The frequency of Th17 cells in the small intestine exhibits a day-night variation dependent on circadian clock activity.

PubMed

Thu Le, Ha Pham; Nakamura, Yuki; Oh-Oka, Kyoko; Ishimaru, Kayoko; Nakajima, Shotaro; Nakao, Atsuhito

2017-08-19

Interleukin-17-producing CD4 + T helper (Th17) cells are a key immune lineage that protects against bacterial and fungal infections at mucosal surfaces. At steady state, Th17 cells are abundant in the small intestinal mucosa of mice. There are several mechanisms for regulating the population of Th17 cells in the small intestine, reflecting the importance of maintaining their numbers in the correct balance. Here we demonstrate the existence of a time-of-day-dependent variation in the frequency of Th17 cells in the lamina propria of the small intestine in wild-type mice, which was not observed in mice with a loss-of-function mutation of the core circadian gene Clock or in mice housed under aberrant light/dark conditions. Consistent with this, expression of CCL20, a chemokine that regulates homeostatic trafficking of Th17 cells to the small intestine, exhibited circadian rhythms in the small intestine of wild-type, but not Clock-mutated, mice. In support of these observations, the magnitude of ovalbumin (OVA)-specific antibody and T-cell responses in mice sensitized with OVA plus cholera toxin, a mucosal Th17 cell-dependent adjuvant, was correlated with daily variations in the proportion of Th17 cells in the small intestine. These results suggest that the proportion of Th17 cells in the small intestine exhibits a day-night variation in association with CCL20 expression, which depends on circadian clock activity. The findings provide novel insight into the regulation of the Th17 cell population in the small intestine at steady state, which may have translational potential for mucosal vaccination strategies. Copyright © 2017 Elsevier Inc. All rights reserved.

Ultrafast transient grating radiation to optical image converter

DOEpatents

Stewart, Richard E; Vernon, Stephen P; Steel, Paul T; Lowry, Mark E

2014-11-04

A high sensitivity transient grating ultrafast radiation to optical image converter is based on a fixed transmission grating adjacent to a semiconductor substrate. X-rays or optical radiation passing through the fixed transmission grating is thereby modulated and produces a small periodic variation of refractive index or transient grating in the semiconductor through carrier induced refractive index shifts. An optical or infrared probe beam tuned just below the semiconductor band gap is reflected off a high reflectivity mirror on the semiconductor so that it double passes therethrough and interacts with the radiation induced phase grating therein. A small portion of the optical beam is diffracted out of the probe beam by the radiation induced transient grating to become the converted signal that is imaged onto a detector.

Three-Dimensional Ultrasonic Imaging Of The Cornea

NASA Technical Reports Server (NTRS)

Heyser, Rrichar C.; Rooney, James A.

1988-01-01

Proposed technique generates pictures of curved surfaces. Object ultrasonically scanned in raster pattern generated by scanning transmitter/receiver. Receiver turned on at frequent intervals to measure depth variations of scanned object. Used for medical diagnoses by giving images of small curved objects as cornea. Adaptable to other types of reflection measurementsystems such as sonar and radar.

Modeling the directional reflectance from complete homogeneous vegetation canopies with various leaf-orientation distributions

NASA Technical Reports Server (NTRS)

Kimes, D. S.

1984-01-01

The directional-reflectance distributions of radiant flux from homogeneous vegetation canopies with greater than 90 percent ground cover are analyzed with a radiative-transfer model. The model assumes that the leaves consist of small finite planes with Lambertian properties. Four theoretical canopies with different leaf-orientation distributions were studied: erectophile, spherical, planophile, and heliotropic canopies. The directional-reflectance distributions from the model closely resemble reflectance distributions measured in the field. The physical scattering mechanisms operating in the model explain the variations observed in the reflectance distributions as a function of leaf-orientation distribution, solar zenith angle, and leaf transmittance and reflectance. The simulated reflectance distribution show unique characteristics for each canopy. The basic understanding of the physical scattering properties of the different canopy geometries gained in this study provide a basis for developing techniques to infer leaf-orientation distributions of vegetation canopies from directional remote-sensing measurements.

Gender variations in the optical properties of skin in murine animal models

NASA Astrophysics Data System (ADS)

Calabro, Katherine; Curtis, Allison; Galarneau, Jean-Rene; Krucker, Thomas; Bigio, Irving J.

2011-01-01

Gender is identified as a significant source of variation in optical reflectance measurements on mouse skin, with variation in the thickness of the dermal layer being the key explanatory variable. For three different mouse strains, the thickness values of the epidermis, dermis, and hypodermis layers, as measured by histology, are correlated to optical reflectance measurements collected with elastic scattering spectroscopy (ESS). In all three strains, males are found to have up to a 50% increase in dermal thickness, resulting in increases of up to 80% in reflectance values and higher observed scattering coefficients, as compared to females. Collagen in the dermis is identified as the primary source of these differences due to its strong scattering nature; increased dermal thickness leads to a greater photon path length through the collagen, as compared to other layers, resulting in a larger scattering signal. A related increase in the observed absorption coefficient in females is also observed. These results emphasize the importance of considering gender during experimental design in studies that involve photon interaction with mouse skin. The results also elucidate the significant impact that relatively small thickness changes can have on observed optical measurements in layered tissue.

Steam injection pilot study in a contaminated fractured limestone (Maine, USA): Modeling and analysis of borehole radar reflection data

USGS Publications Warehouse

Gregoire, C.; Lane, J.W.; Joesten, P.K.

2005-01-01

Steam-enhanced remediation (SER) has been successfully used to remove DNAPL and LNAPL contaminants in porous media. Between August and November 2002, SER was tested in fractured limestone at the former Loring Air Force Base, in Maine, USA. During the SER investigation, the U.S. Geological Survey conducted a series of borehole radar surveys to evaluate the effectiveness of radar methods for monitoring the movement of steam and heat through the fractured limestone. The data were collected before steam injection, 10 days after the beginning of injection, and at the end of injection. In this paper, reflection-mode borehole radar data from wells JBW-7816 and JBW-7817A are presented and discussed. Theoretical modeling was performed to predict the variation of fracture reflectivity owed to heating, to show displacement of water and to assess the effect of SER at the site. Analysis of the radar profile data indicates some variations resulting from heating (increase of continuity of reflectors, attenuation of deeper reflections) but no substantial variation of traveltimes. Spectral content analysis of several individual reflections surrounding the boreholes was used to investigate the replacement of water by steam in the fractures. Observed decrease in radar reflectivity was too small to be explained by a replacement of water by steam, except for two high-amplitude reflectors, which disappeared near the end of the injection; moreover, no change of polarity, consistent with steam replacing water, was observed. The decrease of amplitude was greater for reflectors near well JBW-7817A and is explained by a greater heating around this well.

The effect of skin reflectance on thermal traits in a small heliothermic ectotherm.

PubMed

Matthews, Genevieve; Goulet, Celine T; Delhey, Kaspar; Chapple, David G

2016-08-01

Variation in colour patterning is prevalent among and within species. A number of theories have been proposed in explaining its evolution. Because solar radiation interacts with the pigmentation of the integument causing light to either be reflected or absorbed into the body, thermoregulation has been considered to be a primary selective agent, particularly among ectotherms. Accordingly, the colour-mediated thermoregulatory hypothesis states that darker individuals will heat faster and reach higher thermal equilibria while paler individuals will have the opposite traits. It was further predicted that dark colouration would promote slower cooling rates and higher thermal performance temperatures. To test these hypotheses we quantified the reflectance, selected body temperatures, performance optima, as well as heating and cooling rates of an ectothermic vertebrate, Lampropholis delicata. Our results indicated that colour had no influence on thermal physiology, as all thermal traits were uncorrelated with reflectance. We suggest that crypsis may instead be the stronger selective agent as it may have a more direct impact on fitness. Our study has improved our knowledge of the functional differences among individuals with different colour patterns, and the evolutionary significance of morphological variation within species. Copyright © 2016 Elsevier Ltd. All rights reserved.

An experimental study of the reflection from spherical and flat ended cylindrical targets suitable for fetal Doppler performance assessment.

PubMed

Preston, R C; Bond, A D

1997-01-01

The performance of small-diameter targets suitable for use as oscillating targets for testing the sensitivity of Doppler fetal heartbeat detectors has been systematically studied. Experimental results are presented in the 1.6-3.0 MHz frequency range for the plane-wave reflection loss for a total of 16 targets: spherical balls made of stainless steel; hemispherical-ended rods made of PTFE; and flat-ended rods made of stainless steel, PTFE, polycarbonate, and tungsten carbide. Results show that the fine-structure variation of reflection loss with frequency is greatest in the case of spherical ball targets and least for flat-ended targets. It has been shown that, providing care is taken during manufacture, the reflection loss from a flat-ended target can be predicted using a simple theory based on a plane disc reflector. Tungsten carbide targets consisting of a long rod with a diameter of 1.6 mm tapered down to a cylindrical flat end with a diameter of 0.4, 0.5, and 0.6 mm have been shown to provide reflection losses of between 60 and 40 dB, and to have a smooth variation of reflection loss with frequency. They can also be manufactured in a form that allows no significant interference from the supporting structure and, therefore, are ideal targets to meet the requirements of International Electrotechnical Commission 1266:1995.

Spatial variation in below ground carbon cycling in a pristine peatland, driven by present and past vegetation

NASA Astrophysics Data System (ADS)

Mathijssen, Paul; Knorr, Klaus-Holger; Gałka, Mariusz; Borken, Werner

2017-04-01

Peat carbon cycling is controlled by both large scale factors, such as climate and hydrological setting, and small scale factors, such as microtopography, vegetation, litter quality, and rooting depth. These small scale factors commonly vary within peatlands, causing variation in the carbon balance at different locations within the same site. Understanding the relationship between small scale carbon cycling and vegetation helps us to assess the variation of carbon dynamics of peatlands, because vegetation composition acts as an integrator of factors such as microtopography, hydrology, and nutrient level. Variation in vegetation illustrates spatial variation of these underlying factors. Furthermore, the presence of certain plant species affects carbon cycling directly through litter quality or aeration through root tissues. In order to understand these within-site variations in terms of carbon cycling, we investigated carbon accumulation, decomposition, and biogeochemistry of pore waters along a transect of peat cores with changing vegetation and water levels in an ombrotrophic peatland in southern Patagonia. The transect ran from a Sphagnum magellanicum dominated spot with relatively high water table, to intermediately wet spots with mixed Sphagnum/shrubs vegetation, or dominated by Cyperaceae, eventually to a more elevated and drier spot dominated by cushion plants (mainly Astelia pumila). There were large differences in peat accumulation rates and peat densities, with faster peat growth and lower densities under Sphagnum, but overall carbon accumulation rates were quite similar in the various microenvironments. At most plots C/N ratios decreased with depth, concurrent with increasing humification index derived from FT-IR spectra. But under cushion plants this relation was opposite: more humification with depth, but also C/N ratios increases. This reflected the differing source material at depth under the cushion plants, and that the cushion plant peat layers were formed on top of Sphagnum peat. The divergent source material throughout a peat core makes it difficult to use C/N ratios to indicate peat decomposition rates. Although the low peat density and higher C/N ratios indicate that overall carbon turnover is slow at Sphagnum plots, pore water methane concentrations were elevated. At cushion plant plots, however, higher redox potentials exist until greater depths due to aerenchymous roots, inhibiting methane production and release. Our results demonstrate that large variation exists within pristine bogs, in terms of decomposition patterns, organic matter quality, and carbon turnover pathways, corresponding to variation in surface moisture levels and vegetation. Furthermore, variation in carbon cycling properties are maintained in buried peat layers and reflect more the organic material of that layer, than the current surface carbon dynamics.

A new metric of inclusive fitness predicts the human mortality profile.

PubMed

Newman, Saul J; Easteal, Simon

2015-01-01

Biological species have evolved characteristic patterns of age-specific mortality across their life spans. If these mortality profiles are shaped by natural selection they should reflect underlying variation in the fitness effect of mortality with age. Direct fitness models, however, do not accurately predict the mortality profiles of many species. For several species, including humans, mortality rates vary considerably before and after reproductive ages, during life-stages when no variation in direct fitness is possible. Variation in mortality rates at these ages may reflect indirect effects of natural selection acting through kin. To test this possibility we developed a new two-variable measure of inclusive fitness, which we term the extended genomic output or EGO. Using EGO, we estimate the inclusive fitness effect of mortality at different ages in a small hunter-gatherer population with a typical human mortality profile. EGO in this population predicts 90% of the variation in age-specific mortality. This result represents the first empirical measurement of inclusive fitness of a trait in any species. It shows that the pattern of human survival can largely be explained by variation in the inclusive fitness cost of mortality at different ages. More generally, our approach can be used to estimate the inclusive fitness of any trait or genotype from population data on birth dates and relatedness.

Intra-Seasonal Flexibility in Avian Metabolic Performance Highlights the Uncoupling of Basal Metabolic Rate and Thermogenic Capacity

PubMed Central

Petit, Magali; Lewden, Agnès; Vézina, François

2013-01-01

Stochastic winter weather events are predicted to increase in occurrence and amplitude at northern latitudes and organisms are expected to cope through phenotypic flexibility. Small avian species wintering in these environments show acclimatization where basal metabolic rate (BMR) and maximal thermogenic capacity (MSUM) are typically elevated. However, little is known on intra-seasonal variation in metabolic performance and on how population trends truly reflect individual flexibility. Here we report intra-seasonal variation in metabolic parameters measured at the population and individual levels in black-capped chickadees ( Poecile atricapillus ). Results confirmed that population patterns indeed reflect flexibility at the individual level. They showed the expected increase in BMR (6%) and MSUM (34%) in winter relative to summer but also, and most importantly, that these parameters changed differently through time. BMR began its seasonal increase in November, while MSUM had already achieved more than 20% of its inter-seasonal increase by October, and declined to its starting level by March, while MSUM remained high. Although both parameters co-vary on a yearly scale, this mismatch in the timing of variation in winter BMR and MSUM likely reflects different constraints acting on different physiological components and therefore suggests a lack of functional link between these parameters. PMID:23840843

High-Resolution P'P' Precursor Imaging of Nazca-South America Plate Boundary Zones and Inferences for Transition Zone Temperature and Composition

NASA Astrophysics Data System (ADS)

Gu, Y. J.; Schultz, R.

2013-12-01

Knowledge of upper mantle transition zone stratification and composition is highly dependent on our ability to efficiently extract and properly interpret small seismic arrivals. A promising high-frequency seismic phase group particularly suitable for a global analysis is P'P' precursors, which are capable of resolving mantle structures at vertical and lateral resolution of approximately 5 and 200 km, respectively, owing to their shallow incidence angle and small, quasi-symmetric Fresnel zones. This study presents a simultaneous analysis of SS and P'P' precursors based on deconvolution, Radon transform and depth migration. Our multi-resolution survey of the mantle near Nazca-South America subduction zone reveals both olivine and garnet related transitions at depth below 400 km. We attribute a depressed 660 to thermal variations, whereas compositional variations atop the upper-mantle transition zone are needed to explain the diminished or highly complex reflected/scattered signals from the 410 km discontinuity. We also observe prominent P'P' reflections within the transition zone, especially near the plate boundary zone where anomalously high reflection amplitudes result from a sharp (~10 km thick) mineral phase change resonant with the dominant frequency of the P'P' precursors. Near the base of the upper mantle, the migration of SS precursors shows no evidence of split reflections near the 660-km discontinuity, but potential majorite-ilmenite (590-640 km) and ilmenite-perovskite transitions (740-750 km) are identified based on similarly processed high-frequency P'P' precursors. At nominal mantle temperatures these two phase changes may be seismically indistinguishable, but colder mantle conditions from the descending Nazca plate, the presence of water and variable Fe contents may cause sufficient separation for a reliable analysis. In addition, our preliminary results provide compelling evidence for multiple shallow lower-mantle reflections (at ~800 km) along the elongated plate boundary zones of South America. Slab stagnation at the base of the transition zone could play a key role, though a proper interpretation of this finding would likely entail compositional (rather than strictly thermal) variations in the vicinity of the descending oceanic crust and lithosphere. Overall, the resolution and sensitivity differences between low/intermediate- S and high-frequency P wave reflections are key considerations toward reconciling seismic and mineralogical models of transition zone structure, both at the study location and worldwide.

Direct ab initio dynamics study of the reaction of C 2(A 3Π u) radical with C 2H 6

NASA Astrophysics Data System (ADS)

Li, Na; Huo, Rui-Ping; Zhang, Xiang; Huang, Xu-Ri; Li, Ji-Lai; Sun, Chia-Chung

2011-02-01

The reaction of C 2 (A 3Π u) with C 2H 6 has been investigated at the BMC-CCSD//BB1K/6-311+G(2d, 2p) level. The classical barrier height for H-abstraction reaction is calculated to be 3.32 kcal/mol and the electron transfer behavior is also analyzed in detail. The rate constants are calculated by TST, CVT, and CVT/SCT over a wide temperature range 50-3000 K. The results indicate: (1) variational effect is small and nonclassical reflection effect is important to the H abstraction in high temperature region; and (2) variational effect is negligible and tunneling effect cooperating with the nonclassical reflection effect makes the rate constant temperature independence in low-temperature range. The CVT/SCT rate constants are in excellent agreement with experimental values.

[Application of BaSO4 diffuser plate in 250-400 nm spectral radiance calibration].

PubMed

Jia, Hui; Li, Fu-tian

2004-01-01

Sprayed BaSO4 diffuser plate is the most Lambertian surface actually used in spectral radiance calibration known by now. Its hemispheric reflectance and Bi-directional Reflectance Distribution Functions (BRDF) were measured in the experiment. Its diffuse characteristics were compared with Lambertian surface. In order to calibrate spectral radiance more accurately, the small variation of diffuser's BRDF with scattered angles and the nonuniformity of spectral irradiance on diffuser surface illuminated by the standard lamp should be considered. By integrating the radiation flux reflected by the element area and that entering the entrance slit within the viewing area of spectrometer, the measured spectral radiance can be calculated. Furthermore, the spectral radiance of Lambertian surface whose BRDF was derived from hemispheric reflectance was compared with that from the average of the measured BRDF.

Interpretation of Variations in Modis-Measured Greenness Levels of Amazon Forests During 2000 to 2009

NASA Technical Reports Server (NTRS)

Samanta, Arindam; Ganguly, Sangram; Vermote, Eric; Nemani, Ramakrishna R.; Myneni, Ranga B.

2012-01-01

This work investigates variations in satellite-measured greenness of Amazon forests using ten years of NASA Moderate Resolution Imaging Spectroradiometer (MODIS) enhanced vegetation index (EVI) data. Corruption of optical remote sensing data with clouds and aerosols is prevalent in this region; filtering corrupted data causes spatial sampling constraints, as well as reducing the record length, which introduces large biases in estimates of greenness anomalies. The EVI data, analyzed in multiple ways and taking into account EVI accuracy, consistently show a pattern of negligible changes in the greenness levels of forests both in the area affected by drought in 2005 and outside it. Small random patches of anomalous greening and browning-especially prominent in 2009-appear in all ten years, irrespective of contemporaneous variations in precipitation, but with no persistence over time. The fact that over 90% of the EVI anomalies are insignificantly small-within the envelope of error (95% confidence interval) in EVI-warrants cautious interpretation of these results: there were no changes in the greenness of these forests, or if there were changes, the EVI data failed to capture these either because the constituent reflectances were saturated or the moderate resolution precluded viewing small-scale variations. This suggests a need for more accurate and spatially resolved synoptic views from satellite data and corroborating comprehensive ground sampling to understand the greenness dynamics of these forests.

Terahertz transmission vs reflection imaging and model-based characterization for excised breast carcinomas.

PubMed

Bowman, Tyler; El-Shenawee, Magda; Campbell, Lucas K

2016-09-01

This work presents experimental and analytical comparison of terahertz transmission and reflection imaging modes for assessing breast carcinoma in excised paraffin-embedded human breast tissue. Modeling for both transmission and reflection imaging is developed. The refractive index and absorption coefficient of the tissue samples are obtained. The reflection measurements taken at the system's fixed oblique angle of 30° are shown to be a hybridization of TE and TM modes. The models are validated with transmission spectroscopy at fixed points on fresh bovine muscle and fat tissues. Images based on the calculated absorption coefficient and index of refraction of bovine tissue are successfully compared with the terahertz magnitude and phase measured in the reflection mode. The validated techniques are extended to 20 and 30 μm slices of fixed human lobular carcinoma and infiltrating ductal carcinoma mounted on polystyrene microscope slides in order to investigate the terahertz differentiation of the carcinoma with non-cancerous tissue. Both transmission and reflection imaging show clear differentiation in carcinoma versus healthy tissue. However, when using the reflection mode, in the calculation of the thin tissue properties, the absorption is shown to be sensitive to small phase variations that arise due to deviations in slide and tissue thickness and non-ideal tissue adhesion. On the other hand, the results show that the transmission mode is much less sensitive to these phase variations. The results also demonstrate that reflection imaging provides higher resolution and more clear margins between cancerous and fibroglandular regions, cancerous and fatty regions, and fibroglandular and fatty tissue regions. In addition, more features consistent with high power pathology images are exhibited in the reflection mode images.

Probe pressure effects on human skin diffuse reflectance and fluorescence spectroscopy measurements

PubMed Central

Lim, Liang; Nichols, Brandon; Rajaram, Narasimhan; Tunnell, James W.

2011-01-01

Diffuse reflectance and fluorescence spectroscopy are popular research techniques for noninvasive disease diagnostics. Most systems include an optical fiber probe that transmits and collects optical spectra in contact with the suspected lesion. The purpose of this study is to investigate probe pressure effects on human skin spectroscopic measurements. We conduct an in-vivo experiment on human skin tissue to study the short-term (<2 s) and long-term (>30 s) effects of probe pressure on diffuse reflectance and fluorescence measurements. Short-term light probe pressure (P0 < 9 mN∕mm2) effects are within 0 ± 10% on all physiological properties extracted from diffuse reflectance and fluorescence measurements, and less than 0 ± 5% for diagnostically significant physiological properties. Absorption decreases with site-specific variations due to blood being compressed out of the sampled volume. Reduced scattering coefficient variation is site specific. Intrinsic fluorescence shows a large standard error, although no specific pressure-related trend is observed. Differences in tissue structure and morphology contribute to site-specific probe pressure effects. Therefore, the effects of pressure can be minimized when the pressure is small and applied for a short amount of time; however, long-term and large pressures induce significant distortions in measured spectra. PMID:21280899

Variability in seismic properties of the décollement offshore Central Sumatra

NASA Astrophysics Data System (ADS)

Henstock, T.; Gardner, K.

2016-12-01

The plate boundary fault properties along subduction margins are primary controls on the magnitude, location and timing of megathrust earthquakes. We have reprocessed and analysed multichannel seismic reflection data from the Sumatra margin between Simeulue and Siberut; we have been careful to preserve amplitudes in order to allow us to investigate the properties of faults within the accretionary prism and the main plate boundary fault. Faults near the deformation front and beneath the initial folds clearly extend to oceanic basement, and the same is largely true where they can be clearly identified within the main part of the prism; limited exceptions appear to be present around topographic features on the downgoing plate. The biggest uncertainty in true amplitude studies is how to compensate for attenuation of the seismic waves. We use the variation in amplitude as a function of the prism thickness to estimate the effect of attenuation. Once the effects of attenuation are removed, absolute estimated reflection coefficients for the composite basement/decollement reflection are typically 0.1-0.15, although a small number of profiles show reflection coefficients as high as 0.2. The most likely cause of these variations is fluid content and pressure; we show examples where high amplitude prism faults link to a low amplitude decollement, suggesting hydraulic connectivity.

The relationship between elastomer opacity, colorimeter beam size, and measured colorimetric response.

PubMed

Rugh, E H; Johnston, W M; Hesse, N S

1991-01-01

The effect of opacity on the colorimetric responses of large-area and small-area colorimeters was determined using an elastomer intended for maxillofacial prosthetics use and containing various pigments at different concentrations. Opacity was determined by calculating the contrast ratio of 2-mm-thick specimens against black and white backings, using Kubelka-Munk analyses to correct for thickness and backing color variations. The measure of comparison of the two colorimeters was the relative difference in tristimulus reflectance, with the tristimulus reflectance of the large-area colorimeter as the basis of the relative difference. A significant quadratic relationship was found between contrast ratio and the relative difference in tristimulus reflectance. This relationship may be used to describe opacity without the need to make optical observations or measurements of a thin layer of material on contrasting backings. The small-area colorimeter produced color parameters that are a measure of the combined effects of both color and opacity. The importance of beam size considerations of optical measuring devices for translucent natural and prosthetic materials was emphasized.

Regional-scale drivers of forest structure and function in northwestern Amazonia.

PubMed

Higgins, Mark A; Asner, Gregory P; Anderson, Christopher B; Martin, Roberta E; Knapp, David E; Tupayachi, Raul; Perez, Eneas; Elespuru, Nydia; Alonso, Alfonso

2015-01-01

Field studies in Amazonia have found a relationship at continental scales between soil fertility and broad trends in forest structure and function. Little is known at regional scales, however, about how discrete patterns in forest structure or functional attributes map onto underlying edaphic or geological patterns. We collected airborne LiDAR (Light Detection and Ranging) data and VSWIR (Visible to Shortwave Infrared) imaging spectroscopy measurements over 600 km2 of northwestern Amazonian lowland forests. We also established 83 inventories of plant species composition and soil properties, distributed between two widespread geological formations. Using these data, we mapped forest structure and canopy reflectance, and compared them to patterns in plant species composition, soils, and underlying geology. We found that variations in soils and species composition explained up to 70% of variation in canopy height, and corresponded to profound changes in forest vertical profiles. We further found that soils and plant species composition explained more than 90% of the variation in canopy reflectance as measured by imaging spectroscopy, indicating edaphic and compositional control of canopy chemical properties. We last found that soils explained between 30% and 70% of the variation in gap frequency in these forests, depending on the height threshold used to define gaps. Our findings indicate that a relatively small number of edaphic and compositional variables, corresponding to underlying geology, may be responsible for variations in canopy structure and chemistry over large expanses of Amazonian forest.

Intrapopulation Genome Size Variation in D. melanogaster Reflects Life History Variation and Plasticity

PubMed Central

Ellis, Lisa L.; Huang, Wen; Quinn, Andrew M.; Ahuja, Astha; Alfrejd, Ben; Gomez, Francisco E.; Hjelmen, Carl E.; Moore, Kristi L.; Mackay, Trudy F. C.; Johnston, J. Spencer; Tarone, Aaron M.

2014-01-01

We determined female genome sizes using flow cytometry for 211 Drosophila melanogaster sequenced inbred strains from the Drosophila Genetic Reference Panel, and found significant conspecific and intrapopulation variation in genome size. We also compared several life history traits for 25 lines with large and 25 lines with small genomes in three thermal environments, and found that genome size as well as genome size by temperature interactions significantly correlated with survival to pupation and adulthood, time to pupation, female pupal mass, and female eclosion rates. Genome size accounted for up to 23% of the variation in developmental phenotypes, but the contribution of genome size to variation in life history traits was plastic and varied according to the thermal environment. Expression data implicate differences in metabolism that correspond to genome size variation. These results indicate that significant genome size variation exists within D. melanogaster and this variation may impact the evolutionary ecology of the species. Genome size variation accounts for a significant portion of life history variation in an environmentally dependent manner, suggesting that potential fitness effects associated with genome size variation also depend on environmental conditions. PMID:25057905

Variation in Chemotherapy Utilization in Ovarian Cancer: The Relative Contribution of Geography

PubMed Central

Polsky, Daniel; Armstrong, Katrina A; Randall, Thomas C; Ross, Richard N; Even-Shoshan, Orit; Rosenbaum, Paul R; Silber, Jeffrey H

2006-01-01

Objective This study investigates geographic variation in chemotherapy utilization for ovarian cancer in both absolute and relative terms and examines area characteristics associated with this variation. Data Sources Surveillance, Epidemiology, and End Results (SEER) Medicare data from 1990 to 2001 for Medicare patients over 65 with a diagnosis of ovarian cancer between 1990 and 1999. Chemotherapy within a year of diagnosis was identified by Medicare billing codes. The hospital referral region (HRR) represents the geographic unit of analysis. Study Design A logit model predicting the probability of receiving chemotherapy by each of the 39 HRRs. Control variables included medical characteristics (patient age, stage, year of diagnosis, and comorbidities) and socioeconomic characteristics (race, income, and education). The variation among HRRs was tested by the χ2 statistic, and the relative contribution was measured by the ω statistic. HHR market characteristic are then used to explain HRR-level variation. Principal Findings The average chemotherapy rate was 56.6 percent, with a range by HRR from 33 percent to 67 percent. There were large and significant differences in chemotherapy use between HRRs, reflected by a χ2 for HRR of 146 (df=38, p<.001). HRR-level variation in chemotherapy use can be partially explained by higher chemotherapy rates in HRRs with a higher percentage of hospitals with oncology services. However, an ω analysis indicates that, by about 15 to one, the variation between patients in use of chemotherapy reflects variations in patient characteristics rather than unexplained variation among HRRs. Conclusions While absolute levels of chemotherapy variation between geographic areas are large and statistically significant, this analysis suggests that the role of geography in determining who gets chemotherapy is small relative to individual medical characteristics. Nevertheless, while variation by medical characteristics can be medically justified, the same cannot be said for geographic variation. Our finding that density of oncology hospitals predicts chemotherapy use suggests that provider supply is positively correlated with geographic variation. PMID:17116116

The effect of local parameters on gas turbine emissions

NASA Technical Reports Server (NTRS)

Kauffman, C. W.; Correa, S. M.; Orozco, N. J.

1980-01-01

Gas turbine engine inlet parameters reflect changes in local atmospheric conditions. The pollutant emissions for the engine reflects these changes. In attempting to model the effect of the changing ambient conditions on the emissions it was found that these emissions exhibit an extreme sensitivity to some of the details of the combustion process such as the local fuel-air ratio and the size of the drops in the fuel spray. Fuel-air ratios have been mapped under nonburning conditions using a single JT8D-17 combustion can at simulated idle conditions, and significant variations in the local values have been found. Modelling of the combustor employs a combination of perfectly stirred and plug flow reactors including a finite rate vaporization treatment of the fuel spray. Results show that a small increase in the mean drop size can lead to a large increase in hydrocarbon emissions and decreasing the value of the CO-OH rate constant can lead to large increases in the carbon monoxide emissions. These emissions may also be affected by the spray characteristics with larger drops retarding the combustion process. Hydrocarbon, carbon monoxide, and oxides of nitrogen emissions calculated using the model accurately reflect measured emission variations caused by changing engine inlet conditions.

Monitoring the reflection from an artificial defect in rail track using guided wave ultrasound

NASA Astrophysics Data System (ADS)

Loveday, Philip W.; Taylor, Rebecca M. C.; Long, Craig S.; Ramatlo, Dineo A.

2018-04-01

Guided wave ultrasound has the potential to detect relatively large defects in continuously welded rail track at long range. As monitoring can be performed in near real time it would be acceptable to only detect fairly large cracks provided this is achieved prior to complete rail breakage. Heavy haul rail lines are inspected periodically by conventional ultrasound and sections with even relatively small cracks are removed; therefore, no sizable defects are available to demonstrate monitoring in the presence of realistic environmental operating conditions. Instead, we glued a small mass to the rail to simulate reflection from a crack and monitored the guided wave signals as the glue joint deteriorated over time. Data was collected over a two week period on an operational heavy haul line. A piezoelectric transducer mounted under the head of the rail was used in pulse-echo mode to transmit and receive a mode of propagation with energy confined mainly in the head of the rail. The small mass was attached under the head of the rail, at a distance of 375m from the transducer, using a cyanoacrylate glue, which was not expected to remain intact for long. Pre-processing of the collected signals involved rejection of signals containing train noise, averaging, filtering and dispersion compensation. Reflections from aluminothermic welds were used to stretch and scale the signals to reduce the influence of temperature variations. Singular value decomposition and independent component analysis were then applied to the signals with the aim of separating the reflection caused by the artificial defect from the background signal. The performance of these techniques was compared for different time spans. The reflection from the artificial defect showed unanticipated fluctuations.

Contribution to the theory of tidal oscillations of an elastic earth. External tidal potential

NASA Technical Reports Server (NTRS)

Musen, P.

1974-01-01

The differential equations of the tidal oscillations of the earth were established under the assumption that the interior of the earth is laterally inhomogeneous. The theory was developed using vectorial and dyadic symbolism to shorten the exposition and to reduce the differential equations to a symmetric form convenient for programming and for numerical integration. The formation of tidal buldges on the surfaces of discontinuity and the changes in the internal density produce small periodic variations in the exterior geopotential which are reflected in the motion of artificial satellites. The analoques of Love elastic parameters in the expansion of exterior tidal potential reflect the asymmetric and inhomogeneous structure of the interior of the earth.

Broad-Band Integrated Optical Electric Field Sensor Using Reflection Mach-Zehnder Waveguide Modulator

NASA Astrophysics Data System (ADS)

Zhang, Jiahong; Zhao, Zhengang; Li, Chuan; Li, Yingna

2017-09-01

A lithium niobate (LiNbO3) broad-band photonic sensor using reflection-type Mach-Zehnder optical waveguide modulator has been designed, fabricated, and experimentally demonstrated. The bare chip size of the sensor is microminiaturized as small as 20×5×0.5 mm3. The sensor has a wide band frequency response from 10 kHz to 20 GHz with variation less than ± 5 dB. The sensor system shows better linear characteristic from 100 mV/m to 700 V/m, and the sensitivity is 33 mV/m. Besides, the nanosecond EMP with intensity of 30 kV/m has been measured in the time domain.

Spectral and geometrical variation of the bidirectional reflectance distribution function of diffuse reflectance standards.

PubMed

Ferrero, Alejandro; Rabal, Ana María; Campos, Joaquín; Pons, Alicia; Hernanz, María Luisa

2012-12-20

A study on the variation of the spectral bidirectional reflectance distribution function (BRDF) of four diffuse reflectance standards (matte ceramic, BaSO(4), Spectralon, and white Russian opal glass) is accomplished through this work. Spectral BRDF measurements were carried out and, using principal components analysis, its spectral and geometrical variation respect to a reference geometry was assessed from the experimental data. Several descriptors were defined in order to compare the spectral BRDF variation of the four materials.

Long-term variations of the upper atmosphere parameters on Rome ionosonde observations and their interpretation

NASA Astrophysics Data System (ADS)

Perrone, Loredana; Mikhailov, Andrey; Cesaroni, Claudio; Alfonsi, Lucilla; Santis, Angelo De; Pezzopane, Michael; Scotto, Carlo

2017-09-01

A recently proposed self-consistent approach to the analysis of thermospheric and ionospheric long-term trends has been applied to Rome ionosonde summer noontime observations for the (1957-2015) period. This approach includes: (i) a method to extract ionospheric parameter long-term variations; (ii) a method to retrieve from observed foF1 neutral composition (O, O2, N2), exospheric temperature, Tex and the total solar EUV flux with λ < 1050 Å; and (iii) a combined analysis of the ionospheric and thermospheric parameter long-term variations using the theory of ionospheric F-layer formation. Atomic oxygen, [O] and [O]/[N2] ratio control foF1 and foF2 while neutral temperature, Tex controls hmF2 long-term variations. Noontime foF2 and foF1 long-term variations demonstrate a negative linear trend estimated over the (1962-2010) period which is mainly due to atomic oxygen decrease after ˜1990. A linear trend in (δhmF2)11y estimated over the (1962-2010) period is very small and insignificant reflecting the absence of any significant trend in neutral temperature. The retrieved neutral gas density, ρ atomic oxygen, [O] and exospheric temperature, Tex long-term variations are controlled by solar and geomagnetic activity, i.e. they have a natural origin. The residual trends estimated over the period of ˜5 solar cycles (1957-2015) are very small (<0.5% per decade) and statistically insignificant.

Regional-Scale Drivers of Forest Structure and Function in Northwestern Amazonia

PubMed Central

Higgins, Mark A.; Asner, Gregory P.; Anderson, Christopher B.; Martin, Roberta E.; Knapp, David E.; Tupayachi, Raul; Perez, Eneas; Elespuru, Nydia; Alonso, Alfonso

2015-01-01

Field studies in Amazonia have found a relationship at continental scales between soil fertility and broad trends in forest structure and function. Little is known at regional scales, however, about how discrete patterns in forest structure or functional attributes map onto underlying edaphic or geological patterns. We collected airborne LiDAR (Light Detection and Ranging) data and VSWIR (Visible to Shortwave Infrared) imaging spectroscopy measurements over 600 km2 of northwestern Amazonian lowland forests. We also established 83 inventories of plant species composition and soil properties, distributed between two widespread geological formations. Using these data, we mapped forest structure and canopy reflectance, and compared them to patterns in plant species composition, soils, and underlying geology. We found that variations in soils and species composition explained up to 70% of variation in canopy height, and corresponded to profound changes in forest vertical profiles. We further found that soils and plant species composition explained more than 90% of the variation in canopy reflectance as measured by imaging spectroscopy, indicating edaphic and compositional control of canopy chemical properties. We last found that soils explained between 30% and 70% of the variation in gap frequency in these forests, depending on the height threshold used to define gaps. Our findings indicate that a relatively small number of edaphic and compositional variables, corresponding to underlying geology, may be responsible for variations in canopy structure and chemistry over large expanses of Amazonian forest. PMID:25793602

Colony membership is reflected by variations in cuticular hydrocarbon profile in a Neotropical paper wasp, Polistes satan (Hymenoptera, Vespidae).

PubMed

Tannure-Nascimento, I C; Nascimento, F S; Turatti, I C; Lopes, N P; Trigo, J R; Zucchi, R

2007-06-27

Nestmate recognition is one the most important features in social insect colonies. Although epicuticular lipids or cuticular hydrocarbons have both structural and defensive functions in insects, they also seem to be involved in several aspects of communication in wasps, bees and ants. We analyzed and described for the first time the cuticular hydrocarbons of a Neotropical paper wasp, Polistes satan, and found that variation in hydrocarbon profile was sufficiently strong to discriminate individuals according to their colony membership. Therefore, it seems that small differences in the proportion of these compounds can be detected and used as a chemical-based cue by nestmates to detect invaders and avoid usurpation.

Soil-geomorphic heterogeneity governs patchy vegetation dynamics at an arid ecotone.

PubMed

Bestelmeyer, Brandon T; Ward, Judy P; Havstad, Kris M

2006-04-01

Soil properties are well known to affect vegetation, but the role of soil heterogeneity in the patterning of vegetation dynamics is poorly documented. We asked whether the location of an ecotone separating grass-dominated and sparsely vegetated areas reflected only historical variation in degradation or was related to variation in inherent soil properties. We then asked whether changes in the cover and spatial organization of vegetated and bare patches assessed using repeat aerial photography reflected self-organizing dynamics unrelated to soil variation or the stable patterning of soil variation. We found that the present-day ecotone was related to a shift from more weakly to more strongly developed soils. Parts of the ecotone were stable over a 60-year period, but shifts between bare and vegetated states, as well as persistently vegetated and bare states, occurred largely in small (<40 m2) patches throughout the study area. The probability that patches were presently vegetated or bare, as well as the probability that vegetation persisted and/or established over the 60-year period, was negatively related to surface calcium carbonate and positively related to subsurface clay content. Thus, only a fraction of the landscape was susceptible to vegetation change, and the sparsely vegetated area probably featured a higher frequency of susceptible soil patches. Patch dynamics and self-organizing processes can be constrained by subtle (and often unrecognized) soil heterogeneity.

Variations in the abundance of iron on Mercury's surface from MESSENGER X-Ray Spectrometer observations

NASA Astrophysics Data System (ADS)

Weider, Shoshana Z.; Nittler, Larry R.; Starr, Richard D.; McCoy, Timothy J.; Solomon, Sean C.

2014-06-01

We present measurements of Mercury's surface composition from the analysis of MESSENGER X-Ray Spectrometer data acquired during 55 large solar flares, which each provide a statistically significant detection of Fe X-ray fluorescence. The Fe/Si data display a clear dependence on phase angle, for which the results are empirically corrected. Mercury's surface has a low total abundance of Fe, with a mean Fe/Si ratio of ˜0.06 (equivalent to ˜1.5 wt% Fe). The absolute Fe/Si values are subject to a number of systematic uncertainties, including the phase-angle correction and possible mineral mixing effects. Individual Fe/Si measurements have an intrinsic error of ˜10%. Observed Fe/Si values display small variations (significant at two standard deviations) from the planetary average value across large regions in Mercury's southern hemisphere. Larger differences are observed between measured Fe/Si values from more spatially resolved footprints on volcanic smooth plains deposits in the northern hemisphere and from those in surrounding terrains. Fe is most likely contained as a minor component in sulfide phases (e.g., troilite, niningerite, daubréelite) and as Fe metal, rather than within mafic silicates. Variations in surface reflectance (i.e., differences in overall reflectance and spectral slope) across Mercury are unlikely to be caused by variations in the abundance of Fe.

Infrared signature of micro-hydration in the organophosphate sarin: An ab initio study

DOE PAGES

Alam, Todd M.; Pearce, Charles Joseph

2015-06-28

The infrared (IR) spectra of micro-hydrated Sarin•(H 2O) n clusters containing between one and four explicit waters have been studied using ab initio density functional theory (DFT) methods. The phosphate group P=O bond vibration region (~1270 to 1290 cm –1) revealed the largest frequency variation with hydration, with a frequency red shift reflecting the direct hydrogen bond formation between the P=O of Sarin and water. Small variations to the P-F stretch (~810 to 815 cm –1) and the C-O-P vibrational modes (~995 to 1004 cm –1) showed that the water interactions with these functional groups were minor, and that themore » structures of Sarin were not extensively perturbed in the hydrated complexes. Increasing the number of explicit hydration waters produced only small vibrational changes in the lowest free energy complexes. These minor changes were consistent with a single water-phosphate hydrogen bond being the dominant structure, though a second water-phosphate hydrogen bond was observed in some complexes and was identified by an additional red shift of the P=O bond vibration. As a result, the H 2O•H 2O vibrational modes (~3450 to 3660 cm –1) increased in complexity with higher hydration levels and reflect the extended hydrogen bonding networks formed between the explicit waters in the hydrated Sarin clusters.« less

Asteroid spectral reflectivities.

NASA Technical Reports Server (NTRS)

Chapman, C. R.; Mccord, T. B.; Johnson, T. V.

1973-01-01

We measured spectral reflectivities (0.3-1.1 micron) for 32 asteroids. There are at least 14 different curve types. Common types are: (a) reddish curves with 10% absorptions near 0.95 micron or beyond 1.0 micron, due to Fe(2+) in minerals such as pyroxenes; (b) flat curves in the visible and near-IR with sharp decreases in the UV and (c) flat curves even into the UV. Several asteroids show probable color variations with rotation, especially 6 Hebe. A sample of 102 asteroids with reliably known colors is derived from the reflectivities and from earlier colorimetry. Several correlations of colors and spectral curve types with orbital and physical parameters are examined: (1) asteroids with large aphelia have flat reflectivities while those with small perihelia are mostly reddish, (2) curve types show evidence for clustering on an a vs e plot, with 0.95 micron bands occuring mainly for Mars-approaching asteroids, (3) no strong correlation exists between color and either proper eccentricity or proper inclination.

On the effect of emergence angle on emissivity spectra: application to small bodies

NASA Astrophysics Data System (ADS)

Maturilli, Alessandro; Helbert, Jörn; Ferrari, Sabrina; D'Amore, Mario

2016-05-01

Dependence of laboratory-measured emissivity spectra from the emergence angle is a subject that still needs a lot of investigations to be fully understood. Most of the previous work is based on reflectance measurements in the VIS-NIR spectral region and on emissivity measurements of flat, solid surfaces (mainly metals), which are not directly applicable to the analysis of remote sensing data. Small bodies in particular (c.f. asteroids Itokawa and 1999JU3, the respective targets of JAXA Hayabusa and Hayabusa 2 missions) have a very irregular surface; hence, the spectra from those rough surfaces are difficult to compare with laboratory spectra, where the observing geometry is always close to "nadir." At the Planetary Emissivity Laboratory of the German Aerospace Center (DLR), we have set up a series of spectral measurements to investigate this problem in the 1- to 16-µm spectral region. We measured the emissivity for two asteroid analogue materials (meteorite Millbillillie and a synthetic enstatite) in vacuum and under purged air, at surface temperature of 100 °C, for emergence angles of 0°, 5°, 10°, 20°, 30°, 40°, 50°, and 60°. Emissivity of a serpentinite slab, already used as calibration target for the MARA instrument on Hayabusa 2 MASCOT lander and for the thermal infrared imager spectrometer on Hayabusa 2 orbiter, was measured under the same conditions. Additionally, a second basalt slab was measured. Both slabs were not measured at 5° inclination. Complementary reflectance measurements of the four samples were taken. For all the samples measured, we found that for calibrated emissivity, significant variations from values obtained at nadir (0° emergence angle) appear only for emergence angles ≥40°. Reflectance measurements confirmed this finding, showing the same trend of variations.

Temporal variation of tectonic tremor activity in southern Taiwan around the 2010 ML6.4 Jiashian earthquake

NASA Astrophysics Data System (ADS)

Chao, Kevin; Peng, Zhigang; Hsu, Ya-Ju; Obara, Kazushige; Wu, Chunquan; Ching, Kuo-En; van der Lee, Suzan; Pu, Hsin-Chieh; Leu, Peih-Lin; Wech, Aaron

2017-07-01

Deep tectonic tremor, which is extremely sensitive to small stress variations, could be used to monitor fault zone processes during large earthquake cycles and aseismic processes before large earthquakes. In this study, we develop an algorithm for the automatic detection and location of tectonic tremor beneath the southern Central Range of Taiwan and examine the spatiotemporal relationship between tremor and the 4 March 2010 ML6.4 Jiashian earthquake, located about 20 km from active tremor sources. We find that tremor in this region has a relatively short duration, short recurrence time, and no consistent correlation with surface GPS data. We find a short-term increase in the tremor rate 19 days before the Jiashian main shock, and around the time when the tremor rate began to rise one GPS station recorded a flip in its direction of motion. We hypothesize that tremor is driven by a slow-slip event that preceded the occurrence of the shallower Jiashian main shock, even though the inferred slip is too small to be observed by all GPS stations. Our study shows that tectonic tremor may reflect stress variation during the prenucleation process of a nearby earthquake.

Small-scale societies exhibit fundamental variation in the role of intentions in moral judgment

PubMed Central

Barrett, H. Clark; Bolyanatz, Alexander; Crittenden, Alyssa N.; Fessler, Daniel M. T.; Fitzpatrick, Simon; Gurven, Michael; Henrich, Joseph; Kanovsky, Martin; Kushnick, Geoff; Pisor, Anne; Scelza, Brooke A.; Stich, Stephen; von Rueden, Chris; Zhao, Wanying; Laurence, Stephen

2016-01-01

Intent and mitigating circumstances play a central role in moral and legal assessments in large-scale industrialized societies. Although these features of moral assessment are widely assumed to be universal, to date, they have only been studied in a narrow range of societies. We show that there is substantial cross-cultural variation among eight traditional small-scale societies (ranging from hunter-gatherer to pastoralist to horticulturalist) and two Western societies (one urban, one rural) in the extent to which intent and mitigating circumstances influence moral judgments. Although participants in all societies took such factors into account to some degree, they did so to very different extents, varying in both the types of considerations taken into account and the types of violations to which such considerations were applied. The particular patterns of assessment characteristic of large-scale industrialized societies may thus reflect relatively recently culturally evolved norms rather than inherent features of human moral judgment. PMID:27035959

Small-scale societies exhibit fundamental variation in the role of intentions in moral judgment.

PubMed

Barrett, H Clark; Bolyanatz, Alexander; Crittenden, Alyssa N; Fessler, Daniel M T; Fitzpatrick, Simon; Gurven, Michael; Henrich, Joseph; Kanovsky, Martin; Kushnick, Geoff; Pisor, Anne; Scelza, Brooke A; Stich, Stephen; von Rueden, Chris; Zhao, Wanying; Laurence, Stephen

2016-04-26

Intent and mitigating circumstances play a central role in moral and legal assessments in large-scale industrialized societies. Although these features of moral assessment are widely assumed to be universal, to date, they have only been studied in a narrow range of societies. We show that there is substantial cross-cultural variation among eight traditional small-scale societies (ranging from hunter-gatherer to pastoralist to horticulturalist) and two Western societies (one urban, one rural) in the extent to which intent and mitigating circumstances influence moral judgments. Although participants in all societies took such factors into account to some degree, they did so to very different extents, varying in both the types of considerations taken into account and the types of violations to which such considerations were applied. The particular patterns of assessment characteristic of large-scale industrialized societies may thus reflect relatively recently culturally evolved norms rather than inherent features of human moral judgment.

Photoluminescence and reflectivity of polymethylmethacrylate implanted by low-energy carbon ions at high fluences

NASA Astrophysics Data System (ADS)

Wang, Jun; Zhu, Fei; Zhang, Bei; Liu, Huixian; Jia, Guangyi; Liu, Changlong

2012-11-01

Polymethylmethacrylate (PMMA) specimens were implanted with 30 keV carbon ions in a fluence range of 1 × 1016 to 2 × 1017 cm-2, and photoluminescence (PL) and reflectivity of the implanted samples were examined. A luminescent band with one peak was found in PL spectra excited by 480 nm line, but its intensity did not vary in parallel with ion fluence. The strongest PL occurred at the fluence of 5 × 1016 cm-2. Results from visible-light-excited micro-Raman spectra indicated that the formation of hydrogenated amorphous carbon structures in subsurface layer and their evolutions with ion fluence could be responsible for the observed PL responses. Measurements of the small-angle reflectance spectra from both the implanted and rear surfaces of samples in the ultraviolet-visible (UV-vis) range demonstrated a kind of both fluence-dependent and wavelength-related reflectivity variations, which were attributed to the structural changes induced by ion implantation. A noticeable reflectivity modification, which may be practically used, could be found at the fluence of 1 × 1016 cm-2.

When neuroscience met clinical pathology: partitioning experimental variation to aid data interpretation in neuroscience.

PubMed

Jeffery, Nick D; Bate, Simon T; Safayi, Sina; Howard, Matthew A; Moon, Lawrence; Jeffery, Unity

2018-03-01

In animal experiments, neuroscientists typically assess the effectiveness of interventions by comparing the average response of groups of treated and untreated animals. While providing useful insights, focusing only on group effects risks overemphasis of small, statistically significant but physiologically unimportant, differences. Such differences can be created by analytical variability or physiological within-individual variation, especially if the number of animals in each group is small enough that one or two outlier values can have considerable impact on the summary measures for the group. Physicians face a similar dilemma when comparing two results from the same patient. To determine whether the change between two values reflects disease progression or known analytical and physiological variation, the magnitude of the difference between two results is compared to the reference change value. These values are generated by quantifying analytical and within-individual variation, and differences between two results from the same patient are considered clinically meaningful only if they exceed the combined effect of these two sources of 'noise'. In this article, we describe how the reference change interval can be applied within neuroscience. This form of analysis provides a measure of outcome at an individual level that complements traditional group-level comparisons, and therefore, introduction of this technique into neuroscience can enrich interpretation of experimental data. It can also safeguard against some of the possible misinterpretations that may occur during analysis of the small experimental groups that are common in neuroscience and, by illuminating analytical error, may aid in design of more efficient experimental methods. © 2018 Federation of European Neuroscience Societies and John Wiley & Sons Ltd.

Scattering of matter waves in spatially inhomogeneous environments

DOE PAGES

Tsitoura, F.; Krüger, P.; Kevrekidis, P. G.; ...

2015-03-30

In this article, we study scattering of quasi-one-dimensional matter waves at an interface of two spatial domains, one with repulsive and one with attractive interatomic interactions. It is shown that the incidence of a Gaussian wave packet from the repulsive to the attractive region gives rise to generation of a soliton train. More specifically, the number of emergent solitons can be controlled, e.g., by the variation of the amplitude or the width of the incoming wave packet. Furthermore, we study the reflectivity of a soliton incident from the attractive region to the repulsive one. We find the reflection coefficient numericallymore » and employ analytical methods, which treat the soliton as a particle (for moderate and large amplitudes) or a quasilinear wave packet (for small amplitudes), to determine the critical soliton momentum (as a function of the soliton amplitude) for which total reflection is observed.« less

Analysing and correcting the differences between multi-source and multi-scale spatial remote sensing observations.

PubMed

Dong, Yingying; Luo, Ruisen; Feng, Haikuan; Wang, Jihua; Zhao, Jinling; Zhu, Yining; Yang, Guijun

2014-01-01

Differences exist among analysis results of agriculture monitoring and crop production based on remote sensing observations, which are obtained at different spatial scales from multiple remote sensors in same time period, and processed by same algorithms, models or methods. These differences can be mainly quantitatively described from three aspects, i.e. multiple remote sensing observations, crop parameters estimation models, and spatial scale effects of surface parameters. Our research proposed a new method to analyse and correct the differences between multi-source and multi-scale spatial remote sensing surface reflectance datasets, aiming to provide references for further studies in agricultural application with multiple remotely sensed observations from different sources. The new method was constructed on the basis of physical and mathematical properties of multi-source and multi-scale reflectance datasets. Theories of statistics were involved to extract statistical characteristics of multiple surface reflectance datasets, and further quantitatively analyse spatial variations of these characteristics at multiple spatial scales. Then, taking the surface reflectance at small spatial scale as the baseline data, theories of Gaussian distribution were selected for multiple surface reflectance datasets correction based on the above obtained physical characteristics and mathematical distribution properties, and their spatial variations. This proposed method was verified by two sets of multiple satellite images, which were obtained in two experimental fields located in Inner Mongolia and Beijing, China with different degrees of homogeneity of underlying surfaces. Experimental results indicate that differences of surface reflectance datasets at multiple spatial scales could be effectively corrected over non-homogeneous underlying surfaces, which provide database for further multi-source and multi-scale crop growth monitoring and yield prediction, and their corresponding consistency analysis evaluation.

Analysing and Correcting the Differences between Multi-Source and Multi-Scale Spatial Remote Sensing Observations

PubMed Central

Dong, Yingying; Luo, Ruisen; Feng, Haikuan; Wang, Jihua; Zhao, Jinling; Zhu, Yining; Yang, Guijun

2014-01-01

Differences exist among analysis results of agriculture monitoring and crop production based on remote sensing observations, which are obtained at different spatial scales from multiple remote sensors in same time period, and processed by same algorithms, models or methods. These differences can be mainly quantitatively described from three aspects, i.e. multiple remote sensing observations, crop parameters estimation models, and spatial scale effects of surface parameters. Our research proposed a new method to analyse and correct the differences between multi-source and multi-scale spatial remote sensing surface reflectance datasets, aiming to provide references for further studies in agricultural application with multiple remotely sensed observations from different sources. The new method was constructed on the basis of physical and mathematical properties of multi-source and multi-scale reflectance datasets. Theories of statistics were involved to extract statistical characteristics of multiple surface reflectance datasets, and further quantitatively analyse spatial variations of these characteristics at multiple spatial scales. Then, taking the surface reflectance at small spatial scale as the baseline data, theories of Gaussian distribution were selected for multiple surface reflectance datasets correction based on the above obtained physical characteristics and mathematical distribution properties, and their spatial variations. This proposed method was verified by two sets of multiple satellite images, which were obtained in two experimental fields located in Inner Mongolia and Beijing, China with different degrees of homogeneity of underlying surfaces. Experimental results indicate that differences of surface reflectance datasets at multiple spatial scales could be effectively corrected over non-homogeneous underlying surfaces, which provide database for further multi-source and multi-scale crop growth monitoring and yield prediction, and their corresponding consistency analysis evaluation. PMID:25405760

Variation of Metabolite and Hormone Contents in Human Milk.

PubMed

Demmelmair, Hans; Koletzko, Berthold

2017-03-01

Animal studies show that the lactation period contributes to metabolic programming of the offspring and that oral leptin and insulin show bioactivity. Stage of lactation, duration of gestation, maternal body composition, and maternal diet seem to influence the concentrations of small molecules in human milk. Variability of small molecule concentrations seems higher in preterm milk than in term milk. Insulin in human milk shows concentrations similar to plasma. Leptin concentration is lower in milk than in plasma and reflects maternal body mass index. Early in lactation, leptin could contribute to mediating the association between maternal and infant body composition. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

Temporal versus spatial variation in leaf reflectance under changing water stress conditions

NASA Technical Reports Server (NTRS)

Cohen, Warren B.

1991-01-01

Leaf reflectance changes associated with changes in water stress were analyzed in two separate experiments. Results indicate that the variation in reflectance among collections of leaves of a given species all at the same level of water stress is at least as great as the variation in reflectance associated with changes in water stress for a given leaf collection of that species. The implications is that results from leaf reflectance-water stress studies have only limited applicability to the remote sensing of plant canopy water stress.

A sampling procedure to guide the collection of narrow-band, high-resolution spatially and spectrally representative reflectance data. [satellite imagery of earth resources

NASA Technical Reports Server (NTRS)

Brand, R. R.; Barker, J. L.

1983-01-01

A multistage sampling procedure using image processing, geographical information systems, and analytical photogrammetry is presented which can be used to guide the collection of representative, high-resolution spectra and discrete reflectance targets for future satellite sensors. The procedure is general and can be adapted to characterize areas as small as minor watersheds and as large as multistate regions. Beginning with a user-determined study area, successive reductions in size and spectral variation are performed using image analysis techniques on data from the Multispectral Scanner, orbital and simulated Thematic Mapper, low altitude photography synchronized with the simulator, and associated digital data. An integrated image-based geographical information system supports processing requirements.

Reduction of intensity variations on the absorbers of ideal flux concentrators

NASA Technical Reports Server (NTRS)

Greenman, P.

1980-01-01

Large nonuniformities occur in the instantaneous distribution of flux on the absorber of an ideal light concentrator when it is illuminated by a point source such as the sun. These nonuniformities may be reduced by texturing the reflecting surface with small distortions. Such distortions will also be effective if used in the primary reflector of a two-stage concentrator. Data on a model compound parabolic concentrator are presented. The suitability of such concentrators for use by spacecraft is mentioned.

Tissue-specific mutation accumulation in human adult stem cells during life

NASA Astrophysics Data System (ADS)

Blokzijl, Francis; de Ligt, Joep; Jager, Myrthe; Sasselli, Valentina; Roerink, Sophie; Sasaki, Nobuo; Huch, Meritxell; Boymans, Sander; Kuijk, Ewart; Prins, Pjotr; Nijman, Isaac J.; Martincorena, Inigo; Mokry, Michal; Wiegerinck, Caroline L.; Middendorp, Sabine; Sato, Toshiro; Schwank, Gerald; Nieuwenhuis, Edward E. S.; Verstegen, Monique M. A.; van der Laan, Luc J. W.; de Jonge, Jeroen; Ijzermans, Jan N. M.; Vries, Robert G.; van de Wetering, Marc; Stratton, Michael R.; Clevers, Hans; Cuppen, Edwin; van Boxtel, Ruben

2016-10-01

The gradual accumulation of genetic mutations in human adult stem cells (ASCs) during life is associated with various age-related diseases, including cancer. Extreme variation in cancer risk across tissues was recently proposed to depend on the lifetime number of ASC divisions, owing to unavoidable random mutations that arise during DNA replication. However, the rates and patterns of mutations in normal ASCs remain unknown. Here we determine genome-wide mutation patterns in ASCs of the small intestine, colon and liver of human donors with ages ranging from 3 to 87 years by sequencing clonal organoid cultures derived from primary multipotent cells. Our results show that mutations accumulate steadily over time in all of the assessed tissue types, at a rate of approximately 40 novel mutations per year, despite the large variation in cancer incidence among these tissues. Liver ASCs, however, have different mutation spectra compared to those of the colon and small intestine. Mutational signature analysis reveals that this difference can be attributed to spontaneous deamination of methylated cytosine residues in the colon and small intestine, probably reflecting their high ASC division rate. In liver, a signature with an as-yet-unknown underlying mechanism is predominant. Mutation spectra of driver genes in cancer show high similarity to the tissue-specific ASC mutation spectra, suggesting that intrinsic mutational processes in ASCs can initiate tumorigenesis. Notably, the inter-individual variation in mutation rate and spectra are low, suggesting tissue-specific activity of common mutational processes throughout life.

High polymorphism in MHC-DRB genes in golden snub-nosed monkeys reveals balancing selection in small, isolated populations.

PubMed

Zhang, Pei; Huang, Kang; Zhang, Bingyi; Dunn, Derek W; Chen, Dan; Li, Fan; Qi, Xiaoguang; Guo, Songtao; Li, Baoguo

2018-03-13

Maintaining variation in immune genes, such as those of the major histocompatibility complex (MHC), is important for individuals in small, isolated populations to resist pathogens and parasites. The golden snub-nosed monkey (Rhinopithecus roxellana), an endangered primate endemic to China, has experienced a rapid reduction in numbers and severe population fragmentation over recent years. For this study, we measured the DRB diversity among 122 monkeys from three populations in the Qinling Mountains, and estimated the relative importance of different agents of selection in maintaining variation of DRB genes. We identified a total of 19 DRB sequences, in which five alleles were novel. We found high DRB variation in R. roxellana and three branches of evidence suggesting that balancing selection has contributed to maintaining MHC polymorphism over the long term in this species: i) different patterns of both genetic diversity and population differentiation were detected at MHC and neutral markers; ii) an excess of non-synonymous substitutions compared to synonymous substitutions at antigen binding sites, and maximum-likelihood-based random-site models, showed significant positive selection; and iii) phylogenetic analyses revealed a pattern of trans-species evolution for DRB genes. High levels of DRB diversity in these R. roxellana populations may reflect strong selection pressure in this species. Patterns of genetic diversity and population differentiation, positive selection, as well as trans-species evolution, suggest that pathogen-mediated balancing selection has contributed to maintaining MHC polymorphism in R. roxellana over the long term. This study furthers our understanding of the role pathogen-mediated balancing selection has in maintaining variation in MHC genes in small and fragmented populations of free-ranging vertebrates.

Bone Histology in Dysalotosaurus lettowvorbecki (Ornithischia: Iguanodontia) – Variation, Growth, and Implications

PubMed Central

Hübner, Tom R.

2012-01-01

Background Dysalotosaurus lettowvorbecki is a small ornithopod dinosaur known from thousands of bones and several ontogenetic stages. It was found in a single locality within the Tendaguru Formation of southeastern Tanzania, possibly representing a single herd. Dysalotosaurus provides an excellent case study for examining variation in bone microstructure and life history and helps to unravel the still mysterious growth pattern of small ornithopods. Methodology/Principal Findings Five different skeletal elements were sampled, revealing microstructural variation between individuals, skeletal elements, cross sectional units, and ontogenetic stages. The bone wall consists of fibrolamellar bone with strong variability in vascularization and development of growth cycles. Larger bones with a high degree of utilization have high relative growth rates and seldom annuli/LAGs, whereas small and less intensively used bones have lower growth rates and a higher number of these resting lines. Due to the scarcity of annuli/LAGs, the reconstruction of the life history of Dysalotosaurus was carried out using regularly developed and alternating slow and fast growing zones. Dysalotosaurus was a precocial dinosaur, which experienced sexual maturity at ten years, had an indeterminate growth pattern, and maximum growth rates comparable to a large kangaroo. Conclusions/Significance The variation in the bone histology of Dysalotosaurus demonstrates the influence of size, utilization, and shape of bones on relative growth rates. Annuli/LAGs are not the only type of annual growth cycles that can be used to reconstruct the life history of fossil vertebrates, but the degree of development of these lines may be of importance for the reconstruction of paleobehavior. The regular development of annuli/LAGs in subadults and adults of large ornithopods therefore reflects higher seasonal stress due to higher food demands, migration, and altricial breeding behavior. Small ornithopods often lack regularly developed annuli/LAGs due to lower food demands, no need for migration, and precocial behavior. PMID:22238683

Modelling multiple hospital outcomes: the impact of small area and primary care practice variation.

PubMed

Congdon, Peter

2006-11-16

Appropriate management of care--for example, avoiding unnecessary attendances at, or admissions to, hospital emergency units when they could be handled in primary care--is an important part of health strategy. However, some variations in these outcomes could be due to genuine variations in health need. This paper proposes a new method of explaining variations in hospital utilisation across small areas and the general practices (GPs) responsible for patient primary care. By controlling for the influence of true need on such variations, one may identify remaining sources of excess emergency attendances and admissions, both at area and practice level, that may be related to the quality, resourcing or organisation of care. The present paper accordingly develops a methodology that recognises the interplay between population mix factors (health need) and primary care factors (e.g. referral thresholds), that allows for unobserved influences on hospitalisation usage, and that also reflects interdependence between hospital outcomes. A case study considers relativities in attendance and admission rates at a North London hospital involving 149 small areas and 53 GP practices. A fixed effects model shows variations in attendances and admissions are significantly related (positively) to area and practice need, and nursing home patients, and related (negatively) to primary care access and distance of patient homes from the hospital. Modelling the impact of known factors alone is not sufficient to produce a satisfactory fit to the observations, and random effects at area and practice level are needed to improve fit and account for overdispersion. The case study finds variation in attendance and admission rates across areas and practices after controlling for need, and remaining differences between practices may be attributable to referral behaviour unrelated to need, or to staffing, resourcing, and access issues. In managerial terms, the analysis points to the utility of formal statistical analysis of hospitalisation rates as a prelude to non-statistical investigation of primary care resourcing and organisation. For example, there may be implications for the location of staff involved in community management of chronic conditions; health managers may also investigate whether some practices have unusual populations (homeless, asylum seekers, students) that explain different hospital use patterns.

Analyzing structural variations along strike in a deep-water thrust belt

NASA Astrophysics Data System (ADS)

Totake, Yukitsugu; Butler, Robert W. H.; Bond, Clare E.; Aziz, Aznan

2018-03-01

We characterize a deep-water fold-thrust arrays imaged by a high-resolution 3D seismic dataset in the offshore NW Borneo, Malaysia, to understand the kinematics behind spatial arrangement of structural variations throughout the fold-thrust system. The seismic volume used covers two sub-parallel fold trains associated with a series of fore-thrusts and back-thrusts. We measured fault heave, shortening value, fold geometries (forelimb dip, interlimb angle and crest depth) along strike in individual fold trains. Heave plot on strike projection allows to identify individual thrust segments showing semi-elliptical to triangular to bimodal patterns, and linkages of these segments. The linkage sites are marked by local minima in cumulative heave. These local heave minima are compensated by additional structures, such as small imbricate thrusts and tight folds indicated by large forelimb dip and small interlimb angle. Complementary profiles of the shortening amount for the two fold trains result in smoother gradient of total shortening across the structures. We interpret this reflects kinematic interaction between two fold-thrust trains. This type of along-strike variation analysis provides comprehensive understanding of a fold-thrust system and may provide an interpretative strategy for inferring the presence of complex multiple faults in less well-imaged parts of seismic volumes.

Acoustic radiosity for computation of sound fields in diffuse environments

NASA Astrophysics Data System (ADS)

Muehleisen, Ralph T.; Beamer, C. Walter

2002-05-01

The use of image and ray tracing methods (and variations thereof) for the computation of sound fields in rooms is relatively well developed. In their regime of validity, both methods work well for prediction in rooms with small amounts of diffraction and mostly specular reflection at the walls. While extensions to the method to include diffuse reflections and diffraction have been made, they are limited at best. In the fields of illumination and computer graphics the ray tracing and image methods are joined by another method called luminous radiative transfer or radiosity. In radiosity, an energy balance between surfaces is computed assuming diffuse reflection at the reflective surfaces. Because the interaction between surfaces is constant, much of the computation required for sound field prediction with multiple or moving source and receiver positions can be reduced. In acoustics the radiosity method has had little attention because of the problems of diffraction and specular reflection. The utility of radiosity in acoustics and an approach to a useful development of the method for acoustics will be presented. The method looks especially useful for sound level prediction in industrial and office environments. [Work supported by NSF.

Improved canopy reflectance modeling and scene inference through improved understanding of scene pattern

NASA Technical Reports Server (NTRS)

Franklin, Janet; Simonett, David

1988-01-01

The Li-Strahler reflectance model, driven by LANDSAT Thematic Mapper (TM) data, provided regional estimates of tree size and density within 20 percent of sampled values in two bioclimatic zones in West Africa. This model exploits tree geometry in an inversion technique to predict average tree size and density from reflectance data using a few simple parameters measured in the field (spatial pattern, shape, and size distribution of trees) and in the imagery (spectral signatures of scene components). Trees are treated as simply shaped objects, and multispectral reflectance of a pixel is assumed to be related only to the proportions of tree crown, shadow, and understory in the pixel. These, in turn, are a direct function of the number and size of trees, the solar illumination angle, and the spectral signatures of crown, shadow and understory. Given the variance in reflectance from pixel to pixel within a homogeneous area of woodland, caused by the variation in the number and size of trees, the model can be inverted to give estimates of average tree size and density. Because the inversion is sensitive to correct determination of component signatures, predictions are not accurate for small areas.

Intratidal Overdistention and Derecruitment in the Injured Lung: A Simulation Study.

PubMed

Amini, Reza; Herrmann, Jacob; Kaczka, David W

2017-03-01

Ventilated patients with the acute respiratory distress syndrome (ARDS) are predisposed to cyclic parenchymal overdistention and derecruitment, which may worsen existing injury. We hypothesized that intratidal variations in global mechanics, as assessed at the airway opening, would reflect such distributed processes. We developed a computational lung model for determining local instantaneous pressure distributions and mechanical impedances continuously during a breath. Based on these distributions and previous literature, we simulated the within-breath variability of airway segment dimensions, parenchymal viscoelasticity, and acinar recruitment in an injured canine lung for tidal volumes( V T ) of 10, 15, and 20 mL·kg -1 and positive end-expiratory pressures (PEEP) of 5, 10, and 15 cm H 2 O. Acini were allowed to transition between recruited and derecruited states when exposed to stochastically determined critical opening and closing pressures, respectively. For conditions of low V T and low PEEP, we observed small intratidal variations in global resistance and elastance, with a small number of cyclically recruited acini. However, with higher V T and PEEP, larger variations in resistance and elastance were observed, and the majority of acini remained open throughout the breath. Changes in intratidal resistance, elastance, and impedance followed well-defined parabolic trajectories with tracheal pressure, achieving minima near 12 to 16 cm H 2 O. Intratidal variations in lung mechanics may allow for optimization of ventilator settings in patients with ARDS, by balancing lung recruitment against parenchymal overdistention. Titration of airway pressures based on variations in intratidal mechanics may mitigate processes associated with injurious ventilation.

Modeling Saturnshine in Cassini Images of the Rings

NASA Astrophysics Data System (ADS)

Dones, Henry C.; Weiss, J. W.; Porco, C. C.; DiNino, D.; Skinner, R.

2013-10-01

In some viewing geometries, such as large solar phase angles or small solar elevation angles, the light reflected by or transmitted through Saturn's rings can be dominated by Saturnshine, i.e., illumination of the rings by the planet. Saturnshine results in longitudinal variations in the reflectivity of the rings. In addition, Saturn's A Ring and, to a lesser extent, B Ring, show intrinsic longitudinal variations ("azimuthal asymmetry") due to self-gravity wakes. Any attempt to infer physical properties of ring particles and their spatial distribution using ring photometry must consider both Saturnshine and self-gravity wakes. "Ringshine," in turn, complicates photometry of Saturn itself [1]. We have improved the Saturnshine model in [2], which applies a ray-tracing code to N-body simulations of a patch of Saturn's rings, by incorporating measurements of the planet's reflectivity in Cassini images taken in a range of viewing geometries through a number of broadband filters. We will compare the results of our photometric model with measurements of the I/F of the main rings, and will attempt to constrain the intrinsic properties of ring particles, such as their coefficients of restitution in collisions and internal densities. We thank the Cassini project for support. [1] Skinner, R.W., and Weiss, J.W. (2011). http://serc.carleton.edu/cismi/undergrad_research/posters/52679.html [2] Porco, C.C., et al. (2008). Astron J. 136, 2172-2200

Understanding Seasonal Dynamics of the Photo-Protective Xanthophyll Cycle Improves Remote Detection of Photosynthetic Phenology in Deciduous Trees and Evergreen Conifers

NASA Astrophysics Data System (ADS)

Ensminger, I.; Wong, C. Y.; Junker, L. V.; Bathena, Y.; Arain, M. A.; D'Odorico, P.

2017-12-01

The ability of plants to sequester carbon is highly variable over the course of the year and reflects seasonal variation in photosynthetic efficiency. This seasonal variation is most prominent during autumn, when leaves of deciduous tree species undergo senescence, which is associated with the downregulation of photosynthesis and a change of leaf color and leaf optical properties. Vegetation indices derived from remote sensing of leaf optical properties using e.g. spectral reflectance measurements are increasingly used to monitor and predict growing season length and seasonal variation in carbon sequestration. Here we compare leaf-level, canopy-level and drone based observations of leaf spectral reflectance measurements. We demonstrate that some of the widely used vegetation indices such as the normalized difference vegetation index (NDVI) and photochemical reflectance index (PRI) vary in their ability to adequately track the seasonal variation in photosynthetic efficiency and chlorophyll content. We further show that monitoring seasonal variation of photosynthesis using NDVI or PRI is particularly challenging in evergreen conifers, due to little seasonal variation in foliage. However, there is remarkable seasonal variation in leaf optical properties associated with changes in pools of xanthophyll cycle pigments and carotenoids that provide a promising way of monitoring photosynthetic phenology in evergreen conifers via leaf reflectance measurements.

Scanning laser reflection tool for alignment and period measurement of critical-angle transmission gratings

NASA Astrophysics Data System (ADS)

Song, Jungki; Heilmann, Ralf K.; Bruccoleri, Alexander R.; Hertz, Edward; Schatternburg, Mark L.

2017-08-01

We report progress toward developing a scanning laser reflection (LR) tool for alignment and period measurement of critical-angle transmission (CAT) gratings. It operates on a similar measurement principle as a tool built in 1994 which characterized period variations of grating facets for the Chandra X-ray Observatory. A specularly reflected beam and a first-order diffracted beam were used to record local period variations, surface slope variations, and grating line orientation. In this work, a normal-incidence beam was added to measure slope variations (instead of the angled-incidence beam). Since normal incidence reflection is not coupled with surface height change, it enables measurement of slope variations more accurately and, along with the angled-incidence beam, helps to reconstruct the surface figure (or tilt) map. The measurement capability of in-grating period variations was demonstrated by measuring test reflection grating (RG) samples that show only intrinsic period variations of the interference lithography process. Experimental demonstration for angular alignment of CAT gratings is also presented along with a custom-designed grating alignment assembly (GAA) testbed. All three angles were aligned to satisfy requirements for the proposed Arcus mission. The final measurement of roll misalignment agrees with the roll measurements performed at the PANTER x-ray test facility.

Effects of management practices on reflectance of spring wheat canopies. [Williston, North Dakota Agricultural Experiment Station

NASA Technical Reports Server (NTRS)

Daughtry, C. S. T.; Bauer, M. E.; Crecelius, D. W.; Hixson, M. M. (Principal Investigator)

1980-01-01

The effects of available soil moisture, planting date, nitrogen fertilization, and cultivar on reflectance of spring wheat (Triticum aestivum L.) canopies were investigated. Spectral measurements were acquired on eight dates throughout the growing season, along with measurements of crop maturity stage, leaf area index, biomass, plant height, percent soil cover, and soil moisture. Planting date and available soil moisture were the primary agronomic factors which affected reflectance of spring wheat canopies from tillering to maturity. Comparisons of treatments indicated that during the seedling and tillering stages planting date was associated with 36 percent and 85 percent of variation in red and near infrared reflectances, respectively. As the wheat headed and matured, less of the variation in reflectance was associated with planting date and more with available soil moisture. By mid July, soil moisture accounted for 73 percent and 69 percent of the variation in reflectance in red and near infrared bands, respectively. Differences in spectral reflectance among treatments were attributed to changes in leaf area index, biomass, and percent soil cover. Cultivar and N fertilization rate were associated with very little of the variation in the reflectance of these canopies.

Sound pressure distribution and power flow within the gerbil ear canal from 100 Hz to 80 kHz

PubMed Central

Ravicz, Michael E.; Olson, Elizabeth S.; Rosowski, John J.

2008-01-01

Sound pressure was mapped in the bony ear canal of gerbils during closed-field sound stimulation at frequencies from 0.1 to 80 kHz. A 1.27-mm-diam probe-tube microphone or a 0.17-mm-diam fiber-optic miniature microphone was positioned along approximately longitudinal trajectories within the 2.3-mm-diam ear canal. Substantial spatial variations in sound pressure, sharp minima in magnitude, and half-cycle phase changes occurred at frequencies >30 kHz. The sound frequencies of these transitions increased with decreasing distance from the tympanic membrane (TM). Sound pressure measured orthogonally across the surface of the TM showed only small variations at frequencies below 60 kHz. Hence, the ear canal sound field can be described fairly well as a one-dimensional standing wave pattern. Ear-canal power reflectance estimated from longitudinal spatial variations was roughly constant at 0.2–0.5 at frequencies between 30 and 45 kHz. In contrast, reflectance increased at higher frequencies to at least 0.8 above 60 kHz. Sound pressure was also mapped in a microphone-terminated uniform tube—an “artificial ear.” Comparison with ear canal sound fields suggests that an artificial ear or “artificial cavity calibration” technique may underestimate the in situ sound pressure by 5–15 dB between 40 and 60 kHz. PMID:17902852

Investigation of effects of background water on upwelled reflectance spectra and techniques for analysis of dilute primary-treated sewage sludge

NASA Technical Reports Server (NTRS)

Whitlock, C. H.; Usry, J. W.; Witte, W. G.; Farmer, F. H.; Gurganus, E. A.

1979-01-01

In an effort to improve understanding of the effects of variations in background water on reflectance spectra, laboratory tests were conducted with various concentrations of sewage sludge diluted with several types of background water. The results from these tests indicate that reflectance spectra for sewage-sludge mixtures are dependent upon the reflectance of the background water. Both the ratio of sewage-sludge reflectance to background-water reflectance and the ratio of the difference in reflectance to background-water reflectance show spectral variations for different turbid background waters. The difference in reflectance is the only parameter considered.

Investigation of land-use spectral signatures. Ph.D. Thesis. Final Report

NASA Technical Reports Server (NTRS)

Hagewood, J. F.

1975-01-01

A technique was developed to obtain bidirectional reflectance data from natural surfaces by using a folding mirror to transfer the reflected energy from the test surface to a spectroradiometer. The folding mirror was a first surface reflector made by stretching Mylar vacuum coated with aluminum over a light weight frame. The optically folding mirror was positioned over the test surfaces with a moveable platform for both laboratory and field tests. Field tests were conducted using a tethered balloon system to position the folding mirror. A spectroradiometer was designed and built specifically for this investigation. The spectroradiometer had an angular field of view of twenty-four minutes in one axis and ten minutes in the other axis. The radiometer was capable of detecting energies in small bandwidths throughout the electromagnetic spectrum from 0.3 microns to 3.0 microns. Bidirectional reflectance data and variations in the data with source angles were obtained for Saint Augustine grass, Bermuda grass, and a black alluvium soil from the Mississippi River delta.

Mid-latitude spread- F structure

NASA Astrophysics Data System (ADS)

From, W. R.; Meehan, D. H.

1988-07-01

Spread- F has been observed at frequencies of 1.98, 3.84 and 5.80 MHz and multiple angles of arrival have been resolved using an HF radar near Brisbane (27°S, 153°E). The spreading of the ionogram trace has been shown to be due to a spread in angles of arrival of echoes, rather than any 'vertical' spreading. The reflection process appears to involve total specular reflection rather than scattering. The previously reported very strong bias for angles of arrival from the north-west at Brisbane is supported. The direction of movement of the reflection points is not radial and therefore, the structure cannot be purely frontal with purely linear movement, as is often supposed. The velocities are much less than for coexisting travelling ionospheric disturbances. The variations of angle of arrival, range and rate of change of range with frequency do not fit previously proposed ideas of the plasma distribution and an alternative is suggested in which the distortions of the isoionic surfaces resemble small, elongated, asymmetrical 'hills' or 'dips'.

Application of Phase Shifted, Laser Feedback Interferometry to Fluid Physics

NASA Technical Reports Server (NTRS)

Ovryn, Ben; Eppell, Steven J.; Andrews, James H.; Khaydarov, John

1996-01-01

We have combined the principles of phase-shifting interferometry (PSI) and laser-feedback interferometry (LFI) to produce a new instrument that can measure both optical path length (OPL) changes and discern sample reflectivity variations. In LFI, coherent feedback of the incident light either reflected directly from a surface or reflected after transmission through a region of interest will modulate the output intensity of the laser. LFI can yield a high signal-to-noise ratio even for low reflectivity samples. By combining PSI and LFI, we have produced a robust instrument, based upon a HeNe laser, with high dynamic range that can be used to measure either static (dc) or oscillatory changes along the optical path. As with other forms of interferometry, large changes in OPL require phase unwrapping. Conversely, small phase changes are limited by the fraction of a fringe that can be measured. We introduce the phase shifts with an electro-optic modulator (EOM) and use either the Carre or Hariharan algorithms to determine the phase and visibility. We have determined the accuracy and precision of our technique by measuring both the bending of a cantilevered piezoelectric bimorph and linear ramps to the EOM. Using PSI, sub-nanometer displacements can be measured. We have combined our interferometer with a commercial microscope and scanning piezoelectric stage and have measured the variation in OPL and visibility for drops of PDMS (silicone oil) on coated single crystal silicon. Our measurement of the static contact angle agrees with the value of 68 deg stated in the literature.

