coral reefs provide fisheries habitat that are the sole protein source for humans on remote islands. Reefs respond immediately to environmental change and therefore are considered "canaries" of the oceans. However, the world's reefs are in peril: they have shrunk 10-50% from their historical extent due to climate change and anthropogenic activity. An important contribution to coral reef research is improved spectral distinction of reef species' health where anthropogenic activity and climate change impacts are high. Relatively little is known concerning the spectral properties of coral or how coral structures reflect and transmit light. New insights into optical processes of corals under stressed conditions can lead to improved interpretation of airborne and satellite data and forecasting of immediate or long-term impacts of events such as bleaching and disease in coral. We are investigating the spatial and spectral resolution required to detect remotely changes in reef health by coupling spectral analysis of in situ spectra and airborne spectral data with a new radiative transfer model called CorMOD2. Challenges include light attenuation by the water column, atmospheric scattering, and scattering caused by the coral themselves that confound the spectral signal. In CorMOD2, input coral reflectance measurements produce modeled absorption through an inversion at each visible wavelength. The first model development phase of CorMOD2 imposes a scattering baseline that is constant regardless of coral condition, and further specifies that coral is optically thick. Evolution of CorMOD2 is towards a coral-specific radiative transfer model that includes coral biochemical concentrations, specific absorptivities of coral components, and transmission measurements from coral surfaces.

Small-Boat Noise Impacts Natural Settlement Behavior of Coral Reef Fish Larvae.

PubMed

Simpson, Stephen D; Radford, Andrew N; Holles, Sophie; Ferarri, Maud C O; Chivers, Douglas P; McCormick, Mark I; Meekan, Mark G

2016-01-01

After a pelagic larval phase, settlement-stage coral reef fish must locate a suitable reef habitat for juvenile life. Reef noise, produced by resident fish and invertebrates, provides an important cue for orientation and habitat selection during this process, which must often occur in environments impacted by anthropogenic noise. We adapted an established field-based protocol to test whether recorded boat noise influenced the settlement behavior of reef fish. Fewer fish settled to patch reefs broadcasting boat + reef noise compared with reef noise alone. This study suggests that boat noise, now a common feature of many reefs, can compromise critical settlement behavior of reef fishes.

Preliminary assessment of bioengineered fringing shoreline reefs in Grand Isle and Breton Sound, Louisiana

USGS Publications Warehouse

La Peyre, Megan K.; Schwarting, Lindsay; Miller, Shea

2013-01-01

Restoration of three-dimensional shell habitats in coastal Louisiana presents a valuable and potentially self-sustaining approach to providing shoreline protection and critical nekton habitat and may contribute to water quality maintenance. The use of what has been called “living shorelines” is particularly promising because in addition to the hypothesized shoreline protection services, it is predicted that, if built and located in viable sites, these living shorelines may ultimately contribute to water quality maintenance through filtration of bivalves and may enhance nekton habitat. This approach, however, has not been tested extensively in different shallow water estuarine settings; understanding under what conditions a living shoreline must have to support a sustainable oyster population, and where these reefs may provide valuable shoreline protection, is key to ensuring that this approach provides an effective tool for coastal restoration. This project gathered preliminary data on the sustainability and shoreline stabilization of three large bioengineered fringing reefs located in Grand Isle, Lake Eloi, and Lake Fortuna, Louisiana. We collected preconstruction and postconstruction physiochemical and biological data by using a before-after-control-impact approach to evaluate the effectiveness of these living shoreline structures on reducing marsh erosion, enabling reef sustainability, and providing other ecosystem benefits. Although this project was originally designed to compare reef performance and impacts across three different locations over 2 years, delays in construction because of the Deepwater Horizon oil spill resulted in reefs being built from 12 to 18 months later than anticipated. As a result, monitoring postconstruction was severely limited. One reef, Grand Isle, was completed in March 2011 and monitored up to 18 months postcreation, whereas Lake Eloi and Lake Fortuna reefs were not completed until January 2012, and only 8 months of postconstruction data are available. Data for the latter two sites thus reflect only the 2012 spring/summer seasons, which were further impacted by a direct hit by Hurricane Isaac in August 2012, which resulted in shoreward movement of approximately 14 percent of the bioengineered structures at Lake Fortuna. Given the shortened monitoring timeframe and significant differences in construction schedules, we were not able to provide a full postconstruction assessment of the sites or a full comparison of site success based on local site characteristics. Because many of the impacts that were identified for monitoring reflect long-term processes, results and data presented should be interpreted cautiously. Sustainable oyster reefs require recruitment, growth, and survival at a rate that keeps pace with mortality and shell disarticulation. Although one site failed to recruit (establishment plus survival > 50 millimeters [mm]) over two spawning seasons, two sites only had 6 months postconstruction data available for assessment. Although there are good data on the requirements for oyster growth, there is limited explicit information on the site-specific water quality, hydrodynamic, and biological interaction effects that may determine successful reef establishment. Furthermore, interannual variability can significantly affect reef establishment, and our shortened timeframe of sampling (less than one spawning season for two of the reefs; two spawning seasons for one reef), combined with a lack of prerestoration monitoring data, limit our ability to draw any conclusions about long-term reef sustainability. Bioengineered reefs are thought to provide some benefits to shoreline stabilization through their structure by immediately attenuating wave energies and directly reducing erosion rates at shorelines sheltered by the reefs but also by increasing sediment deposition behind the reefs. Preliminary data indicate differences in reef impact by site; given the short timeframe of postconstruction data at two of the sites, and differences in reef placement between sites, however, it is difficult to draw any conclusions. Longer-term data collection and further analyses comparing reef placement; local wind, wave energy, sediment transport processes; and local bathymetry may help in parameterizing sites where fringing reefs may be most beneficial for shoreline protection. In addition to basic reef sustainability and shoreline stabilization, we measured both water quality parameters and nekton abundances around the newly created reefs and adjacent reference sites. Within the timeframe of monitoring, no effect of reefs on water quality was detected at any site. Given that water quality effects are hypothesized to result from the filtration activities of bivalves, and reefs either failed to recruit (settlement plus survival to > 50 mm) or successfully recruited but only had a couple months of growth prior to this report, it was not expected that an effect would be detectable in this timeframe. Nekton such as blue crab, gulf menhaden, and anchovies were found to be more abundant on the reefs; larger, more transient species were not found to be affected by reef presence. Future work examining smaller organisms and juveniles, including more explicit studies examining why and how these organisms preferentially use oyster reefs, would be useful in the design of other bioengineered reefs and help in understanding the role of the reefs in supporting the nekton community. It is clear from the initial work that ensuring correct site selection by better understanding what local site factors influence oyster populations is key to establishing successful living shoreline reefs. Ultimately, the success of the reefs in providing any ecosystem service relies on their ability to build a viable oyster population that is self-sustaining over the long term. As many of the ecosystem processes hypothesized to result from reefs develop over the long term (4–6 years), some level of monitoring over the next few years is highly recommended in order to accurately assess the long term viability of the reefs, their provision of ecosystem services, and to provide better guidance for future projects.

[A review of the role and function of microbes in coral reef ecosystem].

PubMed

Zhou, Jin; Jin, Hui; Cai, Zhong-Hua

2014-03-01

Coral reef is consisted with several kinds of reef-associated organisms, including coral, fish, benthos, algae and microbes, which is an important marine ecosystem. Coral reef lives in the oligotrophic environment, has very highly primary productivity and net productivity, and is called "tropical rain forest in ocean". In corals, diverse microorganisms exert a significant influence on biogeochemical and ecological processes, including food webs, organism life cycles, and nutrient cycling. With the development of molecular biology, the role of microorganisms in a coral system is becoming more outstanding. In this article, we reviewed current understanding on 1) the onset of coral-bacterial associations; 2) the characteristics of microbes in coral (specificity, plasticity and co-evolution) ; 3) the role and signal regulation of microbes in the health and disease of coral; and 4) the response mechanism of microbes for global climatic change and consequent effects, such as temperature rise, ocean acidification and eutrophication. The aims of this article were to summarize the latest theories and achievements, clear the mechanism of microbial ecology in coral reefs and provide a theoretical reference for better protection and maintaining the coral's biodiversity.

Florida Integrated Science Center (FISC) Coral Reef Research

USGS Publications Warehouse

Poore, D.Z.

2008-01-01

Coral reefs provide important ecosystem services such as shoreline protection and the support of lucrative industries including fisheries and tourism. Such ecosystem services are being compromised as reefs decline due to coral disease, climate change, overfishing, and pollution. There is a need for focused, integrated science to understand the complex ecological interactions and effects of these many stressors and to provide information that will effectively guide policies and best management practices to preserve and restore these important resources. The U.S. Geological Survey Florida Integrated Science Center (USGS-FISC) is conducting a coordinated Coral Reef Research Project beginning in 2009. Specific research topics are aimed at addressing priorities identified in the 'Strategic Science for Coral Ecosystems 2007-2011' document (U.S. Geological Survey, 2007). Planned research will include a blend of historical, monitoring, and process studies aimed at improving our understanding of the development, current status and function, and likely future changes in coral ecosystems. Topics such as habitat characterization and distribution, coral disease, and trends in biogenic calcification are major themes of understanding reef structure, ecological integrity, and responses to global change.

Ecologically based targets for bioavailable (reactive) nitrogen discharge from the drainage basins of the Wet Tropics region, Great Barrier Reef.

PubMed

Wooldridge, Scott A; Brodie, Jon E; Kroon, Frederieke J; Turner, Ryan D R

2015-08-15

A modelling framework is developed for the Wet Tropics region of the Great Barrier Reef that links a quantitative river discharge parameter (viz. dissolved inorganic nitrogen concentration, DIN) with an eutrophication indicator within the marine environment (viz. chlorophyll-a concentration, chl-a). The model predicts catchment-specific levels of reduction (%) in end-of-river DIN concentrations (as a proxy for total potentially reactive nitrogen, PRN) needed to ensure compliance with chl-a 'trigger' guidelines for the ecologically distinct, but PRN-related issues of crown-of-thorns starfish (COTS) outbreaks, reef biodiversity loss, and thermal bleaching sensitivity. The results indicate that even for river basins dominated by agricultural land uses, quite modest reductions in end-of-river PRN concentrations (∼20-40%) may assist in mitigating the risk of primary COTS outbreaks from the mid-shelf reefs of the Wet Tropics. However, more significant reductions (∼60-80%) are required to halt and reverse declines in reef biodiversity, and loss of thermal bleaching resistance. Copyright © 2015 Elsevier Ltd. All rights reserved.

NeMO-Net & Fluid Lensing: The Neural Multi-Modal Observation & Training Network for Global Coral Reef Assessment Using Fluid Lensing Augmentation of NASA EOS Data

NASA Technical Reports Server (NTRS)

Chirayath, Ved

2018-01-01

We present preliminary results from NASA NeMO-Net, the first neural multi-modal observation and training network for global coral reef assessment. NeMO-Net is an open-source deep convolutional neural network (CNN) and interactive active learning training software in development which will assess the present and past dynamics of coral reef ecosystems. NeMO-Net exploits active learning and data fusion of mm-scale remotely sensed 3D images of coral reefs captured using fluid lensing with the NASA FluidCam instrument, presently the highest-resolution remote sensing benthic imaging technology capable of removing ocean wave distortion, as well as hyperspectral airborne remote sensing data from the ongoing NASA CORAL mission and lower-resolution satellite data to determine coral reef ecosystem makeup globally at unprecedented spatial and temporal scales. Aquatic ecosystems, particularly coral reefs, remain quantitatively misrepresented by low-resolution remote sensing as a result of refractive distortion from ocean waves, optical attenuation, and remoteness. Machine learning classification of coral reefs using FluidCam mm-scale 3D data show that present satellite and airborne remote sensing techniques poorly characterize coral reef percent living cover, morphology type, and species breakdown at the mm, cm, and meter scales. Indeed, current global assessments of coral reef cover and morphology classification based on km-scale satellite data alone can suffer from segmentation errors greater than 40%, capable of change detection only on yearly temporal scales and decameter spatial scales, significantly hindering our understanding of patterns and processes in marine biodiversity at a time when these ecosystems are experiencing unprecedented anthropogenic pressures, ocean acidification, and sea surface temperature rise. NeMO-Net leverages our augmented machine learning algorithm that demonstrates data fusion of regional FluidCam (mm, cm-scale) airborne remote sensing with global low-resolution (m, km-scale) airborne and spaceborne imagery to reduce classification errors up to 80% over regional scales. Such technologies can substantially enhance our ability to assess coral reef ecosystems dynamics.

Resilience and climate change: lessons from coral reefs and bleaching in the Western Indian Ocean

NASA Astrophysics Data System (ADS)

Obura, David O.

2005-05-01

The impact of climate change through thermal stress-related coral bleaching on coral reefs of the Western Indian Ocean has been well documented and is caused by rising sea water temperatures associated with background warming trends and extreme climate events. Recent studies have identified a number of factors that may reduce the impact of coral bleaching and mortality at a reef or sub-reef level. However, there is little scientific consensus as yet, and it is unclear how well current science supports the immediate needs of management responses to climate change. This paper provides evidence from the Western Indian Ocean in support of recent hypotheses on coral and reef vulnerability to thermal stress that have been loosely termed 'resistance and resilience to bleaching'. The paper argues for a more explicit definition of terms, and identifies three concepts affecting coral-zooxanthellae holobiont and reef vulnerability to thermal stress previously termed 'resistance to bleaching': 'thermal protection', where some reefs are protected from the thermal conditions that induce bleaching and/or where local physical conditions reduce bleaching and mortality levels; 'thermal resistance', where individual corals bleach to differing degrees to the same thermal stress; and 'thermal tolerance', where individual corals suffer differing levels of mortality when exposed to the same thermal stress. 'Resilience to bleaching' is a special case of ecological resilience, where recovery following large-scale bleaching mortality varies according to ecological and other processes. These concepts apply across multiple levels of biological organization and temporal and spatial scales. Thermal resistance and tolerance are genetic properties and may interact with environmental protection properties resulting in phenotypic variation in bleaching and mortality of corals. The presence or absence of human threats and varying levels of reef management may alter the influence of the above factors, particularly through their impacts on resilience, offering the opportunity for management interventions to mitigate the impacts of thermal stress and recovery on coral reefs. These concepts are compiled within an overarching framework of spatial resilience theory. This provides a framework for developing linked scientific and management questions relating to the larger scale impacts of climate change on coral reefs, their management needs and prospects for their future.

Ocean acidification and calcifying reef organisms: A mesocosm investigation

USGS Publications Warehouse

Jokiel, P.L.; Rodgers, K.S.; Kuffner, I.B.; Andersson, A.J.; Cox, E.F.; MacKenzie, F.T.

2008-01-01

A long-term (10 months) controlled experiment was conducted to test the impact of increased partial pressure of carbon dioxide (pCO2) on common calcifying coral reef organisms. The experiment was conducted in replicate continuous flow coral reef mesocosms flushed with unfiltered sea water from Kaneohe Bay, Oahu, Hawaii. Mesocosms were located in full sunlight and experienced diurnal and seasonal fluctuations in temperature and sea water chemistry characteristic of the adjacent reef flat. Treatment mesocosms were manipulated to simulate an increase in pCO2 to levels expected in this century [midday pCO2 levels exceeding control mesocosms by 365 ?? 130 ??atm (mean ?? sd)]. Acidification had a profound impact on the development and growth of crustose coralline algae (CCA) populations. During the experiment, CCA developed 25% cover in the control mesocosms and only 4% in the acidified mesocosms, representing an 86% relative reduction. Free-living associations of CCA known as rhodoliths living in the control mesocosms grew at a rate of 0.6 g buoyant weight year-1 while those in the acidified experimental treatment decreased in weight at a rate of 0.9 g buoyant weight year-1, representing a 250% difference. CCA play an important role in the growth and stabilization of carbonate reefs, so future changes of this magnitude could greatly impact coral reefs throughout the world. Coral calcification decreased between 15% and 20% under acidified conditions. Linear extension decreased by 14% under acidified conditions in one experiment. Larvae of the coral Pocillopora damicornis were able to recruit under the acidified conditions. In addition, there was no significant difference in production of gametes by the coral Montipora capitata after 6 months of exposure to the treatments. ?? 2008 Springer-Verlag.

Ocean acidification and calcifying reef organisms: a mesocosm investigation

NASA Astrophysics Data System (ADS)

Jokiel, P. L.; Rodgers, K. S.; Kuffner, I. B.; Andersson, A. J.; Cox, E. F.; MacKenzie, F. T.

2008-09-01

A long-term (10 months) controlled experiment was conducted to test the impact of increased partial pressure of carbon dioxide ( pCO2) on common calcifying coral reef organisms. The experiment was conducted in replicate continuous flow coral reef mesocosms flushed with unfiltered sea water from Kaneohe Bay, Oahu, Hawaii. Mesocosms were located in full sunlight and experienced diurnal and seasonal fluctuations in temperature and sea water chemistry characteristic of the adjacent reef flat. Treatment mesocosms were manipulated to simulate an increase in pCO2 to levels expected in this century [midday pCO2 levels exceeding control mesocosms by 365 ± 130 μatm (mean ± sd)]. Acidification had a profound impact on the development and growth of crustose coralline algae (CCA) populations. During the experiment, CCA developed 25% cover in the control mesocosms and only 4% in the acidified mesocosms, representing an 86% relative reduction. Free-living associations of CCA known as rhodoliths living in the control mesocosms grew at a rate of 0.6 g buoyant weight year-1 while those in the acidified experimental treatment decreased in weight at a rate of 0.9 g buoyant weight year-1, representing a 250% difference. CCA play an important role in the growth and stabilization of carbonate reefs, so future changes of this magnitude could greatly impact coral reefs throughout the world. Coral calcification decreased between 15% and 20% under acidified conditions. Linear extension decreased by 14% under acidified conditions in one experiment. Larvae of the coral Pocillopora damicornis were able to recruit under the acidified conditions. In addition, there was no significant difference in production of gametes by the coral Montipora capitata after 6 months of exposure to the treatments.

Conservation status and spatial patterns of AGRRA vitality indices in Southwestern Atlantic reefs.

PubMed

Kikuchi, Ruy K P; Leão, Zelinda M A N; Oliveira, Marília D M

2010-05-01

Coral reefs along the Eastern Brazilian coast extend for a distance of 800 km from 12 degrees to 18 degrees S. They are the largest and the richest reefs of Brazil coasts, and represent the Southernmost coral reefs of the Southwestern Atlantic Ocean. Few reef surveys were performed in the 90's in reef areas of Bahia State, particularly in the Abrolhos reef complex, in the Southernmost side of the state. A monitoring program applying the Atlantic and Gulf Rapid Reef Assessment (AGRRA) protocol was initiated in 2000, in the Abrolhos National Marine Park, after the creation of the South Tropical America (STA) Regional Node of the Global Coral Reef Monitoring Network (GCRMN) by the end of 1999. From that time up to 2005, nine reef surveys were conducted along the coast of the State of Bahia, including 26 reefs, with 95 benthic sites, 280 benthic transects, 2025 quadrats and 3537 stony corals. Eighteen of the 26 investigated reefs were assessed once and eight reefs of Abrolhos were surveyed twice to four times. The MDS ordination, analysis of similarity (ANOSIM, one way and two-way nested layouts) and similarity percentages (SIMPER) tests were applied to investigate the spatial and temporal patterns of reef vitality. Four indicators of the coral vitality: live coral cover, the density of the larger corals (colonics > 20cm per reef site) and of the coral recruits (colonies < 2cm per square meter), and the percentage of macroalgae indicate that the nearshore reefs, which are located less than 5 km from the coast, are in poorer condition than the reefs located more than 5 km off the coast. A higher density of coral colonies, lower macroalgal index, higher relative percent of turf algae and higher density of coral recruits in offshore reefs compared to the nearshore reefs are the conditions that contribute more than 80% to the dissimilarity between them. The offshore reefs are in better vital condition than the nearshore reefs and have a set of vitality indices more closely related to the Northwestern Atlantic reefs than the nearshore reef. These have been most severely impacted by the effects of direct human activities such as cuthrophic waters associated with sewage pollution, higher sedimentation rates and water turbidity, inadequate use of the reefs and over exploitation of their resources. The implementation of a more effective coral reef monitoring program in Bahia is mandatory, in order to improve the strategies for protection and management efforts of the reefs.

Eliciting stakeholder values for coral reef management tasks in the Guánica Bay watershed, Puerto Rico

EPA Science Inventory

The EPA is developing a valuation protocol for southwest Puerto Rico that will support the US Coral Reef Task Force’s (USCRTF) Partnership Initiative in the Guánica Bay/Rio Loco (GB/RL) Watershed. The GB/RL watershed is located in southwestern Puerto Rico and includes the urbaniz...

The genome of Aiptasia, a sea anemone model for coral symbiosis

PubMed Central

Baumgarten, Sebastian; Simakov, Oleg; Esherick, Lisl Y.; Liew, Yi Jin; Lehnert, Erik M.; Michell, Craig T.; Li, Yong; Hambleton, Elizabeth A.; Guse, Annika; Oates, Matt E.; Gough, Julian; Weis, Virginia M.; Aranda, Manuel; Pringle, John R.; Voolstra, Christian R.

2015-01-01

The most diverse marine ecosystems, coral reefs, depend upon a functional symbiosis between a cnidarian animal host (the coral) and intracellular photosynthetic dinoflagellate algae. The molecular and cellular mechanisms underlying this endosymbiosis are not well understood, in part because of the difficulties of experimental work with corals. The small sea anemone Aiptasia provides a tractable laboratory model for investigating these mechanisms. Here we report on the assembly and analysis of the Aiptasia genome, which will provide a foundation for future studies and has revealed several features that may be key to understanding the evolution and function of the endosymbiosis. These features include genomic rearrangements and taxonomically restricted genes that may be functionally related to the symbiosis, aspects of host dependence on alga-derived nutrients, a novel and expanded cnidarian-specific family of putative pattern-recognition receptors that might be involved in the animal–algal interactions, and extensive lineage-specific horizontal gene transfer. Extensive integration of genes of prokaryotic origin, including genes for antimicrobial peptides, presumably reflects an intimate association of the animal–algal pair also with its prokaryotic microbiome. PMID:26324906

Comparative genomics explains the evolutionary success of reef-forming corals.

PubMed

Bhattacharya, Debashish; Agrawal, Shobhit; Aranda, Manuel; Baumgarten, Sebastian; Belcaid, Mahdi; Drake, Jeana L; Erwin, Douglas; Foret, Sylvian; Gates, Ruth D; Gruber, David F; Kamel, Bishoy; Lesser, Michael P; Levy, Oren; Liew, Yi Jin; MacManes, Matthew; Mass, Tali; Medina, Monica; Mehr, Shaadi; Meyer, Eli; Price, Dana C; Putnam, Hollie M; Qiu, Huan; Shinzato, Chuya; Shoguchi, Eiichi; Stokes, Alexander J; Tambutté, Sylvie; Tchernov, Dan; Voolstra, Christian R; Wagner, Nicole; Walker, Charles W; Weber, Andreas Pm; Weis, Virginia; Zelzion, Ehud; Zoccola, Didier; Falkowski, Paul G

2016-05-24

Transcriptome and genome data from twenty stony coral species and a selection of reference bilaterians were studied to elucidate coral evolutionary history. We identified genes that encode the proteins responsible for the precipitation and aggregation of the aragonite skeleton on which the organisms live, and revealed a network of environmental sensors that coordinate responses of the host animals to temperature, light, and pH. Furthermore, we describe a variety of stress-related pathways, including apoptotic pathways that allow the host animals to detoxify reactive oxygen and nitrogen species that are generated by their intracellular photosynthetic symbionts, and determine the fate of corals under environmental stress. Some of these genes arose through horizontal gene transfer and comprise at least 0.2% of the animal gene inventory. Our analysis elucidates the evolutionary strategies that have allowed symbiotic corals to adapt and thrive for hundreds of millions of years.

Physical exploration for uranium during 1951 in the Silver Reef district, Washington County, Utah

USGS Publications Warehouse

Stugard, Frederick

1953-01-01

During 1951 a joint exploration program of the most promising uraniferous areas in the Silver Reef district was made by the U.S. Geological Survey and the u.S. Atomic Energy Commission.  A U.S. Bureau of Mines drill crew, on contract to the Atomic Energy Commission, did 2,450 feet of diamond drilling under the geological supervision of the U.S. Geological Survey.  The purpose of the drilling was to delineate broadly the favorable ground for commercial development of the uranium depostis.  Ten drill holes were located around Pumpkin Point, which is the northeastern end of Buckeye Reef, to probe for extensions of small ore shootsmined on the Point in fine-grained sandstones of the Chinle formation.  Three additional holes were located around teh Tecumseh Hill to prbe for extensions of the small showings of uranium-bearing rocks of Buckeye Reef.

Predator-prey interactions between the corallivorous snail Coralliophila abbreviata and the carnivorous deltoid rock snail Thais deltoidea.

PubMed

Sharp, William C; Delgado, Gabriel A

2015-10-01

Coral reefs in the Florida Keys have become highly degraded in recent decades, prompting efforts to reestablish populations of vital reef-accreting corals to restore reef structure and ecological function. However, predation on these corals by the corallivorous gastropod Coralliophila abbreviata has been a substantial and chronic impediment to these restoration efforts. We conducted laboratory experiments to determine whether Thais deltoidea, a carnivorous gastropod that commonly occurs with C. abbreviata, is a predator of C. abbreviata. We demonstrated that T. deltoidea readily preys upon C. abbreviata and preferentially targets smaller individuals, a foraging behavior that may optimize the energy gained due to reduced handling and consumption times. If this trophic relationship proves ecologically relevant, understanding the predator-prey dynamics between these species could ultimately aid in the development of a comprehensive coral reef restoration strategy for Florida.

Measuring, interpreting, and responding to changes in coral reefs: A challenge for biologists, geologist, and managers

USGS Publications Warehouse

Rogers, Caroline S.; Miller, Jeff; Hubbard, Dennis K.; Rogers, Caroline S.; Lipps, Jere H.; Stanley, George D.

