Processes regulating nitric oxide emissions from soils.

PubMed

Pilegaard, Kim

2013-07-05

Nitric oxide (NO) is a reactive gas that plays an important role in atmospheric chemistry by influencing the production and destruction of ozone and thereby the oxidizing capacity of the atmosphere. NO also contributes by its oxidation products to the formation of acid rain. The major sources of NO in the atmosphere are anthropogenic emissions (from combustion of fossil fuels) and biogenic emission from soils. NO is both produced and consumed in soils as a result of biotic and abiotic processes. The main processes involved are microbial nitrification and denitrification, and chemodenitrification. Thus, the net result is complex and dependent on several factors such as nitrogen availability, organic matter content, oxygen status, soil moisture, pH and temperature. This paper reviews recent knowledge on processes forming NO in soils and the factors controlling its emission to the atmosphere. Schemes for simulating these processes are described, and the results are discussed with the purpose of scaling up to global emission.

Establishing an International Soil Modelling Consortium

NASA Astrophysics Data System (ADS)

Vereecken, Harry; Schnepf, Andrea; Vanderborght, Jan

2015-04-01

Soil is one of the most critical life-supporting compartments of the Biosphere. Soil provides numerous ecosystem services such as a habitat for biodiversity, water and nutrients, as well as producing food, feed, fiber and energy. To feed the rapidly growing world population in 2050, agricultural food production must be doubled using the same land resources footprint. At the same time, soil resources are threatened due to improper management and climate change. Soil is not only essential for establishing a sustainable bio-economy, but also plays a key role also in a broad range of societal challenges including 1) climate change mitigation and adaptation, 2) land use change 3) water resource protection, 4) biotechnology for human health, 5) biodiversity and ecological sustainability, and 6) combating desertification. Soils regulate and support water, mass and energy fluxes between the land surface, the vegetation, the atmosphere and the deep subsurface and control storage and release of organic matter affecting climate regulation and biogeochemical cycles. Despite the many important functions of soil, many fundamental knowledge gaps remain, regarding the role of soil biota and biodiversity on ecosystem services, the structure and dynamics of soil communities, the interplay between hydrologic and biotic processes, the quantification of soil biogeochemical processes and soil structural processes, the resilience and recovery of soils from stress, as well as the prediction of soil development and the evolution of soils in the landscape, to name a few. Soil models have long played an important role in quantifying and predicting soil processes and related ecosystem services. However, a new generation of soil models based on a whole systems approach comprising all physical, mechanical, chemical and biological processes is now required to address these critical knowledge gaps and thus contribute to the preservation of ecosystem services, improve our understanding of climate-change-feedback processes, bridge basic soil science research and management, and facilitate the communication between science and society . To meet these challenges an international community effort is required, similar to initiatives in systems biology, hydrology, and climate and crop research. We therefore propose to establish an international soil modelling consortium with the aims of 1) bringing together leading experts in modelling soil processes within all major soil disciplines, 2) addressing major scientific gaps in describing key processes and their long term impacts with respect to the different functions and ecosystem services provided by soil, 3) intercomparing soil model performance based on standardized and harmonized data sets, 4) identifying interactions with other relevant platforms related to common data formats, protocols and ontologies, 5) developing new approaches to inverse modelling, calibration, and validation of soil models, 6) integrating soil modelling expertise and state of the art knowledge on soil processes in climate, land surface, ecological, crop and contaminant models, and 7) linking process models with new observation, measurement and data evaluation technologies for mapping and characterizing soil properties across scales. Our consortium will bring together modelers and experimental soil scientists at the forefront of new technologies and approaches to characterize soils. By addressing these aims, the consortium will contribute to improve the role of soil modeling as a knowledge dissemination instrument in addressing key global issues and stimulate the development of translational research activities. This presentation will provide a compelling case for this much-needed effort, with a focus on tangible benefits to the scientific and food security communities.

Environmental technologies of woody crop production systems

Treesearch

Ronald S. Zalesny Jr.; John A. Stanturf; Emile S. Gardiner; Gary S. Ba??uelos; Richard A. Hallett; Amir Hass; Craig M. Stange; James H. Perdue; Timothy M. Young; David R. Coyle; William L. Headlee

2016-01-01

Soil erosion, loss of productivity potential, biodiversity loss, water shortage, and soil and water pollution are ongoing processes that decrease or degrade provisioning (e.g., biomass, freshwater) and regulating (e.g., carbon sequestration, soil quality) ecosystem services. Therefore, developing environmental technologies that maximize these services is essential for...

Cotton photosynthetic regulation through nutrient and water availability

USDA-ARS?s Scientific Manuscript database

Photosynthesis is an extremely complicated process that is fundamental to supporting plant growth. It is regulated by multiple internal and external factors. Three factors regulating photosynthesis over which cotton producers can exert some influence are the levels of nitrogen, potassium, and soil...

A soil-landscape framework for understanding spatial and temporal variability in biogeochemical processes in catchments

NASA Astrophysics Data System (ADS)

McGuire, K. J.; Bailey, S. W.; Ross, D. S.

2017-12-01

Heterogeneity in biophysical properties within catchments challenges how we quantify and characterize biogeochemical processes and interpret catchment outputs. Interactions between the spatiotemporal variability of hydrological states and fluxes and soil development can spatially structure catchments, leading to a framework for understanding patterns in biogeochemical processes. In an upland, glaciated landscape at the Hubbard Brook Experimental Forest (HBEF) in New Hampshire, USA, we are embracing the structure and organization of soils to understand the spatial relations between runoff production zones, distinct soil-biogeochemical environments, and solute retention and release. This presentation will use observations from the HBEF to demonstrate that a soil-landscape framework is essential in understanding the spatial and temporal variability of biogeochemical processes in this catchment. Specific examples will include how laterally developed soils reveal the location of active runoff production zones and lead to gradients in primary mineral dissolution and the distribution of weathering products along hillslopes. Soil development patterns also highlight potential carbon and nitrogen cycling hotspots, differentiate acidic conditions, and affect the regulation of surface water quality. Overall, this work demonstrates the importance of understanding the landscape-level structural organization of soils in characterizing the variation and extent of biogeochemical processes that occur in catchments.