Compositional Mapping of the Transantarctic Mountains Using Orbital Reflectance Data

NASA Astrophysics Data System (ADS)

Salvatore, M. R.; Niebuhr, S.; Morin, P. J.; Cox, S.

2014-12-01

We report on our progress of remotely mapping compositional variations throughout the Transantarctic Mountains (TAM) using orbital spectroscopic data. These techniques were originally proven effective in Antarctica using moderate spatial resolution (30 m/pixel) Advanced Land Imager (ALI) data, and showed great successes in identifying even minor variations in composition throughout the McMurdo Dry Valleys (MDV) [Salvatore et al., 2013]. However, due to the orbital inclination of the Earth Observing-1 spacecraft, ALI is unable to image the central and southern TAM, making comparable studies at comparable resolutions impossible on a continental scale. Fortunately, the WorldView-2 satellite (DigitalGlobe, Inc.) boasts high-resolution (2 m/pixel) multispectral capabilities, with 8 spectral bands located between 427 nm and 908 nm, and is able to image the entirety of the TAM through off-nadir pointing capabilities. This provides the ability to continue our remote spectral mapping campaign throughout the TAM to identify compositional variations in support of past and future field operations. We present an updated map of relative spectral variability (RSV) in the vicinity of Shackleton Glacier. This mapping product consists of 91 individual WorldView-2 images, each corrected to top-of-atmosphere radiance and parameterized to highlight known compositional properties. The mapped area covers approximately 17,850 square kilometers of ice-covered and exposed terrain. Compositional variations are easily mapped, and small-scale variations in iron-bearing mineralogy are particularly well resolved. We also describe our updated atmospheric correction algorithm for the WorldView-2 dataset, which utilizes in-scene techniques to derive surface reflectance and does not necessitate the use of radiative transfer modeling. Our technique is validated using laboratory reflectance measurements. In conjunction with the Polar Rock Repository at the Ohio State University, we have measured hundreds of individual samples in an effort to verify and "ground-truth" this atmospheric removal algorithm. Using these methodologies and revised techniques, our objective is to make a fully calibrated and atmospherically corrected spectral map of the central TAM available to the scientific community.

Reflection of Fast Magnetosonic Waves near a Magnetic Reconnection Region

NASA Astrophysics Data System (ADS)

Provornikova, E.; Laming, J. M.; Lukin, V. S.

2018-06-01

Magnetic reconnection in the solar corona is thought to be unstable with the formation of multiple interacting plasmoids, and previous studies have shown that plasmoid dynamics can trigger MHD waves of different modes propagating outward from the reconnection site. However, variations in plasma parameters and magnetic field strength in the vicinity of a coronal reconnection site may lead to wave reflection and mode conversion. In this paper we investigate the reflection and refraction of fast magnetoacoustic waves near a reconnection site. Under a justified assumption of an analytically specified Alfvén speed profile, we derive and solve analytically the full wave equation governing the propagation of fast-mode waves in a non-uniform background plasma without recourse to the small wavelength approximation. We show that the waves undergo reflection near the reconnection current sheet due to the Alfvén speed gradient and that the reflection efficiency depends on the plasma-β parameter, as well as on the wave frequency. In particular, we find that waves are reflected more efficiently near reconnection sites in a low-β plasma, which is typical under solar coronal conditions. Also, the reflection is larger for lower-frequency waves while high-frequency waves propagate outward from the reconnection region almost without the reflection. We discuss the implications of efficient wave reflection near magnetic reconnection sites in strongly magnetized coronal plasma for particle acceleration, and also the effect this might have on first ionization potential (FIP) fractionation by the ponderomotive force of these waves in the chromosphere.

Spatial variations in feeding habits and trophic levels of two small pelagic fish species in the central Mediterranean Sea.

PubMed

Rumolo, P; Bonanno, A; Barra, M; Fanelli, E; Calabrò, M; Genovese, S; Ferreri, R; Mazzola, S; Basilone, G

2016-04-01

Trophic ecology of adults of European sardine (Sardina pilchardus) and anchovy (Engraulis encrasicolus) was examined and compared among various regions of central Mediterranean Sea. Carbon and nitrogen stable isotope analyses (δ(13)C and δ(15)N) were adopted as a tool to determine changes in feeding behaviour of adults of sardines and anchovies. In the study period (summer) a clear geographical pattern was recognized in the isotopic composition of both species, with an increasing trend northward. The highest variations in isotopic signal were linked to the geographical positions of the samples and, especially, between pairs of areas: South Sicily/South Campania and Gulf of Gaeta/South Elba. Higher isotope values were found in the anchovies and sardines caught in northern Tyrrhenian Sea, while lower values were mostly estimated in the southern region. Higher carbon and nitrogen isotopes may reflect a more coastal behaviour of both species, being (13)C-enriched source from benthic primary producers in addition to phytoplankton. Variations in the nitrogen isotope ratio may reflect not only differences in the trophic level of prey species, but also variations in the baseline level of food webs. Our results support the hypothesis that feeding behaviour of both species is directly or indirectly influenced by local factors, or by resource partitioning based on zooplankton size. Findings can supply knowledge needed for improving fish stock management and promoting plans able to take into account also local ecosystem analysis. Copyright © 2016 Elsevier Ltd. All rights reserved.

The role of the reflection coefficient in precision measurement of ultrasonic attenuation

NASA Technical Reports Server (NTRS)

Generazio, E. R.

1984-01-01

Ultrasonic attenuation measurements using contact, pulse-echo techniques are sensitive to surface roughness and couplant thickness variations. This can reduce considerable inaccuracies in the measurement of the attenuation coefficient for broadband pulses. Inaccuracies arise from variations in the reflection coefficient at the buffer-couplant-sample interface. The reflection coefficient is examined as a function of the surface roughness and corresponding couplant thickness variations. Interrelations with ultrasonic frequency are illustrated. Reliable attenuation measurements are obtained only when the frequency dependence of the reflection coefficient is incorporated in signal analysis. Data are given for nickel 200 samples and a silicon nitride ceramic bar having surface roughness variations in the 0.3 to 3.0 microns range for signal bandwidths in the 50 to 100 MHz range.

Measuring Snow Grain Size with the Near-Infrared Emitting Reflectance Dome (NERD)

NASA Astrophysics Data System (ADS)

Schneider, A. M.; Flanner, M.

2014-12-01

Because of its high visible albedo, snow plays a large role in Earth's surface energy balance. This role is a subject of intense study, but due to the wide range of snow albedo, variations in the characteristics of snow grains can introduce radiative feedbacks in a snow pack. Snow grain size, for example, is one property which directly affects a snow pack's absorption spectrum. Previous studies model and observe this spectrum, but potential feedbacks induced by these variations are largely unknown. Here, we implement a simple and inexpensive technique to measure snow grain size in an instrument we call the Near-infrared Emitting Reflectance Dome (NERD). A small black styrene dome (~17cm diameter), fitted with two narrowband light-emitting diodes (LEDs) centered around 1300nm and 1550nm and three near-infrared reverse-biased photodiodes, is placed over the snow surface enabling a multi-spectral measurement of the hemispheric directional reflectance factor (HDRF). We illuminate the snow at each wavelength, measure directional reflectance, and infer grain size from the difference in HDRFs measured on the same snow crystals at fixed viewing angles. We validate measurements from the NERD using two different reflectance standards, materials designed to be near perfect Lambertian reflectors, having known, constant reflectances (~99% and ~55%) across a wide range of wavelengths. Using a 3D Monte Carlo model simulating photon pathways through a pack of spherical snow grains, we calculate the difference in HDRFs at 1300nm and 1550nm to predict the calibration curve for a wide range of grain sizes. This theoretically derived curve gives a relationship between effective radius and the difference in HDRFs and allows us to approximate grain sizes using the NERD in just a few seconds. Further calibration requires knowledge of truth values attainable using a previously validated instrument or measurements from an inter-comparison workshop.

Underwater Sound: Deep-Ocean Propagation: Variations of temperature and pressure have great influence on the propagation of sound in the ocean.

PubMed

Frosch, R A

1964-11-13

The absorption of sound in sea water varies markedly with frequency, being much greater at high than at low frequencies. It is sufficiently small at frequencies below several kilocycles per second, however, to permit propagation to thousands of miles. Oceanographic factors produce variations in sound velocity with depth, and these variations have a strong influence on long-range propagation. The deep ocean is characterized by a strong channel, generally at a depth of 500 to 1500 meters. In addition to guided propagation in this channel, the velocity structure gives rise to strongly peaked propagation from surface sources to surface receivers 48 to 56 kilometers away, with strong shadow zones of weak intensity in between. The near-surface shadow zone, in the latter case, may be filled in by bottom reflections or near-surface guided propagation due to a surface isothermal layer. The near-surface shadow zones can be avoided with certainty only through locating sources and receivers deep in the ocean.

New osmium isotope evidence for intracrustal recycling of crustal domains with discrete ages

USGS Publications Warehouse

Hart, G.L.; Johnson, C.M.; Hildreth, W.; Shirey, S.B.

2003-01-01

New 187Os/188Os ratios of Quaternary Mount Adams volcanic rocks from the Cascade arc in southern Washington vary by >300% (187Os/188Os = 0.165-0.564) and fall into high (>0.319) and low (0.166 to 0.281) groups of 187Os/188Os ratios that are substantially more radiogenic than mantle values. These Os isotope compositions and groupings are interpreted to reflect recycling of discrete intracrustal domains with high 187Os/188Os ratios but differing ages, thus recording the process of crustal hybridization and homogenization. Os isotope compositions provide new constraints on amounts of intracrustal recycling in young subduction-zone environments that reflect the magmatic history of the arc. Sr, Nd, Hf, and Pb isotope variations in this young, mafic are complex are too small to allow such constraints.

Experimental quantification of nonlinear time scales in inertial wave rotating turbulence

NASA Astrophysics Data System (ADS)

Yarom, Ehud; Salhov, Alon; Sharon, Eran

2017-12-01

We study nonlinearities of inertial waves in rotating turbulence. At small Rossby numbers the kinetic energy in the system is contained in helical inertial waves with time dependence amplitudes. In this regime the amplitude variations time scales are slow compared to wave periods, and the spectrum is concentrated along the dispersion relation of the waves. A nonlinear time scale was extracted from the width of the spectrum, which reflects the intensity of nonlinear wave interactions. This nonlinear time scale is found to be proportional to (U.k ) -1, where k is the wave vector and U is the root-mean-square horizontal velocity, which is dominated by large scales. This correlation, which indicates the existence of turbulence in which inertial waves undergo weak nonlinear interactions, persists only for small Rossby numbers.

Coherent-backscatter effect - A vector formulation accounting for polarization and absorption effects and small or large scatterers

NASA Technical Reports Server (NTRS)

Peters, Kenneth J.

1992-01-01

Previous theoretical work on the coherent-backscatter effect in the context of speckle time autocorrelation has gone beyond the diffusion approximation and the assumption of isotropic (point) scatterers. This paper extends the theory to include the effects of polarization and absorption, and to give the angular line shape. The results are expressions for angular variations valid for small and large scatterers and linear and circular polarizations, in lossless or lossy media. Calculations show that multiple anisotropic scattering results in the preservation of incident polarization. Application to a problem in radar astronomy is considered. It is shown that the unusual radar measurements (high reflectivity and polarization ratios) of Jupiter's icy Galilean satellites can be explained by coherent backscatter from anisotropic (forward) scatterers.

Fiber-Optic Sensor Would Monitor Growth of Polymer Film

NASA Technical Reports Server (NTRS)

Beamesderfer, Michael

2005-01-01

A proposed optoelectronic sensor system would measure the increase in thickness of a film of parylene (a thermoplastic polymer made from para-xylene) during growth of the film in a vapor deposition process. By enabling real-time monitoring of film thickness, the system would make it possible to identify process conditions favorable for growth and to tailor the final thickness of the film with greater precision than is now possible. The heart of the sensor would be a pair of fiber-optic Fabry-Perot interferometers, depicted schematically in the figure. (In principle, a single such interferometer would suffice. The proposal calls for the use of two interferometers for protective redundancy and increased accuracy.) Each interferometer would include a light source, a fiber-optic coupler, and photodetectors in a control box outside the deposition chamber. A single-mode optical fiber for each interferometer would run from inside the control box to a fused-silica faceplate in a sensor head. The sensory tips of the optical fibers would be polished flush with the free surface of the faceplate. In preparation for use, the sensor head would be mounted with a hermetic seal in a feed-through port in the deposition chamber, such that free face of the faceplate and the sensory tips of the optical fibers would be exposed to the deposition environment. During operation, light would travel along each optical fiber from the control box to the sensor head. A small portion of the light would be reflected toward the control box from the end face of each fiber. Once growth of the parylene film started, a small portion of the light would also be reflected toward the control box from the outer surface of the film. In the control box, the two reflected portions of the light beam would interfere in one of the photodetectors. The difference between the phases of the interfering reflected portions of the light beam would vary in proportion to the increasing thickness of the film and the known index of refraction of the film, causing the photodetector reading to vary in proportion to a known sinusoidal function of film thickness. Electronic means of monitoring this variation and the corresponding variation in phase and thickness are well established in the art of interferometry. Hence, by tracking the cumulative change in phase difference from the beginning of deposition, one could track the growing thickness of the film to within a small fraction of a wavelength of light.

Visual communication with retinex coding.

PubMed

Huck, F O; Fales, C L; Davis, R E; Alter-Gartenberg, R

2000-04-10

Visual communication with retinex coding seeks to suppress the spatial variation of the irradiance (e.g., shadows) across natural scenes and preserve only the spatial detail and the reflectance (or the lightness) of the surface itself. The separation of reflectance from irradiance begins with nonlinear retinex coding that sharply and clearly enhances edges and preserves their contrast, and it ends with a Wiener filter that restores images from this edge and contrast information. An approximate small-signal model of image gathering with retinex coding is found to consist of the familiar difference-of-Gaussian bandpass filter and a locally adaptive automatic-gain control. A linear representation of this model is used to develop expressions within the small-signal constraint for the information rate and the theoretical minimum data rate of the retinex-coded signal and for the maximum-realizable fidelity of the images restored from this signal. Extensive computations and simulations demonstrate that predictions based on these figures of merit correlate closely with perceptual and measured performance. Hence these predictions can serve as a general guide for the design of visual communication channels that produce images with a visual quality that consistently approaches the best possible sharpness, clarity, and reflectance constancy, even for nonuniform irradiances. The suppression of shadows in the restored image is found to be constrained inherently more by the sharpness of their penumbra than by their depth.

Visual Communication with Retinex Coding

NASA Astrophysics Data System (ADS)

Huck, Friedrich O.; Fales, Carl L.; Davis, Richard E.; Alter-Gartenberg, Rachel

2000-04-01

Visual communication with retinex coding seeks to suppress the spatial variation of the irradiance (e.g., shadows) across natural scenes and preserve only the spatial detail and the reflectance (or the lightness) of the surface itself. The separation of reflectance from irradiance begins with nonlinear retinex coding that sharply and clearly enhances edges and preserves their contrast, and it ends with a Wiener filter that restores images from this edge and contrast information. An approximate small-signal model of image gathering with retinex coding is found to consist of the familiar difference-of-Gaussian bandpass filter and a locally adaptive automatic-gain control. A linear representation of this model is used to develop expressions within the small-signal constraint for the information rate and the theoretical minimum data rate of the retinex-coded signal and for the maximum-realizable fidelity of the images restored from this signal. Extensive computations and simulations demonstrate that predictions based on these figures of merit correlate closely with perceptual and measured performance. Hence these predictions can serve as a general guide for the design of visual communication channels that produce images with a visual quality that consistently approaches the best possible sharpness, clarity, and reflectance constancy, even for nonuniform irradiances. The suppression of shadows in the restored image is found to be constrained inherently more by the sharpness of their penumbra than by their depth.

Oxytocin and Vasopressin Receptor Gene Variation as a Proximate Base for Inter- and Intraspecific Behavioral Differences in Bonobos and Chimpanzees

PubMed Central

Staes, Nicky; Stevens, Jeroen M. G.; Helsen, Philippe; Hillyer, Mia; Korody, Marisa; Eens, Marcel

2014-01-01

Recent literature has revealed the importance of variation in neuropeptide receptor gene sequences in the regulation of behavioral phenotypic variation. Here we focus on polymorphisms in the oxytocin receptor gene (OXTR) and vasopressin receptor gene 1a (Avpr1a) in chimpanzees and bonobos. In humans, a single nucleotide polymorphism (SNP) in the third intron of OXTR (rs53576 SNP (A/G)) is linked with social behavior, with the risk allele (A) carriers showing reduced levels of empathy and prosociality. Bonobos and chimpanzees differ in these same traits, therefore we hypothesized that these differences might be reflected in variation at the rs53576 position. We sequenced a 320 bp region surrounding rs53576 but found no indications of this SNP in the genus Pan. However, we identified previously unreported SNP variation in the chimpanzee OXTR sequence that differs from both humans and bonobos. Humans and bonobos have previously been shown to have a more similar 5′ promoter region of Avpr1a when compared to chimpanzees, who are polymorphic for the deletion of ∼360 bp in this region (+/− DupB) which includes a microsatellite (RS3). RS3 has been linked with variation in levels of social bonding, potentially explaining part of the interspecies behavioral differences found in bonobos, chimpanzees and humans. To date, results for bonobos have been based on small sample sizes. Our results confirmed that there is no DupB deletion in bonobos with a sample size comprising approximately 90% of the captive founder population, whereas in chimpanzees the deletion of DupB had the highest frequency. Because of the higher frequency of DupB alleles in our bonobo population, we suggest that the presence of this microsatellite may partly reflect documented differences in levels of sociability found in bonobos and chimpanzees. PMID:25405348

A framework based on 2-D Taylor expansion for quantifying the impacts of subpixel reflectance variance and covariance on cloud optical thickness and effective radius retrievals based on the bispectral method

NASA Astrophysics Data System (ADS)

Zhang, Z.; Werner, F.; Cho, H.-M.; Wind, G.; Platnick, S.; Ackerman, A. S.; Di Girolamo, L.; Marshak, A.; Meyer, K.

2016-06-01

The bispectral method retrieves cloud optical thickness (τ) and cloud droplet effective radius (re) simultaneously from a pair of cloud reflectance observations, one in a visible or near-infrared (VIS/NIR) band and the other in a shortwave infrared (SWIR) band. A cloudy pixel is usually assumed to be horizontally homogeneous in the retrieval. Ignoring subpixel variations of cloud reflectances can lead to a significant bias in the retrieved τ and re. In the literature, the retrievals of τ and re are often assumed to be independent and considered separately when investigating the impact of subpixel cloud reflectance variations on the bispectral method. As a result, the impact on τ is contributed only by the subpixel variation of VIS/NIR band reflectance and the impact on re only by the subpixel variation of SWIR band reflectance. In our new framework, we use the Taylor expansion of a two-variable function to understand and quantify the impacts of subpixel variances of VIS/NIR and SWIR cloud reflectances and their covariance on the τ and re retrievals. This framework takes into account the fact that the retrievals are determined by both VIS/NIR and SWIR band observations in a mutually dependent way. In comparison with previous studies, it provides a more comprehensive understanding of how subpixel cloud reflectance variations impact the τ and re retrievals based on the bispectral method. In particular, our framework provides a mathematical explanation of how the subpixel variation in VIS/NIR band influences the re retrieval and why it can sometimes outweigh the influence of variations in the SWIR band and dominate the error in re retrievals, leading to a potential contribution of positive bias to the re retrieval. We test our framework using synthetic cloud fields from a large-eddy simulation and real observations from Moderate Resolution Imaging Spectroradiometer. The predicted results based on our framework agree very well with the numerical simulations. Our framework can be used to estimate the retrieval uncertainty from subpixel reflectance variations in operational satellite cloud products and to help understand the differences in τ and re retrievals between two instruments.

A Framework Based on 2-D Taylor Expansion for Quantifying the Impacts of Sub-Pixel Reflectance Variance and Covariance on Cloud Optical Thickness and Effective Radius Retrievals Based on the Bi-Spectral Method

NASA Technical Reports Server (NTRS)

Zhang, Z.; Werner, F.; Cho, H. -M.; Wind, G.; Platnick, S.; Ackerman, A. S.; Di Girolamo, L.; Marshak, A.; Meyer, Kerry

2016-01-01

The bi-spectral method retrieves cloud optical thickness and cloud droplet effective radius simultaneously from a pair of cloud reflectance observations, one in a visible or near-infrared (VISNIR) band and the other in a shortwave infrared (SWIR) band. A cloudy pixel is usually assumed to be horizontally homogeneous in the retrieval. Ignoring sub-pixel variations of cloud reflectances can lead to a significant bias in the retrieved and re. In the literature, the retrievals of and re are often assumed to be independent and considered separately when investigating the impact of sub-pixel cloud reflectance variations on the bi-spectral method. As a result, the impact on is contributed only by the sub-pixel variation of VISNIR band reflectance and the impact on re only by the sub-pixel variation of SWIR band reflectance. In our new framework, we use the Taylor expansion of a two-variable function to understand and quantify the impacts of sub-pixel variances of VISNIR and SWIR cloud reflectances and their covariance on the and re retrievals. This framework takes into account the fact that the retrievals are determined by both VISNIR and SWIR band observations in a mutually dependent way. In comparison with previous studies, it provides a more comprehensive understanding of how sub-pixel cloud reflectance variations impact the and re retrievals based on the bi-spectral method. In particular, our framework provides a mathematical explanation of how the sub-pixel variation in VISNIR band influences the re retrieval and why it can sometimes outweigh the influence of variations in the SWIR band and dominate the error in re retrievals, leading to a potential contribution of positive bias to the re retrieval. We test our framework using synthetic cloud fields from a large-eddy simulation and real observations from Moderate Resolution Imaging Spectroradiometer. The predicted results based on our framework agree very well with the numerical simulations. Our framework can be used to estimate the retrieval uncertainty from sub-pixel reflectance variations in operational satellite cloud products and to help understand the differences in and re retrievals between two instruments.

A Framework Based on 2-D Taylor Expansion for Quantifying the Impacts of Subpixel Reflectance Variance and Covariance on Cloud Optical Thickness and Effective Radius Retrievals Based on the Bispectral Method

NASA Technical Reports Server (NTRS)

Zhang, Z.; Werner, F.; Cho, H.-M.; Wind, G.; Platnick, S.; Ackerman, A. S.; Di Girolamo, L.; Marshak, A.; Meyer, K.

2016-01-01

The bispectral method retrieves cloud optical thickness (t) and cloud droplet effective radius (re) simultaneously from a pair of cloud reflectance observations, one in a visible or near-infrared (VIS/NIR) band and the other in a shortwave infrared (SWIR) band. A cloudy pixel is usually assumed to be horizontally homogeneous in the retrieval. Ignoring subpixel variations of cloud reflectances can lead to a significant bias in the retrieved t and re. In the literature, the retrievals of t and re are often assumed to be independent and considered separately when investigating the impact of subpixel cloud reflectance variations on the bispectral method. As a result, the impact on t is contributed only by the subpixel variation of VIS/NIR band reflectance and the impact on re only by the subpixel variation of SWIR band reflectance. In our new framework, we use the Taylor expansion of a two-variable function to understand and quantify the impacts of subpixel variances of VIS/NIR and SWIR cloud reflectances and their covariance on the t and re retrievals. This framework takes into account the fact that the retrievals are determined by both VIS/NIR and SWIR band observations in a mutually dependent way. In comparison with previous studies, it provides a more comprehensive understanding of how subpixel cloud reflectance variations impact the t and re retrievals based on the bispectral method. In particular, our framework provides a mathematical explanation of how the subpixel variation in VIS/NIR band influences the re retrieval and why it can sometimes outweigh the influence of variations in the SWIR band and dominate the error in re retrievals, leading to a potential contribution of positive bias to the re retrieval. We test our framework using synthetic cloud fields from a large-eddy simulation and real observations from Moderate Resolution Imaging Spectroradiometer. The predicted results based on our framework agree very well with the numerical simulations. Our framework can be used to estimate the retrieval uncertainty from subpixel reflectance variations in operational satellite cloud products and to help understand the differences in t and re retrievals between two instruments.

Integrating national surveys to estimate small area variations in poor health and limiting long-term illness in Great Britain.

PubMed

Moon, Graham; Aitken, Grant; Taylor, Joanna; Twigg, Liz

2017-08-28

This study aims to address, for the first time, the challenges of constructing small area estimates of health status using linked national surveys. The study also seeks to assess the concordance of these small area estimates with data from national censuses. Population level health status in England, Scotland and Wales. A linked integrated dataset of 23 374 survey respondents (16+ years) from the 2011 waves of the Health Survey for England (n=8603), the Scottish Health Survey (n=7537) and the Welsh Health Survey (n=7234). Population prevalence of poorer self-rated health and limiting long-term illness. A multilevel small area estimation modelling approach was used to estimate prevalence of these outcomes for middle super output areas in England and Wales and intermediate zones in Scotland. The estimates were then compared with matched measures from the contemporaneous 2011 UK Census. There was a strong positive association between the small area estimates and matched census measures for all three countries for both poorer self-rated health (r=0.828, 95% CI 0.821 to 0.834) and limiting long-term illness (r=0.831, 95% CI 0.824 to 0.837), although systematic differences were evident, and small area estimation tended to indicate higher prevalences than census data. Despite strong concordance, variations in the small area prevalences of poorer self-rated health and limiting long-term illness evident in census data cannot be replicated perfectly using small area estimation with linked national surveys. This reflects a lack of harmonisation between surveys over question wording and design. The nature of small area estimates as 'expected values' also needs to be better understood. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2017. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

Using Field Measurements to Assess Aging of Self-Cleaning High-Reflectance Paint

NASA Astrophysics Data System (ADS)

Takebayashi, Hideki; Tanabe, Junichiro; Aoyama, Taizo; Sonoda, Takeshi; Nakanishi, Yasushi

2017-08-01

Continuous field measurements were used to evaluate the aging of solar reflectance on self-cleaning coatings for roofs in comparison with conventional coatings that have no self-cleaning function. Solar reflectance on self-cleaning coatings decreases by about 6 % per year with annual variations, due to the adhesion of dirt. On the other hand, solar reflectance on conventional coatings greatly decreases, by approximately 18 % within four months of the coating's application, due to the adhesion of dirt. Then, it gradually recovers at a rate of about 4 % per year, with annual variations, due to degradation of the coating. It is due to degradation of the conventional coating that the difference of solar reflectance between the self-cleaning coating and the conventional coating becomes almost zero in two years. Both the adhesion of dirt and coating degradation by chalking affect the temporal change of solar reflectance with annual variation.

Analysis of Specular Reflections Off Geostationary Satellites

NASA Astrophysics Data System (ADS)

Jolley, A.

2016-09-01

Many photometric studies of artificial satellites have attempted to define procedures that minimise the size of datasets required to infer information about satellites. However, it is unclear whether deliberately limiting the size of datasets significantly reduces the potential for information to be derived from them. In 2013 an experiment was conducted using a 14 inch Celestron CG-14 telescope to gain multiple night-long, high temporal resolution datasets of six geostationary satellites [1]. This experiment produced evidence of complex variations in the spectral energy distribution (SED) of reflections off satellite surface materials, particularly during specular reflections. Importantly, specific features relating to the SED variations could only be detected with high temporal resolution data. An update is provided regarding the nature of SED and colour variations during specular reflections, including how some of the variables involved contribute to these variations. Results show that care must be taken when comparing observed spectra to a spectral library for the purpose of material identification; a spectral library that uses wavelength as the only variable will be unable to capture changes that occur to a material's reflected spectra with changing illumination and observation geometry. Conversely, colour variations with changing illumination and observation geometry might provide an alternative means of determining material types.

Generation and emplacement of shear-related highly mobile crustal melts: the synkinematic leucogranites from the Variscan Tormes Dome, Western Spain

NASA Astrophysics Data System (ADS)

López-Moro, Francisco Javier; López-Plaza, Miguel; Romer, Rolf L.

2012-07-01

The Tormes dome consists of S-type granites that intruded into Ordovician augen gneisses and Neoproterozoic-Lower Cambrian metapelites/metagreywackes at different extents of migmatization. S-type granites are mainly equigranular two-mica granites, occurring as: (1) enclave-laden subvertical feeder dykes, (2) small external sill-like bodies with size and shape relations indicative for self-similar pluton growth, and (3) as large pluton bodies, emplaced at higher levels than the external ones. These magmas were highly mobile as it is inferred from the high contents of fluxing components, the disintegration and alignment of pelitic xenoliths in feeder dykes and at the bottom of some sill-like bodies. Field relations relate this 311 Ma magmatism (U-Pb monazite) to the regional shearing of the D3 Variscan event. Partial melting modeling and the relatively high estimated liquidus temperatures indicate biotite-dehydration partial melting (800-840°C and 400-650 MPa) rather than water-fluxed melting, implying that there was no partial melting triggered by externally derived fluids in the shear zones. Instead, the subvertical shear zones favored extraction of melts that formed during the regional migmatization event around 320 Ma. Nd isotope variation among the granites might reflect disequilibrium partial melting or different protoliths. Mass-balance and trace element partial melting modeling strongly suggest two kinds of fertile crustal protoliths: augen gneisses and metapelites. Slight compositional variation among the leucogranites does not reflect different extent of protolith melting but is related to a small amount of fractional crystallization (<13% for the equigranular granites), which is generally more pronounced in shallower batholitic leucogranites than in the small and homogeneous sill-like bodies. The lower extent of fractional crystallization and the higher-pressure emplacement conditions of the sill-like bodies support a more restricted movement through the crust than for batholitic leucogranites.

NOAA AVHRR Land Surface Albedo Algorithm Development

NASA Technical Reports Server (NTRS)

Toll, D. L.; Shirey, D.; Kimes, D. S.

1997-01-01

The primary objective of this research is to develop a surface albedo model for the National Oceanic and Atmospheric Administration (NOAA) Advanced Very High Resolution Radiometer (AVHRR). The primary test site is the Konza prairie, Kansas (U.S.A.), used by the International Satellite Land Surface Climatology Project (ISLSCP) in the First ISLSCP Field Experiment (FIFE). In this research, high spectral resolution field spectrometer data was analyzed to simulate AVHRR wavebands and to derive surface albedos. Development of a surface albedo algorithm was completed by analysing a combination of satellite, field spectrometer, and ancillary data. Estimated albedos from the field spectrometer data were compared to reference albedos derived using pyranometer data. Variations from surface anisotropy of reflected solar radiation were found to be the most significant albedo-related error. Additional error or sensitivity came from estimation of a shortwave mid-IR reflectance (1.3-4.0 micro-m) using the AVHRR red and near-IR bands. Errors caused by the use of AVHRR spectral reflectance to estimate both a total visible (0.4-0.7 micro-m) and near-IR (0.7-1.3 micro-m) reflectance were small. The solar spectral integration, using the derived ultraviolet, visible, near-IR and SW mid-IR reflectivities, was not sensitive to many clear-sky changes in atmospheric properties and illumination conditions.

The low-iron, reduced surface of Mercury as seen in spectral reflectance by MESSENGER

NASA Astrophysics Data System (ADS)

Izenberg, Noam R.; Klima, Rachel L.; Murchie, Scott L.; Blewett, David T.; Holsclaw, Gregory M.; McClintock, William E.; Malaret, Erick; Mauceri, Calogero; Vilas, Faith; Sprague, Ann L.; Helbert, Jörn; Domingue, Deborah L.; Head, James W.; Goudge, Timothy A.; Solomon, Sean C.; Hibbitts, Charles A.; Dyar, M. Darby

2014-01-01

The MESSENGER spacecraft's Mercury Atmospheric and Surface Composition Spectrometer (MASCS) obtained more than 1.6 million reflectance spectra of Mercury's surface from near-ultraviolet to near-infrared wavelengths during the first year of orbital operations. A global analysis of spectra in the wavelength range 300-1450 nm shows little regional variation in absolute reflectance or spectral slopes and a lack of mineralogically diagnostic absorptions. In particular, reflectance spectra show no clear evidence for an absorption band centered near 1 μm that would be associated with the presence of ferrous iron in silicates. There is, however, evidence for an ultraviolet absorption possibly consistent with a very low iron content (2-3 wt% FeO or less) in surface silicates and for the presence of small amounts of metallic iron or other opaque minerals in the form of nano- or micrometer-sized particles. These findings are consistent with MESSENGER X-ray and gamma-ray measurements of Mercury's surface iron abundance. Although X-ray and gamma-ray observations indicate higher than expected quantities of sulfur on the surface, reflectance spectra show no absorption bands diagnostic of sulfide minerals. Whereas there is strong evidence of water ice in permanently shadowed craters near Mercury's poles, MASCS spectra provide no evidence for hydroxylated materials near permanently shadowed craters.

Use of Borehole-Radar Methods to Monitor a Steam-Enhanced Remediation Pilot Study at a Quarry at the Former Loring Air Force Base, Maine

USGS Publications Warehouse

Gregoire, Colette; Joesten, Peter K.; Lane, John W.

2007-01-01

Single-hole radar reflection and crosshole radar tomography surveys were used in conjunction with conventional borehole-geophysical methods to evaluate the effectiveness of borehole-radar methods for monitoring the movement of steam and heat through fractured bedrock. The U.S. Geological Survey, in cooperation with U.S. Environmental Protection Agency (USEPA), conducted surveys in an abandoned limestone quarry at the former Loring Air Force Base during a field-scale, steam-enhanced remediation (SER) pilot project conducted by the USEPA, the U.S. Air Force, and the Maine Department of Environmental Protection to study the viability of SER to remediate non-aqueous phase liquid contamination in fractured bedrock. Numerical modeling and field experiments indicate that borehole-radar methods have the potential to monitor the presence of steam and to measure large temperature changes in the limestone matrix during SER operations. Based on modeling results, the replacement of water by steam in fractures should produce a decrease in radar reflectivity (amplitude of the reflected wave) by a factor of 10 and a change in reflection polarity. In addition, heating the limestone matrix should increase the bulk electrical conductivity and decrease the bulk dielectric permittivity. These changes result in an increase in radar attenuation and an increase in radar-wave propagation velocity, respectively. Single-hole radar reflection and crosshole radar tomography data were collected in two boreholes using 100-megahertz antennas before the start of steam injection, about 10 days after the steam injection began, and 2 months later, near the end of the injection. Fluid temperature logs show that the temperature of the fluid in the boreholes increased by 10?C (degrees Celsius) in one borehole and 40?C in the other; maximum temperatures were measured near the bottom of the boreholes. The results of the numerical modeling were used to interpret the borehole-radar data. Analyses of the single-hole radar reflection data showed almost no indication that steam replaced water in fractures near the boreholes because (1) no change of polarity was observed in the radar reflections; (2) variations in the measured traveltimes were unsubstantial; and (3) most of the observed decreases in reflectivity were too small to have resulted from the replacement of water by steam. Analyses of the crosshole radar tomography data also support the conclusion that steam did not replace water in the fractures around the boreholes because traveltime-difference and attenuation-difference tomograms showed only small decreases in velocity and small increases in attenuation accompanying the steam injection. The radar data are consistent with an increase in the conductivity of the limestone as a result of heating of the limestone matrix near the boreholes. Single-hole radar reflection data collected near the end of the steam injection near the bottom of the borehole with the largest temperature increase showed substantial attenuation. Also, reflector analysis showed small decreases in the amplitudes of radar-wave reflections in data collected before injection and data collected near the end of the collection period. In the crosshole radar tomography data, decreases in velocity and small increases in attenuation also are consistent with temperature increases in the matrix.

Modelling multiple hospital outcomes: the impact of small area and primary care practice variation

PubMed Central

Congdon, Peter

2006-01-01

Background: Appropriate management of care – for example, avoiding unnecessary attendances at, or admissions to, hospital emergency units when they could be handled in primary care – is an important part of health strategy. However, some variations in these outcomes could be due to genuine variations in health need. This paper proposes a new method of explaining variations in hospital utilisation across small areas and the general practices (GPs) responsible for patient primary care. By controlling for the influence of true need on such variations, one may identify remaining sources of excess emergency attendances and admissions, both at area and practice level, that may be related to the quality, resourcing or organisation of care. The present paper accordingly develops a methodology that recognises the interplay between population mix factors (health need) and primary care factors (e.g. referral thresholds), that allows for unobserved influences on hospitalisation usage, and that also reflects interdependence between hospital outcomes. A case study considers relativities in attendance and admission rates at a North London hospital involving 149 small areas and 53 GP practices. Results: A fixed effects model shows variations in attendances and admissions are significantly related (positively) to area and practice need, and nursing home patients, and related (negatively) to primary care access and distance of patient homes from the hospital. Modelling the impact of known factors alone is not sufficient to produce a satisfactory fit to the observations, and random effects at area and practice level are needed to improve fit and account for overdispersion. Conclusion: The case study finds variation in attendance and admission rates across areas and practices after controlling for need, and remaining differences between practices may be attributable to referral behaviour unrelated to need, or to staffing, resourcing, and access issues. In managerial terms, the analysis points to the utility of formal statistical analysis of hospitalisation rates as a prelude to non-statistical investigation of primary care resourcing and organisation. For example, there may be implications for the location of staff involved in community management of chronic conditions; health managers may also investigate whether some practices have unusual populations (homeless, asylum seekers, students) that explain different hospital use patterns. PMID:17109747

Directional emissivity and reflectance: dependence on emergence angle

NASA Astrophysics Data System (ADS)

Maturilli, Alessandro; Helbert, Jörn

2017-04-01

Dependence of laboratory measured emissivity spectra from the emergence angle is a subject that still needs a lot of investigations to be fully understood. Most of the previous work is based on reflectance measurements in the VIS-NIR spectral region and on emissivity measurements of flat, solid surfaces (mainly metals), which are not directly applicable to the analysis of remote sensing data. Small bodies in particular (c.f. asteroids Itokawa and 1999JU3, the respective targets of JAXA Hayabusa and Hayabusa 2 missions) have a very irregular surface; hence the spectra from those rough surfaces are difficult to compare with laboratory spectra, where the observing geometry is always close to "nadir". At the Planetary Emissivity Laboratory (PEL) of the German Aerospace Center (DLR) we have set-up a series of spectral measurements to investigate this problem in the 1 - 16 µm spectral region. We measured the emissivity for two asteroid analog materials (meteorite Millbillillie and a synthetic enstatite) in vacuum and under purged air, at surface temperature of 100°C, for emergence angles of 0°, 5°, 10°, 20°, 30°, 40°, 50°, and 60°. Emissivity of a serpentinite slab, already used as calibration target for the MARA instrument on Hayabusa 2 MASCOT lander, and for the Thermal Infrared Imager (TIR) spectrometer on Hayabusa 2 orbiter was measured under the same conditions. Additionally a second basalt slab was measured. Both slabs were not measured at 5° inclination. Complementary reflectance measurements of the four samples were taken. For all the samples measured, we found that for calibrated emissivity, significant variations from values obtained at nadir (0° emergence angle) appear only for emergence angles ≥ 40°. Reflectance measurements confirmed this finding, showing the same trend of variations.

Montana: Filling A Gap In The GeoSwath

NASA Astrophysics Data System (ADS)

Jensen, B.; Keller, G. R.

2010-12-01

The proposed Geoswath transect crosses southern Montana, and the swath of MT stations deployed as part of EarthScope cover all but a small portion of eastern Montana. USArray broadband stations of course cover the entire region. However, modern controlled-source seismic data are very sparse in this large state, and most of it dates from the 1960’s. In this study, we have taken an integrated approach to analyzing lithospheric structure by compiling and analyzing all the public domain geophysical results and data we could locate and combining them with industry seismic reflection data that were released for our study. This information was employed to interpret a suite of filtered regional maps gravity and magnetic data and to construct integrated gravity models of long profiles that reflect crustal structure and deeper features within the upper mantle of the region. Our analysis included previous seismic refraction/reflection results, EarthScope Automated Array receiver functions, new 2D seismic reflection data, seismic tomography, potential field data, and previous geological studies in order to investigate structural and compositional variations within the crust and upper mantle. Our targets included Precambrian structure and tectonics, Sevier and Laramide features, and Late Cenozoic extension. Our main conclusions are: 1) Receiver function and seismic refraction/reflection crustal thickness estimates show a W-E crustal thickening with thicknesses greater than 50 km in the central and eastern Montana; 2) Seismic reflection data reveal Laramide basement-involved structures as far east as central Montana. These structures also show that the western edge of the North American craton was affected by late Mesozoic to Cenozoic deformation and has thus been decratonized; 3) Potential field filtering methods revealed regional trends and tectonic province outlines. The tilt derivative of the reduced-to-pole magnetic data enhances crystalline basement patterns that reflect tectonic province boundary locations. The upward continuation of the complete Bouguer anomaly grid revealed a gravity high in the northeast portion of the region, which is interpreted to be associated with density variations in the upper mantle. This interpretation is consistent with seismic tomography that reveals a “wedge-like” zone fast material beneath the craton in this region.

Elevational Gradients in β-Diversity Reflect Variation in the Strength of Local Community Assembly Mechanisms across Spatial Scales

PubMed Central

Tello, J. Sebastián; Myers, Jonathan A.; Macía, Manuel J.; Fuentes, Alfredo F.; Cayola, Leslie; Arellano, Gabriel; Loza, M. Isabel; Torrez, Vania; Cornejo, Maritza; Miranda, Tatiana B.; Jørgensen, Peter M.

2015-01-01

Despite long-standing interest in elevational-diversity gradients, little is known about the processes that cause changes in the compositional variation of communities (β-diversity) across elevations. Recent studies have suggested that β-diversity gradients are driven by variation in species pools, rather than by variation in the strength of local community assembly mechanisms such as dispersal limitation, environmental filtering, or local biotic interactions. However, tests of this hypothesis have been limited to very small spatial scales that limit inferences about how the relative importance of assembly mechanisms may change across spatial scales. Here, we test the hypothesis that scale-dependent community assembly mechanisms shape biogeographic β-diversity gradients using one of the most well-characterized elevational gradients of tropical plant diversity. Using an extensive dataset on woody plant distributions along a 4,000-m elevational gradient in the Bolivian Andes, we compared observed patterns of β-diversity to null-model expectations. β-deviations (standardized differences from null values) were used to measure the relative effects of local community assembly mechanisms after removing sampling effects caused by variation in species pools. To test for scale-dependency, we compared elevational gradients at two contrasting spatial scales that differed in the size of local assemblages and regions by at least an order of magnitude. Elevational gradients in β-diversity persisted after accounting for regional variation in species pools. Moreover, the elevational gradient in β-deviations changed with spatial scale. At small scales, local assembly mechanisms were detectable, but variation in species pools accounted for most of the elevational gradient in β-diversity. At large spatial scales, in contrast, local assembly mechanisms were a dominant force driving changes in β-diversity. In contrast to the hypothesis that variation in species pools alone drives β-diversity gradients, we show that local community assembly mechanisms contribute strongly to systematic changes in β-diversity across elevations. We conclude that scale-dependent variation in community assembly mechanisms underlies these iconic gradients in global biodiversity. PMID:25803846

Differential Cued-Stroop Performance in Cognitively Asymptomatic Older Adults with Biomarker-Identified Risk for Alzheimer's Disease: A Pilot Study.

PubMed

Patten, Ryan Van; Fagan, Anne M; Kaufman, David A S

2018-04-04

There exists a need for more sensitive measures, capable of detecting subtle cognitive decline due to Alzheimer's disease. To advance the literature in Alzheimer's disease by demonstrating that performance on a cued-Stroop task is impacted by preclinical Alzheimer's disease neuropathology. Twenty-nine cognitively asymptomatic older adults completed a computerized, cued-Stroop task in which accuracy rates and intraindividual variability in reaction times were the outcomes of interest. Cerebrospinal fluid biomarkers of Aβ42 and tau were measured and participants were then grouped according to a published p-tau/Aβ42 cutoff reflecting risk for Alzheimer's disease (preclinical Alzheimer's disease = 14; control = 15). ANOVAs indicated that accuracy rates did not differ between the groups but 4-second delay incongruent color-naming Stroop coefficient of variation reaction times were higher in the preclinical Alzheimer's disease group compared to the control group, reflecting increased within-person variability. Moreover, partial correlations showed no relationships between cerebrospinal fluid biomarkers and accuracy rates. However, increases in coefficient of variation reaction times correlated with decreased Aβ42 and increases in p-tau and the p-tau/Aβ42 ratio. Results supported the ability of the computerized, cued-Stroop task to detect subtle Alzheimer's disease neuropathology using a small cohort of cognitively asymptomatic older adults. The ongoing measurement of cued-Stroop coefficient of variation reaction times has both scientific and clinical utility in preclinical Alzheimer's disease. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Influence of Aerosols And Surface Reflectance On NO2 Retrieval Over China From 2005 to 2015

NASA Astrophysics Data System (ADS)

Liu, M.; Lin, J.

2016-12-01

Satellite observation is a powerful way to analysis annual and seasonal variations of nitrogen dioxide (NO2). However, much retrieval of vertical column densities (VCDs) of normally do not explicitly account for aerosol optical effects and surface reflectance anisotropy that vary with space and time. In traditional retrieval, aerosols' effects are often considered as cloud. However, China has complicated aerosols type and aerosol loading. Their optical properties may be very different from the cloud. Furthermore, China has undergone big changes in land use type in recent 10 years. Traditional climatology surface reflectance data may not have representation. In order to study spatial-temporal variation of and influences of these two factors on variations and trends, we use an improved retrieval method of VCDs over China, called the POMINO, based on measurements from the Ozone Monitoring Instrument (OMI), and we compare the results of without aerosol, without surface reflectance treatments and without both to the original POMINO product from 2005 to 2015. Furthermore, we will study correspondent spatial-temporal variations of aerosols, represented by MODIS aerosol optical depth (AOD) data and CALIOP extinction data; surface reflectance, represented by MODIS bidirectional reflectance distribution function (BRDF) data.

Sequence Polymorphisms and Structural Variations among Four Grapevine (Vitis vinifera L.) Cultivars Representing Sardinian Agriculture

PubMed Central

Mercenaro, Luca; Nieddu, Giovanni; Porceddu, Andrea; Pezzotti, Mario; Camiolo, Salvatore

2017-01-01

The genetic diversity among grapevine (Vitis vinifera L.) cultivars that underlies differences in agronomic performance and wine quality reflects the accumulation of single nucleotide polymorphisms (SNPs) and small indels as well as larger genomic variations. A combination of high throughput sequencing and mapping against the grapevine reference genome allows the creation of comprehensive sequence variation maps. We used next generation sequencing and bioinformatics to generate an inventory of SNPs and small indels in four widely cultivated Sardinian grape cultivars (Bovale sardo, Cannonau, Carignano and Vermentino). More than 3,200,000 SNPs were identified with high statistical confidence. Some of the SNPs caused the appearance of premature stop codons and thus identified putative pseudogenes. The analysis of SNP distribution along chromosomes led to the identification of large genomic regions with uninterrupted series of homozygous SNPs. We used a digital comparative genomic hybridization approach to identify 6526 genomic regions with significant differences in copy number among the four cultivars compared to the reference sequence, including 81 regions shared between all four cultivars and 4953 specific to single cultivars (representing 1.2 and 75.9% of total copy number variation, respectively). Reads mapping at a distance that was not compatible with the insert size were used to identify a dataset of putative large deletions with cultivar Cannonau revealing the highest number. The analysis of genes mapping to these regions provided a list of candidates that may explain some of the phenotypic differences among the Bovale sardo, Cannonau, Carignano and Vermentino cultivars. PMID:28775732

Vertical-Cavity Surface-Emitting Lasers: Design, Fabrication and Characterization

NASA Astrophysics Data System (ADS)

Geels, Randall Scott

The theory, design, fabrication, and testing of vertical-cavity surface-emitting lasers (VCSELs) is explored in depth. The design of the distributed Bragg reflector (DBR) mirrors is thoroughly treated and both analytic and numerical approaches for computing the reflectivity are covered. The electrical properties of the DBR mirrors are also considered and graded interfaces are found to be critical in reducing the series voltage drop in the mirrors. Thickness variations due to growth rate uncertainties are considered and the permissible thickness inaccuracies are discussed. Layer thickness variations of several percent can be tolerated without large changes in the threshold current. The growth of VCSELs by molecular beam epitaxy (MBE) is described in detail as is the device processing technology for broad area as well as small area devices. Results from numerous devices are reported. Broad area in-plane lasers were used to characterize the material and determine the internal parameters. Broad area VCSELs were fabricated to determine the characteristics of the VCSEL cavity. Small area VCSELs were fabricated and extensively tested. Measured and derived parameters from small area devices include: threshold current (~0.7 mA), peak output power (>3 mW), maximum operation temperature (>110^ circC), output power at 100^ circC (~0.4 mW), and linewidth (85 MHz). The near field, far field, and polarization characteristics were also measured.

Centennial-scale winter climate variability over the last two millennia in the northern Gulf of Mexico based on paired δ18O and Mg/Ca in Globorotalia truncatulinoides

NASA Astrophysics Data System (ADS)

Fortiz, V.; Thirumalai, K.; Richey, J. N.; Quinn, T. M.

2014-12-01

We present a replicated record of paired foraminiferal δ18O and Mg/Ca variations in multi-cores collected from the Garrison Basin (26º43'N, 93º55'W) in the northern Gulf of Mexico (GOM). Using δ18O (sea surface temperature, SST; sea surface salinity, SSS proxy) and Mg/Ca (SST proxy) variations in non-encrusted planktic foraminifer Globorotalia truncatulinoides we produce time series spanning the last two millennia that is characterized by centennial-scale climate variability. We interpret geochemical variations in G. truncatulinoides to reflect winter climate variability because data from a sediment trap, located ~350 km east of the core site, reveal that annual flux of G. truncatulinoides is heavily weighted towards winter (peak production in January-February; Spear et al., 2011). Similar centennial-scale variability is also observed in the foraminiferal geochemistry of Globigerinoides ruber in the same multi-cores, which likely reflect mean annual climate variations. Our replicated results and comparisons to other SST reconstructions from the region lend confidence that the northern GOM surface ocean underwent large, centennial-scale variability, most likely dominated by changes in winter climate. This variability occurred in a time period where climate forcing is small and background conditions are similar to pre-industrial times. References: Spear, J.W.; Poore, R.Z., and Quinn, T.M., 2011, Globorotalia truncatulinoides (dextral) Mg/Ca as a proxy for Gulf of Mexico winter mixed-layer temperature: Evidence from a sediment trap in the northern Gulf of Mexico. Marine Micropaleontology, 80, 53-61.

On the role of block copolymer additives for calcium carbonate crystallization: small angle neutron scattering investigation by applying contrast variation.

PubMed

Endo, Hitoshi; Schwahn, Dietmar; Cölfen, Helmut

2004-05-15

The role of the double-hydrophilic block copolymer poly(ethylen glycol)-block-poly(methacrylic acid) (PEG-b-PMAA) on the morphogenesis of calcium carbonate (CaCO3) was studied by applying the contrast variation small angle neutron scattering technique. The morphology and size of CaCO3 crystals is strongly affected by the addition of PEG-b-PMAA. In order to determine the partial scattering functions of the polymer and CaCO3 mineral, we developed both an experimental and theoretical approach with a sophisticated method of their determination from the scattering intensity. Partial scattering functions give detailed information for each component. In particular, the partial scattering function of the polymer, Spp, shows a monotonic slope with Q(-2 to -3) where the scattering vector Q is low (Q < 0.01 Angstrom(-1)), which is a clear evidence that the polymer within the CaCO3 mineral has a mass fractal dimension. The other partial scattering functions reflected the geometry of the CaCO3 particles or the "interaction" of polymer and CaCO3 on a microscopic scale, which leads to a coherent view with Spp.

Engineering integrated photonics for heralded quantum gates

NASA Astrophysics Data System (ADS)

Meany, Thomas; Biggerstaff, Devon N.; Broome, Matthew A.; Fedrizzi, Alessandro; Delanty, Michael; Steel, M. J.; Gilchrist, Alexei; Marshall, Graham D.; White, Andrew G.; Withford, Michael J.

2016-06-01

Scaling up linear-optics quantum computing will require multi-photon gates which are compact, phase-stable, exhibit excellent quantum interference, and have success heralded by the detection of ancillary photons. We investigate the design, fabrication and characterisation of the optimal known gate scheme which meets these requirements: the Knill controlled-Z gate, implemented in integrated laser-written waveguide arrays. We show device performance to be less sensitive to phase variations in the circuit than to small deviations in the coupler reflectivity, which are expected given the tolerance values of the fabrication method. The mode fidelity is also shown to be less sensitive to reflectivity and phase errors than the process fidelity. Our best device achieves a fidelity of 0.931 ± 0.001 with the ideal 4 × 4 unitary circuit and a process fidelity of 0.680 ± 0.005 with the ideal computational-basis process.

Optical and transport properties of dense liquid silica

DOE Office of Scientific and Technical Information (OSTI.GOV)

Qi, Tingting; Millot, Marius; Kraus, Richard G.

2015-06-15

Using density-functional-theory based molecular dynamics and the Kubo-Greenwood linear response theory, we evaluated the high-pressure equation of state and the optical and transport properties of quartz and fused silica shock-compressed to 2000 GPa. The computed Hugoniots and corresponding optical reflectivity values are in very good agreement with published data for quartz, and new data that we obtained on fused silica using magnetically launched flyer plate experiments. The rise of optical reflectivity upon shock compression appears to be primarily a temperature-driven mechanism, which is relatively insensitive to small density variation. We observed that the electrical conductivity does not display Drude-like frequencymore » dependence, especially at lower temperatures. In addition, the Wiedemann-Franz relation between electrical and thermal conductivities was found to be invalid. It suggests that even at three-fold compression, warm dense liquid silica on the Hugoniot curve is still far away from the degenerate limit.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pellicer-Porres, J., E-mail: Julio.Pellicer@uv.es; Segura, A.; Santamaría-Pérez, D.

We have measured high pressure α-quartz reflectance spectra in the mid infrared. We used single crystals, taking full profit of polarization. The quality of the spectra allows fitting the reflectance spectra. We have characterized the pressure evolution of E and A{sub 2} modes with increased precision, even in the spectral regions where they overlap. In addition, we have determined the TO-LO splitting of each mode. Some of the A{sub 2} modes show dramatic pressure variations of the LO-TO splitting, which cannot be explained only by changes in length and ionicity of individual bonds, requiring a new mechanism. We suggest thatmore » rotation of the SiO{sub 4} tetrahedra plays a fundamental role. We have also determined the evolution of the electronic dielectric constant under high pressure. We find that its pressure increment is mainly a volume effect, although the small increase in birefringence points to secondary changes associated to the electronic resonances.« less

Engineering integrated photonics for heralded quantum gates

PubMed Central

Meany, Thomas; Biggerstaff, Devon N.; Broome, Matthew A.; Fedrizzi, Alessandro; Delanty, Michael; Steel, M. J.; Gilchrist, Alexei; Marshall, Graham D.; White, Andrew G.; Withford, Michael J.

2016-01-01

Scaling up linear-optics quantum computing will require multi-photon gates which are compact, phase-stable, exhibit excellent quantum interference, and have success heralded by the detection of ancillary photons. We investigate the design, fabrication and characterisation of the optimal known gate scheme which meets these requirements: the Knill controlled-Z gate, implemented in integrated laser-written waveguide arrays. We show device performance to be less sensitive to phase variations in the circuit than to small deviations in the coupler reflectivity, which are expected given the tolerance values of the fabrication method. The mode fidelity is also shown to be less sensitive to reflectivity and phase errors than the process fidelity. Our best device achieves a fidelity of 0.931 ± 0.001 with the ideal 4 × 4 unitary circuit and a process fidelity of 0.680 ± 0.005 with the ideal computational-basis process. PMID:27282928

Engineering integrated photonics for heralded quantum gates.

PubMed

Meany, Thomas; Biggerstaff, Devon N; Broome, Matthew A; Fedrizzi, Alessandro; Delanty, Michael; Steel, M J; Gilchrist, Alexei; Marshall, Graham D; White, Andrew G; Withford, Michael J

2016-06-10

Scaling up linear-optics quantum computing will require multi-photon gates which are compact, phase-stable, exhibit excellent quantum interference, and have success heralded by the detection of ancillary photons. We investigate the design, fabrication and characterisation of the optimal known gate scheme which meets these requirements: the Knill controlled-Z gate, implemented in integrated laser-written waveguide arrays. We show device performance to be less sensitive to phase variations in the circuit than to small deviations in the coupler reflectivity, which are expected given the tolerance values of the fabrication method. The mode fidelity is also shown to be less sensitive to reflectivity and phase errors than the process fidelity. Our best device achieves a fidelity of 0.931 ± 0.001 with the ideal 4 × 4 unitary circuit and a process fidelity of 0.680 ± 0.005 with the ideal computational-basis process.

Calculated occultation profiles of Io and the hot spots

NASA Technical Reports Server (NTRS)

Mcewen, A. S.; Soderblom, L. A.; Matson, D. L.; Johnson, T. V.; Lunine, J. I.

1986-01-01

Occultations of Io by other Galilean satellites in 1985 provide a means to locate volcanic hot spots and to model their temperatures. The expected time variations in the integral reflected and emitted radiation of the occultations are computed as a function of wavelength (visual to 8.7 microns). The best current ephemerides were used to calculate the geometry of each event as viewed from earth. Visual reflectances were modeled from global mosaics of Io. Thermal emission from the hot spots was calculated from Voyager 1 IRIS observations and, for regions unobserved by IRIS, from a model based on the distribution of low-albedo features. The occultations may help determine (1) the location and temperature distribution of Loki; (2) the source(s) of excess emission in the region from long 50 deg to 200 deg and (3) the distribution of small, high-temperature sources.

Design and characterization of integrated components for SiN photonic quantum circuits.

PubMed

Poot, Menno; Schuck, Carsten; Ma, Xiao-Song; Guo, Xiang; Tang, Hong X

2016-04-04

The design, fabrication, and detailed calibration of essential building blocks towards fully integrated linear-optics quantum computation are discussed. Photonic devices are made from silicon nitride rib waveguides, where measurements on ring resonators show small propagation losses. Directional couplers are designed to be insensitive to fabrication variations. Their offset and coupling lengths are measured, as well as the phase difference between the transmitted and reflected light. With careful calibrations, the insertion loss of the directional couplers is found to be small. Finally, an integrated controlled-NOT circuit is characterized by measuring the transmission through different combinations of inputs and outputs. The gate fidelity for the CNOT operation with this circuit is estimated to be 99.81% after post selection. This high fidelity is due to our robust design, good fabrication reproducibility, and extensive characterizations.

Use of spectral analogy to evaluate canopy reflectance sensitivity to leaf optical property

NASA Technical Reports Server (NTRS)

Baret, Frederic; Vanderbilt, Vern C.; Steven, Michael D.; Jacquemoud, Stephane

1993-01-01

The spectral variation of canopy reflectance is mostly governed by the absorption properties of the elements, hence the leaves, since their intrinsic scattering properties show very little spectral variation. The relationship between canopy reflectance and leaf reflectance measured at the red edge over sugar beet canopies was used to simulate canopy reflectance from leaf reflectance spectra measured over the whole spectral domain. The results show that the spectral analogies found allows accurate reconstruction of canopy reflectance spectra. Explicit assumptions about the very low spectral variation of leaf intrinsic scattering properties are thus indirectly justified. The sensitivity of canopy reflectance (rho(sub c)) to leaf optical properties can then be investigated from concurrent spectral variations of canopy (delta rho(sub c)/delta lambda) and leaf reflectance (delta rho(sub l)/delta lambda): (delta rho(sub c))/(delta rho(sub l)) = ((delta rho(sub c))/(delta lambda) ((delta rho( sub l))/(delta lambda))(sup -1)). This expression is strictly valid only when the optical properties of the soil background or the other vegetation elements such as bark are either spectrally flat or do not contribute significantly to canopy reflectance. Simulations using the SAIL and PROSPECT models demonstrate that the sensitivity of canopy reflectance to leaf reflectance is significant for large vegetation cover fractions in spectral domains where absorption is low. In these conditions, multiple, scattering enhances the leaf absorption features by a factor that can be greater than 2.0. To override the limitations of the SAIL model for the description of the canopy architecture, we tested the previous findings on experimental data. Concurrent canopy and leaf reflectance spectra were measured for a range of sugar beet canopies. The results show good agreement with the theoretical findings. Conclusions are drawn about the applicability of these findings, with particular attention to the potential detectability of leaf biochemical composition from canopy reflectance sensed from space.

Digital photography provides a fast, reliable, and noninvasive method to estimate anthocyanin pigment concentration in reproductive and vegetative plant tissues.

PubMed

Del Valle, José C; Gallardo-López, Antonio; Buide, Mª Luisa; Whittall, Justen B; Narbona, Eduardo

2018-03-01

Anthocyanin pigments have become a model trait for evolutionary ecology as they often provide adaptive benefits for plants. Anthocyanins have been traditionally quantified biochemically or more recently using spectral reflectance. However, both methods require destructive sampling and can be labor intensive and challenging with small samples. Recent advances in digital photography and image processing make it the method of choice for measuring color in the wild. Here, we use digital images as a quick, noninvasive method to estimate relative anthocyanin concentrations in species exhibiting color variation. Using a consumer-level digital camera and a free image processing toolbox, we extracted RGB values from digital images to generate color indices. We tested petals, stems, pedicels, and calyces of six species, which contain different types of anthocyanin pigments and exhibit different pigmentation patterns. Color indices were assessed by their correlation to biochemically determined anthocyanin concentrations. For comparison, we also calculated color indices from spectral reflectance and tested the correlation with anthocyanin concentration. Indices perform differently depending on the nature of the color variation. For both digital images and spectral reflectance, the most accurate estimates of anthocyanin concentration emerge from anthocyanin content-chroma ratio, anthocyanin content-chroma basic, and strength of green indices. Color indices derived from both digital images and spectral reflectance strongly correlate with biochemically determined anthocyanin concentration; however, the estimates from digital images performed better than spectral reflectance in terms of r 2 and normalized root-mean-square error. This was particularly noticeable in a species with striped petals, but in the case of striped calyces, both methods showed a comparable relationship with anthocyanin concentration. Using digital images brings new opportunities to accurately quantify the anthocyanin concentrations in both floral and vegetative tissues. This method is efficient, completely noninvasive, applicable to both uniform and patterned color, and works with samples of any size.

Correction for reflected sky radiance in low-altitude coastal hyperspectral images.

PubMed

Kim, Minsu; Park, Joong Yong; Kopilevich, Yuri; Tuell, Grady; Philpot, William

2013-11-10

Low-altitude coastal hyperspectral imagery is sensitive to reflections of sky radiance at the water surface. Even in the absence of sun glint, and for a calm water surface, the wide range of viewing angles may result in pronounced, low-frequency variations of the reflected sky radiance across the scan line depending on the solar position. The variation in reflected sky radiance can be obscured by strong high-spatial-frequency sun glint and at high altitude by path radiance. However, at low altitudes, the low-spatial-frequency sky radiance effect is frequently significant and is not removed effectively by the typical corrections for sun glint. The reflected sky radiance from the water surface observed by a low-altitude sensor can be modeled in the first approximation as the sum of multiple-scattered Rayleigh path radiance and the single-scattered direct-solar-beam radiance by the aerosol in the lower atmosphere. The path radiance from zenith to the half field of view (FOV) of a typical airborne spectroradiometer has relatively minimal variation and its reflected radiance to detector array results in a flat base. Therefore the along-track variation is mostly contributed by the forward single-scattered solar-beam radiance. The scattered solar-beam radiances arrive at the water surface with different incident angles. Thus the reflected radiance received at the detector array corresponds to a certain scattering angle, and its variation is most effectively parameterized using the downward scattering angle (DSA) of the solar beam. Computation of the DSA must account for the roll, pitch, and heading of the platform and the viewing geometry of the sensor along with the solar ephemeris. Once the DSA image is calculated, the near-infrared (NIR) radiance from selected water scan lines are compared, and a relationship between DSA and NIR radiance is derived. We then apply the relationship to the entire DSA image to create an NIR reference image. Using the NIR reference image and an atmospheric spectral reflectance look-up table, the low spatial frequency variation of the water surface-reflected atmospheric contribution is removed.

High-Throughput Genetic Analysis and Combinatorial Chiral Separations Based on Capillary Electrophoresis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhong, Wenwan

2003-01-01

Capillary electrophoresis (CE) offers many advantages over conventional analytical methods, such as speed, simplicity, high resolution, low cost, and small sample consumption, especially for the separation of enantiomers. However, chiral method developments still can be time consuming and tedious. They designed a comprehensive enantioseparation protocol employing neutral and sulfated cyclodextrins as chiral selectors for common basic, neutral, and acidic compounds with a 96-capillary array system. By using only four judiciously chosen separation buffers, successful enantioseparations were achieved for 49 out of 54 test compounds spanning a large variety of pKs and structures. Therefore, unknown compounds can be screened in thismore » manner to identify optimal enantioselective conditions in just one rn. In addition to superior separation efficiency for small molecules, CE is also the most powerful technique for DNA separations. Using the same multiplexed capillary system with UV absorption detection, the sequence of a short DNA template can be acquired without any dye-labels. Two internal standards were utilized to adjust the migration time variations among capillaries, so that the four electropherograms for the A, T, C, G Sanger reactions can be aligned and base calling can be completed with a high level of confidence. the CE separation of DNA can be applied to study differential gene expression as well. Combined with pattern recognition techniques, small variations among electropherograms obtained by the separation of cDNA fragments produced from the total RNA samples of different human tissues can be revealed. These variations reflect the differences in total RNA expression among tissues. Thus, this Ce-based approach can serve as an alternative to the DNA array techniques in gene expression analysis.« less

Characteristic variations in reflectance of surface soils

NASA Technical Reports Server (NTRS)

Stoner, E. R.; Baumgardner, M. F. (Principal Investigator)

1982-01-01

Surface soil samples from a wide range of naturally occurring soils were obtained for the purpose of studying the characteristic variations in soil reflectance as these variations relate to other soil properties and soil classification. A total 485 soil samples from the U.S. and Brazil representing 30 suborders of the 10 orders of 'Soil Taxonomy' was examined. The spectral bidirectional reflectance factor was measured on uniformly moist soils over the 0.52 to 2.32 micron wavelength range with a spectroradiometer adapted for indoor use. Five distinct soil spectral reflectance curve forms were identified according to curve shape, the presence or absence of absorption bands, and the predominance of soil organic matter and iron oxide composition. These curve forms were further characterized according to generically homogeneous soil properties in a manner similar to the subdivisions at the suborder level of 'Soil Taxonomy'. Results indicate that spectroradiometric measurements of soil spectral bidirectional reflectance factor can be used to characterize soil reflectance in terms that are meaningful to soil classification, genesis, and survey.

Environmental responses, not species interactions, determine synchrony of dominant species in semiarid grasslands.

PubMed

Tredennick, Andrew T; de Mazancourt, Claire; Loreau, Michel; Adler, Peter B

2017-04-01

Temporal asynchrony among species helps diversity to stabilize ecosystem functioning, but identifying the mechanisms that determine synchrony remains a challenge. Here, we refine and test theory showing that synchrony depends on three factors: species responses to environmental variation, interspecific interactions, and demographic stochasticity. We then conduct simulation experiments with empirical population models to quantify the relative influence of these factors on the synchrony of dominant species in five semiarid grasslands. We found that the average synchrony of per capita growth rates, which can range from 0 (perfect asynchrony) to 1 (perfect synchrony), was higher when environmental variation was present (0.62) rather than absent (0.43). Removing interspecific interactions and demographic stochasticity had small effects on synchrony. For the dominant species in these plant communities, where species interactions and demographic stochasticity have little influence, synchrony reflects the covariance in species' responses to the environment. © 2017 by the Ecological Society of America.

MONITORING H{alpha} EMISSION AND CONTINUUM OF UXORs: RR Tauri

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bedell, Megan; Villaume, Alexa; Weiss, Lauren

2011-11-15

The Maria Mitchell Observatory, in collaboration with the Astrokolkhoz Observatory, started a program of photometric monitoring of UX Ori-type stars (UXORs) with narrowband interference filters (IFs; augmented with the traditional broadband filters) aimed at separating the H{alpha} emission variations from those of the continuum. We present the method of separation and the first results for RR Tau obtained in two seasons, each roughly 100 days long (2010 Winter-Spring and 2010 Fall-2011 Spring). We confirm the conclusion from previous studies that the H{alpha} emission in this star is less variable than the continuum. Although some correlation between the two is notmore » excluded, the amplitude of H{alpha} variations is much smaller (factors of 3-5) than that of the continuum. These results are compatible with Grinin's model of UXORs, which postulates the presence of small obscuring circumstellar clouds as the cause of the continuum fading, as well as the presence of a circumstellar reflection/emission nebula, larger than the star and the obscuring clouds, which is responsible for H{alpha} emission and the effect of the 'color reversal' in deep minima. However, the results of both our broadband and narrowband photometry indicate that the obscuration model may be insufficient to explain all of the observations. Disk accretion, the presence of stellar or (proto) planetary companion(s), as well as the intrinsic variations of the star, may contribute to the observed light variations. We argue, in particular, that the H{alpha} emission may be more closely correlated with the intrinsic variations of the star than with the much stronger observed variations caused by the cloud obscuration. If this hypothesis is correct, the close monitoring of H{alpha} emission with IFs, accessible to small-size telescopes, may become an important tool in studying the physical nature of the UXORs' central stars.« less

Fiber-Optic Pressure Sensor With Dynamic Demodulation Developed

NASA Technical Reports Server (NTRS)

Lekki, John D.

2002-01-01

Researchers at the NASA Glenn Research Center developed in-house a method to detect pressure fluctuations using a fiber-optic sensor and dynamic signal processing. This work was in support of the Intelligent Systems Controls and Operations project under NASA's Information Technology Base Research Program. We constructed an optical pressure sensor by attaching a fiber-optic Bragg grating to a flexible membrane and then adhering the membrane to one end of a small cylinder. The other end of the cylinder was left open and exposed to pressure variations from a pulsed air jet. These pressure variations flexed the membrane, inducing a strain in the fiber-optic grating. This strain was read out optically with a dynamic spectrometer to record changes in the wavelength of light reflected from the grating. The dynamic spectrometer was built in-house to detect very small wavelength shifts induced by the pressure fluctuations. The spectrometer is an unbalanced interferometer specifically designed for maximum sensitivity to wavelength shifts. An optimum pathlength difference, which was determined empirically, resulted in a 14-percent sensitivity improvement over theoretically predicted path-length differences. This difference is suspected to be from uncertainty about the spectral power difference of the signal reflected from the Bragg grating. The figure shows the output of the dynamic spectrometer as the sensor was exposed to a nominally 2-kPa peak-to-peak square-wave pressure fluctuation. Good tracking, sensitivity, and signal-to-noise ratios are evident even though the sensor was constructed as a proof-of-concept and was not optimized in any way. Therefore the fiber-optic Bragg grating, which is normally considered a good candidate as a strain or temperature sensor, also has been shown to be a good candidate for a dynamic pressure sensor.

Contribution of long-term accounting for raindrop size distribution variations on quantitative precipitation estimation by weather radar: Disdrometers vs parameter optimization

NASA Astrophysics Data System (ADS)

Hazenberg, P.; Uijlenhoet, R.; Leijnse, H.

2015-12-01

Volumetric weather radars provide information on the characteristics of precipitation at high spatial and temporal resolution. Unfortunately, rainfall measurements by radar are affected by multiple error sources, which can be subdivided into two main groups: 1) errors affecting the volumetric reflectivity measurements (e.g. ground clutter, vertical profile of reflectivity, attenuation, etc.), and 2) errors related to the conversion of the observed reflectivity (Z) values into rainfall intensity (R) and specific attenuation (k). Until the recent wide-scale implementation of dual-polarimetric radar, this second group of errors received relatively little attention, focusing predominantly on precipitation type-dependent Z-R and Z-k relations. The current work accounts for the impact of variations of the drop size distribution (DSD) on the radar QPE performance. We propose to link the parameters of the Z-R and Z-k relations directly to those of the normalized gamma DSD. The benefit of this procedure is that it reduces the number of unknown parameters. In this work, the DSD parameters are obtained using 1) surface observations from a Parsivel and Thies LPM disdrometer, and 2) a Monte Carlo optimization procedure using surface rain gauge observations. The impact of both approaches for a given precipitation type is assessed for 45 days of summertime precipitation observed within The Netherlands. Accounting for DSD variations using disdrometer observations leads to an improved radar QPE product as compared to applying climatological Z-R and Z-k relations. However, overall precipitation intensities are still underestimated. This underestimation is expected to result from unaccounted errors (e.g. transmitter calibration, erroneous identification of precipitation as clutter, overshooting and small-scale variability). In case the DSD parameters are optimized, the performance of the radar is further improved, resulting in the best performance of the radar QPE product. However, the resulting optimal Z-R and Z-k relations are considerably different from those obtained from disdrometer observations. As such, the best microphysical parameter set results in a minimization of the overall bias, which besides accounting for DSD variations also corrects for the impact of additional error sources.

Organic geochemistry in Pennsylvanian tidally influenced sediments from SW Indiana

USGS Publications Warehouse

Mastalerz, Maria; Kvale, E.P.; Stankiewicz, B.A.; Portle, K.

1999-01-01

Tidal rhythmites are vertically stacked small-scale sedimentary structures that record daily variations in tidal current energy and are known to overlie some low-sulfur coals in the Illinois Basin. Tidal rhythmites from the Pennsylvanian Brazil Formation in Indiana have been analyzed sedimentologically, petrographically, and geochemically in order to understand the character and distribution of organic matter (OM) preserved in an environment of daily interactions between marine and fresh waters. The concentration of organic matter (TOC) ranges from traces to 6.9% and sulfur rarely exceeds 0.1% in individual laminae. Angular vitrinite is the major organic matter type, accounting for 50-90% of total OM. The C/S ratio decreases as the verfical distance from the underlying coal increases. A decreasing C/S ratio coupled with decreases in Pr/Ph, Pr/n-C17, Ph/n-C18 ratios and a shift of carbon isotopic composition towards less negative values suggest an increase in salinity from freshwater in the mudflat tidal rhythmite facies close to the coal to brackish/marine in the sandflat tidal rhythmite facies further above from the coal. Within an interval spanning one year of deposition, TOC and S values show monthly variability. On a daily scale, TOC and S oscillations are still detectable but they are of lower magnitude than on a monthly scale. These small-scale variations are believed to reflect oscillations in water salinity related to tidal cycles.Tidal rhythmites are vertically stacked small-scale sedimentary structures that record daily variations in tidal current energy and are known to overlie some low-sulfur coals in the Illinois Basin. Tidal rhythmites from the Pennsylvanian Brazil Formation in Indiana have been analyzed sedimentologically, petrographically, and geochemically in order to understand the character and distribution of organic matter (OM) preserved in an environment of daily interactions between marine and fresh waters. The concentration of organic matter (TOC) ranges from traces to 6.9% and sulfur rarely exceeds 0.1% in individual laminae. Angular vitrinite is the major organic matter type, accounting for 50-90% of total OM. The C/S ratio decreases as the vertical distance from the underlying coal increases. A decreasing C/S ratio coupled with decreases in Pr/Ph, Pr/n-C17, Ph/n-C18 ratios and a shift of carbon isotopic composition towards less negative values suggest an increase in salinity from freshwater in the mudflat tidal rhythmite facies close to the coal to brackish/marine in the sandflat tidal rhythmite facies further above from the coal. Within an interval spanning one year of deposition, TOC and S values show monthly variability. On a daily scale, TOC and S oscillations are still detectable but they are of lower magnitude than on a monthly scale. These small-scale variations are believed to reflect oscillations in water salinity related to tidal cycles.

Functional skeletal morphology and its implications for locomotory behavior among three genera of myosoricine shrews (Mammalia: Eulipotyphla: Soricidae)

USGS Publications Warehouse

Woodman, Neal; Stabile, Frank A.

2015-01-01

Myosoricinae is a small clade of shrews (Mammalia, Eulipotyphla, Soricidae) that is currently restricted to the African continent. Individual species have limited distributions that are often associated with higher elevations. Although the majority of species in the subfamily are considered ambulatory in their locomotory behavior, species of the myosoricine genus Surdisorex are known to be semifossorial. To better characterize variation in locomotory behaviors among myosoricines, we calculated 32 morphological indices from skeletal measurements from nine species representing all three genera that comprise the subfamily (i.e., Congosorex, Myosorex, Surdisorex) and compared them to indices calculated for two species with well-documented locomotory behaviors: the ambulatory talpid Uropsilus soricipes and the semifossorial talpid Neurotrichus gibbsii. We summarized the 22 most complete morphological variables by 1) calculating a mean percentile rank for each species and 2) using the first principal component from principal component analysis of the indices. The two methods yielded similar results and indicate grades of adaptations reflecting a range of potential locomotory behaviors from ambulatory to semifossorial that exceeds the range represented by the two talpids. Morphological variation reflecting grades of increased semifossoriality among myosoricine shrews is similar in many respects to that seen for soricines, but some features are unique to the Myosoricinae.

Isotopic composition of Pb and Th in interplinian volcanics from Somma-Vesuvius volcano, Italy

USGS Publications Warehouse

Cortini, M.; Ayuso, R.A.; de Vivo, B.; Holden, P.; Somma, R.

2004-01-01

We present a detailed isotopic study of volcanic rocks emitted from Somma-Vesuvius volcano during three periods of interplinian activity: "Protohistoric" (3550 y B.P. to 79 A.D.), "Ancient Historic" (79 to 472 A.D.) and "Medieval" (472 to 1631 A.D.). Pb isotopic compositions of two acid leached fractions and whole rock residues of 37 whole rock samples (determined by Somma et al., 2001) show that each of the three interplinian periods is distinguished by small, systematic, and unique uranogenic and thorogenic Pb isotopic trends. This key and novel feature is compatible with the notion that the Pb isotopic data reflect small-scale source heterogeneity operating over relatively short periods of time. From this representative group of samples, a selected set of nine whole rocks were analysed for Th isotopes. 232Th/238U ratios in the source can be obtained independently from Pb and from Th isotopes. Those obtained from Pb isotopes represent source ratios, time-integrated over the whole age of the Earth; they range from 3.9 to 4.1. 232Th/238U obtained from Th isotopes are those of the present source. They are lower, and cluster around 3.5; this difference probably indicates recent U enrichment of the present source. The behaviour of Pb, as inferred by its isotopic ratios, is quite distinct from that of Sr and Nd isotopes: Pb isotope variations are not correlated to Sr or Nd isotope variations. The isotopic contrast is compatible with the idea that the isotopes were decoupled during magmatic production, evolution, and ascent through the crust. Thus, the Pb isotopes do not reflect the effects of the same processes as in the case of the Sr and Nd isotopes, or, as we also favor, they do not necessarily reflect the same source contributions into the magmas. Moreover, the Pb isotopic evolution of the interplinian rocks chiefly reflects mixing, driven by processes that are superimposed on, and independent of, other source contributions that determine the isotopic compositions of Sr and Nd. We suggest that reactions between magmas and fluids transported Pb and U, but not Sr. These data show that isotope mixing in the mantle is active at different times and scales. ?? Springer-Verlag 2004.

Diurnal variations in maize and soybean vegetation indices from continuous measurements of ground-based spectral reflectance

NASA Astrophysics Data System (ADS)

Arkebauer, T. J.; Walter-Shea, E. A.

2017-12-01

Vegetation indices, based on canopy spectral reflectance, are widely used to infer physical and biological characteristics of vegetation. Understanding the changes in remotely sensed signals as vegetation responds to its changing environment is essential for full assessment of canopy structure and function. Canopy-level reflectance has been measured at Nebraska AmeriFlux sites US-Ne1, US-Ne2 and US-Ne3 for most years since flux measurements were initiated in 2001. Tower-mounted spectral sensors provided 10-minute averaged reflectance (in PAR and NIR spectral regions) every half hour through the growing season for maize and soybean. Canopy reflectance varied over diurnal and seasonal time periods which led to variations in vegetation indices. One source of variation is due to the interaction of incident solar radiant energy with canopy structure (e.g., reflectance varies with changes in solar zenith angle and direct beam fraction, vegetative fraction, and leaf angle distribution). Another source of variation results from changes in canopy function (e.g., fluctuations in gross primary production and invocation of photoprotective mechanisms with plant stress). We present here a series of diurnal "patterns" of vegetation indices (including Normalized Difference Vegetation Index and Chlorophyll Index) for maize and soybean under mostly clear sky conditions. We demonstrate that diurnal patterns change as the LAI of the canopy changes through the course of the growing season in a somewhat predictable pattern from plant emergence (low vegetative cover) through peak green LAI (full vegetation cover). However, there are changes in the diurnal pattern that we have yet to fully understand; this variation in pattern may indicate variation in canopy function. Initially, we have explored the pattern changes qualitatively and are currently developing more quantitative approaches.

Misinterpretation of lateral acoustic variations on high-resolution seismic reflection profiles as fault offsets of Holocene bay mud beneath the southern part of San Francisco Bay, California

USGS Publications Warehouse

Marlow, M. S.; Hart, P.E.; Carlson, P.R.; Childs, J. R.; Mann, D. M.; Anima, R.J.; Kayen, R.E.