2016-01-01

What, exactly, is a coral reef? And how have the world’s reefs changed in the last several decades? What are the stressors undermining reef structure and function? Given the predicted effects of climate change, do reefs have a future? Is it possible to “manage” coral reefs for resilience? What can coral reef scientists contribute to improve protection and management of coral reefs? What insights can biologists and geologists provide regarding the persistence of coral reefs on a human timescale? What is reef change to a biologist… to a geologist?Clearly, there are many challenging questions. In this chapter, we present some of our thoughts on monitoring and management of coral reefs in US national parks in the Caribbean and western Atlantic based on our experience as members of monitoring teams. We reflect on the need to characterize and evaluate reefs, on how to conduct high-quality monitoring programs, and on what we can learn from biological and geological experiments and investigations. We explore the possibility that specific steps can be taken to “manage” coral reefs for greater resilience.

DNA extraction from coral reef sediment bacteria for the polymerase chain reaction.

PubMed

Guthrie, J N; Moriarty, D J; Blackall, L L

2000-12-15

A rapid and effective method for the direct extraction of high molecular weight amplifiable DNA from two coral reef sediments was developed. DNA was amplified by the polymerase chain reaction (PCR) using 16S rDNA specific primers. The amplicons were digested with HaeIII, HinP1I and MspI and separated using polyacrylamide gel electrophoresis and silver staining. The resulting amplified ribosomal DNA restriction analysis (ARDRA) patterns were used as a fingerprint to discern differences between the coral reef sediment samples. Results indicated that ARDRA is an effective method for determining differences within the bacterial community amongst different environmental samples.

Response of coral reefs to climate change: Expansion and demise of the southernmost Pacific coral reef

NASA Astrophysics Data System (ADS)

Woodroffe, Colin D.; Brooke, Brendan P.; Linklater, Michelle; Kennedy, David M.; Jones, Brian G.; Buchanan, Cameron; Mleczko, Richard; Hua, Quan; Zhao, Jian-xin

2010-08-01

Coral reefs track sea level and are particularly sensitive to changes in climate. Reefs are threatened by global warming, with many experiencing increased coral bleaching. Warmer sea surface temperatures might enable reef expansion into mid latitudes. Here we report multibeam sonar and coring that reveal an extensive relict coral reef around Lord Howe Island, which is fringed by the southernmost reef in the Pacific Ocean. The relict reef, in water depths of 25-50 m, flourished in early Holocene and covered an area more than 20 times larger than the modern reef. Radiocarbon and uranium-series dating indicates that corals grew between 9000 and 7000 years ago. The reef was subsequently drowned, and backstepped to its modern limited extent. This relict reef, with localised re-establishment of corals in the past three millennia, could become a substrate for reef expansion in response to warmer temperatures, anticipated later this century and beyond, if corals are able to recolonise its surface.

Planning and management of the Nido Reef Complex Oil Field development, Philippines

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harry, R.Y.

1981-01-01

As Operator for the Northeast Palawan consortium, Philippines-Cities Service, Inc., commenced the Philippines first commercial offshore oil production from the Nido Reef Complex Oil Field on February 1, 1979, some 11 months after a decision by management to start development. The relative speed at which design, fabrication, and construction were accomplished is attributed to the use of the concepts of project planning, task force approach, and project management. This paper presents the above concepts as applied to the Nido Complex.

Translational environmental biology: cell biology informing conservation.

PubMed

Traylor-Knowles, Nikki; Palumbi, Stephen R

2014-05-01

Typically, findings from cell biology have been beneficial for preventing human disease. However, translational applications from cell biology can also be applied to conservation efforts, such as protecting coral reefs. Recent efforts to understand the cell biological mechanisms maintaining coral health such as innate immunity and acclimatization have prompted new developments in conservation. Similar to biomedicine, we urge that future efforts should focus on better frameworks for biomarker development to protect coral reefs. Copyright © 2014 Elsevier Ltd. All rights reserved.

Finding Nemo: hybrid assembly with Oxford Nanopore and Illumina reads greatly improves the clownfish (Amphiprion ocellaris) genome assembly

PubMed Central

Austin, Christopher M; Hammer, Michael P; Lee, Yin Peng; Gan, Han Ming

2018-01-01

Abstract Background Some of the most widely recognized coral reef fishes are clownfish or anemonefish, members of the family Pomacentridae (subfamily: Amphiprioninae). They are popular aquarium species due to their bright colours, adaptability to captivity, and fascinating behavior. Their breeding biology (sequential hermaphrodites) and symbiotic mutualism with sea anemones have attracted much scientific interest. Moreover, there are some curious geographic-based phenotypes that warrant investigation. Leveraging on the advancement in Nanopore long read technology, we report the first hybrid assembly of the clown anemonefish (Amphiprion ocellaris) genome utilizing Illumina and Nanopore reads, further demonstrating the substantial impact of modest long read sequencing data sets on improving genome assembly statistics. Results We generated 43 Gb of short Illumina reads and 9 Gb of long Nanopore reads, representing approximate genome coverage of 54× and 11×, respectively, based on the range of estimated k-mer-predicted genome sizes of between 791 and 967 Mbp. The final assembled genome is contained in 6404 scaffolds with an accumulated length of 880 Mb (96.3% BUSCO-calculated genome completeness). Compared with the Illumina-only assembly, the hybrid approach generated 94% fewer scaffolds with an 18-fold increase in N50 length (401 kb) and increased the genome completeness by an additional 16%. A total of 27 240 high-quality protein-coding genes were predicted from the clown anemonefish, 26 211 (96%) of which were annotated functionally with information from either sequence homology or protein signature searches. Conclusions We present the first genome of any anemonefish and demonstrate the value of low coverage (∼11×) long Nanopore read sequencing in improving both genome assembly contiguity and completeness. The near-complete assembly of the A. ocellaris genome will be an invaluable molecular resource for supporting a range of genetic, genomic, and phylogenetic studies specifically for clownfish and more generally for other related fish species of the family Pomacentridae. PMID:29342277

Finding Nemo: hybrid assembly with Oxford Nanopore and Illumina reads greatly improves the clownfish (Amphiprion ocellaris) genome assembly.

PubMed

Tan, Mun Hua; Austin, Christopher M; Hammer, Michael P; Lee, Yin Peng; Croft, Laurence J; Gan, Han Ming

2018-03-01

Some of the most widely recognized coral reef fishes are clownfish or anemonefish, members of the family Pomacentridae (subfamily: Amphiprioninae). They are popular aquarium species due to their bright colours, adaptability to captivity, and fascinating behavior. Their breeding biology (sequential hermaphrodites) and symbiotic mutualism with sea anemones have attracted much scientific interest. Moreover, there are some curious geographic-based phenotypes that warrant investigation. Leveraging on the advancement in Nanopore long read technology, we report the first hybrid assembly of the clown anemonefish (Amphiprion ocellaris) genome utilizing Illumina and Nanopore reads, further demonstrating the substantial impact of modest long read sequencing data sets on improving genome assembly statistics. We generated 43 Gb of short Illumina reads and 9 Gb of long Nanopore reads, representing approximate genome coverage of 54× and 11×, respectively, based on the range of estimated k-mer-predicted genome sizes of between 791 and 967 Mbp. The final assembled genome is contained in 6404 scaffolds with an accumulated length of 880 Mb (96.3% BUSCO-calculated genome completeness). Compared with the Illumina-only assembly, the hybrid approach generated 94% fewer scaffolds with an 18-fold increase in N50 length (401 kb) and increased the genome completeness by an additional 16%. A total of 27 240 high-quality protein-coding genes were predicted from the clown anemonefish, 26 211 (96%) of which were annotated functionally with information from either sequence homology or protein signature searches. We present the first genome of any anemonefish and demonstrate the value of low coverage (∼11×) long Nanopore read sequencing in improving both genome assembly contiguity and completeness. The near-complete assembly of the A. ocellaris genome will be an invaluable molecular resource for supporting a range of genetic, genomic, and phylogenetic studies specifically for clownfish and more generally for other related fish species of the family Pomacentridae.

Mesopredator trophodynamics on thermally stressed coral reefs

NASA Astrophysics Data System (ADS)

Hempson, Tessa N.; Graham, Nicholas A. J.; MacNeil, M. Aaron; Hoey, Andrew S.; Almany, Glenn R.

2018-03-01

Ecosystems are becoming vastly modified through disturbance. In coral reef ecosystems, the differential susceptibility of coral taxa to climate-driven bleaching is predicted to shift coral assemblages towards reefs with an increased relative abundance of taxa with high thermal tolerance. Many thermally tolerant coral species are characterised by low structural complexity, with reduced habitat niche space for the small-bodied coral reef fishes on which piscivorous mesopredators feed. This study used a patch reef array to investigate the potential impacts of climate-driven shifts in coral assemblages on the trophodynamics of reef mesopredators and their prey communities. The `tolerant' reef treatment consisted only of coral taxa of low susceptibility to bleaching, while `vulnerable' reefs included species of moderate to high thermal vulnerability. `Vulnerable' reefs had higher structural complexity, and the fish assemblages that established on these reefs over 18 months had higher species diversity, abundance and biomass than those on `tolerant' reefs. Fish assemblages on `tolerant' reefs were also more strongly influenced by the introduction of a mesopredator ( Cephalopholis boenak). Mesopredators on `tolerant' reefs had lower lipid content in their muscle tissue by the end of the 6-week experiment. Such sublethal energetic costs can compromise growth, fecundity, and survivorship, resulting in unexpected population declines in long-lived mesopredators. This study provides valuable insight into the altered trophodynamics of future coral reef ecosystems, highlighting the potentially increased vulnerability of reef fish assemblages to predation as reef structure declines, and the cost of changing prey availability on mesopredator condition.

Reef Education Evaluation: Environmental Knowledge and Reef Experience

ERIC Educational Resources Information Center

Stepath, Carl M.

2005-01-01

Background: The Reef education evaluation: environmental knowledge and reef experience report concerns PhD research about marine education, and the investigation of learning with high school students and the effect of coral reef monitoring marine experiential education interventions. The effectiveness of classroom learning and reef trips were…

Vulnerability of coral reef fisheries to a loss of structural complexity.

PubMed

Rogers, Alice; Blanchard, Julia L; Mumby, Peter J

2014-05-05

Coral reefs face a diverse array of threats, from eutrophication and overfishing to climate change. As live corals are lost and their skeletons eroded, the structural complexity of reefs declines. This may have important consequences for the survival and growth of reef fish because complex habitats mediate predator-prey interactions [1, 2] and influence competition [3-5] through the provision of prey refugia. A positive correlation exists between structural complexity and reef fish abundance and diversity in both temperate and tropical ecosystems [6-10]. However, it is not clear how the diversity of available refugia interacts with individual predator-prey relationships to explain emergent properties at the community scale. Furthermore, we do not yet have the ability to predict how habitat loss might affect the productivity of whole reef communities and the fisheries they support. Using data from an unfished reserve in The Bahamas, we find that structural complexity is associated not only with increased fish biomass and abundance, but also with nonlinearities in the size spectra of fish, implying disproportionately high abundances of certain size classes. By developing a size spectrum food web model that links the vulnerability of prey to predation with the structural complexity of a reef, we show that these nonlinearities can be explained by size-structured prey refugia that reduce mortality rates and alter growth rates in different parts of the size spectrum. Fitting the model with data from a structurally complex habitat, we predict that a loss of complexity could cause more than a 3-fold reduction in fishery productivity. Copyright © 2014 Elsevier Ltd. All rights reserved.

Introduction of geospatial perspective to the ecology of fish-habitat relationships in Indonesian coral reefs: A remote sensing approach

NASA Astrophysics Data System (ADS)

Sawayama, Shuhei; Nurdin, Nurjannah; Akbar AS, Muhammad; Sakamoto, Shingo X.; Komatsu, Teruhisa

2015-06-01

Coral reef ecosystems worldwide are now being harmed by various stresses accompanying the degradation of fish habitats and thus knowledge of fish-habitat relationships is urgently required. Because conventional research methods were not practical for this purpose due to the lack of a geospatial perspective, we attempted to develop a research method integrating visual fish observation with a seabed habitat map and to expand knowledge to a two-dimensional scale. WorldView-2 satellite imagery of Spermonde Archipelago, Indonesia obtained in September 2012 was analyzed and classified into four typical substrates: live coral, dead coral, seagrass and sand. Overall classification accuracy of this map was 81.3% and considered precise enough for subsequent analyses. Three sub-areas (CC: continuous coral reef, BC: boundary of coral reef and FC: few live coral zone) around reef slopes were extracted from the map. Visual transect surveys for several fish species were conducted within each sub-area in June 2013. As a result, Mean density (Ind. / 300 m2) of Chaetodon octofasciatus, known as an obligate feeder of corals, was significantly higher at BC than at the others (p < 0.05), implying that this species' density is strongly influenced by spatial configuration of its habitat, like the "edge effect." This indicates that future conservation procedures for coral reef fishes should consider not only coral cover but also its spatial configuration. The present study also indicates that the introduction of a geospatial perspective derived from remote sensing has great potential to progress conventional ecological studies on coral reef fishes.

Advancing the integration of spatial data to map human and natural drivers on coral reefs

PubMed Central

Gove, Jamison M.; Walecka, Hilary R.; Donovan, Mary K.; Williams, Gareth J.; Jouffray, Jean-Baptiste; Crowder, Larry B.; Erickson, Ashley; Falinski, Kim; Friedlander, Alan M.; Kappel, Carrie V.; Kittinger, John N.; McCoy, Kaylyn; Norström, Albert; Nyström, Magnus; Oleson, Kirsten L. L.; Stamoulis, Kostantinos A.; White, Crow; Selkoe, Kimberly A.

2018-01-01

A major challenge for coral reef conservation and management is understanding how a wide range of interacting human and natural drivers cumulatively impact and shape these ecosystems. Despite the importance of understanding these interactions, a methodological framework to synthesize spatially explicit data of such drivers is lacking. To fill this gap, we established a transferable data synthesis methodology to integrate spatial data on environmental and anthropogenic drivers of coral reefs, and applied this methodology to a case study location–the Main Hawaiian Islands (MHI). Environmental drivers were derived from time series (2002–2013) of climatological ranges and anomalies of remotely sensed sea surface temperature, chlorophyll-a, irradiance, and wave power. Anthropogenic drivers were characterized using empirically derived and modeled datasets of spatial fisheries catch, sedimentation, nutrient input, new development, habitat modification, and invasive species. Within our case study system, resulting driver maps showed high spatial heterogeneity across the MHI, with anthropogenic drivers generally greatest and most widespread on O‘ahu, where 70% of the state’s population resides, while sedimentation and nutrients were dominant in less populated islands. Together, the spatial integration of environmental and anthropogenic driver data described here provides a first-ever synthetic approach to visualize how the drivers of coral reef state vary in space and demonstrates a methodological framework for implementation of this approach in other regions of the world. By quantifying and synthesizing spatial drivers of change on coral reefs, we provide an avenue for further research to understand how drivers determine reef diversity and resilience, which can ultimately inform policies to protect coral reefs. PMID:29494613

Sedimentologic succession of uplifted coral community, Urvina Bay, Isabela Island, Galapagos Archipelago, Ecuador

DOE Office of Scientific and Technical Information (OSTI.GOV)

Colgan, M.W.; Hollander, D.

1987-05-01

In March 1954, along the west-central coast of Isabela Island, an upward movement of magma suddenly raised Urvina Bay over 6 m and exposed several square kilometers of carbonate deposits covering a young aa lava flow (around 1000 years old). Results from 6 transect lines across the uplift, 30 cores, and 10 trenches describe the sedimentologic and ecologic transition from barren basalt to diverse carbonate sediments with small coral reefs. Along horizontal transects spanning from 0 to 7 m paleowater depth, there is a seaward progression from beaches, mangroves, and basalt to thick deposits (> 1.6 m) of carbonate sandsmore » and small coral reefs. Variation in water depth, degree of wave exposure, and irregularity of the aa lava topography provided many microhabitats where coral, calcareous algae, and mollusks settled and grew. Eight hermatypic coral species are found throughout the shelf, and three species (i.e., Pavona clavus, Pocillopora damicornis, and Porites lobata) produced five small, isolated, monospecific, coral-reef frameworks. The vertical section seen in cores and trenches shows that calcium carbonate increased upward, whereas volcanic sediments decreased; however, episodic layers occur with high concentrations of basaltic sands. In vertical samples from the central portion of the shelf, the coral population changed from small, isolated colonies of Psammocora (Plesioseris) superficalis near the basalt basement to large reef-forming colonies of Pocillopora damicornis farther upsection. Reefs of the Galapagos Islands are small and less diverse than most Pacific reefs. Nonetheless, understanding their temporal successional development should throw light on the origin and history of larger oceanic reefs in the Pacific.« less

Echinoid bioerosion and herbivory on Kenyan coral reefs: the role of protection from fishing.

PubMed

Carreiro-Silva, M; McClanahan, T R.

2001-07-30

During feeding, echinoids remove a large proportion of calcium carbonate in addition to the algae growing on dead coral and are consequently of importance in estimating the turnover of organic and inorganic carbon in coral reefs. Rates of herbivory and the erosion of dead coral substratum, referred to as bioerosion, by the most abundant echinoid species in Kenyan reefs, Echinothrix diadema (Linnaeus), Diadema setosum (Leske), D. savignyi (Michelin) and Echinometra mathaei (de Blainville), were compared in three different reef categories with different histories of fishing and its exclusion. These were reefs: (i) protected within Marine National Parks, which exclude all forms of fishing, coral and shell collection for more than 25 years; (ii) one reef within a Marine Park, which has received protection from fishing activities for 8 years (referred to as 'newly protected' reef); and (iii) unprotected reefs, which experience heavy fishing and some coral collection. The aim was to investigate the grazing and bioerosion activity by the above echinoid species in these reef categories. We surveyed sea urchin population densities and determined their rates of bioerosion and herbivory per individual and square meter. Individual rates of bioerosion and herbivory, of the species D. setosum, D. savignyi and E. diadema were estimated from laboratory gut content analysis and gut evacuation experiments in the field, using elevated underwater cages. Individual rates of bioerosion and herbivory of E. mathaei were obtained from a previous field study [J. Exp. Mar. Biol. Ecol. 147 (1991) 121]. Sea urchin bioerosion was greater than herbivory for all studied species and proportional to the body size of the sea urchin species. The large-bodied E. diadema exhibited the highest bioerosion and herbivory rates (5.5+/-0.9 and 2.2+/-0.3 g individual(-1) day(-1), respectively) followed by D. setosum (1.8+/-0.3 and 1.1+/-0.2 g individual(-1) day(-1)) and D. savignyi (0.7+/-0.2 and 0.4+/-0.1 g individual(-1) day(-1)). Highest sea urchin densities were recorded at unprotected reefs (6.2+/-1.5 individual m(-2)), and therefore, bioerosion and herbivory by sea urchins were also highest in this reef category (1180+/-230 g CaCO(3) m(-2) year(-1) and 450+/-77 g algae m(-2) year(-1)). Protected reefs recorded 20 times lower sea urchin bioerosion and herbivory rates (50.3+/-25.8 g CaCO(3) m(-2) year(-1) and 20.7+/-10.4 g algae m(-2) year(-1)), due to the low sea urchin population densities in these reefs (0.06+/-0.01 individual m(-2)). The newly protected reef, with intermediate number of sea urchins (1.2+/-0.1 individual m(-2)), had intermediate rates of sea urchin bioerosion and herbivory (711+/-157 g CaCO(3) m(-2) year(-1) and 299+/-63 g algae m(-2) year(-1)). These findings suggest that echinoids are important in the carbon cycle and reef development, and that fishing can influence these ecological processes.

Encouraging Proximal Relations: Queensland High School Students Go to the Reef

ERIC Educational Resources Information Center

Stepath, Carl; Whitehouse, Hilary

2006-01-01

Background: This article concerns learning with high school students and the effect of snorkeling and coral reef monitoring at the Great Barrier Reef, Australia. The effectiveness of classroom learning, student-reef relationships and reef trips were investigated. Purpose: This paper presents selected student accounts of reef educational…

Effect of Phase Shift from Corals to Zoantharia on Reef Fish Assemblages

PubMed Central

Cruz, Igor C. S.; Loiola, Miguel; Albuquerque, Tiago; Reis, Rodrigo; de Anchieta C. C. Nunes, José; Reimer, James D.; Mizuyama, Masaru; Kikuchi, Ruy K. P.; Creed, Joel C.

2015-01-01

Consequences of reef phase shifts on fish communities remain poorly understood. Studies on the causes, effects and consequences of phase shifts on reef fish communities have only been considered for coral-to-macroalgae shifts. Therefore, there is a large information gap regarding the consequences of novel phase shifts and how these kinds of phase shifts impact on fish assemblages. This study aimed to compare the fish assemblages on reefs under normal conditions (relatively high cover of corals) to those which have shifted to a dominance of the zoantharian Palythoa cf. variabilis on coral reefs in Todos os Santos Bay (TSB), Brazilian eastern coast. We examined eight reefs, where we estimated cover of corals and P. cf. variabilis and coral reef fish richness, abundance and body size. Fish richness differed significantly between normal reefs (48 species) and phase-shift reefs (38 species), a 20% reduction in species. However there was no difference in fish abundance between normal and phase shift reefs. One fish species, Chaetodon striatus, was significantly less abundant on normal reefs. The differences in fish assemblages between different reef phases was due to differences in trophic groups of fish; on normal reefs carnivorous fishes were more abundant, while on phase shift reefs mobile invertivores dominated. PMID:25629532

Holocene reef accretion: southwest Molokai, Hawaii, U.S.A.

USGS Publications Warehouse

Engels, Mary S.; Fletcher, Charles H.; Field, Michael E.; Storlazzi, Curt D.; Grossman, Eric E.; Rooney, John J.B.; Conger, Christopher L.; Glenn, Craig

2004-01-01

Two reef systems off south Molokai, Hale O Lono and Hikauhi (separated by only 10 km), show strong and fundamental differences in modern ecosystem structure and Holocene accretion history that reflect the influence of wave-induced near-bed shear stresses on reef development in Hawaii. Both sites are exposed to similar impacts from south, Kona, and trade-wind swell. However, the Hale O Lono site is exposed to north swell and the Hikuahi site is not. As a result, the reef at Hale O Lono records no late Holocene net accretion while the reef at Hikauhi records consistent and robust accretion over late Holocene time. Analysis and dating of 24 cores from Hale O Lono and Hikauhi reveal the presence of five major lithofacies that reflect paleo-environmental conditions. In order of decreasing depositional energy they are: (1) coral-algal bindstone; (2) mixed skeletal rudstone; (3) massive coral framestone; (4) unconsolidated floatstone; and (5) branching coral framestone-bafflestone. At Hale O Lono, 10 cores document a backstepping reef ranging from ∼ 8,100 cal yr BP (offshore) to ∼ 4,800 cal yr BP (nearshore). A depauperate community of modern coral diminishes shoreward and seaward of ∼ 15 m depth due to wave energy, disrupted recruitment activities, and physical abrasion. Evidence suggests a change from conditions conducive to accretion during the early Holocene to conditions detrimental to accretion in the late Holocene. Reef structure at Hikauhi, reconstructed from 14 cores, reveals a thick, rapidly accreting and young reef (maximum age ∼ 900 cal yr BP). Living coral cover on this reef increases seaward with distance from the reef crest but terminates at a depth of ∼ 20 m where the reef ends in a large sand field. The primary limitation on vertical reef growth is accommodation space under wave base, not recruitment activities or energy conditions. Interpretations of cored lithofacies suggest that modern reef growth on the southwest corner of Molokai, and by extension across Hawaii in general, is controlled by wave-induced near-bed shear stress related to refracted North Pacific swell. Holocene accretion patterns here also reflect the long-term influence of wave-induced near-bed shear stress from north swell during late Holocene time. This finding is consistent with other studies (e.g., Grigg 1998; Cabioch et al. 1999) that reflect the dominance of swell energy and sea level in controlling modern and late Holocene accretion elsewhere in Hawaii and across the Pacific and Indian oceans. Notably, however, this result is refined and clarified for Hawaii in the hypothesis of Rooney et al. (2003) stating that enhancement of the El Niño Southern Oscillation beginning approximately 5000 years ago led to increased north swell energy and signaled the end to net accretion along exposed coastlines in Hawaii. The exposure of Hale O Lono to north swell and the age of sea floor there (ca. 4,800 cal yr BP), coupled with the lack of north swell incidence at Hikauhi and the continuous accretion that has occurred there over the last millennium, strongly supports the ENSO reef hypothesis as outlined by Rooney et al. (2003). Other factors controlling Holocene reef accretion at the study site are relative sea-level position and rate of rise, and wave sheltering by Laau Point. Habitat suitable for reef accretion on the southwest shore of Molokai has shrunk throughout the Holocene.

Coral Reef Protection Implementation Plan

DTIC Science & Technology

2000-10-19

DoD is advancing coral with stinging cells on their tentacles. Thesymbiotic algae ( zooxanthellae ) living in coral reef conservation by developing...symbiotic micro-algae, named natural resources professional to render an opinion, zooxanthellae . based on a minimum of a site visit and current general...both pages. The differing colors are caused by symbiotic zooxanthellae and tissue pigments which vary among individuals: Giant clams are threatened

Artificial Reefs as Surrogate Habitats for Red Snapper in the Northwestern Gulf of Mexico: A Fishery-Independent Comparison of Artificial and Natural Habitats

NASA Astrophysics Data System (ADS)

Streich, M.; Wetz, J. J.; Ajemian, M. J.; Stunz, G. W.

2016-02-01

The goal of our study was to evaluate the relative abundance, size and age structure of Red Snapper among three different habitat types (standing oil and gas platforms, artificial reefs [rigs-to-reefs], and natural banks) in the northwestern Gulf of Mexico. From May 2013 - January 2015, we conducted 140 vertical line sets and captured 1538 Red Snapper ranging in size from 251 to 855 mm TL. Ages determined for 801 of these fish ranged from 2-30 years. No differences were detected in Red Snapper CPUE among the three habitats. However, a comparison of TL and TW distributions suggested that natural banks supported a greater proportion of larger fish than artificial reefs or standing platforms (K-S test, p<0.001). Mean TW-at-age regressions for the most common age groups (ages 3-7) suggested that Red Snapper grew faster at artificial reefs and standing platforms than natural bank habitats (ANCOVA, p<0.05). Mean age was positively correlated with capture depth (r=0.79) suggesting spatial variation in age composition. These results have important implications for artificial reef development and Red Snapper management in the GOM. Further use of standardized, fishery-independent surveys and additional biological data will help elucidate the role artificial structures play in maintaining the Red Snapper population.