Regulation of pesticide degradation in the detritusphere

NASA Astrophysics Data System (ADS)

Pagel, Holger; Poll, Christian; Ingwersen, Joachim; Ditterich, Franziska; Gebala, Aurelia; Kandeler, Ellen; Streck, Thilo

2015-04-01

The detritusphere is a microbial hot spot of C turnover and degradation of pesticides in soils. We aimed at an improved understanding of the regulation mechanisms, which are responsible for stimulated degradation of the herbicide MCPA (2-Methyl-4-chlorophenoxyacetic acid) in response to increased C availability in the detritusphere. We combined a microcosm experiment with biogeochemical modeling and linked genetic information on abundances of total bacteria, fungi and specific pesticide degraders in soil to the coupled biogeochemical dynamics of C and MCPA. As a result of diffusive and convective C transport from litter into the adjacent soil we found increased dissolved organic C (DOC) in soil up to a 6 mm distance to litter (detritusphere). In the detritusphere, we observed increased microbial C and accelerated MCPA degradation. These dynamics were accurately reproduced by the model. Whereas the observed increase of bacteria and pesticide degrader populations in the detritusphere was simulated satisfactorily, the model could not reproduce the steep increase of fungi indicated by the fungal marker gene. Our simulations suggest that bacterial MCPA degraders mostly benefited from high-quality DOC, whereas fungal activity and growth were specifically stimulated by low-quality DOC. According to the simulations, MCPA was predominantly degraded via fungal co-metabolism. Our study demonstrates that biogeochemical processes in soil hotspots are regulated by the interaction of transport processes and microbial dynamics. It further reveals that mathematical modelling is as powerful tool to gain comprehensive insight into the microbial regulation of matter cycling in soil. Genetic information has a high potential to parameterize and evaluate complex mechanistic models, but model approaches must be improved based on extended information on gene dynamics at the cellular level.

Soil processes drive seasonal variation in retention of 15N tracers in a deciduous forest catchment.

PubMed

Goodale, Christine L; Fredriksen, Guinevere; Weiss, Marissa S; McCalley, K; Sparks, Jed P; Thomas, Steven A

2015-10-01

Seasonal patterns of stream nitrate concentration have long been interpreted as demonstrating the central role of plant uptake in regulating stream nitrogen loss from forested catchments. Soil processes are rarely considered as important drivers of these patterns. We examined seasonal variation in N retention in a deciduous forest using three whole-ecosystem 15N tracer additions: in late April (post-snowmelt, pre-leaf-out), late July (mid-growing- season), and late October (end of leaf-fall). We expected that plant 15N uptake would peak in late spring and midsummer, that immobilization in surface litter and soil would peak the following autumn leaf-fall, and that leaching losses would vary inversely with 15N retention. Similar to most other 15N tracer studies, we found that litter and soils dominated ecosystem retention of added 15N. However, 15N recovery in detrital pools varied tremendously by season, with > 90% retention in spring and autumn and sharply reduced 15N retention in late summer. During spring, over half of the 15N retained in soil occurred within one day in the heavy (mineral-associated) soil fraction. During summer, a large decrease in 15N retention one week after addition coincided with increased losses of 15NO3- to soil leachate and seasonal increases in soil and stream NO3- concentrations, although leaching accounted for only a small fraction of the lost 15N (< 0.2%). Uptake of 15N into roots did not vary by season and accounted for < 4% of each tracer addition. Denitrification or other processes that lead to N gas loss may have consumed the rest. These measurements of 15N movement provide strong evidence for the dominant role of soil processes in regulating seasonal N retention and losses in this catchment and perhaps others with similar soils.

Soil organic matter regulates molybdenum storage and mobility in forests

USGS Publications Warehouse

Marks, Jade A; Perakis, Steven; King, Elizabeth K.; Pett-Ridge, Julie

2015-01-01

The trace element molybdenum (Mo) is essential to a suite of nitrogen (N) cycling processes in ecosystems, but there is limited information on its distribution within soils and relationship to plant and bedrock pools. We examined soil, bedrock, and plant Mo variation across 24 forests spanning wide soil pH gradients on both basaltic and sedimentary lithologies in the Oregon Coast Range. We found that the oxidizable organic fraction of surface mineral soil accounted for an average of 33 %of bulk soil Mo across all sites, followed by 1.4 % associated with reducible Fe, Al, and Mn-oxides, and 1.4 % in exchangeable ion form. Exchangeable Mo was greatest at low pH, and its positive correlation with soil carbon (C) suggests organic matter as the source of readily exchangeable Mo. Molybdenum accumulation integrated over soil profiles to 1 m depth (τMoNb) increased with soil C, indicating that soil organic matter regulates long-term Mo retention and loss from soil. Foliar Mo concentrations displayed no relationship with bulk soil Mo, and were not correlated with organic horizon Mo or soil extractable Mo, suggesting active plant regulation of Mo uptake and/or poor fidelity of extractable pools to bioavailability. We estimate from precipitation sampling that atmospheric deposition supplies, on average, over 10 times more Mo annually than does litterfall to soil. In contrast, bedrock lithology had negligible effects on foliar and soil Mo concentrations and on Mo distribution among soil fractions. We conclude that atmospheric inputs may be a significant source of Mo to forest ecosystems, and that strong Mo retention by soil organic matter limits ecosystem Mo loss via dissolution and leaching pathways.