1996-01-01

We collected high-resolution seismic reflection profiles in the southern part of San Francisco Bay in 1992 and 1993 to investigate possible Holocene faulting along postulated transbay bedrock fault zones. The initial analog records show apparent offsets of reflection packages along sharp vertical boundaries. These records were originally interpreted as showing a complex series of faults along closely spaced, sharp vertical boundaries in the upper 10 m (0.013 s two-way travel time) of Holocene bay mud. A subsequent survey in 1994 was run with a different seismic reflection system, which utilized a higher power source. This second system generated records with deeper penetration (max. 20 m, 0.026 s two-way travel time) and demonstrated that the reflections originally interpreted as fault offsets by faulting were actually laterally continuous reflection horizons. The pitfall in the original interpretations was caused by lateral variations in the amplitude brightness of reflection events, coupled with a long (greater than 15 ms) source signature of the low-power system. These effects combined to show apparent offsets of reflection packages along sharp vertical boundaries. These boundaries, as shown by the second system, in fact occur where the reflection amplitude diminishes abruptly on laterally continuous reflection events. This striking lateral variation in reflection amplitude is attributable to the localized presence of biogenic(?) gas.

Thermal consequences of colour and near-infrared reflectance.

PubMed

Stuart-Fox, Devi; Newton, Elizabeth; Clusella-Trullas, Susana

2017-07-05

The importance of colour for temperature regulation in animals remains controversial. Colour can affect an animal's temperature because all else being equal, dark surfaces absorb more solar energy than do light surfaces, and that energy is converted into heat. However, in reality, the relationship between colour and thermoregulation is complex and varied because it depends on environmental conditions and the physical properties, behaviour and physiology of the animal. Furthermore, the thermal effects of colour depend as much on absorptance of near-infrared ((NIR), 700-2500 nm) as visible (300-700 nm) wavelengths of direct sunlight; yet the NIR is very rarely considered or measured. The few available data on NIR reflectance in animals indicate that the visible reflectance is often a poor predictor of NIR reflectance. Adaptive variation in animal coloration (visible reflectance) reflects a compromise between multiple competing functions such as camouflage, signalling and thermoregulation. By contrast, adaptive variation in NIR reflectance should primarily reflect thermoregulatory requirements because animal visual systems are generally insensitive to NIR wavelengths. Here, we assess evidence and identify key research questions regarding the thermoregulatory function of animal coloration, and specifically consider evidence for adaptive variation in NIR reflectance.This article is part of the themed issue 'Animal coloration: production, perception, function and application'. © 2017 The Author(s).

Polarized and non-polarized leaf reflectances of Coleus blumei

NASA Technical Reports Server (NTRS)

Grant, Lois; Daughtry, C. S. T.; Vanderbilt, V. C.

1987-01-01

A polarization photometer has been used to measure the reflectance of three variegated portions of Coleus blumei, Benth. in five wavelength bands of the visible and near-infrared spectrum. The polarized component of the reflectance factor was found to be independent of wavelength, indicating that the polarized reflectance arises from the leaf surface. It is suggested that differences in the polarized component result from variations in surface features. The nonpolarized component of the reflectance factor is shown to be related to the internal leaf structure. The variation of the degree of polarization with wavelength was found to be greatest in the regions of the spectrum where absorption occurs.

An investigation of surface albedo variations during the recent sahel drought. [ats 3 observations

NASA Technical Reports Server (NTRS)

Norton, C. C.; Mosher, F. R.; Hinton, B.

1978-01-01

Applications Technology Satellite 3 green sensor data were used to measure surface reflectance variations in the Sahara/Sahel during the recent drought period; 1967 to 1974. The magnitude of the seasonal reflectance change is shown to be as much as 80% for years of normal precipitation and less than 50% for drought years. Year to year comparisons during both wet and dry seasons reveal the existence of a surface reflectance cycle coincident with the drought intensity. The relationship between the green reflectance and solar albedo is examined and estimated to be about 0.6 times the reflectance change observed by the green channel.

Soybean canopy reflectance as a function of view and illumination geometry

NASA Technical Reports Server (NTRS)

Ranson, K. J.; Vanderbilt, V. C.; Biehl, L. L.; Robinson, B. F.; Bauer, M. E.

1981-01-01

Reflectances were calculated from measurements at four wavelength bands through eight view azimuth and seven view zenith directions, for various solar zenith and azimuth angles over portions of three days, in an experimental characterization of a soybean field by means of its reflectances and physical and agronomic attributes. Results indicate that the distribution of reflectance from a soybean field is a function of the solar illumination and viewing geometry, wavelength, and row direction, as well as the state of canopy development. Shadows between rows were found to affect visible wavelength band reflectance to a greater extent than near-IR reflectance. A model describing reflectance variation as a function of projected solar and viewing angles is proposed, which approximates the visible wavelength band reflectance variations of a canopy with a well-defined row structure.

A surface vitrinite reflectance anomaly related to Bell Creek oil field, Montana, U.S.A.

USGS Publications Warehouse

Barker, C.E.; Dalziel, M.C.; Pawlewicz, M.J.

1983-01-01

Vitrinite reflectance measurements from surface samples of mudrock and coal show anomalously high values over the Bell Creek oil field. The average vitrinite reflectance (Rm) increases to a maximum of 0.9 percent over the field against background values of about 0.3 percent. The Rm anomaly coincides with a geochemical anomaly indicated by diagenetic magnetite in surface rocks and a geobiologic anomaly indicated by ethane-consuming bacteria. These samples were taken from the Upper Cretaceous Hell Creek and Paleocene Fort Union Formations which form an essentially conformable sequence. The depositional environment is similar in both formations, and we expect little variation in the source and composition of the organic matter. The surface R m should be approximately constant because of a uniform thermal history across the field. Temperature studies over local oil fields with similar geology suggest the expected thermal anomaly would be less than 10?C (50?F), which is too small to account for the significantly higher rank over the field. Coal clinkers are rare in the vicinity of Bell Creek and an Rm anomaly caused by burning of the thin, discontinuous coal seams is unlikely. The limited topographic relief, less than 305 m (1,000 ft), over the shallow-dipping homoclinal structure and the poor correlation between Rm and sample locality elevation (r = -0.2) indicate that the Rm anomaly is not due to burial, deformation and subsequent erosion. We conjecture that activity by petroleum-metabolizing bacteria is a possible explanation of the Rm anomaly. Microseepage from oil reservoirs supports large colonies of these organisms, some of which can produce enzymes that can cleave hydrocarbon side-chains on the kerogen molecule. The loss of these side chains causes condensation of the ring structures (Stach and others, 1982) and consequently increases its reflectance. These data indicate that vitrinite reflectance may be a useful tool to explore for stratigraphic traps in the Powder River Basin. Further, the large variation of R across the Bell Creek area suggests that vitrinite reflectance data from surface samples should be interpreted with caution.

Design, Analysis, and On-Sun Evaluation of Reflective Strips Under Controlled Buckling

NASA Technical Reports Server (NTRS)

Jaworske, Donald A.; Sechkar, Edward A.; Colozza, Anthony J.

2014-01-01

Solar concentrators are envisioned for use in a variety of space-based applications, including applications involving in situ resource utilization. Identifying solar concentrators that minimize mass and cost are of great interest, especially since launch cost is driven in part by the mass of the payload. Concentrators must also be able to survive the wide temperature excursions on the lunar surface. Identifying smart structures which compensate for changes in concentrator geometry brought about by temperature extremes are of interest. Some applications may benefit from the ability to change the concentrators focal pattern at will. This paper addresses a method of designing a single reflective strip to produce a desired focal pattern through the use of controlled buckling. Small variations in the cross section over the length of the reflective strip influence the distribution of light in the focal region. A finite element method of analysis is utilized here which calculates the curve produced for a given strip cross section and axial load. Varying axial force and strip cross section over the length of the reflective strip provide a means of optimizing ray convergence in the focal region. Careful selection of a tapered cross section yields a reflective strip that approximates a parabola. An array of reflective strips under controlled buckling produces a light weight concentrator and adjustments in the compression of individual strips provide a means of compensating for temperature excursions or changing the focal pattern at will.

Design, Analysis, and On-Sun Evaluation of Reflective Strips Under Controlled Buckling

NASA Technical Reports Server (NTRS)

Jaworske, D. A.; Sechkar, E. A.; Colozza, A. J.

2014-01-01

Solar concentrators are envisioned for use in a variety of space-based applications, including applications involving in situ resource utilization. Identifying solar concentrators that minimize mass and cost are of great interest, especially since launch cost is driven in part by the mass of the payload. Concentrators must also be able to survive the wide temperature excursions on the lunar surface. Identifying smart structures which compensate for changes in concentrator geometry brought about by temperature extremes are of interest. Some applications may benefit from the ability to change the concentrator's focal pattern at will. This paper addresses a method of designing a single reflective strip to produce a desired focal pattern through the use of controlled buckling. Small variations in the cross section over the length of the reflective strip influence the distribution of light in the focal region. A finite element method of analysis is utilized here which calculates the curve produced for a given strip cross section and axial load. Varying axial force and strip cross section over the length of the reflective strip provide a means of optimizing ray convergence in the focal region. Careful selection of a tapered cross section yields a reflective strip that approximates a parabola. An array of reflective strips under controlled buckling produces a light weight concentrator and adjustments in the compression of individual strips provide a means of compensating for temperature excursions or changing the focal pattern at will.

Damage Detection of CFRP Plates by Full-Spectral Analysis of a Fibre Bragg Grating Sensor Signal

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mizutani, Yoshihiro; Solid and Structures Engineering Laboratory, Department of Mechanical Sciences and Engineering, Tokyo Institute of Technology, Japan, 2-12-1-I1-70, Ookayama, Meguro-ku, Tokyo 152-8552; Groves, Roger M.

2010-05-28

This paper describes the measurement of average strain, strain distribution and vibration of cantilever beam made of Carbon Fiber Reinforced Plastics (CFRP), using a single Fibre Bragg Grating (FBG) sensor mounted on the beam surface. Average strain is determined from the displacement of the peak wavelength of reflected light from the FBG sensor. Unstrained reference FBG sensors were used to compensate for temperature drift and the photoelastic coefficient (P{sub e}), which was used to calculate the gauge factor. Measured strains agree with those measured by a resistance foil strain gauge attached to the sample. Stress distributions are measured by monitoringmore » the variation in the full width half maximum (FWHM) values of the reflected spectrum, using a proposed optical analytical model, described in the paper. FWHM values were measured for both the cantilever test beam and a for a reference beam, loaded using a four-point bending rig. The trend of the stress distribution for the test beam matches with our analytical model, however with a relatively large noise present in the experimentally determined data. The vibration of cantilever beam was measured by temporal analysis of the peak reflection wavelength. This technique is very stable as measurements are not affected by variations in the signal amplitude. Finally an application of FBG sensors for damage detection of CFRP plates is demonstrated, by measuring the average strain and natural frequency. With small defects of different sizes applied to the CFRP plate, average strains were seen to increase with damage size and the natural frequency decreased with damage size.« less

Quantitative impedance characterization of sub-10 nm scale capacitors and tunnel junctions with an interferometric scanning microwave microscope.

PubMed

Wang, Fei; Clément, Nicolas; Ducatteau, Damien; Troadec, David; Tanbakuchi, Hassan; Legrand, Bernard; Dambrine, Gilles; Théron, Didier

2014-10-10

We present a method to characterize sub-10 nm capacitors and tunnel junctions by interferometric scanning microwave microscopy (iSMM) at 7.8 GHz. At such device scaling, the small water meniscus surrounding the iSMM tip should be reduced by proper tip tuning. Quantitative impedance characterization of attofarad range capacitors is achieved using an 'on-chip' calibration kit facing thousands of nanodevices. Nanoscale capacitors and tunnel barriers were detected through variations in the amplitude and phase of the reflected microwave signal, respectively. This study promises quantitative impedance characterization of a wide range of emerging functional nanoscale devices.

Rheed Investigation of Pd/Al Bimetallic System on KCl(001) Substrate

NASA Astrophysics Data System (ADS)

Masek, K.; Moroz, V.; Matolín, V.

Pd/Al alloys have very interesting properties from the point of view of their possible application in heterogeneous catalysis. Preparation of small heteroepitaxial Pd/Al alloy particles opens a new way in studies of the influence of Pd/Al crystallographic structure on the alloy catalytic properties. Pd/Al alloy particles were grown by the molecular beam epitaxy method. Their crystallographical structure was controlled by reflection high energy electron diffraction (RHEED). It was found that Pd deposited on epitaxial 3D Al particles grown on KCl is intermixing with Al. This process is accompanied by the variation of lattice parameter from the Al value to the Pd one.

The growth of radiative filamentation modes in sheared magnetic fields

NASA Technical Reports Server (NTRS)

Vanhoven, Gerard

1986-01-01

Observations of prominences show them to require well-developed magnetic shear and to have complex small-scale structure. Researchers show here that these features are reflected in the results of the theory of radiative condensation. Researchers studied, in particular, the influence of the nominally negligible contributions of perpendicular (to B) thermal conduction. They find a large number of unstable modes, with closely spaced growth rates. Their scale widths across B show a wide range of longitudinal and transverse sizes, ranging from much larger than to much smaller than the magnetic shear scale, the latter characterization applying particularly in the direction of shear variation.

Attenuated total reflectance spectroscopy of plant leaves: A tool for ecological and botanical studies

USGS Publications Warehouse

Ribeiro da Luz, B.

2006-01-01

??? Attenuated total reflectance (ATR) spectra of plant leaves display complex absorption features related to organic constituents of leaf surfaces. The spectra can be recorded rapidly, both in the field and in the laboratory, without special sample preparation. ??? This paper explores sources of ATR spectral variation in leaves, including compositional, positional and temporal variations. Interspecific variations are also examined, including the use of ATR spectra as a tool for species identification. ??? Positional spectral variations generally reflected the abundance of cutin and the epicuticular wax thickness and composition. For example, leaves exposed to full sunlight commonly showed more prominent cutin- and wax-related absorption features compared with shaded leaves. Adaxial vs. abaxial leaf surfaces displayed spectral variations reflecting differences in trichome abundance and wax composition. Mature vs. young leaves showed changes in absorption band position and intensity related to cutin, polysaccharide, and possibly amorphous silica development on and near the leaf surfaces. ??? Provided that similar samples are compared (e.g. adaxial surfaces of mature, sun-exposed leaves) same-species individuals display practically identical ATR spectra. Using spectral matching procedures to analyze an ATR database containing 117 individuals, including 32 different tree species, 83% of the individuals were correctly identified. ?? The Authors (2006).

Multispectral near-IR reflectance imaging of simulated early occlusal lesions: Variation of lesion contrast with lesion depth and severity

PubMed Central

Simon, Jacob C.; Chan, Kenneth H.; Darling, Cynthia L.; Fried, Daniel

2014-01-01

Background and Objectives Early demineralization appears with high contrast at near-IR wavelengths due to a ten to twenty fold difference in the magnitude of light scattering between sound and demineralized enamel. Water absorption in the near-IR has a significant effect on the lesion contrast and the highest contrast has been measured in spectral regions with higher water absorption. The purpose of this study was to determine how the lesion contrast changes with lesion severity and depth for different spectral regions in the near-IR and compare that range of contrast with visible reflectance and fluorescence. Materials and Methods Forty-four human molars were used in this in vitro study. Teeth were painted with an acid-resistant varnish, leaving a 4×4 mm window on the occlusal surface of each tooth exposed for demineralization. Artificial lesions were produced in the unprotected windows after 12–48 hr exposure to a demineralizing solution at pH-4.5. Near-IR reflectance images were acquired over several near-IR spectral distributions, visible light reflectance, and fluorescence with 405-nm excitation and detection at wavelengths greater than 500-nm. Crossed polarizers were used for reflectance measurements to reduce interference from specular reflectance. Cross polarization optical coherence tomography (CP-OCT) was used to non-destructively assess the depth and severity of demineralization in each sample window. Matching two dimensional CP-OCT images of the lesion depth and integrated reflectivity were compared with the reflectance and fluorescence images to determine how accurately the variation in the lesion contrast represents the variation in the lesion severity. Results Artificial lesions appear more uniform on tooth surfaces exposed to an acid challenge at visible wavelengths than they do in the near-IR. Measurements of the lesion depth and severity using CP-OCT show that the lesion severity varies markedly across the sample windows and that the lesion contrast in the visible does not accurately reflect the large variation in the lesion severity. Reflectance measurements at certain near-IR wavelengths more accurately reflect variation in the depth and severity of the lesions. Conclusion The results of the study suggest that near-IR reflectance measurements at longer wavelengths coincident with higher water absorption are better suited for imaging early caries lesions. PMID:24375543

Diffractive optical element-based glossmeter for the on-line measurement of normal reflectance on a printed porous coated paper

NASA Astrophysics Data System (ADS)

Oksman, Antti; Kuivalainen, Kalle; Ta˚G, Carl-Mikael; Juuti, Mikko; Mattila, Rauno; Hietala, Eero; Gane, Patrick A. C.; Peiponen, Kai-Erik

2011-04-01

Gloss of a product, such as print gloss, is mainly inspected with conventional white light glossmeters both at laboratory or production facilities. However, problems occur in conventional gloss measurement when the inspected surface is vertically moved in the plane of incidence and reflection or when the measurement area is small or curved. For a partial solution to these problems, we have previously introduced diffractive optical element-based glossmeters (DOGs) for the gloss inspection in laboratories and off-line use. We present a new construction of DOG, termed μDOG 1D, for the one-dimensional on-line print gloss measurement, in the form of the reflectance determination normal to the surface. The function of the glossmeter is demonstrated by laboratory tests and on-line measurements at a heat-set web offset printing machine. It is shown that gloss (i.e., normal reflectance) and minute gloss variation of papers and prints can be measured at the printing line using the glossmeter. This glossmeter is expected to be useful in real-time monitoring of the gloss and surface-specific absorption not only in the printing industry but also in inspection of products in other industrial sectors, such as metal finishing, laminating, paper, and construction materials manufacturing.

Upper Mantle Texture Patterns In Eastern North America From Seismic Anisotropy And Global Mantle Flow Calculations

NASA Astrophysics Data System (ADS)

Levin, V. L.; Moucha, R.; Yuan, H.

2013-12-01

Global seismic models show gradual and systematic changes in upper mantle seismic properties beneath North America. Faster and thicker lithosphere of the interior thins eastward. Upper mantle rock fabric reflected in observations of seismic anisotropy also varies. Near the coast apparent fast directions of split shear waves are nearly east-west, with considerable scatter. Further inland they are more uniform and align SW-NE, close to the absolute plate motion direction of North America. Mantle convection simulations driven by density inferred from global joint seismic-geodynamic tomography models exhibit complex flow beneath the eastern edge of the North American continent due to the ongoing descent of the Farallon slab deep beneath it (figure 1). Flow predicted beneath the coast is nearly horizontal with a small, though dynamically important, vertical component, while west of the Appalachians it turns downward. Long records of teleseismic observations accumulated at permanent seismic stations HRV, PAL and SSPA (figure 2) are inverted for vertical distribution of anisotropic parameters. We find preference for more than one layer of anisotropy beneath all sites, with significantly different parameters that could reflect either lateral variations in the lithospheric thickness, variations in the asthenospheric flow field, or both. Since we find considerable consistency in directional patterns of P-to-S mode converted waves associated with the lower part of the lithosphere, variations of asthenospheric flow seem to be a more plausible explanation. We explore the links between predicted flow and inferences from seismic data with additional observations of anisotropy and calculations of flow-induced rock fabric.

Decomposing functional trait associations in a Chinese subtropical forest

PubMed Central

Pei, Kequan; Kéry, Marc; Niklaus, Pascal A.; Schmid, Bernhard

2017-01-01

Functional traits, properties of organisms correlated with ecological performance, play a central role in plant community assembly and functioning. To some extents, functional traits vary in concert, reflecting fundamental ecological strategies. While “trait syndromes” characteristic of e.g. fast-growing, early-successional vs. competitive, late-successional species are recognized in principle, less is known about the environmental and genetic factors at the source of trait variation and covariation within plant communities. We studied the three leaf traits leaf half-life (LHL), leaf mass per area (LMA) and nitrogen concentration in green leaves (Ngreen) and the wood trait wood density (WD) in 294 individuals belonging to 45 tree or shrub species in a Chinese subtropical forest from September 2006 to January 2009. Using multilevel ANOVA and decomposition of sums of products, we estimated the amount of trait variation and covariation among species (mainly genetic causes), i.e. plant functional type (deciduous vs. evergreen species), growth form (tree vs. shrub species), family/genus/species differences, and within species (mainly environmental causes), i.e. individual and season. For single traits, the variation between functional types and among species within functional types was large, but only LMA and Ngreen varied significantly among families and thus showed phylogenetic signal. Trait variation among individuals within species was small, but large temporal variation due to seasonal effects was found within individuals. We did not find any trait variation related to soil conditions underneath the measured individuals. For pairs of traits, variation between functional types and among species within functional types was large, reflecting a strong evolutionary coordination of the traits, with LMA, LHL and WD being positively correlated among each other and negatively with Ngreen. This integration of traits was consistent with a putative stem-leaf economics spectrum ranging from deciduous species with thin, high-nitrogen leaves and low-density wood to evergreen species with thick, low-nitrogen leaves and dense wood and was not influenced by phylogenetic history. Trait coordination within species was weak, allowing individual trees to deviate from the interspecific trait coordination and thus respond flexibly to environmental heterogeneity. Our findings suggest that within a single woody plant community variation and covariation in functional traits allows a large number of species to co-exist and cover a broad spectrum of multivariate niche space, which in turn may increase total resource extraction by the community and community functioning. PMID:28419169

Life-history and ecological correlates of geographic variation in egg and clutch mass among passerine species

USGS Publications Warehouse

Martin, T.E.; Bassar, R.D.; Bassar, S.K.; Fontaine, J.J.; Lloyd, P.; Mathewson, Heather A.; Niklison, Alina M.; Chalfoun, A.

2006-01-01

Broad geographic patterns in egg and clutch mass are poorly described, and potential causes of variation remain largely unexamined. We describe interspecific variation in avian egg and clutch mass within and among diverse geographic regions and explore hypotheses related to allometry, clutch size, nest predation, adult mortality, and parental care as correlates and possible explanations of variation. We studied 74 species of Passeriformes at four latitudes on three continents: the north temperate United States, tropical Venezuela, subtropical Argentina, and south temperate South Africa. Egg and clutch mass increased with adult body mass in all locations, but differed among locations for the same body mass, demonstrating that egg and clutch mass have evolved to some extent independent of body mass among regions. A major portion of egg mass variation was explained by an inverse relationship with clutch size within and among regions, as predicted by life-history theory. However, clutch size did not explain all geographic differences in egg mass; eggs were smallest in South Africa despite small clutch sizes. These small eggs might be explained by high nest predation rates in South Africa; life-history theory predicts reduced reproductive effort under high risk of offspring mortality. This prediction was supported for clutch mass, which was inversely related to nest predation but not for egg mass. Nevertheless, clutch mass variation was not fully explained by nest predation, possibly reflecting interacting effects of adult mortality. Tests of the possible effects of nest predation on egg mass were compromised by limited power and by counterposing direct and indirect effects. Finally, components of parental investment, defined as effort per offspring, might be expected to positively coevolve. Indeed, egg mass, but not clutch mass, was greater in species that shared incubation by males and females compared with species in which only females incubate eggs. However, egg and clutch mass were not related to effort of parental care as measured by incubation attentiveness. Ecological and life-history correlates of egg and clutch mass variation found here follow from theory, but possible evolutionary causes deserve further study. ?? 2006 The Society for the Study of Evolution. All rights reserved.

Movement patterns and the conservation of amphibians breeding in small, temporary wetlands

USGS Publications Warehouse

Dodd, C.K.; Cade, B.S.

1998-01-01

Many amphibians breed in water but live most of their lives in terrestrial habitats. Little is known, however, about the spatial distribution of these habitats or of the distances and directions amphibians move to reach breeding sites. The amphibian community at a small, temporary pond in northcentral Florida was monitored for 5 years. Based on captures and recaptures of more than 2500 striped newts (Notophthalmus perstriatus) and 5700 eastern narrow-mouthed toads (Gastrophryne carolinensis), we tabulated the angles of orientation that these amphibians entered and exited the pond basin. Our results showed that movements of these species between the pond and terrestrial habitats were nonrandom in orientation, but that narrow corridors did not appear to be used. Differences between the species likely reflect differences in habitat preferences, whereas intraspecific differences among years and between the sexes likely reflect variation among individuals. For terrestrial buffer zones to be effective at conserving pond-breeding amphibian communities, they need both a distance and a directional component. The determination of a directional component may be obscured if studies are carried out over a short time span. Conservation efforts for wetland-breeding amphibians that concentrate solely on the wetland likely will fail without consideration of the adjacent terrestrial habitat.

Integrating sphere based reflectance measurements for small-area semiconductor samples

NASA Astrophysics Data System (ADS)

Saylan, S.; Howells, C. T.; Dahlem, M. S.

2018-05-01

This article describes a method that enables reflectance spectroscopy of small semiconductor samples using an integrating sphere, without the use of additional optical elements. We employed an inexpensive sample holder to measure the reflectance of different samples through 2-, 3-, and 4.5-mm-diameter apertures and applied a mathematical formulation to remove the bias from the measured spectra caused by illumination of the holder. Using the proposed method, the reflectance of samples fabricated using expensive or rare materials and/or low-throughput processes can be measured. It can also be incorporated to infer the internal quantum efficiency of small-area, research-level solar cells. Moreover, small samples that reflect light at large angles and develop scattering may also be measured reliably, by virtue of an integrating sphere insensitive to directionalities.

Multiresolution imaging of mantle reflectivity structure using SS and P'P' precursors

NASA Astrophysics Data System (ADS)

Schultz, Ryan; Gu, Yu J.

2013-10-01

Knowledge of the mantle reflectivity structure is highly dependent on our ability to efficiently extract, and properly interpret, small seismic arrivals. Among the various data types and techniques, long-period SS/PP precursors and high-frequency receiver functions are routinely utilized to increase the confidence of the recovered mantle stratifications at distinct spatial scales. However, low resolution and a complex Fresnel zone are glaring weaknesses of SS precursors, while over-reliance on receiver distribution is a formidable challenge for the analysis of converted waves from oceanic regions. A promising high frequency alternative to receiver functions is P'P' precursors, which are capable of resolving mantle structures at vertical and lateral resolution of ˜5 and ˜200 km, respectively, owing to their spectral content, shallow angle of incidence and near-symmetric Fresnel zones. This study presents a novel processing method for both SS (or PP) and P'P' precursors based on deconvolution, stacking, Radon transform and depth migration. A suite of synthetic tests is performed to quantify the fidelity and stability of this method under different data conditions. Our multiresolution survey of the mantle at targeted areas near Nazca-South America subduction zone reveal both olivine and garnet related transitions at depths below 400 km. We attribute a depressed 660 to thermal variations, whereas compositional variations atop the upper-mantle transition zone are needed to explain the diminished or highly complex reflected/scattered signals from the 410 km discontinuity. We also observe prominent P'P' reflections within the transition zone, and the anomalous amplitudes near the plate boundary zone indicate a sharp (˜10 km thick) transition that likely resonates with the frequency content of P'P' precursors. The migration of SS precursors in this study shows no evidence of split 660 reflections, but potential majorite-ilmenite (590-640 km) and ilmenite-perovskite transitions (740-750 km) are identified based on similarly processed high-frequency P'P' precursors. Additional findings of severely scattered energy in the lithosphere and distinct lower mantle reflections at ˜800 km could be potentially important but require further verifications. Overall, our improved imaging methods and the strong sensitivity of P'P' precursors to the existence, depth, sharpness and strength of reflective structures offer significant future promise for the understanding of mantle mineralogy and dynamics.

Urine oxalate biological variation in patients with primary hyperoxaluria.

PubMed

Clifford-Mobley, Oliver; Sjögren, Anna; Lindner, Elisabeth; Rumsby, Gill

2016-08-01

Hyperoxaluria is a well-recognised risk factor for urolithiasis and patients with primary hyperoxaluria (PH) gradually build up calcium oxalate deposits leading to chronic kidney disease. Efforts to improve treatment for PH have focused on reducing urine oxalate excretion and thus decreasing lithogenesis. To determine the efficacy of treatments designed to alter a biochemical parameter it is necessary to know the biological and analytical variation of that parameter. In this study, we estimated the intra-individual biological variation of urine oxalate excretion in patients with PH, and from this determined what would constitute a significant change in the form of a reference change value (RCV). Each patient collected four 24-h urines on consecutive weeks. The intra-individual biological variation of oxalate excretion calculated from these samples ranged from 0 to 36 % with a mean of 14 %. The corresponding RCVs were 4-84 % with a mean of 32 %. This result implies that, on average, a reduction of almost one-third in urine oxalate excretion is required to prove an effect from treatment. The wide range of biological variation between individuals may reflect other, as yet unknown, determinants of oxaluria in PH, as well as inaccuracies in urine collection. The data suggest that it is more appropriate to use individual RCVs established prior to treatment to determine its efficacy: a relatively small fall in urine oxalate excretion may be outside the biological variation of some patients but not of others.

Hospital staffing and local pay: an investigation into the impact of local variations in the competitiveness of nurses' pay on the staffing of hospitals in France.

PubMed

Combes, Jean-Baptiste; Delattre, Eric; Elliott, Bob; Skåtun, Diane

2015-09-01

Spatial wage theory suggests that employers in different regions may offer different pay rates to reflect local amenities and cost of living. Higher wages may be required to compensate for a less pleasant environment or a higher cost of living. If wages in a competing sector within an area are less flexible and therefore less competitive this may lead to an inability to employ staff. This paper considers the market for nursing staff in France where there is general regulation of wages and public hospitals compete for staff with the private hospital and non-hospital sectors. We consider two types of nursing staff, registered and assistant nurses and first establish the degree of spatial variation in the competitiveness of pay of nurses in public hospitals. We then consider whether these spatial variations are associated with variation in the employment of nursing staff. We find that despite regulation of pay in the public and private sector, there are substantial local variations in the competitiveness of nurses' pay. We find evidence that the spatial variations in the competitiveness of pay are associated with relative numbers of assistant nurses but not registered nurses. While we find the influence of the competitiveness of pay is small, it suggests that nonpay conditions may be an important factor in adjusting the labour market as might be expected in such a regulated market.

Experimental observation of the influence of furnace temperature profile on convection and segregation in the vertical Bridgman crystal growth technique

NASA Technical Reports Server (NTRS)

Neugebauer, G. T.; Wilcox, William R.

1992-01-01

Azulene-doped naphthalene was directionally solidified during the vertical Bridgman-Stockbarger technique. Doping homogeneity and convection were determined as a function of the temperature profile in the furnace and the freezing rate. Convection velocities were two orders of magnitude lower when the temperature increased with height. Rarely was the convection pattern axisymmetric, even though the temperature varied less than 0.1 K around the circumference of the growth ampoule. Correspondingly the cross sectional variation in azulene concentration tended to be asymmetric, especially when the temperature increased with height. This cross sectional variation changed dramatically along the ingot, reflecting changes in convection presumably due to the decreasing height of the melt. Although there was large scatter and irreproducibility in the cross sectional variation in doping, this variation tended to be least when the growth rate was low and the convection was vigorous. It is expected that compositional variations would also be small at high growth rates with weak convection and flat interfaces, although this was not investigated in the present experiments. Neither rotation of the ampoule nor deliberate introduction of thermal asymmetries during solidification had a significant influence on cross sectional variations in doping. It is predicted that slow directional solidification under microgravity conditions could produce greater inhomogeneities than on Earth. Combined use of microgravity and magnetic fields would be required to achieve homogeneity when it is necessary to freeze slowly in order to avoid constitutional supercooling.

"Economic man" in cross-cultural perspective: behavioral experiments in 15 small-scale societies.

PubMed

Henrich, Joseph; Boyd, Robert; Bowles, Samuel; Camerer, Colin; Fehr, Ernst; Gintis, Herbert; McElreath, Richard; Alvard, Michael; Barr, Abigail; Ensminger, Jean; Henrich, Natalie Smith; Hill, Kim; Gil-White, Francisco; Gurven, Michael; Marlowe, Frank W; Patton, John Q; Tracer, David

2005-12-01

Researchers from across the social sciences have found consistent deviations from the predictions of the canonical model of self-interest in hundreds of experiments from around the world. This research, however, cannot determine whether the uniformity results from universal patterns of human behavior or from the limited cultural variation available among the university students used in virtually all prior experimental work. To address this, we undertook a cross-cultural study of behavior in ultimatum, public goods, and dictator games in a range of small-scale societies exhibiting a wide variety of economic and cultural conditions. We found, first, that the canonical model - based on self-interest - fails in all of the societies studied. Second, our data reveal substantially more behavioral variability across social groups than has been found in previous research. Third, group-level differences in economic organization and the structure of social interactions explain a substantial portion of the behavioral variation across societies: the higher the degree of market integration and the higher the payoffs to cooperation in everyday life, the greater the level of prosociality expressed in experimental games. Fourth, the available individual-level economic and demographic variables do not consistently explain game behavior, either within or across groups. Fifth, in many cases experimental play appears to reflect the common interactional patterns of everyday life.

Evaluation of the Klobuchar model in TaiWan

NASA Astrophysics Data System (ADS)

Li, Jinghua; Wan, Qingtao; Ma, Guanyi; Zhang, Jie; Wang, Xiaolan; Fan, Jiangtao

2017-09-01

Ionospheric delay is the mainly error source in Global Navigation Satellite System (GNSS). Ionospheric model is one of the ways to correct the ionospheric delay. The single-frequency GNSS users modify the ionospheric delay by receiving the correction parameters broadcasted by satellites. Klobuchar model is widely used in Global Positioning System (GPS) and COMPASS because it is simple and convenient for real-time calculation. This model is established on the observations mainly from Europe and USA. It does not describe the equatorial anomaly region. South of China is located near the north crest of the equatorial anomaly, where the ionosphere has complex spatial and temporal variation. The assessment on the validation of Klobuchar model in this area is important to improve this model. Eleven years (2003-2014) data from one GPS receiver located at Taoyuan Taiwan (121°E, 25°N) are used to assess the validation of Klobuchar model in Taiwan. Total electron content (TEC) from the dual-frequency GPS observations is calculated and used as the reference, and TEC based on the Klobuchar model is compared with the reference. The residual is defined as the difference between the TEC from Klobuchar model and the reference. It is a parameter to reflect the absolute correction of the model. RMS correction percentage presents the validation of the model relative to the observations. The residuals' long-term variation, the RMS correction percentage, and their changes with the latitudes are analyzed respectively to access the model. In some months the RMS correction did not reach the goal of 50% purposed by Klobuchar, especially in the winter of the low solar activity years and at nighttime. RMS correction did not depend on the 11-years solar activity, neither the latitudes. Different from RMS correction, the residuals changed with the solar activity, similar to the variation of TEC. The residuals were large in the daytime, during the equinox seasons and in the high solar activity years; they are small at night, during the solstice seasons, and in the low activity years. During 1300-1500 BJT in the high solar activity years, the mean bias was negative, implying the model underestimated TEC on average. The maximum mean bias was 33TECU in April 2014, and the maximum underestimation reached 97TECU in October 2011. During 0000-0200 BJT, the residuals had small mean bias, small variation range and small standard deviation. It suggested that the model could describe the TEC of the ionosphere better than that in the daytime. Besides the variation with the solar activity, the residuals also vary with the latitudes. The means bias reached the maximum at 20-22°N, corresponding to the north crest of the equatorial anomaly. At this latitude, the maximum mean bias was 47TECU lower than the observation in the high activity years, and 12TECU lower in the low activity years. The minimum variation range appeared at 30-32°N in high and low activity years. But the minimum mean bias was at different latitudes in the high and low activity years. In the high activity years, it appeared at 30-32°N, and in the low years it was at 24-26°N. For an ideal model, the residuals should have small mean bias and small variation range. Further study is needed to learn the distribution of the residuals and to improve the model.

Multi-isotope tracers to investigate processes in the Elbe, Weser and Ems river catchment using B, Mo, Sr, and Pb isotope ratios assessed by MC ICP-MS

NASA Astrophysics Data System (ADS)

Irrgeher, Johanna; Reese, Anna; Zimmermann, Tristan; Prohaska, Thomas; Retzmann, Anika; Wieser, Michael E.; Zitek, Andreas; Proefrock, Daniel

2017-04-01

Environmental monitoring of complex ecosystems requires reliable sensitive techniques based on sound analytical strategies to identify the source, fate and sink of elements and matter. Isotopic signatures can serve to trace pathways by making use of specific isotopic fingermarks or to distinguish between natural and anthropogenic sources. The presented work shows the potential of using the isotopic variation of Sr, Pb (as well-established isotopic systems), Mo and B (as novel isotopic system) assessed by MC ICP-MS in water and sediment samples to study aquatic ecosystem transport processes. The isotopic variation of Sr, Pb, Mo and B was determined in different marine and estuarine compartments covering the catchment of the German Wadden Sea and its main tributaries, the Elbe, Weser and Ems River. The varying elemental concentrations, the complex matrix and the expected small variations in the isotopic composition required the development and application of reliable analytical measurement approaches as well as suited metrological data evaluation strategies. Aquatic isoscapes were created using ArcGIS® by relating spatial isotopic data with geographical and geological maps. The elemental and isotopic distribution maps show large variation for different parameters and also reflect the numerous impact factors (e.g. geology, anthropogenic sources) influencing the catchment area.

Canalization of body size matters for lifetime reproductive success of male predatory mites (Acari: Phytoseiidae).

PubMed

Walzer, Andreas; Schausberger, Peter

2014-04-01

The adaptive canalization hypothesis predicts that highly fitness-relevant traits are canalized via past selection, resulting in low phenotypic plasticity and high robustness to environmental stress. Accordingly, we hypothesized that the level of phenotypic plasticity of male body size of the predatory mites Phytoseiulus persimilis (low plasticity) and Neoseiulus californicus (high plasticity) reflects the effects of body size variation on fitness, especially male lifetime reproductive success (LRS). We first generated small and standard-sized males of P. persimilis and N. californicus by rearing them to adulthood under limited and ample prey supply, respectively. Then, adult small and standard-sized males were provided with surplus virgin females throughout life to assess their mating and reproductive traits. Small male body size did not affect male longevity or the number of fertilized females but reduced male LRS of P. persimilis but not N. californicus . Proximately, the lower LRS of small than standard-sized P. persimilis males correlated with shorter mating durations, probably decreasing the amount of transferred sperm. Ultimately, we suggest that male body size is more strongly canalized in P. persimilis than N. californicus because deviation from standard body size has larger detrimental fitness effects in P. persimilis than N. californicus .

Seasonal and geographical distribution of near-surface small photosynthetic eukaryotes in the western North Pacific determined by pyrosequencing of 18S rDNA.

PubMed

Kataoka, Takafumi; Yamaguchi, Haruyo; Sato, Mayumi; Watanabe, Tsuyoshi; Taniuchi, Yukiko; Kuwata, Akira; Kawachi, Masanobu

2017-02-01

In this study, we investigated the distribution of small photosynthetic eukaryotes in the near-surface layer of the western North Pacific at four stations, including two oceanic stations where the subarctic Oyashio and subtropical Kuroshio currents influence a transition region and the bay mouth and head of the Sendai Bay, from April 2012 to May 2013. Flow cytometry was applied to sort small photosynthetic eukaryotes (<5 μm), and high-throughput sequencing of 18S rDNA was performed. Our taxonomic analysis showed that 19/195 operational taxonomic units (OTUs) were frequently distributed among all sites. Composition analysis showed that the OTUs had characteristic patterns and were divided into four main groups. Two groups reflected the low-saline water and winter season, with the characteristic OTUs belonging to diatoms; Chaetoceros and Leptocylindrus were characteristic of low saline water, and two diatom genera (Minidiscus and Minutocellus) and Cryptomonadales-related OTUs were prevalent in the winter. Our results indicate that the community composition of small photosynthetic eukaryotes seasonally changes in a dynamic manner according to variations in water properties. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Microwave power transmission system wherein level of transmitted power is controlled by reflections from receiver

NASA Technical Reports Server (NTRS)

Robinson, W. J., Jr. (Inventor)

1974-01-01

A microwave, wireless, power transmission system is described in which the transmitted power level is adjusted to correspond with power required at a remote receiving station. Deviations in power load produce an antenna impedance mismatch causing variations in energy reflected by the power receiving antenna employed by the receiving station. The variations in reflected energy are sensed by a receiving antenna at the transmitting station and used to control the output power of a power transmitter.

The continuum slope of Mars - Bidirectional reflectance investigations and applications to Olympus Mons

NASA Astrophysics Data System (ADS)

Fischer, E. M.; Pieters, C. M.

1993-04-01

Two primary causes of near-IR continuum slope variations have been observed in an investigation of the bidirectional reflectance characteristics of ferric coatings on the continuum slope of Mars. First, the presence of a thin ferric coating on a dark substrate produces a negative continuum slope due to the wavelength-dependent transparency of the ferric coating. Second, wavelength-dependent directional reflectance occurs when the surface particles are tightly packed, particle sizes are on the order of or smaller than the wavelength of light, or the surface is otherwise smooth on the order of the wavelength of light. Based on these results, the annuli on the flanks of Olympus Mons which are defined by reflectance and continuum slope are consistent with spatial variations in surface texture and possibly with spatial variations in the thickness of a ferric dust coating or rind.

Reflectance of vegetation, soil, and water. [effects of measurable plant parameters on multispectral signal variations

NASA Technical Reports Server (NTRS)

Wiegand, C. L. (Principal Investigator)

1974-01-01

The author has identified the following significant results. Reflectance of crop residues, that are important in reducing wind and water erosion, was more often different from bare soil in band 4 than in bands 5, 6, or 7. The plant parameters leaf area index, plant population, plant cover, and plant height explained 95.9 percent of the variation in band 7 (reflective infrared) digital counts for cotton and 78.2 percent of the variation in digital counts for the combined crops sorghum and corn; hence, measurable plant parameters explain most of the signal variation recorded for corpland. Leaf area index and plant population are both highly correlated with crop yields; since plant population can be readily measured (or possibly inferred from seeding rates), it is useful measurement for calibrating ERTS-type MSS digital data in terms of yield.

Interactions of multi-scale heterogeneity in the lithosphere: Australia

NASA Astrophysics Data System (ADS)

Kennett, B. L. N.; Yoshizawa, K.; Furumura, T.

2017-10-01

Understanding the complex heterogeneity of the continental lithosphere involves a wide variety of spatial scales and the synthesis of multiple classes of information. Seismic surface waves and multiply reflected body waves provide the main constraints on broad-scale structure, and bounds on the extent of the lithosphere-asthenosphere transition (LAT) can be found from the vertical gradients of S wavespeed. Information on finer-scale structures comes through body wave studies, including detailed seismic tomography and P-wave reflectivity extracted from stacked autocorrelograms of continuous component records. With the inclusion of deterministic large-scale structure and realistic medium-scale stochastic features fine-scale variations are subdued. The resulting multi-scale heterogeneity model for the Australian region gives a good representation of the character of observed seismograms and their geographic variations and matches the observations of P-wave reflectivity. P reflections in the 0.5-3.0 Hz band in the uppermost mantle suggest variations on vertical scales of a few hundred metres with amplitudes of the order of 1%. Interference of waves reflected or converted at sequences of such modest variations in physical properties produce relatively simple behaviour for lower frequencies, which can suggest simpler structures than are actually present. Vertical changes in the character of fine-scale heterogeneity can produce apparent discontinuities. In Central Australia a 'mid-lithospheric discontinuity' can be tracked via changes in frequency content of station reflectivity, with links to the broad-scale pattern of wavespeed gradients and, in particular, the gradients of radial anisotropy. Comparisons with xenolith results from southeastern Australia indicate a strong tie between geochemical stratification and P-wave reflectivity.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mainzer, A.; Masiero, J.; Hand, E.

The NEOWISE data set offers the opportunity to study the variations in albedo for asteroid classification schemes based on visible and near-infrared observations for a large sample of minor planets. We have determined the albedos for nearly 1900 asteroids classified by the Tholen, Bus, and Bus-DeMeo taxonomic classification schemes. We find that the S-complex spans a broad range of bright albedos, partially overlapping the low albedo C-complex at small sizes. As expected, the X-complex covers a wide range of albedos. The multiwavelength infrared coverage provided by NEOWISE allows determination of the reflectivity at 3.4 and 4.6 {mu}m relative to themore » visible albedo. The direct computation of the reflectivity at 3.4 and 4.6 {mu}m enables a new means of comparing the various taxonomic classes. Although C, B, D, and T asteroids all have similarly low visible albedos, the D and T types can be distinguished from the C and B types by examining their relative reflectance at 3.4 and 4.6 {mu}m. All of the albedo distributions are strongly affected by selection biases against small, low albedo objects, as all objects selected for taxonomic classification were chosen according to their visible light brightness. Due to these strong selection biases, we are unable to determine whether or not there are correlations between size, albedo, and space weathering. We argue that the current set of classified asteroids makes any such correlations difficult to verify. A sample of taxonomically classified asteroids drawn without significant albedo bias is needed in order to perform such an analysis.« less

Influence of Subpixel Scale Cloud Top Structure on Reflectances from Overcast Stratiform Cloud Layers

NASA Technical Reports Server (NTRS)

Loeb, N. G.; Varnai, Tamas; Winker, David M.

1998-01-01

Recent observational studies have shown that satellite retrievals of cloud optical depth based on plane-parallel model theory suffer from systematic biases that depend on viewing geometry, even when observations are restricted to overcast marine stratus layers, arguably the closest to plane parallel in nature. At moderate to low sun elevations, the plane-parallel model significantly overestimates the reflectance dependence on view angle in the forward-scattering direction but shows a similar dependence in the backscattering direction. Theoretical simulations are performed that show that the likely cause for this discrepancy is because the plane-parallel model assumption does not account for subpixel, scale variations in cloud-top height (i.e., "cloud bumps"). Monte Carlo simulation, comparing ID model radiances to radiances from overcast cloud field with 1) cloud-top height variation, but constant cloud volume extinction; 2) flat tops but horizontal variations in cloud volume extinction; and 3) variations in both cloud top height and cloud extinction are performed over a approximately equal to 4 km x 4 km domain (roughly the size of an individual GAC AVHRR pixel). The comparisons show that when cloud-top height variations are included, departures from 1D theory are remarkably similar (qualitatively) to those obtained observationally. In contrast, when clouds are assumed flat and only cloud extinction is variable, reflectance differences are much smaller and do not show any view-angle dependence. When both cloud-top height and cloud extinction variations are included, however, large increases in cloud extinction variability can enhance reflectance difference. The reason 3D-1D reflectance differences are more sensitive to cloud-top height variations in the forward-scattering direction (at moderate to low, sun elevations) is because photons leaving the cloud field in that direction experience fewer scattering events (low-order scattering) and are restricted to the topmost portions of the cloud. While reflectance deviations from 1D theory are much larger for bumpy clouds than for flat clouds with variable cloud extinction, differences in cloud albedo are comparable for these two cases.

Timing of breeding in variable environments: tropical birds as model systems.

PubMed

Hau, M

2001-09-01

Animals need to adjust reproductive decisions to environmental seasonality. In contrast to species from the well-studied temperate zones, little is known for tropical birds about the environmental cues that stimulate reproductive activity and the physiological mechanisms that regulate reproduction. I am investigating the environmental and endocrine mechanisms that underlie the timing of reproduction in spotted antbirds from the near-equatorial Panamanian rainforest and in small ground finches from the equatorial arid Galápagos islands. Spotted antbirds live in a fairly predictable seasonal environment and show regular changes in gonad sizes and some reproductive hormones. Despite the small annual variation in photoperiod close to the equator, these birds can measure slight photoperiodic increases and use it to initiate reproductive activity. Spotted antbirds also respond to seasonal changes in food availability, which allows them to flexibly adjust gonad growth to environmental conditions. Testosterone is involved in regulating song and aggressive behavior in these year-round territorial birds, although it can remain at low plasma levels throughout the year. In contrast, small ground finches exposed to a rather unpredictable climate on Galápagos appear to grow their gonads whenever heavy rains fall and have regressed gonads during other times of the year. The lack of a physiological preparation for the breeding season and their response to short-term cues related to rainfall indicate a striking flexibility in the regulation of breeding in small ground finches. I suggest that tropical birds can serve as model systems to study the physiological adaptations to different environments. Unraveling the neuroendocrine mechanisms behind the flexibility in reproductive timing will clarify whether differences found between temperate and tropical birds represent variations of the same basic mechanism or instead reflect a fundamental divergence in physiological control systems. Copyright 2001 Academic Press.

Functional and morphological correlates of mandibular symphyseal form in a living human sample.

PubMed

Holton, Nathan E; Franciscus, Robert G; Ravosa, Matthew J; Southard, Thomas E

2014-03-01

Variation in recent human mandibular form is often thought to reflect differences in masticatory behavior associated with variation in food preparation and subsistence strategies. Nevertheless, while mandibular variation in some human comparisons appear to reflect differences in functional loading, other comparisons indicate that this relationship is not universal. This suggests that morphological variation in the mandible is influenced by other factors that may obscure the effects of loading on mandibular form. It is likely that highly strained mandibular regions, including the corpus, are influenced by well-established patterns of lower facial skeletal integration. As such, it is unclear to what degree mandibular form reflects localized stresses incurred during mastication vs. a larger set of correlated features that may influence bone distribution patterns. In this study, we examine the relationship between mandibular symphyseal bone distribution (i.e., second moments of area, cortical bone area) and masticatory force production (i.e., in vivo maximal bite force magnitude and estimated symphyseal bending forces) along with lower facial shape variation in a sample of n = 20 living human male subjects. Our results indicate that while some aspects of symphyseal form (e.g., wishboning resistance) are significantly correlated with estimates of symphyseal bending force magnitude, others (i.e., vertical bending resistance) are more closely tied to variation in lower facial shape. This suggests that while the symphysis reflects variation in some variables related to functional loading, the complex and multifactorial influences on symphyseal form underscores the importance of exercising caution when inferring function from the mandible especially in narrow taxonomic comparisons. Copyright © 2013 Wiley Periodicals, Inc.

Variable Refractive Index Effects on Radiation in Semitransparent Scattering Multilayered Regions

NASA Technical Reports Server (NTRS)

Siegel, R.; Spuckler, C. M.

1993-01-01

A simple set of equations is derived for predicting the temperature distribution and radiative energy flow in a semitransparent layer consisting of an arbitrary number of laminated sublayers that absorb, emit, and scatter radiation. Each sublayer can have a different refractive index and optical thickness. The plane composite region is heated on each exterior side by a different amount of incident radiation. The results are for the limiting case where heat conduction within the layers is very small relative to radiative transfer, and is neglected. The interfaces are assumed diffuse, and all interface reflections are included in the analysis. The thermal behavior is readily calculated from the analytical expressions that are obtained. By using many sublayers, expressions provide the temperature distribution and heat flow for a diffusing medium with a continually varying refractive index, including internal reflection effects caused by refractive index gradients. Temperature and heat flux results are given to show the effect of variations in refractive index and optical thickness through the multilayer laminate.

Phylogenetic Diversity in the Macromolecular Composition of Microalgae

PubMed Central

Finkel, Zoe V.; Follows, Mick J.; Liefer, Justin D.; Brown, Chris M.; Benner, Ina; Irwin, Andrew J.

2016-01-01

The elemental stoichiometry of microalgae reflects their underlying macromolecular composition and influences competitive interactions among species and their role in the food web and biogeochemistry. Here we provide a new estimate of the macromolecular composition of microalgae using a hierarchical Bayesian analysis of data compiled from the literature. The median macromolecular composition of nutrient-sufficient exponentially growing microalgae is 32.2% protein, 17.3% lipid, 15.0% carbohydrate, 17.3% ash, 5.7% RNA, 1.1% chlorophyll-a and 1.0% DNA as percent dry weight. Our analysis identifies significant phylogenetic differences in macromolecular composition undetected by previous studies due to small sample sizes and the large inherent variability in macromolecular pools. The phylogenetic differences in macromolecular composition lead to variations in carbon-to-nitrogen ratios that are consistent with independent observations. These phylogenetic differences in macromolecular and elemental composition reflect adaptations in cellular architecture and biochemistry; specifically in the cell wall, the light harvesting apparatus, and storage pools. PMID:27228080

Variable Refractive Index Effects on Radiation in Semitransparent Scattering Multilayered Regions

NASA Technical Reports Server (NTRS)

Siegel, R.; Spuckler, C. M.

1993-01-01

A simple set of equations is derived for predicting the temperature distribution and radiative energy flow in a semitransparent layer consisting of an arbitrary number of laminated sublayers that absorb, emit, and scatter radiation. Each sublayer can have a different refractive index and optical thickness. The plane composite region is heated on each exterior side by a different amount of incident radiation. The results are for the limiting case where heat conduction within the layers is very small relative to radiative transfer, and is neglected. The interfaces are assumed diffuse, and all interface reflections are included in the analysis. The thermal behavior is readily calculated from the analytical expressions that are obtained. By using many sublayers, the analytical expressions provide the temperature distribution and heat flow for a diffusing medium with a continuously varying refractive index, including internal reflection effects caused by refractive index gradients. Temperature and heat flux results are given to show the effect of variations in refractive index and optical thickness through the multilayer laminate.

Sensitivity of Multiangle, Multispectral Polarimetric Remote Sensing Over Open Oceans to Water-Leaving Radiance: Analyses of RSP Data Acquired During the MILAGRO Campaign

NASA Technical Reports Server (NTRS)

Chowdhary, Jacek; Cairns, Brian; Waquet, Fabien; Knobelspiesse, Kirk; Ottaviani, Matteo; Redemann, Jens; Travis, Larry; Mishchenko, Michael

2012-01-01

For remote sensing of aerosol over the ocean, there is a contribution from light scattered underwater. The brightness and spectrum of this light depends on the biomass content of the ocean, such that variations in the color of the ocean can be observed even from space. Rayleigh scattering by pure sea water, and Rayleigh-Gans type scattering by plankton, causes this light to be polarized with a distinctive angular distribution. To study the contribution of this underwater light polarization to multiangle, multispectral observations of polarized reflectance over ocean, we previously developed a hydrosol model for use in underwater light scattering computations that produces realistic variations of the ocean color and the underwater light polarization signature of pure sea water. In this work we review this hydrosol model, include a correction for the spectrum of the particulate scattering coefficient and backscattering efficiency, and discuss its sensitivity to variations in colored dissolved organic matter (CDOM) and in the scattering function of marine particulates. We then apply this model to measurements of total and polarized reflectance that were acquired over open ocean during the MILAGRO field campaign by the airborne Research Scanning Polarimeter (RSP). Analyses show that our hydrosol model faithfully reproduces the water-leaving contributions to RSP reflectance, and that the sensitivity of these contributions to Chlorophyll a concentration [Chl] in the ocean varies with the azimuth, height, and wavelength of observations. We also show that the impact of variations in CDOM on the polarized reflectance observed by the RSP at low altitude is comparable to or much less than the standard error of this reflectance whereas their effects in total reflectance may be substantial (i.e. up to >30%). Finally, we extend our study of polarized reflectance variations with [Chl] and CDOM to include results for simulated spaceborne observations.

Lake Level Variation in Small Lakes: Not a Clear Picture

NASA Astrophysics Data System (ADS)

Starratt, S.

2017-12-01

Lake level is a useful tool for identifying regional changes in precipitation and evaporation. Due to the volume of water in large lakes, they may only record large-scale changes in water balance, while smaller lakes may record more subtle variations. However, the record of water level in small lakes is affected by a number of factors including elevation, bathymetry, nutrient load, and aquatic macrophyte abundance. The latest Quaternary diatom records from three small lakes with areas of <10 ha (Hobart Lake, OR, 1458 masl; Swamp Lake, CA, 1554 masl; Favre Lake, NV, 2899 masl) and a larger lake (Medicine Lake, CA, 2036 masl, 154 ha) were compared in this study. All the lakes have a deep central basin (>10 m) surrounded by a shallow (1-2 m) shelf. Changes in the abundance of diatoms representing different life habits (benthic, tychoplanktic, planktic) were used to identify lake level variation. Benthic taxa dominate the assemblage when only the central basin is occupied. As the shallow shelf is flooded, the abundance of tychoplanktic taxa increases. Planktic taxa increase with the establishment of stratification. Favre Lake presents the clearest indication of initial lake level rise (7600-5750 cal yr BP) and intermittent flooding of the shelf for the remainder of the record. Stratification appears to become established only in the last few hundred years. Higher nutrient levels in the early part of the Hobart Lake record lead to a nearly monotypic planktic assemblage which is replaced by a tychoplanktic-dominated assemblage as the lake floods the shelf at about 3500 cal yr BP. The last 500 years is dominated by benthic taxa associated with aquatic macrophytes. The consistent presence of planktic taxa in the Swamp Lake record suggests that the lake was stratified during most of its history, although slight variations in the relative abundances of planktic and tychoplanktic groups occur. The Medicine Lake record shows a gradual increase in planktic species between 11,400 and 5500 cal yr BP, reflecting a gradual increase in stratification. Changes in the abundance of benthic and planktic taxa during the remainder of the record indicate variations in the shallow (<2 m) part of the lake. These results indicate diatom ecological groups show promise as a proxy for lake level reconstructions, and further ground-truthing is necessary.

Variations in fresh fruit and vegetable quality by store type, urban-rural setting and neighbourhood deprivation in Scotland.

PubMed

Cummins, Steven; Smith, Dianna M; Taylor, Mathew; Dawson, John; Marshall, David; Sparks, Leigh; Anderson, Annie S

2009-11-01

Neighbourhood differences in access to fresh fruit and vegetables may explain social inequalities in diet. Investigations have focused on variations in cost and availability as barriers to the purchase and consumption of fresh produce; investigations of quality have been neglected. Here we investigate whether produce quality systematically varies by food store type, rural-urban location and neighbourhood deprivation in a selection of communities across Scotland. Cross-sectional survey of twelve fresh fruit and vegetable items in 288 food stores in ten communities across Scotland. Communities were selected to reflect a range of urban-rural settings and a food retail census was conducted in each location. The quality of twelve fruit and vegetable items within each food store was evaluated. Data from the Scottish Executive were used to characterise each small area by deprivation and urban-rural classification. Scotland. Quality of fruit and vegetables within the surveyed stores was high. Medium-sized stores, stores in small town and rural areas, and stores in more affluent areas tended to have the highest-quality fresh fruit and vegetables. Stores where food is secondary, stores in urban settings and stores in more deprived areas tended have the lowest-quality fresh produce. Although differences in quality were not always statistically significant, patterns were consistent for the majority of fruit and vegetable items. The study provides evidence that variations in food quality may plausibly be a micro-environmental mediating variable in food purchase and consumption and help partially explain neighbourhood differences in food consumption patterns.

Adaptive divergence despite strong genetic drift: genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyon littoralis)

PubMed Central

FUNK, W. CHRIS; LOVICH, ROBERT E.; HOHENLOHE, PAUL A.; HOFMAN, COURTNEY A.; MORRISON, SCOTT A.; SILLETT, T. SCOTT; GHALAMBOR, CAMERON K.; MALDONADO, JESUS E.; RICK, TORBEN C.; DAY, MITCH D.; POLATO, NICHOLAS R.; FITZPATRICK, SARAH W.; COONAN, TIMOTHY J.; CROOKS, KEVIN R.; DILLON, ADAM; GARCELON, DAVID K.; KING, JULIE L.; BOSER, CHRISTINA L.; GOULD, NICHOLAS; ANDELT, WILLIAM F.

2016-01-01

The evolutionary mechanisms generating the tremendous biodiversity of islands have long fascinated evolutionary biologists. Genetic drift and divergent selection are predicted to be strong on islands and both could drive population divergence and speciation. Alternatively, strong genetic drift may preclude adaptation. We conducted a genomic analysis to test the roles of genetic drift and divergent selection in causing genetic differentiation among populations of the island fox (Urocyon littoralis). This species consists of 6 subspecies, each of which occupies a different California Channel Island. Analysis of 5293 SNP loci generated using Restriction-site Associated DNA (RAD) sequencing found support for genetic drift as the dominant evolutionary mechanism driving population divergence among island fox populations. In particular, populations had exceptionally low genetic variation, small Ne (range = 2.1–89.7; median = 19.4), and significant genetic signatures of bottlenecks. Moreover, islands with the lowest genetic variation (and, by inference, the strongest historical genetic drift) were most genetically differentiated from mainland gray foxes, and vice versa, indicating genetic drift drives genome-wide divergence. Nonetheless, outlier tests identified 3.6–6.6% of loci as high FST outliers, suggesting that despite strong genetic drift, divergent selection contributes to population divergence. Patterns of similarity among populations based on high FST outliers mirrored patterns based on morphology, providing additional evidence that outliers reflect adaptive divergence. Extremely low genetic variation and small Ne in some island fox populations, particularly on San Nicolas Island, suggest that they may be vulnerable to fixation of deleterious alleles, decreased fitness, and reduced adaptive potential. PMID:26992010

Azimuthal Seismic Amplitude Variation with Offset and Azimuth Inversion in Weakly Anisotropic Media with Orthorhombic Symmetry

NASA Astrophysics Data System (ADS)

Pan, Xinpeng; Zhang, Guangzhi; Yin, Xingyao

2018-01-01

Seismic amplitude variation with offset and azimuth (AVOaz) inversion is well known as a popular and pragmatic tool utilized to estimate fracture parameters. A single set of vertical fractures aligned along a preferred horizontal direction embedded in a horizontally layered medium can be considered as an effective long-wavelength orthorhombic medium. Estimation of Thomsen's weak-anisotropy (WA) parameters and fracture weaknesses plays an important role in characterizing the orthorhombic anisotropy in a weakly anisotropic medium. Our goal is to demonstrate an orthorhombic anisotropic AVOaz inversion approach to describe the orthorhombic anisotropy utilizing the observable wide-azimuth seismic reflection data in a fractured reservoir with the assumption of orthorhombic symmetry. Combining Thomsen's WA theory and linear-slip model, we first derive a perturbation in stiffness matrix of a weakly anisotropic medium with orthorhombic symmetry under the assumption of small WA parameters and fracture weaknesses. Using the perturbation matrix and scattering function, we then derive an expression for linearized PP-wave reflection coefficient in terms of P- and S-wave moduli, density, Thomsen's WA parameters, and fracture weaknesses in such an orthorhombic medium, which avoids the complicated nonlinear relationship between the orthorhombic anisotropy and azimuthal seismic reflection data. Incorporating azimuthal seismic data and Bayesian inversion theory, the maximum a posteriori solutions of Thomsen's WA parameters and fracture weaknesses in a weakly anisotropic medium with orthorhombic symmetry are reasonably estimated with the constraints of Cauchy a priori probability distribution and smooth initial models of model parameters to enhance the inversion resolution and the nonlinear iteratively reweighted least squares strategy. The synthetic examples containing a moderate noise demonstrate the feasibility of the derived orthorhombic anisotropic AVOaz inversion method, and the real data illustrate the inversion stabilities of orthorhombic anisotropy in a fractured reservoir.

Learning to become graduate students: Japanese women's experience in the research unit in engineering

NASA Astrophysics Data System (ADS)

Hosaka, Masako

2010-12-01

Based on the analysis of 16 interviews with women first-year master's students at two national engineering schools in Japan, this article examines the socialisation role of compulsory undergraduate research experience in Japanese women's decisions to pursue graduate education and choices of the programme. The findings suggest that research experiences in a small independent research unit within the major department convinced Japanese women engineering students of their academic and social success as graduate students in the current environment. Although participants generally adapted themselves to the research unit through their research, there is a variation in the degree to which they were smoothly integrated into the research unit, reflecting organisational and individual differences.

Use of LANDSAT 8 images for depth and water quality assessment of El Guájaro reservoir, Colombia

NASA Astrophysics Data System (ADS)

González-Márquez, Luis Carlos; Torres-Bejarano, Franklin M.; Torregroza-Espinosa, Ana Carolina; Hansen-Rodríguez, Ivette Renée; Rodríguez-Gallegos, Hugo B.

2018-03-01

The aim of this study was to evaluate the viability of using Landsat 8 spectral images to estimate water quality parameters and depth in El Guájaro Reservoir. On February and March 2015, two samplings were carried out in the reservoir, coinciding with the Landsat 8 images. Turbidity, dissolved oxygen, electrical conductivity, pH and depth were evaluated. Through multiple regression analysis between measured water quality parameters and the reflectance of the pixels corresponding to the sampling stations, statistical models with determination coefficients between 0.6249 and 0.9300 were generated. Results indicate that from a small number of measured parameters we can generate reliable models to estimate the spatial variation of turbidity, dissolved oxygen, pH and depth, as well the temporal variation of electrical conductivity, so models generated from Landsat 8 can be used as a tool to facilitate the environmental, economic and social management of the reservoir.

Fine-scale analysis of genetic structure in the brooding coral Seriatopora hystrix from the Red Sea

NASA Astrophysics Data System (ADS)

Maier, E.; Tollrian, R.; Nürnberger, B.

2009-09-01

The dispersal of gametes and larvae plays a key role in the population dynamics of sessile marine invertebrates. Species with internal fertilisation are often associated with very localised larval dispersal, which may cause small-scale patterns of neutral genetic variation. This study on the brooding coral Seriatopora hystrix from the Red Sea focused on the smallest possible scale: Two S. hystrix stands (~100 colonies each) near Dahab were completely sampled, mapped and analysed at five microsatellite markers. The sexual mode of reproduction, the likely occurrence of selfing and the level of immigration were in agreement with previous studies on this species. Contrary to previous findings, both stands were in Hardy-Weinberg proportions. Also, no evidence for spatially restricted larval dispersal within the sampled areas was found. Differences between this and previous studies on S. hystrix could reflect variation in life history or varying environmental conditions, which opens intriguing questions for future research.

Low-molecular-weight heparins: pharmacologic profile and product differentiation.

PubMed

Fareed, J; Jeske, W; Hoppensteadt, D; Clarizio, R; Walenga, J M

1998-09-10

The interchangeability of low-molecular-weight heparins (LMWHs) has been the subject of discussion since these products were first introduced for the prophylaxis of deep vein thrombosis. Experimental evidence now exists to show that LMWHs differ from each other in a number of characteristics. Products have been differentiated on the basis of molecular weight and biologic properties, but only limited information derived from the clinical setting is available. Potency has been described on the basis of anti-Factor Xa activity, but at equivalent anti-Xa activities, the anti-Factor IIa activity of different products shows marked variations. At the relatively small doses used for the management of postsurgical deep vein thrombosis, the effect of these interproduct differences may be relatively minor, but as LMWHs are developed for therapeutic use at much higher doses, such differences may become clinically important. Variations in safety and efficacy reported in clinical trials of LMWHs may reflect the known differences in their molecular composition and pharmacologic properties.

Strong intensity variations of laser feedback interferometer caused by atmospheric turbulence

NASA Astrophysics Data System (ADS)

Sun, Yiyi; Li, Zhiping

2003-05-01

The significant variation of the laser output can be caused by feedback of a small part of laser beam, which is reflected or backscattered by a target at a long distance from laser source, into the laser cavity. This paper describes and analyzes theoretically and experimentally the influence of atmospheric turbulence on interference caused by laser feedback. The influence depends upon both the energy of feedback into the laser cavity and the strength of turbulence over a laser propagation path in the atmosphere. In the case of stronger energy of feedback and weak turbulence variance of fluctuation of the laser output can be enhanced by hundreds to thousands times. From our measurements and theoretical analysis it shows thatthese significant enhancements can result from the change of laser-cavity-modes which can be stimulated simultaneously and from beat oscillations between a variety of frequencies of laser modes. This also can result from optical chaos inside the laser resonator because a non-separable distorted external cavity can become a prerequisite for optical chaos.

Radiation response of cubic mesoporous silicate and borosilicate thin films

NASA Astrophysics Data System (ADS)

Manzini, Ayelén; Alurralde, Martín; Luca, Vittorio

2018-01-01

The radiation response has been studied of cubic mesoporous silicate and borosilicate thin films having different boron contents prepared using the block copolymer template Brij 58 and the dip coating technique. The degree of pore ordering of the films was analysed using low-angle X-ray diffraction and film thickness measured by X-ray reflectivity. For films calcined at 350 °C, the incorporation of boron resulted in a reproducible oscillatory variation in the d-spacing and intensity of the primary reflection as a function of boron content. A clear peak was observed in the d-spacing at 5-10 mol% boron incorporation. For borosilicate films of a given composition an overall suppression of d-spacing was observed as a function of aging time relative to films that did not contain boron. This was ascribed to a slow condensation process. The films were irradiated in pile with neutrons and with iodine ions at energies of 180 keV and 70 MeV. Neutron irradiation of the silicate thin films for periods up to 30 days and aged for 400 days resulted in little reduction in either d-spacing or intensity of the primary low-angle X-ray reflection indicating that the films retained their mesopore ordering. In contrast borosilicate films for which the B (n, α) reaction was expected to result in enhanced displacement damage showed much larger variations in X-ray parameters. For these films short irradiation times resulted in a reduction of the d-spacing and intensity of the primary reflections considerably beyond that observed through aging. It is concluded that prolonged neutron irradiation and internal α irradiation have only a small, although measurable, impact on mesoporous borosilicate thin films increasing the degree of condensation and increasing unit cell contraction. When these borosilicate films were irradiated with iodine ions, more profound changes occurred. The pore ordering of the films was significantly degraded when low energy ions were used. In some cases the degree of damage was such that no low-angle reflection could be observed. This degradation of pore ordering was confirmed in scanning electron microscopy images of the irradiated films.

Milankovitch-scale correlations between deeply buried microbial populations and biogenic ooze lithology

USGS Publications Warehouse

Aiello, I.W.; Bekins, B.A.

2010-01-01

The recent discoveries of large, active populations of microbes in the subseafloor of the world's oceans supports the impact of the deep biosphere biota on global biogeochemical cycles and raises important questions concerning the functioning of these extreme environments for life. These investigations demonstrated that subseafloor microbes are unevenly distributed and that cell abundances and metabolic activities are often independent from sediment depths, with increased prokaryotic activity at geochemical and/or sedimentary interfaces. In this study we demonstrate that microbial populations vary at the scale of individual beds in the biogenic oozes of a drill site in the eastern equatorial Pacific (Ocean Drilling Program Leg 201, Site 1226). We relate bedding-scale changes in biogenic ooze sediment composition to organic carbon (OC) and microbial cell concentrations using high-resolution color reflectance data as proxy for lithology. Our analyses demonstrate that microbial concentrations are an order of magnitude higher in the more organic-rich diatom oozes than in the nannofossil oozes. The variations mimic small-scale variations in diatom abundance and OC, indicating that the modern distribution of microbial biomass is ultimately controlled by Milankovitch-frequency variations in past oceanographic conditions. ?? 2010 Geological Society of America.

Variations in interior morphology of 15-20 km lunar craters - Implications for a major subsurface discontinuity

NASA Technical Reports Server (NTRS)

De Hon, R. A.

1980-01-01

Craters vary in morphology as a function of crater diameter, age, and mode of origin. This study concentrates on the morphology of young lunar impact craters within a limited size range. Elimination of morphologic variations generally attributed to crater size or age leaves a small population which should nearly reflect the varying properties of the lunar substrate. The sample consists of 17 craters 15-20 km in diameter with both simple and complex morphologies. While depth/diameter ratios do not obviously differ between mare and highland subsets, apparent depth, rim height, and profile data do differ distinctly. Highland craters tend to be deep, simple, and bowl-shaped. Mare craters tend to be shallow and flat-floored. Rim heights of complex mare craters are typically greater than those of simple craters. Differences of highland and mare crater morphologies are attributed to variations in the thickness of the lunar megaregolith. Highland craters in this size range do not penetrate the megaregolith. The depth and morphology of complex craters are controlled by the discontinuity at the transition from highly brecciated megaregolith to more coherent crystalline material of the upper crust.

Stoichiometry, Metabolism and Nutrient Limitation Across the Periodic Table in Natural Flowing-Water Chemostats

NASA Astrophysics Data System (ADS)

Cohen, M. J.; Nifong, R. L.; Kurz, M. J.; Cropper, W. P.; Martin, J. B.

2014-12-01

Relative supplies of macro and micronutrients (C,N,P, various metals), along with light and water, controls ecosystem metabolism, trophic energy transfer and community structure. Here we test the hypothesis, using measurements from 41 spring-fed rivers in Florida, that tissue stoichiometry indicates autotroph nutrient limitation status. Low variation in discharge, temperature and chemical composition within springs, but large variation across springs creates an ideal setting to assess the relationship between limitation and resource supply. Molar N:P ranges from 0.4 to 90, subjecting autotrophs to dramatically different nutrient supply. Over this gradient, species-specific autotroph tissue C:N:P ratios are strictly homeostatic, and with no evidence that nutrient supply affects species composition. Expanding to include 19 metals and micronutrients revealed autotrophs are more plastic in response to micronutrient variation, particularly for iron and manganese whose supply fluxes are small compared to biotic demand. Using a Droop model modified to reflect springs conditions (benthic production, light limitation, high hydraulic turnover), we show that tissue stoichiometry transitions from homeostatic to plastic with the onset of nutrient limitation, providing a potentially powerful new tool for predicting nutrient limitation and thus eutrophication in flowing waters.

Chiral photonic crystals with an anisotropic defect layer.

PubMed

Gevorgyan, A H; Harutyunyan, M Z

2007-09-01

In the present paper we consider some properties of defect modes in chiral photonic crystals with an anisotropic defect layer. We solved the problem by Ambartsumian's layer addition method. We investigated the influence of the defect layer thickness variation and its location in the chiral photonic crystal (CPC) and also its optical axes orientation, as well as of CPC thickness variation on defect mode properties. Variations of the optical thickness of the defect layer have its impact on the defect mode linewidth and the light accumulation in the defect. We obtain that CPCs lose their base property at certain defect layer thicknesses; namely, they lose their diffraction reflection dependence on light polarization. We also show that the circular polarization handedness changes from right-handed to left-handed if the defect layer location is changed, and therefore, such systems can be used to create sources of elliptically polarized light with tunable ellipticity. Some nonreciprocity properties of such systems are investigated, too. In particular, it is also shown that such a system can work as a practically ideal wide band optical diode for circularly polarized incident light provided the defect layer thickness is properly chosen, and it can work as a narrow band diode at small defect layer thicknesses.

Snapping shrimp sound production patterns on Caribbean coral reefs: relationships with celestial cycles and environmental variables

NASA Astrophysics Data System (ADS)

Lillis, Ashlee; Mooney, T. Aran

2018-06-01

The rich acoustic environment of coral reefs, including the sounds of a variety of fish and invertebrates, is a reflection of the structural complexity and biological diversity of these habitats. Emerging interest in applying passive acoustic monitoring and soundscape analysis to measure coral reef habitat characteristics and track ecological patterns is hindered by a poor understanding of the most common and abundant sound producers on reefs—the snapping shrimp. Here, we sought to address several basic biophysical drivers of reef sound by investigating acoustic activity patterns of snapping shrimp populations on two adjacent coral reefs using a detailed snap detection analysis routine to a high-resolution 2.5-month acoustic dataset from the US Virgin Islands. The reefs exhibited strong diel and lunar periodicity in snap rates and clear spatial differences in snapping levels. Snap rates peaked at dawn and dusk and were higher overall during daytime versus nighttime, a seldom-reported pattern in earlier descriptions of diel snapping shrimp acoustic activity. Small differences between the sites in snap rate rhythms were detected and illustrate how analyses of specific soundscape elements might reveal subtle between-reef variation. Snap rates were highly correlated with environmental variables, including water temperature and light, and were found to be sensitive to changes in oceanographic forcing. This study further establishes snapping shrimp as key players in the coral reef chorus and provides evidence that their acoustic output reflects a combination of environmental conditions, celestial influences, and spatial habitat variation. Effective application of passive acoustic monitoring in coral reef habitats using snap rates or snapping-influenced acoustic metrics will require a mechanistic understanding of the underlying spatial and temporal variation in snapping shrimp sound production across multiple scales.

Is There Spectral Variation in the Polarized Reflectance of Leaves?

NASA Technical Reports Server (NTRS)

Vanderbilt, V. C.; Daughtry, C. S. T.; Biehl, L. L.

2014-01-01

The light scattered by plant canopies depends in part on the light scattering/absorbing properties of the leaves and is key to understanding the remote sensing process in the optical domain. Here we specifically looked for evidence of fine spectral detail in the polarized portion of the light reflected from the individual leaves of five species of plants measured at Brewsters angle over the wavelength range 450 to 2300nm. Our results show no strong, unambiguous evidence of narrow band spectral variation of the polarized portion of the reflectance factor.

Is there Spectral Variation in the Polarized Reflectance of Leaves?

NASA Technical Reports Server (NTRS)

Vanderbilt, V. C.; Daughtry, C. S. T.; Biehl, L. L.

2014-01-01

The light scattered by plant canopies depends in part on the light scattering/absorbing properties of the leaves and is key to understanding the remote sensing process in the optical domain. Here we specifically looked for evidence of fine spectral detail in the polarized portion of the light reflected from the individual leaves of five species of plants measured at Brewsters angle over the wavelength range 450 to 2300nm. Our results show no strong, unambiguous evidence of narrow band spectral variation of the polarized portion of the reflectance factor.

Developing Reflective Dispositions through Collaborative Knowledge-Building during Small Group Bible Study

ERIC Educational Resources Information Center

Toh, Tze Keong; Koh, Joyce Hwee Ling; Chai, Ching Sing

2017-01-01

This article explores the use of a constructivist pedagogical approach to cultivate reflective dispositions during small group Bible study. Conducted in a local church Bible class setting (n = 12), the instructional design emulated the reflective thinking process, while adopting collaborative knowledge-building as its pedagogical framework.…

A model of genetic variation for Pinus ponderosa in the Inland Northwest (U.S.A.): applications in gene resource management

Treesearch

Gerald Rehfeldt

1991-01-01

Models were developed to describe genetic variation among 201 seedling populations of Pinus ponderosa var. ponderosa in the Inland Northwest of the United States. Common-garden studies provided three variables Jhat reflected growth and development in field environments and three principal components of six variables that reflected patterns of shoot elongation....

Reflectance properties and hydrated material distribution on Vesta: Global investigation of variations and their relationship using improved calibration of Dawn VIR mapping spectrometer

NASA Astrophysics Data System (ADS)

Combe, Jean-Philippe; Ammannito, Eleonora; Tosi, Federico; De Sanctis, Maria Cristina; McCord, Thomas B.; Raymond, Carol A.; Russell, Christopher T.

2015-10-01

Vesta's surface albedo variations and hydrated material content share similar spatial distribution. This observation is consistent with carbonaceous chondrite meteorites as a likely source material for dark surface units observed by the Dawn spacecraft, as presented by numerous publications. While these deposits have been studied extensively by analysis of data from the Framing Camera (FC) and the Visible and Infrared Spectrometer (VIR), we performed a new analysis based on an improved calibration of VIR. First we identified instrument and calibration artifacts, and we therefore developed corrections of the VIR flat field and response function. Then we developed a photometric correction for Vesta based on the lunar model by Shkuratov et al. (Shkuratov, Yu.G. et al. [1999]. Icarus 141, 132-155. http://dx.doi.org/10.1006/icar.1999.6154), and a semi-analytical inversion of the photometric parameters. This photometric model combines minimization of the scattering effects due to the topography (a disk function) and variations of multiple-scattering with phase angle (the phase function) caused by microscopic physical properties of the regolith. The improved calibration and photometric correction enable more accurate analysis of the spectral properties of Vesta's surface material, especially the reflectance at 1.4 μm and the 2.8 μm hydroxyl absorption band depth. We produced global and quadrangle maps that are used as a common dataset for this Icarus special issue on Vesta's surface composition. The joint interpretation of both the 1.4 μm reflectance and the 2.8 μm absorption band depth reveals unusual spectral properties for a number of impact craters and ejecta compared to the rest of Vesta. An area including the Bellicia, Arruntia and Pomponia craters, where olivine might be present, has relatively high reflectance and a strong hydroxyl absorption band. Another area in the vicinity of Capparonia crater has a high content of hydrated materials, although with moderate reflectance and typical pyroxene-rich composition. Ejecta blankets west of Oppia crater have a spectral behavior similar to Capparonia, except for the wider and more complex shape of the hydroxyl absorption band. On the other hand, some low-hydrated areas associated to crater floors and ejecta have higher reflectance and steeper spectral slope than most low-hydrated terrains Vesta. A broad lane that extends from Rheasilvia rim at Matronalia Rupes to the northern regions hosts little to no hydrated materials and exhibits a moderate spectral slope, similar to Rheasilvia's basin floor. These properties reinforce the hypothesis that the lane is composed of ejecta from Rheasilvia, as indicated by the distribution of pyroxene compositions by previous results from Dawn. A few small and fresh craters exhibit an association between low-reflectance, little to no hydrated materials and a strong positive spectral slope, suggesting optical effects by opaque coatings, as opposed to carbonaceous chondrite deposits, and possible coarser grains.

Investigation of Tree Spectral Reflectance Characteristics Using a Mobile Terrestrial Line Spectrometer and Laser Scanner

PubMed Central

Lin, Yi; Puttonen, Eetu; Hyyppä, Juha

2013-01-01

In mobile terrestrial hyperspectral imaging, individual trees often present large variations in spectral reflectance that may impact the relevant applications, but the related studies have been seldom reported. To fill this gap, this study was dedicated to investigating the spectral reflectance characteristics of individual trees with a Sensei mobile mapping system, which comprises a Specim line spectrometer and an Ibeo Lux laser scanner. The addition of the latter unit facilitates recording the structural characteristics of the target trees synchronously, and this is beneficial for revealing the characteristics of the spatial distributions of tree spectral reflectance with variations at different levels. Then, the parts of trees with relatively low-level variations can be extracted. At the same time, since it is difficult to manipulate the whole spectrum, the traditional concept of vegetation indices (VI) based on some particular spectral bands was taken into account here. Whether the assumed VIs capable of behaving consistently for the whole crown of each tree was also checked. The specific analyses were deployed based on four deciduous tree species and six kinds of VIs. The test showed that with the help of the laser scanner data, the parts of individual trees with relatively low-level variations can be located. Based on these parts, the relatively stable spectral reflectance characteristics for different tree species can be learnt. PMID:23877127

A multilevel model for cardiovascular disease prevalence in the US and its application to micro area prevalence estimates.