Defining critical habitats of threatened and endemic reef fishes with a multivariate approach.

PubMed

Purcell, Steven W; Clarke, K Robert; Rushworth, Kelvin; Dalton, Steven J

2014-12-01

Understanding critical habitats of threatened and endemic animals is essential for mitigating extinction risks, developing recovery plans, and siting reserves, but assessment methods are generally lacking. We evaluated critical habitats of 8 threatened or endemic fish species on coral and rocky reefs of subtropical eastern Australia, by measuring physical and substratum-type variables of habitats at fish sightings. We used nonmetric and metric multidimensional scaling (nMDS, mMDS), Analysis of similarities (ANOSIM), similarity percentages analysis (SIMPER), permutational analysis of multivariate dispersions (PERMDISP), and other multivariate tools to distinguish critical habitats. Niche breadth was widest for 2 endemic wrasses, and reef inclination was important for several species, often found in relatively deep microhabitats. Critical habitats of mainland reef species included small caves or habitat-forming hosts such as gorgonian corals and black coral trees. Hard corals appeared important for reef fishes at Lord Howe Island, and red algae for mainland reef fishes. A wide range of habitat variables are required to assess critical habitats owing to varied affinities of species to different habitat features. We advocate assessments of critical habitats matched to the spatial scale used by the animals and a combination of multivariate methods. Our multivariate approach furnishes a general template for assessing the critical habitats of species, understanding how these vary among species, and determining differences in the degree of habitat specificity. © 2014 Society for Conservation Biology.

Geomorphological diversity of Dong-Sha Atoll based on spectrum and texture analysis in high resolution remote sensing imagery

NASA Astrophysics Data System (ADS)

Chen, Jianyu; Mao, Zhihua; He, Xianqiang

2009-01-01

Coral reefs are complex marine ecosystems that are constructed and maintained by biological communities that thrive in tropical oceans. The Dong-Sha Atoll is located at the northern continental margin of the South China Sea. It has being abused by destructive activity of human being and natural event during recent decades. Remote sensing offers a powerful tool for studying coral reef geomorphology and is the most cost-effective approach for large-scale reef survey. In this paper, the high-resolution Quickbird2 imageries which covered the full atoll are used to categorize the current distribution of coral reefs geomorphological structure therein with the auxiliary SPOT5 and ASTER imageries. Spectral and texture analysis are used to distinguish the geomorphological diversity during data processing. The Gray Level Co-occurrence Matrices is adopted for texture feature extraction and atoll geomorphology mapping in the high-resolution pan-color image of Quickbird2. Quickbird2 is considered as the most appropriate image source for coral reefs studies. In the Dong-Sha Atoll, various dynamical geomorphologic units are developed according to wave energy zones. There the reef frame types are classified to 3 different types according as its diversity at the image. The radial structure system is the most characteristic and from high resolution imagery we can distinguish the discrepancy between them.

Restoration of oyster reefs in an estuarine lake: population dynamics and shell accretion

USGS Publications Warehouse

Casas, Sandra M.; La Peyre, Jerome F.; La Peyre, Megan K.

2015-01-01

Restoration activities inherently depend on understanding the spatial and temporal variation in basic demographic rates of the species of interest. For species that modify and maintain their own habitat such as the eastern oyster Crassostrea virginica, understanding demographic rates and their impacts on population and habitat success are crucial to ensuring restoration success. We measured oyster recruitment, density, size distribution, biomass, mortality and Perkinsus marinus infection intensity quarterly for 3 yr on shallow intertidal reefs created with shell cultch in March 2009. All reefs were located within Sister Lake, LA. Reefs were placed in pairs at 3 different locations within the lake; pairs were placed in low and medium energy sites within each location. Restored reefs placed within close proximity (<8 km) experienced very different development trajectories; there was high inter-site and inter-annual variation in recruitment and mortality of oysters, with only slight variation in growth curves. Despite this high variation in population dynamics, all reefs supported dense oyster populations (728 ± 102 ind. m-2) and high live oyster biomass (>14.6 kg m-2) at the end of 3 yr. Shell accretion, on average, exceeded estimated rates required to keep pace with local subsidence and shell loss. Variation in recruitment, growth and survival drives local site-specific population success, which highlights the need to understand local water quality, hydrodynamics, and metapopulation dynamics when planning restoration.

Higher species richness of octocorals in the upper mesophotic zone in Eilat (Gulf of Aqaba) compared to shallower reef zones

NASA Astrophysics Data System (ADS)

Shoham, Erez; Benayahu, Yehuda

2017-03-01

Mesophotic coral-reef ecosystems (MCEs), which comprise the light-dependent communities of corals and other organisms found at depths between 30 and 150 m, have received very little study to date. However, current technological advances, such as remotely operated vehicles and closed-circuit rebreather diving, now enable their thorough investigation. Following the reef-building stony corals, octocorals are the second most common benthic component on many shallow reefs and a major component on deep reefs, the Red Sea included. This study is the first to examine octocoral community features on upper MCEs based on species-level identification and to compare them with the shallower reef zones. The study was carried out at Eilat (Gulf of Aqaba, northern Red Sea), comparing octocoral communities at two mesophotic reefs (30-45 m) and two shallow reef zones (reef flat and upper fore-reef) by belt transects. A total of 30 octocoral species were identified, with higher species richness on the upper MCEs compared to the shallower reefs. Although the MCEs were found to host a higher number of species than the shallower reefs, both featured a similar diversity. Each reef zone revealed a unique octocoral species composition and distinct community structure, with only 16% of the species shared by both the MCEs and the shallower reefs. This study has revealed an almost exclusive dominance of zooxanthellate species at the studied upper MCE reefs, thus indicating an adequate light regime for photosynthesis there. The findings should encourage similar studies on other reefs, aimed at understanding the spatiotemporal features and ecological role of octocorals in reef ecosystems down to the deepest limit of the MCEs.

Wave Dissipation on Low- to Super-Energy Coral Reefs

NASA Astrophysics Data System (ADS)

Harris, D. L.

2016-02-01

Coral reefs are valuable, complex and bio-diverse ecosystems and are also known to be one of the most effective barriers to swell events in coastal environments. Previous research has found coral reefs to be remarkably efficient in removing most of the wave energy during the initial breaking and transformation on the reef flats. The rate of dissipation is so rapid that coral reefs have been referred to as rougher than any known coastal barrier. The dissipation of wave energy across reef flats is crucial in maintaining the relatively low-energy conditions in the back reef and lagoonal environments providing vital protection to adjacent beach or coastal regions from cyclone and storm events. A shift in the regulation of wave energy by reef flats could have catastrophic consequences ecologically, socially, and economically. This study examined the dissipation of wave energy during two swell events in Tahiti and Moorea, French Polyesia. Field sites were chosen in varying degrees of exposure and geomorphology from low-energy protected sites (Tiahura, Moorea) to super-energy sites (Teahupo'o, Tahiti). Waves were measured during two moderate to large swell events in cross reef transects using short-term high-resolution pressure transducers. Wave conditions were found to be similar in all back reef locations despite the very different wave exposure at each reef site. However, wave conditions on the reef flats were different and mirrored the variation in wave exposure with depth over the reef flat the primary regulator of reef flat wave height. These results indicate that coral reef flats evolve morphodynamically with the wave climate, which creates coral reef geomorphologies capable of dissipating wave energy that results in similar back reef wave conditions regardless of the offshore wave climate.

The relative importance of local retention and inter-reef dispersal of neutrally buoyant material on coral reefs

NASA Astrophysics Data System (ADS)

Black, Kerry P.

1993-03-01

Reef-scale, eddy-resolving numerical models are applied to discriminate between local trapping of neutrally buoyant passive material coming from a natal reef versus trapping of this material on reefs downstream. A hydrodynamic model is coupled with a Lagrangian (nongridded) dispersal simulation to map the movement of material such as passive larvae within and between natural reefs. To simplify the interpretation, a number of schematic reef shapes, sizes and spacings were devised to represent the most common cases typifying Australia's Great Barrier Reef. Prior investigations have shown that coral reefs on the Great Barrier Reef may retain material for times equivalent to the pelagic dispersal period of many species. This paper explores whether larvae are more likely to settle on the natal reef, settle downstream or fail to settle at all. The modelling neglects active larval behaviour and treats the vertically well-mixed case of notionally weightless particles only. The crown-of-thorns starfish larvae with a pelagic dispersal period of at least 10 days are one example of this case. Larvae are most likely to be found near the natal reef rather than its downstream neighbour, mostly because the currents take the vertically well-mixed material around, rather than onto, the downstream reef. Of all the simulations, the highest numbers were found on natal reefs (e.g. 8% after 10 days) while downstream numbers mostly varied between 0 and 1% after 10 days. Particle numbers equalised only when spacing between the two reefs was less than the reef length (6 km), or when the downstream reef was in the direct path of the larval stream.

A New Perspective: Assessing the Spatial Distribution of Coral Bleaching with Unmanned Low Altitude Remote Sensing Systems

NASA Astrophysics Data System (ADS)

Levy, J.; Franklin, E. C.; Hunter, C. L.

2016-12-01

Coral reefs are biodiversity hotspots that are vital to the function of global economic and biological processes. Coral bleaching is a significant contributor to the global decline of reefs and can impact an expansive reef area over short timescales. In order to understand the dynamics of coral bleaching and how these stress events impact reef ecosystems, it is important to conduct rapid bleaching surveys at functionally important spatial scales. Due to the inherent heterogeneity, size, and in some cases, remoteness of coral reefs, it is difficult to routinely monitor coral bleaching dynamics before, during, and after bleaching. Additionally, current in situ survey methods only collect snippets of discrete reef data over small reef areas, which are unable to accurately represent the reef as a whole. We present a new technique using small unmanned aerial systems (sUAS) as cost effective, efficient monitoring tools that target small to intermediate-scale reef dynamics to understand the spatial distribution of bleached coral colonies during the 2015 bleaching event on patch reefs in Kaneohe Bay, Oahu. Overlapping low altitude aerial images were collected at four reefs during the bleaching period and processed using Structure-from-Motion techniques to produce georeferenced and spatially accurate orthomosaics of complete reef areas. Mosaics were analyzed using manual and heuristic neural network classification schemes to identify comprehensive populations of bleached and live coral on each patch reef. We found that bleached colonies had random and clumped distributions on patch reefs in Kaneohe Bay depending on local environmental conditions. Our work demonstrates that sUAS provide a low cost, efficient platform that can rapidly and repeatedly collect high-resolution imagery (1 cm/pixel) and map large areas of shallow reef ecosystems (5 hectares). This study proves the feasibility of utilizing sUAS as a tool to collect spatially rich reef data that will provide reef scientists a new perspective on meso-scale coral reef dynamics. We envision that similar low altitude aerial surveys will be incorporated as a standard component of shallow-water reef studies, especially on reefs too dangerous or remote for in situ surveys.

Correlation Between Existence of Reef Sharks with Abundance of Reef Fishes in South Waters of Morotai Island (North Moluccas)

NASA Astrophysics Data System (ADS)

Mukharror, Darmawan Ahmad; Tiara Baiti, Isnaini; Ichsan, Muhammad; Pridina, Niomi; Triutami, Sanny

2017-10-01

Despite increasing academic research citation on biology, abundance, and the behavior of the blacktip reef sharks, the influence of reef fish population on the density of reef sharks: Carcharhinus melanopterus and Triaenodon obesus population in its habitat were largely unassessed. This present study examined the correlation between abundance of reef fishes family/species with the population of reef sharks in Southern Waters of Morotai Island. The existence of reef sharks was measured with the Audible Stationary Count (ASC) methods and the abundance of reef fishes was surveyed using Underwater Visual Census (UVC) combined with Diver Operated Video (DOV) census. The coefficient of Determination (R2) was used to investigate the degree of relationships between sharks and the specific reef fishes species. The research from 8th April to 4th June 2015 showed the strong positive correlations between the existence of reef sharks with abundance of reef fishes. The correlation values between Carcharhinus melanopterus/Triaenodon obesus with Chaetodon auriga was 0.9405, blacktip/whitetip reef sharks versus Ctenochaetus striatus was 0.9146, and Carcharhinus melanopterus/Triaenodon obesus to Chaetodon kleinii was 0.8440. As the shark can be worth more alive for shark diving tourism than dead in a fish market, the abundance of these reef fishes was important as an early indication parameter of shark existence in South Water of Morotai Island. In the long term, this highlights the importance of reef fishes abundance management in Morotai Island’s Waters to enable the establishment of appropriate and effective reef sharks conservation.

Do the shuffle: Changes in Symbiodinium consortia throughout juvenile coral development

PubMed Central

Reich, Hannah G.; Robertson, Deborah L.; Goodbody-Gringley, Gretchen

2017-01-01

Previous studies of symbiotic associations between scleractinians corals and Symbiodinium have demonstrated that the consortium of symbionts can change in response to environmental conditions. However, less is known about symbiont shuffling during early coral development, particularly in brooding species. This study examined whether Symbiodinium consortia (1) varied in Porites astreoides on shallow (10m) and upper mesophotic (30m) reefs, (2) changed during coral development, and (3) influenced growth of juveniles in different environments. Symbiodinium ITS2 sequences were amplified using universal primers and analyzed using phylotype-specific primers designed for phylotypes A, B, and C. Adults from both depths were found to host only phylotype A, phylotypes A and B, or phylotypes A, B, and C and the frequency of the phylotype composition did not vary with depth. However, phylotype A was the dominant symbiont that was vertically transmitted to the planulae. The presence of phylotypes B and C was detected in the majority of juveniles when transplanted onto the shallow and upper mesophotic reefs whereas only phylotype A was detected in the majority of juveniles reared in outdoor aquaria. In addition, growth of juvenile P. astreoides harboring different combinations of Symbiodinium phylotypes did not vary when transplanted to different reef zones. However, juveniles reared in in situ reef environments grew faster than those reared in ex situ outdoor aquaria. These results show that Symbiodinium consortia change during development of P. astreoides and are influenced by environmental conditions. PMID:28182684

A modeling tool to evaluate regional coral reef responses to changes in climate and ocean chemistry

USGS Publications Warehouse

Buddemeier, R.W.; Jokiel, P.L.; Zimmerman, K.M.; Lane, D.R.; Carey, J.M.; Bohling, Geoffrey C.; Martinich, J.A.

2008-01-01

We developed a spreadsheet-based model for the use of managers, conservationists, and biologists for projecting the effects of climate change on coral reefs at local-to-regional scales. The COMBO (Coral Mortality and Bleaching Output) model calculates the impacts to coral reefs from changes in average SST and CO2 concentrations, and from high temperature mortality (bleaching) events. The model uses a probabilistic assessment of the frequency of high temperature events under a future climate to address scientific uncertainties about potential adverse effects. COMBO offers data libraries and default factors for three selected regions (Hawai'i, Great Barrier Reef, and Caribbean), but it is structured with user-selectable parameter values and data input options, making possible modifications to reflect local conditions or to incorporate local expertise. Preliminary results from sensitivity analyses and simulation examples for Hawai'i demonstrate the relative importance of high temperature events, increased average temperature, and increased CO2 concentration on the future status of coral reefs; Illustrate significant interactions among variables; and allow comparisons of past environmental history with future predictions. ?? 2008, by the American Society of Limnology and Oceanugraphy, Inc.

Reserve design for uncertain responses of coral reefs to climate change.

PubMed

Mumby, Peter J; Elliott, Ian A; Eakin, C Mark; Skirving, William; Paris, Claire B; Edwards, Helen J; Enríquez, Susana; Iglesias-Prieto, Roberto; Cherubin, Laurent M; Stevens, Jamie R

2011-02-01

Rising sea temperatures cause mass coral bleaching and threaten reefs worldwide. We show how maps of variations in thermal stress can be used to help manage reefs for climate change. We map proxies of chronic and acute thermal stress and develop evidence-based hypotheses for the future response of corals to each stress regime. We then incorporate spatially realistic predictions of larval connectivity among reefs of the Bahamas and apply novel reserve design algorithms to create reserve networks for a changing climate. We show that scales of larval dispersal are large enough to connect reefs from desirable thermal stress regimes into a reserve network. Critically, we find that reserve designs differ according to the anticipated scope for phenotypic and genetic adaptation in corals, which remains uncertain. Attempts to provide a complete reserve design that hedged against different evolutionary outcomes achieved limited success, which emphasises the importance of considering the scope for adaptation explicitly. Nonetheless, 15% of reserve locations were selected under all evolutionary scenarios, making them a high priority for early designation. Our approach allows new insights into coral holobiont adaptation to be integrated directly into an adaptive approach to management. © 2010 Blackwell Publishing Ltd/CNRS.

Vertical variations of coral reef drag forces

NASA Astrophysics Data System (ADS)

Asher, Shai; Niewerth, Stephan; Koll, Katinka; Shavit, Uri; LWI Collaboration; Technion Collaboration

2017-11-01

Corals rely on water flow for the supply of nutrients, particles and energy. Therefore, modeling of processes that take place inside the reef, such as respiration and photosynthesis, relies on models that describe the flow and concentration fields. Due to the high spatial heterogeneity of branched coral reefs, depth average models are usually applied. Such an average approach is insufficient when the flow spatial variation inside the reef is of interest. We report on measurements of vertical variations of drag force that are needed for developing 3D flow models. Coral skeletons were densely arranged along a laboratory flume. Two corals were CT-scanned and replaced with horizontally sliced 3D printed replicates. Drag profiles were measured by connecting the slices to costume drag sensors and velocity profiles were measured using a LDV. The measured drag of whole colonies was in excellent agreement with previous studies; however, these studies never showed how drag varies inside the reef. In addition, these distributions of drag force showed an excellent agreement with momentum balance calculations. Based on the results, we propose a new drag model that includes the dispersive stresses, and consequently displays reduced vertical variations of the drag coefficient.

Water Column Correction for Coral Reef Studies by Remote Sensing

PubMed Central

Zoffoli, Maria Laura; Frouin, Robert; Kampel, Milton

2014-01-01

Human activity and natural climate trends constitute a major threat to coral reefs worldwide. Models predict a significant reduction in reef spatial extension together with a decline in biodiversity in the relatively near future. In this context, monitoring programs to detect changes in reef ecosystems are essential. In recent years, coral reef mapping using remote sensing data has benefited from instruments with better resolution and computational advances in storage and processing capabilities. However, the water column represents an additional complexity when extracting information from submerged substrates by remote sensing that demands a correction of its effect. In this article, the basic concepts of bottom substrate remote sensing and water column interference are presented. A compendium of methodologies developed to reduce water column effects in coral ecosystems studied by remote sensing that include their salient features, advantages and drawbacks is provided. Finally, algorithms to retrieve the bottom reflectance are applied to simulated data and actual remote sensing imagery and their performance is compared. The available methods are not able to completely eliminate the water column effect, but they can minimize its influence. Choosing the best method depends on the marine environment, available input data and desired outcome or scientific application. PMID:25215941

Water column correction for coral reef studies by remote sensing.

PubMed

Zoffoli, Maria Laura; Frouin, Robert; Kampel, Milton

2014-09-11

Human activity and natural climate trends constitute a major threat to coral reefs worldwide. Models predict a significant reduction in reef spatial extension together with a decline in biodiversity in the relatively near future. In this context, monitoring programs to detect changes in reef ecosystems are essential. In recent years, coral reef mapping using remote sensing data has benefited from instruments with better resolution and computational advances in storage and processing capabilities. However, the water column represents an additional complexity when extracting information from submerged substrates by remote sensing that demands a correction of its effect. In this article, the basic concepts of bottom substrate remote sensing and water column interference are presented. A compendium of methodologies developed to reduce water column effects in coral ecosystems studied by remote sensing that include their salient features, advantages and drawbacks is provided. Finally, algorithms to retrieve the bottom reflectance are applied to simulated data and actual remote sensing imagery and their performance is compared. The available methods are not able to completely eliminate the water column effect, but they can minimize its influence. Choosing the best method depends on the marine environment, available input data and desired outcome or scientific application.

Diagenesis and evolution of microporosity of Middle-Upper Devonian Kee Scarp reefs, Norman Wells, Northwest Territories, Canada: Petrographic and chemical evidence

DOE Office of Scientific and Technical Information (OSTI.GOV)

Al-Aasm, I.S.; Azmy, K.K.

The Middle-Upper Devonian Kee Scarp reef complexes of Norman Wells, Northwest Territories, Canada, are oil-producing, stromatoporoid-dominated carbonates. Episodic increases in the rate of sea level rise produced multiple cycles of reef growth that exhibit backstepping characteristics. These carbonates, composed of invariably altered limestones, have original interskeletal, intraskeletal, and intergranular porosity, mostly occluded by nonferroan, dull luminescent cements. Secondary porosity, represented by micropores of various types, developed during diagenesis by aggrading neomorphism and dissolution. The micropores represent the main reservoir porosity in the Kee Scarp limestone. Petrographic, chemical, and isotopic studies of Kee Scarp reef components reveal a complex diagenetic historymore » involving marine fluids modified by increasing water/rock interaction and burial. Neomorphic stabilization of skeletal components caused further depletion in {gamma}{sup 18}O but very little change in {gamma}{sup 13}C, an argument for modification of the original marine fluids with increasing burial. Variations in magnitude of water/rock interaction with depth, facies changes, and porosity modifications probably exerted some control on fractionation and distribution of stable isotopes and trace elements in reef components.« less

Australia Great Barrier Reef

NASA Image and Video Library

2001-04-11

The Great Barrier Reef extends for 2,000 kilometers along the northeastern coast of Australia. It is not a single reef, but a vast maze of reefs, passages, and coral cays islands that are part of the reef.

Benefits of biodiverse marine resources to child nutrition in differing developmental contexts in Hispaniola.

PubMed

Temsah, Gheda; Johnson, Kiersten; Evans, Thea; Adams, Diane K

2018-01-01

There is an urgent need for an improved empirical understanding of the relationship among biodiverse marine resources, human health and development outcomes. Coral reefs are often at this intersection for developing nations in the tropics-an ecosystem targeted for biodiversity conservation and one that provides sustenance and livelihoods for many coastal communities. To explore these relationships, we use the comparative development contexts of Haiti and the Dominican Republic on the island of Hispaniola. We combine child nutrition data from the Demographic Health Survey with coastal proximity and coral reef habitat diversity, and condition to empirically test human benefits of marine natural resources in differing development contexts. Our results indicate that coastal children have a reduced likelihood of severe stunting in Haiti but have increased likelihoods of stunting and reduced dietary diversity in the Dominican Republic. These contrasting results are likely due to the differential in developed infrastructure and market access. Our analyses did not demonstrate an association between more diverse and less degraded coral reefs and better childhood nutrition. The results highlight the complexities of modelling interactions between the health of humans and natural systems, and indicate the next steps needed to support integrated development programming.

Benefits of biodiverse marine resources to child nutrition in differing developmental contexts in Hispaniola

PubMed Central

Temsah, Gheda; Johnson, Kiersten; Evans, Thea

2018-01-01

There is an urgent need for an improved empirical understanding of the relationship among biodiverse marine resources, human health and development outcomes. Coral reefs are often at this intersection for developing nations in the tropics—an ecosystem targeted for biodiversity conservation and one that provides sustenance and livelihoods for many coastal communities. To explore these relationships, we use the comparative development contexts of Haiti and the Dominican Republic on the island of Hispaniola. We combine child nutrition data from the Demographic Health Survey with coastal proximity and coral reef habitat diversity, and condition to empirically test human benefits of marine natural resources in differing development contexts. Our results indicate that coastal children have a reduced likelihood of severe stunting in Haiti but have increased likelihoods of stunting and reduced dietary diversity in the Dominican Republic. These contrasting results are likely due to the differential in developed infrastructure and market access. Our analyses did not demonstrate an association between more diverse and less degraded coral reefs and better childhood nutrition. The results highlight the complexities of modelling interactions between the health of humans and natural systems, and indicate the next steps needed to support integrated development programming. PMID:29795591

Cruise Report; RV Moana Wave cruise M1-01-GM; the bathymetry and acoustic backscatter of the mid shelf to upper slope off Panama City, Florida, northeastern Gulf of Mexico; September 3, through October 12, 2001, Panama City, FL to Panama City, FL

USGS Publications Warehouse

Gardner, James V.; Mayer, Larry A.; Hughes-Clarke, John E.; Dartnell, Peter; Sulak, Kenneth J.