Soils Project Risk-Based Corrective Action Evaluation Process with ROTC 1 and ROTC 2, Revision 0

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matthews, Patrick; Sloop, Christina

2012-04-01

This document formally defines and clarifies the NDEP-approved process the NNSA/NSO Soils Activity uses to fulfill the requirements of the FFACO and state regulations. This process is used to establish FALs in accordance with the risk-based corrective action (RBCA) process stipulated in Chapter 445 of the Nevada Administrative Code (NAC) as described in the ASTM International (ASTM) Method E1739-95 (NAC, 2008; ASTM, 1995). It is designed to provide a set of consistent standards for chemical and radiological corrective actions.

Life in the dark: Roots and how they regulate plant-soil interactions

NASA Astrophysics Data System (ADS)

Wu, Y.; Chou, C.; Peruzzo, L.; Riley, W. J.; Hao, Z.; Petrov, P.; Newman, G. A.; Versteeg, R.; Blancaflor, E.; Ma, X.; Dafflon, B.; Brodie, E.; Hubbard, S. S.

2017-12-01

Roots play a key role in regulating interactions between soil and plants, an important biosphere process critical for soil development and health, global food security, carbon sequestration, and the cycling of elements (water, carbon, nutrients, and environmental contaminants). However, their underground location has hindered studies of plant roots and the role they play in regulating plant-soil interactions. Technological limitations for root phenotyping and the lack of an integrated approach capable of linking root development, its environmental adaptation/modification with subsequent impact on plant health and productivity are major challenges faced by scientists as they seek to understand the plant's hidden half. To overcome these challenges, we combine novel experimental methods with numerical simulations, and conduct controlled studies to explore the dynamic growth of crop roots. We ask how roots adapt to and change the soil environment and their subsequent impacts on plant health and productivity. Specifically, our efforts are focused on (1) developing novel geophysical approaches for non-invasive plant root and rhizosphere characterization; (2) correlating root developments with key canopy traits indicative of plant health and productivity; (3) developing numerical algorithms for novel geophysical root signal processing; (4) establishing plant growth models to explore root-soil interactions and above and below ground traits co-variabilities; and (5) exploring how root development modifies rhizosphere physical, hydrological, and geochemical environments for adaptation and survival. Our preliminary results highlight the potential of using electro-geophysical methods to quantifying key rhizosphere traits, the capability of the ecosys model for mechanistic plant growth simulation and traits correlation exploration, and the combination of multi-physics and numerical approach for a systematic understanding of root growth dynamics, impacts on soil physicochemical environments, and plant health and productivity.

Practice-Based Evidence Informs Environmental Health Policy and Regulation: A Case Study of Residential Lead-Soil Contamination in Rhode Island

PubMed Central

Thompson, Marcella Remer; Burdon, Andrea; Boekelheide, Kim

2013-01-01

Prior to 1978, the exteriors of Rhode Island's municipal water towers were painted with lead-containing paint. Over time, this lead-containing paint either flaked-off or was mechanically removed and deposited on adjacent residential properties. Residents challenged inconsistencies across state agencies and federal requirements for collecting and analyzing soil samples. The purpose of this case study was to evaluate the efficacy of Rhode Island Department of Health (RIDOH) soil sampling regulations in determining the extent of lead contamination on residential properties using real world data. Researchers interviewed key government personnel, reviewed written accounts of events and regulations, and extracted and compiled lead data from environmental soil sampling on 31 residential properties adjacent to six municipal water towers. Data were available for 498 core samples. Approximately 26% of the residential properties had lead soil concentrations >1,000 mg/kg. Overall, lead concentration was inversely related to distance from the water tower. Analysis indicated that surface samples alone were insufficient to classify a property as “lead safe”. Potential for misclassification using RIDOH regulations was 13%. For properties deemed initially “lead free”, the total number of samples was too few to analyze. Post-remediation lead-soil concentrations suggest the extent of lead contamination may have been deeper than initially determined. Additional data would improve the ability to draw more meaningful and generalized conclusions. Inconsistencies among regulatory agencies responsible for environmental health obfuscate transparency and erode the public's trust in the regulatory process. Recommendations for improvement include congruency across departmental regulations and specific modifications to soil sampling regulations reflective of lowered CDC reference blood lead value for children 1 to 5 years old (5μg/dL). While scientific research informed the initial development of these environmental health policies and regulations, practice-based evidence did not support their efficacy in context of real world practice. PMID:24055667

Process and apparatus for obtaining samples of liquid and gas from soil

DOEpatents

Rossabi, J.; May, C.P.; Pemberton, B.E.; Shinn, J.; Sprague, K.

1999-03-30

An apparatus and process for obtaining samples of liquid and gas from subsurface soil is provided having filter zone adjacent an external expander ring. The expander ring creates a void within the soil substrate which encourages the accumulation of soil-borne fluids. The fluids migrate along a pressure gradient through a plurality of filters before entering a first chamber. A one-way valve regulates the flow of fluid into a second chamber in further communication with a collection tube through which samples are collected at the surface. A second one-way valve having a reverse flow provides additional communication between the chambers for the pressurized cleaning and back-flushing of the apparatus. 8 figs.