PubMed

Congdon, Peter

2009-01-30

Estimates of disease prevalence for small areas are increasingly required for the allocation of health funds according to local need. Both individual level and geographic risk factors are likely to be relevant to explaining prevalence variations, and in turn relevant to the procedure for small area prevalence estimation. Prevalence estimates are of particular importance for major chronic illnesses such as cardiovascular disease. A multilevel prevalence model for cardiovascular outcomes is proposed that incorporates both survey information on patient risk factors and the effects of geographic location. The model is applied to derive micro area prevalence estimates, specifically estimates of cardiovascular disease for Zip Code Tabulation Areas in the USA. The model incorporates prevalence differentials by age, sex, ethnicity and educational attainment from the 2005 Behavioral Risk Factor Surveillance System survey. Influences of geographic context are modelled at both county and state level, with the county effects relating to poverty and urbanity. State level influences are modelled using a random effects approach that allows both for spatial correlation and spatial isolates. To assess the importance of geographic variables, three types of model are compared: a model with person level variables only; a model with geographic effects that do not interact with person attributes; and a full model, allowing for state level random effects that differ by ethnicity. There is clear evidence that geographic effects improve statistical fit. Geographic variations in disease prevalence partly reflect the demographic composition of area populations. However, prevalence variations may also show distinct geographic 'contextual' effects. The present study demonstrates by formal modelling methods that improved explanation is obtained by allowing for distinct geographic effects (for counties and states) and for interaction between geographic and person variables. Thus an appropriate methodology to estimate prevalence at small area level should include geographic effects as well as person level demographic variables.

A multilevel model for cardiovascular disease prevalence in the US and its application to micro area prevalence estimates

PubMed Central

Congdon, Peter

2009-01-01

Background Estimates of disease prevalence for small areas are increasingly required for the allocation of health funds according to local need. Both individual level and geographic risk factors are likely to be relevant to explaining prevalence variations, and in turn relevant to the procedure for small area prevalence estimation. Prevalence estimates are of particular importance for major chronic illnesses such as cardiovascular disease. Methods A multilevel prevalence model for cardiovascular outcomes is proposed that incorporates both survey information on patient risk factors and the effects of geographic location. The model is applied to derive micro area prevalence estimates, specifically estimates of cardiovascular disease for Zip Code Tabulation Areas in the USA. The model incorporates prevalence differentials by age, sex, ethnicity and educational attainment from the 2005 Behavioral Risk Factor Surveillance System survey. Influences of geographic context are modelled at both county and state level, with the county effects relating to poverty and urbanity. State level influences are modelled using a random effects approach that allows both for spatial correlation and spatial isolates. Results To assess the importance of geographic variables, three types of model are compared: a model with person level variables only; a model with geographic effects that do not interact with person attributes; and a full model, allowing for state level random effects that differ by ethnicity. There is clear evidence that geographic effects improve statistical fit. Conclusion Geographic variations in disease prevalence partly reflect the demographic composition of area populations. However, prevalence variations may also show distinct geographic 'contextual' effects. The present study demonstrates by formal modelling methods that improved explanation is obtained by allowing for distinct geographic effects (for counties and states) and for interaction between geographic and person variables. Thus an appropriate methodology to estimate prevalence at small area level should include geographic effects as well as person level demographic variables. PMID:19183458

Absorption line studies of reflection from horizontally inhomogeneous layers. [in cloudy planetary atmospheres

NASA Technical Reports Server (NTRS)

Appleby, J. F.; Van Blerkom, D. J.

1975-01-01

The article details an inhomogeneous reflecting layer (IRFL) model designed to survey absorption line behavior from a Squires-like cloud cover (which is characterized by convection cell structure). Computational problems and procedures are discussed in detail. The results show trends usually opposite to those predicted by a simple reflecting layer model. Per cent equivalent width variations for the tower model are usually somewhat greater for weak than for relatively strong absorption lines, with differences of a factor of about two or three. IRFL equivalent width variations do not differ drastically as a function of geometry when the total volume of absorbing gas is held constant. The IRFL results are in many instances consistent with observed equivalent width variations of Jupiter, Saturn, and Venus.

Assessing the link between coastal urbanization and the quality of nekton habitat in mangrove tidal tributaries

USGS Publications Warehouse

Krebs, Justin M.; Bell, Susan S.; McIvor, Carole C.

2014-01-01

To assess the potential influence of coastal development on habitat quality for estuarine nekton, we characterized body condition and reproduction for common nekton from tidal tributaries classified as undeveloped, industrial, urban or man-made (i.e., mosquito-control ditches). We then evaluated these metrics of nekton performance, along with several abundance-based metrics and community structure from a companion paper (Krebs et al. 2013) to determine which metrics best reflected variation in land-use and in-stream habitat among tributaries. Body condition was not significantly different among undeveloped, industrial, and man-made tidal tributaries for six of nine taxa; however, three of those taxa were in significantly better condition in urban compared to undeveloped tributaries. Palaemonetes shrimp were the only taxon in significantly poorer condition in urban tributaries. For Poecilia latipinna, there was no difference in body condition (length–weight) between undeveloped and urban tributaries, but energetic condition was significantly better in urban tributaries. Reproductive output was reduced for both P. latipinna (i.e., fecundity) and grass shrimp (i.e., very low densities, few ovigerous females) in urban tributaries; however a tradeoff between fecundity and offspring size confounded meaningful interpretation of reproduction among land-use classes for P. latipinna. Reproductive allotment by P. latipinna did not differ significantly among land-use classes. Canonical correspondence analysis differentiated urban and non-urban tributaries based on greater impervious surface, less natural mangrove shoreline, higher frequency of hypoxia and lower, more variable salinities in urban tributaries. These characteristics explained 36 % of the variation in nekton performance, including high densities of poeciliid fishes, greater energetic condition of sailfin mollies, and low densities of several common nekton and economically important taxa from urban tributaries. While variation among tributaries in our study can be largely explained by impervious surface beyond the shorelines of the tributary, variation in nekton metrics among non-urban tributaries was better explained by habitat factors within the tributary and along the shorelines. Our results support the paradigm that urban development in coastal areas has the potential to alter habitat quality in small tidal tributaries as reflected by variation in nekton performance among tributaries from representative land-use classes.

Osmium isotope variations in the Pacific mantle: implications for the distribution of heterogeneity in the convecting mantle

NASA Astrophysics Data System (ADS)

Ishikawa, A.; Senda, R.; Suzuki, K.; Tani, K.; Ishii, T.

2015-12-01

Recent accumulation of Os isotope data obtained either from abyssal peridotites or from ocean island peridotite xenoliths has clearly demonstrated that the modern convecting mantle is substantially heterogeneous in Os-isotope composition. Unlike other radiogenic isotope heterogeneities observed in oceanic basalts, largely controlled by incorporation of recycled crustal materials, it seems likely that the observed range of Os-isotope compositions in oceanic peridotites directly reflect varying degrees of ancient melt extraction from peridotitic mantle. Hence, global variations of Os-isotope compositions in oceanic peridotites may provide an important piece of information in unraveling the geochemical and geodynamic evolution of the convecting mantle. Here we present the Os-isotope variations in peridotite-serpentinite recovered from the Pacific area because the number of data available is yet scarce when compared with data from other oceans (Atlantic, Arctic and Indian Ocean). Our primary purpose is to test whether mantle domains underlying four major oceans are distinct in terms of Os isotope variations, reflecting the pattern of mantle convection or mixing efficiency. We examined 187Os/188Os ratios and highly siderophile element concentrations in serpentinized harzburgite recovered from Hess Deep in the East Pacific Rise, a mantle section in the Taitao ophiolite, Chile (Schulte et al., 2009), serpentinized harzburgite bodies in the Izu-Ogasawara and Tonga forearc (Parkinson et al., 1998), peridotite xenoliths from the Pali-Kaau vent in O'ahu island, Hawaii (Bizimis et al., 2007), and low-temperature type peridotite xenoliths from Malaita, Solomon Islands (Ishikawa et al., 2011). The results demonstrate that samples from each area display very similar Os-isotope variations with a pronounced peak in 187Os/188Os = 0.125-0.128. Moreover, the relatively larger datasets obtained from Hess Deep, Taitao and Malaita clearly exhibit the presence of secondary peak in 187Os/188Os=0.117-0.119 (Re-depletion ages ~1.5 Ga). These characteristics are almost identical to the global population mainly comprised of data from other oceans. This suggests that small-scale heterogeneities created by ancient melt extraction are homogeneously distributed over large scales within the convecting mantle.

Group size and visitor numbers predict faecal glucocorticoid concentrations in zoo meerkats

PubMed Central

Scott, Katy; Heistermann, Michael

2017-01-01

Measures of physiological stress in zoo animals can give important insights into how they are affected by aspects of their captive environment. We analysed the factors influencing variation in glucocorticoid metabolites in faeces (fGCs) from zoo meerkats as a proxy for blood cortisol concentration, high levels of which are associated with a stress response. Levels of fGCs in captive meerkats declined with increasing group size. In the wild, very small groups of meerkats are at a higher risk of predation, while in larger groups, there is increased competition for resources. Indeed, group sizes in captivity resemble those seen in unstable coalitions in the wild, which may represent a stressful condition and predispose meerkats to chronic stress, even in the absence of natural predators. Individuals in large enclosures showed lower levels of stress, but meerkat density had no effect on the stress measures. In contrast with data from wild meerkats, neither sex, age nor dominance status predicted stress levels, which may reflect less food stress owing to more equal access to resources in captivity versus wild. The median number of visitors at the enclosure was positively correlated with fGC concentrations on the following day, with variation in the visitor numbers having the opposite effect. Our results are consistent with the hypothesis that there is an optimum group size which minimizes physiological stress in meerkats, and that zoo meerkats at most risk of physiological stress are those kept in small groups and small enclosures and are exposed to consistently high numbers of visitors. PMID:28484620

Group size and visitor numbers predict faecal glucocorticoid concentrations in zoo meerkats.

PubMed

Scott, Katy; Heistermann, Michael; Cant, Michael A; Vitikainen, Emma I K

2017-04-01

Measures of physiological stress in zoo animals can give important insights into how they are affected by aspects of their captive environment. We analysed the factors influencing variation in glucocorticoid metabolites in faeces (fGCs) from zoo meerkats as a proxy for blood cortisol concentration, high levels of which are associated with a stress response. Levels of fGCs in captive meerkats declined with increasing group size. In the wild, very small groups of meerkats are at a higher risk of predation, while in larger groups, there is increased competition for resources. Indeed, group sizes in captivity resemble those seen in unstable coalitions in the wild, which may represent a stressful condition and predispose meerkats to chronic stress, even in the absence of natural predators. Individuals in large enclosures showed lower levels of stress, but meerkat density had no effect on the stress measures. In contrast with data from wild meerkats, neither sex, age nor dominance status predicted stress levels, which may reflect less food stress owing to more equal access to resources in captivity versus wild. The median number of visitors at the enclosure was positively correlated with fGC concentrations on the following day, with variation in the visitor numbers having the opposite effect. Our results are consistent with the hypothesis that there is an optimum group size which minimizes physiological stress in meerkats, and that zoo meerkats at most risk of physiological stress are those kept in small groups and small enclosures and are exposed to consistently high numbers of visitors.

Reflectance of vegetation, soil, and water

NASA Technical Reports Server (NTRS)

Wiegand, C. L. (Principal Investigator)

1974-01-01

The author has identified the following significant results. The Kubelka-Munk model, a regression model, and a combination of these models were used to extract plant, soil, and shadow reflectance components of vegetated surfaces. The combination model was superior to the others; it explained 86% of the variation in band 5 reflectance of corn and sorghum, and 90% of the variation in band 6 reflectance of cotton. A fractional shadow term substantially increased the proportion of the digital count sum of squares explained when plant parameters alone explained 85% or less of the variation. Overall recognition of 94 agricultural fields using simultaneously acquired aircraft and spacecraft MSS data was 61.8 and 62.8%, respectively; recognition of vegetable fields larger than 10 acres and taller than 25 cm, rose to 88.9 and 100% for aircraft and spacecraft, respectively. Agriculture and rangeland, were well discriminated for the entire county but level 2 categories of vegetables, citrus, and idle cropland, except for citrus, were not.

Nano-scale optical circuits and self-organized lightwave network (SOLNET) fabricated using sol-gel materials with photo-induced refractive index increase

NASA Astrophysics Data System (ADS)

Ono, Shigeru; Yoshimura, Tetsuzo; Sato, Tetsuo; Oshima, Juro

2009-02-01

Recently, Nissan Chemical Industries, LTD, developed the photo-induced refractive index variation sol-gel materials, in which the refractive index increases from 1.65 to 1.85 by ultra-violet (UV) light exposure and baking. The materials enable us to fabricate high-index-contract waveguides without developing/etching processes and strong-lightconfinement self-organized lightwave network (SOLNET). Therefore, the materials are expected promising for nanoscale optical circuits with self-alignment capability. Nano-scale optical circuits with core thickness of ~230 nm and core width of ~1 μm were fabricated. Propagation loss was 1.86 dB/cm for TE mode and 1.89 dB/cm for TM mode at 633 nm in wavelength, indicating that there were small polarization dependences. Spot sizes of guided beams along core width direction and along core thickness direction were respectively 0.6 μm and 0.3 μm for both TE and TM mode. Bending loss of S-bending waveguides was reduced from 0.44 dB to 0.24 dB for TE mode with increasing the bending curvature radius from 5 μm to 60 μm. Difference in bending loss between TM and TE mode was less than 10%. Branching loss of Y-branching waveguides was reduced from 1.33 dB to 0.08 dB for TE mode, and from 1.34 dB to 0.12 dB for TM mode with decreasing the branching angle from 80° to 20°. These results indicate that the photoinduced refractive index variation sol-gel materials can realize miniaturized optical circuits with sizes of several tens μm and guided beam confinement within a cross-section area less than 1.0 μm2 with small polarization dependences, suggesting potential applications to intra-chip optical interconnects. In addtion, we fabricated self-organized lightwave network (SOLNET) using the photo-induced refractive index variation sol-gel materials. When write beams of 405 nm in wavelength were introduced into the sol-gel thin film under baking at 200°C, self-focusing was induced, and SOLNET was formed. SOLNET fabricated by low write beam intensity exhibited strong light confinement. Furthermore, SOLNET was found to be drawn automatically to reflective portion such as a defect and a silver paste droplet in the sol-gel thin film during SOLNET formation, indicating that reflective SOLNET is formed. The results suggest that the photo-induced refractive index variation sol-gel materials can provide self-alignment capability to the nano-scale optical circuits.

Visibility vs. biomass in flowers: exploring corolla allocation in Mediterranean entomophilous plants.

PubMed

Herrera, Javier

2009-05-01

While pollinators may in general select for large, morphologically uniform floral phenotypes, drought stress has been proposed as a destabilizing force that may favour small flowers and/or promote floral variation within species. The general validity of this concept was checked by surveying a taxonomically diverse array of 38 insect-pollinated Mediterranean species. The interplay between fresh biomass investment, linear size and percentage corolla allocation was studied. Allometric relationships between traits were investigated by reduced major-axis regression, and qualitative correlates of floral variation explored using general linear-model MANOVA. Across species, flowers were perfectly isometrical with regard to corolla allocation (i.e. larger flowers were just scaled-up versions of smaller ones and vice versa). In contrast, linear size and biomass varied allometrically (i.e. there were shape variations, in addition to variations in size). Most floral variables correlated positively and significantly across species, except corolla allocation, which was largely determined by family membership and floral symmetry. On average, species with bilateral flowers allocated more to the corolla than those with radial flowers. Plant life-form was immaterial to all of the studied traits. Flower linear size variation was in general low among conspecifics (coefficients of variation around 10 %), whereas biomass was in general less uniform (e.g. 200-400 mg in Cistus salvifolius). Significant among-population differences were detected for all major quantitative floral traits. Flower miniaturization can allow an improved use of reproductive resources under prevailingly stressful conditions. The hypothesis that flower size reflects a compromise between pollinator attraction, water requirements and allometric constraints among floral parts is discussed.

Non-ARC solution to metal reflective notching: its evaluation and selection

NASA Astrophysics Data System (ADS)

Buffat, Stephen J.

1997-07-01

Patterning photoresists on reflective topography such as aluminum is one of the more difficult problems in device manufacturing. Interference effects caused by reflected light from the substrate/photoresist interface and surface topography result in coupling of additional energy into the film. This leads to linewidth variation known as reflective notching which severely impacts process latitude and increases critical dimension variation. For many years, suppliers approached the problem by adding dyes that absorb in the actinic region to create a larger non-bleachable absorption. In recent years, strongly absorbing intermediate layers or ARC's, both organic and inorganic, have seen widespread implementation to control reflective notching. However, if a fab is not equipped to accommodate the required ARC process, the processing can be very time consuming, cumbersome and costly. This study was undertaken to determine if a non-ARC, i-line photoresist process could be developed to reduce or eliminate aluminum reflective notching and accompanying critical dimension variation. This study was designed to screen, identify, and characterize various resist chemistries. Based on the screening characterization, a final, cost effective resist chemistry without ARC was selected, fully characterized and transferred into production. The selected material is currently being used in a high volume 0.60 micrometers CMOS, 200 mm wafer manufacturing process.

Teaching Softly in Hard Environments: Meanings of Small-Group Reflective Teaching to Clinical Faculty

ERIC Educational Resources Information Center

Whiting, Ellen; Wear, Delese; Aultman, Julie M.; Zupp, Laurie

2012-01-01

A vast literature exists on teaching reflection and reflective practice to trainees in small groups, yet with few exceptions the literature does not address the benefits of these interactions to faculty. Like multiculturalism or cultural competency, the literature assumes that faculty have themselves "achieved" these propensities and…

Evolution of ring-field systems in microlithography

NASA Astrophysics Data System (ADS)

Williamson, David M.

1998-09-01

Offner's ring-field all-reflecting triplet was the first successful projection system used in microlithography. It evolved over several generations, increasing NA and field size, reducing the feature sizes printed from three down to one micron. Because of its relative simplicity, large field size and broad spectral bandwidth it became the dominant optical design used in microlithography until the early 1980's, when the demise of optical lithography was predicted. Rumours of the death of optics turned out to be exaggerated; what happened instead was a metamorphosis to more complex optical designs. A reduction ring-field system was developed, but the inevitable loss of concentricity led to a dramatic increase in complexity. Higher NA reduction projection optics have therefore been full-field, either all-refracting or catadioptric using a beamsplitter and a single mirror. At the present time, the terminal illness of optical lithography is once again being prognosed, but now at 0.1 micro feature sizes early in the next millenium. If optics has a future beyond that, it lies at wavelengths below the practical transmission cut-off of all refracting materials. Scanning all-reflecting ring-field systems are therefore poised for a resurgence, based on their well-established advantage of rotational symmetry and consequent small aberration variations over a small, annular field. This paper explores some such designs that potentially could take optical lithography down to the region of 0.025 micron features.

Numerous Transitions of Sex Chromosomes in Diptera

PubMed Central

Vicoso, Beatriz; Bachtrog, Doris

2015-01-01

Many species groups, including mammals and many insects, determine sex using heteromorphic sex chromosomes. Diptera flies, which include the model Drosophila melanogaster, generally have XY sex chromosomes and a conserved karyotype consisting of six chromosomal arms (five large rods and a small dot), but superficially similar karyotypes may conceal the true extent of sex chromosome variation. Here, we use whole-genome analysis in 37 fly species belonging to 22 different families of Diptera and uncover tremendous hidden diversity in sex chromosome karyotypes among flies. We identify over a dozen different sex chromosome configurations, and the small dot chromosome is repeatedly used as the sex chromosome, which presumably reflects the ancestral karyotype of higher Diptera. However, we identify species with undifferentiated sex chromosomes, others in which a different chromosome replaced the dot as a sex chromosome or in which up to three chromosomal elements became incorporated into the sex chromosomes, and others yet with female heterogamety (ZW sex chromosomes). Transcriptome analysis shows that dosage compensation has evolved multiple times in flies, consistently through up-regulation of the single X in males. However, X chromosomes generally show a deficiency of genes with male-biased expression, possibly reflecting sex-specific selective pressures. These species thus provide a rich resource to study sex chromosome biology in a comparative manner and show that similar selective forces have shaped the unique evolution of sex chromosomes in diverse fly taxa. PMID:25879221

Environmental effects of hydrothermal alteration and historical mining on water and sediment quality in Central Colorado

USGS Publications Warehouse

Church, S.E.; Fey, D. L.; Klein, T.L.; Schmidt, T.S.; Wanty, R.B.; deWitt, E.H.; Rockwell, B.W.; San, Juan C.A.

2009-01-01

The U.S. Geological Survey conducted an environmental assessment of 198 catchments in a 54,000-km2 area of central Colorado, much of which is on Federal land. The Colorado Mineral Belt, a northeast-trending zone of historical base- and precious-metal mining, cuts diagonally across the study area. The investigation was intended to test the hypothesis that degraded water and sediment quality are restricted to catchments in which historical mining has occurred. Water, streambed sediment, and aquatic insects were collected from (1) catchments underlain by single lithogeochemical units, some of which were hydrothermally altered, that had not been prospected or mined; (2) catchments that contained evidence of prospecting, most of which contain hydrothermally altered rock, but no historical mining; and (3) catchments, all of which contain hydrothermally altered rock, where historical but now inactive mines occur. Geochemical data determined from catchments that did not contain hydrothermal alteration or historical mines met water quality criteria and sediment quality guidelines. Base-metal concentrations from these types of catchments showed small geochemical variations that reflect host lithology. Hydrothermal alteration and mineralization typically are associated with igneous rocks that have intruded older bedrock in a catchment. This alteration was regionally mapped and characterized primarily through the analysis of remote sensing data acquired by the ASTER satellite sensor. Base-metal concentrations among unaltered rock types showed small geochemical variations that reflect host lithology. Base-metal concentrations were elevated in sediment from catchments underlain by hydrothermally altered rock. Classification of catchments on the basis of mineral deposit types proved to be an efficient and accurate method for discriminating catchments that have degraded water and sediment quality. Only about 4.5 percent of the study area has been affected by historical mining, whereas a larger part of the study area is underlain by hydrothermally altered rock that has weathered to produce water and sediment with naturally elevated geochemical baselines. 

First year specialist trainees' engagement with reflective practice in the e-portfolio.

PubMed

McNeill, Helen; Brown, Jeremy M; Shaw, Nigel J

2010-10-01

Doctors in specialist training posts in the Mersey Deanery are expected to reflect on their clinical practice and to document their learning experiences in an e-portfolio. This study aims specifically to explore how they have engaged in reflection on their practice and how they utilise their learning portfolio to document evidence of this. A modified Delphi technique was used to develop a grading system to identify the level of reflection recorded by participants in the e-portfolio. Transcripts of the reflective accounts were then analysed using a qualitative approach which involved coding and categorising the data. This study demonstrated a wide variation in both the quantity and quality of reflection. Of particular note in the qualitative data analysis were themes relating to clinical knowledge and skills, learning in practice, communication, feelings, types of learning experience reflected on and wider aspects of medical practice. Findings indicate there is variation is the extent to which doctors both engage in and document evidence of reflection. Further research is needed to explore factors that enable or inhibit the use of the e-portfolio for reflection and whether recorded reflection is a true picture of the cognitive process involved.

Small-Signal Analysis of Autonomous Hybrid Distributed Generation Systems in Presence of Ultracapacitor and Tie-Line Operation

NASA Astrophysics Data System (ADS)

Ray, Prakash K.; Mohanty, Soumya R.; Kishor, Nand

2010-07-01

This paper presents small-signal analysis of isolated as well as interconnected autonomous hybrid distributed generation system for sudden variation in load demand, wind speed and solar radiation. The hybrid systems comprise of different renewable energy resources such as wind, photovoltaic (PV) fuel cell (FC) and diesel engine generator (DEG) along with the energy storage devices such as flywheel energy storage system (FESS) and battery energy storage system (BESS). Further ultracapacitors (UC) as an alternative energy storage element and interconnection of hybrid systems through tie-line is incorporated into the system for improved performance. A comparative assessment of deviation of frequency profile for different hybrid systems in the presence of different storage system combinations is carried out graphically as well as in terms of the performance index (PI), ie integral square error (ISE). Both qualitative and quantitative analysis reflects the improvements of the deviation in frequency profiles in the presence of the ultracapacitors (UC) as compared to other energy storage elements.

Simulations of Ground Motion in Southern California based upon the Spectral-Element Method

NASA Astrophysics Data System (ADS)

Tromp, J.; Komatitsch, D.; Liu, Q.

2003-12-01

We use the spectral-element method to simulate ground motion generated by recent well-recorded small earthquakes in Southern California. Simulations are performed using a new sedimentary basin model that is constrained by hundreds of petroleum industry well logs and more than twenty thousand kilometers of seismic reflection profiles. The numerical simulations account for 3D variations of seismic wave speeds and density, topography and bathymetry, and attenuation. Simulations for several small recent events demonstrate that the combination of a detailed sedimentary basin model and an accurate numerical technique facilitates the simulation of ground motion at periods of 2 seconds and longer inside the Los Angeles basin and 6 seconds and longer elsewhere. Peak ground displacement, velocity and acceleration maps illustrate that significant amplification occurs in the basin. Centroid-Moment Tensor mechanisms are obtained based upon Pnl and surface waveforms and numerically calculated 3D Frechet derivatives. We use a combination of waveform and waveform-envelope misfit criteria, and facilitate pure double-couple or zero-trace moment-tensor inversions.

Examining the utility of bulk otolith δ13C to describe diet in wild-caught black rockfish Sebastes melanops

USGS Publications Warehouse

von Biela, Vanessa; Newsome, Seth D.; Zimmerman, Christian E.

2015-01-01

Otolith carbon isotope δ13C values may provide temporally resolved diet proxies in fish. If otolith δ13C values reflect diet, isotope values from recent otolith and muscle tissue should correlate and known ontogenetic diet shifts should be reflected in comparisons between otolith material deposited during different life history stages. We analyzed paired otolith and muscle samples for δ13C from black rockfish Sebastes melanops to examine the potential of otoliths to reflect diet in small (200-299 mm fork length) and large (≥300 mm) fish. We found a significant positive regression between δ13C values from recent (~12 mo) otolith material and muscle in large fish, but not in small fish. Within individual otoliths, δ13C values were enriched by ~3‰ in recent otolith edge material compared to age-0 otolith core material and were consistent with known nearshore-offshore gradients in δ13C values at the base of the food web. Bulk otolith δ13C appeared to provide a broad indicator of dietary carbon sources, but variation in metabolism and dissolved inorganic carbon δ13C among and within individuals likely influences otolith δ13C as well and limits precision. Nevertheless, the results are promising and bulk otolith δ13C may be an appropriate tool to examine large trophic and ecosystem level shifts that have occurred concurrently with changes in habitat, commercial fishing, invasive species, climate change, and other direct or indirect human impacts using historic or ancient otoliths. Future studies should continue to consider the utility of bulk otolith δ13C to describe diet in other marine fish using this simple approach.

Multiple intermediates on the energy landscape of a 15-HEAT-repeat protein

PubMed Central

Tsytlonok, Maksym; Craig, Patricio O.; Sivertsson, Elin; Serquera, David; Perrett, Sarah; Best, Robert B.; Wolynes, Peter G.; Itzhaki, Laura S.

2014-01-01

Repeat proteins are a special class of modular, non-globular proteins composed of small structural motifs arrayed to form elongated architectures and stabilised solely by short-range contacts. We find a remarkable complexity in the unfolding of the large HEAT repeat protein PR65/A. In contrast to what has been seen for small repeat proteins in which unfolding propagates from one end, the HEAT array of PR65/A ruptures at multiple distant sites, leading to intermediate states with non-contiguous folded subdomains. Kinetic analysis allows us to define a network of intermediates and to delineate the pathways that connect them. There is a dominant sequence of unfolding, reflecting a non-uniform distribution of stability across the repeat array; however the unfolding of certain intermediates is competitive, leading to parallel pathways. Theoretical models accounting for the heterogeneous contact density in the folded structure are able to rationalize the variation in stability across the array. This variation in stability also suggests how folding may direct function in a large repeat protein: The stability distribution enables certain regions to present rigid motifs for molecular recognition while affording others flexibility to broaden the search area as in a fly-casting mechanism. Thus PR65/A uses the two ends of the repeat array to bind diverse partners and thereby coordinate the dephosphorylation of many different substrates and of multiple sites within hyperphosphorylated substrates. PMID:24120762

In situ monitoring of laser-induced periodic surface structures formation on polymer films by grazing incidence small-angle X-ray scattering.

PubMed

Rebollar, Esther; Rueda, Daniel R; Martín-Fabiani, Ignacio; Rodríguez-Rodríguez, Álvaro; García-Gutiérrez, Mari-Cruz; Portale, Giuseppe; Castillejo, Marta; Ezquerra, Tiberio A

2015-04-07

The formation of laser-induced periodic surface structures (LIPSS) on model spin-coated polymer films has been followed in situ by grazing incidence small-angle X-ray scattering (GISAXS) using synchrotron radiation. The samples were irradiated at different repetition rates ranging from 1 up to 10 Hz by using the fourth harmonic of a Nd:YAG laser (266 nm) with pulses of 8 ns. Simultaneously, GISAXS patterns were acquired during laser irradiation. The variation of both the GISAXS signal with the number of pulses and the LIPSS period with laser irradiation time is revealing key kinetic aspects of the nanostructure formation process. By considering LIPSS as one-dimensional paracrystalline lattice and using a correlation found between the paracrystalline disorder parameter, g, and the number of reflections observed in the GISAXS patterns, the variation of the structural order of LIPSS can be assessed. The role of the laser repetition rate in the nanostructure formation has been clarified. For high pulse repetition rates (i.e., 10 Hz), LIPSS evolve in time to reach the expected period matching the wavelength of the irradiating laser. For lower pulse repetition rates LIPSS formation is less effective, and the period of the ripples never reaches the wavelength value. Results support and provide information on the existence of a feedback mechanism for LIPSS formation in polymer films.

Aerial photographic water color variations from pollution in the James River

NASA Technical Reports Server (NTRS)

Bressette, W. E.

1978-01-01

A photographic flight was made over the James River on May 17, 1977. The data show that, in general, James River water has very high sunlight reflectance. In the Bailey Bay area this reflectance is drastically reduced. Also shown is a technique for normalizing off-axis variations in radiance film exposure from camera falloff and uneven sunlight conditions to the nadir value. After data normalization, a spectral analysis is performed that identifies Bailey Creek water in James River water. The spectral results when compared with laboratory spectrometer data indicate that reflectance from James River water is dominated by suspended matter, while the substance most likely responsible for reduced reflectance in Bailey Creek water is dissolved organic carbon.

A framework for quantifying the impacts of sub-pixel reflectance variance and covariance on cloud optical thickness and effective radius retrievals based on the bi-spectral method

NASA Astrophysics Data System (ADS)

Zhang, Z.; Werner, F.; Cho, H.-M.; Wind, G.; Platnick, S.; Ackerman, A. S.; Di Girolamo, L.; Marshak, A.; Meyer, Kerry

2017-02-01

The so-called bi-spectral method retrieves cloud optical thickness (τ) and cloud droplet effective radius (re) simultaneously from a pair of cloud reflectance observations, one in a visible or near infrared (VIS/NIR) band and the other in a shortwave-infrared (SWIR) band. A cloudy pixel is usually assumed to be horizontally homogeneous in the retrieval. Ignoring sub-pixel variations of cloud reflectances can lead to a significant bias in the retrieved τ and re. In this study, we use the Taylor expansion of a two-variable function to understand and quantify the impacts of sub-pixel variances of VIS/NIR and SWIR cloud reflectances and their covariance on the τ and re retrievals. This framework takes into account the fact that the retrievals are determined by both VIS/NIR and SWIR band observations in a mutually dependent way. In comparison with previous studies, it provides a more comprehensive understanding of how sub-pixel cloud reflectance variations impact the τ and re retrievals based on the bi-spectral method. In particular, our framework provides a mathematical explanation of how the sub-pixel variation in VIS/NIR band influences the re retrieval and why it can sometimes outweigh the influence of variations in the SWIR band and dominate the error in re retrievals, leading to a potential contribution of positive bias to the re retrieval.

A Framework for Quantifying the Impacts of Sub-Pixel Reflectance Variance and Covariance on Cloud Optical Thickness and Effective Radius Retrievals Based on the Bi-Spectral Method.

NASA Technical Reports Server (NTRS)

Zhang, Z; Werner, F.; Cho, H. -M.; Wind, Galina; Platnick, S.; Ackerman, A. S.; Di Girolamo, L.; Marshak, A.; Meyer, Kerry

2017-01-01

The so-called bi-spectral method retrieves cloud optical thickness (t) and cloud droplet effective radius (re) simultaneously from a pair of cloud reflectance observations, one in a visible or near infrared (VIS/NIR) band and the other in a shortwave-infrared (SWIR) band. A cloudy pixel is usually assumed to be horizontally homogeneous in the retrieval. Ignoring sub-pixel variations of cloud reflectances can lead to a significant bias in the retrieved t and re. In this study, we use the Taylor expansion of a two-variable function to understand and quantify the impacts of sub-pixel variances of VIS/NIR and SWIR cloud reflectances and their covariance on the t and re retrievals. This framework takes into account the fact that the retrievals are determined by both VIS/NIR and SWIR band observations in a mutually dependent way. In comparison with previous studies, it provides a more comprehensive understanding of how sub-pixel cloud reflectance variations impact the t and re retrievals based on the bi-spectral method. In particular, our framework provides a mathematical explanation of how the sub-pixel variation in VIS/NIR band influences the re retrieval and why it can sometimes outweigh the influence of variations in the SWIR band and dominate the error in re retrievals, leading to a potential contribution of positive bias to the re retrieval.

Advances in Measuring Soil Moisture using Global Navigation Satellite Systems Interferometric Reflectometry (GNSS-IR)

NASA Astrophysics Data System (ADS)

Moore, A. W.; Small, E. E.; Owen, S. E.; Hardman, S. H.; Wong, C.; Freeborn, D. J.; Larson, K. M.

2016-12-01

GNSS Interferometric Reflectometry (GNSS-IR) uses GNSS signals reflected off the land to infer changes in the near-antenna environment and monitor fluctuations in soil moisture, as well as other related hydrologic variables: snow depth/snow water equivalent (SWE), vegetation water content, and water level [Larson and Small, 2013; McCreight, et al., 2014; Larson et al., 2013]. GNSS instruments installed by geoscientists and surveyors to measure land motions can measure soil moisture fluctuations with accuracy (RMSE <0.04 cm3/cm3 [Small et al., 2016]) and latency sufficient for many applications (e.g., weather forecasting, climate studies, satellite validation). The soil moisture products have a unique and complementary footprint intermediate in scale between satellite and standard in situ sensors. Variations in vegetation conditions introduce considerable errors, but algorithms have been developed to address this issue [Small et al., 2016]. A pilot project (PBO H2O) using 100+ GPS sites in the western U.S. (Figure 1) from a single network (the Plate Boundary Observatory) has been operated by the University of Colorado (CU) at http://xenon.colorado.edu/portal since October 2012. JPL and CU are funded by NASA ESTO to refactor the PBO H2O software within an Apache OODT framework for robust operational analysis of soil moisture data and auto-configuration when new stations are added. We will report progress on the new GNSS H2O analysis portal, and plans to expand to global networks and from GPS to other GNSS signals. ReferencesLarson, K. M., & Small, E. E. (2013) Eos, 94(52), 505-512. McCreight, J. L., Small, E. E., & Larson, K. M. (2014). Water Resour. Res., 50(8), 6892-6909. Larson, K. M., Ray, R. D., Nievinski, F. G., & Freymueller, J. T. (2013). IEEE Geosci Remote S, 10(5), 1200-1204. Small, E. E., Larson, K. M., Chew, C. C., Dong, J., & Ochsner, T. E. (2016). IEEE J Sel. Top. Appl. PP(39). Figure 1: (R) Western U.S. GPS-IR soil moisture sites. (L): Products derived from GNSS reflection data for (clockwise from upper left) vegetation water content, SWE, sea level, and volumetric soil moisture.

The effect of small variations in profile of airfoils

NASA Technical Reports Server (NTRS)

Ward, Kenneth E

1931-01-01

This report deals with the effect of small variations in ordinates specified by different laboratories for the airfoil section. This study was made in connection with a more general investigation of the effect of small irregularities of the airfoil surface on the aerodynamic characteristics of an airfoil. These tests show that small changes in airfoil contours, resulting from variations in the specified ordinates, have a sufficiently large effect upon the airfoil characteristics to justify the taking of great care in the specification of ordinates for the construction of models.

Profiles of environmental contaminants in hawksbill turtle egg yolks reflect local to distant pollution sources among nesting beaches in the Yucatán Peninsula, Mexico.

PubMed

Muñoz, Cynthia C; Vermeiren, Peter

2018-04-01

Knowledge of spatial variation in pollutant profiles among sea turtle nesting locations is limited. This poses challenges in identifying processes shaping this variability and sets constraints to the conservation management of sea turtles and their use as biomonitoring tools for environmental pollutants. We aimed to increase understanding of the spatial variation in polycyclic aromatic hydrocarbon (PAH), organochlorine pesticide (OCP) and polychlorinated biphenyl (PCB) compounds among nesting beaches. We link the spatial variation to turtle migration patterns and the persistence of these pollutants. Specifically, using gas chromatography, we confirmed maternal transfer of a large number of compounds (n = 68 out of 69) among 104 eggs collected from 21 nests across three nesting beaches within the Yucatán Peninsula, one of the world's most important rookeries for hawksbill turtles (Eretmochelys imbricata). High variation in PAH profiles was observed among beaches, using multivariate correspondence analysis and univariate Peto-Prentice tests, reflecting local acquisition during recent migration movements. Diagnostic PAH ratios reflected petrogenic origins in Celestún, the beach closest to petroleum industries in the Gulf of Mexico. By contrast, pollution profiles of OCPs and PCBs showed high similarity among beaches, reflecting the long-term accumulation of these pollutants at regional scales. Therefore, spatial planning of protected areas and the use of turtle eggs in biomonitoring needs to account for the spatial variation in pollution profiles among nesting beaches. Copyright © 2018 Elsevier Ltd. All rights reserved.

On the Relationship Between Hyperspectral Data and Foliar Nitrogen Content in Closed Canopy Forests

NASA Astrophysics Data System (ADS)

Knyazikhin, Y.; Schull, M.; Lepine, L. C.; Stenberg, P.; Mõttus, M.; Rautiainen, M.; Latorre, P.; Myneni, R.; Kaufmann, R.

2011-12-01

The importance of nitrogen for terrestrial ecosystem carbon dynamics and its climate feedback has been well recognized by the ecological community. Interaction between carbon and nitrogen at leaf level is among the fundamental mechanisms that directly control the dynamics of terrestrial vegetation carbon. This process influences absorption and scattering of solar radiation by foliage, which in turn impacts radiation reflected by the vegetation and measured by satellite sensors. NASA's Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) and ground based data on canopy structure and foliage nitrogen concentration acquired over six sites in Maine, New England, Florida, North Carolina and Washington were analyzed to assess the role of canopy structure, leaf optics and its biochemical constituents in the spectral variation of radiation reflected by the forest. The study sites represent closed canopy forests (LAI~5). Our results suggest: 1. Impact of canopy structure is so strong that it can significantly suppress the sensitivity of hyperspectral data to leaf optics. 2. Forest reflectance spectra in the interval [710, 790 nm] are required to obtain the fraction of the total leaf area that a "sensor sees" in a given direction. For closed canopy forests its retrieval does not require canopy reflectance models, suggesting that canopy reflectance spectra in this interval provide a direct estimate of the leaf area fraction. 3. The leaf area fraction fully explains variation in measured reflectance spectra due to variation in canopy structure. This variable is used to estimate the mean leaf scattering over foliage that the "sensor sees." For example the nadir-viewing AVIRIS sensor accumulates foliage optical properties over 25% of the total foliage area in needle leaf forest and about 50% in broadleaf forest. 4. Leaf surface properties have an impact on forest reflectivity, lowering its sensitivity to leaf absorbing pigments. 5. Variation in foliar nitrogen concentration can explain up to 55% of variation in AVIRIS spectra in the interval between 400 and 900 nm. The remaining factors could be due to (a) impact of leaf surface properties and/or (b) under-sampling of leaf optical properties due to the single view of the AVIRIS sensor. The theory of canopy spectral invariants underlies the separation of leaf scattering from the total canopy reflectance spectrum.

Experimental and rendering-based investigation of laser radar cross sections of small unmanned aerial vehicles

NASA Astrophysics Data System (ADS)

Laurenzis, Martin; Bacher, Emmanuel; Christnacher, Frank

2017-12-01

Laser imaging systems are prominent candidates for detection and tracking of small unmanned aerial vehicles (UAVs) in current and future security scenarios. Laser reflection characteristics for laser imaging (e.g., laser gated viewing) of small UAVs are investigated to determine their laser radar cross section (LRCS) by analyzing the intensity distribution of laser reflection in high resolution images. For the first time, LRCSs are determined in a combined experimental and computational approaches by high resolution laser gated viewing and three-dimensional rendering. An optimized simple surface model is calculated taking into account diffuse and specular reflectance properties based on the Oren-Nayar and the Cook-Torrance reflectance models, respectively.

Variation of Geochemical Signatures and Correlation of Biomarkers in Icelandic Mars Analogue Environments

NASA Astrophysics Data System (ADS)

Gentry, D.; Amador, E. S.; Cable, M. L.; Cantrell, T.; Chaudry, N.; Cullen, T.; Duca, Z. A.; Jacobsen, M. B.; McCaig, H. C.; Murukesan, G.; Rennie, V.; Schwieterman, E. W.; Stevens, A. H.; Tan, G.; Yin, C.; Stockton, A.; Cullen, D.; Geppert, W.

2015-12-01

Exploration missions to Mars rely on rovers to perform deep analyses over small sampling areas; however, landing site selection is done using large-scale but low-resolution remote sensing data. Using Earth analogue environments to estimate the small-scale spatial and temporal distributions of key geochemical signatures and (for habitability studies) biomarkers helps ensure that the chosen sampling strategies meet mission science goals. We conducted two rounds of analogue expeditions to recent Icelandic lava fields. In July 2013, we tested correlation between three common biomarker assays: cell quantification via fluorescence microscopy, ATP quantification via bioluminescence, and quantitative PCR with universal primer sets. Sample sites were nested at four spatial scales (1 m, 10 m, 100 m, and > 1 km) and homogeneous at 'remote imaging' resolution (overall temperature, apparent moisture content, and regolith grain size). All spatial scales were highly diverse in ATP, bacterial 16S, and archaeal 16S DNA content; nearly half of sites were statistically different in ATP content at α = 0.05. Cell counts showed significant variation at the 10 m and 100 m scale; at the > 1 km scale, the mean counts were not distinguishable, but the median counts were, indicating differences in underlying distribution. Fungal 18S DNA content similarly varied at 1 m, 10 m, and 100 m scales only. Cell counts were not correlated with ATP or DNA content at any scale. ATP concentration and DNA content for all three primer sets were positively correlated. Bacterial DNA content was positively correlated with archaeal and fungal DNA content, though archaeal correlation was weak. Fungal and archaeal correlation was borderline. In July 2015, we repeated the sampling strategy, with the addition of a smaller-scale sampling grid of 10 cm and a third > 1 km location. This expedition also measured reflectance of the tephra cover and preserved mineral samples for future Raman spectroscopy in order to better distinguish between effects of geochemical variation and intrinsic biomarker variation.

Assessing the Provenance of regolith components in the South Pole-Aitken Basin: Results from LRO, M3, GRAIL, and Ejecta Modeling

NASA Astrophysics Data System (ADS)

Petro, N. E.; Cohen, B. A.; Jolliff, B. L.; Moriarty, D. P.

2016-12-01

Results from recent lunar missions are reshaping our view of the lunar surface, the evolution of the Moon, and the scale of processes that have affected the Moon. From orbital remote sensing data we can investigate surface mineralogy at the 100s m scale as well as corresponding high-resolution images to evaluate the exposures of various compositions. Coupled with geophysical data from the GRAIL mission, we can now assess the effects of large impacts (>200 km in diameter). These data are essential for assessing the composition of the interior of the South Pole-Aitken Basin (SPA), a key destination for future sample return (Jolliff et al., this conference). Data from the Lunar Reconnaissance Orbiter (LRO) shows that variations in surface roughness and morphology are broad and likely reflect both the ancient age of the basin floor, as well as younger volcanic and impact-related resurfacing events. Data from the Moon Mineralogy Mapper also reveal compositional variations across the interior of the basin and reflect both ancient volcanic activity as well as surface exposures of deep-seated crustal (SPA substrate) materials. These datasets are critical for delineating variations in surface compositions, which indicate formation mechanisms (e.g., volcanic vs. impact-derived). We investigate the resurfacing history of SPA, focusing on integrating data from multiple instruments, as well as updated modeling into the origin of regolith components (in the form of ejecta from near and distant impact craters). Recent advances include determination of the inventory of large craters as well as improved estimates of the amount of ejecta from such craters. As with past estimates of basin ejecta distribution, the volume of ejecta introduced to SPA is relatively small and quickly becomes diluted within the regolith. In addition, the contribution of ejecta by smaller, local craters is shown to distribute a comparable amount of material within the basin. Much of the material distributed by these local craters is SPA substrate, with a small amount of re-melted material. In most locations within SPA, the amount of reworked SPA substrate by ballistic ejecta emplacement and mixing from impacts within the presumed transient cavity greatly exceeds the amount of material contributed by ballistic sedimentation from large craters outside of SPA.

Remote compositional analysis of lunar olivine-rich lithologies with Moon Mineralogy Mapper (M3) spectra

USGS Publications Warehouse

Isaacson, P.J.; Pieters, C.M.; Besse, S.; Clark, R.N.; Head, J.W.; Klima, R.L.; Mustard, J.F.; Petro, N.E.; Staid, M.I.; Sunshine, J.M.; Taylor, L.A.; Thaisen, K.G.; Tompkins, S.

2011-01-01

A systematic approach for deconvolving remotely sensed lunar olivine-rich visible to near-infrared (VNIR) reflectance spectra with the Modified Gaussian Model (MGM) is evaluated with Chandrayaan-1 Moon Mineralogy Mapper (M 3) spectra. Whereas earlier studies of laboratory reflectance spectra focused only on complications due to chromite inclusions in lunar olivines, we develop a systematic approach for addressing (through continuum removal) the prominent continuum slopes common to remotely sensed reflectance spectra of planetary surfaces. We have validated our continuum removal on a suite of laboratory reflectance spectra. Suites of olivine-dominated reflectance spectra from a small crater near Mare Moscoviense, the Copernicus central peak, Aristarchus, and the crater Marius in the Marius Hills were analyzed. Spectral diversity was detected in visual evaluation of the spectra and was quantified using the MGM. The MGM-derived band positions are used to estimate the olivine's composition in a relative sense. Spectra of olivines from Moscoviense exhibit diversity in their absorption features, and this diversity suggests some variation in olivine Fe/Mg content. Olivines from Copernicus are observed to be spectrally homogeneous and thus are predicted to be more compositionally homogeneous than those at Moscoviense but are of broadly similar composition to the Moscoviense olivines. Olivines from Aristarchus and Marius exhibit clear spectral differences from those at Moscoviense and Copernicus but also exhibit features that suggest contributions from other phases. If the various precautions discussed here are weighed carefully, the methods presented here can be used to make general predictions of absolute olivine composition (Fe/Mg content). Copyright ?? 2011 by the American Geophysical Union.

An overview of surface radiance and biology studies in FIFE

NASA Astrophysics Data System (ADS)

Blad, B. L.; Schimel, D. S.

1992-11-01

The use of satellite data to study and to understand energy and mass exchanges between the land surface and the atmosphere requires information about various biological processes and how various reflected or emitted spectral radiances are influenced by or manifested in these processes. To obtain such information, studies were conducted by the First ISLSCP Field Experiment (FIFE) surface radiances and biology (SRB) group using surface, near-surface, helicopter, and aircraft measurements. The two primary objectives of this group were to relate radiative fluxes to biophysical parameters and physiological processes and to assess how various management treatments affect important biological processes. This overview paper summarizes the results obtained by various SRB teams working in nine different areas: (1) measurement of bidirectional reflectance and estimation of hemispherical albedo; (2) evaluation of spatial and seasonal variability of spectral reflectance and vegetation indices; (3) determination of surface and radiational factors and their effects on vegetation indices and PAR relationships; (4) use of surface temperatures to estimate sensible heat flux; (5) controls over photosynthesis and respiration at small scales; (6) soil surface CO2 fluxes and grassland carbon budget; (7) landscape variations in controls over gas exchange and energy partitioning; (8) radiometric response of prairie to management and topography; and (9) determination of nitrogen gas exchanges in a tallgrass prairie.

Material culture across the Aleutian archipelago.

PubMed

Hatfield, Virginia L

2010-12-01

The material evidence from sites across the Aleutian Islands reflects colonization events, subsequent adaptations, and influxes of ideas and/or people from the east. The occurrence in the eastern Aleutians of bifacial technology around 7000 BP, of artifacts similar to the Arctic Small Tool tradition between 4000 and 3500 BP, and of slate and jet objects around 1000 BP reflects repeated surges of influence or movement of peoples from further east into the eastern end of the chain. In the central and western Aleutians, influence or perhaps colonization from east of the Aleutians is also marked by the occurrence of bifacial technology about 6500 BP and the appearance of slate artifacts after 1000 BP, suggesting the movement of ideas or people from further east. Basic trends across the archipelago include a decrease in formal chipped-stone tools, an increase in the use and the complexity of bone technology, and the increase in use and variety of ground-stone tools. In addition, increasing village site sizes and denser midden deposits are seen later in time throughout the archipelago. The similarity in sites and assemblages, albeit with regional variations, reflects trends that are seen across the chain and indicates that these island communities were not isolated from one another or from mainland Alaska.

Strongly Iridescent Hybrid Photonic Sensors Based on Self-Assembled Nanoparticles for Hazardous Solvent Detection.

PubMed

Sato, Ayaka; Ikeda, Yuya; Yamaguchi, Koichi; Vohra, Varun

2018-03-16

Facile detection and the identification of hazardous organic solvents are essential for ensuring global safety and avoiding harm to the environment caused by industrial wastes. Here, we present a simple method for the fabrication of silver-coated monodisperse polystyrene nanoparticle photonic structures that are embedded into a polydimethylsiloxane (PDMS) matrix. These hybrid materials exhibit a strong green iridescence with a reflectance peak at 550 nm that originates from the close-packed arrangement of the nanoparticles. This reflectance peak measured under Wulff-Bragg conditions displays a 20 to 50 nm red shift when the photonic sensors are exposed to five commonly employed and highly hazardous organic solvents. These red-shifts correlate well with PDMS swelling ratios using the various solvents, which suggests that the observable color variations result from an increase in the photonic crystal lattice parameter with a similar mechanism to the color modulation of the chameleon skin. Dynamic reflectance measurements enable the possibility of clearly identifying each of the tested solvents. Furthermore, as small amounts of hazardous solvents such as tetrahydrofuran can be detected even when mixed with water, the nanostructured solvent sensors we introduce here could have a major impact on global safety measures as innovative photonic technology for easily visualizing and identifying the presence of contaminants in water.

Phase-Shifted Laser Feedback Interferometry

NASA Technical Reports Server (NTRS)

Ovryn, Benjie

1999-01-01

Phase-shifted, laser feedback interferometry is a new diagnostic tool developed at the NASA Lewis Research Center under the Advanced Technology Development (ATD) Program directed by NASA Headquarters Microgravity Research Division. It combines the principles of phase-shifting interferometry (PSI) and laser-feedback interferometry (LFI) to produce an instrument that can quantify both optical path length changes and sample reflectivity variations. In a homogenous medium, the optical path length between two points is the product of the index of refraction and the geometric distance between the two points. LFI differs from other forms of interferometry by using the laser as both the source and the phase detector. In LFI, coherent feedback of the incident light either reflected directly from a surface or reflected after transmission through a region of interest will modulate the output intensity of the laser. The combination of PSI and LFI has produced a robust instrument, based on a low-power helium-neon (HeNe) gas laser, with a high dynamic range that can be used to measure either static or oscillatory changes of the optical path length. Small changes in optical path length are limited by the fraction of a fringe that can be measured; we can measure nonoscillatory changes with a root mean square (rms) error of the wavelength/1000 without averaging.

Exact Rayleigh scattering calculations for use with the Nimbus-7 Coastal Zone Color Scanner

NASA Technical Reports Server (NTRS)

Gordon, Howard R.; Brown, James W.; Evans, Robert H.

1988-01-01

The radiance reflected from a plane-parallel atmosphere and flat sea surface in the absence of aerosols has been determined with an exact multiple scattering code to improve the analysis of Nimbus-7 CZCS imagery. It is shown that the single scattering approximation normally used to compute this radiance can result in errors of up to 5 percent for small and moderate solar zenith angles. A scheme to include the effect of variations in the surface pressure in the exact computation of the Rayleigh radiance is discussed. The results of an application of these computations to CZCS imagery suggest that accurate atmospheric corrections can be obtained for solar zenith angles at least as large as 65 deg.

The Portland Basin: A (big) river runs through it

USGS Publications Warehouse

Evarts, Russell C.; O'Connor, Jim E.; Wells, Ray E.; Madin, Ian P.

2009-01-01

Metropolitan Portland, Oregon, USA, lies within a small Neogene to Holocene basin in the forearc of the Cascadia subduction system. Although the basin owes its existence and structural development to its convergent-margin tectonic setting, the stratigraphic architecture of basin-fill deposits chiefly reflects its physiographic position along the lower reaches of the continental-scale Columbia River system. As a result of this globally unique setting, the basin preserves a complex record of aggradation and incision in response to distant as well as local tectonic, volcanic, and climatic events. Voluminous flood basalts, continental and locally derived sediment and volcanic debris, and catastrophic flood deposits all accumulated in an area influenced by contemporaneous tectonic deformation and variations in regional and local base level.

Effect of gamma radiation on low density polyethylene (LDPE) films: optical, dielectric and FTIR studies.

PubMed

Moez, A Abdel; Aly, S S; Elshaer, Y H

2012-07-01

The low density polyethylene (LDPE) films were irradiated with gamma radiation in the dose range varied from 20 to 400 kGy. The induced changes in the chemical structure and dielectric properties for the irradiated films were investigated. The structure modifications: crystallinity as well as possible molecular changes of the polymer were recognized using Fourier Transform Infrared Spectroscopy (FTIR). The optical results were determined from transmission, reflection and absorption spectra for these films. The dielectric properties of these films were calculated using optical methods. Result indicates small variation in crystallinity which could be increased or decreased depending on the relative importance of the structural and chemical changes. Copyright © 2012 Elsevier B.V. All rights reserved.

Eye coding mechanisms in early human face event-related potentials.

PubMed

Rousselet, Guillaume A; Ince, Robin A A; van Rijsbergen, Nicola J; Schyns, Philippe G

2014-11-10

In humans, the N170 event-related potential (ERP) is an integrated measure of cortical activity that varies in amplitude and latency across trials. Researchers often conjecture that N170 variations reflect cortical mechanisms of stimulus coding for recognition. Here, to settle the conjecture and understand cortical information processing mechanisms, we unraveled the coding function of N170 latency and amplitude variations in possibly the simplest socially important natural visual task: face detection. On each experimental trial, 16 observers saw face and noise pictures sparsely sampled with small Gaussian apertures. Reverse-correlation methods coupled with information theory revealed that the presence of the eye specifically covaries with behavioral and neural measurements: the left eye strongly modulates reaction times and lateral electrodes represent mainly the presence of the contralateral eye during the rising part of the N170, with maximum sensitivity before the N170 peak. Furthermore, single-trial N170 latencies code more about the presence of the contralateral eye than N170 amplitudes and early latencies are associated with faster reaction times. The absence of these effects in control images that did not contain a face refutes alternative accounts based on retinal biases or allocation of attention to the eye location on the face. We conclude that the rising part of the N170, roughly 120-170 ms post-stimulus, is a critical time-window in human face processing mechanisms, reflecting predominantly, in a face detection task, the encoding of a single feature: the contralateral eye. © 2014 ARVO.

Optical device for sensing the index of refraction of liquids with high turbidity

NASA Astrophysics Data System (ADS)

Pena-Gomar, M.; Fajardo-Lira, C.; Rosete-Aguilar, Martha; Garcia-Valenzuela, Augusto

2000-12-01

We discuss the use of photo-reflectance near the critical angle (PRCA) to monitor small changes of the RI of highly turbid liquids. The theory of the reflectance of a laser beam near the critical angle for an external medium with a complex RI is summarized. The applicability of PRCA to sense highly turbid media is demonstrated experimentally on bovine milk samples. We give experimental results showing the temporal variation of the refractive index (RI) during three different processes in bovine milk: (1) Mechanical stirring, (2) temperature changes, and (3) pH variations around the isoelectric point of the casein micelles (micelle aggregation). RI changes in the order of a few times 1 X 10-3 are observed during the experiments. The experimental results show that the RI of milk can be used to track physico-chemical changes in time allowing one to measure the time constant of the different process. The design of a compact RI probe for in situ applications is discussed. The miniaturization of such a probe will probably limited by factors other than the loss of sensitivity. A novel angle-of-incidence control which requires only linear displacements of some of the optical components (no rotation) is proposed and shown to be feasible. Such an optical probe may be used in the dairy industry and in general in the food industry or food science research laboratories. It could give additional analytical power to the food scientist, engineer, or technician.

Computing the Polarimetric and Photometric Variability of Be Stars

NASA Astrophysics Data System (ADS)

Marr, K. C.; Jones, C. E.; Halonen, R. J.

2018-01-01

We investigate variations in the linear polarization as well as in the V-band and B-band color–magnitudes for classical Be star disks. We present two models: disks with enhanced disk density and disks that are tilted or warped from the stellar equatorial plane. In both cases, we predict variation in observable properties of the system as the disk rotates. We use a non-LTE radiative transfer code BEDISK (Sigut & Jones) in combination with a Monte Carlo routine that includes multiple scattering (Halonen et al.) to model classical Be star systems. We find that a disk with an enhanced density region that is one order of magnitude denser than the disk’s base density shows as much as ∼ 0.2 % variability in the polarization while the polarization position angle varies by ∼ 8^\\circ . The ΔV magnitude for the same system shows variations of up to ∼ 0.4 mag while the Δ(B–V) color varies by at most ∼ 0.01 mag. We find that disks tilted from the equatorial plane at small angles of ∼ 30^\\circ more strongly reflect the values of polarization and color–magnitudes reported in the literature than disks tilted at larger angles. For this model, the linear polarization varies by ∼ 0.3 % , the polarization position angle varies by ∼ 60^\\circ , the ΔV magnitude varies up to 0.35 mag, and the Δ(B–V) color varies by up to 0.1 mag. We find that the enhanced disk density models show ranges of polarization and color–magnitudes that are commensurate with what is reported in the literature for all sizes of the density-enhanced regions. From this, we cannot determine any preference for small or large density-enhanced regions.

Variation in Definitive Therapy for Localized Non-Small Cell Lung Cancer Among National Comprehensive Cancer Network Institutions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Valle, Luca F.; Jagsi, Reshma; Bobiak, Sarah N.

Purpose: This study determined practice patterns in the staging and treatment of patients with stage I non-small cell lung cancer (NSCLC) among National Comprehensive Cancer Network (NCCN) member institutions. Secondary aims were to determine trends in the use of definitive therapy, predictors of treatment type, and acute adverse events associated with primary modalities of treatment. Methods and Materials: Data from the National Comprehensive Cancer Network Oncology Outcomes Database from 2007 to 2011 for US patients with stage I NSCLC were used. Main outcome measures included patterns of care, predictors of treatment, acute morbidity, and acute mortality. Results: Seventy-nine percent ofmore » patients received surgery, 16% received definitive radiation therapy (RT), and 3% were not treated. Seventy-four percent of the RT patients received stereotactic body RT (SBRT), and the remainder received nonstereotactic RT (NSRT). Among participating NCCN member institutions, the number of surgeries-to-RT course ratios varied between 1.6 and 34.7 (P<.01), and the SBRT-to-NSRT ratio varied between 0 and 13 (P=.01). Significant variations were also observed in staging practices, with brain imaging 0.33 (0.25-0.43) times as likely and mediastinoscopy 31.26 (21.84-44.76) times more likely for surgical patients than for RT patients. Toxicity rates for surgical and for SBRT patients were similar, although the rates were double for NSRT patients. Conclusions: The variations in treatment observed among NCCN institutions reflects the lack of level I evidence directing the use of surgery or SBRT for stage I NSCLC. In this setting, research of patient and physician preferences may help to guide future decision making.« less

Lake carbonate-δ18 records from the Yukon Territory, Canada: Little Ice Age moisture variability and patterns

USGS Publications Warehouse

Anderson, Lesleigh; Finney, Bruce P.; Shapley, Mark D.

2011-01-01

A 1000-yr history of climate change in the central Yukon Territory, Canada, is inferred from sediment composition and isotope geochemistry from small, groundwater fed, Seven Mile Lake. Recent observations of lake-water δ18O, lake level, river discharge, and climate variations, suggest that changes in regional effective moisture (precipitation minus evaporation) are reflected by the lake’s hydrologic balance. The observations indicate that the lake is currently 18O-enriched by summer evaporation and that during years of increased precipitation, when groundwater inflow rates to the lake increase, lake-water δ18O values decrease. Past lake-water δ18O values are inferred from oxygen isotope ratios of fine-grained sedimentary endogenic carbonate. Variations in carbonate δ18O, supplemented by those in carbonate and organic δ13C, C/N ratios, and organic carbon, carbonate and biogenic silica accumulation rates, document changes in effective moisture at decadal time scales during the early Little Ice Age period to present. Results indicate that between ∼AD 1000 and 1600, effective moisture was higher than today. A shift to more arid climate conditions occurred after ∼AD 1650. The 19th and 20th centuries have been the driest of the past millennium. Temporal variations correspond with inferred shifts in summer evaporation from Marcella Lake δ18O, a similarly small, stratified, alkaline lake located ∼250 km to the southwest, suggesting that the combined reconstructions accurately document the regional paleoclimate of the east-central interior. Comparison with regional glacial activity suggests differing regional moisture patterns during early and late Little Ice Age advances.

Adaptive divergence despite strong genetic drift: genomic analysis of the evolutionary mechanisms causing genetic differentiation in the island fox (Urocyon littoralis).

PubMed

Funk, W Chris; Lovich, Robert E; Hohenlohe, Paul A; Hofman, Courtney A; Morrison, Scott A; Sillett, T Scott; Ghalambor, Cameron K; Maldonado, Jesus E; Rick, Torben C; Day, Mitch D; Polato, Nicholas R; Fitzpatrick, Sarah W; Coonan, Timothy J; Crooks, Kevin R; Dillon, Adam; Garcelon, David K; King, Julie L; Boser, Christina L; Gould, Nicholas; Andelt, William F

2016-05-01

The evolutionary mechanisms generating the tremendous biodiversity of islands have long fascinated evolutionary biologists. Genetic drift and divergent selection are predicted to be strong on islands and both could drive population divergence and speciation. Alternatively, strong genetic drift may preclude adaptation. We conducted a genomic analysis to test the roles of genetic drift and divergent selection in causing genetic differentiation among populations of the island fox (Urocyon littoralis). This species consists of six subspecies, each of which occupies a different California Channel Island. Analysis of 5293 SNP loci generated using Restriction-site Associated DNA (RAD) sequencing found support for genetic drift as the dominant evolutionary mechanism driving population divergence among island fox populations. In particular, populations had exceptionally low genetic variation, small Ne (range = 2.1-89.7; median = 19.4), and significant genetic signatures of bottlenecks. Moreover, islands with the lowest genetic variation (and, by inference, the strongest historical genetic drift) were most genetically differentiated from mainland grey foxes, and vice versa, indicating genetic drift drives genome-wide divergence. Nonetheless, outlier tests identified 3.6-6.6% of loci as high FST outliers, suggesting that despite strong genetic drift, divergent selection contributes to population divergence. Patterns of similarity among populations based on high FST outliers mirrored patterns based on morphology, providing additional evidence that outliers reflect adaptive divergence. Extremely low genetic variation and small Ne in some island fox populations, particularly on San Nicolas Island, suggest that they may be vulnerable to fixation of deleterious alleles, decreased fitness and reduced adaptive potential. © 2016 John Wiley & Sons Ltd.

Lake carbonate-δ 18O records from the Yukon Territory, Canada: Little Ice Age moisture variability and patterns

NASA Astrophysics Data System (ADS)

Anderson, Lesleigh; Finney, Bruce P.; Shapley, Mark D.

2011-04-01

A 1000-yr history of climate change in the central Yukon Territory, Canada, is inferred from sediment composition and isotope geochemistry from small, groundwater fed, Seven Mile Lake. Recent observations of lake-water δ 18O, lake level, river discharge, and climate variations, suggest that changes in regional effective moisture (precipitation minus evaporation) are reflected by the lake's hydrologic balance. The observations indicate that the lake is currently 18O-enriched by summer evaporation and that during years of increased precipitation, when groundwater inflow rates to the lake increase, lake-water δ 18O values decrease. Past lake-water δ 18O values are inferred from oxygen isotope ratios of fine-grained sedimentary endogenic carbonate. Variations in carbonate δ 18O, supplemented by those in carbonate and organic δ 13C, C/N ratios, and organic carbon, carbonate and biogenic silica accumulation rates, document changes in effective moisture at decadal time scales during the early Little Ice Age period to present. Results indicate that between ˜AD 1000 and 1600, effective moisture was higher than today. A shift to more arid climate conditions occurred after ˜AD 1650. The 19th and 20th centuries have been the driest of the past millennium. Temporal variations correspond with inferred shifts in summer evaporation from Marcella Lake δ 18O, a similarly small, stratified, alkaline lake located ˜250 km to the southwest, suggesting that the combined reconstructions accurately document the regional paleoclimate of the east-central interior. Comparison with regional glacial activity suggests differing regional moisture patterns during early and late Little Ice Age advances.

An empirical determination of the minimum number of measurements needed to estimate the mean random vitrinite reflectance of disseminated organic matter

USGS Publications Warehouse

Barker, C.E.; Pawlewicz, M.J.

1993-01-01

In coal samples, published recommendations based on statistical methods suggest 100 measurements are needed to estimate the mean random vitrinite reflectance (Rv-r) to within ??2%. Our survey of published thermal maturation studies indicates that those using dispersed organic matter (DOM) mostly have an objective of acquiring 50 reflectance measurements. This smaller objective size in DOM versus that for coal samples poses a statistical contradiction because the standard deviations of DOM reflectance distributions are typically larger indicating a greater sample size is needed to accurately estimate Rv-r in DOM. However, in studies of thermal maturation using DOM, even 50 measurements can be an unrealistic requirement given the small amount of vitrinite often found in such samples. Furthermore, there is generally a reduced need for assuring precision like that needed for coal applications. Therefore, a key question in thermal maturation studies using DOM is how many measurements of Rv-r are needed to adequately estimate the mean. Our empirical approach to this problem is to compute the reflectance distribution statistics: mean, standard deviation, skewness, and kurtosis in increments of 10 measurements. This study compares these intermediate computations of Rv-r statistics with a final one computed using all measurements for that sample. Vitrinite reflectance was measured on mudstone and sandstone samples taken from borehole M-25 in the Cerro Prieto, Mexico geothermal system which was selected because the rocks have a wide range of thermal maturation and a comparable humic DOM with depth. The results of this study suggest that after only 20-30 measurements the mean Rv-r is generally known to within 5% and always to within 12% of the mean Rv-r calculated using all of the measured particles. Thus, even in the worst case, the precision after measuring only 20-30 particles is in good agreement with the general precision of one decimal place recommended for mean Rv-r measurements on DOM. The coefficient of variation (V = standard deviation/mean) is proposed as a statistic to indicate the reliability of the mean Rv-r estimates made at n ??? 20. This preliminary study suggests a V 0.2 suggests an unreliable mean in such small samples. ?? 1993.

Analyzing asteroid reflectance spectra with numerical tools based on scattering simulations

NASA Astrophysics Data System (ADS)

Penttilä, Antti; Väisänen, Timo; Markkanen, Johannes; Martikainen, Julia; Gritsevich, Maria; Muinonen, Karri

2017-04-01

We are developing a set of numerical tools that can be used in analyzing the reflectance spectra of granular materials such as the regolith surface of atmosphereless Solar system objects. Our goal is to be able to explain, with realistic numerical scattering models, the spectral features arising when materials are intimately mixed together. We include the space-weathering -type effects in our simulations, i.e., mixing host mineral locally with small inclusions of another material in small proportions. Our motivation for this study comes from the present lack of such tools. The current common practice is to apply a semi-physical approximate model such as some variation of Hapke models [e.g., 1] or the Shkuratov model [2]. These models are expressed in a closed form so that they are relatively fast to apply. They are based on simplifications on the radiative transfer theory. The problem is that the validity of the model is not always guaranteed, and the derived physical properties related to particle scattering properties can be unrealistic [3]. We base our numerical tool into a chain of scattering simulations. Scattering properties of small inclusions inside an absorbing host matrix can be derived using exact methods solving the Maxwell equations of the system. The next step, scattering by a single regolith grain, is solved using a geometrical optics method accounting for surface reflections, internal absorption, and possibly the internal diffuse scattering. The third step involves the radiative transfer simulations of these regolith grains in a macroscopic planar element. The chain can be continued next with shadowing simulation over the target surface elements, and finally by integrating the bidirectional reflectance distribution function over the object's shape. Most of the tools in the proposed chain already exist, and one practical task for us is to tie these together into an easy-to-use toolchain that can be publicly distributed. We plan to open the abovementioned toolchain as a web-based open service. Acknowledgments: The research is funded by the ERC Advanced Grant No. 320773 (SAEMPL) References: [1] B. Hapke, Icarus 195, 918-926, 2008. [2] Yu. Shkuratov et al, Icarus 137, 235-246, 1999. [3] Yu. Shkuratov et al, JQSRT 113, 2431-2456, 2012. [4] K. Muinonen et al, JQSRT 110, 1628-1639, 2009.

Teachers As Researchers: Improving Practice in Rural and Small Schools. Rural, Small Schools Network Information Exchange: Number 11, Fall 1991.

ERIC Educational Resources Information Center

Regional Laboratory for Educational Improvement of the Northeast & Islands, Andover, MA.

This packet includes reprints of journal articles and other information exploring reflective practice and action research among rural educators. The four sections of the packet cover concepts of reflective practice and action research; examples of reflective practice at both the elementary and secondary levels; issues such as encouraging…

Small scale monitoring of a bioremediation barrier using miniature electrical resistivity tomography

NASA Astrophysics Data System (ADS)

Sentenac, Philippe; Hogson, Tom; Keenan, Helen; Kulessa, Bernd

2015-04-01

The aim of this study was to assess, in the laboratory, the efficiency of a barrier of oxygen release compound (ORC) to block and divert a diesel plume migration in a scaled aquifer model using miniature electrical resistivity tomography (ERT) as the monitoring system. Two plumes of contaminant (diesel) were injected in a soil model made of local sand and clay. The diesel plumes migration was imaged and monitored using a miniature resistivity array system that has proved to be accurate in soil resistivity variations in small-scaled models of soil. ERT results reflected the lateral spreading and diversion of the diesel plumes in the unsaturated zone. One of the contaminant plumes was partially blocked by the ORC barrier and a diversion and reorganisation of the diesel in the soil matrix was observed. The technique of time-lapse ERT imaging showed that a dense non-aqueous phase liquid (DNAPL) contaminant like diesel can be monitored through a bioremediation barrier and the technique is well suited to monitor the efficiency of the barrier. Therefore, miniature ERT as a small-scale modelling tool could complement conventional techniques, which require more expensive and intrusive site investigation prior to remediation.

Dynamic Time Multiplexing Fabrication of Holographic Polymer Dispersed Liquid Crystals for Increased Wavelength Sensitivity

NASA Technical Reports Server (NTRS)

Fontecchio, Adam K. (Inventor); Rai, Kashma (Inventor)

2017-01-01

Described herein is a new holographic polymer dispersed liquid crystal (HPDLC) medium with broadband reflective properties, and a new technique for fabrication of broadband HPDLC mediums. The new technique involves dynamic variation of the holography setup during HPDLC formation, enabling the broadening of the HPDLC medium's wavelength response. Dynamic variation of the holography setup may include the rotation and/or translation of one or more motorized stages, allowing for time and spatial, or angular, multiplexing through variation of the incident angles of one or more laser beams on a pre-polymer mixture during manufacture. An HPDLC medium manufactured using these techniques exhibits improved optical response by reflecting a broadband spectrum of wavelengths. A new broadband holographic polymer dispersed liquid crystal thin film polymeric mirror stack with electrically-switchable beam steering capability is disclosed. XXXX Described herein is a new holographic polymer dispersed liquid crystal (HPDLC) medium with broadband reflective properties, and a new technique for fabrication of broadband 10 HPDLC mediums. The new technique involves dynamic variation of the holography setup during HPDLC formation, enabling the broadening of the HPDLC medium's wavelength response. Dynamic variation of the holography setup may include the rotation and/or translation of one or more 15 motorized stages, allowing for time and spatial, or angular, multiplexing through variation of the incident angles of one or more laser beams on a pre-polymer mixture during manufacture. An HPDLC medium manufactured using these techniques exhibits improved optical response by reflecting 20 a broadband spectrum of wavelengths. A new broadband holographic polymer dispersed liquid crystal thin film polymeric mirror stack with electrically switchable beam steering capability is disclosed.

A comprehensive analysis of surface acoustic wave reflections

NASA Astrophysics Data System (ADS)

Robinson, H.; Hahn, Y.; Gau, J. N.

1989-06-01

A thorough study of the perturbative and variational approaches is carried out for the surface acoustic wave reflection problem. We have shown that the perturbation treatment by Datta and Hunsinger and potentially powerful variational formulation by Chen and Haus [IEEE Trans. Sonics Ultrason. SU-32, 395 (1985)] are mutually consistent. In their common region of validity, these two approaches yield nearly identical results for the reflection coefficients and velocity shifts due to metal finger and groove overlays. Term-by-term comparison of the mass- and stress-loading effects, and also the electric shorting effect, is carried out to provide a coherent picture of the reflection phenomena. The on- and off-resonance behavior of the reflection coefficient can be described correctly using either one of these theories, with proper inclusion of the overlay shape dependence. A new term for electric shorting is derived for groove overlays.

Using multilevel spatial models to understand salamander site occupancy patterns after wildfire

USGS Publications Warehouse

Chelgren, Nathan; Adams, Michael J.; Bailey, Larissa L.; Bury, R. Bruce

2011-01-01

Studies of the distribution of elusive forest wildlife have suffered from the confounding of true presence with the uncertainty of detection. Occupancy modeling, which incorporates probabilities of species detection conditional on presence, is an emerging approach for reducing observation bias. However, the current likelihood modeling framework is restrictive for handling unexplained sources of variation in the response that may occur when there are dependence structures such as smaller sampling units that are nested within larger sampling units. We used multilevel Bayesian occupancy modeling to handle dependence structures and to partition sources of variation in occupancy of sites by terrestrial salamanders (family Plethodontidae) within and surrounding an earlier wildfire in western Oregon, USA. Comparison of model fit favored a spatial N-mixture model that accounted for variation in salamander abundance over models that were based on binary detection/non-detection data. Though catch per unit effort was higher in burned areas than unburned, there was strong support that this pattern was due to a higher probability of capture for individuals in burned plots. Within the burn, the odds of capturing an individual given it was present were 2.06 times the odds outside the burn, reflecting reduced complexity of ground cover in the burn. There was weak support that true occupancy was lower within the burned area. While the odds of occupancy in the burn were 0.49 times the odds outside the burn among the five species, the magnitude of variation attributed to the burn was small in comparison to variation attributed to other landscape variables and to unexplained, spatially autocorrelated random variation. While ordinary occupancy models may separate the biological pattern of interest from variation in detection probability when all sources of variation are known, the addition of random effects structures for unexplained sources of variation in occupancy and detection probability may often more appropriately represent levels of uncertainty. ?? 2011 by the Ecological Society of America.

Curcumin as a positive resist dye optimized for g- and h-line exposure

DOE Office of Scientific and Technical Information (OSTI.GOV)

Renschler, C.L.; Stiefeld, R.E.; Rodriguez, J.L.

1987-06-01

It has now been firmly established, both theoretically and experimentally, that the addition of a non-bleachable absorber (or dye) to photoresist can reduce notching and other linewidth control variations associated with the patterning of reflective surfaces. Such variations are due to two separate, but closely related, effects. The first of these effects is reflection of light off scattering centers on the substrate at angles other than surface-normal.

The Landsat Image Mosaic of Antarctica

USGS Publications Warehouse

Bindschadler, Robert; Vornberger, P.; Fleming, A.; Fox, A.; Mullins, J.; Binnie, D.; Paulsen, S.J.; Granneman, Brian J.; Gorodetzky, D.

2008-01-01

The Landsat Image Mosaic of Antarctica (LIMA) is the first true-color, high-spatial-resolution image of the seventh continent. It is constructed from nearly 1100 individually selected Landsat-7 ETM+ scenes. Each image was orthorectified and adjusted for geometric, sensor and illumination variations to a standardized, almost seamless surface reflectance product. Mosaicing to avoid clouds produced a high quality, nearly cloud-free benchmark data set of Antarctica for the International Polar Year from images collected primarily during 1999-2003. Multiple color composites and enhancements were generated to illustrate additional characteristics of the multispectral data including: the true appearance of the surface; discrimination between snow and bare ice; reflectance variations within bright snow; recovered reflectance values in regions of sensor saturation; and subtle topographic variations associated with ice flow. LIMA is viewable and individual scenes or user defined portions of the mosaic are downloadable at http://lima.usgs.gov. Educational materials associated with LIMA are available at http://lima.nasa.gov.

NON-INVASIVE DETERMINATION OF THE LOCATION AND DISTRBUTION OF FREE-PHASE DENSE NONAQUEOUS PHASE LIQUIDS (DNAPL) BY SEISMIC REFLECTION TECHNIQUES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Michael G. Waddell; William J. Domoracki; Jerome Eyer

2003-01-01

The Earth Sciences and Resources Institute, University of South Carolina is conducting a proof of concept study to determine the location and distribution of subsurface DNAPL carbon tetrachloride (CCl{sub 4}) contamination at the 216-Z-9 crib, 200 West area, DOE Hanford Site, Washington by use of two-dimensional high-resolution seismic reflection surveys and borehole geophysical data. The study makes use of recent advances in seismic reflection amplitude versus offset (AVO) technology to directly detect the presence of subsurface DNAPL. The techniques proposed are noninvasive means of site characterization and direct free-phase DNAPL detection. This final report covers the results of Tasks 1,more » 2, and 3. Task (1) contains site evaluation and seismic modeling studies. The site evaluation consists of identifying and collecting preexisting geological and geophysical information regarding subsurface structure and the presence and quantity of DNAPL. The seismic modeling studies were undertaken to determine the likelihood that an AVO response exists and its probable manifestation. Task (2) is the design and acquisition of 2-D seismic reflection data to image areas of probable high concentration of DNAPL. Task (3) is the processing and interpretation of the 2-D data. During the commission of these tasks four seismic reflection profiles were collected. Subsurface velocity information was obtained by vertical seismic profile surveys in three wells. The interpretation of these data is in two parts. Part one is the construction and interpretation of structural contour maps of the contact between the Hanford Fine unit and the underlying Plio/Pleistocene unit and of the contact between the Plio/Pleistocene unit and the underlying caliche layer. These two contacts were determined to be the most likely surfaces to contain the highest concentration CCl{sub 4}. Part two of the interpretation uses the results of the AVO modeling to locate any seismic amplitude anomalies that might be associated with the presence of high concentrations of CCl{sub 4}. Based on the modeling results three different methods of AVO analysis were preformed on the seismic data: enhanced amplitude stacks, offset range limited stacks, and gradient stacks. Seismic models indicate that the reflection from the contact between the Hanford Fine and the Plio/Pleistocene should exhibit amplitude variations where there are high concentrations of CCl{sub 4}. A series of different scenarios were modeled. The first scenario is the Hanford Fine pores are 100% saturated with CCl{sub 4} and the underlying Plio/Pleistocene pores are saturated with air. In this scenario the reflection coefficients are slightly negative at the small angles of incidence and become increasing more negative at the larger angles of incidence (dim-out). The second scenario is the Hanford Fine pores are saturated with air and Plio/Pleistocene pores are saturated with CCl{sub 4}. In this scenario the reflection coefficients are slightly positive at the small angles of incidence and become negative at the large angles of incidence (polarity reversal). Finally the third scenario is both the Hanford Fine and the Plio/Pleistocene pores are saturated CCl{sub 4}. In this scenario the reflection coefficients at the small angles of incidence are slightly positive, but much less than background response, and with increasing angle of incidence the reflection coefficients become slightly more positive. On the field data areas where extraction wells have high concentrations of CCl{sub 4} a corresponding dim-out and/or a polarity reversal is noted.« less

Soybean canopy reflectance as a function of view and illumination geometry

NASA Technical Reports Server (NTRS)

Bauer, M. E. (Principal Investigator); Ranson, K. J.; Vanderbilt, V. C.; Biehl, L. L.; Robinson, B. F.