2001-01-01

A zone of deep-water reefs is thought to extend from the mid and outer shelf south of Mississippi and Alabama to at least the northwestern Florida shelf off Panama City, Florida (Figure 1, 67kb). The reefs off Mississippi and Alabama are found in water depths of 60 to 120 m (Ludwick and Walton, 1957; Gardner et al., in press) and were the focus of a multibeam echosounder (MBES) mapping survey by the U.S. Geological Survey (USGS) in 2000 (Gardner et al., 2000; in press). If this deep-water-reef trend does exist along the northwestern Florida shelf, then it is critical to determine the accurate geomorphology and type of the reefs that occur because of their importance as benthic habitats for fisheries. Precisely georeferenced high-resolution mapping of bathymetry is a fundamental first step in the study of areas suspected to be critical habitats. Morphology is thought to be critical to defining the distribution of dominant demersal plankton/planktivores communities. Fish faunas of shallow hermatypic reefs have been well studied, but those of deep ahermatypic reefs have been relatively ignored. The ecology of deep-water ahermatypic reefs is fundamentally different from hermatypic reefs because autochthonous intracellular symbiotic zooxanthellae (the carbon source for hermatypic corals) do not form the base of the trophic web in ahermatypic reefs. Instead, exogenous plankton, transported to the reef by currents, serves as the primary carbon source. Thus, one of the principle uses of the morphology data will be to identify whether any reefs found are hermatypic or ahermatypic in origin. Community structure and trophodynamics of demersal fishes of the outer continental of the northeastern Gulf of Mexico presently are the focus of a major USGS reseach project. A goal of the project is to answer questions concerning the relative roles played by morphology and surficial geology in controling biological differentiation. Deep-water reefs are important because they are fish havens, key spawning sites, and are critical early larval and juvenile habitats for economically important sport/food fishes. It is known that deep-water reefs function as a key source for re-population (via seasonal and ontogenetic migration) of heavily impacted inshore reefs. The deep-water reefs south of Mississippi and Alabama support a lush fauna of ahermatypic hard corals, soft corals, black corals, sessile crinoids and sponges, that together form a living habitat for a well-developed fish fauna. The fish fauna comprises typical Caribbean reef fishes and Carolinian shelf fishes, plus epipelagic fishes, and a few deep-sea fishes. The base of the megafaunal invertebrate food web is plankton, borne by essentially continuous semi-laminar currents generated by eddies, spawned off the Loop Current, that periodically travel across the shelf edge. A few, sidescan-sonar surveys have been made of areas locally identified as Destin Pinnacles, Steamboat Lumps Marine Reserve (Koenig et al., 2000; Scanlon, et al., 2000; 2001), Twin Ridges (Briere, et al., 2000; Scanlon, et al., 2000), and Madison-Swanson Marine Reserve (Koenig et al., 2000; Scanlon, et al., 2000; 2001). However, no quantitative and little qualitative information about the geomorphology and surficial geology can be gained from these data. Existing bathymetry along the northwestern Florida shelf suggests the existence of areas of possible isolated deep-water reefs. NOAA bathymetric maps NOS NH16-9 and NG16-12 show geomorphic expressions that hint of the presence of reefs in isolated areas rather than in a continuous zone. There has been no systematic, high-resolution bathymetry collected in this area, prior to this cruise. After the successful mapping of the deep-water reefs on the Mississippi and Alabama shelf (Gardner et al., 2000; in press), a partnership composed of the USGS, Minerals Management Service, and NOAA was formed to continue the deep-reef mapping to the northwest Florida mid shelf and upper slope. This cruise is the first fruit of that partnership.

First observations of the structure and megafaunal community of a large Lophelia reef on the Ghanaian shelf (the Gulf of Guinea)

NASA Astrophysics Data System (ADS)

Buhl-Mortensen, L.; Serigstad, B.; Buhl-Mortensen, P.; Olsen, M. N.; Ostrowski, M.; Błażewicz-Paszkowycz, M.; Appoh, E.

2017-03-01

The distribution of cold-water coral reefs is relatively well known in the North-east Atlantic as compared to the Central-east Atlantic, where only a few documentations exist from low latitudes. In 2012 an initial survey was conducted on a reef situated at 400 m depth on the continental shelf off Ghana. The reef corals and fauna were visually documented using a Video Assisted Multi Sampler (VAMS) coupled with an ROV. Here we present the results from three dives on the 1400 m long and 70 m high reef with an ambient temperatures between 9 and 10 °C. The banana shaped reef was oriented perpendicular to the main current, the convex side facing the current and there was no sign of human impact. The great height of the reef is probably a result of undisturbed growth for more than 20,000 years. On the Norwegian continental shelf the largest reefs are around 30 m high and have been aged to 9000 years. The reef morphology resembles that of Northeast Atlantic Lophelia reefs. The main reef building coral was Lophelia pertusa with contribution from Madrepora oculata, Solenosmilia variabilis, and occasional occurrences of Dendrophyllia cf. alternata. The skeleton of Aphrocallistes beatrix (Hexactinellidae) contributed to the reef framework and the reef consisted of 46% coral blocks 22% sediment, 13% coral rubble, 11% sponge skeleton and 8% live corals. A rich megafauna of 31 taxa was recorded and most frequent was Acesta excavate (bivalve), Aphrocallistes beatrix (with an associated Zooanthida on 39% of the colonies), squat lobsters, hydroids and bryozoans. Six fish species were recorded of which the Sebastidae Helicolenus dactylopterus and Nettastoma melanurum were found amongst coral blocks. The reef community showed several similarities with the northern reefs with sponges, Sebastes spp., squat lobsters, and Acesta excavata being common megafauna associates. In contrast the gorgonian corals that are characteristic of the northern reefs seemed to be lacking and Hexactinellidae rather than Demospongia were common on the reef and contributed to the reef framework. Crabs that are uncommon on northern reefs were frequently encountered.

Say what? Coral reef sounds as indicators of community assemblages and reef conditions

NASA Astrophysics Data System (ADS)

Mooney, T. A.; Kaplan, M. B.

2016-02-01

Coral reefs host some of the highest diversity of life on the planet. Unfortunately, reef health and biodiversity is declining or is threatened as a result of climate change and human influences. Tracking these changes is necessary for effective resource management, yet estimating marine biodiversity and tracking trends in ecosystem health is a challenging and expensive task, especially in many pristine reefs which are remote and difficult to access. Many fishes, mammals and invertebrates make sound. These sounds are reflective of a number of vital biological processes and are a cue for settling reef larvae. Biological sounds may be a means to quantify ecosystem health and biodiversity, however the relationship between coral reef soundscapes and the actual taxa present remains largely unknown. This study presents a comparative evaluation of the soundscape of multiple reefs, naturally differing in benthic cover and fish diversity, in the U.S. Virgin Islands National Park. Using multiple recorders per reef we characterized spacio-temporal variation in biological sound production within and among reefs. Analyses of sounds recorded over 4 summer months indicated diel trends in both fish and snapping shrimp acoustic frequency bands with crepuscular peaks at all reefs. There were small but statistically significant acoustic differences among sites on a given reef raising the possibility of potentially localized acoustic habitats. The strength of diel trends in lower, fish-frequency bands were correlated with coral cover and fish density, yet no such relationship was found with shrimp sounds suggesting that fish sounds may be of higher relevance to tracking certain coral reef conditions. These findings indicate that, in spite of considerable variability within reef soundscapes, diel trends in low-frequency sound production reflect reef community assemblages. Further, monitoring soundscapes may be an efficient means of establishing and monitoring reef conditions.

iss009e23808

NASA Image and Video Library

2004-09-20

ISS009-E-23808 (20 September 2004) --- A fringing coral reef in the Red Sea is featured in this image photographed by an Expedition 9 crewmember on the International Space Station (ISS). The Sudanese coast of the Red Sea is a well known destination for divers due to clear water and abundance of coral reefs (or “shia’ab” in Arabic). According to NASA scientists studying the ISS imagery, reefs are formed primarily from precipitation of calcium carbonate by corals; massive reef structures are built over thousands of years of succeeding generations of coral. In the Red Sea, fringing reefs form on shallow shelves of less than 50 meters depth along the coastline. This photograph illustrates the intricate morphology of the reef system located along the coast between Port Sudan to the northwest and the Tokar River delta to the southeast. Close to shore, fringing reefs border the coastline. Farther offshore grows a larger, more complicated barrier reef structure. Different parts of the reef structure show up as variable shades of light blue. Deeper water channels (darker blue) define the boundaries for individual reefs within the greater barrier reef system. Such a complex pattern of reefs may translate into greater ecosystem diversity through a wide variety of local reef environments.

Climate-driven coral reorganisation influences aggressive behaviour in juvenile coral-reef fishes

NASA Astrophysics Data System (ADS)

Kok, Judith E.; Graham, Nicholas A. J.; Hoogenboom, Mia O.

2016-06-01

Globally, habitat degradation is altering the abundance and diversity of species in a variety of ecosystems. This study aimed to determine how habitat degradation, in terms of changing coral composition under climate change, affected abundance, species richness and aggressive behaviour of juveniles of three damselfishes ( Pomacentrus moluccensis, P. amboinensis and Dischistodus perspicillatus, in order of decreasing reliance on coral). Patch reefs were constructed to simulate two types of reefs: present-day reefs that are vulnerable to climate-induced coral bleaching, and reefs with more bleaching-robust coral taxa, thereby simulating the likely future of coral reefs under a warming climate. Fish communities were allowed to establish naturally on the reefs during the summer recruitment period. Climate-robust reefs had lower total species richness of coral-reef fishes than climate-vulnerable reefs, but total fish abundance was not significantly different between reef types (pooled across all species and life-history stages). The nature of aggressive interactions, measured as the number of aggressive chases, varied according to coral composition; on climate-robust reefs, juveniles used the substratum less often to avoid aggression from competitors, and interspecific aggression became relatively more frequent than intraspecific aggression for juveniles of the coral-obligate P. moluccensis. This study highlights the importance of coral composition as a determinant of behaviour and diversity of coral-reef fishes.

A review of bottom-up vs. top-down control of sponges on Caribbean fore-reefs: what's old, what's new, and future directions.

PubMed

Pawlik, Joseph R; Loh, Tse-Lynn; McMurray, Steven E

2018-01-01

Interest in the ecology of sponges on coral reefs has grown in recent years with mounting evidence that sponges are becoming dominant members of reef communities, particularly in the Caribbean. New estimates of water column processing by sponge pumping activities combined with discoveries related to carbon and nutrient cycling have led to novel hypotheses about the role of sponges in reef ecosystem function. Among these developments, a debate has emerged about the relative effects of bottom-up (food availability) and top-down (predation) control on the community of sponges on Caribbean fore-reefs. In this review, we evaluate the impact of the latest findings on the debate, as well as provide new insights based on older citations. Recent studies that employed different research methods have demonstrated that dissolved organic carbon (DOC) and detritus are the principal sources of food for a growing list of sponge species, challenging the idea that the relative availability of living picoplankton is the sole proxy for sponge growth or abundance. New reports have confirmed earlier findings that reef macroalgae release labile DOC available for sponge nutrition. Evidence for top-down control of sponge community structure by fish predation is further supported by gut content studies and historical population estimates of hawksbill turtles, which likely had a much greater impact on relative sponge abundances on Caribbean reefs of the past. Implicit to investigations designed to address the bottom-up vs. top-down debate are appropriate studies of Caribbean fore-reef environments, where benthic communities are relatively homogeneous and terrestrial influences and abiotic effects are minimized. One recent study designed to test both aspects of the debate did so using experiments conducted entirely in shallow lagoonal habitats dominated by mangroves and seagrass beds. The top-down results from this study are reinterpreted as supporting past research demonstrating predator preferences for sponge species that are abundant in these lagoonal habitats, but grazed away in fore-reef habitats. We conclude that sponge communities on Caribbean fore-reefs of the past and present are largely structured by predation, and offer new directions for research, such as determining the environmental conditions under which sponges may be food-limited (e.g., deep sea, lagoonal habitats) and monitoring changes in sponge community structure as populations of hawksbill turtles rebound.

A review of bottom-up vs. top-down control of sponges on Caribbean fore-reefs: what’s old, what’s new, and future directions

PubMed Central

2018-01-01

Interest in the ecology of sponges on coral reefs has grown in recent years with mounting evidence that sponges are becoming dominant members of reef communities, particularly in the Caribbean. New estimates of water column processing by sponge pumping activities combined with discoveries related to carbon and nutrient cycling have led to novel hypotheses about the role of sponges in reef ecosystem function. Among these developments, a debate has emerged about the relative effects of bottom-up (food availability) and top-down (predation) control on the community of sponges on Caribbean fore-reefs. In this review, we evaluate the impact of the latest findings on the debate, as well as provide new insights based on older citations. Recent studies that employed different research methods have demonstrated that dissolved organic carbon (DOC) and detritus are the principal sources of food for a growing list of sponge species, challenging the idea that the relative availability of living picoplankton is the sole proxy for sponge growth or abundance. New reports have confirmed earlier findings that reef macroalgae release labile DOC available for sponge nutrition. Evidence for top-down control of sponge community structure by fish predation is further supported by gut content studies and historical population estimates of hawksbill turtles, which likely had a much greater impact on relative sponge abundances on Caribbean reefs of the past. Implicit to investigations designed to address the bottom-up vs. top-down debate are appropriate studies of Caribbean fore-reef environments, where benthic communities are relatively homogeneous and terrestrial influences and abiotic effects are minimized. One recent study designed to test both aspects of the debate did so using experiments conducted entirely in shallow lagoonal habitats dominated by mangroves and seagrass beds. The top-down results from this study are reinterpreted as supporting past research demonstrating predator preferences for sponge species that are abundant in these lagoonal habitats, but grazed away in fore-reef habitats. We conclude that sponge communities on Caribbean fore-reefs of the past and present are largely structured by predation, and offer new directions for research, such as determining the environmental conditions under which sponges may be food-limited (e.g., deep sea, lagoonal habitats) and monitoring changes in sponge community structure as populations of hawksbill turtles rebound. PMID:29404224

Coral colonisation of a shallow reef flat in response to rising sea level: quantification from 35 years of remote sensing data at Heron Island, Australia

NASA Astrophysics Data System (ADS)

Scopélitis, J.; Andréfouët, S.; Phinn, S.; Done, T.; Chabanet, P.

2011-12-01

Observations made on Heron Island reef flat during the 1970s-1990s highlighted the importance of rapid change in hydrodynamics and accommodation space for coral development. Between the 1940s and the 1990s, the minimum reef-flat top water level varied by some tens of centimetres, successively down then up, in rapid response to local engineering works. Coral growth followed sea-level variations and was quantified here for several coral communities using horizontal two-dimensional above water remotely sensed observations. This required seven high spatial resolution aerial photographs and Quickbird satellite images spanning 35 years: 1972, 1979, 1990, 1992, 2002, 2006 and 2007. The coral growth dynamics followed four regimes corresponding to artificially induced changes in sea levels: 1972-1979 (lowest growth rate): no detectable coral development, due to high tidal currents and minimum mean low-tide water level; 1979-1991 (higher growth rate): horizontal coral development promoted by calmer hydrodynamic conditions; 1991-2001(lower growth rate): vertical coral development, induced by increased local sea level by ~12 cm due to construction of new bund walls; 2001-2007 (highest growth rate): horizontal coral development after that vertical growth had become limited by sea level. This unique time-series displays a succession of ecological stage comprising a `catch-up' dynamic in response to a rapid local sea-level rise in spite of the occurrences of the most severe bleaching events on record (1998, 2002) and the decreasing calcification rates reported in massive corals in the northern part of the Great Barrier Reef.

Vessel-to-Reef Projects

EPA Pesticide Factsheets

Using vessels as artificial reefs is an option for disposal. Artificial reefs serve to benefit the environment. Vessel-to-reef projects can follow the best management practices guidance. Guidance are provided for how to clean up vessels for use as reefs.

Mapping Prevalence and Incidence of Coral Disease in reef-building corals at two Natural Reserves of the Southwest Puerto Rico

NASA Astrophysics Data System (ADS)

Sanchez Viruet, I.; Irizarry-Soto, E.; Ruiz-Valentín, I.

2016-02-01

Coral diseases seems to be the main cause of coral reef decline in the Caribbean. Before the bleaching event of 2005, coral reefs in Puerto Rico were dominated by the reef-building taxa: Orbicella annularis, Porites astreoides, Montastrea cavernosa, Agaricia agaracites and Colpophyllia natans. After the event, live-coral cover significantly declined and more than 90% of the scleractinian corals in the U.S. Virgin Islands and Puerto Rico showed signals of thermal stressors. The prevalence of coral diseases in five reef-building coral (Orbicella annularis, Orbicella franksi, Orbicella faveolata, Porites porites and Pseudiploria strigosa) species was assessed by tagging, photographing, and mapping all diseased and healthy colonies within 10 permanent 40m2 band transects at each inshore and mid-shelf reefs of Belvedere and Punta Guaniquilla Natural Reserves using a random stratified sampling method. Maximum and perpendicular diameter was used to assess coral size using Coral Point Count with Excel Extension. Corals were classified into three size class populations (class I: 0-50cm, class II: 50-100cm and class III: >100 cm). Data was used to develop a GIS-based map containing coral species, size and disease presence. Preliminary results of the inshore area showed a higher disease prevalence in Belvedere natural reserve and for P. strigosa (17.1%) and O. annularis (9.3%). Frequency distribution analysis showed a dominance of O. faveolata at Punta Guaniquilla and Belvedere (127 and 88 individuals respectively). Size class I dominates the distribution of each species within the natural reserves with a higher disease prevalence. Future work include continue prevalence surveys of the outer reef shelf on both natural reserves, monitoring and GIS-based mapping of incidence and resilience through time. This study will help in the assessment of the status of the coral reef of the southwest insular platform.

Assessment of Acropora palmata in the Mesoamerican Reef System

PubMed Central

Rodríguez-Martínez, Rosa E.; Banaszak, Anastazia T.; McField, Melanie D.; Beltrán-Torres, Aurora U.; Álvarez-Filip, Lorenzo

2014-01-01

The once-dominant shallow reef-building coral Acropora palmata has suffered drastic geographical declines in the wider Caribbean from a disease epidemic that began in the late 1970s. At present there is a lack of quantitative data to determine whether this species is recovering over large spatial scales. Here, we use quantitative surveys conducted in 107 shallow-water reef sites between 2010 and 2012 to investigate the current distribution and abundance of A. palmata along the Mesoamerican Reef System (MRS). Using historical data we also explored how the distribution and abundance of this species has changed in the northern portion of the MRS between 1985 and 2010–2012. A. palmata was recorded in only a fifth of the surveyed reef sites in 2010–2012. In the majority of these reef sites the presence of A. palmata was patchy and rare. Only one site (Limones reef), in the northernmost portion of the MRS, presented considerably high A. palmata cover (mean: 34.7%, SD: 24.5%). At this site, the size-frequency distribution of A. palmata colonies was skewed towards small colony sizes; 84% of the colonies were healthy, however disease prevalence increased with colony size. A comparison with historical data showed that in the northern portion of the MRS, in 1985, A. palmata occurred in 74% of the 31 surveyed sites and had a mean cover of 7.7% (SD = 9.0), whereas in 2010–2012 this species was recorded in 48% of the sites with a mean cover of 2.9% (SD = 7.5). A. palmata populations along the MRS are failing to recover the distribution and abundance they had prior to the 1980s. Investigating the biological (e.g., population genetics) and environmental conditions (e.g., sources of stress) of the few standing reefs with relatively high A. palmata cover is crucial for the development of informed restoration models for this species. PMID:24763319

Empirical models of transitions between coral reef states: effects of region, protection, and environmental change.

PubMed

Lowe, Phillip K; Bruno, John F; Selig, Elizabeth R; Spencer, Matthew

2011-01-01

There has been substantial recent change in coral reef communities. To date, most analyses have focussed on static patterns or changes in single variables such as coral cover. However, little is known about how community-level changes occur at large spatial scales. Here, we develop Markov models of annual changes in coral and macroalgal cover in the Caribbean and Great Barrier Reef (GBR) regions. We analyzed reef surveys from the Caribbean and GBR (1996-2006). We defined a set of reef states distinguished by coral and macroalgal cover, and obtained Bayesian estimates of the annual probabilities of transitions between these states. The Caribbean and GBR had different transition probabilities, and therefore different rates of change in reef condition. This could be due to differences in species composition, management or the nature and extent of disturbances between these regions. We then estimated equilibrium probability distributions for reef states, and coral and macroalgal cover under constant environmental conditions. In both regions, the current distributions are close to equilibrium. In the Caribbean, coral cover is much lower and macroalgal cover is higher at equilibrium than in the GBR. We found no evidence for differences in transition probabilities between the first and second halves of our survey period, or between Caribbean reefs inside and outside marine protected areas. However, our power to detect such differences may have been low. We also examined the effects of altering transition probabilities on the community state equilibrium, along a continuum from unfavourable (e.g., increased sea surface temperature) to favourable (e.g., improved management) conditions. Both regions showed similar qualitative responses, but different patterns of uncertainty. In the Caribbean, uncertainty was greatest about effects of favourable changes, while in the GBR, we are most uncertain about effects of unfavourable changes. Our approach could be extended to provide risk analysis for management decisions.

Six Month In Situ High-Resolution Carbonate Chemistry and Temperature Study on a Coral Reef Flat Reveals Asynchronous pH and Temperature Anomalies.

PubMed

Kline, David I; Teneva, Lida; Hauri, Claudine; Schneider, Kenneth; Miard, Thomas; Chai, Aaron; Marker, Malcolm; Dunbar, Rob; Caldeira, Ken; Lazar, Boaz; Rivlin, Tanya; Mitchell, Brian Gregory; Dove, Sophie; Hoegh-Guldberg, Ove

2015-01-01

Understanding the temporal dynamics of present thermal and pH exposure on coral reefs is crucial for elucidating reef response to future global change. Diel ranges in temperature and carbonate chemistry parameters coupled with seasonal changes in the mean conditions define periods during the year when a reef habitat is exposed to anomalous thermal and/or pH exposure. Anomalous conditions are defined as values that exceed an empirically estimated threshold for each variable. We present a 200-day time series from June through December 2010 of carbonate chemistry and environmental parameters measured on the Heron Island reef flat. These data reveal that aragonite saturation state, pH, and pCO2 were primarily modulated by biologically-driven changes in dissolved organic carbon (DIC) and total alkalinity (TA), rather than salinity and temperature. The largest diel temperature ranges occurred in austral spring, in October (1.5 - 6.6°C) and lowest diel ranges (0.9 - 3.2°C) were observed in July, at the peak of winter. We observed large diel total pH variability, with a maximum range of 7.7 - 8.5 total pH units, with minimum diel average pH values occurring during spring and maximum during fall. As with many other reefs, the nighttime pH minima on the reef flat were far lower than pH values predicted for the open ocean by 2100. DIC and TA both increased from June (end of Fall) to December (end of Spring). Using this high-resolution dataset, we developed exposure metrics of pH and temperature individually for intensity, duration, and severity of low pH and high temperature events, as well as a combined metric. Periods of anomalous temperature and pH exposure were asynchronous on the Heron Island reef flat, which underlines the importance of understanding the dynamics of co-occurrence of multiple stressors on coastal ecosystems.

Calcification by Reef-Building Sclerobionts

PubMed Central

Mallela, Jennie

2013-01-01

It is widely accepted that deteriorating water quality associated with increased sediment stress has reduced calcification rates on coral reefs. However, there is limited information regarding the growth and development of reef building organisms, aside from the corals themselves. This study investigated encruster calcification on five fore-reefs in Tobago subjected to a range of sedimentation rates (1.2 to 15.9 mg cm−2 d−1). Experimental substrates were used to assess rates of calcification in sclerobionts (e.g. crustose coralline algae, bryozoans and barnacles) across key reef microhabitats: cryptic (low-light), exposed (open-horizontal) and vertical topographic settings. Sedimentation negatively impacted calcification by photosynthesising crustose coralline algae in exposed microhabitats and encrusting foram cover (%) in exposed and cryptic substrates. Heterotrophs were not affected by sedimentation. Fore-reef, turbid water encruster assemblages calcified at a mean rate of 757 (SD ±317) g m−2 y−1. Different microhabitats were characterised by distinct calcareous encruster assemblages with different rates of calcification. Taxa with rapid lateral growth dominated areal cover but were not responsible for the majority of CaCO3 production. Cryptobiont assemblages were composed of a suite of calcifying taxa which included sciaphilic cheilostome bryozoans and suspension feeding barnacles. These calcified at mean rates of 20.1 (SD ±27) and 4.0 (SD ±3.6) g m−2 y−1 respectively. Encruster cover (%) on exposed and vertical substrates was dominated by crustose coralline algae which calcified at rates of 105.3 (SD ±67.7) g m−2 y−1 and 56.3 (SD ±8.3) g m−2 y−1 respectively. Globally, encrusting organisms contribute significant amounts of carbonate to the reef framework. These results provide experimental evidence that calcification rates, and the importance of different encrusting organisms, vary significantly according to topography and sediment impacts. These findings also highlight the need for caution when modelling reef framework accretion and interpreting results which extrapolate information from limited data. PMID:23555864

Calcification rates of the massive coral Siderastrea siderea and crustose coralline algae along the Florida Keys (USA) outer-reef tract

USGS Publications Warehouse

Kuffner, I.B.; Hickey, T.D.; Morrison, J.M.

2013-01-01

Coral reefs are degrading on a global scale, and rates of reef-organism calcification are predicted to decline due to ocean warming and acidification. Systematic measurements of calcification over space and time are necessary to detect change resulting from environmental stressors. We established a network of calcification monitoring stations at four managed reefs along the outer Florida Keys Reef Tract (FKRT) from Miami to the Dry Tortugas. Eighty colonies (in two sequential sets of 40) of the reef-building coral, Siderastrea siderea, were transplanted to fixed apparatus that allowed repetitive detachment for buoyant weighing every 6 months. Algal-recruitment tiles were also deployed during each weighing interval to measure net calcification of the crustose coralline algal (CCA) community. Coral-calcification rates were an order of magnitude greater than those of CCA. Rates of coral calcification were seasonal (summer calcification was 53% greater than winter), and corals in the Dry Tortugas calcified 48% faster than those at the other three sites. Linear extension rates were also highest in the Dry Tortugas, whereas percent area of the coral skeletons excavated by bioeroding fauna was lowest. The spatial patterns in net coral calcification revealed here correlate well with Holocene reef thickness along the FKRT and, in part, support the “inimical waters hypothesis” proposed by Ginsburg, Hudson, and Shinn almost 50 yrs ago to explain reef development in this region. Due to the homogeneity in coral-calcification rates among the three main Keys sites, we recommend refinement of this hypothesis and suggest that water-quality variables (e.g., carbonate mineral saturation state, dissolved and particulate organic matter, light attenuation) be monitored alongside calcification in future studies. Our results demonstrate that our calcification monitoring network presents a feasible and worthwhile approach to quantifying potential impacts of ocean acidification, warming, and/or deteriorating water quality on the process of calcification.