Process and apparatus for obtaining samples of liquid and gas from soil

DOEpatents

Rossabi, Joseph; May, Christopher P.; Pemberton, Bradley E.; Shinn, Jim; Sprague, Keith

1999-01-01

An apparatus and process for obtaining samples of liquid and gas from subsurface soil is provided having filter zone adjacent an external expander ring. The expander ring creates a void within the soil substrate which encourages the accumulation of soil-borne fluids. The fluids migrate along a pressure gradient through a plurality of filters before entering a first chamber. A one-way valve regulates the flow of fluid into a second chamber in further communication with a collection tube through which samples are collected at the surface. A second one-way valve having a reverse flow provides additional communication between the chambers for the pressurized cleaning and back-flushing of the apparatus.

Johnston Atoll Plutonium Contaminated Soil Cleanup Project. 5th quarterly report, 1 August 94 to 31 October 1994. Technical report, 1 August-31 October 1994

DOE Office of Scientific and Technical Information (OSTI.GOV)

Doane, R.W.; Grant, R.H.

1996-09-01

Thermo NUtech is the prime contractor for the Defense Nuclear Agency (DNA), responsible for the operation and maintenance of the Johnston Atoll plutonium Contaminated Soil Cleanup Project. During this production period, the Scope of Work included movement of soil to and from the plant, processing contaminated soil through the Segmented Gate System (SGS) and Soil Washing System, packaging of waste soil for shipment, identification and implementation of process improvements, data collection and validation, and compliance with all applicable regulations governing environmental safety and health. The SGS utilizes arrays of sensitive radiation detectors coupled with sophisticated computer software to segregate contaminatedmore » soil from a moving feed supply on conveyor belts. Contaminated soil is diverted to a `hot path` for plutonium particles greater than 5000 Becquerels or to a supplemental soil washing process designed to remove dispersed low leve%l contamination from a soil faction consisting of very small particles. Low to intermediate levels of contamination are removed from the soil to meet DNA`s criteria for unrestricted use of less than 500 Becquerels per kilogram of soil, with no hot particles. The low level concentrate is expected to be packaged for shipment to an approved defense waste disposal site.« less

The Role of Soil Biological Function in Regulating Agroecosystem Services and Sustainability in the Quesungual Agroforestry System

NASA Astrophysics Data System (ADS)

Fonte, S.; Pauli, N.; Rousseau, L.; SIX, J. W. U. A.; Barrios, E.

2014-12-01

The Quesungual agroforestry system from western Honduras has been increasingly promoted as a promising alternative to traditional slash-and-burn agriculture in tropical dry forest regions of the Americas. Improved residue management and the lack of burning in this system can greatly impact soil biological functioning and a number of key soil-based ecosystem services, yet our understanding of these processes has not been thoroughly integrated to understand system functionality as a whole that can guide improved management. To address this gap, we present a synthesis of various field studies conducted in Central America aimed at: 1) quantifying the influence of the Quesungual agroforestry practices on soil macrofauna abundance and diversity, and 2) understanding how these organisms influence key soil-based ecosystem services that ultimately drive the success of this system. A first set of studies examined the impact of agroecosystem management on soil macrofauna populations, soil fertility and key soil processes. Results suggest that residue inputs (derived from tree biomass pruning), a lack of burning, and high tree densities, lead to conditions that support abundant, diverse soil macrofauna communities under agroforestry, with soil organic carbon content comparable to adjacent forest. Additionally, there is great potential in working with farmers to develop refined soil quality indicators for improved land management. A second line of research explored interactions between residue management and earthworms in the regulation of soil-based ecosystem services. Earthworms are the most prominent ecosystem engineers in these soils. We found that earthworms are key drivers of soil structure maintenance and the stabilization of soil organic matter within soil aggregates, and also had notable impacts on soil nutrient dynamics. However, the impact of earthworms appears to depend on residue management practices, thus indicating the need for an integrated approach for management of soil biological function and ecosystem services in the Quesungual agroforestry system.

Data-Driven Microbial Modeling for Soil Carbon Decomposition and Stabilization

NASA Astrophysics Data System (ADS)

Luo, Yiqi; Chen, Ji; Chen, Yizhao; Feng, Wenting

2017-04-01

Microorganisms have long been known to catalyze almost all the soil organic carbon (SOC) transformation processes (e.g., decomposition, stabilization, and mineralization). Representing microbial processes in Earth system models (ESMs) has the potential to improve projections of SOC dynamics. We have recently examined (1) relationships of microbial functions with environmental factors and (2) microbial regulations of decomposition and other key soil processes. According to three lines of evidence, we have developed a data-driven enzyme (DENZY) model to simulate soil microbial decomposition and stabilization. First, our meta-analysis of 64 published field studies showed that field experimental warming significantly increased soil microbial communities abundance, which is negatively correlated with the mean annual temperature. The negative correlation indicates that warming had stronger effects in colder than warmer regions. Second, we found that the SOC decomposition, especially the transfer between labile SOC and protected SOC, is nonlinearly regulated by soil texture parameters, such as sand and silt contents. Third, we conducted a global analysis of the C-degrading enzyme activities, soil respiration, and SOC content under N addition. Our results show that N addition has contrasting effects on cellulase (hydrolytic C-degrading enzymes) and ligninase (oxidative C-degrading enzymes) activities. N-enhanced cellulase activity contributes to the minor stimulation of soil respiration whereas N-induced repression on ligninase activity drives soil C sequestration. Our analysis links the microbial extracellular C-degrading enzymes to the SOC dynamics at ecosystem scales across scores of experimental sites around the world. It offers direct evidence that N-induced changes in microbial community and physiology play fundamental roles in controlling the soil C cycle. Built upon those three lines of empirical evidence, the DENZY model includes two enzyme pools and explicitly characterizes two classes of extracellular enzyme activities: one that degrades organic molecules containing both C and N (e.g., chitin or protein) and another that degrades only C (e.g., cellulose). The DENZY model assumes that the microbes allocate resources to different enzyme pools so as to exactly satisfy microbial CN ratio stoichiometry in response to changes in climate conditions and soil attributes. The DENZY model can simulate differential effects of nitrogen fertilization on the two groups of enzymes and thus soil respiration and SOC dynamics. We will select field experimental sites to test the DENZY model. With increasing amounts of available observations and data synthesis, this DENZY model will be better parameterized and have a potential to reveal how responses of microbial enzymes to environmental changes regulate soil carbon decomposition and stabilization.