1982-01-01

The results of an experiment designed to characterize a soybean field by its reflectance at various view and illumination angles and by its physical and agronomic attributes are presented. Reflectances were calculated from measurements at four wavelength bands through eight view azimuth and seven view zenith directions for various solar zenith and azimuth angles during portions of three days. An ancillary data set consisting of the agronomic and physical characteristics of the soybean field is described. The results indicate that the distribution of reflectance from a soybean field is a function of the solar illumination and viewing geometry, wavelength and row direction, as well as the state of development of the canopy. Shadows between rows greatly affected the reflectance in the visible wavelength bands and to a lesser extent in the near infrared wavelengths. A model is proposed that describes the reflectance variation as a function of projected solar and projected viewing angles. The model appears to approximate the reflectance variations in the visible wavelength bands from a canopy with well defined row structure.

Developmental prosopagnosia and super-recognition: no special role for surface reflectance processing

PubMed Central

Russell, Richard; Chatterjee, Garga; Nakayama, Ken

2011-01-01

Face recognition by normal subjects depends in roughly equal proportions on shape and surface reflectance cues, while object recognition depends predominantly on shape cues. It is possible that developmental prosopagnosics are deficient not in their ability to recognize faces per se, but rather in their ability to use reflectance cues. Similarly, super-recognizers’ exceptional ability with face recognition may be a result of superior surface reflectance perception and memory. We tested this possibility by administering tests of face perception and face recognition in which only shape or reflectance cues are available to developmental prosopagnosics, super-recognizers, and control subjects. Face recognition ability and the relative use of shape and pigmentation were unrelated in all the tests. Subjects who were better at using shape or reflectance cues were also better at using the other type of cue. These results do not support the proposal that variation in surface reflectance perception ability is the underlying cause of variation in face recognition ability. Instead, these findings support the idea that face recognition ability is related to neural circuits using representations that integrate shape and pigmentation information. PMID:22192636

Three-dimensional simulations of National Ignition Facility implosions: Insight into experimental observablesa)

NASA Astrophysics Data System (ADS)

Spears, Brian K.; Munro, David H.; Sepke, Scott; Caggiano, Joseph; Clark, Daniel; Hatarik, Robert; Kritcher, Andrea; Sayre, Daniel; Yeamans, Charles; Knauer, James; Hilsabeck, Terry; Kilkenny, Joe

2015-05-01

We simulate in 3D both the hydrodynamics and, simultaneously, the X-ray and neutron diagnostic signatures of National Ignition Facility (NIF) implosions. We apply asymmetric radiation drive to study the impact of low mode asymmetry on diagnostic observables. We examine X-ray and neutron images as well as neutron spectra for these perturbed implosions. The X-ray images show hot spot evolution on small length scales and short time scales, reflecting the incomplete stagnation seen in the simulation. The neutron images show surprising differences from the X-ray images. The neutron spectra provide additional measures of implosion asymmetry. Flow in the hot spot alters the neutron spectral peak, namely, the peak location and width. The changes in the width lead to a variation in the apparent temperature with viewing angle that signals underlying hot spot asymmetry. We compare our new expectations based on the simulated data with NIF data. We find that some recent cryogenic layered experiments show appreciable temperature anisotropy indicating residual flow in the hot spot. We also find some trends in the data that do not reflect our simulation and theoretical understanding.

Exploring Asteroid Interiors: The Deep Interior Mission Concept

NASA Technical Reports Server (NTRS)

Asphaug, E.; Belton, M. J. S.; Cangahuala, A.; Keith, L.; Klaasen, K.; McFadden, L.; Neumann, G.; Ostro, S. J.; Reinert, R.; Safaeinili, A.

2003-01-01

Deep Interior is a mission to determine the geophysical properties of near-Earth objects, including the first volumetric image of the interior of an asteroid. Radio reflection tomography will image the 3D distribution of complex dielectric properties within the 1 km rendezvous target and hence map structural, density or compositional variations. Laser altimetry and visible imaging will provide high-resolution surface topography. Smart surface pods culminating in blast experiments, imaged by the high frame rate camera and scanned by lidar, will characterize active mechanical behavior and structure of surface materials, expose unweathered surface for NIR analysis, and may enable some characterization of bulk seismic response. Multiple flybys en route to this target will characterize a diversity of asteroids, probing their interiors with non-tomographic radar reflectance experiments. Deep Interior is a natural follow-up to the NEARShoemaker mission and will provide essential guidance for future in situ asteroid and comet exploration. While our goal is to learn the interior geology of small bodies and how their surfaces behave, the resulting science will enable pragmatic technologies required of hazard mitigation and resource utilization.

Longitudinal Stroop Score changes in adolescent females with PTSD.

PubMed

Salazar, Jose; Motta, Robert

2011-01-01

This study is a preliminary investigation that analyzed whether or not the Emotional Stroop procedure would be able to detect the changes in PTSD levels of individuals as they undergo treatment for that disorder. This repeated measures, small n study utilized 8 in-patient adolescent females with a history of sexual abuse and an Axis I diagnosis of PTSD. Individuals were given the Emotional Stroop procedure and two standardized, self-report measures of PTSD every two weeks over the course offive months. In addition, daily point sheets of adaptive behavior were also collected. The individual's change on the standardized measures was compared against their change in reaction time on the Emotional Stroop procedure, and changes in the percentage of time the individual earned privileges based on the behavioral management system. The results provided some promising information that suggests that these measures do co-vary and that the Emotional Stroop does indeed reflect variations in levels of PTSD. This is the first study to show that therapeutic changes in PTSD are reflected in changing reaction times on the Emotional Stroop.

A spectral reflectance study (0.4-2.5 μm) of selected playa evaporite mineral deposits and related geochemical processes

USGS Publications Warehouse

Crowley, James K.

1990-01-01

Playa evaporite mineral deposits show major compositional variations related to differences in lithology, hydrology, and groundwater geochemistry. The use of visible and near-infrared (VNIR) spectral reflectance measurements as a technique for investigating the mineralogy of playa efflorescent crusts is examined. Samples of efflorescent crust were collected from 4 playa: Bristol Dry Lake, Saline Valley, Teels Marsh, and Rhodes Marsh--all located in eastern California and western Nevada. Laboratory and field spectral analyses coupled with X-ray diffraction analyses of the crusts yielded the following observations: VNIR spectra of unweathered salt crusts can be used to infer the general chemistry of near-surface brines; VNIR spectra are very sensitive for detecting minor hydrate mineral phases contained in mixtures with anhydrous, spectrally featureless, minerals such as halite (NaCl) and thernardite (Na2So4); borate minerals exhibit particularly strong VNIR spectral features that permit small amounts of borate to be detected in efflorescent salt crusts; remote sensing spectral measurements of playa efflorescent crusts may have applications in global studies of playa brines and minerals.

Modelling the optical response of human retinal photoreceptors to plane wave illumination with the finite integration technique

NASA Astrophysics Data System (ADS)

Akhlagh Moayed, Alireza; Dang, Shannon; Ramahi, Omar M.; Bizheva, Kostadinka K.

2009-02-01

The early stages of ocular diseases such as Diabetic Retinopathy are manifested by morphological changes in retinal tissue occurring on cellular level. Therefore, a number of ophthalmic diseases can be diagnosed at an early stage by detecting spatial and temporal variations in the scattering profile of retinal tissue. It was recently demonstrated that, OCT can be used to probe the functional response of retinal photoreceptors to external light stimulation [1]-[3]. fUHROCT measures localized differential changes in the retina reflectivity over time resulting from external light stimulation of the retina. Currently the origins of the observed reflectivity changes are not well understood. However, due to the complex nature of retinal physiology using purely experimental approaches in this case is problematic. For example fUHROCT is sensitive to small changes in the refractive index of biological tissue which as demonstrated previously, can result from a number of processes such as membrane hyperpolarization, osmotic swelling, metabolic changes, etc. In this paper, we present a computational model of interaction between photoreceptor cells and optical plane wave based on the Finite Integration Technique (FIT).

Introgression Makes Waves in Inferred Histories of Effective Population Size.

PubMed

Hawks, John

2017-01-01

Human populations have a complex history of introgression and of changing population size. Human genetic variation has been affected by both these processes, so inference of past population size depends upon the pattern of gene flow and introgression among past populations. One remarkable aspect of human population history as inferred from genetics is a consistent "wave" of larger effective population sizes, found in both African and non-African populations, that appears to reflect events prior to the last 100,000 years. I carried out a series of simulations to investigate how introgression and gene flow from genetically divergent ancestral populations affect the inference of ancestral effective population size. Both introgression and gene flow from an extinct, genetically divergent population consistently produce a wave in the history of inferred effective population size. The time and amplitude of the wave reflect the time of origin of the genetically divergent ancestral populations and the strength of introgression or gene flow. These results demonstrate that even small fractions of introgression or gene flow from ancient populations may have visible effects on the inference of effective population size.

Angular and Seasonal Variation of Spectral Surface Reflectance Ratios: Implications for the Remote Sensing of Aerosol over Land

NASA Technical Reports Server (NTRS)

Remer, L. A.; Wald, A. E.; Kaufman, Y. J.

1999-01-01

We obtain valuable information on the angular and seasonal variability of surface reflectance using a hand-held spectrometer from a light aircraft. The data is used to test a procedure that allows us to estimate visible surface reflectance from the longer wavelength 2.1 micrometer channel (mid-IR). Estimating or avoiding surface reflectance in the visible is a vital first step in most algorithms that retrieve aerosol optical thickness over land targets. The data indicate that specular reflection found when viewing targets from the forward direction can severely corrupt the relationships between the visible and 2.1 micrometer reflectance that were derived from nadir data. There is a month by month variation in the ratios between the visible and the mid-IR, weakly correlated to the Normalized Difference Vegetation Index (NDVI). If specular reflection is not avoided, the errors resulting from estimating surface reflectance from the mid-IR exceed the acceptable limit of DELTA-rho approximately 0.01 in roughly 40% of the cases, using the current algorithm. This is reduced to 25% of the cases if specular reflection is avoided. An alternative method that uses path radiance rather than explicitly estimating visible surface reflectance results in similar errors. The two methods have different strengths and weaknesses that require further study.

Geographical and Temporal Variations in Female Breast Cancer Mortality in the Municipalities of Andalusia (Southern Spain).

PubMed

Ocaña-Riola, Ricardo; Montaño-Remacha, Carmen; Mayoral-Cortés, José María

2016-11-22

The last published figures have shown geographical variations in mortality with respect to female breast cancer in European countries. However, national health policies need a dynamic image of the geographical variations within the country. The aim of this paper was to describe the spatial distribution of age-specific mortality rates from female breast cancer in the municipalities of Andalusia (southern Spain) and to analyze its evolution over time from 1981 to 2012. An ecological study was devised. Two spatio-temporal hierarchical Bayesian models were estimated. One of these was used to estimate the age-specific mortality rate for each municipality, together with its time trends, and the other was used to estimate the age-specific rate ratio compared with Spain as a whole. The results showed that 98% of the municipalities exhibited a decreasing or a flat mortality trend for all the age groups. In 2012, the geographical variability of the age-specific mortality rates was small, especially for population groups below 65. In addition, more than 96.6% of the municipalities showed an age-specific mortality rate similar to the corresponding rate for Spain, and there were no identified significant clusters. This information will contribute towards a reflection on the past, present and future of breast cancer outcomes in Andalusia.

Geographical and Temporal Variations in Female Breast Cancer Mortality in the Municipalities of Andalusia (Southern Spain)

PubMed Central

Ocaña-Riola, Ricardo; Montaño-Remacha, Carmen; Mayoral-Cortés, José María

2016-01-01

The last published figures have shown geographical variations in mortality with respect to female breast cancer in European countries. However, national health policies need a dynamic image of the geographical variations within the country. The aim of this paper was to describe the spatial distribution of age-specific mortality rates from female breast cancer in the municipalities of Andalusia (southern Spain) and to analyze its evolution over time from 1981 to 2012. An ecological study was devised. Two spatio-temporal hierarchical Bayesian models were estimated. One of these was used to estimate the age-specific mortality rate for each municipality, together with its time trends, and the other was used to estimate the age-specific rate ratio compared with Spain as a whole. The results showed that 98% of the municipalities exhibited a decreasing or a flat mortality trend for all the age groups. In 2012, the geographical variability of the age-specific mortality rates was small, especially for population groups below 65. In addition, more than 96.6% of the municipalities showed an age-specific mortality rate similar to the corresponding rate for Spain, and there were no identified significant clusters. This information will contribute towards a reflection on the past, present and future of breast cancer outcomes in Andalusia. PMID:27879690

Toward understanding the structural heterogeneity and ion pair stability in dicationic ionic liquids.

PubMed

Li, Song; Bañuelos, José Leobardo; Zhang, Pengfei; Feng, Guang; Dai, Sheng; Rother, Gernot; Cummings, Peter T

2014-12-07

The structural and dynamical properties of dicationic ionic liquids (DILs) [Cn(mim)2](Tf2N)2, that is, 3-methylimidazolium dications separated by an alkyl chain and with bis(trifluoromethylsulfonyl)amide as the anion, were investigated by molecular dynamics (MD) simulation in combination with small/wide-angle X-ray scattering (SWAXS) measurements. Enhanced spatial heterogeneity is observed as the DIL chain length is increased, characterized by the changes in the scattering and the increased heterogeneity order parameter (HOP). Temperature variation imposes only slight influences on the local structures of DILs compared to monocationic ionic liquids (MILs). The peaks at 0.9 Å(-1) and 1.4 Å(-1) of the structure function shift towards low Q as the temperature increases, in a similar manner to MILs, and changes in peak positions in response to temperature changes are reflected in HOP variations. However, the prepeak shift with increasing temperature is ∼3 times smaller in DILs compared to MILs, and both MD and SWAXS indicate a DIL-specific prepeak shifting. Furthermore, the high ion pair/ion cage stability in DILs is indicative of high thermal stability and relative insensitivity of structural heterogeneity to temperature variation, which might be caused by the stronger Coulombic interactions in DILs.

Discrimination of fish oil and mineral oil slicks on sea water

NASA Technical Reports Server (NTRS)

Mac Dowall, J.

1969-01-01

Fish oil and mineral oil slicks on sea water can be discriminated by their different spreading characteristics and by their reflectivities and color variations over a range of wavelengths. Reflectivities of oil and oil films are determined using a duel beam reflectance apparatus.

Seasonal and spatial variations in fish and macrocrustacean assemblage structure in Mad Island Marsh estuary, Texas

NASA Astrophysics Data System (ADS)

Akin, S.; Winemiller, K. O.; Gelwick, F. P.

2003-05-01

Fish and macrocrustacean assemblage structure was analyzed along an estuarine gradient at Mad Island Marsh (MIM), Matagorda Bay, TX, during March 1998-August 1999. Eight estuarine-dependent fish species accounted for 94% of the individual fishes collected, and three species accounted for 96% of macrocrustacean abundance. Consistent with evidence from other Gulf of Mexico estuarine studies, species richness and abundance were highest during late spring and summer, and lowest during winter and early spring. Sites near the bay supported the most individuals and species. Associations between fish abundance and environmental variables were examined with canonical correspondence analysis. The dominant gradient was associated with water depth and distance from the bay. The secondary gradient reflected seasonal variation and was associated with temperature, salinity, dissolved oxygen, and vegetation cover. At the scales examined, estuarine biota responded to seasonal variation more than spatial variation. Estuarine-dependent species dominated the fauna and were common throughout the open waters of the shallow lake during winter-early spring when water temperature and salinity were low and dissolved oxygen high. During summer-early fall, sub-optimal environmental conditions (high temperature, low DO) in upper reaches accounted for strong spatial variation in assemblage composition. Small estuarine-resident fishes and the blue crab ( Callinectes sapidus) were common in warm, shallow, vegetated inland sites during summer-fall. Estuarine-dependent species were common at deeper, more saline locations near the bay during this period. During summer, freshwater species, such as gizzard shad ( Dorosoma cepedianum) and gars ( Lepisosteus spp.), were positively associated with water depth and proximity to the bay. The distribution and abundance of fishes in MIM appear to result from the combined effects of endogenous, seasonal patterns of reproduction and migration operating on large spatial scales, and species-specific response to local environmental variation.

Visibility vs. biomass in flowers: exploring corolla allocation in Mediterranean entomophilous plants

PubMed Central

Herrera, Javier

2009-01-01

Background and Aims While pollinators may in general select for large, morphologically uniform floral phenotypes, drought stress has been proposed as a destabilizing force that may favour small flowers and/or promote floral variation within species. Methods The general validity of this concept was checked by surveying a taxonomically diverse array of 38 insect-pollinated Mediterranean species. The interplay between fresh biomass investment, linear size and percentage corolla allocation was studied. Allometric relationships between traits were investigated by reduced major-axis regression, and qualitative correlates of floral variation explored using general linear-model MANOVA. Key Results Across species, flowers were perfectly isometrical with regard to corolla allocation (i.e. larger flowers were just scaled-up versions of smaller ones and vice versa). In contrast, linear size and biomass varied allometrically (i.e. there were shape variations, in addition to variations in size). Most floral variables correlated positively and significantly across species, except corolla allocation, which was largely determined by family membership and floral symmetry. On average, species with bilateral flowers allocated more to the corolla than those with radial flowers. Plant life-form was immaterial to all of the studied traits. Flower linear size variation was in general low among conspecifics (coefficients of variation around 10 %), whereas biomass was in general less uniform (e.g. 200–400 mg in Cistus salvifolius). Significant among-population differences were detected for all major quantitative floral traits. Conclusions Flower miniaturization can allow an improved use of reproductive resources under prevailingly stressful conditions. The hypothesis that flower size reflects a compromise between pollinator attraction, water requirements and allometric constraints among floral parts is discussed. PMID:19258340

Phenotypic variation in California populations of valley oak (Quercus lobata Née) sampled along elevational gradients

Treesearch

Ana L. Albarrán-Lara; Jessica W. Wright; Paul F. Gugger; Annette Delfino-Mix; Juan Manuel Peñaloza-Ramírez; Victoria L. Sork

2015-01-01

California oaks exhibit tremendous phenotypic variation throughout their range. This variation reflects phenotypic plasticity in tree response to local environmental conditions as well as genetic differences underlying those phenotypes. In this study, we analyze phenotypic variation in leaf traits for valley oak adults sampled along three elevational transects and in...

Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases

PubMed Central

Schadt, Eric E.; Banerjee, Onureena; Fang, Gang; Feng, Zhixing; Wong, Wing H.; Zhang, Xuegong; Kislyuk, Andrey; Clark, Tyson A.; Luong, Khai; Keren-Paz, Alona; Chess, Andrew; Kumar, Vipin; Chen-Plotkin, Alice; Sondheimer, Neal; Korlach, Jonas; Kasarskis, Andrew

2013-01-01

Current generation DNA sequencing instruments are moving closer to seamlessly sequencing genomes of entire populations as a routine part of scientific investigation. However, while significant inroads have been made identifying small nucleotide variation and structural variations in DNA that impact phenotypes of interest, progress has not been as dramatic regarding epigenetic changes and base-level damage to DNA, largely due to technological limitations in assaying all known and unknown types of modifications at genome scale. Recently, single-molecule real time (SMRT) sequencing has been reported to identify kinetic variation (KV) events that have been demonstrated to reflect epigenetic changes of every known type, providing a path forward for detecting base modifications as a routine part of sequencing. However, to date no statistical framework has been proposed to enhance the power to detect these events while also controlling for false-positive events. By modeling enzyme kinetics in the neighborhood of an arbitrary location in a genomic region of interest as a conditional random field, we provide a statistical framework for incorporating kinetic information at a test position of interest as well as at neighboring sites that help enhance the power to detect KV events. The performance of this and related models is explored, with the best-performing model applied to plasmid DNA isolated from Escherichia coli and mitochondrial DNA isolated from human brain tissue. We highlight widespread kinetic variation events, some of which strongly associate with known modification events, while others represent putative chemically modified sites of unknown types. PMID:23093720

Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases.

PubMed

Schadt, Eric E; Banerjee, Onureena; Fang, Gang; Feng, Zhixing; Wong, Wing H; Zhang, Xuegong; Kislyuk, Andrey; Clark, Tyson A; Luong, Khai; Keren-Paz, Alona; Chess, Andrew; Kumar, Vipin; Chen-Plotkin, Alice; Sondheimer, Neal; Korlach, Jonas; Kasarskis, Andrew

2013-01-01

Current generation DNA sequencing instruments are moving closer to seamlessly sequencing genomes of entire populations as a routine part of scientific investigation. However, while significant inroads have been made identifying small nucleotide variation and structural variations in DNA that impact phenotypes of interest, progress has not been as dramatic regarding epigenetic changes and base-level damage to DNA, largely due to technological limitations in assaying all known and unknown types of modifications at genome scale. Recently, single-molecule real time (SMRT) sequencing has been reported to identify kinetic variation (KV) events that have been demonstrated to reflect epigenetic changes of every known type, providing a path forward for detecting base modifications as a routine part of sequencing. However, to date no statistical framework has been proposed to enhance the power to detect these events while also controlling for false-positive events. By modeling enzyme kinetics in the neighborhood of an arbitrary location in a genomic region of interest as a conditional random field, we provide a statistical framework for incorporating kinetic information at a test position of interest as well as at neighboring sites that help enhance the power to detect KV events. The performance of this and related models is explored, with the best-performing model applied to plasmid DNA isolated from Escherichia coli and mitochondrial DNA isolated from human brain tissue. We highlight widespread kinetic variation events, some of which strongly associate with known modification events, while others represent putative chemically modified sites of unknown types.

Small-scale density variations in the lunar crust revealed by GRAIL

NASA Astrophysics Data System (ADS)

Jansen, J. C.; Andrews-Hanna, J. C.; Li, Y.; Lucey, P. G.; Taylor, G. J.; Goossens, S.; Lemoine, F. G.; Mazarico, E.; Head, J. W.; Milbury, C.; Kiefer, W. S.; Soderblom, J. M.; Zuber, M. T.

2017-07-01

Data from the Gravity Recovery and Interior Laboratory (GRAIL) mission have revealed that ∼98% of the power of the gravity signal of the Moon at high spherical harmonic degrees correlates with the topography. The remaining 2% of the signal, which cannot be explained by topography, contains information about density variations within the crust. These high-degree Bouguer gravity anomalies are likely caused by small-scale (10‧s of km) shallow density variations. Here we use gravity inversions to model the small-scale three-dimensional variations in the density of the lunar crust. Inversion results from three non-descript areas yield shallow density variations in the range of 100-200 kg/m3. Three end-member scenarios of variations in porosity, intrusions into the crust, and variations in bulk crustal composition were tested as possible sources of the density variations. We find that the density anomalies can be caused entirely by changes in porosity. Characteristics of density anomalies in the South Pole-Aitken basin also support porosity as a primary source of these variations. Mafic intrusions into the crust could explain many, but not all of the anomalies. Additionally, variations in crustal composition revealed by spectral data could only explain a small fraction of the density anomalies. Nevertheless, all three sources of density variations likely contribute. Collectively, results from this study of GRAIL gravity data, combined with other studies of remote sensing data and lunar samples, show that the lunar crust exhibits variations in density by ± 10% over scales ranging from centimeters to 100‧s of kilometers.

Small-Scale Density Variations in the Lunar Crust Revealed by GRAIL

NASA Technical Reports Server (NTRS)

Jansen, J. C.; Andrews-Hanna, J. C.; Li, Y.; Lucey, P. G.; Taylor, G. J.; Goossens, S.; Lemoine, F. G.; Mazarico, E.; Head, J. W., III; Milbury, C.;

TU-F-CAMPUS-T-04: Variations in Nominally Identical Small Fields From Photon Jaw Reproducibility and Associated Effects On Small Field Dosimetric Parameters

DOE Office of Scientific and Technical Information (OSTI.GOV)

Muir, B R; McEwen, M R

2015-06-15

Purpose: To investigate uncertainties in small field output factors and detector specific correction factors from variations in field size for nominally identical fields using measurements and Monte Carlo simulations. Methods: Repeated measurements of small field output factors are made with the Exradin W1 (plastic scintillation detector) and the PTW microDiamond (synthetic diamond detector) in beams from the Elekta Precise linear accelerator. We investigate corrections for a 0.6x0.6 cm{sup 2} nominal field size shaped with secondary photon jaws at 100 cm source to surface distance (SSD). Measurements of small field profiles are made in a water phantom at 10 cm depthmore » using both detectors and are subsequently used for accurate detector positioning. Supplementary Monte Carlo simulations with EGSnrc are used to calculate the absorbed dose to the detector and absorbed dose to water under the same conditions when varying field size. The jaws in the BEAMnrc model of the accelerator are varied by a reasonable amount to investigate the same situation without the influence of measurements uncertainties (such as detector positioning or variation in beam output). Results: For both detectors, small field output factor measurements differ by up to 11 % when repeated measurements are made in nominally identical 0.6x0.6 cm{sup 2} fields. Variations in the FWHM of measured profiles are consistent with field size variations reported by the accelerator. Monte Carlo simulations of the dose to detector vary by up to 16 % under worst case variations in field size. These variations are also present in calculations of absorbed dose to water. However, calculated detector specific correction factors are within 1 % when varying field size because of cancellation of effects. Conclusion: Clinical physicists should be aware of potentially significant uncertainties in measured output factors required for dosimetry of small fields due to field size variations for nominally identical fields.« less

Piscivore diet response to a collapse in pelagic prey populations

USGS Publications Warehouse

Zeug, Steven; Feyrer, Frederick; Brodsky, Annie; Melgo, Jenny

2017-01-01

Pelagic fish populations in the upper San Francisco Estuary have experienced significant declines since the turn of the century; a pattern known as the pelagic organism decline (POD). This study investigated food habits of piscivorous fishes over two consecutive fall seasons following the decline of pelagic fish prey. Specifically, this study addressed the contribution of pelagic versus benthic prey to piscivorous fish diets, including the frequency of predation on special-status pelagic species, and the spatial variability in prey consumption. The piscivore community was dominated by Striped Bass and also included small numbers of Sacramento Pikeminnow and Largemouth Bass. Overall, pelagic prey items contributed less than 10% of the diet by weight in both years, whereas pre-POD studies gleaned from the literature found contributions of 39–100%, suggesting a major switch from pelagic to benthic prey resources. Between-year variation in piscivore diets reflected differences in environmental conditions associated with variation in freshwater outflow. No special status fish species were detected in any of the piscivore stomachs examined. The consequences of this pelagic to benthic diet shift warrants further investigation to understand its ecological relevance.

Turbomachine Sealing and Secondary Flows - Part 3. Part 3; Review of Power-Stream Support, Unsteady Flow Systems, Seal and Disk Cavity Flows, Engine Externals, and Life and Reliability Issues

NASA Technical Reports Server (NTRS)

Hendricks, R. C.; Steinetz, B. M.; Zaretsky, E. V.; Athavale, M. M.; Przekwas, A. J.

2004-01-01

The issues and components supporting the engine power stream are reviewed. It is essential that companies pay close attention to engine sealing issues, particularly on the high-pressure spool or high-pressure pumps. Small changes in these systems are reflected throughout the entire engine. Although cavity, platform, and tip sealing are complex and have a significant effect on component and engine performance, computational tools (e.g., NASA-developed INDSEAL, SCISEAL, and ADPAC) are available to help guide the designer and the experimenter. Gas turbine engine and rocket engine externals must all function efficiently with a high degree of reliability in order for the engine to run but often receive little attention until they malfunction. Within the open literature statistically significant data for critical engine components are virtually nonexistent; the classic approach is deterministic. Studies show that variations with loading can have a significant effect on component performance and life. Without validation data they are just studies. These variations and deficits in statistical databases require immediate attention.

Sex-specific differences of craniofacial traits in Croatia: the impact of environment in a small geographic area.

PubMed

Buretic-Tomljanovic, Alena; Giacometti, Jasminka; Ostojic, Sasa; Kapovic, Miljenko

2007-01-01

Craniometric variation in humans reflects different genetic and environmental influences. Long-term climatic adaptation is less likely to show an impact on size and shape variation in a small local area than at the global level. The aim of this work was to assess the contribution of the particular environmental factors to body height and craniofacial variability in a small geographic area of Croatia. A total of 632 subjects, aged 18-21, participated in the survey. Body height, head length, head breadth, head height, head circumference, cephalic index, morphological face height, face breadth, and facial index were analysed regarding geographic, climatic and dietary conditions in different regions of the country, and correlated with the specific climatic variables (cumulative multiyear sunshine duration, cumulative multiyear average precipitation, multiyear average air temperatures) and calcium concentrations in drinking water. Significant differences between groups classified according to geographic, climatic or dietary affiliation, and the impact of the environmental predictors on the variation in the investigated traits were assessed using multiple forward stepwise regression analyses. Higher body height measures in both sexes were significantly correlated with Mediterranean diet type. Mediterranean diet type also contributed to higher head length and head circumference measures in females. Cephalic index values correlated to geographic regions in both sexes, showing an increase from southern to eastern Croatia. In the same direction, head length significantly decreased in males and head breadth increased in females. Mediterranean climate was associated with higher and narrower faces in females. The analysis of the particular climatic variables did not reveal a significant influence on body height in either sex. Concurrently, climatic features influenced all craniofacial traits in females and only head length and facial index in males. Mediterranean climate, characterized by higher average sunshine duration, higher average precipitation and higher average air temperatures, was associated with longer, higher and narrower skulls, higher head circumference, lower cephalic index, and higher and narrower faces (lower facial index). Calcium concentrations in drinking water did not correlate significantly with any dependent variable. A significant effect of environmental factors on body height and craniofacial variability was found in Croatian young adult population. This effect was more pronounced in females, revealing sex-specific craniofacial differentiation. However, the impact of environment was low and may explain only 1.0-7.32% variation of the investigated traits.

Hyperion Studies Of Crop Stress In Mexico

NASA Technical Reports Server (NTRS)

Lobell, David B.; Asner, Gregory P.

2004-01-01

Satellite-based measurements of crop stress could provide much needed information for cropland management, especially in developing countries where other precision agriculture technologies are too expensive (Pierce and Nowak 1999; Robert 2002). For example, detection of areas that are nitrogen deficient or water stressed could guide fertilizer and water management decisions for all farmers within the swath of the satellite. Several approaches have been proposed to quantify canopy nutrient or water content based on spectral reflectance, most of which involve combinations of reflectance in the form of vegetation indices. While these indices are designed to maximize sensitivity to leaf chemistry, variations in other aspects of plant canopies may significantly impact remotely sensed reflectance. These confounding factors include variations in canopy structural properties (e.g., leaf area index, leaf angle distribution) as well as the extent of canopy cover, which determines the amount of exposed bare soil within a single pixel. In order to assess the utility of spectral indices for monitoring crop stress, it is therefore not only necessary to establish relationships at the leaf level, but also to test the relative importance of variations in other canopy attributes at the spatial scale of the remote sensing measurement. In this context, the relative importance of a given attribute will depend on (1) the sensitivity of the reflectance index to variation in the attribute and (2) the degree to which the attribute varies spatially and temporally.

Diffuse near-infrared reflectance spectroscopy during heatstroke in a mouse model: pilot study.

PubMed

Abookasis, David; Zafrir, Elad; Nesher, Elimelech; Pinhasov, Albert; Sternklar, Shmuel; Mathews, Marlon S

2012-10-01

Heatstroke, a form of hyperthermia, is a life-threatening condition characterized by an elevated core body temperature that rises above 40°C (104°F) and central nervous system dysfunction that results in delirium, convulsions, or coma. Without emergency treatment, the victim lapses into a coma and death soon follows. The study presented was conducted with a diffuse reflectance spectroscopy (DRS) setup to assess the effects of brain dysfunction that occurred during heatstroke in mice model (n=6). It was hypothesized that DRS can be utilized in small animal studies to monitor change in internal brain tissue temperature during heatstroke injury since it induces a sequence of pathologic changes that change the tissue composition and structure. Heatstroke was induced by exposure of the mice body under general anesthesia, to a high ambient temperature. A type of DRS in which the brain tissue was illuminated through the intact scalp with a broadband light source and diffuse reflected spectra was employed, taking in the spectral region between 650 and 1000 nm and acquired at an angle of 90 deg at a position on the scalp ∼12  mm from the illumination site. The temperature at the onset of the experiment was ∼34°C (rectal temperature) with increasing intervals of 1°C until mouse death. The increase in temperature caused optical scattering signal changes consistent with a structural alteration of brain tissue, ultimately resulting in death. We have found that the peak absorbance intensity and its second derivative at specific wavelengths correlate well with temperature with an exponential dependence. Based on these findings, in order to estimate the influence of temperature on the internal brain tissue a reflectance-temperature index was established and was seen to correlate as well with measured temperature. Overall, results indicate variations in neural tissue properties during heatstroke and the feasibility to monitor and assess internal temperature variations using DRS. Although several approaches have described the rise in temperature and its impact on tissue, to the best of our knowledge no information is available describing the ability to monitor temperature during heatstroke with DRS. The motivation of this study was to successfully describe this ability.

A FALSE POSITIVE FOR OCEAN GLINT ON EXOPLANETS: THE LATITUDE-ALBEDO EFFECT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cowan, Nicolas B.; Abbot, Dorian S.; Voigt, Aiko

2012-06-10

Identifying liquid water on the surface of planets is a high priority, as this traditionally defines habitability. One proposed signature of oceans is specular reflection ('glint'), which increases the apparent albedo of a planet at crescent phases. We post-process a global climate model of an Earth-like planet to simulate reflected light curves. Significantly, we obtain glint-like phase variations even though we do not include specular reflection in our model. This false positive is the product of two generic properties: (1) for modest obliquities, a planet's poles receive less orbit-averaged stellar flux than its equator, so the poles are more likelymore » to be covered in highly reflective snow and ice; and (2) we show that reflected light from a modest-obliquity planet at crescent phases probes higher latitudes than at gibbous phases, therefore a planet's apparent albedo will naturally increase at crescent phase. We suggest that this 'latitude-albedo effect' will operate even for large obliquities: in that case the equator receives less orbit-averaged flux than the poles, and the equator is preferentially sampled at crescent phase. Using rotational and orbital color variations to map the surfaces of directly imaged planets and estimate their obliquity will therefore be a necessary pre-condition for properly interpreting their reflected phase variations. The latitude-albedo effect is a particularly convincing glint false positive for zero-obliquity planets, and such worlds are not amenable to latitudinal mapping. This effect severely limits the utility of specular reflection for detecting oceans on exoplanets.« less

Visible/near-infrared spectra of experimentally shocked plagioclase feldspars

USGS Publications Warehouse

Johnson, J. R.; Horz, F.

2003-01-01

High shock pressures cause structural changes in plagioclase feldspars such as mechanical fracturing and disaggregation of the crystal lattice at submicron scales, the formation of diaplectic glass (maskelynite), and genuine melting. Past studies of visible/ near-infrared spectra of shocked feldspars demonstrated few spectral variations with pressure except for a decrease in the depth of the absorption feature near 1250-1300 nm and an overall decrease in reflectance. New visible/near-infrared spectra (400-2500 nm) of experimentally shocked (17-56 GPa) albite- and anorthite-rich rock powders demonstrate similar trends, including the loss of minor hydrated mineral bands near 1410, 1930, 2250, and 2350 nm. However, the most interesting new observations are increases in reflectance at intermediate pressures, followed by subsequent decreases in reflectance at higher pressures. The amount of internal scattering and overall sample reflectance is controlled by the relative proportions of micro-fractures, submicron grains, diaplectic glass, and melts formed during shock metamorphism. We interpret the observed reflectance increases at intermediate pressures to result from progressively larger proportions of submicron feldspar grains and diaplectic glass. The ensuing decreases in reflectance occur after diaplectic glass formation is complete and the proportion of genuine melt inclusions increases. The pressure regimes over which these reflectance variations occur differ between albite and anorthite, consistent with thermal infrared spectra of these samples and previous studies of shocked feldspars. These types of spectral variations associated with different peak shock pressures should be considered during interpretation and modeling of visible/near-infrared remotely sensed spectra of planetary and asteroidal surfaces.

Daytime Water Detection Based on Sky Reflections

NASA Technical Reports Server (NTRS)

Rankin, Arturo; Matthies, Larry; Bellutta, Paolo

2011-01-01

A water body s surface can be modeled as a horizontal mirror. Water detection based on sky reflections and color variation are complementary. A reflection coefficient model suggests sky reflections dominate the color of water at ranges > 12 meters. Water detection based on sky reflections: (1) geometrically locates the pixel in the sky that is reflecting on a candidate water pixel on the ground (2) predicts if the ground pixel is water based on color similarity and local terrain features. Water detection has been integrated on XUVs.

Field Investigations of the July 2015 Pyroclastic Density Current Deposits of Volcán de Colima, Mexico

NASA Astrophysics Data System (ADS)

Atlas, Z. D.; Macorps, E.; Charbonnier, S. J.; Varley, N. R.

2016-12-01

Small-volume pyroclastic density currents (PDCs) occur relatively frequently and pose severe threats to surrounding populations and infrastructures at active explosive volcanoes. They are characterized by short duration and complex multiphase flow dynamics due to time and space variability in their properties, which include amongst others, particle concentration, granulometry, componentry, bulk rheology and velocity. Field investigations of the deposits emplaced by small-volume concentrated PDCs aim to improve our understanding of the transport and depositional processes of these flows: time and space variations in flow dynamics within a PDC moving downslope will reflect on the distribution, grainsize and component characteristics of its deposits. Our study focuses on the recent events of July 10th and 11th, 2015 at Volcán de Colima (Mexico) where the collapse of the recent lava dome complex and a portion of the southern crater rim led to the emplacement of successive pulses of small-volume concentrated PDCs on the southern flank, along the Montegrande and San Antonio ravines. A 3-dimensional field analysis of the PDCs' deposit architecture, total grain size distribution and component properties together with a geomorphic analysis of the affected ravines provide new insights on the lateral and vertical variations of flow dynamics for some of these small-volume concentrated PDCs. Preliminary results reveal three stratigraphic units with massive block, lapilli, ash facies within the valley confined and concentrated overbank deposits with increasing content in fines with distance from the summit, suggesting an increase in fragmentation processes within the PDCs. The middle unit is characterized by a finer grainsize, a higher accidental lithic content and a lower free crystal content. Moreover, direct correlations are found between rapid changes in channel morphology and generation of overbank (unconfined) flows that escaped valley confines, which could provide the basis for defining hazard zonations of key areas at risk from future eruptions at Colima.

Small Engine Technology (SET) Task 23 ANOPP Noise Prediction for Small Engines, Wing Reflection Code

NASA Technical Reports Server (NTRS)

Lieber, Lysbeth; Brown, Daniel; Golub, Robert A. (Technical Monitor)

2000-01-01

The work performed under Task 23 consisted of the development and demonstration of improvements for the NASA Aircraft Noise Prediction Program (ANOPP), specifically targeted to the modeling of engine noise enhancement due to wing reflection. This report focuses on development of the model and procedure to predict the effects of wing reflection, and the demonstration of the procedure, using a representative wing/engine configuration.

Effect of Systematic Control of Pd Thickness and Annealing Temperature on the Fabrication and Evolution of Palladium Nanostructures on Si (111) via the Solid State Dewetting.

PubMed

Kunwar, Sundar; Pandey, Puran; Sui, Mao; Zhang, Quanzhen; Li, Ming-Yu; Lee, Jihoon

2017-12-01

Si-based optoelectronic devices embedded with metallic nanoparticles (NPs) have demonstrated the NP shape, size, spacing, and crystallinity dependent on light absorption and emission induced by the localized surface plasmon resonance. In this work, we demonstrate various sizes and configurations of palladium (Pd) nanostructures on Si (111) by the systematic thermal annealing with the variation of Pd thickness and annealing temperature. The evolution of Pd nanostructures are systematically controlled by the dewetting of thin film by means of the surface diffusion in conjunction with the surface and interface energy minimization and Volmer-Weber growth model. Depending on the control of deposition amount ranging between 0.5 and 100 nm at various annealing temperatures, four distinctive regimes of Pd nanostructures are demonstrated: (i) small pits and grain formation, (ii) nucleation and growth of NPs, (iii) lateral evolution of NPs, and (iv) merged nanostructures. In addition, by the control of annealing between 300 and 800 °C, the Pd nanostructures show the evolution of small pits and grains, isolated NPs, and finally, Pd NP-assisted nanohole formation along with the Si decomposition and Pd-Si inter-diffusion. The Raman analysis showed the discrepancies on phonon modes of Si (111) such that the decreased peak intensity with left shift after the fabrication of Pd nanostructures. Furthermore, the UV-VIS-NIR reflectance spectra revealed the existence of surface morphology dependent on absorption, scattering, and reflectance properties.

Effect of Systematic Control of Pd Thickness and Annealing Temperature on the Fabrication and Evolution of Palladium Nanostructures on Si (111) via the Solid State Dewetting

NASA Astrophysics Data System (ADS)

Kunwar, Sundar; Pandey, Puran; Sui, Mao; Zhang, Quanzhen; Li, Ming-Yu; Lee, Jihoon

2017-05-01

Si-based optoelectronic devices embedded with metallic nanoparticles (NPs) have demonstrated the NP shape, size, spacing, and crystallinity dependent on light absorption and emission induced by the localized surface plasmon resonance. In this work, we demonstrate various sizes and configurations of palladium (Pd) nanostructures on Si (111) by the systematic thermal annealing with the variation of Pd thickness and annealing temperature. The evolution of Pd nanostructures are systematically controlled by the dewetting of thin film by means of the surface diffusion in conjunction with the surface and interface energy minimization and Volmer-Weber growth model. Depending on the control of deposition amount ranging between 0.5 and 100 nm at various annealing temperatures, four distinctive regimes of Pd nanostructures are demonstrated: (i) small pits and grain formation, (ii) nucleation and growth of NPs, (iii) lateral evolution of NPs, and (iv) merged nanostructures. In addition, by the control of annealing between 300 and 800 °C, the Pd nanostructures show the evolution of small pits and grains, isolated NPs, and finally, Pd NP-assisted nanohole formation along with the Si decomposition and Pd-Si inter-diffusion. The Raman analysis showed the discrepancies on phonon modes of Si (111) such that the decreased peak intensity with left shift after the fabrication of Pd nanostructures. Furthermore, the UV-VIS-NIR reflectance spectra revealed the existence of surface morphology dependent on absorption, scattering, and reflectance properties.

Local extinction and recolonization, species effective population size, and modern human origins.

PubMed

Eller, Elise; Hawks, John; Relethford, John H

2004-10-01

A primary objection from a population genetics perspective to a multiregional model of modern human origins is that the model posits a large census size, whereas genetic data suggest a small effective population size. The relationship between census size and effective size is complex, but arguments based on an island model of migration show that if the effective population size reflects the number of breeding individuals and the effects of population subdivision, then an effective population size of 10,000 is inconsistent with the census size of 500,000 to 1,000,000 that has been suggested by archeological evidence. However, these models have ignored the effects of population extinction and recolonization, which increase the expected variance among demes and reduce the inbreeding effective population size. Using models developed for population extinction and recolonization, we show that a large census size consistent with the multiregional model can be reconciled with an effective population size of 10,000, but genetic variation among demes must be high, reflecting low interdeme migration rates and a colonization process that involves a small number of colonists or kin-structured colonization. Ethnographic and archeological evidence is insufficient to determine whether such demographic conditions existed among Pleistocene human populations, and further work needs to be done. More realistic models that incorporate isolation by distance and heterogeneity in extinction rates and effective deme sizes also need to be developed. However, if true, a process of population extinction and recolonization has interesting implications for human demographic history.

High Resolution Ecosystem Structure, Biomass and Blue Carbon stocks in Mangrove Ecosystems- Methods and Applications of Lidar, radar Interferometry and High Resolution imagery

NASA Astrophysics Data System (ADS)

Lagomasino, D.; Fatoyinbo, T. E.; Lee, S. K.; Feliciano, E. A.; Simard, M.; Trettin, C.

2016-12-01

Earth's climate is determined by the exchange of radiant energy between the Sun, Earth and space. The absorbed solar radiation (ASR) fuels the climate system, providing the energy required for atmospheric and oceanic motions, while the system cools by emitting outgoing longwave (LW) radiation to space. A central objective of the Clouds and the Earth's Radiant Energy System (CERES) is to produce a long-term global climate data record of Earth's radiation budget along with the associated atmospheric and surface properties that influence it. CERES data products utilize a number of data sources, including broadband radiometers measuring incoming and reflected solar radiation and OLR, polar orbiting and geostationary spectral imagers, meteorological, aerosol and ozone assimilation data, and snow/sea-ice maps based on microwave radiometer data. Here we use simple diagnostic model of Earth's albedo and CERES Energy Balanced and Filled (EBAF) Ed4.0 data for March 2000-February 2016 to quantify interannual variations in SW TOA flux associated with surface albedo and atmospheric reflectance and transmittance variations. Surface albedo variations account for <0.5% of the total SW TOA flux variance over the tropics and 4% globally. Variations in atmospheric reflectance and transmittance account for virtually all of the total SW TOA flux variance over the tropics and only 81% globally. The remaining 15% of the global SW TOA flux variance is explained by the co-variance of surface albedo and atmospheric reflectance/transmittance. Equatorward of 60-degree latitude, the atmospheric contribution exceeds that of the surface by at least an order-of-magnitude. In contrast, the surface and atmospheric variations contribute equally poleward of 60S and surface variations account for twice as much as the atmosphere poleward of 60N. However, as much as 40% of the total SW TOA flux variance poleward of 60N is explained by the covariance of surface albedo and atmospheric reflectance/transmittance, highlighting the tight coupling between sea-ice concentration and cloud properties over the Arctic Ocean.

Decomposing Shortwave Top-of-Atmosphere Radiative Flux Variability in Terms of Surface and Atmospheric Contributions Using CERES Observations

NASA Astrophysics Data System (ADS)

Loeb, N. G.; Wong, T.; Wang, H.

2017-12-01

Earth's climate is determined by the exchange of radiant energy between the Sun, Earth and space. The absorbed solar radiation (ASR) fuels the climate system, providing the energy required for atmospheric and oceanic motions, while the system cools by emitting outgoing longwave (LW) radiation to space. A central objective of the Clouds and the Earth's Radiant Energy System (CERES) is to produce a long-term global climate data record of Earth's radiation budget along with the associated atmospheric and surface properties that influence it. CERES data products utilize a number of data sources, including broadband radiometers measuring incoming and reflected solar radiation and OLR, polar orbiting and geostationary spectral imagers, meteorological, aerosol and ozone assimilation data, and snow/sea-ice maps based on microwave radiometer data. Here we use simple diagnostic model of Earth's albedo and CERES Energy Balanced and Filled (EBAF) Ed4.0 data for March 2000-February 2016 to quantify interannual variations in SW TOA flux associated with surface albedo and atmospheric reflectance and transmittance variations. Surface albedo variations account for <0.5% of the total SW TOA flux variance over the tropics and 4% globally. Variations in atmospheric reflectance and transmittance account for virtually all of the total SW TOA flux variance over the tropics and only 81% globally. The remaining 15% of the global SW TOA flux variance is explained by the co-variance of surface albedo and atmospheric reflectance/transmittance. Equatorward of 60-degree latitude, the atmospheric contribution exceeds that of the surface by at least an order-of-magnitude. In contrast, the surface and atmospheric variations contribute equally poleward of 60S and surface variations account for twice as much as the atmosphere poleward of 60N. However, as much as 40% of the total SW TOA flux variance poleward of 60N is explained by the covariance of surface albedo and atmospheric reflectance/transmittance, highlighting the tight coupling between sea-ice concentration and cloud properties over the Arctic Ocean.

Small- and Large-Effect Quantitative Trait Locus Interactions Underlie Variation in Yeast Sporulation Efficiency

PubMed Central

Lorenz, Kim; Cohen, Barak A.

2012-01-01

Quantitative trait loci (QTL) with small effects on phenotypic variation can be difficult to detect and analyze. Because of this a large fraction of the genetic architecture of many complex traits is not well understood. Here we use sporulation efficiency in Saccharomyces cerevisiae as a model complex trait to identify and study small-effect QTL. In crosses where the large-effect quantitative trait nucleotides (QTN) have been genetically fixed we identify small-effect QTL that explain approximately half of the remaining variation not explained by the major effects. We find that small-effect QTL are often physically linked to large-effect QTL and that there are extensive genetic interactions between small- and large-effect QTL. A more complete understanding of quantitative traits will require a better understanding of the numbers, effect sizes, and genetic interactions of small-effect QTL. PMID:22942125

The pQCT 'Bone Strength Indices' (BSIs, SSI). Relative mechanical impact and diagnostic value of the indicators of bone tissue and design quality employed in their calculation in healthy men and pre- and post-menopausal women.

PubMed

Cointry, G R; Ferretti, J L; Reina, P S; Nocciolino, L M; Rittweger, J; Capozza, R F

2014-03-01

The pQCT-assessed Bone Strength Indices (BSI's, SSI) depend on the product of a 'quality' indicator, the cortical vBMD (vCtD), and a 'design' indicator, one of the cross-sectional moments of inertia or related variables (MIs) in long bones. As the MIs vary naturally much more than the vCtD and represent different properties, it could be that the variation of the indices might not reflect the relative mechanical impact of the variation of their determinant factors in different individuals or circumstances. To understand this problem, we determined the vCtD and MI's in tibia scans of 232 healthy men and pre- and post-MP women, expressed in SD of the means calculated for each group, and analyzed the independent influence of 1 SD unit of variation of each factor on that of the indices by multiple correlations. Results showed: 1. that the independent influence of the MIs on the indices was generally larger than that of the vCtD, and 2. that in post-MP women the influence of the vCtD was larger than it was in the other groups. This confirms the view that inter-individual variation of vCtD is comparatively small, and that mechanical competence of human bone is mostly determined by 'design' factors.

Extreme ultraviolet reflectivity studies of gold on glass and metal substrates

NASA Technical Reports Server (NTRS)

Jelinsky, Sharon R.; Malina, Roger F.; Jelinsky, Patrick

1988-01-01

The paper reports measurements of the extreme ultraviolet reflectivity of gold from 44 to 920 A at grazing incidence. Gold was deposited using vacuum evaporation and electroplating on substrates of glass and polished nickel, respectively. Measurements are also presented of the extreme ultraviolet reflectivity of electroless nickel in the same wavelength region, where one of the polished nickel substrates was used as a sample. Derived optical constants for evaporated and electroplated gold and electroless nickel are presented. Additional studies of the effects of various contaminants on the EUV reflectivity are also reported. The variations of the optical constants are discussed in terms of density variations, surface roughness and contamination effects. These results ae reported as part of studies for the Extreme Ultraviolet Explorer satellite program to determine acceptance criteria for the EUV optics, contamination budgets and calibration plans.

Remote-sensing reflectance of turbid sediment-dominated waters. Reduction of sediment type variations and changing illumination conditions effects by use of reflectance ratios.

PubMed

Doxaran, David; Froidefond, Jean-Marie; Castaing, Patrice

2003-05-20

Variations of sediment type (grain size and refractive index) and changing illumination conditions affect the reflectance signal of coastal waters and limit the accuracy of sediment-concentration estimations from remote-sensing measurements. These effects are analyzed from numerous in situ remote-sensing measurements carried out in the Gironde and Loire Estuaries and then reduced and partly eliminated when reflectance ratios between the near infrared and the visible are considered. These ratios showed high correlation with the sediment concentration. On the basis of the obtained relationships, performing correspondence functions were established that allow an accurate estimation of suspended sediments in the estuaries from Système Probatoire d'Observation de la Terre, Landsat, and Sea-Viewing Wide Field-of-View Sensor data, independently of the date of acquisition.

Patients´ Variations of Reflection About and Understanding of Long-Term Illness- Impact of Illness Perception on Trust in Oneself or Others

PubMed Central

Nunstedt, Håkan; Rudolfsson, Gudrun; Alsen, Pia; Pennbrant, Sandra

2017-01-01

Background: Patients' understanding of their illness is of great importance for recovery. Lacking understanding of the illness is linked with the patients' level of reflection about and interest in understanding their illness. Objective: To describe patients’ variations of reflection about and understanding of their illness and how this understanding affects their trust in themselves or others. Method: The study is based on the “Illness perception” model. Latent content analysis was used for the data analysis. Individual, semi-structured, open-ended and face-to-face interviews were conducted with patients (n=11) suffering from a long-term illness diagnosed at least six months prior to the interview. Data collection took place in the three primary healthcare centres treating the participants. Results: The results show variations in the degree of reflection about illness. Patients search for deeper understanding of the illness for causal explanations, compare different perspectives for preventing complication of their illness, trust healthcare providers, and develop own strategies to manage life. Conclusion: Whereas some patients search for deeper understanding of their illness, other patients are less reflective and feel they can manage the illness without further understanding. Patients' understanding of their illness is related to their degree of trust in themselves or others. Patients whose illness poses an existential threat are more likely to reflect more about their illness and what treatment methods are available. PMID:28567169

What explains willingness to pay for smoking-cessation treatments - addiction level, quit-rate effectiveness or the opening bid?

PubMed

Olsen, Jan Abel; Røgeberg, Ole J; Stavem, Knut

2012-11-01

Several countries have now passed laws that place limitations on where smokers may smoke. A range of smoking-cessation treatments have become available, many of which have documented increased quit rates. Population surveys show that most smokers wish to quit, and most non-smokers would prefer to reduce the prevalence of smoking in society. The strengths of these preferences, however, as measured by their willingness to pay (WTP), have not yet been investigated. This study aims to identify variables that explain variations in people's answers to WTP questions on smoking-cessation treatments. A representative sample of the Norwegian population was asked their WTP in terms of an earmarked contribution to a public smoking-cessation programme. A sub-group of daily smokers was, in addition, asked about their WTP for a hypothetical treatment that would remove their urge to smoke. The impact of variation in the question format (different opening bids) on stated WTP was compared with that of factors suggested by economic theory, such as quit-rate effectiveness, degree of addiction as measured by the 12-item Cigarette Dependence Scale (CDS-12), and degree of peer group influence as measured by the proportion of one's friends who smoke. In both programmes, the most important determinant for explaining variations in WTP was the size of the opening bid. Differences in quit-rate effectiveness did not matter for people's WTP for the smoking-cessation programme. Addiction, and having a small proportion of friends who smoke, were positively associated with smokers' WTP to quit smoking. Variations in WTP were influenced more by how the question was framed in terms of differences in opening bids, than by variables reflecting the quality (effectiveness) and need (addiction level) for the good in question. While the WTP method is theoretically attractive, the findings that outcomes in terms of different quit rates did not affect WTP, and that WTP answers can be manipulated by the chosen opening bid, should raise further doubts on the ability of this method to provide valid and reliable answers that reflect true preferences for health and healthcare.

Ionospheric reflection coefficient for television signals

NASA Astrophysics Data System (ADS)

From, W. R.

1984-08-01

It has been shown that the ionospherically reflected field strength for 50 MHz signals varies (statistically) in proportion to about the 18th power of f(0)E(s) at the midpoint between transmitter and receiver. This note is to point out that this observation provides support for the theory that the horizontal structure of E(s) is due to a horizontal variation in the wind shear rather than horizontal convergence of metallic ions or a horizontal variation in the metallic column content.

Spatially Interpolated Disease Prevalence Estimation Using Collateral Indicators of Morbidity and Ecological Risk

PubMed Central

Congdon, Peter

2013-01-01

This paper considers estimation of disease prevalence for small areas (neighbourhoods) when the available observations on prevalence are for an alternative partition of a region, such as service areas. Interpolation to neighbourhoods uses a kernel method extended to take account of two types of collateral information. The first is morbidity and service use data, such as hospital admissions, observed for neighbourhoods. Variations in morbidity and service use are expected to reflect prevalence. The second type of collateral information is ecological risk factors (e.g., pollution indices) that are expected to explain variability in prevalence in service areas, but are typically observed only for neighbourhoods. An application involves estimating neighbourhood asthma prevalence in a London health region involving 562 neighbourhoods and 189 service (primary care) areas. PMID:24129116

Spatially interpolated disease prevalence estimation using collateral indicators of morbidity and ecological risk.

PubMed

Congdon, Peter

2013-10-14

This paper considers estimation of disease prevalence for small areas (neighbourhoods) when the available observations on prevalence are for an alternative partition of a region, such as service areas. Interpolation to neighbourhoods uses a kernel method extended to take account of two types of collateral information. The first is morbidity and service use data, such as hospital admissions, observed for neighbourhoods. Variations in morbidity and service use are expected to reflect prevalence. The second type of collateral information is ecological risk factors (e.g., pollution indices) that are expected to explain variability in prevalence in service areas, but are typically observed only for neighbourhoods. An application involves estimating neighbourhood asthma prevalence in a London health region involving 562 neighbourhoods and 189 service (primary care) areas.

Comparing TID simulations using 3-D ray tracing and mirror reflection

NASA Astrophysics Data System (ADS)

Huang, X.; Reinisch, B. W.; Sales, G. S.; Paznukhov, V. V.; Galkin, I. A.

2016-04-01

Measuring the time variations of Doppler frequencies and angles of arrival (AoA) of ionospherically reflected HF waves has been proposed as a means of detecting the occurrence of traveling ionospheric disturbances (TIDs). Simulations are made using ray tracing through the International Reference Ionosphere (IRI) electron density model in an effort to reproduce measured signatures. The TID is represented by a wavelike perturbation of the 3-D electron density traveling horizontally in the ionosphere with an amplitude that varies sinusoidally with time. By judiciously selecting the TID parameters the ray tracing simulation reproduces the observed Doppler frequencies and AoAs. Ray tracing in a 3-D realistic ionosphere is, however, excessively time consuming considering the involved homing procedures. It is shown that a carefully selected reflecting corrugated mirror can reproduce the time variations of the AoA and Doppler frequency. The results from the ray tracing through the IRI model ionosphere and the mirror model reflections are compared to assess the applicability of the mirror-reflection model.

Developmental prosopagnosia and super-recognition: no special role for surface reflectance processing.

PubMed

Russell, Richard; Chatterjee, Garga; Nakayama, Ken

2012-01-01

Face recognition by normal subjects depends in roughly equal proportions on shape and surface reflectance cues, while object recognition depends predominantly on shape cues. It is possible that developmental prosopagnosics are deficient not in their ability to recognize faces per se, but rather in their ability to use reflectance cues. Similarly, super-recognizers' exceptional ability with face recognition may be a result of superior surface reflectance perception and memory. We tested this possibility by administering tests of face perception and face recognition in which only shape or reflectance cues are available to developmental prosopagnosics, super-recognizers, and control subjects. Face recognition ability and the relative use of shape and pigmentation were unrelated in all the tests. Subjects who were better at using shape or reflectance cues were also better at using the other type of cue. These results do not support the proposal that variation in surface reflectance perception ability is the underlying cause of variation in face recognition ability. Instead, these findings support the idea that face recognition ability is related to neural circuits using representations that integrate shape and pigmentation information. Copyright © 2011 Elsevier Ltd. All rights reserved.

DARe: Dark Asteroid Rendezvous

NASA Technical Reports Server (NTRS)

Noll, K. S.; McFadden, L. A.; Rhoden, A. R.; Lim, L. F.; Boynton, W. V.; Carter, L. M.; Collins, G.; Englander, J. A.; Goossens, S. A.; Grundy, W. M.;

Attached cavitation at a small diameter ultrasonic horn tip

NASA Astrophysics Data System (ADS)

Žnidarčič, Anton; Mettin, Robert; Cairós, Carlos; Dular, Matevž

2014-02-01

Ultrasonic horn transducers are frequently used in applications of acoustic cavitation in liquids, for instance, for cell disruption or sonochemical reactions. They are operated typically in the frequency range up to about 50 kHz and have tip diameters from some mm to several cm. It has been observed that if the horn tip is sufficiently small and driven at high amplitude, cavitation is very strong, and the tip can be covered entirely by the gas/vapor phase for longer time intervals. A peculiar dynamics of the attached cavity can emerge with expansion and collapse at a self-generated frequency in the subharmonic range, i.e., below the acoustic driving frequency. Here, we present a systematic study of the cavitation dynamics in water at a 20 kHz horn tip of 3 mm diameter. The system was investigated by high-speed imaging with simultaneous recording of the acoustic emissions. Measurements were performed under variation of acoustic power, air saturation, viscosity, surface tension, and temperature of the liquid. Our findings show that the liquid properties play no significant role in the dynamics of the attached cavitation at the small ultrasonic horn. Also the variation of the experimental geometry, within a certain range, did not change the dynamics. We believe that the main two reasons for the peculiar dynamics of cavitation on a small ultrasonic horn are the higher energy density on a small tip and the inability of the big tip to "wash" away the gaseous bubbles. Calculation of the somewhat adapted Strouhal number revealed that, similar to the hydrodynamic cavitation, values which are relatively low characterize slow cavitation structure dynamics. In cases where the cavitation follows the driving frequency this value lies much higher - probably at Str > 20. In the spirit to distinguish the observed phenomenon with other cavitation dynamics at ultrasonic transducer surfaces, we suggest to term the observed phenomenon of attached cavities partly covering the full horn tip as "acoustic supercavitation." This reflects the conjecture that not the sound field in terms of acoustic (negative) pressure in the liquid is responsible for nucleation, but the motion of the transducer surface.

Isotopic structure of Lake Whitefish in Lake Huron: Evidence for regional and local populations based on resource use

USGS Publications Warehouse

Eberts, Rebecca L.; Wissel, Bjorn; Simpson, Gavin L.; Crawford, Stephen S.; Stott, Wendylee; Hanner, Robert H.; Manzon, Richard G.; Wilson, Joanna Y.; Boreham, Douglas R.; Somers, Christopher M.

2017-01-01

Lake Whitefish Coregonus clupeaformis is the most commercially valuable species in Lake Huron. The fishery for this species has historically been managed based on 25 management units (17 in Canada, 8 in the USA). However, congruence between the contemporary population structure of Lake Whitefish and management units is poorly understood. We used stable isotopes of carbon (δ13C) and nitrogen (δ15N), food web markers that reflect patterns in resource use (i.e., prey, location, habitat), to assess the population structure of spawning-phase Lake Whitefish collected from 32 sites (1,474 fish) across Lake Huron. We found large isotopic variation among fish from different sites (ranges: δ13C = 10.2‰, δ15N = 5.5‰) and variable niche size and levels of overlap (standard ellipse area = 1.0–4.3‰2). Lake Huron contained spawning-phase fish from four major isotopic clusters largely defined by extensive variation in δ13C, and the isotopic composition of fish sampled was spatially structured both within and between lake basins. Based on cluster compositions, we identified six putative regional groups, some of which represented sites of high diversity (three to four clusters) and others with less (one to two clusters). Analysis of isotopic values from Lake Whitefish collected from summer feeding locations and baseline prey items showed similar isotopic variation and established spatial linkage between spawning-phase and summer fish. Our results show that summer feeding location contributes strongly to the isotopic structure we observed in spawning-phase fish. One of the regional groups we identified in northern Georgian Bay is highly distinct based on isotopic composition and possibly ecologically unique within Lake Huron. Our findings are congruent with several previous studies using different markers (genetics, mark–recapture), and we conclude that current management units are generally too small and numerous to reflect the population structure of Lake Whitefish in Lake Huron.

Listening In on the Past: What Can Otolith δ18O Values Really Tell Us about the Environmental History of Fishes?

PubMed Central

Darnaude, Audrey M.; Sturrock, Anna; Trueman, Clive N.; Mouillot, David; EIMF; Campana, Steven E.; Hunter, Ewan

2014-01-01

Oxygen isotope ratios from fish otoliths are used to discriminate marine stocks and reconstruct past climate, assuming that variations in otolith δ18O values closely reflect differences in temperature history of fish when accounting for salinity induced variability in water δ18O. To investigate this, we exploited the environmental and migratory data gathered from a decade using archival tags to study the behaviour of adult plaice (Pleuronectes platessa L.) in the North Sea. Based on the tag-derived monthly distributions of the fish and corresponding temperature and salinity estimates modelled across three consecutive years, we first predicted annual otolith δ18O values for three geographically discrete offshore sub-stocks, using three alternative plausible scenarios for otolith growth. Comparison of predicted vs. measured annual δ18O values demonstrated >96% correct prediction of sub-stock membership, irrespective of the otolith growth scenario. Pronounced inter-stock differences in δ18O values, notably in summer, provide a robust marker for reconstructing broad-scale plaice distribution in the North Sea. However, although largely congruent, measured and predicted annual δ18O values of did not fully match. Small, but consistent, offsets were also observed between individual high-resolution otolith δ18O values measured during tag recording time and corresponding δ18O predictions using concomitant tag-recorded temperatures and location-specific salinity estimates. The nature of the shifts differed among sub-stocks, suggesting specific vital effects linked to variation in physiological response to temperature. Therefore, although otolith δ18O in free-ranging fish largely reflects environmental temperature and salinity, we counsel prudence when interpreting otolith δ18O data for stock discrimination or temperature reconstruction until the mechanisms underpinning otolith δ18O signature acquisition, and associated variation, are clarified. PMID:25279667

Phase mixing of Alfvén waves in axisymmetric non-reflective magnetic plasma configurations

NASA Astrophysics Data System (ADS)

Petrukhin, N. S.; Ruderman, M. S.; Shurgalina, E. G.

2018-02-01

We study damping of phase-mixed Alfvén waves propagating in non-reflective axisymmetric magnetic plasma configurations. We derive the general equation describing the attenuation of the Alfvén wave amplitude. Then we applied the general theory to a particular case with the exponentially divergent magnetic field lines. The condition that the configuration is non-reflective determines the variation of the plasma density along the magnetic field lines. The density profiles exponentially decreasing with the height are not among non-reflective density profiles. However, we managed to find non-reflective profiles that fairly well approximate exponentially decreasing density. We calculate the variation of the total wave energy flux with the height for various values of shear viscosity. We found that to have a substantial amount of wave energy dissipated at the lower corona, one needs to increase shear viscosity by seven orders of magnitude in comparison with the value given by the classical plasma theory. An important result that we obtained is that the efficiency of the wave damping strongly depends on the density variation with the height. The stronger the density decrease, the weaker the wave damping is. On the basis of this result, we suggested a physical explanation of the phenomenon of the enhanced wave damping in equilibrium configurations with exponentially diverging magnetic field lines.

Achromatic illumination system for small targets

DOEpatents

Sigler, Robert D.

1979-01-01

A pair of light beams is directed to provide illumination that is substantially uniform from all directions on a small target by a system comprising a pair of corrector windows, a pair of planar reflecting surfaces, a pair of paraboloidal mirrors and a reflecting mirror cavity. The components are arranged so that each of the beams passes through a corrector and is reflected from the planar surface to the paraboloidal mirror, from which it is focused through a hole in the planar surface to the interior of the cavity. The surface of the interior portion of the cavity is shaped to reflect the focused beam three times before the focused reflected beam strikes the target.

Multiscale 3D Shape Analysis using Spherical Wavelets

PubMed Central

Nain, Delphine; Haker, Steven; Bobick, Aaron; Tannenbaum, Allen

2013-01-01

Shape priors attempt to represent biological variations within a population. When variations are global, Principal Component Analysis (PCA) can be used to learn major modes of variation, even from a limited training set. However, when significant local variations exist, PCA typically cannot represent such variations from a small training set. To address this issue, we present a novel algorithm that learns shape variations from data at multiple scales and locations using spherical wavelets and spectral graph partitioning. Our results show that when the training set is small, our algorithm significantly improves the approximation of shapes in a testing set over PCA, which tends to oversmooth data. PMID:16685992

Multiscale 3D shape analysis using spherical wavelets.

PubMed

Nain, Delphine; Haker, Steven; Bobick, Aaron; Tannenbaum, Allen R

2005-01-01

Shape priors attempt to represent biological variations within a population. When variations are global, Principal Component Analysis (PCA) can be used to learn major modes of variation, even from a limited training set. However, when significant local variations exist, PCA typically cannot represent such variations from a small training set. To address this issue, we present a novel algorithm that learns shape variations from data at multiple scales and locations using spherical wavelets and spectral graph partitioning. Our results show that when the training set is small, our algorithm significantly improves the approximation of shapes in a testing set over PCA, which tends to oversmooth data.

A field study of the hemispherical directional reflectance factor and spectral albedo of dry snow

NASA Astrophysics Data System (ADS)

Bourgeois, C. S.; Calanca, P.; Ohmura, A.

2006-10-01

Hemispherical directional reflectance factors (HDRF) were collected under solar zenith angles from 49° to 85°. The experimental site was the Greenland Summit Environmental Observatory (72°35'N, 34°30'W, 3203 m above sea level) where both the snow and the atmosphere are very clean. The observations were carried out for two prevailing snow surface types: a smooth surface with wind-broken small snow grains and a surface covered with rime causing a higher surface roughness. A specially designed Gonio-Spectrometer (wavelength range 350-1050 nm), was developed at the Institute for Atmospheric and Climate Science and used to collect spectral HDRFs over the hemisphere. The angular step size was 15° in zenith and azimuth. The HDRFs showed strong variations ranging from 0.6 to 13, depending on the solar zenith angle. The HDRF distribution was nearly isotropic at noon. It varied with increasing solar zenith angle, resulting in a strong forward scattering peak. Smooth surfaces exhibited stronger forward scattering than surfaces covered with rime. At a solar zenith of 85°, an HDRF of ˜13 was observed in the forward scattering direction for λ=900 nm. Spectral albedos were calculated by interpolating the HDRF data sets on a 2° grid and integrating individual wavelengths. Spectral albedos showed variations depending on the solar illumination geometry and the snow surface properties. Broadband albedos were calculated by integration of the spectral albedos over all wavelengths. The broadband albedos derived from directional measurements reproduced the diurnal pattern measured with two back-to-back broadband pyranometers.

Behaviour of mobile macrofauna is a key factor in beach ecology as response to rapid environmental changes

NASA Astrophysics Data System (ADS)

Scapini, Felicita

2014-10-01

Sandy beach animals show behavioural adaptations that are expressed as contingencies during the life history of individuals to face periodic and episodic environmental changes. Such adaptations include activity rhythms, orientation, zonation, burrowing, escape responses and feeding strategies, the first two being common adaptations to all mobile animals. The complex conditions of a particular beach environment may be integrated in a learning process enhancing the adaptation and survival of individuals and eventually of populations. Evidence exists of genetic determination of some behavioural features that are adaptive in the long term (throughout generations) by increasing individual survival and reproductive potential. The environmental features integrated with the life history of beach animals shape the individual behaviour through ontogenetic processes, as well as population behaviour through evolutionary processes. Thus, behavioural differences among individuals may reflect environmental variation at the local and small/medium temporal scales of beach processes, whereas within-population behavioural coherence and differences among populations may reflect variation at the geographic scale. The different foci stressed by different authors and the variety of evidence dependent upon local geographical and ecological conditions have often resulted in compartmentalised explanations, making generalizations and the repeatability of behavioural studies of beach ecology challenging. There was a need to developing a more synthetic paradigm for beach animal behaviour. This paper gives a brief overview of the theoretical background and keystone studies, which have contributed to our understanding of animal behaviour in sandy beach ecology, and proposes testable hypotheses to be integrated in the beach ecology paradigm.

Earth Observations taken by the Expedition 16 Crew

NASA Image and Video Library

2008-01-11

ISS016-E-022772 (11 Jan. 2008) --- Perth, Australia is featured in this image photographed by an Expedition 16 crewmember on the International Space Station (ISS). Perth is the capital of the state of Western Australia, and the largest city of the southwestern continent of Australia with an estimated population of over 1.5 million (December 2006). The downtown area of Perth and the surrounding suburbs are located on flood plain deposits of the Swan and Canning Rivers that flow through the center of the metropolitan area. Perth enjoys a Mediterranean climate, where the summers are hot and dry and winters are cool and moist. Wildfires can develop during the summer months; several large fires threatened the eastern portion of the metropolitan area in 2005. This view captures variations in urban land cover in the visible wavelengths to which the human eye is sensitive (visible red, green, and blue). The downtown center of Perth at left is characterized by large buildings (such as skyscrapers) with white reflective rooftops. Suburbs to the south (across the Swan River) are characterized by higher density of small buildings with predominantly reddish-purple roofs. Several areas of green vegetation are visible in the image. Parks and golf courses comprised mainly of grass present an even green coloration, while the dense tree canopy of Kings Park appears dark green. Variations in the coloration of the Swan and Canning Rivers is due to sunglint, or light reflected off the water surface back to the observer (in this case, a crewmember onboard the ISS).

Variation in migratory behavior influences regional genetic diversity and structure among American kestrel populations (Falco sparverius) in North America

USGS Publications Warehouse

Miller, Mark P.; Mullins, Thomas D.; Parrish, John G.; Walters, Jeffrey R.; Haig, Susan M.

2012-01-01

Birds employ numerous strategies to cope with seasonal fluctuations in high-quality habitat availability. Long distance migration is a common tactic; however, partial migration is especially common among broadly distributed species. Under partial migration systems, a portion of a species migrates, whereas the remainder inhabits breeding grounds year round. In this study, we identified effects of migratory behavior variation on genetic structure and diversity of American Kestrels (Falco sparverius), a widespread partial migrant in North America. American Kestrels generally migrate; however, a resident group inhabits the southeastern United States year round. The southeastern group is designated as a separate subspecies (F. s. paulus) from the migratory group (F. s. sparverius). Using mitochondrial DNA and microsatellites from 183 and 211 individuals, respectively, we illustrate that genetic structure is stronger among nonmigratory populations, with differentiation measures ranging from 0.060 to 0.189 depending on genetic marker and analysis approach. In contrast, measures from western North American populations ranged from 0 to 0.032. These findings suggest that seasonal migratory behavior is also associated with natal and breeding dispersal tendencies. We likewise detected significantly lower genetic diversity within nonmigratory populations, reflecting the greater influence of genetic drift in small populations. We identified the signal of population expansion among nonmigratory populations, consistent with the recent establishment of higher latitude breeding locations following Pleistocene glacial retreat. Differentiation of F. s. paulus and F. s. sparverius reflected subtle differences in allele frequencies. Because migratory behavior can evolve quickly, our analyses suggest recent origins of migratory American Kestrel populations in North America.

Extended Malus Law with metallic linear polarizers in terahertz and microwave domains

NASA Astrophysics Data System (ADS)

Romain, Xavier; Baida, Fadi; Boyer, Philippe

2016-04-01

An extended Malus' Law for the well-known Polarizer-Analyzer Mounting (PAM) is analytically obtained and investigated. The PAM is composed of two perfectly parallel Metallic Linear Polarizers (MLP), with subwavelength periodic pattern composed of rectangular holes. Our analytical theory especially highlights the influence of multiple reflections between the two MLPs which leads to an extended and tunable Malus Law. We demonstrate that the classical Malus Law (obtained for dichroic polarizers) is modulated by a factor which also depends on the angular difference between both MLP axes. In our analysis, the Malus' law is studied at the resonance wavelengths. Due to the interactions between the two MLP, the modulation factor is tuned by the optical distance between them which makes substantial variations of the Malus Law. We mention that, for each reflections, the light is re-polarized according to the orientation of the MLP. This tunable Malus' Law provides an original tool for ultrasensitive detection in the terahertz or microwave regime. For example, one can use an ultra-narrow angle Malus' Law as a hyper-sensitive device to analyze with a high accuracy the electro-optical response of a material sandwiched between polarizer and analyzer. We theoretically propose one PAM designed to detect a refractive index variation as small as 10-5. Finally, we extend the theory, which takes the form of an extended Jones formalism, to a large number of stacked MLP. It is applied to achieve many polarization manipulation processes as total polarization conversion with tunable spectral bandwidth, for instance.

Insights into shallow magmatic processes at Kīlauea Volcano, Hawaíi, from a multiyear continuous gravity time series

NASA Astrophysics Data System (ADS)

Poland, Michael P.; Carbone, Daniele

2016-07-01

Continuous gravity data collected near the summit eruptive vent at Kīlauea Volcano, Hawaíi, during 2011-2015 show a strong correlation with summit-area surface deformation and the level of the lava lake within the vent over periods of days to weeks, suggesting that changes in gravity reflect variations in volcanic activity. Joint analysis of gravity and lava level time series data indicates that over the entire time period studied, the average density of the lava within the upper tens to hundreds of meters of the summit eruptive vent remained low—approximately 1000-1500 kg/m3. The ratio of gravity change (adjusted for Earth tides and instrumental drift) to lava level change measured over 15 day windows rose gradually over the course of 2011-2015, probably reflecting either (1) a small increase in the density of lava within the eruptive vent or (2) an increase in the volume of lava within the vent due to gradual vent enlargement. Superimposed on the overall time series were transient spikes of mass change associated with inflation and deflation of Kīlauea's summit and coincident changes in lava level. The unexpectedly strong mass variations during these episodes suggest magma flux to and from the shallow magmatic system without commensurate deformation, perhaps indicating magma accumulation within, and withdrawal from, void space—a process that might not otherwise be apparent from lava level and deformation data alone. Continuous gravity data thus provide unique insights into magmatic processes, arguing for continued application of the method at other frequently active volcanoes.

Analysis of the Radiometric Response of Orange Tree Crown in Hyperspectral Uav Images

NASA Astrophysics Data System (ADS)

Imai, N. N.; Moriya, E. A. S.; Honkavaara, E.; Miyoshi, G. T.; de Moraes, M. V. A.; Tommaselli, A. M. G.; Näsi, R.

2017-10-01

High spatial resolution remote sensing images acquired by drones are highly relevant data source in many applications. However, strong variations of radiometric values are difficult to correct in hyperspectral images. Honkavaara et al. (2013) presented a radiometric block adjustment method in which hyperspectral images taken from remotely piloted aerial systems - RPAS were processed both geometrically and radiometrically to produce a georeferenced mosaic in which the standard Reflectance Factor for the nadir is represented. The plants crowns in permanent cultivation show complex variations since the density of shadows and the irradiance of the surface vary due to the geometry of illumination and the geometry of the arrangement of branches and leaves. An evaluation of the radiometric quality of the mosaic of an orange plantation produced using images captured by a hyperspectral imager based on a tunable Fabry-Pérot interferometer and applying the radiometric block adjustment method, was performed. A high-resolution UAV based hyperspectral survey was carried out in an orange-producing farm located in Santa Cruz do Rio Pardo, state of São Paulo, Brazil. A set of 25 narrow spectral bands with 2.5 cm of GSD images were acquired. Trend analysis was applied to the values of a sample of transects extracted from plants appearing in the mosaic. The results of these trend analysis on the pixels distributed along transects on orange tree crown showed the reflectance factor presented a slightly trend, but the coefficients of the polynomials are very small, so the quality of mosaic is good enough for many applications.

Cenozoic global sea level, sequences, and the New Jersey transect: Results from coastal plain and continental slope drilling

USGS Publications Warehouse

Miller, K.G.; Mountain, Gregory S.; Browning, J.V.; Kominz, M.; Sugarman, P.J.; Christie-Blick, N.; Katz, M.E.; Wright, J.D.

1998-01-01

The New Jersey Sea Level Transect was designed to evaluate the relationships among global sea level (eustatic) change, unconformity-bounded sequences, and variations in subsidence, sediment supply, and climate on a passive continental margin. By sampling and dating Cenozoic strata from coastal plain and continental slope locations, we show that sequence boundaries correlate (within ??0.5 myr) regionally (onshore-offshore) and interregionally (New Jersey-Alabama-Bahamas), implicating a global cause. Sequence boundaries correlate with ??18O increases for at least the past 42 myr, consistent with an ice volume (glacioeustatic) control, although a causal relationship is not required because of uncertainties in ages and correlations. Evidence for a causal connection is provided by preliminary Miocene data from slope Site 904 that directly link ??18O increases with sequence boundaries. We conclude that variation in the size of ice sheets has been a primary control on the formation of sequence boundaries since ~42 Ma. We speculate that prior to this, the growth and decay of small ice sheets caused small-amplitude sea level changes (<20 m) in this supposedly ice-free world because Eocene sequence boundaries also appear to correlate with minor ??18O increases. Subsidence estimates (backstripping) indicate amplitudes of short-term (million-year scale) lowerings that are consistent with estimates derived from ??18O studies (25-50 m in the Oligocene-middle Miocene and 10-20 m in the Eocene) and a long-term lowering of 150-200 m over the past 65 myr, consistent with estimates derived from volume changes on mid-ocean ridges. Although our results are consistent with the general number and timing of Paleocene to middle Miocene sequences published by workers at Exxon Production Research Company, our estimates of sea level amplitudes are substantially lower than theirs. Lithofacies patterns within sequences follow repetitive, predictable patterns: (1) coastal plain sequences consist of basal transgressive sands overlain by regressive highstand silts and quartz sands; and (2) although slope lithofacies variations are subdued, reworked sediments constitute lowstand deposits, causing the strongest, most extensive seismic reflections. Despite a primary eustatic control on sequence boundaries, New Jersey sequences were also influenced by changes in tectonics, sediment supply, and climate. During the early to middle Eocene, low siliciclastic and high pelagic input associated with warm climates resulted in widespread carbonate deposition and thin sequences. Late middle Eocene and earliest Oligocene cooling events curtailed carbonate deposition in the coastal plain and slope, respectively, resulting in a switch to siliciclastic sedimentation. In onshore areas, Oligocene sequences are thin owing to low siliciclastic and pelagic input, and their distribution is patchy, reflecting migration or progradation of depocenters; in contrast, Miocene onshore sequences are thicker, reflecting increased sediment supply, and they are more complete downdip owing to simple tectonics. We conclude that the New Jersey margin provides a natural laboratory for unraveling complex interactions of eustasy, tectonics, changes in sediment supply, and climate change.