Six Month In Situ High-Resolution Carbonate Chemistry and Temperature Study on a Coral Reef Flat Reveals Asynchronous pH and Temperature Anomalies

PubMed Central

Kline, David I.; Teneva, Lida; Hauri, Claudine; Schneider, Kenneth; Miard, Thomas; Chai, Aaron; Marker, Malcolm; Dunbar, Rob; Caldeira, Ken; Lazar, Boaz; Rivlin, Tanya; Mitchell, Brian Gregory; Dove, Sophie; Hoegh-Guldberg, Ove

2015-01-01

Understanding the temporal dynamics of present thermal and pH exposure on coral reefs is crucial for elucidating reef response to future global change. Diel ranges in temperature and carbonate chemistry parameters coupled with seasonal changes in the mean conditions define periods during the year when a reef habitat is exposed to anomalous thermal and/or pH exposure. Anomalous conditions are defined as values that exceed an empirically estimated threshold for each variable. We present a 200-day time series from June through December 2010 of carbonate chemistry and environmental parameters measured on the Heron Island reef flat. These data reveal that aragonite saturation state, pH, and pCO2 were primarily modulated by biologically-driven changes in dissolved organic carbon (DIC) and total alkalinity (TA), rather than salinity and temperature. The largest diel temperature ranges occurred in austral spring, in October (1.5 – 6.6°C) and lowest diel ranges (0.9 – 3.2°C) were observed in July, at the peak of winter. We observed large diel total pH variability, with a maximum range of 7.7 – 8.5 total pH units, with minimum diel average pH values occurring during spring and maximum during fall. As with many other reefs, the nighttime pH minima on the reef flat were far lower than pH values predicted for the open ocean by 2100. DIC and TA both increased from June (end of Fall) to December (end of Spring). Using this high-resolution dataset, we developed exposure metrics of pH and temperature individually for intensity, duration, and severity of low pH and high temperature events, as well as a combined metric. Periods of anomalous temperature and pH exposure were asynchronous on the Heron Island reef flat, which underlines the importance of understanding the dynamics of co-occurrence of multiple stressors on coastal ecosystems. PMID:26039687

A diverse assemblage of reef corals thriving in a dynamic intertidal reef setting (Bonaparte Archipelago, Kimberley, Australia).

PubMed

Richards, Zoe T; Garcia, Rodrigo A; Wallace, Carden C; Rosser, Natalie L; Muir, Paul R

2015-01-01

The susceptibility of reef-building corals to climatic anomalies is well documented and a cause of great concern for the future of coral reefs. Reef corals are normally considered to tolerate only a narrow range of climatic conditions with only a small number of species considered heat-tolerant. Occasionally however, corals can be seen thriving in unusually harsh reef settings and these are cause for some optimism about the future of coral reefs. Here we document for the first time a diverse assemblage of 225 species of hard corals occurring in the intertidal zone of the Bonaparte Archipelago, north western Australia. We compare the environmental conditions at our study site (tidal regime, SST and level of turbidity) with those experienced at four other more typical tropical reef locations with similar levels of diversity. Physical extremes in the Bonaparte Archipelago include tidal oscillations of up to 8 m, long subaerial exposure times (>3.5 hrs), prolonged exposure to high SST and fluctuating turbidity levels. We conclude the timing of low tide in the coolest parts of the day ameliorates the severity of subaerial exposure, and the combination of strong currents and a naturally high sediment regime helps to offset light and heat stress. The low level of anthropogenic impact and proximity to the Indo-west Pacific centre of diversity are likely to further promote resistance and resilience in this community. This assemblage provides an indication of what corals may have existed in other nearshore locations in the past prior to widespread coastal development, eutrophication, coral predator and disease outbreaks and coral bleaching events. Our results call for a re-evaluation of what conditions are optimal for coral survival, and the Bonaparte intertidal community presents an ideal model system for exploring how species resilience is conferred in the absence of confounding factors such as pollution.

Calcification rates of the massive coral Siderastrea siderea and crustose coralline algae along the Florida Keys (USA) outer-reef tract

NASA Astrophysics Data System (ADS)

Kuffner, I. B.; Hickey, T. D.; Morrison, J. M.

2013-12-01

Coral reefs are degrading on a global scale, and rates of reef-organism calcification are predicted to decline due to ocean warming and acidification. Systematic measurements of calcification over space and time are necessary to detect change resulting from environmental stressors. We established a network of calcification monitoring stations at four managed reefs along the outer Florida Keys Reef Tract (FKRT) from Miami to the Dry Tortugas. Eighty colonies (in two sequential sets of 40) of the reef-building coral, Siderastrea siderea, were transplanted to fixed apparatus that allowed repetitive detachment for buoyant weighing every 6 months. Algal-recruitment tiles were also deployed during each weighing interval to measure net calcification of the crustose coralline algal (CCA) community. Coral-calcification rates were an order of magnitude greater than those of CCA. Rates of coral calcification were seasonal (summer calcification was 53 % greater than winter), and corals in the Dry Tortugas calcified 48 % faster than those at the other three sites. Linear extension rates were also highest in the Dry Tortugas, whereas percent area of the coral skeletons excavated by bioeroding fauna was lowest. The spatial patterns in net coral calcification revealed here correlate well with Holocene reef thickness along the FKRT and, in part, support the "inimical waters hypothesis" proposed by Ginsburg, Hudson, and Shinn almost 50 yrs ago to explain reef development in this region. Due to the homogeneity in coral-calcification rates among the three main Keys sites, we recommend refinement of this hypothesis and suggest that water-quality variables (e.g., carbonate mineral saturation state, dissolved and particulate organic matter, light attenuation) be monitored alongside calcification in future studies. Our results demonstrate that our calcification monitoring network presents a feasible and worthwhile approach to quantifying potential impacts of ocean acidification, warming, and/or deteriorating water quality on the process of calcification.

Reef sharks: recent advances in ecological understanding to inform conservation.

PubMed

Osgood, G J; Baum, J K

2015-12-01

Sharks are increasingly being recognized as important members of coral-reef communities, but their overall conservation status remains uncertain. Nine of the 29 reef-shark species are designated as data deficient in the IUCN Red List, and three-fourths of reef sharks had unknown population trends at the time of their assessment. Fortunately, reef-shark research is on the rise. This new body of research demonstrates reef sharks' high site restriction, fidelity and residency on coral reefs, their broad trophic roles connecting reef communities and their high population genetic structure, all information that should be useful for their management and conservation. Importantly, recent studies on the abundance and population trends of the three classic carcharhinid reef sharks (grey reef shark Carcharhinus amblyrhynchos, blacktip reef shark Carcharhinus melanopterus and whitetip reef shark Triaenodon obesus) may contribute to reassessments identifying them as more vulnerable than currently realized. Because over half of the research effort has focused on only these three reef sharks and the nurse shark Ginglymostoma cirratum in only a few locales, there remain large taxonomic and geographic gaps in reef-shark knowledge. As such, a large portion of reef-shark biodiversity remains uncharacterized despite needs for targeted research identified in their red list assessments. A research agenda for the future should integrate abundance, life history, trophic ecology, genetics, habitat use and movement studies, and expand the breadth of such research to understudied species and localities, in order to better understand the conservation requirements of these species and to motivate effective conservation solutions. © 2015 The Fisheries Society of the British Isles.

New evidence for the barrier reef model, Permian Capitan Reef complex, New Mexico

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kirkland, B.L.; Moore, C.H. Jr.

1990-05-01

Recent paleontologic and petrologic observations suggest that the Capitan Formation was deposited as an organic or ecologic reef that acted as an emergent barrier to incoming wave energy. In outcrops in the Guadalupe Mountains and within Carlsbad Caverns, massive reef boundstone contains a highly diverse assemblage of frame-building and binding organisms. In modern reefs, diversity among frame builders decreases dramatically with depth. Marine cement is abundant in reef boundstone, but limited in back-reef grainstone and packstone. This cementation pattern is similar to that observed in modern emergent barrier reef systems. Based on comparison with modern analogs, these dasycladrominated back-reef sedimentsmore » and their associated biota are indicative of shallow, hypersaline conditions. Few of these dasyclads exhibit broken or abraded segments and some thallus sections are still articulated suggesting that low-energy, hypersaline conditions occurred immediately shelfward of the reef. In addition, large-scale topographic features, such as possible spur and groove structures between Walnut Canyon and Rattlesnake Canyon, and facies geometries, such as the reef to shelf transition, resemble those found in modern shallow-water reefs. The organisms that formed the Capitan Reef appear to have lived in, and responded to, physical and chemical conditions similar to those that control the geometry of modern shallow-water reefs. Like their modern counterparts, they seem to have strongly influenced adjacent environments. In light of this evidence, consideration should be given to either modifying or abandoning the marginal mound model in favor of the originally proposed barrier reef model.« less

Suitable Environmental Ranges for Potential Coral Reef Habitats in the Tropical Ocean

PubMed Central

Guan, Yi; Hohn, Sönke; Merico, Agostino

2015-01-01

Coral reefs are found within a limited range of environmental conditions or tolerance limits. Estimating these limits is a critical prerequisite for understanding the impacts of climate change on the biogeography of coral reefs. Here we used the diagnostic model ReefHab to determine the current environmental tolerance limits for coral reefs and the global distribution of potential coral reef habitats as a function of six factors: temperature, salinity, nitrate, phosphate, aragonite saturation state, and light. To determine these tolerance limits, we extracted maximum and minimum values of all environmental variables in corresponding locations where coral reefs are present. We found that the global, annually averaged tolerance limits for coral reefs are 21.7—29.6 °C for temperature, 28.7—40.4 psu for salinity, 4.51 μmol L-1 for nitrate, 0.63 μmol L-1 for phosphate, and 2.82 for aragonite saturation state. The averaged minimum light intensity in coral reefs is 450 μmol photons m-2 s-1. The global area of potential reef habitats calculated by the model is 330.5 × 103 km2. Compared with previous studies, the tolerance limits for temperature, salinity, and nutrients have not changed much, whereas the minimum value of aragonite saturation in coral reef waters has decreased from 3.28 to 2.82. The potential reef habitat area calculated with ReefHab is about 121×103 km2 larger than the area estimated from the charted reefs, suggesting that the growth potential of coral reefs is higher than currently observed. PMID:26030287

Suitable environmental ranges for potential coral reef habitats in the tropical ocean.

PubMed

Guan, Yi; Hohn, Sönke; Merico, Agostino

2015-01-01

Coral reefs are found within a limited range of environmental conditions or tolerance limits. Estimating these limits is a critical prerequisite for understanding the impacts of climate change on the biogeography of coral reefs. Here we used the diagnostic model ReefHab to determine the current environmental tolerance limits for coral reefs and the global distribution of potential coral reef habitats as a function of six factors: temperature, salinity, nitrate, phosphate, aragonite saturation state, and light. To determine these tolerance limits, we extracted maximum and minimum values of all environmental variables in corresponding locations where coral reefs are present. We found that the global, annually averaged tolerance limits for coral reefs are 21.7-29.6 °C for temperature, 28.7-40.4 psu for salinity, 4.51 μmol L-1 for nitrate, 0.63 μmol L-1 for phosphate, and 2.82 for aragonite saturation state. The averaged minimum light intensity in coral reefs is 450 μmol photons m-2 s-1. The global area of potential reef habitats calculated by the model is 330.5 × 103 km2. Compared with previous studies, the tolerance limits for temperature, salinity, and nutrients have not changed much, whereas the minimum value of aragonite saturation in coral reef waters has decreased from 3.28 to 2.82. The potential reef habitat area calculated with ReefHab is about 121×103 km2 larger than the area estimated from the charted reefs, suggesting that the growth potential of coral reefs is higher than currently observed.

76 FR 64327 - Fisheries of the Caribbean, Gulf of Mexico, and South Atlantic; Gulf of Mexico Reef Fish Fishery...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-10-18

... Drum, Reef Fish, Shrimp, and Coral and Coral Reefs Fishery Management Plans (Generic ACL Amendment) for... the Caribbean, Gulf of Mexico, and South Atlantic; Gulf of Mexico Reef Fish Fishery; South Atlantic... management unit in the Fishery Management Plan for Reef Fish Resources of the Gulf of Mexico (Reef Fish FMP...

Coral Reefs: An English Compilation of Activities for Middle School Students.

ERIC Educational Resources Information Center

Walker, Sharon H.; Newton, R. Amanda; Ortiz, Alida

This activity book on coral reefs for middle school students is divided into 10 sections. Section 1 contains the introduction. Section 2 describes what coral reefs are while section 3 describes how coral reefs reproduce and grow. Section 4 discusses where coral reefs are found and section 5 describes life on a coral reef. Section 6 discusses the…

Coral reef resilience through biodiversity

USGS Publications Warehouse

Rogers, Caroline S.

2013-01-01

Irrefutable evidence of coral reef degradation worldwide and increasing pressure from rising seawater temperatures and ocean acidification associated with climate change have led to a focus on reef resilience and a call to “manage” coral reefs for resilience. Ideally, global action to reduce emission of carbon dioxide and other greenhouse gases will be accompanied by local action. Effective management requires reduction of local stressors, identification of the characteristics of resilient reefs, and design of marine protected area networks that include potentially resilient reefs. Future research is needed on how stressors interact, on how climate change will affect corals, fish, and other reef organisms as well as overall biodiversity, and on basic ecological processes such as connectivity. Not all reef species and reefs will respond similarly to local and global stressors. Because reef-building corals and other organisms have some potential to adapt to environmental changes, coral reefs will likely persist in spite of the unprecedented combination of stressors currently affecting them. The biodiversity of coral reefs is the basis for their remarkable beauty and for the benefits they provide to society. The extraordinary complexity of these ecosystems makes it both more difficult to predict their future and more likely they will have a future.

Effects of region, demography, and protection from fishing on batch fecundity of common coral trout ( Plectropomus leopardus)

NASA Astrophysics Data System (ADS)

Carter, Alex B.; Davies, Campbell R.; Mapstone, Bruce D.; Russ, Garry R.; Tobin, Andrew J.; Williams, Ashley J.

2014-09-01

Batch fecundity of female Plectropomus leopardus, a coral reef fish targeted by commercial and recreational fishing, was compared between reefs open to fishing and reefs within no-take marine reserves within three regions of the Great Barrier Reef (GBR), Australia. Length, weight, and age had positive effects on batch fecundity of spawners from northern and central reefs but negligible effects on spawners from southern reefs. Females were least fecund for a given length, weight, and age in the southern GBR. Batch fecundity of a 500-mm fork length female was 430 % greater on central reefs and 207 % greater on northern reefs than on southern reefs. The effects of length and age on batch fecundity did not differ significantly between reserve and fished reefs in any region, but weight-specific fecundity was 100 % greater for large 2.0 kg females on reserve reefs compared with fished reefs in the central GBR. We hypothesize that regional variation in batch fecundity is likely driven by water temperature and prey availability. Significant regional variation in batch fecundity highlights the need for understanding spatial variation in reproductive output where single conservation or fishery management strategies cover large, potentially diverse, spatial scales.

Flow-sediment-oyster interaction around degraded, restored, and reference oyster reefs in Florida's Indian River Lagoon

NASA Astrophysics Data System (ADS)

Kitsikoudis, V.; Kibler, K. M.; Spiering, D. W.

2017-12-01

This study analyzes flow patterns and sediment distributions around three oyster reefs in a bar-built estuarine lagoon. We studied a degraded reef, a recently restored reef, and a reference condition reef with a healthy live oyster community. The restored reef had been regraded and restored with oyster shell mats to aid in recruitment of oyster spat, with the goal of reestablishing a healthy oyster community. Despite the fact that flow-biota-sediment interaction constitutes a blossoming research field, actual field data are sparse and current knowledge emanates from flume studies and numerical modeling. Moreover, the hydraulic effect of restored oyster reefs has not been thoroughly investigated and it is not clear if the flow field and sediment erosion/deposition are similar or diverge from natural reefs. Instantaneous three-dimensional flow velocities were collected on reefs using a Nortek Vectrino Profiler and an acoustic Doppler current profiler (Nortek Aquadopp). The former measured a 2 - 3 cm velocity profile above the oyster bed, while the latter quantified incoming velocities across the flow profile approximately 10 m from the edge of the reef. Flow measurements were conducted during rising tides and are coupled with simultaneous wind speed and direction data. In addition, 20 cm deep sediment cores were retrieved on and off the investigated reefs. Sediment grain size distributions were determined after individual cores were processed for loss on ignition. Incoming flow velocities were as high as 10 cm/s, relatively higher than those recorded close to reefs. Mean and turbulent flow velocities close to the reefs, varied among the investigated sites, despite the similar wind flow conditions offshore. For instance, the measurements at the degraded reef showed decreased wave attenuation and augmented flow velocities compared to the other sites. Boat wakes exhibited a very distinct signal in the flow velocity time-series and significantly increased the approaching flow velocity at the reefs. The oyster roughness height at the restored reef (68 mm) was higher than the roughness at the reference reef (45 mm); however, the variance was higher at the latter. Sediments from degraded reef and the recently restored reef were coarser and contained less organic matter compared to the reference condition reef.

Simulating reef response to sea-level rise at Lizard Island: A geospatial approach

NASA Astrophysics Data System (ADS)

Hamylton, S. M.; Leon, J. X.; Saunders, M. I.; Woodroffe, C. D.

2014-10-01

Sea-level rise will result in changes in water depth over coral reefs, which will influence reef platform growth as a result of carbonate production and accretion. This study simulates the pattern of reef response on the reefs around Lizard Island in the northern Great Barrier Reef. Two sea-level rise scenarios are considered to capture the range of likely projections: 0.5 m and 1.2 m above 1990 levels by 2100. Reef topography has been established through extensive bathymetric profiling, together with available data, including LiDAR, single beam bathymetry, multibeam swath bathymetry, LADS and digitised chart data. The reef benthic cover around Lizard Island has been classified using a high resolution WorldView-2 satellite image, which is calibrated and validated against a ground referencing dataset of 364 underwater video records of the reef benthic character. Accretion rates are parameterised using published hydrochemical measurements taken in-situ and rules are applied using Boolean logic to incorporate geomorphological transitions associated with different depth ranges, such as recolonisation of the reef flat when it becomes inundated as sea level rises. Simulations indicate a variable platform response to the different sea-level rise scenarios. For the 0.5 m rise, the shallower reef flats are gradually colonised by corals, enabling this active geomorphological zone to keep up with the lower rate of rise while the other sand dominated areas get progressively deeper. In the 1.2 m scenario, a similar pattern is evident for the first 30 years of rise, beyond which the whole reef platform begins to slowly drown. To provide insight on reef response to sea-level rise in other areas, simulation results of four different reef settings are discussed and compared at the southeast reef flat (barrier reef), Coconut Beach (fringing reef), Watson's Bay (leeward bay with coral patches) and Mangrove Beach (sheltered lagoonal embayment). The reef sites appear to accrete upwards at a rate commensurate with the rate of rise, thereby maintaining their original profile and position relative to the sea surface and the leeward and lagoonal sites with a low accretion rate maintain a similar profile but slowly gain depth relative to sea-level. The result of this variable response is that elevated features of the reef platform, such as reef patches and crests tend to become more pronounced.

Predicting the Location and Spatial Extent of Submerged Coral Reef Habitat in the Great Barrier Reef World Heritage Area, Australia

PubMed Central

Bridge, Tom; Beaman, Robin; Done, Terry; Webster, Jody

2012-01-01

Aim Coral reef communities occurring in deeper waters have received little research effort compared to their shallow-water counterparts, and even such basic information as their location and extent are currently unknown throughout most of the world. Using the Great Barrier Reef as a case study, habitat suitability modelling is used to predict the distribution of deep-water coral reef communities on the Great Barrier Reef, Australia. We test the effectiveness of a range of geophysical and environmental variables for predicting the location of deep-water coral reef communities on the Great Barrier Reef. Location Great Barrier Reef, Australia. Methods Maximum entropy modelling is used to identify the spatial extent of two broad communities of habitat-forming megabenthos phototrophs and heterotrophs. Models were generated using combinations of geophysical substrate properties derived from multibeam bathymetry and environmental data derived from Bio-ORACLE, combined with georeferenced occurrence records of mesophotic coral communities from autonomous underwater vehicle, remotely operated vehicle and SCUBA surveys. Model results are used to estimate the total amount of mesophotic coral reef habitat on the GBR. Results Our models predict extensive but previously undocumented coral communities occurring both along the continental shelf-edge of the Great Barrier Reef and also on submerged reefs inside the lagoon. Habitat suitability for phototrophs is highest on submerged reefs along the outer-shelf and the deeper flanks of emergent reefs inside the GBR lagoon, while suitability for heterotrophs is highest in the deep waters along the shelf-edge. Models using only geophysical variables consistently outperformed models incorporating environmental data for both phototrophs and heterotrophs. Main Conclusion Extensive submerged coral reef communities that are currently undocumented are likely to occur throughout the Great Barrier Reef. High-quality bathymetry data can be used to identify these reefs, which may play an important role in resilience of the GBR ecosystem to climate change. PMID:23118952

Impacts and recovery from severe tropical cyclone Yasi on the Great Barrier Reef.

PubMed

Beeden, Roger; Maynard, Jeffrey; Puotinen, Marjetta; Marshall, Paul; Dryden, Jen; Goldberg, Jeremy; Williams, Gareth

2015-01-01

Full recovery of coral reefs from tropical cyclone (TC) damage can take decades, making cyclones a major driver of habitat condition where they occur regularly. Since 1985, 44 TCs generated gale force winds (≥17 metres/second) within the Great Barrier Reef Marine Park (GBRMP). Of the hurricane strength TCs (≥H1-Saffir Simpson scale; ≥ category 3 Australian scale), TC Yasi (February, 2011) was the largest. In the weeks after TC Yasi crossed the GBRMP, participating researchers, managers and rangers assessed the extent and severity of reef damage via 841 Reef Health and Impact Surveys at 70 reefs. Records were scaled into five damage levels representing increasingly widespread colony-level damage (1, 2, 3) and reef structural damage (4, 5). Average damage severity was significantly affected by direction (north vs south of the cyclone track), reef shelf position (mid-shelf vs outer-shelf) and habitat type. More outer-shelf reefs suffered structural damage than mid-shelf reefs within 150 km of the track. Structural damage spanned a greater latitudinal range for mid-shelf reefs than outer-shelf reefs (400 vs 300 km). Structural damage was patchily distributed at all distances, but more so as distance from the track increased. Damage extended much further from the track than during other recent intense cyclones that had smaller circulation sizes. Just over 15% (3,834 km2) of the total reef area of the GBRMP is estimated to have sustained some level of coral damage, with ~4% (949 km2) sustaining a degree of structural damage. TC Yasi likely caused the greatest loss of coral cover on the GBR in a 24-hour period since 1985. Severely impacted reefs have started to recover; coral cover increased an average of 4% between 2011 and 2013 at re-surveyed reefs. The in situ assessment of impacts described here is the largest in scale ever conducted on the Great Barrier Reef following a reef health disturbance.

Regional hard coral distribution within geomorphic and reef flat ecological zones determined by satellite imagery of the Xisha Islands, South China Sea

NASA Astrophysics Data System (ADS)

Zuo, Xiuling; Su, Fenzhen; Zhao, Huanting; Zhang, Junjue; Wang, Qi; Wu, Di

2017-05-01

Coral reefs in the Xisha Islands (also known as the Paracel Islands in English), South China Sea, have experienced dramatic declines in coral cover. However, the current regional scale hard coral distribution of geomorphic and ecological zones, essential for reefs management in the context of global warming and ocean acidification, is not well documented. We analyzed data from field surveys, Landsat-8 and GF-1 images to map the distribution of hard coral within geomorphic zones and reef flat ecological zones. In situ surveys conducted in June 2014 on nine reefs provided a complete picture of reef status with regard to live coral diversity, evenness of coral cover and reef health (live versus dead cover) for the Xisha Islands. Mean coral cover was 12.5% in 2014 and damaged reefs seemed to show signs of recovery. Coral cover in sheltered habitats such as lagoon patch reefs and biotic dense zones of reef flats was higher, but there were large regional differences and low diversity. In contrast, the more exposed reef slopes had high coral diversity, along with high and more equal distributions of coral cover. Mean hard coral cover of other zones was <10%. The total Xisha reef system was estimated to cover 1 060 km2, and the emergent reefs covered 787 m2. Hard corals of emergent reefs were considered to cover 97 km2. The biotic dense zone of the reef flat was a very common zone on all simple atolls, especially the broader northern reef flats. The total cover of live and dead coral can reach above 70% in this zone, showing an equilibrium between live and dead coral as opposed to coral and algae. This information regarding the spatial distribution of hard coral can support and inform the management of Xisha reef ecosystems.

Impacts and Recovery from Severe Tropical Cyclone Yasi on the Great Barrier Reef

PubMed Central

Beeden, Roger; Maynard, Jeffrey; Puotinen, Marjetta; Marshall, Paul; Dryden, Jen; Goldberg, Jeremy; Williams, Gareth

2015-01-01

Full recovery of coral reefs from tropical cyclone (TC) damage can take decades, making cyclones a major driver of habitat condition where they occur regularly. Since 1985, 44 TCs generated gale force winds (≥17 metres/second) within the Great Barrier Reef Marine Park (GBRMP). Of the hurricane strength TCs (≥H1—Saffir Simpson scale; ≥ category 3 Australian scale), TC Yasi (February, 2011) was the largest. In the weeks after TC Yasi crossed the GBRMP, participating researchers, managers and rangers assessed the extent and severity of reef damage via 841 Reef Health and Impact Surveys at 70 reefs. Records were scaled into five damage levels representing increasingly widespread colony-level damage (1, 2, 3) and reef structural damage (4, 5). Average damage severity was significantly affected by direction (north vs south of the cyclone track), reef shelf position (mid-shelf vs outer-shelf) and habitat type. More outer-shelf reefs suffered structural damage than mid-shelf reefs within 150 km of the track. Structural damage spanned a greater latitudinal range for mid-shelf reefs than outer-shelf reefs (400 vs 300 km). Structural damage was patchily distributed at all distances, but more so as distance from the track increased. Damage extended much further from the track than during other recent intense cyclones that had smaller circulation sizes. Just over 15% (3,834 km2) of the total reef area of the GBRMP is estimated to have sustained some level of coral damage, with ~4% (949 km2) sustaining a degree of structural damage. TC Yasi likely caused the greatest loss of coral cover on the GBR in a 24-hour period since 1985. Severely impacted reefs have started to recover; coral cover increased an average of 4% between 2011 and 2013 at re-surveyed reefs. The in situ assessment of impacts described here is the largest in scale ever conducted on the Great Barrier Reef following a reef health disturbance. PMID:25874718

A geological perspective on the degradation and conservation of western Atlantic coral reefs.