Water balance creates a threshold in soil pH at the global scale.

PubMed

Slessarev, E W; Lin, Y; Bingham, N L; Johnson, J E; Dai, Y; Schimel, J P; Chadwick, O A

2016-11-21

Soil pH regulates the capacity of soils to store and supply nutrients, and thus contributes substantially to controlling productivity in terrestrial ecosystems. However, soil pH is not an independent regulator of soil fertility-rather, it is ultimately controlled by environmental forcing. In particular, small changes in water balance cause a steep transition from alkaline to acid soils across natural climate gradients. Although the processes governing this threshold in soil pH are well understood, the threshold has not been quantified at the global scale, where the influence of climate may be confounded by the effects of topography and mineralogy. Here we evaluate the global relationship between water balance and soil pH by extracting a spatially random sample (n = 20,000) from an extensive compilation of 60,291 soil pH measurements. We show that there is an abrupt transition from alkaline to acid soil pH that occurs at the point where mean annual precipitation begins to exceed mean annual potential evapotranspiration. We evaluate deviations from this global pattern, showing that they may result from seasonality, climate history, erosion and mineralogy. These results demonstrate that climate creates a nonlinear pattern in soil solution chemistry at the global scale; they also reveal conditions under which soils maintain pH out of equilibrium with modern climate.

Water balance creates a threshold in soil pH at the global scale

NASA Astrophysics Data System (ADS)

Slessarev, E. W.; Lin, Y.; Bingham, N. L.; Johnson, J. E.; Dai, Y.; Schimel, J. P.; Chadwick, O. A.

2016-12-01

Soil pH regulates the capacity of soils to store and supply nutrients, and thus contributes substantially to controlling productivity in terrestrial ecosystems. However, soil pH is not an independent regulator of soil fertility—rather, it is ultimately controlled by environmental forcing. In particular, small changes in water balance cause a steep transition from alkaline to acid soils across natural climate gradients. Although the processes governing this threshold in soil pH are well understood, the threshold has not been quantified at the global scale, where the influence of climate may be confounded by the effects of topography and mineralogy. Here we evaluate the global relationship between water balance and soil pH by extracting a spatially random sample (n = 20,000) from an extensive compilation of 60,291 soil pH measurements. We show that there is an abrupt transition from alkaline to acid soil pH that occurs at the point where mean annual precipitation begins to exceed mean annual potential evapotranspiration. We evaluate deviations from this global pattern, showing that they may result from seasonality, climate history, erosion and mineralogy. These results demonstrate that climate creates a nonlinear pattern in soil solution chemistry at the global scale; they also reveal conditions under which soils maintain pH out of equilibrium with modern climate.

Processes regulating progressive nitrogen limitation under elevated carbon dioxide: a meta-analysis

NASA Astrophysics Data System (ADS)

Liang, J.; Qi, X.; Souza, L.; Luo, Y.

2015-10-01

Nitrogen (N) cycle has the potential to regulate climate change through its influence on carbon (C) sequestration. Although extensive researches have been done to explore whether or not progressive N limitation (PNL) occurs under CO2 enrichment, a comprehensive assessment of the processes that regulate PNL is still lacking. Here, we quantitatively synthesized the responses of all major processes and pools in terrestrial N cycle with meta-analysis of CO2 experimental data available in the literature. The results showed that CO2 enrichment significantly increased N sequestration in plant and litter pools but not in soil pool. Thus, the basis of PNL occurrence partially exists. However, CO2 enrichment also significantly increased the N influx via biological N fixation, but decreased the N efflux via leaching. In addition, no general diminished CO2 fertilization effect on plant growth over time was observed. Overall, our analyses suggest that the extra N supply by the increased biological N fixation and decreased leaching may potentially alleviate PNL under elevated CO2 conditions. Moreover, our synthesis showed that CO2 enrichment increased soil ammonium (NH4+) but decreased nitrate (NO3-). The different responses of NH4+ and NO3-, and the consequent biological processes, may result in changes in soil microenvironment, community structures and above-belowground interactions, which could potentially affect the terrestrial biogeochemical cycles and the feedback to climate change.

Influence of forest disturbance on stable nitrogen isotope ratios in soil and vegetation profiles

Treesearch

Jennifer D. Knoepp; Scott R. Taylor; Lindsay R. Boring; Chelcy F. Miniat

2015-01-01

Soil and plant stable nitrogen isotope ratios (15 N) are influenced by atmospheric nitrogen (N) inputs and processes that regulate organic matter (OM) transformation and N cycling. The resulting 15N patterns may be useful for discerning ecosystem differences in N cycling. We studied two ecosystems; longleaf pine wiregrass (...

Linking Soil Moisture Variation and Abundance of Plants to Geomorphic Processes: A Generalized Model for Erosion-Uplifting Landscapes

NASA Astrophysics Data System (ADS)

Ding, Junyan; Johnson, Edward A.; Martin, Yvonne E.