Normal Perceptual Sensitivity Arising From Weakly Reflective Cone Photoreceptors

PubMed Central

Bruce, Kady S.; Harmening, Wolf M.; Langston, Bradley R.; Tuten, William S.; Roorda, Austin; Sincich, Lawrence C.

2015-01-01

Purpose To determine the light sensitivity of poorly reflective cones observed in retinas of normal subjects, and to establish a relationship between cone reflectivity and perceptual threshold. Methods Five subjects (four male, one female) with normal vision were imaged longitudinally (7–26 imaging sessions, representing 82–896 days) using adaptive optics scanning laser ophthalmoscopy (AOSLO) to monitor cone reflectance. Ten cones with unusually low reflectivity, as well as 10 normally reflective cones serving as controls, were targeted for perceptual testing. Cone-sized stimuli were delivered to the targeted cones and luminance increment thresholds were quantified. Thresholds were measured three to five times per session for each cone in the 10 pairs, all located 2.2 to 3.3° from the center of gaze. Results Compared with other cones in the same retinal area, three of 10 monitored dark cones were persistently poorly reflective, while seven occasionally manifested normal reflectance. Tested psychophysically, all 10 dark cones had thresholds comparable with those from normally reflecting cones measured concurrently (P = 0.49). The variation observed in dark cone thresholds also matched the wide variation seen in a large population (n = 56 cone pairs, six subjects) of normal cones; in the latter, no correlation was found between cone reflectivity and threshold (P = 0.0502). Conclusions Low cone reflectance cannot be used as a reliable indicator of cone sensitivity to light in normal retinas. To improve assessment of early retinal pathology, other diagnostic criteria should be employed along with imaging and cone-based microperimetry. PMID:26193919

How Can Polarization States of Reflected Light from Snow Surfaces Inform Us on Surface Normals and Ultimately Snow Grain Size Measurements?

NASA Astrophysics Data System (ADS)

Schneider, A. M.; Flanner, M.; Yang, P.; Yi, B.; Huang, X.; Feldman, D.

2016-12-01

The Snow Grain Size and Pollution (SGSP) algorithm is a method applied to Moderate Resolution Imaging Spectroradiometer data to estimate snow grain size from space-borne measurements. Previous studies validate and quantify potential sources of error in this method, but because it assumes flat snow surfaces, however, large scale variations in surface normals can cause biases in its estimates due to its dependence on solar and observation zenith angles. To address these variations, we apply the Monte Carlo method for photon transport using data containing the single scattering properties of different ice crystals to calculate polarization states of reflected monochromatic light at 1500nm from modeled snow surfaces. We evaluate the dependence of these polarization states on solar and observation geometry at 1500nm because multiple scattering is generally a mechanism for depolarization and the ice crystals are relatively absorptive at this wavelength. Using 1500nm thus results in a higher number of reflected photons undergoing fewer scattering events, increasing the likelihood of reflected light having higher degrees of polarization. In evaluating the validity of the model, we find agreement with previous studies pertaining to near-infrared spectral directional hemispherical reflectance (i.e. black-sky albedo) and similarities in measured bidirectional reflectance factors, but few studies exist modeling polarization states of reflected light from snow surfaces. Here, we present novel results pertaining to calculated polarization states and compare dependences on solar and observation geometry for different idealized snow surfaces. If these dependencies are consistent across different ice particle shapes and sizes, then these findings could inform the SGSP algorithm by providing useful relationships between measurable physical quantities and solar and observation geometry to better understand variations in snow surface normals from remote sensing observations.

Smearing of mass accretion rate variation by viscous processes in accretion disks in compact binary systems

NASA Astrophysics Data System (ADS)

Ghosh, A.; Chakrabarti, Sandip K.

2016-09-01

Variation of mass supply rate from the companion can be smeared out by viscous processes inside an accretion disk. Hence, by the time the flow reaches the inner edge, the variation in X-rays need not reflect the true variation of the mass supply rate at the outer edge. However, if the viscosity fluctuates around a mean value, one would expect the viscous time scale t_{{visc}} also to spread around a mean value. In high mass X-ray binaries, which are thought to be primarily wind-fed, the size of the viscous Keplerian disk is smaller and thus such a spread could be lower as compared to the low mass X-ray binaries which are primarily fed by Roche lobe overflow. If there is an increasing or decreasing trend in viscosity, the interval between enhanced emission would be modified systematically. In the absence of a detailed knowledge about the variation of mass supply rates at the outer edge, we study ideal circumstances where modulation must take place exactly in orbital time scales, such as when there is an ellipticity in the orbit. We study a few compact binaries using long term All Sky monitor (ASM) data (1.5-12 keV) of Rossi X-ray Timing Explorer (RXTE) and all sky survey data (15-50 keV) of Swift satellites by different methods to look for such smearing effects and to infer what these results can tell us about the viscous processes inside the respective disks. We employ three different methods to seek imprints of periodicity on the X-ray variation and found that in all the cases, the location of the peak in the power density spectra is consistent with the orbital frequencies. Interestingly, in high mass X-ray binaries the peaks are sharp with high rms values, consistent with a small Keplerian disk in a wind fed system. However, in low mass X-ray binaries with larger Keplerian disk component, the peaks are spreaded out with much lower rms values. X-ray reflections, or superhump phenomena which may also cause such X-ray modulations would not be affected by the size of the Keplerian disk component. Our result thus confirms different sizes of Keplerian disks in these two important classes of binaries. If the orbital periods of any binary system is not known, they may be obtained with reasonable accuracy for HMXBs and with lesser accuracy for LMXBs by our method.

Homodyne chiral polarimetry for measuring thermo-optic refractive index variations.

PubMed

Twu, Ruey-Ching; Wang, Jhao-Sheng

2015-10-10

Novel reflection-type homodyne chiral polarimetry is proposed for measuring the refractive index variations of a transparent plate under thermal impact. The experimental results show it is a simple and useful method for providing accurate measurements of refractive index variations. The measurement can reach a resolution of 7×10^-5.

A highly aggregated geographical distribution of forest pest invasions in the USA

Treesearch

Andrew M. Liebhold; Deborah G. McCullough; Laura M. Blackburn; Susan J. Frankel; Betsy Von Holle; Juliann E. Aukema

2013-01-01

Geographical variation in numbers of established non-native species provides clues to the underlying processes driving biological invasions. Specifically, this variation reflects landscape characteristics that drive non-native species arrival, establishment and spread. Here, we investigate spatial variation in damaging non-native forest insect and pathogen species to...

Environmental Processes and Spectral Reflectance Characteristics Associated with Soil Erosion in Desert Fringe Regions

NASA Technical Reports Server (NTRS)

Jacobberger, P. A.

1987-01-01

Results of analysis of spectral variation of sand dunes in El Ghorabi, Bahariya, Egypt; Tombouctou/Azaouad, Mali; and Tsodilo Hills, western Botswana are presented. Seasonal variations in dune extent and location of dune crests and their relationship to such factors as wind and weather variations are emphasized.

Gravity Wave Dynamics in a Mesospheric Inversion Layer: 1. Reflection, Trapping, and Instability Dynamics

PubMed Central

Laughman, Brian; Wang, Ling; Lund, Thomas S.; Collins, Richard L.

2018-01-01

Abstract An anelastic numerical model is employed to explore the dynamics of gravity waves (GWs) encountering a mesosphere inversion layer (MIL) having a moderate static stability enhancement and a layer of weaker static stability above. Instabilities occur within the MIL when the GW amplitude approaches that required for GW breaking due to compression of the vertical wavelength accompanying the increasing static stability. Thus, MILs can cause large‐amplitude GWs to yield instabilities and turbulence below the altitude where they would otherwise arise. Smaller‐amplitude GWs encountering a MIL do not lead to instability and turbulence but do exhibit partial reflection and transmission, and the transmission is a smaller fraction of the incident GW when instabilities and turbulence arise within the MIL. Additionally, greater GW transmission occurs for weaker MILs and for GWs having larger vertical wavelengths relative to the MIL depth and for lower GW intrinsic frequencies. These results imply similar dynamics for inversions due to other sources, including the tropopause inversion layer, the high stability capping the polar summer mesopause, and lower frequency GWs or tides having sufficient amplitudes to yield significant variations in stability at large and small vertical scales. MILs also imply much stronger reflections and less coherent GW propagation in environments having significant fine structure in the stability and velocity fields than in environments that are smoothly varying. PMID:29576994

Optical pen-size reflectometer for monitoring of early dental erosion in native and polished enamels.

PubMed

Rakhmatullina, Ekaterina; Bossen, Anke; Bachofner, Kai K; Meier, Christoph; Lussi, Adrian

2013-11-01

Application of the specular reflection intensity was previously reported for the quantification of early dental erosion. Further development of the technique and assembly of the miniaturized pen-size instrument are described. The optical system was adjusted to fit into a handy device which could potentially access different positions in the oral cavity. The assembled instrument could successfully detect early erosion progression in both polished (n=70) and native (n=20) human enamels. Different severities of enamel erosion were induced by varying incubation time of polished enamel in 1% citric acid (pH=3.60, 0.5 to 10 min), while the native incisors were treated in the commercial orange juice (Tropicana Pure Premium®, pH=3.85, 10 to 60 min). The instrument provided a good differentiation between various severities of the erosion in vitro. The size of the measurement spot affected the erosion monitoring in native enamel (human incisors). The erosion measurement in the 0.7-mm (diameter) cervical spots showed systematically lower reflection intensities compared with the analysis of central and incisal small spots. The application of larger spot areas (2.3 mm) for the erosion monitoring revealed no effect (p>0.05) of the spot position on the reflection signal. High variation of the teeth susceptibility toward in vitro erosion was detected in native enamel.

Gravity Wave Dynamics in a Mesospheric Inversion Layer: 1. Reflection, Trapping, and Instability Dynamics

NASA Astrophysics Data System (ADS)

Fritts, David C.; Laughman, Brian; Wang, Ling; Lund, Thomas S.; Collins, Richard L.

2018-01-01

An anelastic numerical model is employed to explore the dynamics of gravity waves (GWs) encountering a mesosphere inversion layer (MIL) having a moderate static stability enhancement and a layer of weaker static stability above. Instabilities occur within the MIL when the GW amplitude approaches that required for GW breaking due to compression of the vertical wavelength accompanying the increasing static stability. Thus, MILs can cause large-amplitude GWs to yield instabilities and turbulence below the altitude where they would otherwise arise. Smaller-amplitude GWs encountering a MIL do not lead to instability and turbulence but do exhibit partial reflection and transmission, and the transmission is a smaller fraction of the incident GW when instabilities and turbulence arise within the MIL. Additionally, greater GW transmission occurs for weaker MILs and for GWs having larger vertical wavelengths relative to the MIL depth and for lower GW intrinsic frequencies. These results imply similar dynamics for inversions due to other sources, including the tropopause inversion layer, the high stability capping the polar summer mesopause, and lower frequency GWs or tides having sufficient amplitudes to yield significant variations in stability at large and small vertical scales. MILs also imply much stronger reflections and less coherent GW propagation in environments having significant fine structure in the stability and velocity fields than in environments that are smoothly varying.

New Method for Solving Inductive Electric Fields in the Ionosphere

NASA Astrophysics Data System (ADS)

Vanhamäki, H.

2005-12-01

We present a new method for calculating inductive electric fields in the ionosphere. It is well established that on large scales the ionospheric electric field is a potential field. This is understandable, since the temporal variations of large scale current systems are generally quite slow, in the timescales of several minutes, so inductive effects should be small. However, studies of Alfven wave reflection have indicated that in some situations inductive phenomena could well play a significant role in the reflection process, and thus modify the nature of ionosphere-magnetosphere coupling. The input to our calculation method are the time series of the potential part of the ionospheric electric field together with the Hall and Pedersen conductances. The output is the time series of the induced rotational part of the ionospheric electric field. The calculation method works in the time-domain and can be used with non-uniform, time-dependent conductances. In addition no particular symmetry requirements are imposed on the input potential electric field. The presented method makes use of special non-local vector basis functions called Cartesian Elementary Current Systems (CECS). This vector basis offers a convenient way of representing curl-free and divergence-free parts of 2-dimensional vector fields and makes it possible to solve the induction problem using simple linear algebra. The new calculation method is validated by comparing it with previously published results for Alfven wave reflection from uniformly conducting ionosphere.

Small regulatory RNA-induced growth rate heterogeneity of Bacillus subtilis.

PubMed

Mars, Ruben A T; Nicolas, Pierre; Ciccolini, Mariano; Reilman, Ewoud; Reder, Alexander; Schaffer, Marc; Mäder, Ulrike; Völker, Uwe; van Dijl, Jan Maarten; Denham, Emma L

2015-03-01

Isogenic bacterial populations can consist of cells displaying heterogeneous physiological traits. Small regulatory RNAs (sRNAs) could affect this heterogeneity since they act by fine-tuning mRNA or protein levels to coordinate the appropriate cellular behavior. Here we show that the sRNA RnaC/S1022 from the Gram-positive bacterium Bacillus subtilis can suppress exponential growth by modulation of the transcriptional regulator AbrB. Specifically, the post-transcriptional abrB-RnaC/S1022 interaction allows B. subtilis to increase the cell-to-cell variation in AbrB protein levels, despite strong negative autoregulation of the abrB promoter. This behavior is consistent with existing mathematical models of sRNA action, thus suggesting that induction of protein expression noise could be a new general aspect of sRNA regulation. Importantly, we show that the sRNA-induced diversity in AbrB levels generates heterogeneity in growth rates during the exponential growth phase. Based on these findings, we hypothesize that the resulting subpopulations of fast- and slow-growing B. subtilis cells reflect a bet-hedging strategy for enhanced survival of unfavorable conditions.

Influence of Tree Species Composition and Community Structure on Carbon Density in a Subtropical Forest

PubMed Central

Hu, Yanqiu; Su, Zhiyao; Li, Wenbin; Li, Jingpeng; Ke, Xiandong

2015-01-01

We assessed the impact of species composition and stand structure on the spatial variation of forest carbon density using data collected from a 4-ha plot in a subtropical forest in southern China. We found that 1) forest biomass carbon density significantly differed among communities, reflecting a significant effect of community structure and species composition on carbon accumulation; 2) soil organic carbon density increased whereas stand biomass carbon density decreased across communities, indicating that different mechanisms might account for the accumulation of stand biomass carbon and soil organic carbon in the subtropical forest; and 3) a small number of tree individuals of the medium- and large-diameter class contributed predominantly to biomass carbon accumulation in the community, whereas a large number of seedlings and saplings were responsible for a small proportion of the total forest carbon stock. These findings demonstrate that both biomass carbon and soil carbon density in the subtropical forest are sensitive to species composition and community structure, and that heterogeneity in species composition and stand structure should be taken into account to ensure accurate forest carbon accounting. PMID:26317523

Influence of Tree Species Composition and Community Structure on Carbon Density in a Subtropical Forest.

PubMed

Hu, Yanqiu; Su, Zhiyao; Li, Wenbin; Li, Jingpeng; Ke, Xiandong

2015-01-01

We assessed the impact of species composition and stand structure on the spatial variation of forest carbon density using data collected from a 4-ha plot in a subtropical forest in southern China. We found that 1) forest biomass carbon density significantly differed among communities, reflecting a significant effect of community structure and species composition on carbon accumulation; 2) soil organic carbon density increased whereas stand biomass carbon density decreased across communities, indicating that different mechanisms might account for the accumulation of stand biomass carbon and soil organic carbon in the subtropical forest; and 3) a small number of tree individuals of the medium- and large-diameter class contributed predominantly to biomass carbon accumulation in the community, whereas a large number of seedlings and saplings were responsible for a small proportion of the total forest carbon stock. These findings demonstrate that both biomass carbon and soil carbon density in the subtropical forest are sensitive to species composition and community structure, and that heterogeneity in species composition and stand structure should be taken into account to ensure accurate forest carbon accounting.

Leaf reflectance-nitrogen-chlorophyll relations among three south Texas woody rangeland plant species

NASA Technical Reports Server (NTRS)

Gausman, H. W.; Everitt, J. H.; Escobar, D. E. (Principal Investigator)

1982-01-01

Annual variations in the nitrogen-chlorophyll leaf reflectance of hackberry, honey mesquite and live oak in south Texas, were compared. In spring, leaf reflectance at the 0.55 m wavelength and nitrogen (N) concentration was high but leaf chlorophyll (chl) concentrations were low. In summer, leaf reflectance and N-concentration were low but lead chl concentrations were high. Linear correlations for both spring and summer of leaf reflectance with N and chl concentration or deviations from linear regression were not statistically significant.

Postglacial diatom-climate responses in a small lake in the Pacific Northwest of North America

NASA Astrophysics Data System (ADS)

Egan, J.; Allott, T. E.; Fletcher, W.

2017-12-01

Understanding the variability of ocean-atmosphere interactions in the Pacific Northwest (PNW) of North America is essential for climate forecasting, particularly variations in the El Niño-Southern Oscillation (ENSO) and Pacific Decadal Oscillation (PDO). Research suggests that global warming is increasing the frequency of extreme El Niño events, which can have global climatic impacts (e.g. disrupting global weather patterns, affecting ecosystems and agriculture and extreme weather events (flood, drought, bushfires)). A diatom record spanning 14,500 Cal yr BP from Moss Lake, Washington is used to assess Holocene climate change in the PNW including evidence for periodicities related to ocean-atmosphere interactions and/or variations in solar output, and is directly compared to the Moss Lake pollen record. Three climate phases were identified: 1) the Late Pleistocene (until 11,800 Cal yr BP), with a cold climate evidenced by the low abundance of diatoms; 2) the early to mid-Holocene (11,800 - 7500 Cal yr BP), with warm climate, longer growing seasons and shorter periods of ice cover, indicated by the increase of Cyclotella pseudostelligera and decrease of Fragilaria taxa; and 3) the mid-to-late Holocene from 7500 Cal yr BP onwards, with a cooler climate reflected by a decrease in Cyclotella pseudostelligera and an increase in Fragilaria taxa. These climate shifts correlate with the regional and local pollen record. Fluctuations in Cyclotella pseudostelligera and Aulacoseira taxa suggest climatic cycles of varying amplitude throughout. RedFit and Wavelet analyses revealed periodicities of approximately 2000, 1300, and 450 yrs. The 2000 yr cycle is attributed to solar variation; the Hallstatt Oscillation. The 1300 yr and 450 yr cycles are attributed to ENSO and PDO like cycles. The 1300 periodicity is evident throughout the Late Pleistocene and Holocene and reflects shifts from El Niño/positive PDO (weak wind intensity, warm temperature) to La Niña/Negative PDO (high wind intensity, cool temperature). Between 11,800 and 7500 Cal yr BP the cycle amplitudes are reduced and frequency increased reflecting the 450 yr periodicity. Diatom data from Moss Lake provide a sensitive record of climate-related limnological responses and refine our understanding of Holocene climate change in the PNW.

Towards a more comprehensive usage of reflection seismic in near-surface characterization

NASA Astrophysics Data System (ADS)

Blouin, M.; Gloaguen, E.; Bellefleur, G.; Pugin, A.

2014-12-01

For more than a decade, research groups such as the Geological Survey of Canada built the interest for near-surface reflection seismic by proposing small vibrating sources and three components (3C) landstreamers. Developments in the instrumentation combined with extensive use of shear-wave profiling to image stratigraphy of unconsolidated environments at high resolution got this geophysical method more versatile, more accurate, increased cost effectiveness and allowed to cover greater distance per day. With those major upgrades as a starting point and in a context of regional aquifer characterization in St-Lawrence Lowlands in the province of Quebec, Canada, the present study propose a workflow to further enhance reflection seismic usage for near-surface characterization. First, as high resolution near surface surveys require small shot intervals and multiple channels on three axis, a lot of the acquisition information is received under a raw form yielding to unproductive quality control (QC). Hence, a tool was developed to process data "on the fly" and allow adequate real-time QC and on-site decision making. The algorithm was constructed in a Python environment and is accessible through a graphical user interface where the user is prompted for geometry parameters inputs and desired processing flow steps. Second, at the scale of seismic wavelengths, fine grain and poorly consolidated sediments such as marine clay of the St-Lawrence Lowlands can be viewed as a homogeneous medium presenting anisotropy. This section of the study showed that such geological settings yield to significant seismic velocity variations with angle of propagation that should not be ignore for normal move-out correction, migration or time to depth conversion. Finally, accurate delineation of stratigraphic horizons is an important task of any environmental or hydrogeological characterization study. A methodology was put forward to help integrate geophysical measurements with geological knowledge in the construction of stratigraphic maps. The approach accounts for reliability and resolution of the measurements, extracts statistical information from reflection seismic interpretations and can further serve as a tool for reinterpretation of the seismic data.

Long-term ground penetrating radar monitoring of a small volume DNAPL release in a natural groundwater flow field.

PubMed

Hwang, Yong Keun; Endres, Anthony L; Piggott, Scott D; Parker, Beth L

2008-04-04

An earlier field experiment at Canadian Forces Base Borden by Brewster and Annan [Geophysics 59 (1994) 1211] clearly demonstrated the capability of ground penetrating radar (GPR) reflection profiling to detect and monitor the formation of DNAPL layers in the subsurface. Their experiment involved a large volume release (770 L) of tetrachloroethylene into a portion of the sand aquifer that was hydraulically isolated from groundwater flow by sheet pile walls. In this study, we evaluated the ability of GPR profiling to detect and monitor much smaller volume releases (50 L). No subsurface confining structure was used in this experiment; hence, the DNAPL impacted zone was subjected to the natural groundwater flow regime. This condition allowed us to geophysically monitor the DNAPL mass loss over a 66 month period. Reflectivity variations on the GPR profiles were used to infer the presence and evolution of the solvent layers. GPR imaging found significant reflectivity increases due to solvent layer formation during the two week period immediately after the release. These results demonstrated the capacity of GPR profiling for the detection and monitoring of lesser volume DNAPL releases that are more representative of small-scale industrial spills. The GPR imaged solvent layers subsequently reduced in both areal extent and reflectivity after 29 months and almost completely disappeared by the end of the 66 month monitoring period. Total DNAPL mass estimates based on GPR profiling data indicated that the solvent mass was reduced to 34%-36% of its maximum value after 29 months; only 4%-9% of the solvent mass remained in the study area after 66 months. These results are consistent with independent hydrogeological estimates of remaining DNAPL mass based on the downgradient monitoring of the dissolved solvent phase. Hence, we have concluded that the long-term GPR reflectivity changes of the DNAPL layers are likely the result from the dissolution of chlorinated solvents residing in those layers. The long-term monitoring results demonstrated that GPR profiling is a promising non-invasive method for use at DNAPL contaminated sites in sandy aquifers where temporal information about immiscible contaminant mass depletion due to either natural flow or remediation is needed. However, our results also indicated that the GPR signature of older DNAPL impacted zones may not differ greatly from the uncontaminated background if significant mass reduction due to dissolution has occurred.

Variations in Form and Skill: Supporting Multiple Orientations to Reflective Thinking in Leadership Preparation

ERIC Educational Resources Information Center

Carver, Cynthia L; Klein, C. Suzanne

2016-01-01

Drawing on data collected as part of a qualitative action research study, our analysis examines the reflective thinking skill of candidates as they begin a two-year principal preparation program. As leadership educators, we noticed that our highest performing students were also the most skilled at thinking reflectively. Using candidates' writing…

Martian surface weathering studies

NASA Technical Reports Server (NTRS)

Calvin, M.

1973-01-01

The nature of the Martian surface was characterized by means of its reflectance properties. The Mariner 9 photography was used to establish terrain units which were crossed by the Mariner 6 and 7 paths. The IR reflectance measured by the IR spectrometers on these spacecraft was to be used to indicate the nature of the surface within these units. There is an indication of physical size and/or compositional variation between units but too many natural parameters can vary (size, shape, composition, adsorbed phases, reradiation, atmospheric absorbtion, temperature gradients, etc.) to be certain what effect is causing those variations observed. It is suggested that the characterization could be fruitfully pursued by a group which was dedicated to peeling back the layers of minutia affecting IR reflectance.

Cyclicity in Upper Mississippian Bangor Limestone, Blount County, Alabama

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bronner, R.L.

1988-01-01

The Upper Mississippian (Chesterian) Bangor Limestone in Alabama consists of a thick, complex sequence of carbonate platform deposits. A continuous core through the Bangor on Blount Mountain in north-central Alabama provides the opportunity to analyze the unit for cyclicity and to identify controls on vertical facies sequence. Lithologies from the core represent four general environments of deposition: (1) subwave-base, open marine, (2) shoal, (3) lagoon, and (4) peritidal. Analysis of the vertical sequence of lithologies in the core indicates the presence of eight large-scale cycles dominated by subtidal deposits, but defined on the basis of peritidal caps. These large-scale cyclesmore » can be subdivided into 16 small-scale cycles that may be entirely subtidal but illustrate upward shallowing followed by rapid deepening. Large-scale cycles range from 33 to 136 ft thick, averaging 68 ft; small-scale cycles range from 5 to 80 ft thick and average 34 ft. Small-scale cycles have an average duration of approximately 125,000 years, which is compatible with Milankovitch periodicity. The large-scale cycles have an average duration of approximately 250,000 years, which may simply reflect variations in amplitude of sea level fluctuation or the influence of tectonic subsidence along the southeastern margin of the North American craton.« less

Structural insights into binding of small molecule inhibitors to Enhancer of Zeste Homolog 2

NASA Astrophysics Data System (ADS)

Kalinić, Marko; Zloh, Mire; Erić, Slavica

2014-11-01

Enhancer of Zeste Homolog 2 (EZH2) is a SET domain protein lysine methyltransferase (PKMT) which has recently emerged as a chemically tractable and therapeutically promising epigenetic target, evidenced by the discovery and characterization of potent and highly selective EZH2 inhibitors. However, no experimental structures of the inhibitors co-crystallized to EZH2 have been resolved, and the structural basis for their activity and selectivity remains unknown. Considering the need to minimize cross-reactivity between prospective PKMT inhibitors, much can be learned from understanding the molecular basis for selective inhibition of EZH2. Thus, to elucidate the binding of small-molecule inhibitors to EZH2, we have developed a model of its fully-formed cofactor binding site and used it to carry out molecular dynamics simulations of protein-ligand complexes, followed by molecular mechanics/generalized born surface area calculations. The obtained results are in good agreement with biochemical inhibition data and reflect the structure-activity relationships of known ligands. Our findings suggest that the variable and flexible post-SET domain plays an important role in inhibitor binding, allowing possibly distinct binding modes of inhibitors with only small variations in their structure. Insights from this study present a good basis for design of novel and optimization of existing compounds targeting the cofactor binding site of EZH2.

Normal variation in sagittal spinal alignment parameters in adult patients: an EOS study using serial imaging.

PubMed

Hey, Hwee Weng Dennis; Tan, Kian Loong Melvin; Moorthy, Vikaesh; Lau, Eugene Tze-Chun; Lau, Leok-Lim; Liu, Gabriel; Wong, Hee-Kit

2018-03-01

To describe normal variations in sagittal spinal radiographic parameters over an interval period and establish physiological norms and guidelines for which these images should be interpreted. Data were prospectively collected from a continuous series of adult patients with first-episode mild low back pain presenting to a single institution. The sagittal parameters of two serial radiographic images taken 6-months apart were obtained with the EOS ® slot scanner. Measured parameters include CL, TK, TL, LL, PI, PT, SS, and end and apical vertebrae. Chi-squared test and Wilcoxon Signed Rank test were used to compare categorical and continuous variables, respectively. Sixty patients with a total of 120 whole-body sagittal X-rays were analysed. Mean age was 52.1 years (SD 21.2). Mean interval between the first and second X-rays was 126.2 days (SD 47.2). Small variations (< 1°) occur for all except PT (1.2°), CL (1.2°), and SVA (2.9 cm). Pelvic tilt showed significant difference between two images (p = 0.035). Subgroup analysis based on the time interval between X-rays, and between the first and second X-rays, did not show significant differences. Consistent findings were found for end and apical vertebrae of the thoracic and lumbar spine between the first and second X-rays for sagittal curve shapes. Radiographic sagittal parameters vary between serial images and reflect dynamism in spinal balancing. SVA and PT are predisposed to the widest variation. SVA has the largest variation between individuals of low pelvic tilt. Therefore, interpretation of these parameters should be patient specific and relies on trends rather than a one-time assessment.

Ecosystem variability in the offshore northeastern Chukchi Sea

NASA Astrophysics Data System (ADS)

Blanchard, Arny L.; Day, Robert H.; Gall, Adrian E.; Aerts, Lisanne A. M.; Delarue, Julien; Dobbins, Elizabeth L.; Hopcroft, Russell R.; Questel, Jennifer M.; Weingartner, Thomas J.; Wisdom, Sheyna S.

2017-12-01

Understanding influences of cumulative effects from multiple stressors in marine ecosystems requires an understanding of the sources for and scales of variability. A multidisciplinary ecosystem study in the offshore northeastern Chukchi Sea during 2008-2013 investigated the variability of the study area's two adjacent sub-ecosystems: a pelagic system influenced by interannual and/or seasonal temporal variation at large, oceanographic (regional) scales, and a benthic-associated system more influenced by small-scale spatial variations. Variability in zooplankton communities reflected interannual oceanographic differences in waters advected northward from the Bering Sea, whereas variation in benthic communities was associated with seafloor and bottom-water characteristics. Variations in the planktivorous seabird community were correlated with prey distributions, whereas interaction effects in ANOVA for walruses were related to declines of sea-ice. Long-term shifts in seabird distributions were also related to changes in sea-ice distributions that led to more open water. Although characteristics of the lower trophic-level animals within sub-ecosystems result from oceanographic variations and interactions with seafloor topography, distributions of apex predators were related to sea-ice as a feeding platform (walruses) or to its absence (i.e., open water) for feeding (seabirds). The stability of prey resources appears to be a key factor in mediating predator interactions with other ocean characteristics. Seabirds reliant on highly-variable zooplankton prey show long-term changes as open water increases, whereas walruses taking benthic prey in biomass hotspots respond to sea-ice changes in the short-term. A better understanding of how variability scales up from prey to predators and how prey resource stability (including how critical prey respond to environmental changes over space and time) might be altered by climate and anthropogenic stressors is essential to predicting the future state of both the Chukchi and other arctic systems.

Slope instability caused by small variations in hydraulic conductivity

USGS Publications Warehouse

Reid, M.E.

1997-01-01

Variations in hydraulic conductivity can greatly modify hillslope ground-water flow fields, effective-stress fields, and slope stability. In materials with uniform texture, hydraulic conductivities can vary over one to two orders of magnitude, yet small variations can be difficult to determine. The destabilizing effects caused by small (one order of magnitude or less) hydraulic conductivity variations using ground-water flow modeling, finite-element deformation analysis, and limit-equilibrium analysis are examined here. Low hydraulic conductivity materials that impede downslope ground-water flow can create unstable areas with locally elevated pore-water pressures. The destabilizing effects of small hydraulic heterogeneities can be as great as those induced by typical variations in the frictional strength (approximately 4??-8??) of texturally similar materials. Common "worst-case" assumptions about ground-water flow, such as a completely saturated "hydrostatic" pore-pressure distribution, do not account for locally elevated pore-water pressures and may not provide a conservative slope stability analysis. In site characterization, special attention should be paid to any materials that might impede downslope ground-water flow and create unstable regions.

Cluster size selectivity in the product distribution of ethene dehydrogenation on niobium clusters.

PubMed

Parnis, J Mark; Escobar-Cabrera, Eric; Thompson, Matthew G K; Jacula, J Paul; Lafleur, Rick D; Guevara-García, Alfredo; Martínez, Ana; Rayner, David M

2005-08-18

Ethene reactions with niobium atoms and clusters containing up to 25 constituent atoms have been studied in a fast-flow metal cluster reactor. The clusters react with ethene at about the gas-kinetic collision rate, indicating a barrierless association process as the cluster removal step. Exceptions are Nb8 and Nb10, for which a significantly diminished rate is observed, reflecting some cluster size selectivity. Analysis of the experimental primary product masses indicates dehydrogenation of ethene for all clusters save Nb10, yielding either Nb(n)C2H2 or Nb(n)C2. Over the range Nb-Nb6, the extent of dehydrogenation increases with cluster size, then decreases for larger clusters. For many clusters, secondary and tertiary product masses are also observed, showing varying degrees of dehydrogenation corresponding to net addition of C2H4, C2H2, or C2. With Nb atoms and several small clusters, formal addition of at least six ethene molecules is observed, suggesting a polymerization process may be active. Kinetic analysis of the Nb atom and several Nb(n) cluster reactions with ethene shows that the process is consistent with sequential addition of ethene units at rates corresponding approximately to the gas-kinetic collision frequency for several consecutive reacting ethene molecules. Some variation in the rate of ethene pick up is found, which likely reflects small energy barriers or steric constraints associated with individual mechanistic steps. Density functional calculations of structures of Nb clusters up to Nb(6), and the reaction products Nb(n)C2H2 and Nb(n)C2 (n = 1...6) are presented. Investigation of the thermochemistry for the dehydrogenation of ethene to form molecular hydrogen, for the Nb atom and clusters up to Nb6, demonstrates that the exergonicity of the formation of Nb(n)C2 species increases with cluster size over this range, which supports the proposal that the extent of dehydrogenation is determined primarily by thermodynamic constraints. Analysis of the structural variations present in the cluster species studied shows an increase in C-H bond lengths with cluster size that closely correlates with the increased thermodynamic drive to full dehydrogenation. This correlation strongly suggests that all steps in the reaction are barrierless, and that weakening of the C-H bonds is directly reflected in the thermodynamics of the overall dehydrogenation process. It is also demonstrated that reaction exergonicity in the initial partial dehydrogenation step must be carried through as excess internal energy into the second dehydrogenation step.

Seasonal and interannual variations of atmospheric CO2 and climate

USGS Publications Warehouse

Dettinger, M.D.; Ghil, M.

1998-01-01

Interannual variations of atmospheric CO2 concentrations at Mauna Loa are almost masked by the seasonal cycle and a strong trend; at the South Pole, the seasonal cycle is small and is almost lost in the trend and interannual variations. Singular-spectrum analysis (SSA) issued here to isolate and reconstruct interannual signals at both sites and to visualize recent decadal changes in the amplitude and phase of the seasonal cycle. Analysis of the Mauna Loa CO2 series illustrates a hastening of the CO2 seasonal cycle, a close temporal relation between Northern Hemisphere (NH) mean temperature trends and the amplitude of the seasonal CO2 cycle, and tentative ties between the latter and seasonality changes in temperature over the NH continents. Variations of the seasonal CO2 cycle at the South Pole differ from those at Mauna Loa: it is phase changes of the seasonal cycle at the South Pole, rather than amplitude changes, that parallel hemispheric and global temperature trends. The seasonal CO2 cycles exhibit earlier occurrences of the seasons by 7 days at Mauna Loa and 18 days at the South Pole. Interannual CO2 variations are shared at the two locations, appear to respond to tropical processes, and can be decomposed mostly into two periodicities, around (3 years)-1 and (4 years)-1, respectively. Joint SSA analyses of CO2 concentrations and tropical climate indices isolate a shared mode with a quasi-triennial (QT) period in which the CO2 and sea-surface temperature (SST) participation are in phase opposition. The other shared mode has a quasi-quadrennial (QQ) period and CO2 variations are in phase with the corresponding tropical SST variations throughout the tropics. Together these interannual modes exhibit a mean lag between tropical SSTs and CO2 variations of about 6-8 months, with SST leading. Analysis of the QT and QQ signals in global gridded SSTs, joint SSA of CO2 and ??13C isotopic ratios, and SSA of CO2 and NH-land temperatures indicate that the QT variations in CO2 mostly reflect upwelling variations in the eastern tropical Pacific. QQ variations are dominated by the CO2 signature of terrestrial-ecosystem response to global QQ climate variations. Climate variations associated with these two interannual components of tropical variability have very different effects on global climate and, especially, on terrestrial ecosystems and the carbon cycle.

Assessment and statistical modeling of the relationship between remotely sensed aerosol optical depth and PM2.5 in the eastern United States.

PubMed

Paciorek, Christopher J; Liu, Yang

2012-05-01

Research in scientific, public health, and policy disciplines relating to the environment increasingly makes use of high-dimensional remote sensing and the output of numerical models in conjunction with traditional observations. Given the public health and resultant public policy implications of the potential health effects of particulate matter (PM*) air pollution, specifically fine PM with an aerodynamic diameter < or = 2.5 pm (PM2.5), there has been substantial recent interest in the use of remote-sensing information, in particular aerosol optical depth (AOD) retrieved from satellites, to help characterize variability in ground-level PM2.5 concentrations in space and time. While the United States and some other developed countries have extensive PM monitoring networks, gaps in data across space and time necessarily occur; the hope is that remote sensing can help fill these gaps. In this report, we are particularly interested in using remote-sensing data to inform estimates of spatial patterns in ambient PM2.5 concentrations at monthly and longer time scales for use in epidemiologic analyses. However, we also analyzed daily data to better disentangle spatial and temporal relationships. For AOD to be helpful, it needs to add information beyond that available from the monitoring network. For analyses of chronic health effects, it needs to add information about the concentrations of long-term average PM2.5; therefore, filling the spatial gaps is key. Much recent evidence has shown that AOD is correlated with PM2.5 in the eastern United States, but the use of AOD in exposure analysis for epidemiologic work has been rare, in part because discrepancies necessarily exist between satellite-retrieved estimates of AOD, which is an atmospheric-column average, and ground-level PM2.5. In this report, we summarize the results of a number of empirical analyses and of the development of statistical models for the use of proxy information, in particular satellite AOD, in predicting PM2.5 concentrations in the eastern United States. We analyzed the spatiotemporal structure of the relationship between PM2.5 and AOD, first using simple correlations both before and after calibration based on meteorology, as well as large-scale spatial and temporal calibration to account for discrepancies between AOD and PM2.5. We then used both raw and calibrated AOD retrievals in statistical models to predict PM2.5 concentrations, accounting for AOD in two ways: primarily as a separate data source contributing a second likelihood to a Bayesian statistical model, as well as a data source on which we could directly regress. Previous consideration of satellite AOD has largely focused on the National Aeronautics and Space Administration (NASA) moderate resolution imaging spectroradiometer (MODIS) and multiangle imaging spectroradiometer (MISR) instruments. One contribution of our work is more extensive consideration of AOD derived from the Geostationary Operational Environmental Satellite East Aerosol/Smoke Product (GOES GASP) AOD and its relationship with PM2.5. In addition to empirically assessing the spatiotemporal relationship between GASP AOD and PM2.5, we considered new statistical techniques to screen anomalous GOES reflectance measurements and account for background surface reflectance. In our statistical work, we developed a new model structure that allowed for more flexible modeling of the proxy discrepancy than previous statistical efforts have had, with a computationally efficient implementation. We also suggested a diagnostic for assessing the scales of the spatial relationship between the proxy and the spatial process of interest (e.g., PM2.5). In brief, we had little success in improving predictions in our eastern-United States domain for use in epidemiologic applications. We found positive correlations of AOD with PM2.5 over time, but less correlation for long-term averages over space, unless we used calibration that adjusted for large-scale discrepancy between AOD and PM2.5 (see sections 3, 4, and 5). Statistical models that combined AOD, PM2.5 observations, and land-use and meteorologic variables were highly predictive of PM2.5 observations held out of the modeling, but AOD added little information beyond that provided by the other sources (see sections 5 and 6). When we used PM2.5 data estimates from the Community Multiscale Air Quality model (CMAQ) as the proxy instead of using AOD, we similarly found little improvement in predicting held-out observations of PM2.5, but when we regressed on CMAQ PM2.5 estimates, the predictions improved moderately in some cases. These results appeared to be caused in part by the fact that large-scale spatial patterns in PM2.5 could be predicted well by smoothing the monitor values, while small-scale spatial patterns in AOD appeared to weakly reflect the variation in PM2.5 inferred from the observations. Using a statistical model that allowed for potential proxy discrepancy at both large and small spatial scales was an important component of our modeling. In particular, when our models did not include a component to account for small-scale discrepancy, predictive performance decreased substantially. Even long-term averages of MISR AOD, considered the best, albeit most sparse, of the AOD products, were only weakly correlated with measured PM2.5 (see section 4). This might have been partly related to the fact that our analysis did not account for spatial variation in the vertical profile of the aerosol. Furthermore, we found evidence that some of the correlation between raw AOD and PM2.5 might have been a function of surface brightness related to land use, rather than having been driven by the detection of aerosol in the AOD retrieval algorithms (see sections 4 and 7). Difficulties in estimating the background surface reflectance in the retrieval algorithms likely explain this finding. With regard to GOES, we found moderate correlations of GASP AOD and PM2.5. The higher correlations of monthly and yearly averages after calibration reflected primarily the improved large-scale correlation, a necessary result of the calibration procedure (see section 3). While the results of this study's GOES reflectance screening and surface reflection correction appeared sensible, correlations of our proposed reflectance-based proxy with PM2.5 were no better than GASP AOD correlations with PM2.5 (see section 7). We had difficulty improving spatial prediction of monthly and yearly average PM2.5 using AOD in the eastern United States, which we attribute to the spatial discrepancy between AOD and measured PM2.5, particularly at smaller scales. This points to the importance of paying attention to the discrepancy structure of proxy information, both from remote-sensing and deterministic models. In particular, important statistical challenges arise in accounting for the discrepancy, given the difficulty in the face of sparse observations of distinguishing the discrepancy from the component of the proxy that is informative about the process of interest. Associations between adverse health outcomes and large-scale variation in PM2.5 (e.g., across regions) may be confounded by unmeasured spatial variation in factors such as diet. Therefore, one important goal was to use AOD to improve predictions of PM2.5 for use in epidemiologic analyses at small-to-moderate spatial scales (within urban areas and within regions). In addition, large-scale PM2.5 variation is well estimated from the monitoring data, at least in the United States. We found little evidence that current AOD products are helpful for improving prediction at small-to-moderate scales in the eastern United States and believe more evidence for the reliability of AOD as a proxy at such scales is needed before making use of AOD for PM2.5 prediction in epidemiologic contexts. While our results relied in part on relatively complicated statistical models, which may be sensitive to modeling assumptions, our exploratory correlation analyses (see sections 3 and 5) and relatively simple regression-style modeling of MISR AOD (see section 4) were consistent with the more complicated modeling results. When assessing the usefulness of AOD in the context of studying chronic health effects, we believe efforts need to focus on disentangling the temporal from the spatial correlations of AOD and PM2.5 and on understanding the spatial scale of correlation and of the discrepancy structure. While our results are discouraging, it is important to note that we attempted to make use of smaller-scale spatial variation in AOD to distinguish spatial variations of relatively small magnitude in long-term concentrations of ambient PM2.5. Our efforts pushed the limits of current technology in a spatial domain with relatively low PM2.5 levels and limited spatial variability. AOD may hold more promise in areas with higher aerosol levels, as the AOD signal would be stronger there relative to the background surface reflectance. Furthermore, for developing countries with high aerosol levels, it is difficult to build statistical models based on PM2.5 measurements and land-use covariates, so AOD may add more incremental information in those contexts. More generally, researchers in remote sensing are involved in ongoing efforts to improve AOD products and develop new approaches to using AOD, such as calibration with model-estimated vertical profiles and the use of speciation information in MISR AOD; these efforts warrant continued investigation of the usefulness of remotely sensed AOD for public health research.

Coherent backscattering effect in spectra of icy satellites and its modeling using multi-sphere T-matrix (MSTM) code for layers of particles

NASA Astrophysics Data System (ADS)

Pitman, Karly M.; Kolokolova, Ludmilla; Verbiscer, Anne J.; Mackowski, Daniel W.; Joseph, Emily C. S.

2017-12-01

The coherent backscattering effect (CBE), the constructive interference of light scattering in particulate surfaces (e.g., regolith), manifests as a non-linear increase in reflectance, or opposition surge, and a narrow negative polarization feature at small solar phase angles. Due to a strong dependence of the amplitude and angular width of this opposition surge on the absorptive characteristics of the surface material, CBE also produces phase-angle-dependent variations in the near-infrared spectra. In this paper we present a survey of such variations in the spectra of icy satellites of Saturn obtained by the Cassini spacecraft's Visual and Infrared Mapping Spectrometer (VIMS) and in the ground-based spectra of Oberon, a satellite of Uranus, obtained with TripleSpec, a cross-dispersed near-infrared spectrometer on the Astrophysical Research Consortium 3.5-m telescope located at the Apache Point Observatory near Sunspot, New Mexico. The paper also presents computer modeling of the saturnian satellite spectra and their phase-angle variations using the most recent version of the Multi-Sphere T-Matrix (MSTM) code developed to simulate light scattering by layers of randomly distributed spherical particles. The modeling allowed us not only to reproduce the observed effects but also to estimate characteristics of the icy particles that cover the surfaces of Rhea, Dione, and Tethys.

Morphological analysis of Trichomycterus areolatus Valenciennes, 1846 from southern Chilean rivers using a truss-based system (Siluriformes, Trichomycteridae).

PubMed

Colihueque, Nelson; Corrales, Olga; Yáñez, Miguel

2017-01-01

Trichomycterus areolatus Valenciennes, 1846 is a small endemic catfish inhabiting the Andean river basins of Chile. In this study, the morphological variability of three T. areolatus populations, collected in two river basins from southern Chile, was assessed with multivariate analyses, including principal component analysis (PCA) and discriminant function analysis (DFA). It is hypothesized that populations must segregate morphologically from each other based on the river basin that they were sampled from, since each basin presents relatively particular hydrological characteristics. Significant morphological differences among the three populations were found with PCA (ANOSIM test, r = 0.552, p < 0.0001) and DFA (Wilks's λ = 0.036, p < 0.01). PCA accounted for a total variation of 56.16% by the first two principal components. The first Principal Component (PC1) and PC2 explained 34.72 and 21.44% of the total variation, respectively. The scatter-plot of the first two discriminant functions (DF1 on DF2) also validated the existence of three different populations. In group classification using DFA, 93.3% of the specimens were correctly-classified into their original populations. Of the total of 22 transformed truss measurements, 17 exhibited highly significant ( p < 0.01) differences among populations. The data support the existence of T. areolatus morphological variation across different rivers in southern Chile, likely reflecting the geographic isolation underlying population structure of the species.

A Model of the Temporal Variability of Optical Light from Extrasolar Terrestrial Planets

NASA Astrophysics Data System (ADS)

Ford, E. B.; Seager, S.; Turner, E. L.

2001-05-01

New observatories such as TPF (NASA) and Darwin (ESA) are being designed to detect light directly from terrestrial-mass planets. Such observations will provide new data to constrain theories of planet formation and may identify the possible presence of liquid water and even spectroscopic signatures suggestive of life. We model the light scattered by Earth-like planets focusing on temporal variability due to planetary rotation and weather. Since a majority of the scattered light comes from only a small fraction of the planet's surface, significant variations in brightness are possible. The variations can be as large as a factor of two for a cloud-free planet which has a range of albedos similar to those of the different surfaces found on Earth. If a significant fraction of the observed light is scattered by the planet's atmosphere, including clouds, then the amplitude of variations due to surface features will be diluted. Atmospheric variability (e.g. clouds) itself is extremely interesting because it provides evidence for weather. The planet's rotation period, fractional ice and cloud cover, gross distribution of land and water on the surface, large scale weather patterns, large regions of unusual reflectivity or color (such as major desserts or vegetation's "red edge") as well as the geometry of its spin, orbit, and illumination relative to the observer all have substantial effects on the planet's rotational light curve.

Full waveform seismic AVAZ signatures of anisotropic shales by integrated rock physics and the reflectivity method

NASA Astrophysics Data System (ADS)

Liu, Xiwu; Guo, Zhiqi; Han, Xu

2018-06-01

A set of parallel vertical fractures embedded in a vertically transverse isotropy (VTI) background leads to orthorhombic anisotropy and corresponding azimuthal seismic responses. We conducted seismic modeling of full waveform amplitude variations versus azimuth (AVAZ) responses of anisotropic shale by integrating a rock physics model and a reflectivity method. The results indicate that the azimuthal variation of P-wave velocity tends to be more complicated for orthorhombic medium compared to the horizontally transverse isotropy (HTI) case, especially at high polar angles. Correspondingly, for the HTI layer in the theoretical model, the short axis of the azimuthal PP amplitudes at the top interface is parallel to the fracture strike, while the long axis at the bottom reflection directs the fracture strike. In contrast, the orthorhombic layer in the theoretical model shows distinct AVAZ responses in terms of PP reflections. Nevertheless, the azimuthal signatures of the R- and T-components of the mode-converted PS reflections show similar AVAZ features for the HTI and orthorhombic layers, which may imply that the PS responses are dominated by fractures. For the application to real data, a seismic-well tie based on upscaled data and a reflectivity method illustrate good agreement between the reference layers and the corresponding reflected events. Finally, the full waveform seismic AVAZ responses of the Longmaxi shale formation are computed for the cases of HTI and orthorhombic anisotropy for comparison. For the two cases, the azimuthal features represent differences mainly in amplitudes, while slightly in the phases of the reflected waveforms. Azimuth variations in the PP reflections from the reference layers show distinct behaviors for the HTI and orthorhombic cases, while the mode-converted PS reflections in terms of the R- and T-components show little differences in azimuthal features. It may suggest that the behaviors of the PS waves are dominated by vertically aligned fractures. This work provides further insight into the azimuthal seismic response of orthorhombic shales. The proposed method may help to improve the seismic-well tie, seismic interpretation, and inversion results using an azimuth anisotropy dataset.

Reflection-induced linear polarization rotation and phase modulation between orthogonal waves for refractive index variation measurement.

PubMed

Twu, Ruey-Ching; Wang, Jhao-Sheng

2016-04-01

An optical phase interrogation is proposed to study reflection-induced linear polarization rotation in a common-path homodyne interferometer. This optical methodology can also be applied to the measurement of the refractive index variation of a liquid solution. The performance of the refractive index sensing structure is discussed theoretically, and the experimental results demonstrated a very good ability based on the proposed schemes. Compared with a conventional common-path heterodyne interferometer, the proposed homodyne interferometer with only a single channel reduced the usage of optic elements.

Reflectance and Thermal Infrared Spectroscopy of Mars: Relationship Between ISM and TES for Compositional Determinations

NASA Technical Reports Server (NTRS)

Boyce, Joseph (Technical Monitor); Mustard, John

2004-01-01

Reflectance spectroscopy has demonstrated that high albedo surfaces on Mars contain heavily altered materials with some component of hematite, poorly crystalline ferric oxides, and an undefined silicate matrix. The spectral properties of many low albedo regions indicate crystalline basalts containing both low and high calcium pyroxene, a mineralogy consistent with the basaltic SNC meteorites. The Thermal Emission Spectrometer (TES) experiment on the Mars Geochemical Surveyor has acquired critical new data relevant to surface composition and mineralogy, but in a wavelength region that is complementary to reflectance spectroscopy. The essence of the completed research was to analyze TES data in the context of reflectance data obtained by the French ISM imaging spectrometer experiment in 1989. This approach increased our understanding of the complementary nature of these wavelength regions for mineralogic determinations using actual observations of the martian surface. The research effort focused on three regions of scientific importance: Syrtis Major-Isidis Basin, Oxia Palus-Arabia, and Valles Marineris. In each region distinct spatial variations related to reflectance, and in derived mineralogic information and interpreted compositional units were analyzed. In addition, specific science questions related to the composition of volcanics and crustal evolution, soil compositions and pedogenic processes, and the relationship between pristine lithologies and weathering provided an overall science-driven framework for the work. The detailed work plan involved colocation of TES and ISM data, extraction of reflectance and emissivity spectra from areas of known reflectance variability, and quantitative analysis using factor analysis and statistical techniques to determine the degree of correspondence between these different wavelength regions. Identified coherent variations in TES spectroscopy were assessed against known atmospheric effects to validate that the variations are due to surface properties. With this new understanding of reflectance and emission spectroscopy, mineralogic interpretations were derived and applied to the science objectives of the three regions.

Multiple attenuation to reflection seismic data using Radon filter and Wave Equation Multiple Rejection (WEMR) method

DOE Office of Scientific and Technical Information (OSTI.GOV)

Erlangga, Mokhammad Puput

Separation between signal and noise, incoherent or coherent, is important in seismic data processing. Although we have processed the seismic data, the coherent noise is still mixing with the primary signal. Multiple reflections are a kind of coherent noise. In this research, we processed seismic data to attenuate multiple reflections in the both synthetic and real seismic data of Mentawai. There are several methods to attenuate multiple reflection, one of them is Radon filter method that discriminates between primary reflection and multiple reflection in the τ-p domain based on move out difference between primary reflection and multiple reflection. However, inmore » case where the move out difference is too small, the Radon filter method is not enough to attenuate the multiple reflections. The Radon filter also produces the artifacts on the gathers data. Except the Radon filter method, we also use the Wave Equation Multiple Elimination (WEMR) method to attenuate the long period multiple reflection. The WEMR method can attenuate the long period multiple reflection based on wave equation inversion. Refer to the inversion of wave equation and the magnitude of the seismic wave amplitude that observed on the free surface, we get the water bottom reflectivity which is used to eliminate the multiple reflections. The WEMR method does not depend on the move out difference to attenuate the long period multiple reflection. Therefore, the WEMR method can be applied to the seismic data which has small move out difference as the Mentawai seismic data. The small move out difference on the Mentawai seismic data is caused by the restrictiveness of far offset, which is only 705 meter. We compared the real free multiple stacking data after processing with Radon filter and WEMR process. The conclusion is the WEMR method can more attenuate the long period multiple reflection than the Radon filter method on the real (Mentawai) seismic data.« less

Coherent X-ray diffraction imaging of zinc oxide crystals

NASA Astrophysics Data System (ADS)

Leake, S. J.

Zinc Oxide (ZnO) exhibits a plethora of physical properties potentially advantageous in many roles and is why it one of the most studied semiconductor compounds. When doped or in its intrinsic state ZnO demonstrates a multitude of electronic, optical and magnetic properties in a large variety of manufacturable morphologies. Thus it is inherently important to understand why these properties arise and the impact potentially invasive sample preparation methods have for both the function and durability of the material and its devices. Coherent X-ray Diffraction Imaging (CXDI) is a recently established non-destructive technique which can probe the whole three dimensional structure of small crystalline materials and has the potential for sub angstrom strain resolution. The iterative methods employed to overcome the `phase problem' are described fully. CXDI studies of wurtzite ZnO crystals in the rod morphology with high aspect ratio are presented. ZnO rods synthesised via Chemical Vapour Transport Deposition were studied in post growth state and during in-situ modification via metal evaporation processing and annealing. Small variations in post growth state were observed, the physical origin of which remains unidentified. The doping of a ZnO crystal with Iron, Nickel and Cobalt by thermal evaporation and subsequent annealing was studied. The evolution of diffusing ions into the crystal lattice from was not observed, decomposition was found to be the dominant process. Improvements in experimental technique allowed multiple Bragg reflections from a single ZnO crystal to be measured for the first time. Large aspect ratio ZnO rods were used to probe the coherence properties of the incident beam. The longitudinal coherence function of the illuminating radiation was mapped using the visibility of the interference pattern at each bragg reflection and an accurate estimate of the longitudinal coherence length obtained, xi(L) = 0.66pm 0.02 mu m. The consequences for data analysis are discussed. The combination of multiple Bragg reflections to realise three dimensional displacement fields was also approached.

Relation of agronomic and multispectral reflectance characteristics of spring wheat canopies

NASA Technical Reports Server (NTRS)

Bauer, M. E. (Principal Investigator); Ahlrichs, J. S.

1982-01-01

The relationships between crop canopy variables such as leaf area index (LAI) and their multispectral reflectance properties were investigated along with the potential for estimating canopy variables from remotely sensed reflectance measurements. Reflectance spectra over the 0.4 to 2.5 micron wavelength range were acquired during each of the major development stages of spring wheat canopies at Williston, North Dakota, during three seasons. Treatments included planting date, N fertilization, cultivar, and soil moisture. Agronomic measurements included development stage, biomass, LAI, and percent soil cover. High correlations were found between reflectance and percent cover, LAI, and biomass. A near infrared wavelength band, 0.76 to 0.90 microns, was most important in explaining variation in LAI and percent cover, while a middle infrared band, 2.08 to 2.35 microns, explained the most variation in biomass and plant water content. Transformations, including the near infrared/red reflectance ratio and greenness index, were also highly correlated to canopy variables. The relationship of canopy variables to reflectance decreased as the crop began to ripen. the canopy variables could be accurately predicted using measurements from three to five wavelength bands. The wavelength bands proposed for the thematic mapper sensor were more strongly related to the canopy variables than the LANDSAT MSS bands.

The income-generating behaviour of injecting drug-users in Oslo.

PubMed

Bretteville-Jensen, A L; Sutton, M

1996-01-01

Drug users' income-generating behaviours, such as prostitution, acquisitive crime and small-scale dealing, have a major influence on the harm caused to the non-using population. Using data on the drug use and income sources of 900 drug-injectors in Oslo, this paper has two aims: to present data on Oslo income-generating behaviours and compare these with those in the Netherlands and Scotland; and to explore conceptual issues in the comparison of self-reported dealing income with other sources. Eighty-three per cent of respondents reported income from social benefit, and 43% had sold drugs in the last month. Half the females reported income from prostitution. The income-generation differences found in the comparisons section do not seem to reflect variations in drug and other social policies, but may relate to differences in the profitability of dealing. Using self-reported dealing income to compare the contributions of different income sources may be misleading, however, since it does not reflect financial profit or the value of dealers' drug consumption. Adjusted figures show that theft accounts for 23% of total drugs expenditure, while the corresponding figures for dealing and prostitution are 42% and 21%, respectively.

The changing phases of extrasolar planet CoRoT-1b.

PubMed

Snellen, Ignas A G; de Mooij, Ernst J W; Albrecht, Simon

2009-05-28

Hot Jupiters are a class of extrasolar planet that orbit their parent stars at very short distances. They are expected to be tidally locked, which can lead to a large temperature difference between their daysides and nightsides. Infrared observations of eclipsing systems have yielded dayside temperatures for a number of transiting planets. The day-night contrast of the transiting extrasolar planet HD 189733b was 'mapped' using infrared observations. It is expected that the contrast between the daysides and nightsides of hot Jupiters is much higher at visual wavelengths, shorter than that of the peak emission, and could be further enhanced by reflected stellar light. Here we report the analysis of optical photometric data obtained over 36 planetary orbits of the transiting hot Jupiter CoRoT-1b. The data are consistent with the nightside hemisphere of the planet being entirely black, with the dayside flux dominating the optical phase curve. This means that at optical wavelengths the planet's phase variation is just as we see it for the interior planets in the Solar System. The data allow for only a small fraction of reflected light, corresponding to a geometric albedo of <0.20.

Contrasts between source parameters of M [>=] 5. 5 earthquakes in northern Baja California and southern California

DOE Office of Scientific and Technical Information (OSTI.GOV)

Doser, D.I.

1993-04-01

Source parameters determined from the body waveform modeling of large (M [>=] 5.5) historic earthquakes occurring between 1915 and 1956 along the San Jacinto and Imperial fault zones of southern California and the Cerro Prieto, Tres Hermanas and San Miguel fault zones of Baja California have been combined with information from post-1960's events to study regional variations in source parameters. The results suggest that large earthquakes along the relatively young San Miguel and Tres Hermanas fault zones have complex rupture histories, small source dimensions (< 25 km), high stress drops (60 bar average), and a high incidence of foreshock activity.more » This may be a reflection of the rough, highly segmented nature of the young faults. In contrast, Imperial-Cerro Prieto events of similar magnitude have low stress drops (16 bar average) and longer rupture lengths (42 km average), reflecting rupture along older, smoother fault planes. Events along the San Jacinto fault zone appear to lie in between these two groups. These results suggest a relationship between the structural and seismological properties of strike-slip faults that should be considered during seismic risk studies.« less

Landsat 8 thermal infrared sensor geometric characterization and calibration

USGS Publications Warehouse

Storey, James C.; Choate, Michael J.; Moe, Donald

2014-01-01

The Landsat 8 spacecraft was launched on 11 February 2013 carrying two imaging payloads: the Operational Land Imager (OLI) and the Thermal Infrared Sensor (TIRS). The TIRS instrument employs a refractive telescope design that is opaque to visible wavelengths making prelaunch geometric characterization challenging. TIRS geometric calibration thus relied heavily on on-orbit measurements. Since the two Landsat 8 payloads are complementary and generate combined Level 1 data products, the TIRS geometric performance requirements emphasize the co-alignment of the OLI and TIRS instrument fields of view and the registration of the OLI reflective bands to the TIRS long-wave infrared emissive bands. The TIRS on-orbit calibration procedures include measuring the TIRS-to-OLI alignment, refining the alignment of the three TIRS sensor chips, and ensuring the alignment of the two TIRS spectral bands. The two key TIRS performance metrics are the OLI reflective to TIRS emissive band registration accuracy, and the registration accuracy between the TIRS thermal bands. The on-orbit calibration campaign conducted during the commissioning period provided an accurate TIRS geometric model that enabled TIRS Level 1 data to meet all geometric accuracy requirements. Seasonal variations in TIRS-to-OLI alignment have led to several small calibration parameter adjustments since commissioning.

Report on the HAARP 2008 Winter Campaign Focusing on Artificial Ionospheric Irregularities

DTIC Science & Technology

2008-07-31

Figure Bl. Magnetic field variations recorded by the fluxgate magnetometer 30 Figure B2. Composite ionogram showing the variation of the reflection...variation was monitored by the Fluxgate Magnetometer . The density irregularities were monitored by the Ionosonde. 20:00 Preliminary Results The...magnetic field variations in three directions (H, D, and Z) recorded by the fluxgate magnetometer from UTC 20:00 to 04:00 are shown in the plots of

Variation of surface water spectral response as a function of in situ sampling technique

NASA Technical Reports Server (NTRS)

Davis, Bruce A.; Hodgson, Michael E.

1988-01-01

Tests were carried out to determine the spectral variation contributed by a particular sampling technique. A portable radiometer was used to measure the surface water spectral response. Variation due to the reflectance of objects near the radiometer (i.e., the boat side) during data acquisition was studied. Consideration was also given to the variation due to the temporal nature of the phenomena (i.e., wave activity).

Gambling for Gatorade: risk-sensitive decision making for fluid rewards in humans

PubMed Central

Platt, Michael L.

2009-01-01

Determining how both humans and animals make decisions in risky situations is a central problem in economics, experimental psychology, behavioral economics, and neurobiology. Typically, humans are risk seeking for gains and risk averse for losses, while animals may display a variety of preferences under risk depending on, amongst other factors, internal state. Such differences in behavior may reflect major cognitive and cultural differences or they may reflect differences in the way risk sensitivity is probed in humans and animals. Notably, in most studies humans make one or a few choices amongst hypothetical or real monetary options, while animals make dozens of repeated choices amongst options offering primary rewards like food or drink. To address this issue, we probed risk-sensitive decision making in human participants using a paradigm modeled on animal studies, in which rewards were either small squirts of Gatorade or small amounts of real money. Possible outcomes and their probabilities were not made explicit in either case. We found that individual patterns of decision making were strikingly similar for both juice and for money, both in overall risk preferences and in trial-to-trial effects of reward outcome on choice. Comparison with decisions made by monkeys for juice in a similar task revealed highly similar gambling styles. These results unite known patterns of risk-sensitive decision making in human and nonhuman primates and suggest that factors such as the way a decision is framed or internal state may underlie observed variation in risk preferences between and within species. PMID:18719953

Metal concentrations in the tissues of the hydrothermal vent mussel Bathymodiolus: reflection of different metal sources.

PubMed

Koschinsky, Andrea; Kausch, Matteo; Borowski, Christian

2014-04-01

Hydrothermal vent mussels of the genus Bathymodiolus are ideally positioned for the use of recording hydrothermal fluxes at the hydrothermal vent sites they inhabit. Barium, Ca, Cd, Co, Cr, Cu, Fe, K, Mg, Mn, Mo, Pb, Sr, and U concentrations in tissue sections of Bathymodiolus mussels from several hydrothermal fields between 15°N and 9°S at the Mid-Atlantic Ridge were determined and compared to the surrounding fluids and solid substrates in the habitats. Elements generally enriched in hydrothermal fluids, such as Fe, Cu, Zn, Pb and Cd, were significantly enriched in the gills and digestive glands of the hydrothermal mussels. The rather small variability of Zn (and Mn) and positive correlation with K and earth alkaline metals may indicate a biological regulation of accumulation. Enrichments of Mo and U in many tissue samples indicate that particulate matter such as hydrothermal mineral particles from the plumes can play a more important role as a metal source than dissolved metals. Highest enrichments of Cu in mussels from the Golden Valley site indicate a relation to the ≥400 °C hot heavy-metal rich fluids emanating in the vicinity. In contrast, mussels from the low-temperature Lilliput field are affected by the Fe oxyhydroxide sediment of their habitat. In a comparison of two different sites within the Logatchev field metal distributions in the tissues reflected small-scale local variations in the metal content of the fluids and the particulate material. Copyright © 2014 Elsevier Ltd. All rights reserved.

Filter paper solid-phase radioimmunoassay for human rotavirus surface immunoglobulins.

PubMed Central

Watanabe, H; Holmes, I H

1977-01-01

A filter paper solid-phase radioimmunoassay has been developed. Filter paper disks adsorbed a large amount of rotavirus and serum globulin and gave small mean variation of coating and low background binding. The rotavirus isolated from stools from infants with acute enteritis 1, 3, and 4 days after onset of symptoms was shown to be already covered with immunoglobulin G (IgG), IgA, and IgM antibodies by this radioimmunoassay, by immunoelectrophoresis, and by immune electron microscopy. The immunoglobulins covering the virus particle were partially separated during 125I labeling and eluted at the position expected for IgG during Sephadex G-200 gel filtration. Rabbit antiserum prepared against purified fecal rotavirus contained not only rotavirus antibodies but also a fairly large amount of immunoglobulin antibody, reflecting the antibodies on the rotavirus particle surface. Images PMID:199613

Extended Malus law with terahertz metallic metamaterials for sensitive detection with giant tunable quality factor

NASA Astrophysics Data System (ADS)

Romain, Xavier; Baida, Fadi; Boyer, Philippe

2016-07-01

We study a polarizer-analyzer mounting for the terahertz regime with perfectly conducting metallic polarizers made of a periodic subwavelength pattern. With a renewed Jones formalism, we analytically investigate the influence of the multiple reflections, which occur between the polarizer and the analyzer, on the transmission response. We demonstrate that this interaction leads to a modified transmission response: the extended Malus law. In addition, we show that the transmission response can be controlled by the distance between the polarizer and the analyzer. For particular setups, the mounting exhibits extremely sensitive transmission responses. This interesting feature can be employed for high-precision sensing and characterization applications. We specifically propose a general design for measuring the electro-optical response of materials in the terahertz domain allowing detection of refractive index variations as small as 10-5.

Sensitivity analysis for oblique incidence reflectometry using Monte Carlo simulations.

PubMed

Kamran, Faisal; Andersen, Peter E

2015-08-10

Oblique incidence reflectometry has developed into an effective, noncontact, and noninvasive measurement technology for the quantification of both the reduced scattering and absorption coefficients of a sample. The optical properties are deduced by analyzing only the shape of the reflectance profiles. This article presents a sensitivity analysis of the technique in turbid media. Monte Carlo simulations are used to investigate the technique and its potential to distinguish the small changes between different levels of scattering. We present various regions of the dynamic range of optical properties in which system demands vary to be able to detect subtle changes in the structure of the medium, translated as measured optical properties. Effects of variation in anisotropy are discussed and results presented. Finally, experimental data of milk products with different fat content are considered as examples for comparison.

Physics, mathematics and numerics of particle adsorption on fluid interfaces

NASA Astrophysics Data System (ADS)

Schmuck, Markus; Pavliotis, Grigorios A.; Kalliadasis, Serafim

2012-11-01

We study two arbitrary immiscible fuids where one phase contains small particles of the size of the interface and smaller. We primarily focus on charge-free particles with wetting characteristics described by the contact angle formed at the interface between the two phases and the particles. Based on the experimental observation that particles are adsorbed on the interface to reduce the interfacial energy and hence the surface tension as well, we formulate a free-energy functional that accounts for these physical effects. Using elements from calculus of variations and formal gradient flow theory, we derive partial differential equations describing the location of the interface and the density of the particles in the fluid phases. Via numerical experiments we analyse the time evolution of the surface tension, the particle concentration, and the free energy over time and reflect basic experimentally observed phenomena.

Heavy metal contamination from gold mining recorded in Porites lobata skeletons, Buyat-Ratototok district, North Sulawesi, Indonesia.

PubMed

Edinger, Evan N; Azmy, Karem; Diegor, Wilfredo; Siregar, P Raja

2008-09-01

Shallow marine sediments and fringing coral reefs of the Buyat-Ratototok district of North Sulawesi, Indonesia, are affected by submarine disposal of tailings from industrial gold mining and by small-scale gold mining using mercury amalgamation. Between-site variation in heavy metal concentrations in shallow marine sediments was partially reflected by trace element concentrations in reef coral skeletons from adjacent reefs. Corals skeletons recorded silicon, manganese, iron, copper, chromium, cobalt, antimony, thallium, and lead in different concentrations according to proximity to sources, but arsenic concentrations in corals were not significantly different among sites. Temporal analysis found that peak concentrations of arsenic and chromium generally coincided with peak concentrations of silica and/or copper, suggesting that most trace elements in the coral skeleton were incorporated into detrital siliciclastic sediments, rather than impurities within skeletal aragonite.

Testing the mate-choice hypothesis of the female orgasm: disentangling traits and behaviours.

PubMed

Sherlock, James M; Sidari, Morgan J; Harris, Emily Ann; Barlow, Fiona Kate; Zietsch, Brendan P

2016-01-01

The evolution of the female orgasm in humans and its role in romantic relationships is poorly understood. Whereas the male orgasm is inherently linked to reproduction, the female orgasm is not linked to obvious reproductive or survival benefits. It also occurs less consistently during penetrative sex than does the male orgasm. Mate-choice hypotheses posit that the wide variation in female orgasm frequency reflects a discriminatory mechanism designed to select high-quality mates. We aimed to determine (1) whether women report that their orgasm frequency varies between partners, (2) whether this variation reflects mates' personal characteristics, and (3) whether this variation reflects own and partner sexual behaviour during intercourse. We collected survey data from 103 women who rated (1) the extent to which their orgasm frequency varied between partners, (2) the characteristics of previous sexual partners who induced high-orgasm frequency and those who induced low-orgasm frequency, and (3) the specific behaviours during sex with those partners. This is the first study to test within-woman variation in orgasm and partner traits. Overall, women reported variation in their orgasm rates with different partners. Partners who induced high-orgasm rates were rated as more humorous, creative, warm, faithful, and better smelling than partners who induced low-orgasm rates, and also engaged in greater efforts to induce partner orgasm. Some assumptions and predictions of mate-choice hypotheses of female orgasm were supported, while other aspects of our findings provide reasons to remain sceptical.

Testing the mate-choice hypothesis of the female orgasm: disentangling traits and behaviours

PubMed Central

Sherlock, James M.; Sidari, Morgan J.; Harris, Emily Ann; Barlow, Fiona Kate; Zietsch, Brendan P.

2016-01-01

Background The evolution of the female orgasm in humans and its role in romantic relationships is poorly understood. Whereas the male orgasm is inherently linked to reproduction, the female orgasm is not linked to obvious reproductive or survival benefits. It also occurs less consistently during penetrative sex than does the male orgasm. Mate-choice hypotheses posit that the wide variation in female orgasm frequency reflects a discriminatory mechanism designed to select high-quality mates. Objective We aimed to determine (1) whether women report that their orgasm frequency varies between partners, (2) whether this variation reflects mates' personal characteristics, and (3) whether this variation reflects own and partner sexual behaviour during intercourse. Design We collected survey data from 103 women who rated (1) the extent to which their orgasm frequency varied between partners, (2) the characteristics of previous sexual partners who induced high-orgasm frequency and those who induced low-orgasm frequency, and (3) the specific behaviours during sex with those partners. This is the first study to test within-woman variation in orgasm and partner traits. Results Overall, women reported variation in their orgasm rates with different partners. Partners who induced high-orgasm rates were rated as more humorous, creative, warm, faithful, and better smelling than partners who induced low-orgasm rates, and also engaged in greater efforts to induce partner orgasm. Conclusions Some assumptions and predictions of mate-choice hypotheses of female orgasm were supported, while other aspects of our findings provide reasons to remain sceptical. PMID:27791967

Study of Tropospheric Ozone and UV Reflectivity Using TOMS Data

NASA Technical Reports Server (NTRS)

Yung, Yuk L.

2002-01-01

Perhaps the single most important result from the study of Chuang and Yung is that the interannual variability of the Earth's albedo (especially in Spring) on land is dominated by snow/ice, and not by clouds. This interannual variability could be the major driver of changes in the atmosphere and the biosphere. It is plausible that the interannual variability of snow/ice, through interactions with the atmosphere and biosphere, is responsible for the interannual variability of atmospheric CO2. By carefully studying the albedo variations off the Peru coast, we found evidence for indirect aerosol effect on clouds. Based on a detailed analysis of the cloud data obtained by the International Satellite Cloud Climatology Project (SCCP) in the years 1983-1991, we show that besides the reported 3 % variation in global cloudiness, the global mean cloud optical thickness (MCOT) also has significant variation which is out of phase with that of the global cloudiness. The combined effect of the two opposing variations may be a null effect on the cloud reflectivity. These results are consistent with the Total Ozone Mapping Spectrometer (TOMS) reflectively measurements. The MCOT variation is further shown to be correlated with both the solar cycle and the ENSO (El Nino Southern Oscillation) cycle. Our present analysis cannot distinguish which of the above two provides better correlation, although independent data from the High resolution Infrared Radiation Sounder (HIRS) from 1990 to 1996 favor the solar cycle. Future data are needed to identify the true cause of these changes.

Subitizing Reflects Visuo-Spatial Object Individuation Capacity

ERIC Educational Resources Information Center

Piazza, Manuela; Fumarola, Antonia; Chinello, Alessandro; Melcher, David

2011-01-01

Subitizing is the immediate apprehension of the exact number of items in small sets. Despite more than a 100 years of research around this phenomenon, its nature and origin are still unknown. One view posits that it reflects a number estimation process common for small and large sets, which precision decreases as the number of items increases,…

Detecting seismic anisotropy across the 410 km discontinuity through polarity and amplitude variations of the underside reflections

NASA Astrophysics Data System (ADS)

Saki, Morvarid; Thomas, Christine; Merkel, Sebastien; Wookey, James

2017-04-01

We investigate the effect of various types of deformation mechanisms on the reflection coefficients of P and S waves underside reflections off the 410 km discontinuity, to find a diagnostic tool to detect the style of deformation at boundary layers. We calculate the reflection coefficient for P and SH underside reflections depending on the variation in velocity perturbations across the 410 km discontinuity for two deformation scenarios, compression and shear for different azimuths and angles of incidence at the interface. The results show that in the case of an anisotropic olivine layer above an isotropic wadsleyite layer, the P wave reflection coefficient amplitudes are only slightly influenced by the joint effect of angle of incidence and the strength of imposed deformation, without any polarity reversal and for all deformation styles. For the SH wave underside reflections a more complicated behaviour is visible: In compressional deformation, a polarity reversal occurs at distances depending on the incidence angle and the intensity of applied deformation without any azimuthal dependency. However, for shear geometry the azimuth to the direction of deformation appears as an important factor which strongly affects the incidence angle at which the polarity reversal of the reflected S wave occurs. These differences in amplitude and polarity patterns of reflection coefficients of different deformation geometries, especially for S wave at shorter distances allow to detect the style of deformation mechanisms at a boundary layer.

Broadband optical radiation detector

NASA Technical Reports Server (NTRS)

Gupta, A.; Hong, S. D.; Moacanin, J. (Inventor)

1981-01-01

A method and apparatus for detecting optical radiation by optically monitoring temperature changes in a microvolume caused by absorption of the optical radiation to be detected is described. More specifically, a thermal lens forming material is provided which has first and second opposite, substantially parallel surfaces. A reflective coating is formed on the first surface, and a radiation absorbing coating is formed on the reflective coating. Chopped, incoming optical radiation to be detected is directed to irradiate a small portion of the radiation absorbing coating. Heat generated in this small area is conducted to the lens forming material through the reflective coating, thereby raising the temperature of a small portion of the lens forming material and causing a thermal lens to be formed therein.

Radiation pressure and air drag effects on the orbit of the balloon satellite 1963 30D

NASA Technical Reports Server (NTRS)

Slowey, J. W.

1974-01-01

Computed orbits of the balloon satellite 1963 30D are given every 2 days over an interval of 456 days near the beginning of the satellite's lifetime and an interval of 824 days near the end of its lifetime. The effects of radiation pressure on the satellite are examined in some detail. It is found that the variations in all the elements can be represented by use of a single parameter to specify the effect of diffuse reflection from the satellite's surface, and that this parameter remains constant, or nearly so, during the entire 7-year lifetime. Success in obtaining a consistent representation of the radiation-pressure effects is ascribed to the inclusion of the effects of terrestrial radiation pressure, using a model for the earth's albedo that includes seasonal and latitudinal variations. Anomalous effects in the orbital acceleration, as well as in the other elements, are represented quite well by including a small force at right angle to the solar direction and by allowing this to rotate about the solar direction. This implies that the satellite is aspherical, that it is rotating, and that the axis of rotation precesses.

The difficulty with correlations: Energy expenditure and brain mass in bats.

PubMed

McNab, Brian K; Köhler, Meike

2017-10-01

Brain mass has been suggested to determine a mammal's energy expenditure. This potential dependence is examined in 48 species of bats. A correlation between characters may be direct or derived from shared correlations with intervening factors without a direct interaction. Basal rate of metabolism in these bats increases with brain mass: large brains are more expensive than small brains, and both brain mass and basal rate increase with body mass. Basal rate and brain mass also correlate with food habits in bats. Mass-independent basal rate weakly correlates with mass-independent brain mass, the correlation only accounting for 12% of the variation in basal rate, which disappears when the combined effects of body mass and food habits are deleted. The correlation between basal rate and brain mass seen in this and other studies usually accounts for <10% of the variation in basal rate and often <4%, even when statistically significant, a minimalist explanation for the level the basal rate. This correlation probably reflects the intermediacy of secondary factors, as occurred with food habits in bats. Most biological correlations are complicated and must be examined in detail before assurance can be given as to their bases. Copyright © 2017 Elsevier Inc. All rights reserved.

Thermoluminescence and Antarctic meteorites

NASA Technical Reports Server (NTRS)

Sears, D. W. G.; Hasan, F. A.

1986-01-01

The level of natural thermoluminescence (TL) in meteorites is the result of competition between build-up, due to exposure to cosmic radiation, and thermal decay. Antarctic meteorites tend to have lower natural TL than non-Antarctic meteorites because of their generally larger terrestrial ages. However, since a few observed falls have low TL due to a recent heating event, such as passage within approximately 0.7 astronomical units of the Sun, this could also be the case for some Antarctic meteorites. Dose rate variations due to shielding, heating during atmospheric passage, and anomalous fading also cause natural TL variations, but the effects are either relatively small, occur infrequently, or can be experimentally circumvented. The TL sensitivity of meteorites reflects the abundance and nature of the feldspar. Thus intense shock, which destroys feldspar, causes the TL sensitivity to decrease by 1 to 2 orders of magnitude, while metamorphism, which generates feldspar through the devitrification of glass, causes TL sensitivity to increase by a factor of approximately 10000. The TL-metamorphism relationship is particularly strong for the lowest levels of metamorphism. The order-disorder transformation in feldspar also affect the TL emission characteristics and thus TL provides a means of paleothermometry.

Efficient mixing of the solar nebula from uniform Mo isotopic composition of meteorites.

PubMed

Becker, Harry; Walker, Richard J

2003-09-11

The abundances of elements and their isotopes in our Galaxy show wide variations, reflecting different nucleosynthetic processes in stars and the effects of Galactic evolution. These variations contrast with the uniformity of stable isotope abundances for many elements in the Solar System, which implies that processes efficiently homogenized dust and gas from different stellar sources within the young solar nebula. However, isotopic heterogeneity has been recognized on the subcentimetre scale in primitive meteorites, indicating that these preserve a compositional memory of their stellar sources. Small differences in the abundance of stable molybdenum isotopes in bulk rocks of some primitive and differentiated meteorites, relative to terrestrial Mo, suggest large-scale Mo isotopic heterogeneity between some inner Solar System bodies, which implies physical conditions that did not permit efficient mixing of gas and dust. Here we report Mo isotopic data for bulk samples of primitive and differentiated meteorites that show no resolvable deviations from terrestrial Mo. This suggests efficient mixing of gas and dust in the solar nebula at least to 3 au from the Sun, possibly induced by magnetohydrodynamic instabilities. These mixing processes must have occurred before isotopic fractionation of gas-phase elements and volatility-controlled chemical fractionations were established.

Infrared photometric behavior and opposition effect of Mars

NASA Technical Reports Server (NTRS)

Erard, S.; Bibring, J-P.; Drossart, P.

1992-01-01

Although the instrument wasn't designed for this purpose, data from the imaging spectrometer ISM may be used for studying photometric variations of Mars reflectance, that are related to the surface materials and aerosols physical properties. ISM flew aboard the Phobos-2 spacecraft which orbited Mars from January to March, 1989. About 40,000 spectra were acquired in 128 channels ranging from 0.76 to 3.16 micro-m, with a spatial resolution of 25 km and a signal-to-noise ratio ranging up to 1000. Analysis of the results leads to the following conclusions: width variations of the opposition surge can be related to differences in porosity or grain size distribution on the various domains, with little or no effect from suspended dust. As the biggest effects are observed on dark and bright materials, intermediate behaviors on average-bright regions cannot result from a mixing process, but are more likely to come from either cementation processes or modification of the grain size distribution under the influence of wind, which under Martian conditions preferentially removes the biggest particles. Thus, a surface dust consisting in big bright and small dark grains could explain the observations.