PubMed

Kuffner, Ilsa B; Toth, Lauren T

2016-08-01

Continuing coral-reef degradation in the western Atlantic is resulting in loss of ecological and geologic functions of reefs. With the goal of assisting resource managers and stewards of reefs in setting and measuring progress toward realistic goals for coral-reef conservation and restoration, we examined reef degradation in this region from a geological perspective. The importance of ecosystem services provided by coral reefs-as breakwaters that dissipate wave energy and protect shorelines and as providers of habitat for innumerable species-cannot be overstated. However, the few coral species responsible for reef building in the western Atlantic during the last approximately 1.5 million years are not thriving in the 21st century. These species are highly sensitive to abrupt temperature extremes, prone to disease infection, and have low sexual reproductive potential. Their vulnerability and the low functional redundancy of branching corals have led to the low resilience of western Atlantic reef ecosystems. The decrease in live coral cover over the last 50 years highlights the need for study of relict (senescent) reefs, which, from the perspective of coastline protection and habitat structure, may be just as important to conserve as the living coral veneer. Research is needed to characterize the geological processes of bioerosion, reef cementation, and sediment transport as they relate to modern-day changes in reef elevation. For example, although parrotfish remove nuisance macroalgae, possibly promoting coral recruitment, they will not save Atlantic reefs from geological degradation. In fact, these fish are quickly nibbling away significant quantities of Holocene reef framework. The question of how different biota covering dead reefs affect framework resistance to biological and physical erosion needs to be addressed. Monitoring and managing reefs with respect to physical resilience, in addition to ecological resilience, could optimize the expenditure of resources in conserving Atlantic reefs and the services they provide. © 2016 The Authors. Conservation Biology published by Wiley Periodicals, Inc., on behalf of Society for Conservation Biology.

Bottlenecks to coral recovery in the Seychelles

NASA Astrophysics Data System (ADS)

Chong-Seng, K. M.; Graham, N. A. J.; Pratchett, M. S.

2014-06-01

Processes that affect recovery of coral assemblages require investigation because coral reefs are experiencing a diverse array of more frequent disturbances. Potential bottlenecks to coral recovery include limited larval supply, low rates of settlement, and high mortality of new recruits or juvenile corals. We investigated spatial variation in local abundance of scleractinian corals in the Seychelles at three distinct life history stages (recruits, juveniles, and adults) on reefs with differing benthic conditions. Following widespread coral loss due to the 1998 bleaching event, some reefs are recovering (i.e., relatively high scleractinian coral cover: `coral-dominated'), some reefs have low cover of living macrobenthos and unconsolidated rubble substrates (`rubble-dominated'), and some reefs have high cover of macroalgae (`macroalgal-dominated'). Rates of coral recruitment to artificial settlement tiles were similar across all reef conditions, suggesting that larval supply does not explain differential coral recovery across the three reef types. However, acroporid recruits were absent on macroalgal-dominated reefs (0.0 ± 0.0 recruits tile-1) in comparison to coral-dominated reefs (5.2 ± 1.6 recruits tile-1). Juvenile coral colony density was significantly lower on macroalgal-dominated reefs (2.4 ± 1.1 colonies m-2), compared to coral-dominated reefs (16.8 ± 2.4 m-2) and rubble-dominated reefs (33.1 ± 7.3 m-2), suggesting that macroalgal-dominated reefs have either a bottleneck to successful settlement on the natural substrates or a high post-settlement mortality bottleneck. Rubble-dominated reefs had very low cover of adult corals (10.0 ± 1.7 %) compared to coral-dominated reefs (33.4 ± 3.6 %) despite no statistical difference in their juvenile coral densities. A bottleneck caused by low juvenile colony survivorship on unconsolidated rubble-dominated reefs is possible, or alternatively, recruitment to rubble-dominated reefs has only recently begun. This study identified bottlenecks to recovery of coral assemblages that varied depending on post-disturbance habitat condition.

Prioritizing Land and Sea Conservation Investments to Protect Coral Reefs

PubMed Central

Klein, Carissa J.; Ban, Natalie C.; Halpern, Benjamin S.; Beger, Maria; Game, Edward T.; Grantham, Hedley S.; Green, Alison; Klein, Travis J.; Kininmonth, Stuart; Treml, Eric; Wilson, Kerrie; Possingham, Hugh P.

2010-01-01

Background Coral reefs have exceptional biodiversity, support the livelihoods of millions of people, and are threatened by multiple human activities on land (e.g. farming) and in the sea (e.g. overfishing). Most conservation efforts occur at local scales and, when effective, can increase the resilience of coral reefs to global threats such as climate change (e.g. warming water and ocean acidification). Limited resources for conservation require that we efficiently prioritize where and how to best sustain coral reef ecosystems. Methodology/Principal Findings Here we develop the first prioritization approach that can guide regional-scale conservation investments in land- and sea-based conservation actions that cost-effectively mitigate threats to coral reefs, and apply it to the Coral Triangle, an area of significant global attention and funding. Using information on threats to marine ecosystems, effectiveness of management actions at abating threats, and the management and opportunity costs of actions, we calculate the rate of return on investment in two conservation actions in sixteen ecoregions. We discover that marine conservation almost always trumps terrestrial conservation within any ecoregion, but terrestrial conservation in one ecoregion can be a better investment than marine conservation in another. We show how these results could be used to allocate a limited budget for conservation and compare them to priorities based on individual criteria. Conclusions/Significance Previous prioritization approaches do not consider both land and sea-based threats or the socioeconomic costs of conserving coral reefs. A simple and transparent approach like ours is essential to support effective coral reef conservation decisions in a large and diverse region like the Coral Triangle, but can be applied at any scale and to other marine ecosystems. PMID:20814570

Prioritizing land and sea conservation investments to protect coral reefs.

PubMed

Klein, Carissa J; Ban, Natalie C; Halpern, Benjamin S; Beger, Maria; Game, Edward T; Grantham, Hedley S; Green, Alison; Klein, Travis J; Kininmonth, Stuart; Treml, Eric; Wilson, Kerrie; Possingham, Hugh P

2010-08-30

Coral reefs have exceptional biodiversity, support the livelihoods of millions of people, and are threatened by multiple human activities on land (e.g. farming) and in the sea (e.g. overfishing). Most conservation efforts occur at local scales and, when effective, can increase the resilience of coral reefs to global threats such as climate change (e.g. warming water and ocean acidification). Limited resources for conservation require that we efficiently prioritize where and how to best sustain coral reef ecosystems. Here we develop the first prioritization approach that can guide regional-scale conservation investments in land- and sea-based conservation actions that cost-effectively mitigate threats to coral reefs, and apply it to the Coral Triangle, an area of significant global attention and funding. Using information on threats to marine ecosystems, effectiveness of management actions at abating threats, and the management and opportunity costs of actions, we calculate the rate of return on investment in two conservation actions in sixteen ecoregions. We discover that marine conservation almost always trumps terrestrial conservation within any ecoregion, but terrestrial conservation in one ecoregion can be a better investment than marine conservation in another. We show how these results could be used to allocate a limited budget for conservation and compare them to priorities based on individual criteria. Previous prioritization approaches do not consider both land and sea-based threats or the socioeconomic costs of conserving coral reefs. A simple and transparent approach like ours is essential to support effective coral reef conservation decisions in a large and diverse region like the Coral Triangle, but can be applied at any scale and to other marine ecosystems.

Mapping Health of Bonaire Coral Reefs Using a Lightweight Hyperspectral Mapping System - First Results

NASA Astrophysics Data System (ADS)

Suomalainen, Juha; Mucher, Sander; Kooistra, Lammert; Meesters, Erik

2014-05-01

The Dutch Caribbean island of Bonaire is one of the world's top diving holiday destinations much due to its clear waters and healthy coral reefs. The coral reefs surround the western side of the island as an approximately 50-150m wide band. However, the general consensus is that the extent and biodiversity of the Bonarian coral reef is constantly decreasing due to anthropogenic pressures. The last extensive study of the health of the reef ecosystem was performed in 1985 by Van Duyl creating an underwater atlas. In order to update this atlas of Bonaire's coral reefs, in October 2013, a hyperspectral mapping campaign was performed using the WUR Hyperspectral Mapping System (HYMSY). A dive validation campaign has been planned for early 2014. The HYMSY consists of a custom pushbroom spectrometer (range 450-950nm, FWHM 9nm, ~20 lines/s, 328 pixels/line), a consumer camera (collecting 16MPix raw image every 2 seconds), a GPS-Inertia Navigation System (GPS-INS), and synchronization and data storage units. The weight of the system at take-off is 2.0kg allowing it to be mounted on varying platforms. In Bonaire the system was flown on two platforms. (1) on a Cessna airplane to provide a coverage for whole west side of the island with a hyperspectral map in 2-4m resolution and a RGB orthomosaic in 15cm resolution, and (2) on a kite pulled by boat and car to provide a subset coverage in higher resolution. In this presentation we will present our mapping technique and first results including a preliminary underwater atlas and conclusions on reef development.

Environmental controls on daytime net community calcification on a Red Sea reef flat

NASA Astrophysics Data System (ADS)

Bernstein, W. N.; Hughen, K. A.; Langdon, C.; McCorkle, D. C.; Lentz, S. J.

2016-06-01

Coral growth and carbonate accumulation form the foundation of the coral reef ecosystem. Changes in environmental conditions due to coastal development, climate change, and ocean acidification may pose a threat to net carbonate production in the near future. Controlled laboratory studies demonstrate that calcification by corals and coralline algae is sensitive to changes in aragonite saturation state (Ωa), as well as temperature, light, and nutrition. Studies also show that the dissolution rate of carbonate substrates is impacted by changes in carbonate chemistry. The sensitivity of coral reefs to these parameters must be confirmed and quantified in the natural environment in order to predict how coral reefs will respond to local and global changes, particularly ocean acidification. We estimated the daytime hourly net community metabolic rates, both net community calcification (NCC) and net community productivity (NCP), at Sheltered Reef, an offshore platform reef in the central Red Sea. Average NCC was 8 ± 3 mmol m-2 h-1 in December 2010 and 11 ± 1 mmol m-2 h-1 in May 2011, and NCP was 21 ± 7 mmol m-2 h-1 in December 2010 and 44 ± 4 mmol m-2 h-1 in May 2011. We also monitored a suite of physical and chemical properties to help relate the rates at Sheltered Reef to published rates from other sites. While previous research shows that short-term field studies investigating the NCC-Ωa relationship have differing results due to confounding factors, it is important to continue estimating NCC in different places, seasons, and years, in order to monitor changes in NCC versus Ω in space and time, and to ultimately resolve a broader understanding of this relationship.

Coral Colonisation of an Artificial Reef in a Turbid Nearshore Environment, Dampier Harbour, Western Australia

PubMed Central

Blakeway, David; Byers, Michael; Stoddart, James; Rossendell, Jason

2013-01-01

A 0.6 hectare artificial reef of local rock and recycled concrete sleepers was constructed in December 2006 at Parker Point in the industrial port of Dampier, western Australia, with the aim of providing an environmental offset for a nearshore coral community lost to land reclamation. Corals successfully colonised the artificial reef, despite the relatively harsh environmental conditions at the site (annual water temperature range 18-32°C, intermittent high turbidity, frequent cyclones, frequent nearby ship movements). Coral settlement to the artificial reef was examined by terracotta tile deployments, and later stages of coral community development were examined by in-situ visual surveys within fixed 25 x 25 cm quadrats on the rock and concrete substrates. Mean coral density on the tiles varied from 113 ± 17 SE to 909 ± 85 SE per m2 over five deployments, whereas mean coral density in the quadrats was only 6.0 ± 1.0 SE per m2 at eight months post construction, increasing to 24.0 ± 2.1 SE per m2 at 62 months post construction. Coral taxa colonising the artificial reef were a subset of those on the surrounding natural reef, but occurred in different proportions— Pseudosiderastreatayami , Mycediumelephantotus and Leptastrea purpurea being disproportionately abundant on the artificial reef. Coral cover increased rapidly in the later stages of the study, reaching 2.3 ± 0.7 SE % at 62 months post construction. This study indicates that simple materials of opportunity can provide a suitable substrate for coral recruitment in Dampier Harbour, and that natural colonisation at the study site remains sufficient to initiate a coral community on artificial substrate despite ongoing natural and anthropogenic perturbations. PMID:24040405

Using an ecosystem service decision support tool to support ridge to reef management: An example of sediment reduction in west Maui, Hawaii

NASA Astrophysics Data System (ADS)

Falinski, K. A.; Oleson, K.; Htun, H.; Kappel, C.; Lecky, J.; Rowe, C.; Selkoe, K.; White, C.

2016-12-01

Faced with anthropogenic stressors and declining coral reef states, managers concerned with restoration and resilience of coral reefs are increasingly recognizing the need to take a ridge-to-reef, ecosystem-based approach. An ecosystem services framing can help managers move towards these goals, helping to illustrate trade-offs and opportunities of management actions in terms of their impacts on society. We describe a research program building a spatial ecosystem services-based decision-support tool, and being applied to guide ridge-to-reef management in a NOAA priority site in West Maui. We use multiple modeling methods to link biophysical processes to ecosystem services and their spatial flows and social values in an integrating platform. Modeled services include water availability, sediment retention, nutrient retention and carbon sequestration on land. A coral reef ecosystem service model is under development to capture the linkages between terrestrial and coastal ecosystem services. Valuation studies are underway to quantify the implications for human well-being. The tool integrates techniques from decision science to facilitate decision making. We use the sediment retention model to illustrate the types of analyses the tool can support. The case study explores the tradeoffs between road rehabilitation costs and sediment export avoided. We couple the sediment and cost models with trade-off analysis to identify optimal distributed solutions that are most cost-effective in reducing erosion, and then use those models to estimate sediment exposure to coral reefs. We find that cooperation between land owners reveals opportunities for maximizing the benefits of fixing roads and minimizes costs. This research forms the building blocks of an ecosystem service decision support tool that we intend to continue to test and apply in other Pacific Island settings.

Fishing degrades size structure of coral reef fish communities.

PubMed

Robinson, James P W; Williams, Ivor D; Edwards, Andrew M; McPherson, Jana; Yeager, Lauren; Vigliola, Laurent; Brainard, Russell E; Baum, Julia K

2017-03-01

Fishing pressure on coral reef ecosystems has been frequently linked to reductions of large fishes and reef fish biomass. Associated impacts on overall community structure are, however, less clear. In size-structured aquatic ecosystems, fishing impacts are commonly quantified using size spectra, which describe the distribution of individual body sizes within a community. We examined the size spectra and biomass of coral reef fish communities at 38 US-affiliated Pacific islands that ranged in human presence from near pristine to human population centers. Size spectra 'steepened' steadily with increasing human population and proximity to market due to a reduction in the relative biomass of large fishes and an increase in the dominance of small fishes. Reef fish biomass was substantially lower on inhabited islands than uninhabited ones, even at inhabited islands with the lowest levels of human presence. We found that on populated islands size spectra exponents decreased (analogous to size spectra steepening) linearly with declining biomass, whereas on uninhabited islands there was no relationship. Size spectra were steeper in regions of low sea surface temperature but were insensitive to variation in other environmental and geomorphic covariates. In contrast, reef fish biomass was highly sensitive to oceanographic conditions, being influenced by both oceanic productivity and sea surface temperature. Our results suggest that community size structure may be a more robust indicator than fish biomass to increasing human presence and that size spectra are reliable indicators of exploitation impacts across regions of different fish community compositions, environmental drivers, and fisheries types. Size-based approaches that link directly to functional properties of fish communities, and are relatively insensitive to abiotic variation across biogeographic regions, offer great potential for developing our understanding of fishing impacts in coral reef ecosystems. © 2016 John Wiley & Sons Ltd.

New maps, new information: Coral reefs of the Florida keys

USGS Publications Warehouse

Lidz, B.H.; Reich, C.D.; Peterson, R.L.; Shinn, E.A.

2006-01-01

A highly detailed digitized map depicts 22 benthic habitats in 3140.5 km2 of the Florida Keys National Marine Sanctuary. Dominant are a seagrass/lime-mud zone (map area 27.5%) throughout Hawk Channel and seagrass/carbonate-sand (18.7%) and bare carbonate-sand (17.3%) zones on the outer shelf and in The Quicksands. A lime-mud/seagrass-covered muddy carbonate-sand zone (9.6%) abuts the keys. Hardbottom communities (13.2%) consist of bare Pleistocene coralline and oolitic limestone, coral rubble, and senile coral reefs. Smaller terrestrial (4.0%) and marine habitats, including those of live coral (patch reefs, 0.7%), account for the rest (13.7%) of the area. Derived from aerial photomosaics, the seabed dataset fits precisely when transposed onto a newly developed National Geophysical Data Center hydrographic-bathymetry map. Combined, the maps point to new information on unstudied seabed morphologies, among them an erosional nearshore rock ledge bordering the seaward side of the Florida Keys and thousands of patch-reef clusters aligned in mid-Hawk Channel. Preliminary indications are that the ledge may represent the seaward extent of the 125-ka Key Largo and Miami Limestone that form the keys, and the patch reefs colonized landward edges of two noncoralline, non-dune-ridge topographic troughs. The troughs, their substrate, and inner-shelf location along the seaward side of the Hawk Channel bedrock depression are the first of that type of nuclei to be recognized in the Florida reef record. Together, the map datasets establish the efficacy and accuracy of using aerial photographs to define in extraordinary detail the seabed features and habitats in a shallow-reef setting.

Coral colonisation of an artificial reef in a turbid nearshore environment, Dampier Harbour, western Australia.

PubMed

Blakeway, David; Byers, Michael; Stoddart, James; Rossendell, Jason

2013-01-01

A 0.6 hectare artificial reef of local rock and recycled concrete sleepers was constructed in December 2006 at Parker Point in the industrial port of Dampier, western Australia, with the aim of providing an environmental offset for a nearshore coral community lost to land reclamation. Corals successfully colonised the artificial reef, despite the relatively harsh environmental conditions at the site (annual water temperature range 18-32°C, intermittent high turbidity, frequent cyclones, frequent nearby ship movements). Coral settlement to the artificial reef was examined by terracotta tile deployments, and later stages of coral community development were examined by in-situ visual surveys within fixed 25 x 25 cm quadrats on the rock and concrete substrates. Mean coral density on the tiles varied from 113 ± 17 SE to 909 ± 85 SE per m(2) over five deployments, whereas mean coral density in the quadrats was only 6.0 ± 1.0 SE per m(2) at eight months post construction, increasing to 24.0 ± 2.1 SE per m(2) at 62 months post construction. Coral taxa colonising the artificial reef were a subset of those on the surrounding natural reef, but occurred in different proportions--Pseudosiderastrea tayami, Mycedium elephantotus and Leptastrea purpurea being disproportionately abundant on the artificial reef. Coral cover increased rapidly in the later stages of the study, reaching 2.3 ± 0.7 SE % at 62 months post construction. This study indicates that simple materials of opportunity can provide a suitable substrate for coral recruitment in Dampier Harbour, and that natural colonisation at the study site remains sufficient to initiate a coral community on artificial substrate despite ongoing natural and anthropogenic perturbations.

Healthy coral reefs may assure coastal protection in face of climate change related sea level rise

NASA Astrophysics Data System (ADS)

Harris, D. L.; Rovere, A.; Parravicini, V.; Casella, E.; Canavesio, R.; Collin, A.

2016-12-01

Coral reefs are diverse ecosystems that support millions of people worldwide providing crucial services, of which, coastal protection is one of the most relevant. The efficiency of coral reefs in protecting coastlines and dissipating waves is directly linked to the cover of living corals and three dimensional reef structural complexity. Climate change and human impacts are leading to severe global reductions in live coral cover, posing serious concerns regarding the capacity of degraded reef systems in protecting tropical coastal regions. Although it is known that the loss of structurally complex reefs may lead to greater erosion of coastlines, this process has rarely been quantified and it is still unknown whether the maintenance of healthy reefs through conservation will be enough to guarantee coastal protection during rising sea levels. We show that a significant loss of wave dissipation and a subsequent increase in back-reef wave height (up to 5 times present wave height) could occur even at present sea level if living corals are lost and reef structural complexity is reduced. Yet we also show that healthy reefs, measured by structural complexity and efficiency of vertical reef accretion, may maintain their present capacity of wave dissipation even under rising sea levels. Our results indicate that the health of coral reefs and not sea level rise will be the major determinant of the coastal protection services provided by coral reefs and calls for investments into coral reef conservation to ensure the future protection of tropical coastal communities.

The characteristics and dynamics of wave-driven flow across a platform coral reef in the Red Sea

NASA Astrophysics Data System (ADS)

Lentz, S. J.; Churchill, J. H.; Davis, K. A.; Farrar, J. T.; Pineda, J.; Starczak, V.

2016-02-01

Current dynamics across a platform reef in the Red Sea near Jeddah, Saudi Arabia, are examined using 18 months of current profile, pressure, surface wave, and wind observations. The platform reef is 700 m long, 200 m across with spatial and temporal variations in water depth over the reef ranging from 0.6 to 1.6 m. Surface waves breaking at the seaward edge of the reef cause a 2-10 cm setup of sea level that drives cross-reef currents of 5-20 cm s-1. Bottom stress is a significant component of the wave setup balance in the surf zone. Over the reef flat, where waves are not breaking, the cross-reef pressure gradient associated with wave setup is balanced by bottom stress. The quadratic drag coefficient for the depth-average flow decreases with increasing water depth from Cda = 0.17 in 0.4 m of water to Cda = 0.03 in 1.2 m of water. The observed dependence of the drag coefficient on water depth is consistent with open-channel flow theory and a hydrodynamic roughness of zo = 0.06 m. A simple one-dimensional model driven by incident surface waves and wind stress accurately reproduces the observed depth-averaged cross-reef currents and a portion of the weaker along-reef currents over the focus reef and two other Red Sea platform reefs. The model indicates the cross-reef current is wave forced and the along-reef current is partially wind forced.

Evidence from aerial photography of structural loss of coral reefs at Barbados, West Indies

NASA Astrophysics Data System (ADS)

Lewis, J.

2002-04-01

In response to concerns about widespread degradation of coral reefs at Barbados, West Indies, over the past two decades, maps and planimetric areas of 20 fringing coral reefs were estimated from enlargements of aerial photographs of the island, using geographic information system analysis. There were statistically significant reductions in reef areas over a 40-year period from 1950 to 1991. Areal losses exceeding measurement and boundary interpretation errors of 10% were detected on eight of the 20 reefs. Ground validation carried out by divers on six of the reefs confirmed physical losses of reef structures and accumulation of rubble and sand substrata at sites where substantial planimetric area loss was detected on aerial photographs. Structural losses occurred along the "spur and groove" system of the reef-seaward edge, within deep channels or breaches in the reef front, and along the flanks or ends of reefs. The location and nature of the observed losses suggest that storm damage and seasonal alterations in beach morphology are the two most important factors contributing to geomorphological structural loss of the reefs.

Fishing down the largest coral reef fish species.

PubMed

Fenner, Douglas

2014-07-15

Studies on remote, uninhabited, near-pristine reefs have revealed surprisingly large populations of large reef fish. Locations such as the northwestern Hawaiian Islands, northern Marianas Islands, Line Islands, U.S. remote Pacific Islands, Cocos-Keeling Atoll and Chagos archipelago have much higher reef fish biomass than islands and reefs near people. Much of the high biomass of most remote reef fish communities lies in the largest species, such as sharks, bumphead parrots, giant trevally, and humphead wrasse. Some, such as sharks and giant trevally, are apex predators, but others such as bumphead parrots and humphead wrasse, are not. At many locations, decreases in large reef fish species have been attributed to fishing. Fishing is well known to remove the largest fish first, and a quantitative measure of vulnerability to fishing indicates that large reef fish species are much more vulnerable to fishing than small fish. The removal of large reef fish by fishing parallels the extinction of terrestrial megafauna by early humans. However large reef fish have great value for various ecological roles and for reef tourism. Copyright © 2014 Elsevier Ltd. All rights reserved.

Initial colonization, erosion and accretion of coral substrate

NASA Astrophysics Data System (ADS)

Davies, Peter J.; Hutchings, Patricia A.

1983-08-01

Blocks cut from Porites lutea were laid on the fore reef slope, reef flat and a lagoonal patch reef at Lizard Island, in the Northern Great Barrier Reef, and replicates removed from each environment at intervals of three months over a period of one and a half years. Variations in bioeroders and bioaccretors were noted. Microfaunas are far more numerous than macrofaunas as block colonizers; the principal borers are polychaete worms, whereas encrusters are molluscs, bryozoans, serpulids and solitary corals. The reef slope is more readily colonised by microfauna pioneer communities than are the other areas. All the environments exhibit a change from cirratulids to either sabellids or spionids (polydorids) over the length of the experiment. Accretion occurred on all blocks during the experiment, with significant differences detectable between environments; both reef slope and reef flat blocks showed weight increases of 9 10% whereas blocks from the patch reef showed increases of 15%. Annual erosion rates produced by polychaete worms are 0.694 kg m-2 year-1 (reef front), 0.843 kg m-2 year-1 (reef flat) and 1.788 kg m-2 year-1 (patch reef).

43 CFR Appendix II to Part 11 - Format for Data Inputs and Modifications to the NRDAM/CME

Code of Federal Regulations, 2012 CFR

2012-10-01

... not contain vegetation (e.g., wetland, seagrass, or kelp) or invertebrate reef (e.g., coral reef) and... invertebrate reef (e.g., coral reef) and is classified as “seaward” in Table 6.2, Volume I of the NRDAM/CME... invertebrate reef (e.g., coral reef). Tidal current—currents caused by alternating rise and fall of the sea...

Bleaching drives collapse in reef carbonate budgets and reef growth potential on southern Maldives reefs

NASA Astrophysics Data System (ADS)

Perry, C. T.; Morgan, K. M.