2018-03-01

The diffusive and advective erosion-created landscapes have similar structure (hillslopes and channels) across different scales regardless of variations in drivers and controls. The relative magnitude of diffusive erosion to advective erosion (D/K ratio) in a landscape development model controls hillslope length, shape, and drainage density, which regulate soil moisture variation, one of the critical resources of plants, through the contributing area (A) and local slope (S) represented by a topographic index (TI). Here we explore the theoretical relation between geomorphic processes, TI, and the abundance and distribution of plants. We derived an analytical model that expresses the TI with D, K, and A. This gives us the relation between soil moisture variation and geomorphic processes. Plant tolerance curves are used to link plant performance to soil moisture. Using the hypothetical tolerance curves of three plants, we show that the abundance and distribution of xeric, mesic, and hydric plants on the landscape are regulated by the D/K ratio. Where diffusive erosion is the major erosion process (large D/K ratio), mesic plants have higher abundance relative to xeric and hydric plants and the landscape has longer and convex-upward hillslope and low channel density. Increasing the dominance of advective erosion increases relative abundance of xeric and hydric plants dominance, and the landscape has short and concave hillslope and high channel density.

Effective treatment of PAH contaminated Superfund site soil with the peroxy-acid process.

PubMed

Scott Alderman, N; N'Guessan, Adeola L; Nyman, Marianne C

2007-07-31

Peroxy-organic acids are formed by the chemical reaction between organic acids and hydrogen peroxide. The peroxy-acid process was applied to two Superfund site soils provided by the U.S. Environmental Protection Agency (EPA). Initial small-scale experiments applied ratios of 3:5:7 (v/v/v) or 3:3:9 (v/v/v) hydrogen peroxide:acetic acid:deionized (DI) water solution to 5g of Superfund site soil. The experiment using 3:5:7 (v/v/v) ratio resulted in an almost complete degradation of the 14 EPA regulated polycyclic aromatic hydrocarbons (PAHs) in Bedford LT soil during a 24-h reaction period, while the 3:3:9 (v/v/v) ratio resulted in no applicable degradation in Bedford LT lot 10 soil over the same reaction period. Specific Superfund site soil characteristics (e.g., pH, total organic carbon content and particle size distribution) were found to play an important role in the availability of the PAHs and the efficiency of the transformation during the peroxy-acid process. A scaled-up experiment followed treating 150g of Bedford LT lot 10 soil with and without mixing. The scaled-up processes applied a 3:3:9 (v/v/v) solution resulting in significant decrease in PAH contamination. These findings demonstrate the peroxy-acid process as a viable option for the treatment of PAH contaminated soils. Further work is necessary in order to elucidate the mechanisms of this process.

A model framework to represent plant-physiology and rhizosphere processes in soil profile simulation models

NASA Astrophysics Data System (ADS)

Vanderborght, J.; Javaux, M.; Couvreur, V.; Schröder, N.; Huber, K.; Abesha, B.; Schnepf, A.; Vereecken, H.

2013-12-01

Plant roots play a crucial role in several key processes in soils. Besides their impact on biogeochemical cycles and processes, they also have an important influence on physical processes such as water flow and transport of dissolved substances in soils. Interaction between plant roots and soil processes takes place at different scales and ranges from the scale of an individual root and its directly surrounding soil or rhizosphere over the scale of a root system of an individual plant in a soil profile to the scale of vegetation patterns in landscapes. Simulation models that are used to predict water flow and solute transport in soil-plant systems mainly focus on the individual plant root system scale, parameterize single-root scale phenomena, and aggregate the root system scale to the vegetation scale. In this presentation, we will focus on the transition from the single root to the root system scale. Using high resolution non-invasive imaging techniques and methods, gradients in soil properties and states around roots and their difference from the bulk soil properties could be demonstrated. Recent developments in plant sciences provide new insights in the mechanisms that control water fluxes in plants and in the adaptation of root properties or root plasticity to changing soil conditions. However, since currently used approaches to simulate root water uptake neither resolve these small scale processes nor represent processes and controls within the root system, transferring this information to the whole soil-plant system scale is a challenge. Using a simulation model that describes flow and transport processes in the soil, resolves flow and transport towards individual roots, and describes flow and transport within the root system, such a transfer could be achieved. We present a few examples that illustrate: (i) the impact of changed rhizosphere hydraulic properties, (ii) the effect of root hydraulic properties and root system architecture, (iii) the regulation of plant transpiration by root-zone produced plant hormones, and (iv) the impact of salt accumulation at the soil-root interface on root water uptake. We further propose a framework how this process knowledge could be implemented in root zone simulation models that do not resolve small scale processes.

Differential controls on soil carbon density and mineralization among contrasting forest types in a temperate forest ecosystem.

PubMed

You, Ye-Ming; Wang, Juan; Sun, Xiao-Lu; Tang, Zuo-Xin; Zhou, Zhi-Yong; Sun, Osbert Jianxin

2016-03-01

Understanding the controls on soil carbon dynamics is crucial for modeling responses of ecosystem carbon balance to global change, yet few studies provide explicit knowledge on the direct and indirect effects of forest stands on soil carbon via microbial processes. We investigated tree species, soil, and site factors in relation to soil carbon density and mineralization in a temperate forest of central China. We found that soil microbial biomass and community structure, extracellular enzyme activities, and most of the site factors studied varied significantly across contrasting forest types, and that the associations between activities of soil extracellular enzymes and microbial community structure appeared to be weak and inconsistent across forest types, implicating complex mechanisms in the microbial regulation of soil carbon metabolism in relation to tree species. Overall, variations in soil carbon density and mineralization are predominantly accounted for by shared effects of tree species, soil, microclimate, and microbial traits rather than the individual effects of the four categories of factors. Our findings point to differential controls on soil carbon density and mineralization among contrasting forest types and highlight the challenge to incorporate microbial processes for constraining soil carbon dynamics in global carbon cycle models.