Cancer, Warts, or Asymptomatic Infections: Clinical Presentation Matches Codon Usage Preferences in Human Papillomaviruses

PubMed Central

Félez-Sánchez, Marta; Trösemeier, Jan-Hendrik; Bedhomme, Stéphanie; González-Bravo, Maria Isabel; Kamp, Christel; Bravo, Ignacio G.

2015-01-01

Viruses rely completely on the hosts’ machinery for translation of viral transcripts. However, for most viruses infecting humans, codon usage preferences (CUPrefs) do not match those of the host. Human papillomaviruses (HPVs) are a showcase to tackle this paradox: they present a large genotypic diversity and a broad range of phenotypic presentations, from asymptomatic infections to productive lesions and cancer. By applying phylogenetic inference and dimensionality reduction methods, we demonstrate first that genes in HPVs are poorly adapted to the average human CUPrefs, the only exception being capsid genes in viruses causing productive lesions. Phylogenetic relationships between HPVs explained only a small proportion of CUPrefs variation. Instead, the most important explanatory factor for viral CUPrefs was infection phenotype, as orthologous genes in viruses with similar clinical presentation displayed similar CUPrefs. Moreover, viral genes with similar spatiotemporal expression patterns also showed similar CUPrefs. Our results suggest that CUPrefs in HPVs reflect either variations in the mutation bias or differential selection pressures depending on the clinical presentation and expression timing. We propose that poor viral CUPrefs may be central to a trade-off between strong viral gene expression and the potential for eliciting protective immune response. PMID:26139833

The effects of geology and the impact of seasonal correction factors on indoor radon levels: a case study approach.

PubMed

Gillmore, Gavin K; Phillips, Paul S; Denman, Antony R

2005-01-01

Geology has been highlighted by a number of authors as a key factor in high indoor radon levels. In the light of this, this study examines the application of seasonal correction factors to indoor radon concentrations in the UK. This practice is based on an extensive database gathered by the National Radiological Protection Board over the years (small-scale surveys began in 1976 and continued with a larger scale survey in 1988) and reflects well known seasonal variations observed in indoor radon levels. However, due to the complexity of underlying geology (the UK arguably has the world's most complex solid and surficial geology over the shortest distances) and considerable variations in permeability of underlying materials it is clear that there are a significant number of occurrences where the application of a seasonal correction factor may give rise to over-estimated or under-estimated radon levels. Therefore, the practice of applying a seasonal correction should be one that is undertaken with caution, or not at all. This work is based on case studies taken from the Northamptonshire region and comparisons made to other permeable geologies in the UK.

Reaction Norms in Natural Conditions: How Does Metabolic Performance Respond to Weather Variations in a Small Endotherm Facing Cold Environments?

PubMed Central

Petit, Magali; Vézina, François

2014-01-01

Reaction norms reflect an organisms' capacity to adjust its phenotype to the environment and allows for identifying trait values associated with physiological limits. However, reaction norms of physiological parameters are mostly unknown for endotherms living in natural conditions. Black-capped chickadees (Poecile atricapillus) increase their metabolic performance during winter acclimatization and are thus good model to measure reaction norms in the wild. We repeatedly measured basal (BMR) and summit (Msum) metabolism in chickadees to characterize, for the first time in a free-living endotherm, reaction norms of these parameters across the natural range of weather variation. BMR varied between individuals and was weakly and negatively related to minimal temperature. Msum varied with minimal temperature following a Z-shape curve, increasing linearly between 24°C and −10°C, and changed with absolute humidity following a U-shape relationship. These results suggest that thermal exchanges with the environment have minimal effects on maintenance costs, which may be individual-dependent, while thermogenic capacity is responding to body heat loss. Our results suggest also that BMR and Msum respond to different and likely independent constraints. PMID:25426860

Magnetoelastic effect in MF2 (M = Mn, Fe, Ni) investigated by neutron powder diffraction

NASA Astrophysics Data System (ADS)

Chatterji, Tapan; Iles, Gail N.; Ouladdiaf, Bachir; Hansen, Thomas C.

2010-08-01

We have investigated the magnetoelastic effects in MF2 (M = Mn, Fe, Ni) associated with the antiferromagnetic phase transition temperature TN by neutron powder diffraction. The temperature variation of the lattice parameters and the unit cell volume has been determined accurately with small temperature steps. From the temperature variation of the lattice parameters a, c and V the lattice strains Δa, Δc and ΔV associated with the antiferromagnetic phase transition have been extracted. Rietveld refinement of the crystal and magnetic structures from the diffraction data at low temperature gave a magnetic moment of 5.12 ± 0.09 μB, 4.05 ± 0.05 μB and 1.99 ± 0.05 μB per Mn, Fe and Ni ions, respectively. The lattice strains Δa, Δc and ΔV couple linearly with the intensity of the 100 magnetic reflection, which is proportional to square of the order parameter of the antiferromagnetic phase transition. The volume strains in MF2 (M = Mn, Fe, Co, Ni) due to the magnetostriction vary smoothly along the transition metal series and seem to be correlated with the strength of the exchange interaction and the moments of the magnetic ions.

Magnetoelastic effect in MF2 (M = Mn, Fe, Ni) investigated by neutron powder diffraction.

PubMed

Chatterji, Tapan; Iles, Gail N; Ouladdiaf, Bachir; Hansen, Thomas C

2010-08-11

We have investigated the magnetoelastic effects in MF(2) (M = Mn, Fe, Ni) associated with the antiferromagnetic phase transition temperature T(N) by neutron powder diffraction. The temperature variation of the lattice parameters and the unit cell volume has been determined accurately with small temperature steps. From the temperature variation of the lattice parameters a, c and V the lattice strains Δa, Δc and ΔV associated with the antiferromagnetic phase transition have been extracted. Rietveld refinement of the crystal and magnetic structures from the diffraction data at low temperature gave a magnetic moment of 5.12 ± 0.09 μ(B), 4.05 ± 0.05 μ(B) and 1.99 ± 0.05 μ(B) per Mn, Fe and Ni ions, respectively. The lattice strains Δa, Δc and ΔV couple linearly with the intensity of the 100 magnetic reflection, which is proportional to square of the order parameter of the antiferromagnetic phase transition. The volume strains in MF(2) (M = Mn, Fe, Co, Ni) due to the magnetostriction vary smoothly along the transition metal series and seem to be correlated with the strength of the exchange interaction and the moments of the magnetic ions.

Land surface phenology as a coarse-filter indicator of disturbance and climatic effects across the coast redwood range

Treesearch

Steven P. Norman; William W. Hargrove

2012-01-01

Satellite-based measurements provide a systematic measure of the seasonal fluctuations and general condition of forest vegetation, including that of the coast redwood region. Year-toyear variation in greenness may be caused by gradual disturbances, successional recovery or climatic variation, while within-year variation reflects disturbance events and the response of...

Influences on Bythotrephes longimanus life-history characteristics in the Great Lakes

USGS Publications Warehouse

Pothoven, Steven A.; Vanderploeg, Henry A.; Warner, David M.; Schaeffer, Jeffrey S.; Ludsin, Stuart A.; Claramunt, Randall M.; Nalepa, Thomas F.

2012-01-01

We compared Bythotrephes population demographics and dynamics to predator (planktivorous fish) and prey (small-bodied crustacean zooplankton) densities at a site sampled through the growing season in Lakes Michigan, Huron, and Erie. Although seasonal average densities of Bythotrephes were similar across lakes (222/m2 Erie, 247/m2 Huron, 162/m2 Michigan), temporal trends in abundance differed among lakes. In central Lake Erie where Bythotrephes' prey assemblage was dominated by small individuals (60%), where planktivorous fish densities were high (14,317/ha), and where a shallow water column limited availability of a deepwater refuge, the Bythotrephes population was characterized by a small mean body size, large broods with small neonates, allocation of length increases mainly to the spine rather than to the body, and a late summer population decline. By contrast, in Lake Michigan where Bythotrephes' prey assemblage was dominated by large individuals (72%) and planktivorous fish densities were lower (5052/ha), the Bythotrephes population was characterized by a large mean body size (i.e., 37–55% higher than in Erie), small broods with large neonates, nearly all growth in body length occurring between instars 1 and 2, and population persistence into fall. Life-history characteristics in Lake Huron tended to be intermediate to those found in Lakes Michigan and Erie, reflecting lower overall prey and predator densities (1224/ha) relative to the other lakes. Because plasticity in life history can affect interactions with other species, our findings point to the need to understand life-history variation among Great Lakes populations to improve our ability to model the dynamics of these ecosystems.

Chemical and U-Sr isotopic variations of stream and source waters at a small catchment scale (the Strengbach case; Vosges mountains; France)

NASA Astrophysics Data System (ADS)

Pierret, M. C.; Stille, P.; Prunier, J.; Viville, D.; Chabaux, F.

2014-03-01

This is the first comprehensive study dealing with major and trace element data as well as 87Sr/86Sr isotope and (234U/238U) activity ratios (AR) determined on the totality of springs and brooks of the Strengbach catchment. It shows that the small and more or less monolithic catchment drains different sources and streamlets with very different isotopic and geochemical signatures. Different parameters control the diversity of the source characteristics. Of importance is especially the hydrothermal overprint of the granitic bedrock, which was stronger for the granite from the northern than from the southern slope; also significant are the different meteoric alteration processes of the bedrock causing the formation of 0.5 to 9 m thick saprolite and above the formation of an up to 1 m thick soil system. These processes mainly account for springs and brooks from the northern slope having higher Ca/Na, Mg/Na, Sr/Na ratios but lower 87Sr/86Sr isotopic ratios than those from the southern slope. The chemical compositions of the source waters in the Strengbach catchment are only to a small extent the result of alteration of primary bedrock minerals and rather reflect dissolution/precipitation processes of secondary mineral phases like clay minerals. The (234U/238U) AR, however, are decoupled from the 87Sr/86Sr isotope system and reflect to some extent the level of altitude of the source and, thus, the degree of alteration of the bedrock. The sources emerging at high altitudes have circulated through already weathered materials (saprolite and fractured rock depleted in 234U) implying (234U/238U) AR < 1, which is uncommon for surface waters. Preferential flow paths along constant fractures in the bedrocks might explain the over time homogeneous U AR of the different spring waters. However, the geochemical and isotopic variations of stream waters at the outlet of the catchment are controlled by variable contributions of different springs depending on the hydrological conditions. It appears that the (234U/238U) AR is an appropriate very important tracer for studying and deciphering the contribution of the different source fluxes at the catchment scale because this unique geochemical parameter is different for each individual spring and at the same time remains unchanged for each of the springs with changing discharge and fluctuating hydrological conditions. This study further highlights the important impact of different and independent water pathways in fractured granite controlling the different geochemical and isotopic signatures of the waters.

Occurrence and Magnitude of High Reflectance Materials on the Moon

NASA Astrophysics Data System (ADS)

Nuno, R. G.; Boyd, A. K.; Robinson, M. S.

2013-12-01

We utilize a Lunar Reconnaissance Orbiter (LRO) Wide Angle Camera (WAC) 643 nm photometrically normalized (30°, 0°, 30°; i, e, g) reflectance map to investigate the occurrence and origin of high reflectance materials on the Moon. Compositional differences (mainly iron and titanium content) and maturity state (e.g. Copernican crater rays and swirls) are the predominant factors affecting reflectance variations observed on the Moon. Therefore, comparing reflectance values of different regions yields insight into the composition and relative exposure age of lunar materials. But an accurate comparison requires precise reflectance values normalized across every region being investigated. The WAC [1] obtains monthly near-global ground coverage, each month's observations acquired with different lighting conditions. Boyd et al. [2] utilized a geologically homogeneous subset [0°N to 90°N, 146°E to 148°E] of the WAC observations to determine an equation that describes how viewing and lighting angles affect reflectance values. A normalized global reflectance map was generated by applying the local empirical solution globally, with photometric angles derived from the WAC Global Lunar Digital Terrain Model (DTM)(GLD100) [3]. The GLD100 enables accurate correction of reflectance differences caused by local topographic undulations at the scale of 300 meters. We compare reflectance values across the Moon within 80°S to 80°N latitude. The features with the highest reflectance are steep crater walls within Copernican aged craters, such as the walls of Giordano Bruno, which have normalized reflectance values up to 0.35. Near-impact ejecta of some craters have high reflectance values, such as Virtanen (0.22). There are also broad relatively flat features with high reflectance, such as the 900-km Thales-Compton region (0.24) and the 600-km extent of Anaxagoras (Copernican age) ejecta (0.20). Since the interior of Anaxagoras contains occurrences of pure anorthosite [4], the high reflectance of its ray system may be due to both composition and maturity. Some relatively small isolated features exhibit high reflectance, such as the Compton-Belkovich Volcanic Complex (0.24) and rilles in the floor of Compton crater (0.27). Features associated with pure anorthosite [4] are also found to have high reflectance values, such as occurrences in Mare Orientale (0.22). Since the photometric normalization accounted for topography up to the 300-m horizontal spatial scale, uncertainties remain for steep crater walls. We are currently reducing these uncertainties for selected craters with high resolution (15 meter baseline) stereo-based NAC DTMs. References: [1] Robinson et al. (2010), Space Sci. Rev. [2] Boyd et al. (2013) AGU, this conference. [3] Scholten et al. (2012) JGR. [4] Ohtake et al. (2009) Nature.

Estimating Terra MODIS Polarization Effect Using Ocean Data

NASA Technical Reports Server (NTRS)

Wald, Andrew E.; Brinkmann, Jake; Wu, Aisheng; Xiong, Jack

2016-01-01

Terra MODIS has been known since pre-launch to have polarization sensitivity, particularly in shortest-wavelength bands 8 and 9. On-orbit reflectance trending of pseudo-invariant sites show a variation in reflectance as a function of band and scan mirror angle of incidence consistent with time-dependent polarization effects from the rotating double-sided scan mirror. The MODIS Characterization Support Team [MCST] estimates the Mueller matrix trending from this variation as observed from a single desert site, but this effect is not included in Collection 6 [C6] calibration. Here we extend the MCSTs current polarization sensitivity monitoring to two ocean sites distributed over latitude to helpestimate the uncertainties in the derived Mueller matrix. The Mueller matrix elements derived for polarization-sensitive Band 8 for a given site are found to be fairly insensitive to surface brdf modeling. The site-to-site variation is a measure of the uncertainty in the Mueller estimation.Results for band 8 show that the polarization correction reduces mirror-side striping by up to 50% and reduces the instrument polarization effect on reflectance time series of an ocean target.

Compositional variability of the Martian surface

NASA Technical Reports Server (NTRS)

Adams, John B.; Smith, Milton O.

1991-01-01

Spectral reflectance data from Viking Landers and Orbiters and from telescopic observations were analyzed with the objective of isolating compositional information about the Martian surface and assessing compositional variability. Two approaches were used to calibrate the data to reflectance to permit direct comparisons with laboratory reference spectra of well characterized materials. In Viking Lander multispectral images (six spectral bands) most of the spectral variation is caused by changes in lighting geometry within individual scenes, from scene to scene, and over time. Lighting variations are both wavelength independent and wavelength dependent. By calibrating lander image radiance values to reflectance using spectral mixture analysis, the possible range of compositions was assessed with reference to a collection of laboratory samples, also resampled to the lander spectral bands. All spectra from the lander images studied plot (in six-space) within a planar triangle having at the apexes the respective spectra of tan basaltic palagonite, gray basalt, and shale. Within this plane all lander spectra fit as mixtures of these three endmembers. Reference spectra that plot outside of the triangle are unable to account for the spectral variation observed in the images.

The impact of temperature and precipitation on blacklegged tick activity and Lyme disease incidence in endemic and emerging regions.

PubMed

Burtis, James C; Sullivan, Patrick; Levi, Taal; Oggenfuss, Kelly; Fahey, Timothy J; Ostfeld, Richard S

2016-11-25

The incidence of Lyme disease shows high degrees of inter-annual variation in the northeastern United States, but the factors driving this variation are not well understood. Complicating matters, it is also possible that these driving factors may vary in regions with differing histories of Lyme disease endemism. We evaluated the effect of the number of hot (T > 25 °C), dry (precipitation = 0) days during the questing periods of the two immature Ixodes scapularis life stages (larval and nymphal) on inter-annual variation in Lyme disease incidence between 2000 and 2011 in long-term endemic versus recently endemic areas. We also evaluated the effect of summer weather on tick questing activity and the number of ticks found on small mammals between 1994 and 2012 on six sites in Millbrook, NY. The number of hot, dry days during the larval period of the previous year did not affect the human incidence of Lyme disease or the density of questing nymphs the following season. However, dry summer weather during the nymphal questing period had a significant negative effect on the incidence of Lyme disease in the long-term endemic areas, and on the density of questing nymphs. Summer weather conditions had a more pronounced effect on actively questing I. scapularis collected via dragging than on the number of ticks found feeding on small mammals. In recently endemic areas Lyme disease incidence increased significantly over time, but no trend was detected between disease incidence and dry summer weather. Recently endemic regions showed an increase in Lyme disease incidence over time, while incidence in long-term endemic regions appears to have stabilized. Only within the stabilized areas were we able to detect reduced Lyme disease incidence in years with hot, dry summer weather. These patterns were reflected in our field data, which showed that questing activity of nymphal I. scapularis was reduced by hot, dry summer weather.

Thallium isotope variations in an ore-bearing continental igneous setting: Collahuasi Formation, northern Chile

NASA Astrophysics Data System (ADS)

Baker, R. G. A.; Rehkämper, M.; Ihlenfeld, C.; Oates, C. J.; Coggon, R.

2010-08-01

Thallium is a highly incompatible element and a large fraction of the bulk silicate Earth Tl budget is, therefore, expected to reside in the continental crust. Nonetheless, the Tl isotope systematics of continental rocks are essentially unexplored at present. Here, we present new Tl isotope composition and concentration data for a suite of 36 intrusive and extrusive igneous rocks from the vicinity of porphyry Cu deposits in the Collahuasi Formation of the Central Andes in northern Chile. The igneous lithologies of the rocks are variably affected by the hydrothermal alteration that accompanied the formation of the Cu deposits. The samples display Tl concentrations that vary by more than an order of magnitude, from 0.1 to 3.2 μg/g, whilst ɛ 205Tl ranges between -5.1 and +0.1 (ɛ 205Tl is the deviation of the 205Tl/ 203Tl isotope ratio of a sample from a standard in parts per 10 4). These variations are primarily thought to be a consequence of hydrothermal alteration processes, including metasomatic transport of Tl, and formation/breakdown of Tl-bearing minerals, which are associated with small but significant Tl isotope effects. The Tl abundances show excellent correlations with both K and Rb concentrations but no co-variation with Cu. This demonstrates that Tl displays only limited chalcophile affinity in the continental crust of the Collahuasi Formation, but behaves as a lithophile element with a distribution that is primarily governed by partitioning of Tl + into K +-bearing phases. Collahuasi samples with propylitic alteration features, which are derived from the marginal parts of the hydrothermal systems, have, on average, slightly lighter Tl isotope compositions than rocks from the more central sericitic and argillic alteration zones. This small but statistically significant difference most likely reflects preferential retention of isotopically heavy Tl in alteration phases, such as white micas and clays, which formed during sericitic and argillic alteration.

Geomorphic controls on floodplain organic carbon storage in sediment along five rivers in interior Alaska

NASA Astrophysics Data System (ADS)

Lininger, K.; Wohl, E.; Rose, J. R.

2016-12-01

High latitude permafrost regions contain large amounts of organic carbon (OC) in the subsurface, but little work has quantified OC storage in floodplain sediment in the high latitudes. Floodplains influence the export of OC to the ocean by temporarily storing OC at timescales of 101 to 103 years. To fully understand terrestrial carbon cycling, the storage and residence time of OC in floodplains, and the geomorphic controls on OC storage, must be taken into account. Small-scale spatial variations in OC storage within floodplains likely reflect geomorphic processes of deposition and floodplain development. We present results of floodplain OC storage and residence time in sediment along 5 rivers in the Yukon Flats National Wildlife Refuge in interior Alaska, a region with discontinuous permafrost. We collected sediment samples within the active layer along tributaries to the Yukon River and the mainstem Yukon River and analyzed the sediment samples for OC content. We classified sample locations by geomorphic type (filled secondary channels, levees, point bars) and vegetation type (herbaceous, deciduous/shrub, white spruce, and black spruce wetlands), and found that both geomorphology and vegetation influence OC concentration and OC mass per area. Preliminary results suggest that filled secondary channels contain more OC per area compared to other geomorphic types. We present results of radiocarbon dates from river cutbanks associated with our sampling sites, which give a maximum age for residence times of OC in sediment before erosion and transport. The radiocarbon dates also provide estimates of long-term OC accretion within the Yukon Flats floodplains. Small-scale variations within floodplains as a result of floodplain depositional processes and vegetation communities shed light on the geomorphic controls on OC storage. This work will help constrain the spatial variation in OC storage and OC residence time across the landscape in a region experiencing rapid climate change and permafrost thaw.

Photometric Lambert Correction for Global Mosaicking of HRSC Data

NASA Astrophysics Data System (ADS)

Walter, Sebastian; Michael, Greg; van Gasselt, Stephan; Kneissl, Thomas

2015-04-01

The High Resolution Stereo Camera (HRSC) is a push-broom image sensor onboard Mars Express recording the Martian surface in 3D and color. Being in orbit since 2004, the camera has obtained over 3,600 panchromatic image sequences covering about 70% of the planet's surface at 10-20 m/pixel. The composition of an homogenous global mosaic is a major challenge due to the strong elliptical and highly irregular orbit of the spacecraft, which often results in large variations of illumination and atmospheric conditions between individual images. For the purpose of a global mosaic in the full Nadir resolution of 12.5 m per pixel we present a first-order systematic photometric correction for the individual image sequences based on a Lambertian reflection model. During the radiometric calibration of the HRSC data, values for the reflectance scaling factor and the reflectance offset are added to the individual image labels. These parameters can be used for a linear transformation from the original DN values into spectral reflectance values. The spectral reflectance varies with the solar incidence angle, topography (changing the local incidence angle and therefore adding an exta geometry factor for each ground pixel), the bi-directional reflectance distribution function (BRDF) of the surface, and atmospheric effects. Mosaicking the spectral values together as images sometimes shows large brightness differences. One major contributor to the brightness differences between two images is the differing solar geometry due to the varying time of day when the individual images were obtained. This variation causes two images of the same or adjacent areas to have different image brightnesses. As a first-order correction for the varying illumination conditions and resulting brightness variations, the images are corrected for the solar incidence angle by assuming an ideal diffusely reflecting behaviour of the surface. This correction requires the calculation of the solar geometry for each image pixel by an image-to-ground function. For the calculations we are using the VICAR framework and the SPICE library. Under the Lambertian assumption, the reflectance diminishment resulting from an inclined Sun angle can be corrected by dividing the measured reflectance by the cosine of the illumination angle. After rectification of the corrected images, the individual images are mosaicked together. The overall visual impression shows a much better integration of the individual image sequences. The correction resolves the direct correlation between the reflectance and the incidence angles from the data. It does not account for topographic, atmospheric or BRDF influences to the measurements. Since the main purpose of the global HRSC image mosaic is the application for geomorphologic studies with a good visual impression of the albedo variations and the topography, the remaining distortions at the image seams can be equalized by non-reversible image matching techniques.

Dynamic Vertical Profiles of Peat Porewater Chemistry in a Northern Peatland

DOE Office of Scientific and Technical Information (OSTI.GOV)

Griffiths, Natalie A.; Sebestyen, Stephen D.

We measured pH, cations, nutrients, and total organic carbon (TOC) over 3 years to examine weekly to monthly variability in porewater chemistry depth profiles (0–3.0 m) in an ombrotrophic bog in Minnesota, USA. We also compared temporal variation at one location to spatial variation in depth profiles at 16 locations across the bog. Most solutes exhibited large gradients with depth. pH increased by two units and calcium concentrations increased over 20 fold with depth, and may reflect peatland development from minerotrophic to ombrotrophic conditions. Ammonium concentrations increased almost 20 fold and TOC concentrations decreased by half with depth, and thesemore » patterns likely reflect mineralization of peat or decomposition of TOC. There was also considerable temporal variation in the porewater chemistry depth profiles. Ammonium, soluble reactive phosphorus, and potassium showed greater temporal variation in near-surface porewater, while pH, calcium, and TOC varied more at depth. This variation demonstrates that deep peat porewater chemistry is not static. Lastly, temporal variation in solute chemistry depth profiles was greater than spatial variation in several instances, especially in shallow porewaters. In conclusion, characterizing both temporal and spatial variability is necessary to ensure representative sampling in peatlands, especially when calculating solute pools and fluxes and parameterizing process-based models.« less

Dynamic Vertical Profiles of Peat Porewater Chemistry in a Northern Peatland

DOE PAGES

Griffiths, Natalie A.; Sebestyen, Stephen D.

2016-10-14

We measured pH, cations, nutrients, and total organic carbon (TOC) over 3 years to examine weekly to monthly variability in porewater chemistry depth profiles (0–3.0 m) in an ombrotrophic bog in Minnesota, USA. We also compared temporal variation at one location to spatial variation in depth profiles at 16 locations across the bog. Most solutes exhibited large gradients with depth. pH increased by two units and calcium concentrations increased over 20 fold with depth, and may reflect peatland development from minerotrophic to ombrotrophic conditions. Ammonium concentrations increased almost 20 fold and TOC concentrations decreased by half with depth, and thesemore » patterns likely reflect mineralization of peat or decomposition of TOC. There was also considerable temporal variation in the porewater chemistry depth profiles. Ammonium, soluble reactive phosphorus, and potassium showed greater temporal variation in near-surface porewater, while pH, calcium, and TOC varied more at depth. This variation demonstrates that deep peat porewater chemistry is not static. Lastly, temporal variation in solute chemistry depth profiles was greater than spatial variation in several instances, especially in shallow porewaters. In conclusion, characterizing both temporal and spatial variability is necessary to ensure representative sampling in peatlands, especially when calculating solute pools and fluxes and parameterizing process-based models.« less

Electro-optic study of PZT ferroelectric ceramics using modulation of reflected light

NASA Astrophysics Data System (ADS)

Kniazkov, A. V.

2016-04-01

Electro-optic coefficients of variations in the refractive index of PZT and PLZT ceramic materials induced by ac electric field are estimated using modulation of reflected light. The electro-optic coefficients of PLZT ceramics measured with the aid of conventional birefringence using the phase shift of transmitted radiation and the proposed method of birefringence using the modulation of reflected light are compared.

Canalization of body size matters for lifetime reproductive success of male predatory mites (Acari: Phytoseiidae)

PubMed Central

Walzer, Andreas; Schausberger, Peter

2014-01-01

The adaptive canalization hypothesis predicts that highly fitness-relevant traits are canalized via past selection, resulting in low phenotypic plasticity and high robustness to environmental stress. Accordingly, we hypothesized that the level of phenotypic plasticity of male body size of the predatory mites Phytoseiulus persimilis (low plasticity) and Neoseiulus californicus (high plasticity) reflects the effects of body size variation on fitness, especially male lifetime reproductive success (LRS). We first generated small and standard-sized males of P. persimilis and N. californicus by rearing them to adulthood under limited and ample prey supply, respectively. Then, adult small and standard-sized males were provided with surplus virgin females throughout life to assess their mating and reproductive traits. Small male body size did not affect male longevity or the number of fertilized females but reduced male LRS of P. persimilis but not N. californicus. Proximately, the lower LRS of small than standard-sized P. persimilis males correlated with shorter mating durations, probably decreasing the amount of transferred sperm. Ultimately, we suggest that male body size is more strongly canalized in P. persimilis than N. californicus because deviation from standard body size has larger detrimental fitness effects in P. persimilis than N. californicus. © 2014 The Authors. Biological Journal of the Linnean Society published by John Wiley & Sons Ltd on behalf of The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 111, 889–899. PMID:25132689

Site-specific ultrasound reflection properties and superficial collagen content of bovine knee articular cartilage

NASA Astrophysics Data System (ADS)

Laasanen, Mikko S.; Saarakkala, Simo; Töyräs, Juha; Rieppo, Jarno; Jurvelin, Jukka S.

2005-07-01

Previous quantitative 2D-ultrasound imaging studies have demonstrated that the ultrasound reflection measurement of articular cartilage surface sensitively detects degradation of the collagen network, whereas digestion of cartilage proteoglycans has no significant effect on the ultrasound reflection. In this study, the first aim was to characterize the ability of quantitative 2D-ultrasound imaging to detect site-specific differences in ultrasound reflection and backscattering properties of cartilage surface and cartilage-bone interface at visually healthy bovine knee (n = 30). As a second aim, we studied factors controlling ultrasound reflection properties of an intact cartilage surface. The ultrasound reflection coefficient was determined in time (R) and frequency domains (IRC) at medial femoral condyle, lateral patello-femoral groove, medial tibial plateau and patella using a 20 MHz ultrasound imaging instrument. Furthermore, cartilage surface roughness was quantified by calculating the ultrasound roughness index (URI). The superficial collagen content of the cartilage was determined using a FT-IRIS-technique. A significant site-dependent variation was shown in cartilage thickness, ultrasound reflection parameters, URI and superficial collagen content. As compared to R and IRC, URI was a more sensitive parameter in detecting differences between the measurement sites. Ultrasound reflection parameters were not significantly related to superficial collagen content, whereas the correlation between R and URI was high. Ultrasound reflection at the cartilage-bone interface showed insignificant site-dependent variation. The current results suggest that ultrasound reflection from the intact cartilage surface is mainly dependent on the cartilage surface roughness and the collagen content has a less significant role.

Floristic composition and across-track reflectance gradient in Landsat images over Amazonian forests

NASA Astrophysics Data System (ADS)

Muro, Javier; doninck, Jasper Van; Tuomisto, Hanna; Higgins, Mark A.; Moulatlet, Gabriel M.; Ruokolainen, Kalle

2016-09-01

Remotely sensed image interpretation or classification of tropical forests can be severely hampered by the effects of the bidirectional reflection distribution function (BRDF). Even for narrow swath sensors like Landsat TM/ETM+, the influence of reflectance anisotropy can be sufficiently strong to introduce a cross-track reflectance gradient. If the BRDF could be assumed to be linear for the limited swath of Landsat, it would be possible to remove this gradient during image preprocessing using a simple empirical method. However, the existence of natural gradients in reflectance caused by spatial variation in floristic composition of the forest can restrict the applicability of such simple corrections. Here we use floristic information over Peruvian and Brazilian Amazonia acquired through field surveys, complemented with information from geological maps, to investigate the interaction of real floristic gradients and the effect of reflectance anisotropy on the observed reflectances in Landsat data. In addition, we test the assumption of linearity of the BRDF for a limited swath width, and whether different primary non-inundated forest types are characterized by different magnitudes of the directional reflectance gradient. Our results show that a linear function is adequate to empirically correct for view angle effects, and that the magnitude of the across-track reflectance gradient is independent of floristic composition in the non-inundated forests we studied. This makes a routine correction of view angle effects possible. However, floristic variation complicates the issue, because different forest types have different mean reflectances. This must be taken into account when deriving the correction function in order to avoid eliminating natural gradients.

Population size is weakly related to quantitative genetic variation and trait differentiation in a stream fish.

PubMed

Wood, Jacquelyn L A; Tezel, Defne; Joyal, Destin; Fraser, Dylan J

2015-09-01

How population size influences quantitative genetic variation and differentiation among natural, fragmented populations remains unresolved. Small, isolated populations might occupy poor quality habitats and lose genetic variation more rapidly due to genetic drift than large populations. Genetic drift might furthermore overcome selection as population size decreases. Collectively, this might result in directional changes in additive genetic variation (VA ) and trait differentiation (QST ) from small to large population size. Alternatively, small populations might exhibit larger variation in VA and QST if habitat fragmentation increases variability in habitat types. We explored these alternatives by investigating VA and QST using nine fragmented populations of brook trout varying 50-fold in census size N (179-8416) and 10-fold in effective number of breeders, Nb (18-135). Across 15 traits, no evidence was found for consistent differences in VA and QST with population size and almost no evidence for increased variability of VA or QST estimates at small population size. This suggests that (i) small populations of some species may retain adaptive potential according to commonly adopted quantitative genetic measures and (ii) populations of varying sizes experience a variety of environmental conditions in nature, however extremely large studies are likely required before any firm conclusions can be made. © 2015 The Author(s). Evolution © 2015 The Society for the Study of Evolution.

Projection scheme for a reflected stochastic heat equation with additive noise

NASA Astrophysics Data System (ADS)

Higa, Arturo Kohatsu; Pettersson, Roger

2005-02-01

We consider a projection scheme as a numerical solution of a reflected stochastic heat equation driven by a space-time white noise. Convergence is obtained via a discrete contraction principle and known convergence results for numerical solutions of parabolic variational inequalities.

Seasonal variations in modern speleothem calcite growth in Central Texas, U.S.A

USGS Publications Warehouse

Banner, J.L.; Guilfoyle, A.; James, E.W.; Stern, L.A.; Musgrove, M.

2007-01-01

Variations in growth rates of speleothem calcite have been hypothesized to reflect changes in a range of paleoenvironmental variables, including atmospheric temperature and precipitation, drip-water composition, and the rate of soil CO2 delivery to the subsurface. To test these hypotheses, we quantified growth rates of modern speleothem calcite on artificial substrates and monitored concurrent environmental conditions in three caves across the Edwards Plateau in central Texas. Within each of two caves, different drip sites exhibit similar annual cycles in calcite growth rates, even though there are large differences between the mean growth rates at the sites. The growth-rate cycles inversely correlate to seasonal changes in regional air temperature outside the caves, with near-zero growth rates during the warmest summer months, and peak growth rates in fall through spring. Drip sites from caves 130 km apart exhibit similar temporal patterns in calcite growth rate, indicating a controlling mechanism on at least this distance. The seasonal variations in calcite growth rate can be accounted for by a primary control by regional temperature effects on ventilation of cave-air CO2 concentrations and/or drip-water CO2 contents. In contrast, site-to-site differences in the magnitude of calcite growth rates within an individual cave appear to be controlled principally by differences in drip rate. A secondary control by drip rate on the growth rate temporal variations is suggested by interannual variations. No calcite growth was observed in the third cave, which has relatively high values of and small seasonal changes in cave-air CO2. These results indicate that growth-rate variations in ancient speleothems may serve as a paleoenvironmental proxy with seasonal resolution. By applying this approach of monitoring the modern system, speleothem growth rate and geochemical proxies for paleoenviromnental change may be evaluated and calibrated. Copyright ?? 2007, SEPM (Society for Sedimentary Geology).

DOE Office of Scientific and Technical Information (OSTI.GOV)

Battum, LJ van; Heukelom, S

Purpose This study investigates the origin of lateral optical density (OD) variation for Gafchromic film (EBT and EBT2) scanned in transmission mode with Epson flatbed scanners (1680 Expression Pro and 10000XL). Effects investigated are: cross talk, optical path length and polarization. Methods Cross talk has been examined with triangular shaped light-transmission sheets with OD ranging from 0 to opaque. Optical path length has been studied with absorptive and reflective OD-filters (OD range 0.2 to 2.0). Dependency on light-polarization on the scanner read out has been investigated using linear polarizer sheets. All experiments have been performed at centre scanner position (normmore » point) and at several lateral scan positions, without and with (un)irradiated EBT-film. Dose values used ranged between 0.2 to 9 Gy, yielding an OD-range between 0.25 to 1.1. Results The lateral OD variation is dose dependent and increases up to 14% at most lateral position for dose up to 9 Gy. Cross talk effect contributes to 0.5% in clinical used OD ranges but equals 2% for extreme high dose gradients. Film induced optical path length will effect the lateral OD variation up to 3% at most lateral points. Light polarization is inherent present in these scanners due to multiple reflection on mirrors. In addition film induced polarization is the most important effect generating the observed lateral OD variation. Both Gafchromic film base and sensitive layer have polarizing capabilities; for the sensitive layer its influence is dose dependent. Conclusions Lateral OD variation origins from optical physics (i.e. polarization and reflection) related to scanner and film construction. Cross talk can be ignored in film dosimetry for clinical used dose values and gradients. Therefore it is recommended to determine the lateral OD variation per film type and scanner.« less

The Global Albedo of the Moon at 1064 nm from LOLA

NASA Technical Reports Server (NTRS)

Lucey, P. G.; Neumann, G. A.; Riner, M. A.; Mazarico, E.; Smith, D. E.; Zuber, M. T.; Paige, D. A.; Bussey, D. B.; Cahill, J. T.; McGovern, A.;

Inter-doctor variations in the assessment of functional incapacities by insurance physicians

PubMed Central

2011-01-01

Background The aim of this study was to determine the - largely unexplored - extent of systematic variation in the work disability assessment by Dutch insurance physicians (IPs) of employees on long-term sick leave, and to ascertain whether this variation was associated with the individual characteristics and opinions of IPs. Methods In March 2008 we conducted a survey among IPs on the basis of the 'Attitude - Social norm - self-Efficacy' (ASE) model. We used the ensuing data to form latent variables for the ASE constructs. We then linked the background variables and the measured constructs for IPs (n = 199) working at regional offices (n = 27) to the work disability assessments of clients (n = 83,755) and their characteristics. These assessments were carried out between July 2003 and April 2008. We performed multilevel regression analysis on three important assessment outcomes: No Sustainable Capacity or Restrictions for Working Hours (binominal), Functional Incapacity Score (scale 0-6) and Maximum Work Disability Class (binominal). We calculated Intra Class Correlations (ICCs) at IP level and office level and explained variances (R2) for the three outcomes. A higher ICC reflects stronger systematic variation. Results The ICCs at IP level were approximately 6% for No Sustainable Capacity or Restrictions for Working Hours and Maximum Work Disability Class and 12% for Functional Incapacity Score. Background IP variables and the measured ASE constructs for physicians contributed very little to the variation - at most 1%. The ICCs at office level ranged from 0% to around 1%. The R2 was 11% for No Sustainable Capacity or Restrictions for Working Hours, 19% for Functional Incapacity Score and 37% for Maximum Work Disability Class. Conclusion Our study uncovered small to moderate systematic variations in the outcome of disability assessments in the Netherlands. However, the individual characteristics and opinions of insurance physicians have very little impact on these variations. Our findings provided no indications of other reasons for these variations. They may be related to different work routines or to different views on the workload of a 'normal' employee. If so, they could be reduced by well-developed and comprehensively implemented guidelines. Therefore, further research is needed. PMID:22077926

MGS Radio Science Electron Density Profiles: Interannual Variability and Implications for the Martian Neutral Atmosphere

NASA Technical Reports Server (NTRS)

Bougher, Stephen W.; Engel, S.; Hinson, D. P.; Murphy, J. R.

2003-01-01

Martian electron density profiles provided by the Mars Global Surveyor (MGS) Radio Science (RS) experiment over the 95-200 km altitude range indicate that the height of the electron peak and the longitudinal structure of the peak height are sensitive indicators of the physical state of the Mars lower atmosphere. The present analysis is carried out on five sets of occultation profiles, all at high solar zenith angles (SZA). Variations spanning 2-Martian years are investigated near aphelion conditions at high Northern latitudes (64.7-77.6N). A mean ionospheric peak height of 133.5-135 km was obtained for all aphelion profiles near SZA = 78-82; a corresponding mean peak density of 7.3-8.5 x 10(exp 4)/cu cm was also measured, reflecting solar moderate conditions. Strong wave 2-3 oscillations in peak heights were observed as a function of longitude over both Martian seasons. The Mars Thermospheric General Circulation Model (MTGCM) is exercised for Mars aphelion conditions. The measured interannual variations in the mean and longitude structure of the peak heights are small (consistent with MTGCM simulations), signifying the repeatability of the Mars atmosphere during aphelion conditions. A non-migrating (semi-diurnal period, wave#l eastward propagating) tidal mode is likely responsible for the wave#3 longitude features identified. The height of this photochemically driven peak can be observed to provide an ongoing monitor of the changing state of the Mars lower atmosphere. The magnitudes of these same peaks may reflect more than changing solar EUV fluxes when they are located in the vicinity of Mars crustal magnetic field centers.

A strong correlation between induced peak dynamic Coulomb stress change from the 1992 M7.3 Landers, California, earthquake and the hypocenter of the 1999 M7.1 Hector Mine, California, earthquake

NASA Astrophysics Data System (ADS)

Kilb, Debi

2003-01-01

The 1992 M7.3 Landers earthquake may have played a role in triggering the 1999 M7.1 Hector Mine earthquake as suggested by their close spatial (˜20 km) proximity. Current investigations of triggering by static stress changes produce differing conclusions when small variations in parameter values are employed. Here I test the hypothesis that large-amplitude dynamic stress changes, induced by the Landers rupture, acted to promote the Hector Mine earthquake. I use a flat layer reflectivity method to model the Landers earthquake displacement seismograms. By requiring agreement between the model seismograms and data, I can constrain the Landers main shock parameters and velocity model. A similar reflectivity method is used to compute the evolution of stress changes. I find a strong positive correlation between the Hector Mine hypocenter and regions of large (>4 MPa) dynamic Coulomb stress changes (peak Δσf(t)) induced by the Landers main shock. A positive correlation is also found with large dynamic normal and shear stress changes. Uncertainties in peak Δσf(t) (1.3 MPa) are only 28% of the median value (4.6 MPa) determined from an extensive set (160) of model parameters. Therefore the correlation with dynamic stresses is robust to a range of Hector Mine main shock parameters, as well as to variations in the friction and Skempton's coefficients used in the calculations. These results imply dynamic stress changes may be an important part of earthquake trigging, such that large-amplitude stress changes alter the properties of an existing fault in a way that promotes fault failure.

Insights into shallow magmatic processes at Kīlauea Volcano, Hawaiʻi, from a multiyear continuous gravity time series

USGS Publications Warehouse

Poland, Michael P.; Carbone, Daniele

2016-01-01

Continuous gravity data collected near the summit eruptive vent at Kīlauea Volcano, Hawaiʻi, during 2011–2015 show a strong correlation with summit-area surface deformation and the level of the lava lake within the vent over periods of days to weeks, suggesting that changes in gravity reflect variations in volcanic activity. Joint analysis of gravity and lava level time series data indicates that over the entire time period studied, the average density of the lava within the upper tens to hundreds of meters of the summit eruptive vent remained low—approximately 1000–1500 kg/m3. The ratio of gravity change (adjusted for Earth tides and instrumental drift) to lava level change measured over 15 day windows rose gradually over the course of 2011–2015, probably reflecting either (1) a small increase in the density of lava within the eruptive vent or (2) an increase in the volume of lava within the vent due to gradual vent enlargement. Superimposed on the overall time series were transient spikes of mass change associated with inflation and deflation of Kīlauea's summit and coincident changes in lava level. The unexpectedly strong mass variations during these episodes suggest magma flux to and from the shallow magmatic system without commensurate deformation, perhaps indicating magma accumulation within, and withdrawal from, void space—a process that might not otherwise be apparent from lava level and deformation data alone. Continuous gravity data thus provide unique insights into magmatic processes, arguing for continued application of the method at other frequently active volcanoes.

Carbonate fabrics in the modern microbialites of Pavilion Lake: two suites of microfabrics that reflect variation in microbial community morphology, growth habit, and lithification.

PubMed

Theisen, C Harwood; Sumner, D Y; Mackey, T J; Lim, D S S; Brady, A L; Slater, G F

2015-07-01

Modern microbialites in Pavilion Lake, BC, provide an analog for ancient non-stromatolitic microbialites that formed from in situ mineralization. Because Pavilion microbialites are mineralizing under the influence of microbial communities, they provide insights into how biological processes influence microbialite microfabrics and mesostructures. Hemispherical nodules and micrite-microbial crusts are two mesostructures within Pavilion microbialites that are directly associated with photosynthetic communities. Both filamentous cyanobacteria in hemispherical nodules and branching filamentous green algae in micrite-microbial crusts were associated with calcite precipitation at microbialite surfaces and with characteristic microfabrics in the lithified microbialite. Hemispherical nodules formed at microbialite surfaces when calcite precipitated around filamentous cyanobacteria with a radial growth habit. The radial filament pattern was preserved within the microbialite to varying degrees. Some subsurface nodules contained well-defined filaments, whereas others contained only dispersed organic inclusions. Variation in filament preservation is interpreted to reflect differences in timing and amount of carbonate precipitation relative to heterotrophic decay, with more defined filaments reflecting greater lithification prior to degradation than more diffuse filaments. Micrite-microbial crusts produce the second suite of microfabrics and form in association with filamentous green algae oriented perpendicular to the microbialite surface. Some crusts include calcified filaments, whereas others contained voids that reflect the filamentous community in shape, size, and distribution. Pavilion microbialites demonstrate that microfabric variation can reflect differences in lithification processes and microbial metabolisms as well as microbial community morphology and organization. Even when the morphology of individual filaments or cells is not well preserved, the microbial growth habit can be captured in mesoscale microbialite structures. These results suggest that when petrographic preservation is extremely good, ancient microbialite growth structures and microfabrics can be interpreted in the context of variation in community organization, community composition, and lithification history. Even in the absence of distinct microbial microfabrics, mesostructures can capture microbial community morphology. © 2015 John Wiley & Sons Ltd.

Hyperspectral Vehicle BRDF Learning: An Exploration of Vehicle Reflectance Variation and Optimal Measures of Spectral Similarity for Vehicle Reacquisition and Tracking Algorithms

NASA Astrophysics Data System (ADS)

Svejkosky, Joseph

The spectral signatures of vehicles in hyperspectral imagery exhibit temporal variations due to the preponderance of surfaces with material properties that display non-Lambertian bi-directional reflectance distribution functions (BRDFs). These temporal variations are caused by changing illumination conditions, changing sun-target-sensor geometry, changing road surface properties, and changing vehicle orientations. To quantify these variations and determine their relative importance in a sub-pixel vehicle reacquisition and tracking scenario, a hyperspectral vehicle BRDF sampling experiment was conducted in which four vehicles were rotated at different orientations and imaged over a six-hour period. The hyperspectral imagery was calibrated using novel in-scene methods and converted to reflectance imagery. The resulting BRDF sampled time-series imagery showed a strong vehicle level BRDF dependence on vehicle shape in off-nadir imaging scenarios and a strong dependence on vehicle color in simulated nadir imaging scenarios. The imagery also exhibited spectral features characteristic of sampling the BRDF of non-Lambertian targets, which were subsequently verified with simulations. In addition, the imagery demonstrated that the illumination contribution from vehicle adjacent horizontal surfaces significantly altered the shape and magnitude of the vehicle reflectance spectrum. The results of the BRDF sampling experiment illustrate the need for a target vehicle BRDF model and detection scheme that incorporates non-Lambertian BRDFs. A new detection algorithm called Eigenvector Loading Regression (ELR) is proposed that learns a hyperspectral vehicle BRDF from a series of BRDF measurements using regression in a lower dimensional space and then applies the learned BRDF to make test spectrum predictions. In cases of non-Lambertian vehicle BRDF, this detection methodology performs favorably when compared to subspace detections algorithms and graph-based detection algorithms that do not account for the target BRDF. The algorithms are compared using a test environment in which observed spectral reflectance signatures from the BRDF sampling experiment are implanted into aerial hyperspectral imagery that contain large quantities of vehicles.

Small sensitivity to temperature variations of Si-photonic Mach-Zehnder interferometer using Si and SiN waveguides

NASA Astrophysics Data System (ADS)

Hiraki, Tatsurou; Fukuda, Hiroshi; Yamada, Koji; Yamamoto, Tsuyoshi

2015-03-01

We demonstrated a small sensitivity to temperature variations of delay-line Mach-Zehnder interferometer (DL MZI) on a Si photonics platform. The key technique is to balance a thermo-optic effect in the two arms by using waveguide made of different materials. With silicon and silicon nitride waveguides, the fabricated DL MZI with a free-spectrum range of ~40 GHz showed a wavelength shift of -2.8 pm/K with temperature variations, which is 24 times smaller than that of the conventional Si-waveguide DL MZI. We also demonstrated the decoding of the 40-Gbit/s differential phase-shift keying signals to on-off keying signals with various temperatures. The tolerable temperature variation for the acceptable power penalty was significantly improved due to the small wavelength shifts.

Primer Vector Optimization: Survey of Theory, New Analysis and Applications

NASA Technical Reports Server (NTRS)

Guzman, J. J.; Mailhe, L. M.; Schiff, C.; Hughes, S. P.; Folta, D. C.

2002-01-01

In this paper, a summary of primer vector theory is presented. The applicability of primer vector theory is examined in an effort to understand when and why the theory can fail. For example, since the Calculus of Variations is based on "small" variations, singularities in the linearized (variational) equations of motion along the arcs must be taken into account. These singularities are a recurring problem in analyse that employ small variations. Two examples, the initialization of an orbit and a line of apsides rotation, are presented. Recommendations, future work, and the possible addition of other optimization techniques are also discussed.

[Hydrologic variability and sensitivity based on Hurst coefficient and Bartels statistic].

PubMed

Lei, Xu; Xie, Ping; Wu, Zi Yi; Sang, Yan Fang; Zhao, Jiang Yan; Li, Bin Bin

2018-04-01

Due to the global climate change and frequent human activities in recent years, the pure stochastic components of hydrological sequence is mixed with one or several of the variation ingredients, including jump, trend, period and dependency. It is urgently needed to clarify which indices should be used to quantify the degree of their variability. In this study, we defined the hydrological variability based on Hurst coefficient and Bartels statistic, and used Monte Carlo statistical tests to test and analyze their sensitivity to different variants. When the hydrological sequence had jump or trend variation, both Hurst coefficient and Bartels statistic could reflect the variation, with the Hurst coefficient being more sensitive to weak jump or trend variation. When the sequence had period, only the Bartels statistic could detect the mutation of the sequence. When the sequence had a dependency, both the Hurst coefficient and the Bartels statistics could reflect the variation, with the latter could detect weaker dependent variations. For the four variations, both the Hurst variability and Bartels variability increased with the increases of variation range. Thus, they could be used to measure the variation intensity of the hydrological sequence. We analyzed the temperature series of different weather stations in the Lancang River basin. Results showed that the temperature of all stations showed the upward trend or jump, indicating that the entire basin had experienced warming in recent years and the temperature variability in the upper and lower reaches was much higher. This case study showed the practicability of the proposed method.

Alternatives to SiOx for protective scan mirror coatings in remote sensing instruments

NASA Astrophysics Data System (ADS)

MacDonald, Michael E.

1999-09-01

Mirrors in remote sensing instruments require durable dielectric coatings, both to prevent oxidation of the reflective surface and to protect it during cleaning. IR absorption bands within widely-used SiOx coatings produce scene radiance and instrument background variations as a function of scan mirror angle which motivate the search for possible substitute materials. In this work several candidate coatings are evaluated including CeF3, HfO2, MgF2 SrF2, and Y2O3. This evaluation consists of reflectance, adhesion, and durability measurements of mirrors with an aluminum reflective surface over-coated with these materials. S-polarized and P- polarized reflectance measurements are presented between 2 and 20 micrometers for incidence angles between 40 and 50 degrees. This angular range is sufficient to scan the earth disk from geostationary orbit. Additional measurements at 45 degrees incidence are presented between 2 and 55 micrometers , covering the IR wavelength range of interest for earth radiation budget sensors. Comparisons are drawn with measurements of scan- mirror witness samples from the imaging and sounding instruments used in the Geostationary Operational Environmental Satellite (GOES). These witness samples exhibit reflectance variations arising from IR absorption bands in the SiOx protective coatings used in these mirrors. The spectral characteristics of several of the alternate materials are found to be quite attractive, however durable coatings of some of these materials require elevated deposition temperature which are incompatible with the nickel-coated beryllium scan mirror substrate construction used in GOES. This work present the achievable reflectance and durability of these alternate dielectric protective coatings at the deposition temperature constraints imposed by the scan mirror substrate. The prospects for substituting one of these coatings for SiOx are evaluated, and contrasted with the capability of radiometric calibration techniques to deal with the reflectance variations produced by SiOx coatings.

The MUCHFUSS photometric campaign

NASA Astrophysics Data System (ADS)

Schaffenroth, V.; Geier, S.; Heber, U.; Gerber, R.; Schneider, D.; Ziegerer, E.; Cordes, O.

2018-06-01

Hot subdwarfs (sdO/Bs) are the helium-burning cores of red giants, which have lost almost all of their hydrogen envelope. This mass loss is often triggered by common envelope interactions with close stellar or even substellar companions. Cool companions like late-type stars or brown dwarfs are detectable via characteristic light-curve variations like reflection effects and often also eclipses. To search for such objects, we obtained multi-band light curves of 26 close sdO/B binary candidates from the MUCHFUSS project with the BUSCA instrument. We discovered a new eclipsing reflection effect system (P = 0.168938 d) with a low-mass M dwarf companion (0.116 M⊙). Three more reflection effect binaries found in the course of the campaign have already been published; two of them are eclipsing systems, and in one system only showing the reflection effect but no eclipses, the sdB primary is found to be pulsating. Amongst the targets without reflection effect a new long-period sdB pulsator was discovered and irregular light variations were found in two sdO stars. The found light variations allowed us to constrain the fraction of reflection effect binaries and the substellar companion fraction around sdB stars. The minimum fraction of reflection effect systems amongst the close sdB binaries might be greater than 15% and the fraction of close substellar companions in sdB binaries may be as high as 8.0%. This would result in a close substellar companion fraction to sdB stars of about 3%. This fraction is much higher than the fraction of brown dwarfs around possible progenitor systems, which are solar-type stars with substellar companions around 1 AU, as well as close binary white dwarfs with brown dwarf companions. This might suggest that common envelope interactions with substellar objects are preferentially followed by a hot subdwarf phase.

Time-course variation of statistics embedded in music: Corpus study on implicit learning and knowledge.

PubMed

Daikoku, Tatsuya

2018-01-01

Learning and knowledge of transitional probability in sequences like music, called statistical learning and knowledge, are considered implicit processes that occur without intention to learn and awareness of what one knows. This implicit statistical knowledge can be alternatively expressed via abstract medium such as musical melody, which suggests this knowledge is reflected in melodies written by a composer. This study investigates how statistics in music vary over a composer's lifetime. Transitional probabilities of highest-pitch sequences in Ludwig van Beethoven's Piano Sonata were calculated based on different hierarchical Markov models. Each interval pattern was ordered based on the sonata opus number. The transitional probabilities of sequential patterns that are musical universal in music gradually decreased, suggesting that time-course variations of statistics in music reflect time-course variations of a composer's statistical knowledge. This study sheds new light on novel methodologies that may be able to evaluate the time-course variation of composer's implicit knowledge using musical scores.

Unmanned Aerial Vehicle to Estimate Nitrogen Status of Turfgrasses

PubMed Central

Corniglia, Matteo; Gaetani, Monica; Grossi, Nicola; Magni, Simone; Migliazzi, Mauro; Angelini, Luciana; Mazzoncini, Marco; Silvestri, Nicola; Fontanelli, Marco; Raffaelli, Michele; Peruzzi, Andrea; Volterrani, Marco

2016-01-01

Spectral reflectance data originating from Unmanned Aerial Vehicle (UAV) imagery is a valuable tool to monitor plant nutrition, reduce nitrogen (N) application to real needs, thus producing both economic and environmental benefits. The objectives of the trial were i) to compare the spectral reflectance of 3 turfgrasses acquired via UAV and by a ground-based instrument; ii) to test the sensitivity of the 2 data acquisition sources in detecting induced variation in N levels. N application gradients from 0 to 250 kg ha-1 were created on 3 different turfgrass species: Cynodon dactylon x transvaalensis (Cdxt) ‘Patriot’, Zoysia matrella (Zm) ‘Zeon’ and Paspalum vaginatum (Pv) ‘Salam’. Proximity and remote-sensed reflectance measurements were acquired using a GreenSeeker handheld crop sensor and a UAV with onboard a multispectral sensor, to determine Normalized Difference Vegetation Index (NDVI). Proximity-sensed NDVI is highly correlated with data acquired from UAV with r values ranging from 0.83 (Zm) to 0.97 (Cdxt). Relating NDVI-UAV with clippings N, the highest r is for Cdxt (0.95). The most reactive species to N fertilization is Cdxt with a clippings N% ranging from 1.2% to 4.1%. UAV imagery can adequately assess the N status of turfgrasses and its spatial variability within a species, so for large areas, such as golf courses, sod farms or race courses, UAV acquired data can optimize turf management. For relatively small green areas, a hand-held crop sensor can be a less expensive and more practical option. PMID:27341674

Measuring spatial and temporal variation in surface moisture on a coastal beach with a near-infrared terrestrial laser scanner

NASA Astrophysics Data System (ADS)

Smit, Yvonne; Ruessink, Gerben; Brakenhoff, Laura B.; Donker, Jasper J. A.

2018-04-01

Wind-alone predictions of aeolian sand deposition on the most seaward coastal dune ridge often exceed measured deposition substantially. Surface moisture is a major factor limiting aeolian transport on sandy beaches, but existing measurement techniques cannot adequately characterize the spatial and temporal distribution of surface moisture content. Here, we present a new method for detecting surface moisture at high temporal and spatial resolution using a near-infrared terrestrial laser scanner (TLS), the RIEGL VZ-400. Because this TLS operates at a wavelength (1550 nm) near a water absorption band, TLS reflectance is an accurate parameter to measure surface moisture over its full range. Five days of intensive laser scanning were performed on a Dutch beach to illustrate the applicability of the TLS. Gravimetric surface moisture samples were used to calibrate the relation between reflectance and surface moisture. Results reveal a robust negative relation for the full range of possible surface moisture contents (0%-25%), with a correlation-coefficient squared of 0.85 and a root-mean-square error of 2.7%. This relation holds between 20 and 60 m from the TLS. Within this distance the TLS typically produces O (106-107) data points, which we averaged into surface moisture maps with a 1 × 1 m resolution. This grid size largely removes small reflectance disturbances induced by, for example, footprints or tire tracks, while retaining larger scale moisture trends.

Seismic evidence for arc segmentation, active magmatic intrusions and syn-rift fault system in the northern Ryukyu volcanic arc

NASA Astrophysics Data System (ADS)

Arai, Ryuta; Kodaira, Shuichi; Takahashi, Tsutomu; Miura, Seiichi; Kaneda, Yoshiyuki

2018-04-01

Tectonic and volcanic structures of the northern Ryukyu arc are investigated on the basis of multichannel seismic (MCS) reflection data. The study area forms an active volcanic front in parallel to the non-volcanic island chain in the eastern margin of the Eurasian plate and has been undergoing regional extension on its back-arc side. We carried out a MCS reflection experiment along two across-arc lines, and one of the profiles was laid out across the Tokara Channel, a linear bathymetric depression which demarcates the northern and central Ryukyu arcs. The reflection image reveals that beneath this topographic valley there exists a 3-km-deep sedimentary basin atop the arc crust, suggesting that the arc segment boundary was formed by rapid and focused subsidence of the arc crust driven by the arc-parallel extension. Around the volcanic front, magmatic conduits represented by tubular transparent bodies in the reflection images are well developed within the shallow sediments and some of them are accompanied by small fragments of dipping seismic reflectors indicating intruded sills at their bottoms. The spatial distribution of the conduits may suggest that the arc volcanism has multiple active outlets on the seafloor which bifurcate at crustal depths and/or that the location of the volcanic front has been migrating trenchward over time. Further distant from the volcanic front toward the back-arc (> 30 km away), these volcanic features vanish, and alternatively wide rift basins become predominant where rapid transitions from normal-fault-dominant regions to strike-slip-fault-dominant regions occur. This spatial variation in faulting patterns indicates complex stress regimes associated with arc/back-arc rifting in the northern Okinawa Trough.[Figure not available: see fulltext.

Model of Tooth Morphogenesis Predicts Carabelli Cusp Expression, Size, and Symmetry in Humans

PubMed Central

Hunter, John P.; Guatelli-Steinberg, Debbie; Weston, Theresia C.; Durner, Ryan; Betsinger, Tracy K.

2010-01-01

Background The patterning cascade model of tooth morphogenesis accounts for shape development through the interaction of a small number of genes. In the model, gene expression both directs development and is controlled by the shape of developing teeth. Enamel knots (zones of nonproliferating epithelium) mark the future sites of cusps. In order to form, a new enamel knot must escape the inhibitory fields surrounding other enamel knots before crown components become spatially fixed as morphogenesis ceases. Because cusp location on a fully formed tooth reflects enamel knot placement and tooth size is limited by the cessation of morphogenesis, the model predicts that cusp expression varies with intercusp spacing relative to tooth size. Although previous studies in humans have supported the model's implications, here we directly test the model's predictions for the expression, size, and symmetry of Carabelli cusp, a variation present in many human populations. Methodology/Principal Findings In a dental cast sample of upper first molars (M1s) (187 rights, 189 lefts, and 185 antimeric pairs), we measured tooth area and intercusp distances with a Hirox digital microscope. We assessed Carabelli expression quantitatively as an area in a subsample and qualitatively using two typological schemes in the full sample. As predicted, low relative intercusp distance is associated with Carabelli expression in both right and left samples using either qualitative or quantitative measures. Furthermore, asymmetry in Carabelli area is associated with asymmetry in relative intercusp spacing. Conclusions/Significance These findings support the model's predictions for Carabelli cusp expression both across and within individuals. By comparing right-left pairs of the same individual, our data show that small variations in developmental timing or spacing of enamel knots can influence cusp pattern independently of genotype. Our findings suggest that during evolution new cusps may first appear as a result of small changes in the spacing of enamel knots relative to crown size. PMID:20689576

SU-E-T-171: Evaluation of the Analytical Anisotropic Algorithm in a Small Finger Joint Phantom Using Monte Carlo Simulation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chow, J; Owrangi, A; Jiang, R

2014-06-01

Purpose: This study investigated the performance of the anisotropic analytical algorithm (AAA) in dose calculation in radiotherapy concerning a small finger joint. Monte Carlo simulation (EGSnrc code) was used in this dosimetric evaluation. Methods: Heterogeneous finger joint phantom containing a vertical water layer (bone joint or cartilage) sandwiched by two bones with dimension 2 × 2 × 2 cm{sup 3} was irradiated by the 6 MV photon beams (field size = 4 × 4 cm{sup 2}). The central beam axis was along the length of the bone joint and the isocenter was set to the center of the joint. Themore » joint width and beam angle were varied from 0.5–2 mm and 0°–15°, respectively. Depth doses were calculated using the AAA and DOSXYZnrc. For dosimetric comparison and normalization, dose calculations were repeated in water phantom using the same beam geometry. Results: Our AAA and Monte Carlo results showed that the AAA underestimated the joint doses by 10%–20%, and could not predict joint dose variation with changes of joint width and beam angle. The calculated bone dose enhancement for the AAA was lower than Monte Carlo and the depth of maximum dose for the phantom was smaller than that for the water phantom. From Monte Carlo results, there was a decrease of joint dose as its width increased. This reflected the smaller the joint width, the more the bone scatter contributed to the depth dose. Moreover, the joint dose was found slightly decreased with an increase of beam angle. Conclusion: The AAA could not handle variations of joint dose well with changes of joint width and beam angle based on our finger joint phantom. Monte Carlo results showed that the joint dose decreased with increase of joint width and beam angle. This dosimetry comparison should be useful to radiation staff in radiotherapy related to small bone joint.« less

Preliminary measurements of spectral signatures of tropical and temperate plants in the thermal infrared

NASA Technical Reports Server (NTRS)

Salisbury, John W.; Milton, N. M.

1987-01-01

Spectral reflectance measurements of seven tropical species and six deciduous species were carried out in thermal infrared to establish the species-dependent spectral characteristics and to investigate the effect on spectral signatures of environmental variables, such as leaf maturity, drought, and metal stress. Seasonal variations of spectral signatures occurred between spring and summer leaves, but such variations were minimal during summer and early fall. Overall reflectance of senescent leaves was higher than that of young leaves, as was the reflectance of leaves from trees growing in metal-enriched soils, as compared with leaves from the control area. However, the characteristic spectral features were not changed in either case. It was also found that water stress did not have any effect on the infrared signatures: trees grown during a drought season maintained their characteristic spectral signatures.

OSOAA: A Vector Radiative Transfer Model of Coupled Atmosphere-Ocean System for a Rough Sea Surface Application to the Estimates of the Directional Variations of the Water Leaving Reflectance to Better Process Multi-angular Satellite Sensors Data Over the Ocean

NASA Technical Reports Server (NTRS)

Chami, Malik; LaFrance, Bruno; Fougnie, Bertrand; Chowdhary, Jacek; Harmel, Tristan; Waquet, Fabien

2015-01-01

In this study, we present a radiative transfer model, so-called OSOAA, that is able to predict the radiance and degree of polarization within the coupled atmosphere-ocean system in the presence of a rough sea surface. The OSOAA model solves the radiative transfer equation using the successive orders of scattering method. Comparisons with another operational radiative transfer model showed a satisfactory agreement within 0.8%. The OSOAA model has been designed with a graphical user interface to make it user friendly for the community. The radiance and degree of polarization are provided at any level, from the top of atmosphere to the ocean bottom. An application of the OSOAA model is carried out to quantify the directional variations of the water leaving reflectance and degree of polarization for phytoplankton and mineral-like dominated waters. The difference between the water leaving reflectance at a given geometry and that obtained for the nadir direction could reach 40%, thus questioning the Lambertian assumption of the sea surface that is used by inverse satellite algorithms dedicated to multi-angular sensors. It is shown as well that the directional features of the water leaving reflectance are weakly dependent on wind speed. The quantification of the directional variations of the water leaving reflectance obtained in this study should help to correctly exploit the satellite data that will be acquired by the current or forthcoming multi-angular satellite sensors.

Variational theory of the tapered impedance transformer

NASA Astrophysics Data System (ADS)

Erickson, Robert P.

2018-02-01

Superconducting amplifiers are key components of modern quantum information circuits. To minimize information loss and reduce oscillations, a tapered impedance transformer of new design is needed at the input/output for compliance with other 50 Ω components. We show that an optimal tapered transformer of length ℓ, joining the amplifier to the input line, can be constructed using a variational principle applied to the linearized Riccati equation describing the voltage reflection coefficient of the taper. For an incident signal of frequency ωo, the variational solution results in an infinite set of equivalent optimal transformers, each with the same form for the reflection coefficient, each able to eliminate input-line reflections. For the special case of optimal lossless transformers, the group velocity vg is shown to be constant, with characteristic impedance dependent on frequency ωc = πvg/ℓ. While these solutions inhibit input-line reflections only for frequency ωo, a subset of optimal lossless transformers with ωo significantly detuned from ωc does exhibit a wide bandpass. Specifically, by choosing ωo → 0 (ωo → ∞), we obtain a subset of optimal low-pass (high-pass) lossless tapers with bandwidth (0, ˜ ωc) [(˜ωc, ∞)]. From the subset of solutions, we derive both the wide-band low-pass and high-pass transformers, and we discuss the extent to which they can be realized given fabrication constraints. In particular, we demonstrate the superior reflection response of our high-pass transformer when compared to other taper designs. Our results have application to amplifiers, transceivers, and other components sensitive to impedance mismatch.

Spectralon solar diffuser BRDF variation for NPP, JPSS J1 and J2

NASA Astrophysics Data System (ADS)

Murgai, Vijay; Johnson, Lindsay; Klein, Staci

2017-09-01

The Visible/Infrared Imaging Radiometer Suite (VIIRS) is a key sensor on the Suomi National Polar-orbiting Partnership (NPP) satellite as well as the upcoming Joint Polar Satellite System (JPSS). VIIRS collects Earth radiometric and imagery data in 22 spectral bands from 0.4 to 12.5 μm. Radiometric calibration of the reflective bands in the 0.4 to 2.5 μm wavelength range is performed by measuring the sunlight reflectance from Spectralon®. Reflected sun light is directly proportional to the Bidirectional Reflectance Distribution Function (BRDF) of the Spectralon. This paper presents the BRDF measurements of the Spectralon for JPSS J2 in the 0.4 - 1.63 μm wavelength using PASCAL (Polarization And Scatter Characterization Analysis of Lambertian materials) with an uncertainty better than 1.2%. PASCAL makes absolute measurements of the BRDF in an analogous fashion to the National Institute of Standards and Technology (NIST) Spectral Tri-function Automated Reflectance Reflectometer (STARR) facility. Unique additional features of this instrument include the ability to vary the sample elevation and roll / clock the sample about its normal, allowing measurement of BRDF in the as used geometry. Comparison of BRDF in the as used configuration for NPP, J1, and J2 shows variation of up to 3%. The sign of the change from panel to panel depends on the angle of incidence and view angle. The results demonstrate lot to lot variability in Spectralon and emphasize the necessity of characterizing each panel. A pattern in the BRDF variation is also presented.

Do Different Modalities of Reflection Matter? An Exploration of Adult Second-Language Learners' Reported Strategy Use and Oral Language Production

ERIC Educational Resources Information Center

Huang, Li-Shih

2010-01-01

This paper reports on a small-scale study that was the first to explore raising second-language (L2) learners' awareness of speaking strategies as mediated by three modalities of task-specific reflection--individual written reflection, individual spoken reflection, and group spoken reflection. Though research in such areas as L2 writing, teacher's…

Optical method for the determination of stress in thin films

DOEpatents

Maris, H.J.

1999-01-26

A method and optical system is disclosed for measuring an amount of stress in a film layer disposed over a substrate. The method includes steps of: (A) applying a sequence of optical pump pulses to the film layer, individual ones of said optical pump pulses inducing a propagating strain pulse in the film layer, and for each of the optical pump pulses, applying at least one optical probe pulse, the optical probe pulses being applied with different time delays after the application of the corresponding optical probe pulses; (B) detecting variations in an intensity of a reflection of portions of the optical probe pulses, the variations being due at least in part to the propagation of the strain pulse in the film layer; (C) determining, from the detected intensity variations, a sound velocity in the film layer; and (D) calculating, using the determined sound velocity, the amount of stress in the film layer. In one embodiment of this invention the step of detecting measures a period of an oscillation in the intensity of the reflection of portions of the optical probe pulses, while in another embodiment the step of detecting measures a change in intensity of the reflection of portions of the optical probe pulses and determines a time at which the propagating strain pulse reflects from a boundary of the film layer. 16 figs.

Optical method for the determination of stress in thin films

DOEpatents

Maris, Humphrey J.

1999-01-01

A method and optical system is disclosed for measuring an amount of stress in a film layer disposed over a substrate. The method includes steps of: (A) applying a sequence of optical pump pulses to the film layer, individual ones of said optical pump pulses inducing a propagating strain pulse in the film layer, and for each of the optical pump pulses, applying at least one optical probe pulse, the optical probe pulses being applied with different time delays after the application of the corresponding optical probe pulses; (B) detecting variations in an intensity of a reflection of portions of the optical probe pulses, the variations being due at least in part to the propagation of the strain pulse in the film layer; (C) determining, from the detected intensity variations, a sound velocity in the film layer; and (D) calculating, using the determined sound velocity, the amount of stress in the film layer. In one embodiment of this invention the step of detecting measures a period of an oscillation in the intensity of the reflection of portions of the optical probe pulses, while in another embodiment the step of detecting measures a change in intensity of the reflection of portions of the optical probe pulses and determines a time at which the propagating strain pulse reflects from a boundary of the film layer.

Synthesis of amplitude-versus-offset variations in ground-penetrating radar data

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zeng, X.; McMechan, G.A.; Xu, T.

2000-02-01

To evaluate the importance of amplitude-versus-offset information in the interpretation of ground-penetrating radar (GPR) data, GPR reflections are synthesized as a function of antenna separation using a 2.5-D Finite-difference solution of Maxwell's equations. The conductivity, the complex dielectric permittivity,and the complex magnetic permeability are varied systematically in nine suites of horizontally layered models. The source used is a horizontal transverse-electric dipole situated at the air-earth interface. Cole-Cole relaxation mechanisms define the frequency dependence of the media. Reflection magnitudes and their variations with antenna separation differ substantially, depending on the contrast in electromagnetic properties that caused the reflection. The spectral charactermore » of the dielectric and magnetic relaxations produces only second-order variations in reflection coefficients compared with those associated with contrasts in permittivity, conductivity, and permeability, so they may not be separable even when they are detected. In typical earth materials, attenuation of propagating GPR waves is influenced most strongly by conductivity, followed by dielectric relaxation, followed by magnetic relaxation. A pervasive feature of the simulated responses is locally high amplitude associated with the critical incident angle at the air-earth interface in the antenna radiation pattern. Full wavefield simulations of two field data sets from a fluvial/eolian environment are able to reproduce the main amplitude behaviors observed in the data.« less

The implications of variable remigration intervals for the assessment of population size in marine turtles.

PubMed

Hays, G C

2000-09-21

Sea turtles nest on sandy beaches and tend to show high fidelity to specific nesting areas, but, despite this fidelity, the inter-annual variation in nesting numbers may be large. This variation may reflect the fact that turtles do not usually nest in consecutive years. Here, theoretical models are developed in which the interval between successive nesting years (the remigration interval) reflects conditions encountered on the feeding grounds, with good feeding years leading to a reduction in the remigration interval and vice versa. These simple models produce high levels of inter-annual variation in nesting numbers with, on occasion, almost no turtles nesting in some years even when the population is large and stable. The implications for assessing the size of sea turtle populations are considered. Copyright 2000 Academic Press.

Microclimatic variation in UV perception and related disparity in tropane and quinolizidine alkaloid composition of Atropa acuminata, Lupinus polyphyllus and Hyoscyamus niger.

PubMed

Jan, Sumira; Kamili, Azra N; Parray, Javid A; Bedi, Yashbir S; Ahmad, Parvaiz

2016-08-01

The aim of current research was to evaluate the physiological adjustment in three medicinal herbs viz., Atropa acuminata, Lupinus polyphyllus and Hyoscyamus niger to the winter period characterised by intense UV flux in Kashmir valley across the North Western Himalaya. Quinolizidine (QA) and tropane alkaloid (TA) concentrations were analysed in these herbs thriving at two different altitudes via GC-MS and correlated by PCA analysis. This study investigated the hypothesis that UV reflectance and absorbance at low temperatures are directly related to disparity in alkaloid accumulation. Among QAs in L. polyphyllus, ammodendrine and lupanine accumulated at higher concentration and exhibited significant variation of 186.36% and 95.91% in ammodendrine and lupanine respectively in both sites. Tetrahydrohombifoline displayed non-significant variation of about 9.60% irrespective of sites. Among tropane alkaloid (TA), hyoscyamine was recorded as the most abundant constituent irrespective of the plant and site while apotropine accumulated in lesser quantity in A. acuminata than H. niger. However, apotropine demonstrated significant variation of 175% among both sites. The final concentration of quinolizidine (QA) and tropane alkaloid (TA) reflects the interplay between reflectance and absorbance of UV radiation response field. These findings suggest that spectral response of UV light contributes directly to alkaloid biosynthesis. Copyright © 2016 Elsevier B.V. All rights reserved.

Evidence for a population bottleneck in an Apicomplexan parasite of caribou and reindeer, Besnoitia tarandi

USDA-ARS?s Scientific Manuscript database

The evolutionary history and epidemiology of parasites may be reflected in the extent and geographic distribution of their genetic variation. Among coccidian parasites, the population structure of only Toxoplasma gondii has been extensively examined. Intraspecific variation in other coccidia, for ...

Active-optical reflectance sensing evaluated for red and red-edge waveband sensitivity

USDA-ARS?s Scientific Manuscript database

Uncertainty exists with corn (Zea mays L.) N management due to year-to-year variation in crop N need, soil N supply, and N loss from leaching, volatilization, and denitrification. Active-optical reflectance sensing (AORS) has proven effective in some fields for generating N fertilizer recommendation...

Slow-light enhanced subwavelength plasmonic waveguide refractive index sensors.

PubMed

Huang, Yin; Min, Changjun; Dastmalchi, Pouya; Veronis, Georgios

2015-06-01

We introduce slow-light enhanced subwavelength scale refractive index sensors which consist of a plasmonic metal-dielectric-metal (MDM) waveguide based slow-light system sandwiched between two conventional MDM waveguides. We first consider a MDM waveguide with small width structrue for comparison, and then consider two MDM waveguide based slow light systems: a MDM waveguide side-coupled to arrays of stub resonators system and a MDM waveguide side-coupled to arrays of double-stub resonators system. We find that, as the group velocity decreases, the sensitivity of the effective index of the waveguide mode to variations of the refractive index of the fluid filling the sensors as well as the sensitivities of the reflection and transmission coefficients of the waveguide mode increase. The sensing characteristics of the slow-light waveguide based sensor structures are systematically analyzed. We show that the slow-light enhanced sensors lead to not only 3.9 and 3.5 times enhancements in the refractive index sensitivity, and therefore in the minimum detectable refractive index change, but also to 2 and 3 times reductions in the required sensing length, respectively, compared to a sensor using a MDM waveguide with small width structure.

Real-Time Polymerase Chain Reaction for Detection of Schistosoma DNA in Small-Volume Urine Samples Reflects Focal Distribution of Urogenital Schistosomiasis in Primary School Girls in KwaZulu Natal, South Africa

PubMed Central

Pillay, Pavitra; Taylor, Myra; Zulu, Siphosenkosi G.; Gundersen, Svein G.; Verweij, Jaco J.; Hoekstra, Pytsje; Brienen, Eric A. T.; Kleppa, Elisabeth; Kjetland, Eyrun F.; van Lieshout, Lisette

2014-01-01

Schistosoma haematobium eggs and Schistosoma DNA levels were measured in urine samples from 708 girls recruited from 18 randomly sampled primary schools in South Africa. Microscopic analysis of two 10-mL urine subsamples collected on three consecutive days confirmed high day-to-day variation; 103 (14.5%) girls had positive results at all six examinations, and at least one positive sample was seen in 225 (31.8%) girls. Schistosoma-specific DNA, which was measured in a 200-μL urine subsample by using real-time polymerase chain reaction, was detected in 180 (25.4%) cases, and levels of DNA corresponded significantly with average urine egg excretion. In concordance with microscopic results, polymerase chain reaction results were significantly associated with history of gynecologic symptoms and confirmed highly focal distribution of urogenital schistosomiasis. Parasite-specific DNA detection has a sensitivity comparable to single urine microscopy and could be used as a standardized high-throughput procedure to assess distribution of urogenital schistosomiasis in relatively large study populations by using small sample volumes. PMID:24470560

Crustal evolution inferred from Apollo magnetic measurements

NASA Technical Reports Server (NTRS)

Dyal, P.; Daily, W. D.; Vanian, L. L.

1978-01-01

The topology of lunar remanent fields is investigated by analyzing simultaneous magnetometer and solar wind spectrometer data. The diffusion model proposed by Vanyan (1977) to describe the field-plasma interaction at the lunar surface is extended to describe the interaction with fields characterized by two scale lengths, and the extended model is compared with data from three Apollo landing sites (Apollo 12, 15 and 16) with crustal fields of differing intensity and topology. Local remanent field properties from this analysis are compared with high spatial resolution magnetic maps obtained from the electron reflection experiment. It is concluded that remanent fields over most of the lunar surface are characterized by spatial variations as small as a few kilometers. Large regions (50 to 100 km) of the lunar crust were probably uniformly magnetized early in the evolution of the crust. Smaller scale (5 to 10 km) magnetic sources close to the surface were left by bombardment and subsequent gardening of the upper layers of these magnetized regions. The small scale sized remanent fields of about 100 gammas are measured by surface experiments, whereas the larger scale sized fields of about 0.1 gammas are measured by the orbiting subsatellite experiments.

BOREAS TE-9 In Situ Understory Spectral Reflectance Within the NSA

NASA Technical Reports Server (NTRS)

Hall, Forrest G. (Editor); Curd, Shelaine (Editor); Supronowicz, Jan; Edwards, Geoffrey; Viau, Alain; Thomson, Keith

2000-01-01

The Boreal Ecosystem-Atmospheric Study (BOREAS) TE-9 (Terrestrial Ecology) team collected several data sets related to chemical and photosynthetic properties of leaves in boreal forest tree species. Spectral reflection coefficients of the forest understory at the ground level, in three boreal forest sites of Northern Manitoba (56 N latitude and 98 W longitude), were obtained and analyzed in 1994. In particular, angular variation of the reflection coefficients in the old jack pine and young jack pine forests, as well as nadir reflection coefficient in the young aspen forest, were investigated. The complexity of understory composition and the light patterns limited quantitative conclusions; however, a number of interesting trends in the behavior of the measured values can be inferred. In particular, the unique spectral profiles of lichens show very strongly in the old jack pine understory, yet are definitely less conspicuous for young jack pine, and virtually absent in the aspen forest. The angular variation of the reflection coefficient by the young pine understory seems to be significantly toned down by fine-structured branches and their shadows. Our study also indicates how difficult the ground reflection coefficient problem in a forest is, compared to certain previously investigated areas that have a more uniform appearance, such as prairie grassland, bare soil, or agricultural crops. This is due to several factors, generally typical of a forest environment, that may influence the overall understory reflection coefficient, including: (1) a strong diversity of the forest floor due to the presence of dead tree trunks, holes in the ground, patches of different types of vegetation or litter, etc.; (2) pronounced 3-D structures at the ground level, such as shrubs, bushes, and young trees; and (3) an irregular shadow mosaic, which not only varies with the time of the day, causing intensity variations, but likely also effectively modifies the spectrum of the illuminating light and hence the reflection coefficient signal as well The data are stored in tabular ASCII files. The data files are available on a CD-ROM (see document number 20010000884), or from the Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC).