2017-01-01

Sea-surface temperature (SST) warming events, which are projected to increase in frequency and intensity with climate change, represent major threats to coral reefs. How these events impact reef carbonate budgets, and thus the capacity of reefs to sustain vertical growth under rising sea levels, remains poorly quantified. Here we quantify the magnitude of changes that followed the ENSO-induced SST warming that affected the Indian Ocean region in mid-2016. Resultant coral bleaching caused an average 75% reduction in coral cover (present mean 6.2%). Most critically we report major declines in shallow fore-reef carbonate budgets, these shifting from strongly net positive (mean 5.92 G, where G = kg CaCO3 m-2 yr-1) to strongly net negative (mean -2.96 G). These changes have driven major reductions in reef growth potential, which have declined from an average 4.2 to -0.4 mm yr-1. Thus these shallow fore-reef habitats are now in a phase of net erosion. Based on past bleaching recovery trajectories, and predicted increases in bleaching frequency, we predict a prolonged period of suppressed budget and reef growth states. This will limit reef capacity to track IPCC projections of sea-level rise, thus limiting the natural breakwater capacity of these reefs and threatening reef island stability.

Bleaching drives collapse in reef carbonate budgets and reef growth potential on southern Maldives reefs.

PubMed

Perry, C T; Morgan, K M

2017-01-13

Sea-surface temperature (SST) warming events, which are projected to increase in frequency and intensity with climate change, represent major threats to coral reefs. How these events impact reef carbonate budgets, and thus the capacity of reefs to sustain vertical growth under rising sea levels, remains poorly quantified. Here we quantify the magnitude of changes that followed the ENSO-induced SST warming that affected the Indian Ocean region in mid-2016. Resultant coral bleaching caused an average 75% reduction in coral cover (present mean 6.2%). Most critically we report major declines in shallow fore-reef carbonate budgets, these shifting from strongly net positive (mean 5.92 G, where G = kg CaCO 3 m -2 yr -1 ) to strongly net negative (mean -2.96 G). These changes have driven major reductions in reef growth potential, which have declined from an average 4.2 to -0.4 mm yr -1 . Thus these shallow fore-reef habitats are now in a phase of net erosion. Based on past bleaching recovery trajectories, and predicted increases in bleaching frequency, we predict a prolonged period of suppressed budget and reef growth states. This will limit reef capacity to track IPCC projections of sea-level rise, thus limiting the natural breakwater capacity of these reefs and threatening reef island stability.

Bleaching drives collapse in reef carbonate budgets and reef growth potential on southern Maldives reefs

PubMed Central

Perry, C. T.; Morgan, K. M.

2017-01-01

Sea-surface temperature (SST) warming events, which are projected to increase in frequency and intensity with climate change, represent major threats to coral reefs. How these events impact reef carbonate budgets, and thus the capacity of reefs to sustain vertical growth under rising sea levels, remains poorly quantified. Here we quantify the magnitude of changes that followed the ENSO-induced SST warming that affected the Indian Ocean region in mid-2016. Resultant coral bleaching caused an average 75% reduction in coral cover (present mean 6.2%). Most critically we report major declines in shallow fore-reef carbonate budgets, these shifting from strongly net positive (mean 5.92 G, where G = kg CaCO3 m−2 yr−1) to strongly net negative (mean −2.96 G). These changes have driven major reductions in reef growth potential, which have declined from an average 4.2 to −0.4 mm yr−1. Thus these shallow fore-reef habitats are now in a phase of net erosion. Based on past bleaching recovery trajectories, and predicted increases in bleaching frequency, we predict a prolonged period of suppressed budget and reef growth states. This will limit reef capacity to track IPCC projections of sea-level rise, thus limiting the natural breakwater capacity of these reefs and threatening reef island stability. PMID:28084450

Controls on reef development and the terrigenous-carbonate interface on a shallow shelf, Nicaragua (Central America)

NASA Astrophysics Data System (ADS)

Roberts, H. H.; Murray, S. P.

1983-06-01

Marine geology and physical oceanographic data collected during two field projects (˜4 months) on the Caribbean shelf of Nicaragua indicate a surprising dominance of carbonate deposition and reef growth on a shelf that is receiving an abnormally large volume of terrigenous sediments. High rainfall rates (˜400 500 cm/year), coupled with a warm tropical climate, encourage rapid denudation of the country's central volcanic highland and transport of large volumes of terrigenous sediment and fresh water to the coast. Estimates suggest that three times more fresh water and fifteen times more sediment are introduced per unit length of coastline than on the east coast of the United States. Distribution of the terrigenous facies, development of carbonate sediment suites, and the location and quality of viable reefs are strongly controlled by the dynamic interaction near the coasts of highly turbid fresh to brackish water effluents from thirteen rivers with clear marine waters of the shelf. Oceanic water from the central Caribbean drift current intersects the shelf and moves slowely in a dominant northwest direction toward the Yucatan Channel. A sluggish secondary gyre moves to the south toward Costa Rica. In contrast, the turbid coastal water is deflected to the south in response to density gradients, surface water slopes, and momentum supplied by the steady northeast trade winds. A distinct two-layered flow is commonly present in the sediment-rich coastal boundary zone, which is typically 10 20 km wide. The low-salinity upper layer is frictionally uncoupled from the ambient shelf water and therefore can expand out of the normally coherent coastal boundary zone during periods of abnormal flooding or times when instability is introduced into the northeast trades. Reef distribution, abruptness of the terrigenous-carbonate interface, and general shelf morphology reflect the long-term dynamic structure of the shelf waters. A smooth-bottomed ramp of siliciclastic sands to silts and clays mantles the inner shelf floor in a linear belt paralleling the coast. This belt generally corresponds to the western flank of the coastal boundary zone. Occurrence of reefs is generally confined to areas outside this zone. Terrigenous clays and silts of the inner shelf are abruptly (<20 km from the coast) replaced by Halimeda-rich sediment of the middle and outer shelf. Within the carbonate facies belt, reef complexes thrive as small, isolated masses; large, reef-capped platforms; reef fringes around islands; and shelfedge structures with vertical relief that can exceed 25 m. In general, the frequency and proliferation of reefs increase away from the turbid coastal boundary layer and toward the cooler and saltier water that upwells at the shelf margin.

Kenya.

PubMed

Obura, D O

2001-12-01

The Kenya coast is bathed by the northward-flowing warm waters of the East Africa Coastal Current, located between latitudes 1 and 5 degrees S. With a narrow continental shelf, the coastal marine environments are dominated by coral reefs, seagrass beds and mangroves, with large expanses of sandy substrates where river inputs from Kenya's two largest rivers, the Tana and Athi rivers, prevent the growth of coral reefs. The northern part of the coast is seasonally influenced by upwelling waters of the Somali Current, resulting in lower water temperatures for part of the year. The coast is made up of raised Pleistocene reefs on coastal plains and hills of sedimentary origin, which support native habitats dominated by scrub bush and remnant pockets of the forests that used to cover East Africa and the Congo basin. The marine environment is characterized by warm tropical conditions varying at the surface between 25 degrees C and 31 degrees C during the year, stable salinity regimes, and moderately high nutrient levels from terrestrial runoff and groundwater. The semi-diurnal tidal regime varies from 1.5 to 4 m amplitude from neap to spring tides, creating extensive intertidal platform and rocky-shore communities exposed twice-daily during low tides. Fringing reef crests dominate the whole southern coast and parts of the northern coast towards Somalia, forming a natural barrier to the wave energy from the ocean. Coral reefs form the dominant ecosystem along the majority of the Kenya coast, creating habitats for seagrasses and mangroves in the lagoons and creeks protected by the reef crests. Kenya's marine environment faces a number of threats from the growing coastal human population estimated at just under three million in 2000. Extraction of fish and other resources from the narrow continental shelf, coral reef and mangrove ecosystems increases each year with inadequate monitoring and management structures to protect the resource bases. Coastal development in urban and tourist centers proceeds with little regard for environmental and social impacts. With a faltering economy, industrial development in Mombasa proceeds with few checks on pollution and other impacts. In 1998 Kenya's coral reefs suffered 50-80% mortality from the El Niño-related coral bleaching event that affected the entire Indian Ocean. The institutional, human resource and legal infrastructure for managing the coastal environment has in the past been low, however these are rapidly improving with the revitalization of national institutions and the passing in 1999 of an Environment Act. Marine Protected Areas are the key tool currently used in management of marine ecosystems, and focus principally on coral reefs and biodiversity protection. New initiatives are underway to improve application of fisheries regulations, and to use Integrated Coastal Area Management (ICAM) as a framework for protecting marine and coastal environments.

Characterization of genome-wide microsatellite markers in rabbitfishes, an important resource for artisanal fisheries in the Indo-West Pacific.

PubMed

Kiper, Ilkser Erdem; Bloomer, Paulette; Borsa, Philippe; Hoareau, Thierry Bernard

2018-02-01

Rabbitfishes are reef-associated fishes that support local fisheries throughout the Indo-West Pacific region. Sound management of the resource requires the development of molecular tools for appropriate stock delimitation of the different species in the family. Microsatellite markers were developed for the cordonnier, Siganus sutor, and their potential for cross-amplification was investigated in 12 congeneric species. A library of 792 repeat-containing sequences was built. Nineteen sets of newly developed primers, and 14 universal finfish microsatellites were tested in S. sutor. Amplification success of the 19 Siganus-specific markers ranged from 32 to 79% in the 12 other Siganus species, slightly decreasing when the genetic distance of the target species to S. sutor increased. Seventeen of these markers were polymorphic in S. sutor and were further assayed in S. luridus, S. rivulatus, and S. spinus, of which respectively 9, 10 and 8 were polymorphic. Statistical power analysis and an analysis of molecular variance showed that subtle genetic differentiation can be detected using these markers, highlighting their utility for the study of genetic diversity and population genetic structure in rabbitfishes.

Artificial reefs and marine protected areas: a study in willingness to pay to access Folkestone Marine Reserve, Barbados, West Indies

PubMed Central

Wheeler, Philip M.; Johnson, Magnus L.

2016-01-01

Artificial reefs in marine protected areas provide additional habitat for biodiversity viewing, and therefore may offer an innovative management solution for managing for coral reef recovery and resilience. Marine park user fees can generate revenue to help manage and maintain natural and artificial reefs. Using a stated preference survey, this study investigates the present consumer surplus associated with visitor use of a marine protected area in Barbados. Two hypothetical markets were presented to differentiate between respondents use values of either: (a) natural reefs within the marine reserve or (b) artificial reef habitat for recreational enhancement. Information was also collected on visitors’ perceptions of artificial reefs, reef material preferences and reef conservation awareness. From a sample of 250 visitors on snorkel trips, we estimate a mean willingness to pay of US$18.33 (median—US$15) for natural reef use and a mean value of US$17.58 (median—US$12.50) for artificial reef use. The number of marine species viewed, age of respondent, familiarity with the Folkestone Marine Reserve and level of environmental concern were statistically significant in influencing willingness to pay. Regression analyses indicate visitors are willing to pay a significant amount to view marine life, especially turtles. Our results suggest that user fees could provide a considerable source of income to aid reef conservation in Barbados. In addition, the substantial use value reported for artificial reefs indicates a reef substitution policy may be supported by visitors to the Folkestone Marine Reserve. We discuss our findings and highlight directions for future research that include the need to collect data to establish visitors’ non-use values to fund reef management. PMID:27547521

Using coral disease prevalence to assess the effects of concentrating tourism activities on offshore reefs in a tropical marine park.

PubMed

Lamb, Joleah B; Willis, Bette L

2011-10-01

Concentrating tourism activities can be an effective way to closely manage high-use parks and minimize the extent of the effects of visitors on plants and animals, although considerable investment in permanent tourism facilities may be required. On coral reefs, a variety of human-related disturbances have been associated with elevated levels of coral disease, but the effects of reef-based tourist facilities (e.g., permanent offshore visitor platforms) on coral health have not been assessed. In partnership with reef managers and the tourism industry, we tested the effectiveness of concentrating tourism activities as a strategy for managing tourism on coral reefs. We compared prevalence of brown band disease, white syndromes, black band disease, skeletal eroding band, and growth anomalies among reefs with and without permanent tourism platforms within the Great Barrier Reef Marine Park. Coral diseases were 15 times more prevalent at reefs with offshore tourism platforms than at nearby reefs without platforms. The maximum prevalence and maximum number of cases of each disease type were recorded at reefs with permanently moored tourism platforms. Diseases affected 10 coral genera from 7 families at reefs with platforms and 4 coral genera from 3 families at reefs without platforms. The greatest number of disease cases occurred within the spatially dominant acroporid corals, which exhibited 18-fold greater disease prevalence at reefs with platforms than at reefs without platforms. Neither the percent cover of acroporids nor overall coral cover differed significantly between reefs with and without platforms, which suggests that neither factor was responsible for the elevated levels of disease. Identifying how tourism activities and platforms facilitate coral disease in marine parks will help ensure ongoing conservation of coral assemblages and tourism. ©2011 Society for Conservation Biology.

Species-area relationships in coral communities: evaluating mechanisms for a commonly observed pattern

NASA Astrophysics Data System (ADS)

Huntington, B. E.; Lirman, D.

2012-12-01

Landscape-scale attributes of patch size, spatial isolation, and topographic complexity are known to influence diversity and abundance in terrestrial and marine systems, but remain collectively untested for reef-building corals. To investigate the relationship between the coral assemblage and seascape variation in reef habitats, we took advantage of the distinct boundaries, spatial configurations, and topographic complexities among artificial reef patches to overcome the difficulties of manipulating natural reefs. Reef size (m2) was found to be the foremost predictor of coral richness in accordance with species-area relationship predictions. Larger reefs were also found to support significantly higher colony densities, enabling us to reject the null hypothesis of random placement (a sampling artifact) in favor of target area predictions that suggest greater rates of immigration on larger reefs. Unlike the pattern previously documented for reef fishes, topographic complexity was not a significant predictor of any coral assemblage response variable, despite the range of complexity values sampled. Lastly, coral colony density was best explained by both increasing reef size and decreasing reef spatial isolation, a pattern found exclusively among brooding species with shorter larval dispersal distances. We conclude that seascape attributes of reef size and spatial configuration within the seascape can influence the species richness and abundance of the coral community at relatively small spatial scales (<1 km). Specifically, we demonstrate how patterns in the coral communities that have naturally established on these manipulated reefs agree with the target area and island biogeography mechanisms to drive species-area relationships in reef-building corals. Based on the patterns documented in artificial reefs, habitat degradation that results in smaller, more isolated natural reefs may compromise coral diversity.

Benthic foraminifera baseline assemblages from a coastal nearshore reef complex on the central Great Barrier Reef

NASA Astrophysics Data System (ADS)

Johnson, Jamie; Perry, Chris; Smithers, Scott; Morgan, Kyle

2016-04-01

Declining water quality due to river catchment modification since European settlement (c. 1850 A.D.) represents a major threat to the health of coral reefs on Australia's Great Barrier Reef (GBR), particularly for those located in the coastal waters of the GBR's inner-shelf. These nearshore reefs are widely perceived to be most susceptible to declining water quality owing to their close proximity to river point sources. Despite this, nearshore reefs have been relatively poorly studied with the impacts and magnitudes of environmental degradation still remaining unclear. This is largely due to ongoing debates concerning the significance of increased sediment yields against naturally high background sedimentary regimes. Benthic foraminifera are increasingly used as tools for monitoring environmental and ecological change on coral reefs. On the GBR, the majority of studies have focussed on the spatial distributions of contemporary benthic foraminiferal assemblages. While baseline assemblages from other environments (e.g. inshore reefs and mangroves) have been described, very few records exist for nearshore reefs. Here, we present preliminary results from the first palaeoecological study of foraminiferal assemblages of nearshore reefs on the central GBR. Cores were recovered from the nearshore reef complex at Paluma Shoals using percussion techniques. Recovery was 100%, capturing the entire Holocene reef sequence of the selected reef structures. Radiocarbon dating and subsequent age-depth modelling techniques were used to identify reef sequences pre-dating European settlement. Benthic foraminifera assemblages were reconstructed from the identified sequences to establish pre-European ecological baselines with the aim of providing a record of foraminiferal distribution during vertical reef accretion and against which contemporary ecological change may be assessed.

The engine of the reef: photobiology of the coral–algal symbiosis

PubMed Central

Roth, Melissa S.

2014-01-01

Coral reef ecosystems thrive in tropical oligotrophic oceans because of the relationship between corals and endosymbiotic dinoflagellate algae called Symbiodinium. Symbiodinium convert sunlight and carbon dioxide into organic carbon and oxygen to fuel coral growth and calcification, creating habitat for these diverse and productive ecosystems. Light is thus a key regulating factor shaping the productivity, physiology, and ecology of the coral holobiont. Similar to all oxygenic photoautotrophs, Symbiodinium must safely harvest sunlight for photosynthesis and dissipate excess energy to prevent oxidative stress. Oxidative stress is caused by environmental stressors such as those associated with global climate change, and ultimately leads to breakdown of the coral–algal symbiosis known as coral bleaching. Recently, large-scale coral bleaching events have become pervasive and frequent threatening and endangering coral reefs. Because the coral–algal symbiosis is the biological engine producing the reef, the future of coral reef ecosystems depends on the ecophysiology of the symbiosis. This review examines the photobiology of the coral–algal symbiosis with particular focus on the photophysiological responses and timescales of corals and Symbiodinium. Additionally, this review summarizes the light environment and its dynamics, the vulnerability of the symbiosis to oxidative stress, the abiotic and biotic factors influencing photosynthesis, the diversity of the coral–algal symbiosis, and recent advances in the field. Studies integrating physiology with the developing “omics” fields will provide new insights into the coral–algal symbiosis. Greater physiological and ecological understanding of the coral–algal symbiosis is needed for protection and conservation of coral reefs. PMID:25202301

Early-mid-Cretaceous evolution in Tethyan reef communities and sea level

DOE Office of Scientific and Technical Information (OSTI.GOV)

Scott, R.W.

1988-01-01

The replacement of corals by rudists in Early Cretaceous reefal communities spanned a 30-m.y. period when sea level rose and drowned continental shelves. During this time corals formed communities in the deeper parts of reefs and rudists occupied the shallow, high-energy habitats. By Aptian time rudists dominated reefs that fringed interior shelf basins and corals formed reefs with rudists on the outer shelf margins. By late Albian coral communities had virtually disappeared, presumably because of complex environmental changes and cycles of organic productivity. Two important events of eustatic sea level rise are represented by unconformities separating carbonate depositional sequences onmore » the Arabian platform that correlate with sequence boundaries on the Gulf Coast platform. Graphic correlation techniques test the synchroneity of these events. A composite standard time scale dates these sea level rises at 115.8 Ma and 94.6 Ma; a third, intra-Albian event at 104.3 Ma is present in many places and may also be eustatic. Associated with these sea level rises were apparent changes in ocean water chemistry as evidenced by changes in isotopes and trace elements, where diagenetic effects can be discounted. During this time the climate became more humid and atmospheric CO/sub 2/ increased. The concomitant environmental changes in the oceanic conditions presumably stressed the deeper coral communities on reefs. The emergence of rudists as reef contributors had a profound effect on Late Cretaceous depositional conditions and the development of hydrocarbon reservoirs.« less

Early-mid-Cretaceous evolution in Tethyan reef communities and sea level

DOE Office of Scientific and Technical Information (OSTI.GOV)

Scott, R.W.

1988-02-01

The replacement of corals by rudists in Early Cretaceous reefal communities spanned a 30-m.y. period when sea level rose and drowned continental shelves. During this time corals formed communities in the deeper parts of reefs and rudists occupied the shallow, high-energy habitats. By Aptian time rudists dominated reefs that fringed interior shelf basins and corals formed reefs with rudists on the outer shelf margins. By late Albian coral communities had virtually disappeared, presumably because of complex environmental changes and cycles of organic productivity. Two important events of eustatic sea level rise are represented by unconformities separating carbonate depositional sequences onmore » the Arabian platform that correlate with sequence boundaries on the Gulf Coast platform. Graphic correlation techniques test the synchroneity of these events. A composite standard time scale dates these sea level rises at 115.8 Ma and 94.6 Ma; a third, intra-Albian event at 104.3 Ma is present in many places and may also be eustatic. Associated with these sea level rises were apparent changes in ocean water chemistry as evidenced by changes in isotopes and trace elements, where diagenetic effects can be discounted. During this time the climate became more humid and atmospheric CO/sub 2/ increased. The concomitant environmental changes in the oceanic conditions presumably stressed the deeper coral communities on reefs. The emergence of rudists as reef contributors had a profound effect on Late Cretaceous depositional conditions and the development of hydrocarbon reservoirs.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hurst, J.M.; Lapointe, P.A.; Nyein, U.K.

Three Oligocene-Miocene carbonate depositional morphologies commonly occur: shoals, reefs, and isolated platforms. Lenticular shoals (0-25 m thick, 1 km long) are stacked and intercalated with siliciclastic mudstones. Facies include trough/festoon cross-bedded benthic foram grainstones passing laterally and vertically into red-algal dominated graded-laminated beds, bioturbated silty calcareous mudstone, and siliciclastic sandy foram wackestone and packstone. The morphology and facies are hydrodynamically controlled. Pinnacle reefs (1-2 km[sup 2]) dominated by red-algae, branching corals, and large mollusks occur on structure or aligned within shelf mudstones. The latter location reflects low sedimentation rates and hydrodynamic control. Isolated platforms (up to 150 km[sup 2]) aremore » environmental mosaics of marginal path reefs and shoals, interior lagoons, and islands plus marginal slopes. Facies are similar to shoals and reefs except there are more muddy fabrics and less high-energy facies. They develop on tilted fault blocks or eroded submerged arcs in the offshore Gulf of Martaban, distal to the ancestral Irrawaddy delta.« less

Baseline study of the spatio-temporal patterns of reef fish assemblages prior to a major mining project in New Caledonia (South Pacific).

PubMed

Chabanet, Pascale; Guillemot, Nicolas; Kulbicki, Michel; Vigliola, Laurent; Sarramegna, Sébastien

2010-01-01

From 2008 onwards, the coral reefs of Koné (New Caledonia) will be subjected to a major anthropogenic perturbation linked to development of a nickel mine. Dredging and sediment runoff may directly damage the reef environment whereas job creation should generate a large demographic increase and thus a rise in fishing activities. This study analyzed reef fish assemblages between 2002 and 2007 with a focus on spatio-temporal variability. Our results indicate strong spatial structure of fish assemblages through time. Total species richness, density and biomass were highly variable between years but temporal variations were consistent among biotopes. A remarkable spatio-temporal stability was observed for trophic (mean 4.6% piscivores, 53.1% carnivores, 30.8% herbivores and 11.4% planktivores) and home range structures of species abundance contributions. These results are discussed and compared with others sites of the South Pacific. For monitoring perspectives, some indicators related to expected disturbances are proposed. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

Linking coral river runoff proxies with climate variability, hydrology and land-use in Madagascar catchments.

PubMed

Maina, Joseph; de Moel, Hans; Vermaat, Jan E; Bruggemann, J Henrich; Guillaume, Mireille M M; Grove, Craig A; Madin, Joshua S; Mertz-Kraus, Regina; Zinke, Jens

2012-10-01

Understanding the linkages between coastal watersheds and adjacent coral reefs is expected to lead to better coral reef conservation strategies. Our study aims to examine the main predictors of environmental proxies recorded in near shore corals and therefore how linked near shore reefs are to the catchment physical processes. To achieve these, we developed models to simulate hydrology of two watersheds in Madagascar. We examined relationships between environmental proxies derived from massive Porites spp. coral cores (spectral luminescence and barium/calcium ratios), and corresponding time-series (1950-2006) data of hydrology, climate, land use and human population growth. Results suggest regional differences in the main environmental drivers of reef sedimentation: on annual time-scales, precipitation, river flow and sediment load explained the variability in coral proxies of river discharge for the northeast region, while El Niño-Southern Oscillation (ENSO) and temperature (air and sea surface) were the best predictors in the southwest region. Copyright © 2012 Elsevier Ltd. All rights reserved.

From carbonate platform to euxinic sea - the collapse of an Early/Middle Devonian reef, Cantabrian Mountains (Spain)

NASA Astrophysics Data System (ADS)

Loevezijn, Gerard B. S. van; Raven, J. G. M.

2017-12-01

The Santa Lucía Formation represents the major phase in Devonian reef development of the Cantabrian Zone (Cantabrian Mountains, northwest Spain). In the present study the transition from the carbonate platform deposits of the Santa Lucía Formation to the overlying euxinic basinal deposits of the Huergas Formation is described. These transitional strata are connected to the Basal Choteč Event and represent a condensed sedimentation of micritic dark-grey and black limestones with an upward increase of dark shale intercalations with iron mineralisation surfaces and storm-induced brachiopod coquinas. The transitional beds are grouped into a new unit, the Cabornera Bed, which consists of limestone, limestone-shale and shale facies associations, representing a sediment-starved euxinic offshore area just below the storm wave base. Four stages in reef decline can be recognised: a reef stage, an oxygen-depleted, nutrient-rich stage, a siliciclastic-influx stage and a pelagic-siliciclastic stage. Additional geochemical and geophysical investigations are needed to verify the results presented herein.

Evidence for coral island formation during rising sea level in the central Pacific Ocean

NASA Astrophysics Data System (ADS)

Kench, Paul S.; Owen, Susan D.; Ford, Murray R.

2014-02-01

The timing and evolution of Jabat Island, Marshall Islands, was investigated using morphostratigraphic analysis and radiometric dating. Results show the first evidence of island building in the Pacific during latter stages of Holocene sea level rise. A three-phase model of development of Jabat is presented. Initially, rapid accumulation of coarse sediments on Jabat occurred 4800-4000 years B.P. across a reef flat higher than present level, as sea level continued to rise. During the highstand, island margins and particularly the western margin accreted vertically to 2.5-3.0 m above contemporary ridge elevations. This accumulation phase was dominated by sand-size sediments. Phase three involved deposition of gravel ridges on the northern reef, as sea level fell to present position. Jabat has remained geomorphically stable for the past 2000 years. Findings suggest reef platforms may accommodate the oldest reef islands in atoll systems, which may have profound implications for questions of prehistoric migration through Pacific archipelagos.