Differential controls on soil carbon density and mineralization among contrasting forest types in a temperate forest ecosystem

PubMed Central

You, Ye-Ming; Wang, Juan; Sun, Xiao-Lu; Tang, Zuo-Xin; Zhou, Zhi-Yong; Sun, Osbert Jianxin

2016-01-01

Understanding the controls on soil carbon dynamics is crucial for modeling responses of ecosystem carbon balance to global change, yet few studies provide explicit knowledge on the direct and indirect effects of forest stands on soil carbon via microbial processes. We investigated tree species, soil, and site factors in relation to soil carbon density and mineralization in a temperate forest of central China. We found that soil microbial biomass and community structure, extracellular enzyme activities, and most of the site factors studied varied significantly across contrasting forest types, and that the associations between activities of soil extracellular enzymes and microbial community structure appeared to be weak and inconsistent across forest types, implicating complex mechanisms in the microbial regulation of soil carbon metabolism in relation to tree species. Overall, variations in soil carbon density and mineralization are predominantly accounted for by shared effects of tree species, soil, microclimate, and microbial traits rather than the individual effects of the four categories of factors. Our findings point to differential controls on soil carbon density and mineralization among contrasting forest types and highlight the challenge to incorporate microbial processes for constraining soil carbon dynamics in global carbon cycle models. PMID:26925871

Long- and short-term changes in nutrient availability following commercial sawlog harvest via cable logging

Treesearch

Jennifer Knoepp; Wayne Swank; Bruce L. Haines

2014-01-01

Soil nutrient availability often limits forest productivity and soils have considerable variation in their ability to supply nutrients. Most southern Appalachian forests are minimally managed with no fertilizer inputs or routine thinning regime. Nutrient availability is regulated by atmospheric inputs and the internal cycling of nutrients through such processes as...

Fire effects on water quality: a synthesis of response regulating factors among contrasting ecosystems

Treesearch

Katherine J. Elliott; James M. Vose

2006-01-01

The key components of watershed processes are inputs in precipitation, interactions of vegetation, soil and water including evapotranspiration (water yield), overland flow (erosion), and storage and filtering (nutrients), and outputs in streamflow. Fire effects occur at the vegetation-soil interface and can result in altering overland flow and infiltration rate of...

Understanding soil erosion impacts in temperate agroecosystems: bridging the gap between geomorphology and soil ecology using nematodes as a model organism

NASA Astrophysics Data System (ADS)

Baxter, C.; Rowan, J. S.; McKenzie, B. M.; Neilson, R.

2013-11-01

Soil is a key asset of natural capital, providing a myriad of goods and ecosystem services that sustain life through regulating, supporting and provisioning roles, delivered by chemical, physical and biological processes. One of the greatest threats to soil is accelerated erosion, which raises a natural process to unsustainable levels, and has downstream consequences (e.g.~economic, environmental and social). Global intensification of agroecosystems is a recognised major cause of soil erosion which, in light of predicted population growth and increased demand for food security, will continue or increase. Transport and redistribution of biota by soil erosion has hitherto been ignored and thus is poorly understood. With the move to sustainable intensification this is a key knowledge gap that needs to be addressed. Here we highlight the erosion-energy and effective-erosion-depth continuum in soils, differentiating between different forms of soil erosion, and argue that nematodes are an appropriate model taxa to investigate impacts of erosion on soil biota across scales. We review the different known mechanisms of soil erosion that impact on soil biota in general, and nematodes in particular, and highlight the few detailed studies, primarily from tropical regions, that have considered soil biota. Based on the limited literature and using nematodes as a model organism we outline future research priorities to initially address the important interrelationships between soil erosion processes and soil biota.

7 CFR 301.80-4 - Issuance and cancellation of certificates and permits.

Code of Federal Regulations, 2011 CFR

2011-01-01

... this subpart. (d) Scientific permits to allow the interstate movement of regulated articles, and... may be issued for any regulated articles (except soil samples for processing, testing, or analysis) by... destination under all Federal domestic plant quarantines applicable to such articles and: (1) Have originated...

7 CFR 301.80-4 - Issuance and cancellation of certificates and permits.

Code of Federal Regulations, 2010 CFR

2010-01-01

... this subpart. (d) Scientific permits to allow the interstate movement of regulated articles, and... may be issued for any regulated articles (except soil samples for processing, testing, or analysis) by... destination under all Federal domestic plant quarantines applicable to such articles and: (1) Have originated...

Biogeosystem technique as the way to certainty of soil, hydrosphere, environment and climate

NASA Astrophysics Data System (ADS)

Kalinitchenko, Valery; Batukaev, Abdulmalik; Zarmaev, Ali; Startsev, Viktor; Chernenko, Vladimir; Dikaev, Zaurbek; Sushkova, Svetlana