Relationship between leaf optical properties, chlorophyll fluorescence and pigment changes in senescing Acer saccharum leaves.

PubMed

Junker, Laura Verena; Ensminger, Ingo

2016-06-01

The ability of plants to sequester carbon is highly variable over the course of the year and reflects seasonal variation in photosynthetic efficiency. This seasonal variation is most prominent during autumn, when leaves of deciduous tree species such as sugar maple (Acer saccharum Marsh.) undergo senescence, which is associated with downregulation of photosynthesis and a change of leaf color. The remote sensing of leaf color by spectral reflectance measurements and digital repeat images is increasingly used to improve models of growing season length and seasonal variation in carbon sequestration. Vegetation indices derived from spectral reflectance measurements and digital repeat images might not adequately reflect photosynthetic efficiency of red-senescing tree species during autumn due to the changes in foliar pigment content associated with autumn phenology. In this study, we aimed to assess how effectively several widely used vegetation indices capture autumn phenology and reflect the changes in physiology and photosynthetic pigments during autumn. Chlorophyll fluorescence and pigment content of green, yellow, orange and red leaves were measured to represent leaf senescence during autumn and used as a reference to validate and compare vegetation indices derived from leaf-level spectral reflectance measurements and color analysis of digital images. Vegetation indices varied in their suitability to track the decrease of photosynthetic efficiency and chlorophyll content despite increasing anthocyanin content. Commonly used spectral reflectance indices such as the normalized difference vegetation index and photochemical reflectance index showed major constraints arising from a limited representation of gradual decreases in chlorophyll content and an influence of high foliar anthocyanin levels. The excess green index and green-red vegetation index were more suitable to assess the process of senescence. Similarly, digital image analysis revealed that vegetation indices such as Hue and normalized difference index are superior compared with the often-used green chromatic coordinate. We conclude that indices based on red and green color information generally represent autumn phenology most efficiently. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Assessment of BRDF effect of Kunlun Mountain glacier on Tibetan Plateau as a potential pseudo-invariant calibration site

NASA Astrophysics Data System (ADS)

Wang, Ling; Hu, Xiuqing; Chen, Lin

2017-09-01

Calibration is a critical step to ensure data quality and to meet the requirement of quantitative remote sensing in a broad range of scientific applications. One of the least expensive and increasingly popular methods of on-orbit calibration is the use of pseudo invariant calibration sites (PICS). A spatial homogenous and temporally stable area of 34 km2 in size around the center of Kunlun Mountain (KLM) over Tibetan Plateau (TP) was identified by our previous study. The spatial and temporal coefficient of variation (CV) this region was better than 4% for the reflective solar bands. In this study, the BRDF impacts of KLM glacier on MODIS observed TOA reflectance in band 1 (659 nm) are examined. The BRDF impact of KLM glacier with respect to the view zenith angle is studied through using the observations at a fixed solar zenith angle, and the effect with respect to the sun zenith angle is studied based on the observations collected at the same view angle. Then, the two widely used BRDF models are applied to our test data to simulate the variations of TOA reflectance due to the changes in viewing geometry. The first one is Ross-Li model, which has been used to produce the MODIS global BRDF albedo data product. The second one is snow surface BRDF model, which has been used to characterize the bidirectional reflectance of Antarctic snow. Finally, the accuracy and effectiveness of these two different BRDF models are tested through comparing the model of simulated TOA reflectance with the observed one. The results show that variations of the reflectances at a fixed solar zenith angle are close to the lambertian pattern, while those at a fixed sensor zenith angle are strongly anisotropic. A decrease in solar zenith angle from 50º to 20º causes an increase in reflectance by the level of approximated 50%. The snow surface BRDF model performs much better than the Ross-Li BRDF model to re-produce the Bi-Directional Reflectance of KLM glacier. The RMSE of snow surface BRDF model is 3.60%, which is only half of the RMSE when using Ross-Li model.

Seasonal and interannual variations of atmospheric CO2 and climate

NASA Astrophysics Data System (ADS)

Dettinger, Michael D.; Ghil, Michael

1998-02-01

Interannual variations of atmospheric CO2 concentrations at Mauna Loa are almost masked by the seasonal cycle and a strong trend; at the South Pole, the seasonal cycle is small and is almost lost in the trend and interannual variations. Singular-spectrum analysis (SSA) is used here to isolate and reconstruct interannual signals at both sites and to visualize recent decadal changes in the amplitude and phase of the seasonal cycle. Analysis of the Mauna Loa CO2 series illustrates a hastening of the CO2 seasonal cycle, a close temporal relation between Northern Hemisphere (NH) mean temperature trends and the amplitude of the seasonal CO2 cycle, and tentative ties between the latter and seasonality changes in temperature over the NH continents. Variations of the seasonal CO2 cycle at the South Pole differ from those at Mauna Loa: it is phase changes of the seasonal cycle at the South Pole, rather than amplitude changes, that parallel hemispheric and global temperature trends. The seasonal CO2 cycles exhibit earlier occurrences of the seasons by 7days at Mauna Loa and 18days at the South Pole. Interannual CO2 variations are shared at the two locations, appear to respond to tropical processes, and can be decomposed mostly into two periodicities, around (3years)1 and (4years)1, respectively. Joint SSA analyses of CO2 concentrations and tropical climate indices isolate a shared mode with a quasi-triennial (QT) period in which the CO2 and sea-surface temperature (SST) participation are in phase opposition. The other shared mode has a quasi-quadrennial (QQ) period and CO2 variations are in phase with the corresponding tropical SST variations throughout the tropics. Together these interannual modes exhibit a mean lag between tropical SSTs and CO2 variations of about 6 8months, with SST leading. Analysis of the QT and QQ signals in global gridded SSTs, joint SSA of CO2 and δ13C isotopic ratios, and SSA of CO2 and NH-land temperatures indicate that the QT variations in CO2 mostly reflect upwelling variations in the eastern tropical Pacific. QQ variations are dominated by the CO2 signature of terrestrial-ecosystem response to global QQ climate variations. Climate variations associated with these two interannual components of tropical variability have very different effects on global climate and, especially, on terrestrial ecosystems and the carbon cycle.

Female fecundity variation affects reproducibility of experiments on host plant preference and acceptance in a phytophagous insect

PubMed Central

Schäpers, Alexander; Petrén, Hampus; Wheat, Christopher W.; Wiklund, Christer

2017-01-01

Reproducibility is a scientific cornerstone. Many recent studies, however, describe a reproducibility crisis and call for assessments of reproducibility across scientific domains. Here, we explore the reproducibility of a classic ecological experiment—that of assessing female host plant preference and acceptance in phytophagous insects, a group in which host specialization is a key driver of diversification. We exposed multiple cohorts of Pieris napi butterflies from the same population to traditional host acceptance and preference tests on three Brassicaceae host species. Whereas the host plant rank order was highly reproducible, the propensity to oviposit on low-ranked hosts varied significantly even among cohorts exposed to similar conditions. Much variation could be attributed to among-cohort variation in female fecundity, a trait strongly correlated both to female size and to the size of the nuptial gift a female receives during mating. Small males provide small spermatophores, and in our experiment small females that mated with small males had a disproportionally low propensity to oviposit on low-ranked hosts. Hence, our results provide empirical support to the theoretical prediction that female host utilization is strongly affected by non-genetic, environmental variation, and that such variation can affect the reproducibility of ecological experiments even under seemingly identical conditions. PMID:28202813

Very small IF resonator filters using reflection of shear horizontal wave at free edges of substrate.

PubMed

Kadota, Michio; Ago, Junya; Horiuchi, Hideya; Ikeura, Mamoru

2002-09-01

A shear horizontal (SH) wave has the characteristic of complete reflection at the free edges of a substrate with a large dielectric constant. A conventional surface acoustic wave (SAW) resonator filter requires reflectors consisting of numerous grating fingers on both sides of interdigital transducers (IDTs). On the contrary, it is considered that small-sized and low loss resonator filters without reflectors consisting of grating fingers can be realized by exploiting this characteristic of the SH wave or the Bleustein-Gulyaev-Shimizu (BGS) wave. There are two types of resonator filters: transversely coupled and longitudinally coupled. No transversely coupled filters (neither conventional nor edge-reflection) using the SH wave on a single-crystal substrate have been realized until now, because two transverse modes (symmetrical and asymmetrical modes) are not easily coupled. However, the authors have realized small low loss transversely coupled resonator filters in the range of 25 to 52 MHz using edge reflections of the BGS wave on piezoelectric ceramic (PZT: Pb(Zr,Ti)O3) substrates for the first time by developing methods by which the two transverse modes could be coupled. On the other hand, longitudinally coupled resonator filters using edge reflection of the SH or BGS wave always have large spurious responses because of the even modes in the out-of-band range, because the frequencies of even modes do not coincide with the nulls of the frequency spectra of the IDTs. Consequently, longitudinally coupled resonator filters using the edge reflection of the SH wave have not been realized. By developing a method of reducing the spurious responses without increasing of the insertion loss, the authors have realized small low loss longitudinally coupled resonator filters in the range of 40 to 190 MHz using edge reflection of BGS or SH waves on PZT or 36 degrees-rotated-Y X-propagation LiTaO3 substrates for the first time. Despite being intermediate frequency (IF) filters, their package (3 x 3 x 1.03 mm3) sizes are as small as those of radio frequency (RF) SAW filters.

Differential rotation in magnetic chemically peculiar stars

NASA Astrophysics Data System (ADS)

Mikulášek, Z.; Krtička, J.; Paunzen, E.; Švanda, M.; Hummerich, S.; Bernhard, K.; Jagelka, M.; Janík, J.; Henry, G. W.; Shultz, M. E.

2018-01-01

Magnetic chemically peculiar (mCP) stars constitute about 10% of upper-main-sequence stars and are characterized by strong magnetic fields and abnormal photospheric abundances of some chemical elements. Most of them exhibit strictly periodic light, magnetic, radio, and spectral variations that can be fully explained by a rigidly rotating main-sequence star with persistent surface structures and a stable global magnetic field. Long-term observations of the phase curves of these variations enable us to investigate possible surface differential rotation with unprecedented accuracy and reliability. The analysis of the phase curves in the best-observed mCP stars indicates that the location and the contrast of photometric and spectroscopic spots as well as the geometry of the magnetic field remain constant for at least many decades. The strict periodicity of mCP variables supports the concept that the outer layers of upper-main-sequence stars do not rotate differentially. However, there is a small, inhomogeneous group consisting of a few mCP stars whose rotation periods vary on timescales of decades. The period oscillations may reflect real changes in the angular velocity of outer layers of the stars which are anchored by their global magnetic fields. In CU Vir, V901 Ori, and perhaps BS Cir, the rotational period variation indicates the presence of vertical differential rotation; however, its exact nature has remained elusive until now. The incidence of mCP stars with variable rotational periods is currently investigated using a sample of fifty newly identified Kepler mCP stars.

Morphological analysis of Trichomycterus areolatus Valenciennes, 1846 from southern Chilean rivers using a truss-based system (Siluriformes, Trichomycteridae)

PubMed Central

Colihueque, Nelson; Corrales, Olga; Yáñez, Miguel

2017-01-01

Abstract Trichomycterus areolatus Valenciennes, 1846 is a small endemic catfish inhabiting the Andean river basins of Chile. In this study, the morphological variability of three T. areolatus populations, collected in two river basins from southern Chile, was assessed with multivariate analyses, including principal component analysis (PCA) and discriminant function analysis (DFA). It is hypothesized that populations must segregate morphologically from each other based on the river basin that they were sampled from, since each basin presents relatively particular hydrological characteristics. Significant morphological differences among the three populations were found with PCA (ANOSIM test, r = 0.552, p < 0.0001) and DFA (Wilks’s λ = 0.036, p < 0.01). PCA accounted for a total variation of 56.16% by the first two principal components. The first Principal Component (PC1) and PC2 explained 34.72 and 21.44% of the total variation, respectively. The scatter-plot of the first two discriminant functions (DF1 on DF2) also validated the existence of three different populations. In group classification using DFA, 93.3% of the specimens were correctly-classified into their original populations. Of the total of 22 transformed truss measurements, 17 exhibited highly significant (p < 0.01) differences among populations. The data support the existence of T. areolatus morphological variation across different rivers in southern Chile, likely reflecting the geographic isolation underlying population structure of the species. PMID:29134012

Estimation of Sea Level variations with GPS/GLONASS-Reflectometry Technique: Case Study at Stationary Oceanographic Platform in the Black Sea

NASA Astrophysics Data System (ADS)

Kurbatov, G. A.; Padokhin, A. M.

2017-12-01

In the present work we study GNSS - reflectometry methods for estimation of sea level variations using a single GNSS-receiver, which are based on the multipath propagation effects (interference pattern in SNR of GNSS signals at small elevation angles) caused by the reflection of navigational signals from the sea surface. The measurements were carried out in the coastal zone of Black Sea at the Stationary Oceanographic Platform during one-week campaign in the summer 2017. GPS/GLONASS signals at two working frequencies of both systems were used to study sea level variations which almost doubled the amount of observations compared to GPS-only tide gauge. Moreover all the measurements were conducted with 4-antenna GNSS receiver providing the opportunity for different orientations of antennas including zenith and nadir looking ones as well as two horizontally oriented ones at different azimuths. As the reference we used data from co-located wire wave gauge which showed good correspondence of both datasets. Though tidal effects are not so pronounced for the Black Sea, the described experimental setup allowed to study the effects of sea surface roughness, driven by meteorological conditions (e.g. wind waves), as well as antenna directivity pattern effects on the observed interference patterns of GPS/GLONASS L1/L2 signals (relation of the main spectral peak to the noise power) and the quality of sea level estimations.

Temporal variation of phytoplankton in a small tropical crater lake, Costa Rica.

PubMed

Umaña-Villalobos, Gerardo

2010-12-01

The temporal variation in lake's phytoplankton is important to understand its general biodiversity. For tropical lakes, it has been hypothesized that they follow a similar pattern as temperate ones, on a much accelerated pace; nevertheless, few case studies have tried to elucidate this. Most studies in Costa Rica have used a monthly sampling scheme and failed in showing the expected changes. In this study, the phytoplankton of the small Barvas's crater lake was followed for more than three years, first with monthly and later with weekly samplings, that covered almost two years. Additional information on temperature and oxygen vertical profiles was obtained on a monthly basis, and surface temperature was measured during weekly samplings around noon. Results showed that in spite of its shallow condition (max. depth: 7m) and low surface temperature (11 to 19 degrees C), the lake stratifies at least for brief periods. The phytoplankton showed both, rapid change periods, and prolonged ones of relative stasis. The plankton composition fluctuated between three main phases, one characterized by the abundance of small sized desmids (Staurastrum paradoxum, Cosmarium asphaerosporum), a second phase dominated by equally small cryptomonads (Chryptochrysis minor, Chroomonas sp.) and a third phase dominated by the green alga Eutetramorus tetrasporus. Although data evidenced that monthly sampling could miss short term events, the temporal variation did not follow the typical dry and rainy seasons of the region, or any particular annual pattern. Year to year variation was high. As this small lake is located at the summit of Barva Volcano and receives the influence from both the Caribbean and the Pacific weather, seasonality at the lake is not clearly defined as in the rest of the country and short term variations in the local weather might have a stronger effect than broad seasonal trends. The occurrence of this short term changes in the phytoplankton of small tropical lakes in response to weather variations needs to be further explored in other lakes.

Effect of reflected ions on the formation of the structure of interplanetary quasi-perpendicular shocks for Mach numbers lower than the first critical mach number

NASA Astrophysics Data System (ADS)

Eselevich, V. G.; Borodkova, N. L.; Sapunova, O. V.; Zastenker, G. N.; Yermolaev, Yu. I.

2017-11-01

Based on the data of the BMSW instrument installed on the of SPEKTR-R spacecraft, as well as according to the data of instruments of the WIND spacecraft, etc., using two examples, the paper has studied the role of ions reflected from the front and associated structural features of quasi-perpendicular interplanetary shocks (IS) with the Alfvén Mach number M A lower than the first critical Mach number M c1 . It has been shown that BSs with the finite parameter 0.1 < β1 < 1 contain a small fraction of reflected protons, which play a significant role in forming the front structure (β1 is the ratio of gas-to-magnetic pressure before the shock front). In particular, in the case of a perpendicular shock recorded on August 24, 2013 (the angle between the magnetic field direction and the normal to the front θBn ≈ 85°), an IS with a small Mach number ( M A ≈ 1.4) and small β1 ≈ 0.2 is shown that the interactions of reflected ions with inflowing solar wind may result in the collisionless heating of ions in front of and behind it. The case of the oblique (θBn = 63°) IS on April 19, 2014 with a small Mach number ( M A ≈ 1.2) and small β1 ≈ 0.5 has been investigated. It has been found that, before the front, there is a sequence of trains of magnetosonic waves, the amplitude of which decreases to zero upon increasing their distance from the front. The mechanism of their formation is associated with the development of instability caused by the ions reflected from the front.

Mixing, diffusion, and percolation in binary supported membranes containing mixtures of lipids and amphiphilic block copolymers.

PubMed

Gettel, Douglas L; Sanborn, Jeremy; Patel, Mira A; de Hoog, Hans-Peter; Liedberg, Bo; Nallani, Madhavan; Parikh, Atul N

2014-07-23

Substrate-mediated fusion of small polymersomes, derived from mixtures of lipids and amphiphilic block copolymers, produces hybrid, supported planar bilayers at hydrophilic surfaces, monolayers at hydrophobic surfaces, and binary monolayer/bilayer patterns at amphiphilic surfaces, directly responding to local measures of (and variations in) surface free energy. Despite the large thickness mismatch in their hydrophobic cores, the hybrid membranes do not exhibit microscopic phase separation, reflecting irreversible adsorption and limited lateral reorganization of the polymer component. With increasing fluid-phase lipid fraction, these hybrid, supported membranes undergo a fluidity transition, producing a fully percolating fluid lipid phase beyond a critical area fraction, which matches the percolation threshold for the immobile point obstacles. This then suggests that polymer-lipid hybrid membranes might be useful models for studying obstructed diffusion, such as occurs in lipid membranes containing proteins.

Genetic and epigenetic control of metabolic health.

PubMed

Schwenk, Robert Wolfgang; Vogel, Heike; Schürmann, Annette

2013-09-25

Obesity is characterized as an excess accumulation of body fat resulting from a positive energy balance. It is the major risk factor for type 2 diabetes (T2D). The evidence for familial aggregation of obesity and its associated metabolic diseases is substantial. To date, about 150 genetic loci identified in genome-wide association studies (GWAS) are linked with obesity and T2D, each accounting for only a small proportion of the predicted heritability. However, the percentage of overall trait variance explained by these associated loci is modest (~5-10% for T2D, ~2% for BMI). The lack of powerful genetic associations suggests that heritability is not entirely attributable to gene variations. Some of the familial aggregation as well as many of the effects of environmental exposures, may reflect epigenetic processes. This review summarizes our current knowledge on the genetic basis to individual risk of obesity and T2D, and explores the potential role of epigenetic contribution.

Region effects influence local tree species diversity.

PubMed

Ricklefs, Robert E; He, Fangliang

2016-01-19

Global patterns of biodiversity reflect both regional and local processes, but the relative importance of local ecological limits to species coexistence, as influenced by the physical environment, in contrast to regional processes including species production, dispersal, and extinction, is poorly understood. Failure to distinguish regional influences from local effects has been due, in part, to sampling limitations at small scales, environmental heterogeneity within local or regional samples, and incomplete geographic sampling of species. Here, we use a global dataset comprising 47 forest plots to demonstrate significant region effects on diversity, beyond the influence of local climate, which together explain more than 92% of the global variation in local forest tree species richness. Significant region effects imply that large-scale processes shaping the regional diversity of forest trees exert influence down to the local scale, where they interact with local processes to determine the number of coexisting species.

Turbulence transition and the edge of chaos in pipe flow.

PubMed

Schneider, Tobias M; Eckhardt, Bruno; Yorke, James A

2007-07-20

The linear stability of pipe flow implies that only perturbations of sufficient strength will trigger the transition to turbulence. In order to determine this threshold in perturbation amplitude we study the edge of chaos which separates perturbations that decay towards the laminar profile and perturbations that trigger turbulence. Using the lifetime as an indicator and methods developed in Skufca et al., Phys. Rev. Lett. 96, 174101 (2006), we show that superimposed on an overall 1/Re scaling predicted and studied previously there are small, nonmonotonic variations reflecting folds in the edge of chaos. By tracing the motion in the edge we find that it is formed by the stable manifold of a unique flow field that is dominated by a pair of downstream vortices, asymmetrically placed towards the wall. The flow field that generates the edge of chaos shows intrinsic chaotic dynamics.

Synchrotron X-ray reciprocal-space mapping, topography and diffraction resolution studies of macromolecular crystal quality.

PubMed

Boggon, T J; Helliwell, J R; Judge, R A; Olczak, A; Siddons, D P; Snell, E H; Stojanoff, V

2000-07-01

A comprehensive study of microgravity and ground-grown chicken egg-white lysozyme crystals is presented using synchrotron X-ray reciprocal-space mapping, topography techniques and diffraction resolution. Microgravity crystals displayed reduced intrinsic mosaicities on average, but no differences in terms of strain over their ground-grown counterparts. Topographic analysis revealed that in the microgravity case the majority of the crystal was contributing to the peak of the reflection at the appropriate Bragg angle. In the ground-control case only a small volume of the crystal contributed to the intensity at the diffraction peak. The techniques prove to be highly complementary, with the reciprocal-space mapping providing a quantitative measure of the crystal mosaicity and strain (or variation in lattice spacing) and the topography providing a qualitative overall assessment of the crystal in terms of its X-ray diffraction properties. Structural data collection was also carried out at the synchrotron.

Morphological divergence in a continental adaptive radiation: South American ovenbirds of the genus Cinclodes

USGS Publications Warehouse

Rader, Jonathan A.; Dillon, Michael E.; Chesser, R. Terry; Sabat, Pablo; Martinez del Rio, Carlos

2015-01-01

Cinclodes is an ecologically diverse genus of South American passerine birds and represents a case of continental adaptive radiation along multiple axes. We investigated morphological diversification in Cinclodes using a comprehensive set of morphometric measurements of study skins. Principal component analysis identified 2 primary axes of morphological variation: one describing body size and a second capturing differences in wing-tip shape and toe length. Phylogenetic analyses of the first principal component suggest an early divergence ofCinclodes into 2 main clades characterized by large and small body sizes. We suggest that 2 morphological outliers within these main clades (C. antarcticus and C. palliatus) may be cases of island gigantism and that a third (C. patagonicus) may reflect ecological character displacement. Despite its ecological and physiological diversity, the genus Cinclodes does not appear to show morphological diversity beyond what is typical of other avian genera.

SAS 2 observations of the earth albedo gamma radiation above 35 MeV

NASA Technical Reports Server (NTRS)

Thompson, D. J.; Simpson, G. A.; Ozel, M. E.

1981-01-01

The earth albedo gamma radiation above 35 MeV in the equatorial region is investigated using observations from the second Small Astronomy Satellite. The zenith angle distribution of the gamma radiation has a peak toward the horizon which is about an order of magnitude more intense than the radiation coming from the nadir, and nearly two orders of magnitude more intense than the gamma radiation from most parts of the sky. The gamma radiation originating from the western horizon is a factor of four more intense than the radiation from the eastern horizon and a factor of three more intense than that from the northern and southern directions. This reflects the geomagnetic effects on the incident cosmic rays whose interactions produce the albedo gamma rays. The variation of the upcoming gamma ray intensity with vertical cutoff rigidity is consistent with the empirical relationship found by Gur'yan et al. (1979).

Validation of Community Models: Identifying Events in Space Weather Model Timelines

NASA Technical Reports Server (NTRS)

MacNeice, Peter

2009-01-01

I develop and document a set of procedures which test the quality of predictions of solar wind speed and polarity of the interplanetary magnetic field (IMF) made by coupled models of the ambient solar corona and heliosphere. The Wang-Sheeley-Arge (WSA) model is used to illustrate the application of these validation procedures. I present an algorithm which detects transitions of the solar wind from slow to high speed. I also present an algorithm which processes the measured polarity of the outward directed component of the IMF. This removes high-frequency variations to expose the longer-scale changes that reflect IMF sector changes. I apply these algorithms to WSA model predictions made using a small set of photospheric synoptic magnetograms obtained by the Global Oscillation Network Group as input to the model. The results of this preliminary validation of the WSA model (version 1.6) are summarized.

Optimal Portfolio Selection Under Concave Price Impact

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ma Jin, E-mail: jinma@usc.edu; Song Qingshuo, E-mail: songe.qingshuo@cityu.edu.hk; Xu Jing, E-mail: xujing8023@yahoo.com.cn

2013-06-15

In this paper we study an optimal portfolio selection problem under instantaneous price impact. Based on some empirical analysis in the literature, we model such impact as a concave function of the trading size when the trading size is small. The price impact can be thought of as either a liquidity cost or a transaction cost, but the concavity nature of the cost leads to some fundamental difference from those in the existing literature. We show that the problem can be reduced to an impulse control problem, but without fixed cost, and that the value function is a viscosity solutionmore » to a special type of Quasi-Variational Inequality (QVI). We also prove directly (without using the solution to the QVI) that the optimal strategy exists and more importantly, despite the absence of a fixed cost, it is still in a 'piecewise constant' form, reflecting a more practical perspective.« less

Qualitative and semiquantitative Fourier transformation using a noncoherent system.

PubMed

Rogers, G L

1979-09-15

A number of authors have pointed out that a system of zone plates combined with a diffuse source, transparent input, lens, and focusing screen will display on the output screen the Fourier transform of the input. Strictly speaking, the transform normally displayed is the cosine transform, and the bipolar output is superimposed on a dc gray level to give a positive-only intensity variation. By phase-shifting one zone plate the sine transform is obtained. Temporal modulation is possible. It is also possible to redesign the system to accept a diffusely reflecting input at the cost of introducing a phase gradient in the output. Results are given of the sine and cosine transforms of a small circular aperture. As expected, the sine transform is a uniform gray. Both transforms show unwanted artifacts beyond 0.1 rad off-axis. An analysis shows this is due to unwanted circularly symmetrical moire patterns between the zone plates.

Synchrotron X-Ray Reciprocal Space Mapping, Topography and Diffraction Resolution Studies of Macromolecular Crystal Quality

NASA Technical Reports Server (NTRS)

Boggon, T. J.; Helliwell, J. R.; Judge, Russell A.; Siddons, D. P.; Snell, Edward H.; Stojanoff, V.

2000-01-01

A comprehensive study of microgravity and ground grown chicken egg white lysozyme crystals is presented using synchrotron X-ray reciprocal space mapping, topography techniques and diffraction resolution. Microgravity crystals displayed, on average, reduced intrinsic mosaicities but no differences in terms of stress over their earth grown counterparts. Topographic analysis revealed that in the microgravity case the majority of the crystal was contributing to the peak of the reflection at the appropriate Bragg angle. In the earth case at the diffraction peak only a small volume of the crystal contributed to the intensity. The techniques prove to be highly complementary with the reciprocal space mapping providing a quantitative measure of the crystal mosaicity and stress (or variation in lattice spacing) and topography providing a qualitative overall assessment of the crystal in terms of its X-ray diffraction properties. Structural data collection was also carried out both at the synchrotron and in the laboratory.

Spatial and temporal variability of microgeographic genetic structure in white-tailed deer

USGS Publications Warehouse

Scribner, Kim T.; Smith, Michael H.; Chesser, Ronald K.

1997-01-01

Techniques are described that define contiguous genetic subpopulations of white-tailed deer (Odocoileus virginianus) based on the spatial dispersion of 4,749 individuals that possessed discrete character values (alleles or genotypes) during each of 6 years (1974-1979). White-tailed deer were not uniformly distributed in space, but exhibited considerable spatial genetic structuring. Significant non-random clusters of individuals were documented during each year based on specific alleles and genotypes at the Sdh locus. Considerable temporal variation was observed in the position and genetic composition of specific clusters, which reflected changes in allele frequency in small geographic areas. The position of clusters did not consistently correspond with traditional management boundaries based on major discontinuities in habitat (swamp versus upland) and hunt compartments that were defined by roads and streams. Spatio-temporal stability of observed genetic contiguous clusters was interpreted relative to method and intensity of harvest, movements, and breeding ecology.

Estimating soil water content from ground penetrating radar coarse root reflections

NASA Astrophysics Data System (ADS)

Liu, X.; Cui, X.; Chen, J.; Li, W.; Cao, X.

2016-12-01

Soil water content (SWC) is an indispensable variable for understanding the organization of natural ecosystems and biodiversity. Especially in semiarid and arid regions, soil moisture is the plants primary source of water and largely determine their strategies for growth and survival, such as root depth, distribution and competition between them. Ground penetrating radar (GPR), a kind of noninvasive geophysical technique, has been regarded as an accurate tool for measuring soil water content at intermediate scale in past decades. For soil water content estimation with surface GPR, fixed antenna offset reflection method has been considered to have potential to obtain average soil water content between land surface and reflectors, and provide high resolution and few measurement time. In this study, 900MHz surface GPR antenna was used to estimate SWC with fixed offset reflection method; plant coarse roots (with diameters greater than 5 mm) were regarded as reflectors; a kind of advanced GPR data interpretation method, HADA (hyperbola automatic detection algorithm), was introduced to automatically obtain average velocity by recognizing coarse root hyperbolic reflection signals on GPR radargrams during estimating SWC. In addition, a formula was deduced to determine interval average SWC between two roots at different depths as well. We examined the performance of proposed method on a dataset simulated under different scenarios. Results showed that HADA could provide a reasonable average velocity to estimate SWC without knowledge of root depth and interval average SWC also be determined. When the proposed method was applied to estimation of SWC on a real-field measurement dataset, a very small soil water content vertical variation gradient about 0.006 with depth was captured as well. Therefore, the proposed method could be used to estimate average soil water content from ground penetrating radar coarse root reflections and obtain interval average SWC between two roots at different depths. It is very promising for measuring root-zone-soil-moisture and mapping soil moisture distribution around a shrub or even in field plot scale.

Flux and polarization signals of spatially inhomogeneous gaseous exoplanets

NASA Astrophysics Data System (ADS)

Karalidi, T.; Stam, D. M.; Guirado, D.

2013-07-01

Aims: We present numerically calculated, disk-integrated, spectropolarimetric signals of starlight that is reflected by vertically and horizontally inhomogeneous gaseous exoplanets. We include various spatial features that are present on Solar System's gaseous planets: belts and zones, cyclonic spots, and polar hazes, to test whether such features leave traces in the disk-integrated fux and polarization signals. Methods: Broadband flux and polarization signals of starlight that is reflected by gaseous exoplanets are calculated using an efficient, adding-doubling radiative transfer code, that fully includes single and multiple scattering and polarization. The planetary model atmospheres are vertically inhomogeneous and can be horizontally inhomogeneous, and contain gas molecules and/or cloud and/or aerosol particles. Results: The broadband flux and polarization signals are sensitive to cloud top pressures, although in the presence of local pressure differences, such as in belts and clouds, the flux and polarization phase functions have similar shapes as those of horizontally homogeneous planets. Fitting flux phase functions of a planet with belts and zones using a horizontally homogeneous planet could theoretically yield cloud top pressures that differ by a few hundred mbar from those derived from fitting polarization phase functions. In practice, however, observational errors and uncertainties in cloud properties would make such a fit unreliable. A cyclonic spot like Jupiter's Great Red Spot, covering a few percent of the disk, located in equatorial regions, and rotating in and out of the observer's view yields a temporal variation of a few percent in the broadband flux and a few percent in the degree of polarization. Polar hazes leave strong traces in the polarization of reflected starlight in spatially resolved observations, especially seen at phase angles near 90°. Integrated across the planetary disk, polar hazes that cover only part of the planetary disk, change the broadband degree of polarization of the reflected light by a few percent. Such hazes have only small effects on locally reflected broadband fluxes and negligible effects on disk-integrated broadband fluxes. Conclusions: Deriving the presence of belts and zones in the atmospheres of gaseous exoplanets from broadband flux and polarization observations will be extremely difficult. Cyclonic spots could leave temporal changes in the broadband flux and polarization signals of a few percent. Polar hazes that cover a fraction of the planetary disk, and that are composed of small, Rayleigh scattering particles, change the broadband degree of polarization by at most a few percent.

Fault-tolerant composite Householder reflection

NASA Astrophysics Data System (ADS)

Torosov, Boyan T.; Kyoseva, Elica; Vitanov, Nikolay V.

2015-07-01

We propose a fault-tolerant implementation of the quantum Householder reflection, which is a key operation in various quantum algorithms, quantum-state engineering, generation of arbitrary unitaries, and entanglement characterization. We construct this operation using the modular approach of composite pulses and a relation between the Householder reflection and the quantum phase gate. The proposed implementation is highly insensitive to variations in the experimental parameters, which makes it suitable for high-fidelity quantum information processing.

Abundance and distribution of Corallorhiza odontorhiza reflect variations in climate and ectomycorrhizae

Treesearch

Melissa K. McCormick; Dennis F. Whigham; John P. O' Neill; Janie J. Becker; Sarah Werner; Hanne N. Rasmussen; Thomas D. Bruns; D. Lee Taylor

2009-01-01

The abundance and reproductive activity of orchids have been linked to variations in weather conditions, but few investigators have examined the relationships between orchid flowering dynamics and the distribution and abundance of mycorrhizal fungi. We quantified the abundance of flowering individuals of Corallorhiza odontorhiza, a...

On Praising Convergent Thinking: Creativity as Blind Variation and Selective Retention

ERIC Educational Resources Information Center

Simonton, Dean Keith

2015-01-01

Arthur Cropley (2006) emphasized the critical place that convergent thinking has in creativity. Although he briefly refers to the blind variation and selective retention (BVSR) theory of creativity, his discussion could not reflect the most recent theoretical and empirical developments in BVSR, especially the resulting combinatorial models.…

Geographic Variation in Opioid Prescribing in the U.S.

PubMed Central

McDonald, Douglas C.; Carlson, Kenneth; Izrael, David

2012-01-01

Estimates of geographic variation among states and counties in the prevalence of opioid prescribing are developed using data from a large (135M) representative national sample of opioid prescriptions dispensed during 2008 by 37,000 retail pharmacies. Statistical analyses are used to estimate the extent to which county variation is explained by characteristics of resident populations, their healthcare utilization, proxy measures of morbidity, availability of healthcare resources, and prescription monitoring laws. Geographic variation in prevalence of prescribed opioids is large, greater than variation observed for other healthcare services. Counties having the highest prescribing rates for opioids were disproportionately located in Appalachia and in Southern and Western states. The number of available physicians was by far the strongest predictor of amounts prescribed, but only one-third of county variation is explained by the combination of all measured factors. Wide variation in prescribing opioids reflects weak consensus regarding the appropriate use of opioids for treating pain, especially chronic non-cancer pain. Patients’ demands for treatment have increased, more potent opioids have become available, an epidemic of abuse has emerged, and calls for increased government regulation are growing. Greater guidance, education and training in opioid prescribing are needed for clinicians to support appropriate prescribing practices. Perspective Wide geographic variation that does not reflect differences in the prevalence of injuries, surgeries, or conditions requiring analgesics raises questions about opioid prescribing practices. Low prescription rates may indicate under-treatment, while high rates may indicate overprescribing and insufficient attention to risks of misuse. PMID:23031398

Fractal-like thickness and topography of the salt layer in a pillows province of the southern North Sea

NASA Astrophysics Data System (ADS)

Hernandez Maya, K.; Mitchell, N. C.; Huuse, M.

2017-12-01

Salt topography and thickness variations are important for testing theories of how halokinetic deformation proceeds. The ability to predict thickness variations of salt at small scale is also important for reservoir evaluations, as breach of the salt layer can lead to loss of petroleum fluids and can be difficult to evaluate from seismic reflection data. Relevant to these issues, we here report analysis of data on salt layer topography and thickness from the southern North Sea, where the salt is organized into pillows. These data were derived by the Geological Survey of the Netherlands (TNO) from industry 3D seismic reflection data combined with a dense network of well information. Highs and lows in the topography of the upper salt interface occur spaced over a variety of lengthscales. Power spectral analysis of the interface topography reveals a simple inverse power law relationship between power spectral density and spatial wave number. The relationship suggests that the interface is a self-affine fractal with a fractal dimension of 2.85. A similar analysis of the salt layer thickness also suggests a fractal-like power law. Whereas the layer thickness power law is unsurprising as the underlying basement topography dominates the thickness and it also has a fractal-like power spectrum, the salt topography is not so easily explained as not all the basement faults are overlaid by salt pillows, instead some areas of the dataset salt thinning overlies faults. We consider instead whether a spatially varied loading of the salt layer may have caused this fractal-like geometry. Varied density and thickness of overburdening layers seem unlikely causes, as thicknesses of layers and their reflectivities do not vary sympathetically with the topography of the interface. The composition of the salt layer varies with the relative proportions of halite and denser anhydrite and other minerals. Although limited in scope and representing the mobilized salt layer, the information from the well data could potentially support the loading originating initially from within the salt. Such internal loading needs to be considered in modelling salt deformation for a variety of practical and academic purposes.

Enhanced Vibrational Spectroscopies as Tools for Small Molecule Biosensing

PubMed Central

Boujday, Souhir; Lamy de la Chapelle, Marc; Srajer, Johannes; Knoll, Wolfgang

2015-01-01

In this short summary we summarize some of the latest developments in vibrational spectroscopic tools applied for the sensing of (small) molecules and biomolecules in a label-free mode of operation. We first introduce various concepts for the enhancement of InfraRed spectroscopic techniques, including the principles of Attenuated Total Reflection InfraRed (ATR-IR), (phase-modulated) InfraRed Reflection Absorption Spectroscopy (IRRAS/PM-IRRAS), and Surface Enhanced Infrared Reflection Absorption Spectroscopy (SEIRAS). Particular attention is put on the use of novel nanostructured substrates that allow for the excitation of propagating and localized surface plasmon modes aimed at operating additional enhancement mechanisms. This is then be complemented by the description of the latest development in Surface- and Tip-Enhanced Raman Spectroscopies, again with an emphasis on the detection of small molecules or bioanalytes. PMID:26343666

Measuring laser reflection cross-sections of small unmanned aerial vehicles for laser detection, ranging and tracking

NASA Astrophysics Data System (ADS)

Laurenzis, Martin; Bacher, Emmanuel; Christnacher, Frank

2017-05-01

An increasing number of incidents are reported where small unmanned aerial vehicles (UAV) are involved flying at low altitude. Thus UAVs are becoming more and more a serious threat in civilian and military scenarios leading to serious danger to safety or privacy issues. In this context, the detection and tracking of small UAV flying at low altitude in urban environment or near background structures is a challenge for state of the art detection technologies. In this paper, we focus on detection, tracking and identification by laser sensing technologies that are Laser Gated Viewing and scanning LiDAR. The laser reflection cross-sections (LRCS) has direct impact on the probability to detection and capability for range measurement. Here, we present methods to determine the laser reflection cross-sections by experimental and computational approaches.

How Universal Is the Big Five? Testing the Five-Factor Model of Personality Variation Among Forager–Farmers in the Bolivian Amazon

PubMed Central

Gurven, Michael; von Rueden, Christopher; Massenkoff, Maxim; Kaplan, Hillard; Vie, Marino Lero

2014-01-01

The five-factor model (FFM) of personality variation has been replicated across a range of human societies, suggesting the FFM is a human universal. However, most studies of the FFM have been restricted to literate, urban populations, which are uncharacteristic of the majority of human evolutionary history. We present the first test of the FFM in a largely illiterate, indigenous society. Tsimane forager–horticulturalist men and women of Bolivia (n = 632) completed a translation of the 44-item Big Five Inventory (Benet-Martínez & John, 1998), a widely used metric of the FFM. We failed to find robust support for the FFM, based on tests of (a) internal consistency of items expected to segregate into the Big Five factors, (b) response stability of the Big Five, (c) external validity of the Big Five with respect to observed behavior, (d) factor structure according to exploratory and confirmatory factor analysis, and (e) similarity with a U.S. target structure based on Procrustes rotation analysis. Replication of the FFM was not improved in a separate sample of Tsimane adults (n = 430), who evaluated their spouses on the Big Five Inventory. Removal of reverse-scored items that may have elicited response biases produced factors suggestive of Extraversion, Agreeableness, and Conscientiousness, but fit to the FFM remained poor. Response styles may covary with exposure to education, but we found no better fit to the FFM among Tsimane who speak Spanish or have attended school. We argue that Tsimane personality variation displays 2 principal factors that may reflect socioecological characteristics common to small-scale societies. We offer evolutionary perspectives on why the structure of personality variation may not be invariant across human societies. PMID:23245291

Critical evaluation of energy intake using the Goldberg cut-off for energy intake:basal metabolic rate. A practical guide to its calculation, use and limitations.

PubMed

Black, A E

2000-09-01

To re-state the principles underlying the Goldberg cut-off for identifying under-reporters of energy intake, re-examine the physiological principles and update the values to be substituted into the equation for calculating the cut-off, and to examine its use and limitations. New values are suggested for each element of the Goldberg equation. The physical activity level (PAL) for comparison with energy intake:basal metabolic rate (EI:BMR) should be selected to reflect the population under study; the PAL value of 1.55 x BMR is not necessarily the value of choice. The suggested value for average within-subject variation in energy intake is 23% (unchanged), but other sources of variation are increased in the light of new data. For within-subject variation in measured and estimated BMR, 4% and 8.5% respectively are suggested (previously 2.5% and 8%), and for total between-subject variation in PAL, the suggested value is 15% (previously 12.5%). The effect of these changes is to widen the confidence limits and reduce the sensitivity of the cut-off. The Goldberg cut-off can be used to evaluate the mean population bias in reported energy intake, but information on the activity or lifestyle of the population is needed to choose a suitable PAL energy requirement for comparison. Sensitivity for identifying under-reporters at the individual level is limited. In epidemiological studies information on home, leisure and occupational activity is essential in order to assign subjects to low, medium or high PAL levels before calculating the cut-offs. In small studies, it is desirable to measure energy expenditure, or to calculate individual energy requirements, and to compare energy intake directly with energy expenditure.

Rapid-run ionosonde observations of traveling ionospheric disturbances in the auroral ionosphere

NASA Astrophysics Data System (ADS)

Kozlovsky, Alexander; Turunen, Tauno; Ulich, Thomas

2013-08-01

2007, the Sodankylä Geophysical Observatory routinely performs vertical ionosphere soundings once per minute, using a frequency-modulated continuous-wave chirp at the rate of 500 kHz/s from 500 kHz to 16 MHz. We used these data to study traveling ionospheric disturbances (TIDs) during 10-16 local time. The observations were made between April 2007 and June 2012, mostly during low solar activity. The TIDs were studied in five bands of periods corresponding to the following: infrasonic (acoustic) waves and the buoyancy cutoff (periods from 5 to 10 min); small-scale gravity waves (GWs; 10-15 min); medium-scale (MS; 15-30 min) GWs; medium-large scale (MS-LS; 30-60 min) GWs; and large-scale (LS; 60-120 min) GWs. Relative contribution (with respect to LS TIDs) of the short-period (5-15 min) and MS (15-30 min) TIDs shows minima in winter and maxima in summer. These annual variations anticorrelate with variations of true height, namely, the largest relative amplitudes occur in summer, when TIDs were observed at minimal heights. We suggest that the summer increase of shorter-period TIDs is due to lowering reflection to the height where the Brunt-Väisälä period is smaller and, hence, shorter-period gravity waves exist. The summer maxima were most prominent during the 3 years of minimal solar activity (2008-2010). In 2011, when solar activity increased, the annual variation seems less prominent. Annual variations of the longer-period (30-120 min) TIDs are essentially less significant. For all TIDs, no obvious dependences on the AE and Ap indices of magnetic activity were found.

Epigenetic hereditary transcription profiles III, evidence for an epigenetic network resulting in gender, tissue and age-specific variation in overall transcription

PubMed Central

Simons, Johannes WIM

2009-01-01

Background We have previously shown that deviations from the average transcription profile of a group of functionally related genes are not only heritable, but also demonstrate specific patterns associated with age, gender and differentiation, thereby implicating genome-wide nuclear programming as the cause. To determine whether these results could be reproduced, a different micro-array database (obtained from two types of muscle tissue, derived from 81 human donors aged between 16 to 89 years) was studied. Results This new database also revealed the existence of age, gender and tissue-specific features in a small group of functionally related genes. In order to further analyze this phenomenon, a method was developed for quantifying the contribution of different factors to the variability in gene expression, and for generating a database limited to residual values reflecting constitutional differences between individuals. These constitutional differences, presumably epigenetic in origin, contribute to about 50% of the observed residual variance which is connected with a network of interrelated changes in gene expression with some genes displaying a decrease or increase in residual variation with age. Conclusion Epigenetic variation in gene expression without a clear concomitant relation to gene function appears to be a widespread phenomenon. This variation is connected with interactions between genes, is gender and tissue specific and is related to cellular aging. This finding, together with the method developed for analysis, might contribute to the elucidation of the role of nuclear programming in differentiation, aging and carcinogenesis Reviewers This article was reviewed by Thiago M. Venancio (nominated by Aravind Iyer), Hua Li (nominated by Arcady Mushegian) and Arcady Mushegian and J.P.de Magelhaes (nominated by G. Church). PMID:19796384

State Variation in Underreporting of Alcohol Involvement on Death Certificates: Motor Vehicle Traffic Crash Fatalities as an Example

PubMed Central

Castle, I-Jen P; Yi, Hsiao-Ye; Hingson, Ralph W; White, Aaron M

2014-01-01

Objective: We used motor vehicle traffic (MVT) crash fatalities as an example to examine the extent of underreporting of alcohol involvement on death certificates and state variations. Method: We compared MVT-related death certificates identified from national mortality data (Multiple Cause of Death [MCoD] data) with deaths in national traffic census data from the Fatality Analysis Reporting System (FARS). Because MCoD data were not individually linked to FARS data, the comparisons were at the aggregate level. Reporting ratio of alcohol involvement on death certificates was thus computed as the prevalence of any mention of alcohol-related conditions among MVT deaths in MCoD, divided by the prevalence of decedents with blood alcohol concentration (BAC) test results (not imputed) of .08% or greater in FARS. Through bivariate analysis and multiple regression, we explored state characteristics correlated with state reporting ratios. Results: Both MCoD and FARS identified about 450,000 MVT deaths in 1999–2009. Reporting ratio was only 0.16 for all traffic deaths and 0.18 for driver deaths nationally, reflecting that death certificates captured only a small percentage of MVT deaths involving BAC of .08% or more. Reporting ratio did not improve over time, even though FARS indicated that the prevalence of BAC of at least .08% in MVT deaths increased from 19.9% in 1999 to 24.2% in 2009. State reporting ratios varied widely, from 0.02 (Nevada and New Jersey) to 0.81 (Delaware). Conclusions: The comparison of MCoD with FARS revealed a large discrepancy in reporting alcohol involvement in MVT deaths and considerable state variation in the magnitude of underreporting. We suspect similar underreporting and state variations in alcohol involvement in other types of injury deaths. PMID:24650824

The Southern Oscillation recorded in the δ18O of corals from Tarawa Atoll

NASA Astrophysics Data System (ADS)

Cole, Julia E.; Fairbanks, Richard G.

1990-10-01

In the western equatorial Pacific, the El Niño/Southern Oscillation (ENSO) phenomenon is characterized by precipitation variability associated with the migration of the Indonesian low pressure cell to the region of the date line and the equator. During ENSO events, Tarawa Atoll (1°N, 172°E) experiences heavy rainfall which has an estimated δ18O of about -8 to -10‰ δ18OSMOW. At Tarawa, sufficient precipitation of this composition falls during ENSO events to alter the δ18O and the salinity of the surface waters. Oxygen isotope records from two corals collected off the reef crest of Tarawa reflect rainfall variations associated with both weak and strong ENSO conditions, with approximately monthly resolution. Coral skeletal δ18O variations due to small sea surface temperature (SST) changes are secondary. These records demonstrate the remarkable ability of this technique to reconstruct variations in the position of the Indonesian Low from coral δ18O records in the western equatorial Pacific, a region which has few paleoclimatic records. The coral isotopic data correctly resolve the relative magnitudes of recent variations in the Southern Oscillation Index. Combining the Tarawa record with an oxygen isotopic history from a Galápagos Islands coral demonstrates the ability to distinguish the meteorologic (precipitation) and oceanographic (SST) anomalies that characterize ENSO events across the Pacific Basin over the period of common record (1960-1979). Comparison of the intensity of climatic anomalies at these two sites yields insight into the spatial variability of ENSO events. Isotope records from older corals can provide high-resolution, Pacific-wide reconstructions of ENSO behavior during periods of different climate boundary conditions.

How universal is the Big Five? Testing the five-factor model of personality variation among forager-farmers in the Bolivian Amazon.

PubMed

Gurven, Michael; von Rueden, Christopher; Massenkoff, Maxim; Kaplan, Hillard; Lero Vie, Marino

2013-02-01

The five-factor model (FFM) of personality variation has been replicated across a range of human societies, suggesting the FFM is a human universal. However, most studies of the FFM have been restricted to literate, urban populations, which are uncharacteristic of the majority of human evolutionary history. We present the first test of the FFM in a largely illiterate, indigenous society. Tsimane forager-horticulturalist men and women of Bolivia (n = 632) completed a translation of the 44-item Big Five Inventory (Benet-Martínez & John, 1998), a widely used metric of the FFM. We failed to find robust support for the FFM, based on tests of (a) internal consistency of items expected to segregate into the Big Five factors, (b) response stability of the Big Five, (c) external validity of the Big Five with respect to observed behavior, (d) factor structure according to exploratory and confirmatory factor analysis, and (e) similarity with a U.S. target structure based on Procrustes rotation analysis. Replication of the FFM was not improved in a separate sample of Tsimane adults (n = 430), who evaluated their spouses on the Big Five Inventory. Removal of reverse-scored items that may have elicited response biases produced factors suggestive of Extraversion, Agreeableness, and Conscientiousness, but fit to the FFM remained poor. Response styles may covary with exposure to education, but we found no better fit to the FFM among Tsimane who speak Spanish or have attended school. We argue that Tsimane personality variation displays 2 principal factors that may reflect socioecological characteristics common to small-scale societies. We offer evolutionary perspectives on why the structure of personality variation may not be invariant across human societies. (c) 2013 APA, all rights reserved.

Geographic Variation of Diapause and Sensitive Stages of Photoperiodic Response in Laodelphax striatellus Fallén (Hemiptera: Delphacidae)

PubMed Central

Hou, Yang-Yang; Xu, Lan-Zhen; Wu, Yan; Wang, Peng; Shi, Jin-Jian; Zhai, Bao-Ping

2016-01-01

Large numbers of the small brown planthopper Laodelphax striatellus (Fallén) (Hemiptera: Delphacidae) occur in temperate regions, causing severe losses in rice, wheat, and other economically important crops. The planthoppers enter diapause in the third- or fourth-instar nymph stage, induced by short photoperiods and low temperatures. To investigate the geographic variation in L. striatellus diapause, we compared the incidence of nymphal diapause under various constant temperature (20 and 27°C) and a photoperiod of 4:20, 8:16, 10:14, 12:12, 14:10, and 16:8 (L:D) h regimes among three populations collected from Hanoi (21.02° N, 105.85° E, northern Vietnam), Jiangyan (32.51° N, 120.15° E, eastern China), and Changchun (43.89° N, 125.32° E, north-eastern China). Our results indicated that there were significant geographic variations in the diapause of L. striatellus. When the original latitude of the populations increased, higher diapause incidence and longer critical photoperiod (CP) were exhibited. The CPs of the Jiangyan and Changchun populations were ∼12 hr 30 min and 13 hr at 20°C, and 11 hr and 11 hr 20 min at 27°C, respectively. The second- and third-instar nymphs were at the stage most sensitive to the photoperiod. However, when the fourth- and fifth-instar nymphs were transferred to a long photoperiod, the diapause-inducing effect of the short photoperiod on young instars was almost reversed. The considerable geographic variations in the nymphal diapause of L. striatellus reflect their adaptation in response to a variable environment and provide insights to develop effective pest management strategies. PMID:26839318

Interannual Variability In the Atmospheric CO2 Rectification Over Boreal Forests Based On A Coupled Ecosystem-Atmosphere Model

NASA Astrophysics Data System (ADS)

Chen, B.; Chen, J. M.; Worthy, D.

2004-05-01

Ecosystem CO2 exchange and the planetary boundary layer (PBL) are correlated diurnally and seasonally. The simulation of this atmospheric rectifier effect is important in understanding the global CO2 distribution pattern. A 12-year (1990-1996, 1999-2003), continuous CO2 measurement record from Fraserdale, Ontario (located ~150 km north of Timmons), along with a coupled Vertical Diffusion Scheme (VDS) and ecosystem model (Boreal Ecosystem Productivity Simulator, BEPS), is used to investigate the interannual variability in this effect over a boreal forest region. The coupled model performed well in simulating CO2 vertical diffusion processes. Simulated annual atmospheric rectifier effects, (including seasonal and diurnal), quantified as the variation in the mean CO2 concentration from the surface to the top of the PBL, varied from 2.8 to 4.1 ppm, even though the modeled seasonal variations in the PBL depth were similar throughout the 12-year period. The differences in the interannual rectifier effect primarily resulted from changes in the biospheric CO2 uptake and heterotrophic respiration. Correlations in the year-to year variations of the CO2 rectification were found with mean annual air temperatures, simulated gross primary productivity (GPP) and heterotrophic respiration (Rh) (r2=0.5, 0.46, 0.42, respectively). A small increasing trend in the CO2 rectification was also observed. The year-to-year variation in the vertical distribution of the monthly mean CO2 mixing ratios (reflecting differences in the diurnal rectifier effect) was related to interannual climate variability, however, the seasonal rectifier effects were found to be more sensitive to climate variability than the diurnal rectifier effects.

Mineral and chemical variations within an ash-flow sheet from Aso caldera, Southwestern Japan

USGS Publications Warehouse

Lipman, P.W.

1967-01-01

Although products of individual volcanic eruptions, especially voluminous ash-flow eruptions, have been considered among the best available samples of natural magmas, detailed petrographic and chemical study indicates that bulk compositions of unaltered Pleistocene ash-flow tuffs from Aso caldera, Japan, deviate significantly from original magmatic compositions. The last major ash-flow sheet from Aso caldera is as much as 150 meters thick and shows a general vertical compositional change from phenocryst-poor rhyodacite upward into phenocryst-rich trachyandesite; this change apparently reflects in inverse order a compositionally zoned magma chamber in which more silicic magma overlay more mafic magma. Details of these magmatic variations were obscured, however, by: (1) mixing of compositionally distinct batches of magma during upwelling in the vent, as indicated by layering and other heterogeneities within single pumice lumps; (2) mixing of particulate fragments-pumice lumps, ash, and phenocrysts-of varied compositions during emplacement, with the result that separate pumice lenses from a single small outcrop may have a compositional range nearly as great as the bulk-rook variation of the entire sheet; (3) density sorting of phenocrysts and ash during eruption and emplacement, resulting in systematic modal variations with distance from the caldera; (4) addition of xenocrysts, resulting in significant contamination and modification of proportions of crystals in the tuffs; and (5) ground-water leaching of glassy fractions during hydration after cooling. Similar complexities characterize ash-flow tuffs under study in southwestern Nevada and in the San Juan Mountains, Colorado, and probably are widespread in other ash-flow fields as well. Caution and careful planning are required in study of the magmatic chemistry and phenocryst mineralogy of these rocks. ?? 1967 Springer-Verlag.

Geographic Variation of Diapause and Sensitive Stages of Photoperiodic Response in Laodelphax striatellus Fallén (Hemiptera: Delphacidae).

PubMed

Hou, Yang-Yang; Xu, Lan-Zhen; Wu, Yan; Wang, Peng; Shi, Jin-Jian; Zhai, Bao-Ping

2016-01-01

Large numbers of the small brown planthopper Laodelphax striatellus (Fallén) (Hemiptera: Delphacidae) occur in temperate regions, causing severe losses in rice, wheat, and other economically important crops. The planthoppers enter diapause in the third- or fourth-instar nymph stage, induced by short photoperiods and low temperatures. To investigate the geographic variation in L. striatellus diapause, we compared the incidence of nymphal diapause under various constant temperature (20 and 27 °C) and a photoperiod of 4:20, 8:16, 10:14, 12:12, 14:10, and 16:8 (L:D) h regimes among three populations collected from Hanoi (21.02° N, 105.85° E, northern Vietnam), Jiangyan (32.51° N, 120.15° E, eastern China), and Changchun (43.89° N, 125.32° E, north-eastern China). Our results indicated that there were significant geographic variations in the diapause of L. striatellus. When the original latitude of the populations increased, higher diapause incidence and longer critical photoperiod (CP) were exhibited. The CPs of the Jiangyan and Changchun populations were ∼ 12 hr 30 min and 13 hr at 20 °C, and 11 hr and 11 hr 20 min at 27 °C, respectively. The second- and third-instar nymphs were at the stage most sensitive to the photoperiod. However, when the fourth- and fifth-instar nymphs were transferred to a long photoperiod, the diapause-inducing effect of the short photoperiod on young instars was almost reversed. The considerable geographic variations in the nymphal diapause of L. striatellus reflect their adaptation in response to a variable environment and provide insights to develop effective pest management strategies. © The Author 2016. Published by Oxford University Press on behalf of the Entomological Society of America.

AGRESTE project: Agricultural resources investigations in northern Italy and southern France

NASA Technical Reports Server (NTRS)

Berg, A. (Principal Investigator); Flouzat, G.; Deparatesi, S. G.

1978-01-01

The author has identified the following significant results. Recognition of rice varieties at the flowering stage by using airborne scanner data at low altitude (1500 m) seems to be feasible. The accuracies obtained on a reduced test area (3 sq km) range from 65% to 83%. Variations of a single cultural factor, such as nitrogen fertilization, induce variations of the total rice biomass at harvest, which can be correlated closely to the values of the reflectance ratio at earing. When grain production is correlated to total biomass, prediction of yield can be achieved based on reflectance data measured two months before harvest.

The effects of solar incidence angle over digital processing of LANDSAT data

NASA Technical Reports Server (NTRS)

Parada, N. D. J. (Principal Investigator); Novo, E. M. L. M.

1983-01-01

A technique to extract the topography modulation component from digital data is described. The enhancement process is based on the fact that the pixel contains two types of information: (1) reflectance variation due to the target; (2) reflectance variation due to the topography. In order to enhance the signal variation due to topography, the technique recommends the extraction from original LANDSAT data of the component resulting from target reflectance. Considering that the role of topographic modulation over the pixel information will vary with solar incidence angle, the results of this technique of digital processing will differ from one season to another, mainly in highly dissected topography. In this context, the effects of solar incidence angle over the topographic modulation technique were evaluated. Two sets of MSS/LANDSAT data, with solar elevation angles varying from 22 to 41 deg were selected to implement the digital processing at the Image-100 System. A secondary watershed (Rio Bocaina) draining into Rio Paraiba do Sul (Sao Paulo State) was selected as a test site. The results showed that the technique used was more appropriate to MSS data acquired under higher Sun elevation angles. Topographic modulation components applied to low Sun elevation angles lessens rather than enhances topography.

Variational method based on Retinex with double-norm hybrid constraints for uneven illumination correction

NASA Astrophysics Data System (ADS)

Li, Shuo; Wang, Hui; Wang, Liyong; Yu, Xiangzhou; Yang, Le

2018-01-01

The uneven illumination phenomenon reduces the quality of remote sensing image and causes interference in the subsequent processing and applications. A variational method based on Retinex with double-norm hybrid constraints for uneven illumination correction is proposed. The L1 norm and the L2 norm are adopted to constrain the textures and details of reflectance image and the smoothness of the illumination image, respectively. The problem of separating the illumination image from the reflectance image is transformed into the optimal solution of the variational model. In order to accelerate the solution, the split Bregman method is used to decompose the variational model into three subproblems, which are calculated by alternate iteration. Two groups of experiments are implemented on two synthetic images and three real remote sensing images. Compared with the variational Retinex method with single-norm constraint and the Mask method, the proposed method performs better in both visual evaluation and quantitative measurements. The proposed method can effectively eliminate the uneven illumination while maintaining the textures and details of the remote sensing image. Moreover, the proposed method using split Bregman method is more than 10 times faster than the method with the steepest descent method.

Diurnal variations and source apportionment of ozone at the summit of Mount Huang, a rural site in Eastern China.

PubMed

Gao, J; Zhu, B; Xiao, H; Kang, H; Hou, X; Yin, Y; Zhang, L; Miao, Q

2017-03-01

Comprehensive measurements were conducted at the summit of Mount (Mt.) Huang, a rural site located in eastern China during the summer of 2011. They observed that ozone showed pronounced diurnal variations with high concentrations at night and low values during daytime. The Weather Research and Forecasting with Chemistry (WRF-Chem) model was applied to simulate the ozone concentrations at Mt. Huang in June 2011. With processes analysis and online ozone tagging method we coupled into the model system, the causes of this diurnal pattern and the contributions from different source regions were investigated. Our results showed that boundary layer diurnal cycle played an important role in driving the ozone diurnal variation. Further analysis showed that the negative contribution of vertical mixing was significant, resulting in the ozone decrease during the daytime. In contrast, ozone increased at night owing to the significant positive contribution of advection. This shifting of major factor between vertical mixing and advection formed this diurnal variation. Ozone source apportionment results indicated that approximately half was provided by inflow effect of ozone from outside the model domain (O 3-INFLOW ) and the other half was formed by ozone precursors (O 3-PBL ) emitted in eastern, central, and southern China. In the O 3-PBL , 3.0% of the ozone was from Mt. Huang reflecting the small local contribution (O 3-LOC ) and the non-local contributions (O 3-NLOC ) accounted for 41.6%, in which ozone from the southerly regions contributed significantly, for example, 9.9% of the ozone originating from Jiangxi, representing the highest geographical contributor. Because the origin and variation of O 3-NLOC was highly related to the diurnal movements in boundary layer, the similar diurnal patterns between O 3-NLOC and total ozone both indicated the direct influence of O 3-NLOC and the importance of boundary layer diurnal variations in the formation of such distinct diurnal ozone variations at Mt. Huang. Copyright © 2016 Elsevier Ltd. All rights reserved.

Nucleation and Crystallization of Globular Proteins: What we Know and What is Missing

NASA Technical Reports Server (NTRS)

Rosenberger, F.; Vekilov, P. G.; Muschol, M.; Thomas, B. R.

1996-01-01

Recently. much progress has been made in understanding the nucleation and crystallization of globular proteins, including the formation of compositional and structural crystal defects, Insight into the interactions of (screened) protein macro-ions in solution, obtained from light scattering, small angle X-ray scattering and osmotic pressure studies. can guide the search for crystallization conditions. These studies show that the nucleation of globular proteins is governed by the same principles as that of small molecules. However, failure to account for direct and indirect (hydrodynamic) protein interactions in the solutions results in unrealistic aggregation scenarios. Microscopic studies of numerous proteins reveal that crystals grow by the attachment of growth units through the same layer-spreading mechanisms as inorganic crystals. Investigations of the growth kinetics of hen-egg-white lysozyme (HEWL) reveal non-steady behavior under steady external conditions. Long-term variations in growth rates are due to changes in step-originating dislocation groups. Fluctuations on a shorter timescale reflect the non-linear dynamics of layer growth that results from the interplay between interfacial kinetics and bulk transport. Systematic gel electrophoretic analyses suggest that most HEWL crystallization studies have been performed with material containing other proteins at percent levels. Yet, sub-percent levels of protein impurities impede growth step propagation and play a role in the formation of structural/compositional inhomogeneities. In crystal growth from highly purified HEWL solutions, however, such inhomogeneities are much weaker and form only in response to unusually large changes in growth conditions. Equally important for connecting growth conditions to crystal perfection and diffraction resolution are recent advances in structural characterization through high-resolution Bragg reflection profiling and X-ray topography.

RAVAN CubeSat Results: Technologies and Science Demonstrated On Orbit

NASA Astrophysics Data System (ADS)

Swartz, W. H.; Lorentz, S. R.; Huang, P. M.; Smith, A. W.; Yu, Y.; Briscoe, J. S.; Reilly, N.; Reilly, S.; Reynolds, E.; Carvo, J.; Wu, D.

2017-12-01

Elucidating Earth's energy budget is vital to understanding and predicting climate, particularly the small imbalance between the incident solar irradiance and Earth-leaving fluxes of total and solar-reflected energy. Accurately quantifying the spatial and temporal variation of Earth's outgoing energy from space is a challenge—one potentially rendered more tractable with the advent of multipoint measurements from small satellite or hosted payload constellations. The Radiometer Assessment using Vertically Aligned Nanotubes (RAVAN) 3U CubeSat, launched November 11, 2016, is a pathfinder for a constellation to measure the Earth's energy imbalance. The objective of RAVAN is to establish that compact, broadband radiometers absolutely calibrated to high accuracy can be built and operated in space for low cost. RAVAN demonstrates two key technologies: (1) vertically aligned carbon nanotubes as spectrally flat radiometer absorbers and (2) gallium phase-change cells for on-board calibration and degradation monitoring of RAVAN's radiometer sensors. We show on-orbit results, including calibrated irradiance measurements at both shortwave, solar-reflected wavelengths and in the thermal infrared. These results are compared with both modeled upwelling fluxes and those measured by independent Earth energy instruments in low-Earth orbit. Further, we show the performance of two gallium phase-change cells that are used to monitor the degradation of RAVAN's radiometer sensors. In addition to Earth energy budget technology and science, RAVAN also demonstrates partnering with a commercial vendor for the CubeSat bus, payload integration and test, and mission operations. We conclude with a discussion of how a RAVAN-type constellation could enable a breakthrough in the measurement of Earth's energy budget and lead to superior predictions of future climate.

Constraints on Early Triassic carbon cycle dynamics from paired organic and inorganic carbon isotope records

NASA Astrophysics Data System (ADS)

Meyer, K. M.; Yu, M.; Lehrmann, D.; van de Schootbrugge, B.; Payne, J. L.

2013-01-01

Large δ13C excursions, anomalous carbonate precipitates, low diversity assemblages of small fossils, and evidence for marine euxinia in uppermost Permian and Lower Triassic strata bear more similarity to Neoproterozoic carbonates than to the remainders of the Permian and Triassic systems. Middle Triassic diversification of marine ecosystems coincided with the waning of anoxia and stabilization of the global carbon cycle, suggesting that environment-ecosystem linkages were important to biological recovery. However, the Earth system behavior responsible for these large δ13C excursions remains poorly constrained. Here we present a continuous Early Triassic δ13Corg record from south China and use it to test the extent to which Early Triassic excursions in δ13Ccarb record changes in the δ13C of marine dissolved inorganic carbon (DIC). Regression analysis demonstrates a significant positive correlation between δ13Corg and δ13Ccarb across multiple sections that span a paleoenvironmental gradient. Such a correlation is incompatible with diagenetic alteration because no likely mechanism will alter both δ13Corg and δ13Ccarb records in parallel and therefore strongly indicates a primary depositional origin. A simple explanation for this correlation is that a substantial portion of the preserved Corg was derived from the contemporaneous DIC pool, implying that the observed excursions reflect variation in the δ13C of the exogenic carbon reservoir (ocean, atmosphere, biomass). These findings support existing evidence that large δ13C excursions are primary and therefore strengthen the case that large-scale changes to the carbon cycle were mechanistically linked to the low diversity and small size of Early Triassic fossils. Associated sedimentary and biogeochemical phenomena further suggest that similar associations in Neoproterozoic and Cambrian strata may reflect the same underlying controls.

Evaluation of the sustainability of contrasted pig farming systems: breeding programmes.

PubMed

Rydhmer, L; Gourdine, J L; de Greef, K; Bonneau, M

2014-12-01

The sustainability of breeding activities in 15 pig farming systems in five European countries was evaluated. One conventional and two differentiated systems per country were studied. The Conventional systems were the standard systems in their countries. The differentiated systems were of three categories: Adapted Conventional with focus on animal welfare, meat quality or environment (five systems); Traditional with local breeds in small-scale production (three systems) and Organic (two systems). Data were collected with a questionnaire from nine breeding organisations providing animals and semen to the studied farming systems and from, on average, five farmers per farming system. The sustainability assessment of breeding activities was performed in four dimensions. The first dimension described whether the market for the product was well defined, and whether the breeding goal reflected the farming system and the farmers' demands. The second dimension described recording and selection procedures, together with genetic change in traits that were important in the system. The third dimension described genetic variation, both within and between pig breeds. The fourth dimension described the management of the breeding organisation, including communication, transparency, and technical and human resources. The results show substantial differences in the sustainability of breeding activities, both between farming systems within the same category and between different categories of farming systems. The breeding activities are assessed to be more sustainable for conventional systems than for differentiated systems in three of the four dimensions. In most differentiated farming systems, breeding goals are not related to the system, as these systems use the same genetic material as conventional systems. The breeds used in Traditional farming systems are important for genetic biodiversity, but the small scale of these systems renders them vulnerable. It is hoped that, by reflecting on different aspects of sustainability, this study will encourage sustainable developments in pig production.

Methylmercury bioaccumulation in an urban estuary: Delaware River USA.

PubMed

Buckman, Kate; Taylor, Vivien; Broadley, Hannah; Hocking, Daniel; Balcom, Prentiss; Mason, Rob; Nislow, Keith; Chen, Celia

2017-09-01

Spatial variation in mercury (Hg) and methylmercury (MeHg) bioaccumulation in urban coastal watersheds reflects complex interactions between Hg sources, land use, and environmental gradients. We examined MeHg concentrations in fauna from the Delaware River estuary, and related these measurements to environmental parameters and human impacts on the waterway. The sampling sites followed a north to south gradient of increasing salinity, decreasing urban influence, and increasing marsh cover. Although mean total Hg in surface sediments (top 4cm) peaked in the urban estuarine turbidity maximum and generally decreased downstream, surface sediment MeHg concentrations showed no spatial patterns consistent with the examined environmental gradients, indicating urban influence on Hg loading to the sediment but not subsequent methylation. Surface water particulate MeHg concentration showed a positive correlation with marsh cover whereas dissolved MeHg concentrations were slightly elevated in the estuarine turbidity maximum region. Spatial patterns of MeHg bioaccumulation in resident fauna varied across taxa. Small fish showed increased MeHg concentrations in the more urban/industrial sites upstream, with concentrations generally decreasing farther downstream. Invertebrates either showed no clear spatial patterns in MeHg concentrations (blue crabs, fiddler crabs) or increasing concentrations further downstream (grass shrimp). Best-supported linear mixed models relating tissue concentration to environmental variables reflected these complex patterns, with species specific model results dominated by random site effects with a combination of particulate MeHg and landscape variables influencing bioaccumulation in some species. The data strengthen accumulating evidence that bioaccumulation in estuaries can be decoupled from sediment MeHg concentration, and that drivers of MeHg production and fate may vary within a small region.

McGill algorithm for precipitation nowcasting by lagrangian extrapolation (MAPLE) applied to the South Korean radar network. Part I: Sensitivity studies of the Variational Echo Tracking (VET) technique

NASA Astrophysics Data System (ADS)

Bellon, Aldo; Zawadzki, Isztar; Kilambi, Alamelu; Lee, Hee Choon; Lee, Yong Hee; Lee, Gyuwon

2010-08-01

A Variational Echo Tracking (VET) technique has been applied to four months of archived data from the South Korean radar network in order to examine the influence of the various user-selectable parameters on the skill of the resulting 20-min to 4-h nowcasts. The latter are computed over a (512 × 512) array at 2-km resolution. After correcting the original algorithm to take into account the motion of precipitation across the boundaries of such a smaller radar network, we concluded that the set of default input parameters initially assumed is very close to the optimum combination. Decreasing to (5 sx 5) or increasing to (50 × 50) the default vector density of (25 × 25), using two or three maps for velocity determination, varying the relative weights for the constraints of conservation of reflectivity and of the smoothing of the velocity vectors, and finally the application of temporal smoothing all had only marginal effects on the skill of the forecasts. The relatively small sensitivity to significant variations of the VET default parameters is a direct consequence of the fact that the major source of the loss in forecast skill cannot be attributed to errors in the forecast motion, but to the unpredictable nature of the storm growth and decay. Changing the time interval between maps, from 20 to 10 minutes, and significantly increasing the reflectivity threshold from 15 to 30 dBZ had a more noticeable reduction on the forecast skill. Comparisons with the Eulerian "zero velocity" forecast and with a "single" vector forecast have also been performed in order to determine the accrued skill of the VET algorithm. Because of the extensive stratiform nature of the precipitation areas affecting the Korean peninsula, the increased skill is not as large as may have been anticipated. This can be explained by the greater extent of the precipitation systems relative to the size of the radar coverage domain.

Concorde sonic booms as an atmospheric probe.

PubMed

Balachandran, N K; Donn, W L; Rind, D H

1977-07-01

Infrasound generated by the sonic boom from the inbound Concorde supersonic transport is recorded at Palisades, New York (Lamont-Doherty Geological Observatory), as a series of impulses from distances varying from 165 to about 1000 kilometers. Refraction effects determined by temperature and wind conditions return the signal to the surface from both stratospheric (40 to 50 kilometers) and thermospheric (100 to 130 kilometers) levels. The frequency of the recorded signal is a function of the level of reflection; the frequency decreases from impulse stretching as the atmosphere becomes more rarified relative to the sound pressure. The horizontal trace velocity of the signal across the array of instruments is equal to the acoustic velocity at the reflection level. The sonic boom can thus be used to provide temperature-wind parameters at reflection levels estimated from the signal frequency. Daily observed signal variations have indicated significant variations in these parameters.

How a Small Family Run Business Adopted Critical Reflection Action Learning Using Hand Drawn Images to Initiate Organisational Change

ERIC Educational Resources Information Center

Shepherd, Gary

2016-01-01

In this account of practice I would like to share my experiences of facilitating a Critical Reflection Action Learning (CRAL) set with a small family run business, struggling to make change and expand their services due to the problems they encountered in separating their business lives from their family lives. The account I present here is based…

Automatic devices to take water samples and to raise trash screens at weirs

Treesearch

K. G. Reinhart; R. E. Leonard; G. E. Hart

1960-01-01

Experimentation on small watersheds is assuming increasing importance in watershed-management research. Much has been accomplished in developing adequate instrumentation for use in these experiments. Yet many problems still await solution. One difficulty encountered is that small streams are subject to wide variations in flow and that these variations are generally...

Research on the precision measurement of super-low reflectivity

NASA Astrophysics Data System (ADS)

Yuan, Hao-yu; Lu, Zong-gui; Xia, Yan-wen; Peng, Zhi-tao; Liu, Hua; Xu, Long-bo; Sun, Zhi-hong; Tang, Jun

2010-10-01

Introduced a high-precision measurement of measured the super-low reflectivity and small sampling angle. Using single reflect way measured, and compare with re-swatch. Testing the reflectance of the sampling mirror which be used on TIL, and analyze the error. Research results indicate, the main factor which affect result is energy detector error and energy detector linearity. This methods is easy and have high-precision, it can be used to measure the super-low reflectivity sampling mirror reflectance.

Spectral estimators of absorbed photosynthetically active radiation in corn canopies

NASA Technical Reports Server (NTRS)

Gallo, K. P.; Daughtry, C. S. T.; Bauer, M. E.

1985-01-01

Most models of crop growth and yield require an estimate of canopy leaf area index (LAI) or absorption of radiation. Relationships between photosynthetically active radiation (PAR) absorbed by corn canopies and the spectral reflectance of the canopies were investigated. Reflectance factor data were acquired with a Landsat MSS band radiometer. From planting to silking, the three spectrally predicted vegetation indices examined were associated with more than 95 percent of the variability in absorbed PAR. The relationships developed between absorbed PAR and the three indices were evaluated with reflectance factor data acquired from corn canopies planted in 1979 through 1982. Seasonal cumulations of measured LAI and each of the three indices were associated with greater than 50 percent of the variation in final grain yields from the test years. Seasonal cumulations of daily absorbed PAR were associated with up to 73 percent of the variation in final grain yields. Absorbed PAR, cumulated through the growing season, is a better indicator of yield than cumulated leaf area index. Absorbed PAR may be estimated reliably from spectral reflectance data of crop canopies.

Spectral estimators of absorbed photosynthetically active radiation in corn canopies

NASA Technical Reports Server (NTRS)

Gallo, K. P.; Daughtry, C. S. T.; Bauer, M. E.

1984-01-01

Most models of crop growth and yield require an estimate of canopy leaf area index (LAI) or absorption of radiation. Relationships between photosynthetically active radiation (PAR) absorbed by corn canopies and the spectral reflectance of the canopies were investigated. Reflectance factor data were acquired with a LANDSAT MSS band radiometer. From planting to silking, the three spectrally predicted vegetation indices examined were associated with more than 95% of the variability in absorbed PAR. The relationships developed between absorbed PAR and the three indices were evaluated with reflectance factor data acquired from corn canopies planted in 1979 through 1982. Seasonal cumulations of measured LAI and each of the three indices were associated with greater than 50% of the variation in final grain yields from the test years. Seasonal cumulations of daily absorbed PAR were associated with up to 73% of the variation in final grain yields. Absorbed PAR, cumulated through the growing season, is a better indicator of yield than cumulated leaf area index. Absorbed PAR may be estimated reliably from spectral reflectance data of crop canopies.

Thermal-to-visible transducer (TVT) for thermal-IR imaging

NASA Astrophysics Data System (ADS)

Flusberg, Allen; Swartz, Stephen; Huff, Michael; Gross, Steven

2008-04-01

We have been developing a novel thermal-to-visible transducer (TVT), an uncooled thermal-IR imager that is based on a Fabry-Perot Interferometer (FPI). The FPI-based IR imager can convert a thermal-IR image to a video electronic image. IR radiation that is emitted by an object in the scene is imaged onto an IR-absorbing material that is located within an FPI. Temperature variations generated by the spatial variations in the IR image intensity cause variations in optical thickness, modulating the reflectivity seen by a probe laser beam. The reflected probe is imaged onto a visible array, producing a visible image of the IR scene. This technology can provide low-cost IR cameras with excellent sensitivity, low power consumption, and the potential for self-registered fusion of thermal-IR and visible images. We will describe characteristics of requisite pixelated arrays that we have fabricated.

Quantifying color variation: Improved formulas for calculating hue with segment classification.

PubMed

Smith, Stacey D

2014-03-01

Differences in color form a major component of biological variation, and quantifying these differences is the first step to understanding their evolutionary and ecological importance. One common method for measuring color variation is segment classification, which uses three variables (chroma, hue, and brightness) to describe the height and shape of reflectance curves. This study provides new formulas for calculating hue (the variable that describes the "type" of color) to give correct values in all regions of color space. • Reflectance spectra were obtained from the literature, and chroma, hue, and brightness were computed for each spectrum using the original formulas as well as the new formulas. Only the new formulas result in correct values in the blue-green portion of color space. • Use of the new formulas for calculating hue will result in more accurate color quantification for a broad range of biological applications.

Pacific/North American teleconnection controls on precipitation isotope ratios across the contiguous United States

NASA Astrophysics Data System (ADS)

Liu, Zhongfang; Kennedy, Casey D.; Bowen, Gabriel J.

2011-10-01

Large-scale climate teleconnections such as the Pacific/North American (PNA) pattern strongly influence atmospheric processes and continental climate. Here we show that precipitation δ 18O values in the contiguous United States are correlated with an index of the PNA pattern. The δ 18O/PNA relationship varies across the study region and exhibits two prominent modes, with positive correlation in the western USA and negative correlation in the east. This spatial pattern appears not to reflect variation in local climate variables, but rather primarily reflects differences in atmospheric circulation and moisture sources associated with PNA. Our results suggest that strong antiphase variation in paired paleo-water δ 18O proxy records from regions characterized by the two modes of δ 18O/PNA correlation, especially in the Midwest and southwestern USA, may provide a robust basis for reconstruction of past variation in the PNA pattern.

An Autonomous Autopilot Control System Design for Small-Scale UAVs

NASA Technical Reports Server (NTRS)

Ippolito, Corey; Pai, Ganeshmadhav J.; Denney, Ewen W.

2012-01-01

This paper describes the design and implementation of a fully autonomous and programmable autopilot system for small scale autonomous unmanned aerial vehicle (UAV) aircraft. This system was implemented in Reflection and has flown on the Exploration Aerial Vehicle (EAV) platform at NASA Ames Research Center, currently only as a safety backup for an experimental autopilot. The EAV and ground station are built on a component-based architecture called the Reflection Architecture. The Reflection Architecture is a prototype for a real-time embedded plug-and-play avionics system architecture which provides a transport layer for real-time communications between hardware and software components, allowing each component to focus solely on its implementation. The autopilot module described here, although developed in Reflection, contains no design elements dependent on this architecture.

Optical inverse-square displacement sensor

DOEpatents

Howe, Robert D.; Kychakoff, George

1989-01-01

This invention comprises an optical displacement sensor that uses the inverse-square attenuation of light reflected from a diffused surface to calculate the distance from the sensor to the reflecting surface. Light emerging from an optical fiber or the like is directed onto the surface whose distance is to be measured. The intensity I of reflected light is angle dependent, but within a sufficiently small solid angle it falls off as the inverse square of the distance from the surface. At least a pair of optical detectors are mounted to detect the reflected light within the small solid angle, their ends being at different distances R and R+.DELTA.R from the surface. The distance R can then be found in terms of the ratio of the intensity measurements and the separation length as ##EQU1##