A unified model explains commonness and rarity on coral reefs.

PubMed

Connolly, Sean R; Hughes, Terry P; Bellwood, David R

2017-04-01

Abundance patterns in ecological communities have important implications for biodiversity maintenance and ecosystem functioning. However, ecological theory has been largely unsuccessful at capturing multiple macroecological abundance patterns simultaneously. Here, we propose a parsimonious model that unifies widespread ecological relationships involving local aggregation, species-abundance distributions, and species associations, and we test this model against the metacommunity structure of reef-building corals and coral reef fishes across the western and central Pacific. For both corals and fishes, the unified model simultaneously captures extremely well local species-abundance distributions, interspecific variation in the strength of spatial aggregation, patterns of community similarity, species accumulation, and regional species richness, performing far better than alternative models also examined here and in previous work on coral reefs. Our approach contributes to the development of synthetic theory for large-scale patterns of community structure in nature, and to addressing ongoing challenges in biodiversity conservation at macroecological scales. © 2017 The Authors. Ecology Letters published by CNRS and John Wiley & Sons Ltd.

Carbon isotopic evidence for photosynthesis in Early Cambrian oceans

NASA Astrophysics Data System (ADS)

Surge, Donna M.; Savarese, Michael; Dodd, J. Robert; Lohmann, Kyger C.

1997-06-01

Were the first metazoan reefs ecologically similar to modern tropical reefs, enabling them to persist under oligotrophic conditions? We tested the hypothesis of ecological similarity by employing a geochemical approach. Petrography, cathodoluminescence, trace elements, and stable isotope analyses of primary precipitates of the Lower Cambrian Ajax Limestone, South Australia, indicate preservation of original C isotopic composition. All primary carbonate components exhibit C isotopic values similar to the composition of inorganically precipitated fibrous marine cements, suggesting that archaeocyaths and the calcimicrobe Epiphyton precipitated skeletal carbonate in equilibrium with ambient seawater in the absence of vital effects. Such data do not support the contention that archaeocyaths possessed photosymbionts. However, a +0.55‰ shift in δ13C occurs in reefs developed under shallower-water conditions relative to deeper reefs. This shift suggests the stratification of primary production in Early Cambrian oceans. The pattern is similar to that seen in the modern ocean, whereby significant photosynthesis modulates the C isotopic composition of the photic zone.

Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales.

PubMed

Zaneveld, Jesse R; Burkepile, Deron E; Shantz, Andrew A; Pritchard, Catharine E; McMinds, Ryan; Payet, Jérôme P; Welsh, Rory; Correa, Adrienne M S; Lemoine, Nathan P; Rosales, Stephanie; Fuchs, Corinne; Maynard, Jeffrey A; Thurber, Rebecca Vega

2016-06-07

Losses of corals worldwide emphasize the need to understand what drives reef decline. Stressors such as overfishing and nutrient pollution may reduce resilience of coral reefs by increasing coral-algal competition and reducing coral recruitment, growth and survivorship. Such effects may themselves develop via several mechanisms, including disruption of coral microbiomes. Here we report the results of a 3-year field experiment simulating overfishing and nutrient pollution. These stressors increase turf and macroalgal cover, destabilizing microbiomes, elevating putative pathogen loads, increasing disease more than twofold and increasing mortality up to eightfold. Above-average temperatures exacerbate these effects, further disrupting microbiomes of unhealthy corals and concentrating 80% of mortality in the warmest seasons. Surprisingly, nutrients also increase bacterial opportunism and mortality in corals bitten by parrotfish, turning normal trophic interactions deadly for corals. Thus, overfishing and nutrient pollution impact reefs down to microbial scales, killing corals by sensitizing them to predation, above-average temperatures and bacterial opportunism.

Overfishing and nutrient pollution interact with temperature to disrupt coral reefs down to microbial scales

PubMed Central

Zaneveld, Jesse R.; Burkepile, Deron E.; Shantz, Andrew A.; Pritchard, Catharine E.; McMinds, Ryan; Payet, Jérôme P.; Welsh, Rory; Correa, Adrienne M. S.; Lemoine, Nathan P.; Rosales, Stephanie; Fuchs, Corinne; Maynard, Jeffrey A.; Thurber, Rebecca Vega

2016-01-01

Losses of corals worldwide emphasize the need to understand what drives reef decline. Stressors such as overfishing and nutrient pollution may reduce resilience of coral reefs by increasing coral–algal competition and reducing coral recruitment, growth and survivorship. Such effects may themselves develop via several mechanisms, including disruption of coral microbiomes. Here we report the results of a 3-year field experiment simulating overfishing and nutrient pollution. These stressors increase turf and macroalgal cover, destabilizing microbiomes, elevating putative pathogen loads, increasing disease more than twofold and increasing mortality up to eightfold. Above-average temperatures exacerbate these effects, further disrupting microbiomes of unhealthy corals and concentrating 80% of mortality in the warmest seasons. Surprisingly, nutrients also increase bacterial opportunism and mortality in corals bitten by parrotfish, turning normal trophic interactions deadly for corals. Thus, overfishing and nutrient pollution impact reefs down to microbial scales, killing corals by sensitizing them to predation, above-average temperatures and bacterial opportunism. PMID:27270557

Diversity of culturable yeasts associated with zoanthids from Brazilian reef and its relation with anthropogenic disturbance.

PubMed

Paulino, Gustavo Vasconcelos Bastos; Félix, Ciro Ramon; Broetto, Leonardo; Landell, Melissa Fontes

2017-10-15

Some of the main threats to coral reefs come from human actions on marine environment, such as tourism, overfishing and pollution from urban development. While several studies have demonstrated an association between bacteria and corals, demonstrating how these communities react to different anthropogenic stressors, yeast communities associated with corals have received far less attention from researchers. The aim of this work was therefore to describe cultivable yeasts associated with three coral species and to evaluate the influence of sewage discharge on yeasts community. We obtained 130 isolates, mostly belonging to phylum Ascomycota and many of them had previously been isolated from human samples or are considered pathogens. The mycobiota was more similar among corals collected from the same reef, indicating that the composition of reef yeast community is more influenced by environmental conditions than host species. We suggest further studies to elucidate which factors are most influential on the composition of the coral-associated yeast community. Copyright © 2017 Elsevier Ltd. All rights reserved.

Identifying zooplankton community changes between shallow and upper-mesophotic reefs on the Mesoamerican Barrier Reef, Caribbean.

PubMed

Andradi-Brown, Dominic A; Head, Catherine E I; Exton, Dan A; Hunt, Christina L; Hendrix, Alicia; Gress, Erika; Rogers, Alex D

2017-01-01

Mesophotic coral ecosystems (MCEs, reefs 30-150 m) are understudied, yet the limited research conducted has been biased towards large sessile taxa, such as scleractinian corals and sponges, or mobile taxa such as fishes. Here we investigate zooplankton communities on shallow reefs and MCEs around Utila on the southern Mesoamerican Barrier Reef using planktonic light traps. Zooplankton samples were sorted into broad taxonomic groups. Our results indicate similar taxonomic zooplankton richness and overall biomass between shallow reefs and MCEs. However, the abundance of larger bodied (>2 mm) zooplanktonic groups, including decapod crab zoea, mysid shrimps and peracarid crustaceans, was higher on MCEs than shallow reefs. Our findings highlight the importance of considering zooplankton when identifying broader reef community shifts across the shallow reef to MCE depth gradient.

Climate change impacts on coral reefs: synergies with local effects, possibilities for acclimation, and management implications.

PubMed

Ateweberhan, Mebrahtu; Feary, David A; Keshavmurthy, Shashank; Chen, Allen; Schleyer, Michael H; Sheppard, Charles R C

2013-09-30

Most reviews concerning the impact of climate change on coral reefs discuss independent effects of warming or ocean acidification. However, the interactions between these, and between these and direct local stressors are less well addressed. This review underlines that coral bleaching, acidification, and diseases are expected to interact synergistically, and will negatively influence survival, growth, reproduction, larval development, settlement, and post-settlement development of corals. Interactions with local stress factors such as pollution, sedimentation, and overfishing are further expected to compound effects of climate change. Reduced coral cover and species composition following coral bleaching events affect coral reef fish community structure, with variable outcomes depending on their habitat dependence and trophic specialisation. Ocean acidification itself impacts fish mainly indirectly through disruption of predation- and habitat-associated behavior changes. Zooxanthellate octocorals on reefs are often overlooked but are substantial occupiers of space; these also are highly susceptible to bleaching but because they tend to be more heterotrophic, climate change impacts mainly manifest in terms of changes in species composition and population structure. Non-calcifying macroalgae are expected to respond positively to ocean acidification and promote microbe-induced coral mortality via the release of dissolved compounds, thus intensifying phase-shifts from coral to macroalgal domination. Adaptation of corals to these consequences of CO2 rise through increased tolerance of corals and successful mutualistic associations between corals and zooxanthellae is likely to be insufficient to match the rate and frequency of the projected changes. Impacts are interactive and magnified, and because there is a limited capacity for corals to adapt to climate change, global targets of carbon emission reductions are insufficient for coral reefs, so lower targets should be pursued. Alleviation of most local stress factors such as nutrient discharges, sedimentation, and overfishing is also imperative if sufficient overall resilience of reefs to climate change is to be achieved. Copyright © 2013 Elsevier Ltd. All rights reserved.

Bright spots among the world’s coral reefs

NASA Astrophysics Data System (ADS)

Cinner, Joshua E.; Huchery, Cindy; MacNeil, M. Aaron; Graham, Nicholas A. J.; McClanahan, Tim R.; Maina, Joseph; Maire, Eva; Kittinger, John N.; Hicks, Christina C.; Mora, Camilo; Allison, Edward H.; D'Agata, Stephanie; Hoey, Andrew; Feary, David A.; Crowder, Larry; Williams, Ivor D.; Kulbicki, Michel; Vigliola, Laurent; Wantiez, Laurent; Edgar, Graham; Stuart-Smith, Rick D.; Sandin, Stuart A.; Green, Alison L.; Hardt, Marah J.; Beger, Maria; Friedlander, Alan; Campbell, Stuart J.; Holmes, Katherine E.; Wilson, Shaun K.; Brokovich, Eran; Brooks, Andrew J.; Cruz-Motta, Juan J.; Booth, David J.; Chabanet, Pascale; Gough, Charlie; Tupper, Mark; Ferse, Sebastian C. A.; Sumaila, U. Rashid; Mouillot, David

2016-07-01

Ongoing declines in the structure and function of the world’s coral reefs require novel approaches to sustain these ecosystems and the millions of people who depend on them. A presently unexplored approach that draws on theory and practice in human health and rural development is to systematically identify and learn from the ‘outliers’—places where ecosystems are substantially better (‘bright spots’) or worse (‘dark spots’) than expected, given the environmental conditions and socioeconomic drivers they are exposed to. Here we compile data from more than 2,500 reefs worldwide and develop a Bayesian hierarchical model to generate expectations of how standing stocks of reef fish biomass are related to 18 socioeconomic drivers and environmental conditions. We identify 15 bright spots and 35 dark spots among our global survey of coral reefs, defined as sites that have biomass levels more than two standard deviations from expectations. Importantly, bright spots are not simply comprised of remote areas with low fishing pressure; they include localities where human populations and use of ecosystem resources is high, potentially providing insights into how communities have successfully confronted strong drivers of change. Conversely, dark spots are not necessarily the sites with the lowest absolute biomass and even include some remote, uninhabited locations often considered near pristine. We surveyed local experts about social, institutional, and environmental conditions at these sites to reveal that bright spots are characterized by strong sociocultural institutions such as customary taboos and marine tenure, high levels of local engagement in management, high dependence on marine resources, and beneficial environmental conditions such as deep-water refuges. Alternatively, dark spots are characterized by intensive capture and storage technology and a recent history of environmental shocks. Our results suggest that investments in strengthening fisheries governance, particularly aspects such as participation and property rights, could facilitate innovative conservation actions that help communities defy expectations of global reef degradation.

In-Situ Effects of Simulated Overfishing and Eutrophication on Benthic Coral Reef Algae Growth, Succession, and Composition in the Central Red Sea.

PubMed

Jessen, Christian; Roder, Cornelia; Villa Lizcano, Javier Felipe; Voolstra, Christian R; Wild, Christian

2013-01-01

Overfishing and land-derived eutrophication are major local threats to coral reefs and may affect benthic communities, moving them from coral dominated reefs to algal dominated ones. The Central Red Sea is a highly under-investigated area, where healthy coral reefs are contending against intense coastal development. This in-situ study investigated both the independent and combined effects of manipulated inorganic nutrient enrichment (simulation of eutrophication) and herbivore exclosure (simulation of overfishing) on benthic algae development. Light-exposed and shaded terracotta tiles were positioned at an offshore patch reef close to Thuwal, Saudi Arabia and sampled over a period of 4 months. Findings revealed that nutrient enrichment alone affected neither algal dry mass nor algae-derived C or N production. In contrast, herbivore exclusion significantly increased algal dry mass up to 300-fold, and in conjunction with nutrient enrichment, this total increased to 500-fold. Though the increase in dry mass led to a 7 and 8-fold increase in organic C and N content, respectively, the algal C/N ratio (18±1) was significantly lowered in the combined treatment relative to controls (26±2). Furthermore, exclusion of herbivores significantly increased the relative abundance of filamentous algae on the light-exposed tiles and reduced crustose coralline algae and non-coralline red crusts on the shaded tiles. The combination of the herbivore exclusion and nutrient enrichment treatments pronounced these effects. The results of our study suggest that herbivore reduction, particularly when coupled with nutrient enrichment, favors non-calcifying, filamentous algae growth with high biomass production, which thoroughly outcompetes the encrusting (calcifying) algae that dominates in undisturbed conditions. These results suggest that the healthy reefs of the Central Red Sea may experience rapid shifts in benthic community composition with ensuing effects for biogeochemical cycles if anthropogenic impacts, particularly overfishing, are not controlled.

In-Situ Effects of Simulated Overfishing and Eutrophication on Benthic Coral Reef Algae Growth, Succession, and Composition in the Central Red Sea

PubMed Central

Jessen, Christian; Roder, Cornelia; Villa Lizcano, Javier Felipe; Voolstra, Christian R.; Wild, Christian

2013-01-01

Overfishing and land-derived eutrophication are major local threats to coral reefs and may affect benthic communities, moving them from coral dominated reefs to algal dominated ones. The Central Red Sea is a highly under-investigated area, where healthy coral reefs are contending against intense coastal development. This in-situ study investigated both the independent and combined effects of manipulated inorganic nutrient enrichment (simulation of eutrophication) and herbivore exclosure (simulation of overfishing) on benthic algae development. Light-exposed and shaded terracotta tiles were positioned at an offshore patch reef close to Thuwal, Saudi Arabia and sampled over a period of 4 months. Findings revealed that nutrient enrichment alone affected neither algal dry mass nor algae-derived C or N production. In contrast, herbivore exclusion significantly increased algal dry mass up to 300-fold, and in conjunction with nutrient enrichment, this total increased to 500-fold. Though the increase in dry mass led to a 7 and 8-fold increase in organic C and N content, respectively, the algal C/N ratio (18±1) was significantly lowered in the combined treatment relative to controls (26±2). Furthermore, exclusion of herbivores significantly increased the relative abundance of filamentous algae on the light-exposed tiles and reduced crustose coralline algae and non-coralline red crusts on the shaded tiles. The combination of the herbivore exclusion and nutrient enrichment treatments pronounced these effects. The results of our study suggest that herbivore reduction, particularly when coupled with nutrient enrichment, favors non-calcifying, filamentous algae growth with high biomass production, which thoroughly outcompetes the encrusting (calcifying) algae that dominates in undisturbed conditions. These results suggest that the healthy reefs of the Central Red Sea may experience rapid shifts in benthic community composition with ensuing effects for biogeochemical cycles if anthropogenic impacts, particularly overfishing, are not controlled. PMID:23840570

75 FR 48934 - Coral Reef Conservation Program Implementation Guidelines

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-12

...-01] RIN 0648-ZC19 Coral Reef Conservation Program Implementation Guidelines AGENCY: National Oceanic... Guidelines (Guidelines) for the Coral Reef Conservation Program (CRCP or Program) under the Coral Reef... assistance for coral reef conservation projects under the Act. NOAA revised the Implementation Guidelines for...

Topographic control and accumulation rate of some Holocene coral reefs: south Florida and Dry Tortugas

USGS Publications Warehouse

Shinn, E.A.; Hudson, J.H.; Halley, R.B.; Lidz, B.H.; Taylor, D.L.

1977-01-01

Core drilling and examination of underwater excavation on 6 reef sites in south Florida and Dry Tortugas revealed that underlying topography is the major factor controlling reef morphology. Carbon-14 dating on coral recovered from cores enables calculation of accumulation rates. Accumulation rates were found to range from 0.38 m/1000 years in thin Holocene reefs to as much as 4.85 m/1000 years in thicker buildups. Cementation and alteration of corals were found to be more pronounced in areas of low buildup rates than in areas of rapid accumulation rates. Acropora palmata, generally considered the major reef builder in Florida, was found to be absent in most reefs drilled. At Dry Tortugas, the more than 13-meter thick Holocene reef did not contain A. palmata. The principal reef builders in this outer reef are the same as those which built the Pleistocene Key Largo formation, long considered to be fossilized patch reef complex.

Impact of sea-level rise and coral mortality on the wave dynamics and wave forces on barrier reefs.

PubMed

Baldock, T E; Golshani, A; Callaghan, D P; Saunders, M I; Mumby, P J

2014-06-15

A one-dimensional wave model was used to investigate the reef top wave dynamics across a large suite of idealized reef-lagoon profiles, representing barrier coral reef systems under different sea-level rise (SLR) scenarios. The modeling shows that the impacts of SLR vary spatially and are strongly influenced by the bathymetry of the reef and coral type. A complex response occurs for the wave orbital velocity and forces on corals, such that the changes in the wave dynamics vary reef by reef. Different wave loading regimes on massive and branching corals also leads to contrasting impacts from SLR. For many reef bathymetries, wave orbital velocities increase with SLR and cyclonic wave forces are reduced for certain coral species. These changes may be beneficial to coral health and colony resilience and imply that predicting SLR impacts on coral reefs requires careful consideration of the reef bathymetry and the mix of coral species. Copyright © 2014 Elsevier Ltd. All rights reserved.

Abundance and diversity of anemonefishes and their host sea anemones at two mesophotic sites on the Great Barrier Reef, Australia

NASA Astrophysics Data System (ADS)

Bridge, T.; Scott, A.; Steinberg, D.

2012-12-01

Anemonefishes and their host sea anemones are iconic inhabitants of coral reef ecosystems. While studies have documented their abundance in shallow-water reef habitats in parts of the Indo-Pacific, none have examined these species on mesophotic reefs. In this study, we used autonomous underwater vehicle imagery to examine the abundance and diversity of anemones and anemonefishes at Viper Reef and Hydrographers Passage in the central Great Barrier Reef at depths between 50 and 65 m. A total of 37 host sea anemones (31 Entacmaea quadricolor and 6 Heteractis crispa) and 24 anemonefishes (23 Amphiprion akindynos and 1 A. perideraion) were observed. Densities were highest at Viper Reef, with 8.48 E. quadricolor and A. akindynos per 100 m2 of reef substratum. These results support the hypothesis that mesophotic reefs have many species common to shallow-water coral reefs and that many taxa may occur at depths greater than currently recognised.

Testing the effect of habitat structure and complexity on nekton assemblages using experimental oyster reefs

USGS Publications Warehouse

Humphries, Austin T.; LaPeyre, Megan K.; Kimball, Matthew E.; Rozas, Lawrence P.

2011-01-01

Structurally complex habitats are often associated with more diverse and abundant species assemblages in both aquatic and terrestrial ecosystems. Biogenic reefs formed by the eastern oyster (Crassostrea virginica) are complex in nature and are recognized for their potential habitat value in estuarine systems along the US Atlantic and Gulf of Mexico coasts. Few studies, however, have examined the response of nekton to structural complexity within oyster reefs. We used a quantitative sampling technique to examine how the presence and complexity of experimental oyster reefs influence the abundance, biomass, and distribution of nekton by sampling reefs 4 months and 16 months post-construction. Experimental oyster reefs were colonized immediately by resident fishes and decapod crustaceans, and reefs supported a distinct nekton assemblage compared to mud-bottom habitat. Neither increased reef complexity, nor age of the experimental reef resulted in further changes in nekton assemblages or increases in nekton abundance or diversity. The presence of oyster reefs per se was the most important factor determining nekton usage.

DNA barcode of Acropora hyacinthus of Karimunjawa Archipelago

NASA Astrophysics Data System (ADS)

Wijayanti, D. P.; Indrayanti, E.; Nuryadi, H.; Rintiantono, S. A.; Sabdono, A.

2018-03-01

Karimunjawa is one of the earliest marine parks in Indonesia. Karimunjawa National Park (KNP) was designated as a marine conservation area to conserve marine resources from destructive fishing activities. Scleractinian corals in the genus Acropora are among the most dominant distributed in the KNPs, including the species of Acropora hyacinthus. Here, we present a comprehensive analysis of intra- and interspecific COI variabilities in A. hyacinthus to analyze genetic diversity and to describe the kinship relationship of the coral between 5 localities of the reefs. Genetic marker Cytochrome Oxidase I of the mitochondrial genome DNA (mtDNA) was used to analyze genetic diversity. Reconstruction of phylogenetic tree and genetic diversity were made by using software MEGA 5.05 (Molecular Evolutionary Genetics Analysis). The results indicate corals A. hyacinthus from five localities of Karimunjawa Archipelago are in the high category of genetic diversity. However, the five populations showed a close genetic relationship of kinship. This is likely due to the small size of the population and few numbers of samples that may not represent the population. The results may aid managers of the park in the selection of appropriate propagules sources which can help to restore important data for conservation and sustain coral reef resources.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Saller, A.H.; Schlanger, S.O.

Two wells drilled along the margin of Enewetak Atoll penetrated approximately 1,000 m of upper eocene, Oligocene, and lower Miocene carbonates. STrontium isotope stratigraphy indicates relatively continuous deposition of carbonate from 40 Ma to 20 Ma. Depositional environments show a gradual basinward progradation of facies with slope carbonates passing upward into fore-reef, reef, back-reef, and lagoonal carbonates. Slope strata contain wackestones and packstones with submarine-cemented lithoclasts, coral, coralline algae fragments, benthic rotaline forams, planktonic forams, and echinoderm fragments. Fore-reef strata are dominantly packstones and boundstones containing large pieces of coral, abundant benthic forams, coralline algae fragments, stromatoporoids(.), and minor planktonicmore » forams. Reef and near-reef sediments include coralgal boundstones and grainstones with abundant benthic forams. Halimeda and miliolid forams are common in lagoonward parts of the back reef. Sponge borings, geopetal structures, and fractures are common in reef and fore-reef strata. Lagoonal strata are wackestones and packstones with common mollusks, coral, coralline algae, and benthic forams (rotaline and miliolid). Diagenesis has extensively altered strata near the atoll margin. Aragonite dissolution and calcite cements (radiaxial and cloudy prismatic are abundant in fore-reef, reef, and some back-reef strata). Petrographic and geochemical data indicate arogonite dissolution and calcite cementation in seawater at burial depths of 100 to 300 m. Dolomite occurs in slope and deeply buried reefal carbonates.« less

Evaluating the attractiveness and effectiveness of artificial coral reefs as a recreational ecosystem service.

PubMed

Belhassen, Yaniv; Rousseau, Meghan; Tynyakov, Jenny; Shashar, Nadav

2017-12-01

Artificial reefs are increasingly being used around the globe to attract recreational divers, for both environmental and commercial reasons. This paper examines artificial coral reefs as recreational ecosystem services (RES) by evaluating their attractiveness and effectiveness and by examining divers' attitudes toward them. An online survey targeted at divers in Israel (n = 263) indicated that 35% of the dives in Eilat (a resort city on the shore of the Red Sea) take place at artificial reefs. A second study monitored divers' behavior around the Tamar artificial reef, one of the most popular submerged artificial reefs in Eilat, and juxtaposed it with divers' activities around two adjacent natural reefs. Findings show that the average diver density at the artificial reef was higher than at the two nearby natural knolls and that the artificial reef effectively diverts divers from natural knolls. A third study that examined the attitudes towards natural vs. artificial reefs found that the artificial reefs are considered more appropriate for training, but that divers feel less relaxed around them. By utilizing the RES approach as a framework, the study offers a comprehensive methodology that brings together the aesthetic, behavioral, and attitudinal aspects in terms of which artificial reefs can be evaluated. Copyright © 2017 Elsevier Ltd. All rights reserved.

Catastrophic impact of typhoon waves on coral communities in the Ryukyu Islands under global warming

NASA Astrophysics Data System (ADS)

Hongo, Chuki; Kawamata, Hideki; Goto, Kazuhisa

2012-06-01

Typhoon-generated storm waves generally cause mechanical damage to coral communities on present-day reefs, and the magnitude and extent of damage is predicted to increase in the near future as a result of global warming. Therefore, a comprehensive understanding of potential future scenarios of reef ecosystems is of prime interest. This study assesses the current status of coral communities on Ibaruma reef, Ryukyu Islands, on the basis of field observations, engineering and fluid dynamic models, and calculations of wave motion, and predicts the potential effects of a super-extreme typhoon (incident wave height,H = 20 m; wave period, T = 20 s) on the reef. On the present-day reef, massive corals occur in shallow lagoons and tabular corals occur from the reef crest to the reef slope. The observed distribution of corals, which is frequently attacked by moderate (H = 10 m, T = 10 s) and extreme (H = 10 m, T = 15 s) typhoons, is consistent with the predictions of engineering models. Moreover, this study indicates that if a super-extreme typhoon attacks the reef in the near future, massive corals will survive in the shallow lagoons but tabular corals on the reef crest and reef slope will be severely impacted. The findings imply that super-extreme typhoons will cause a loss of species diversity, as the tabular corals are important reef builders and are critical to the maintenance of reef ecosystems. Consequently, reef restoration is a key approach to maintaining reef ecosystems in the wake of super-extreme typhoons.