2016-04-01

The modern technological platform awkwardly imitates the Nature. Teaching the Geosciences, development of technology, overcoming the problem of uncertainty of geospheres is impossible on the base of outdated knowledge. An emphasis is to be done not on the natural analogues, but on our new technologies - Biogeosystem Technique (BGT*). BGT* is a transcendental (not imitating the natural processes) approach to soil processing, regulation of fluxes of energy, gas, water, matter and biological productivity of biosphere: Intrasoil milling processing in 20-50 cm soil layer provides new soil disperse system, best conditions for stable evolution of techno-soil and plant growth in period up to 40 years after the single processing. Pulse intrasoil discrete irrigation provides an injection of small discrete dose of water which distributes in vertical soil cylinder. Lateral distance between successive injections is 10-15 cm. The water within 5-10 min after injection spreads in cylinder of diameter 2-4 cm at depth from 5 to 50 cm. The soil carcass around the cylinder is dry and mechanically stable. Mean thermodynamic soil water potential after watering is of -0.2 MPa. Stomatal apparatus is in a regulation mode, transpiration rate is reduced, soil solution concentration increased, plant nutrition rate and biological productivity are high. No excessive plant transpiration, evaporation and seepage of water from soil. Intrasoil environmentally safe waste return during intrasoil milling processing and (or) intrasoil pulse discrete plants watering with nutrition. Is provided the medically, veterinary and environmentally safe recycle of municipal, industrial, biological and agricultural wastes into the soil continuum. All applied substances transform to plant nutrients, not degrade to the greenhouse gas, or become the deposit of waste. Capabilities of intrasoil technologies of BGT* to correct and sustain the Nature: Correct soil evolution, long-term biological productivity of intrasoil processed soil of 150% higher compared to initial. Save of fresh water by intrasoil irrigation up to 20 times. Biological return of matter and high biological productivity of soil by environmentally safe intrasoil waste recycling. On the base of BGT* are opened the opportunities for: controlled, stable, safe, biologically effective soil, environment and landscape; improved equilibriums in soil, environment and landscape; reduced water consumption; improved waste management; reduced flux of nutrients to water systems; carbon transformation into the soil to the state of elements of plant nutrition; reducing degradation of biological matter to the state of greenhouse gases; increasing biologi al consumption of carbon dioxide by photosynthesis in terrestrial system; prolongation of the phase of carbon in terrestrial biological system for greenhouse gases sequestration; extension of the active area of biosphere on terrestrial part of the Earth; high rate oxidation of methane and hydrogen sulfide by oxygen, which is ionized in photosynthesis, and thus is biologically active; high biological product output of biosphere. The higher biomass on the Earth, the more ecologically safe food, raw material and biofuel can be produced, better conditions for technologies of Noosphere. Uncertainty of soil, hydrosphere, environment and climate will be reduced by the BGT* methods. Are available BGT* robotic systems of low cost and minimal consumption of energy and material.

24 CFR 55.25 - Areawide compliance.

Code of Federal Regulations, 2010 CFR

2010-04-01

... with expertise in floodplain management, flood evacuation preparedness, land use planning and building regulation, or soil and natural resource conservation shall be invited to participate in the scoping process...

Climate impacts on soil carbon processes along an elevation gradient in the tropical Luquillo Experimental Forest

Treesearch

Dingfang Chen; Mei Yu; Grizelle González; Xiaoming Zou; Qiong Gao

2017-01-01

Tropical forests play an important role in regulating the global climate and the carbon cycle. With the changing temperature and moisture along the elevation gradient, the Luquillo Experimental Forest in Northeastern Puerto Rico provides a natural approach to understand tropical forest ecosystems under climate change. In this study, we conducted a soil translocation...

Edaphic Conditions Regulate Denitrification Directly and Indirectly by Altering Denitrifier Abundance in Wetlands along the Han River, China.

PubMed

Xiong, Ziqian; Guo, Laodong; Zhang, Quanfa; Liu, Guihua; Liu, Wenzhi

2017-05-16

Riparian wetlands play a critical role in retaining nitrogen (N) from upland runoff and improving river water quality, mainly through biological processes such as soil denitrification. However, the relative contribution of abiotic and biotic factors to riparian denitrification capacity remains elusive. Here we report the spatiotemporal dynamics of potential and unamended soil denitrification rates in 20 wetlands along the Han River, an important water source in central China. We also quantified the abundance of soil denitrifying microorganisms using nirK and nirS genes. Results showed that soil denitrification rates were significantly different between riparian and reservoir shoreline wetlands, but not between mountain and lowland wetlands. In addition, soil denitrification rates showed strong seasonality, with higher values in August (summer) and April (spring) but lower values in January (winter). The potential and unamended denitrification rates were positively correlated with edaphic conditions (moisture and carbon concentration), denitrifier abundance, and plant species richness. Path analysis further revealed that edaphic conditions could regulate denitrification rates both directly and indirectly through their effects on denitrifier abundance. Our findings highlight that not only environmental factors, but also biotic factors including denitrifying microorganisms and standing vegetation, play an important role in regulating denitrification rate and N removal capacity in riparian wetlands.

29 CFR 780.118 - “Harvesting.”

Code of Federal Regulations, 2013 CFR

2013-07-01

... INTERPRETATION NOT DIRECTLY RELATED TO REGULATIONS EXEMPTIONS APPLICABLE TO AGRICULTURE, PROCESSING OF... fruit, the stripping of bluegrass seed, and the digging up of shrubs and trees grown in a nursery... from their attachment to the soil or otherwise reduced to possession. For example, the processing of...

29 CFR 780.118 - “Harvesting.”

Code of Federal Regulations, 2011 CFR

2011-07-01

... INTERPRETATION NOT DIRECTLY RELATED TO REGULATIONS EXEMPTIONS APPLICABLE TO AGRICULTURE, PROCESSING OF... fruit, the stripping of bluegrass seed, and the digging up of shrubs and trees grown in a nursery... from their attachment to the soil or otherwise reduced to possession. For example, the processing of...

29 CFR 780.118 - “Harvesting.”

Code of Federal Regulations, 2010 CFR

2010-07-01

... INTERPRETATION NOT DIRECTLY RELATED TO REGULATIONS EXEMPTIONS APPLICABLE TO AGRICULTURE, PROCESSING OF... fruit, the stripping of bluegrass seed, and the digging up of shrubs and trees grown in a nursery... from their attachment to the soil or otherwise reduced to possession. For example, the processing of...

29 CFR 780.118 - “Harvesting.”

Code of Federal Regulations, 2012 CFR

2012-07-01

... INTERPRETATION NOT DIRECTLY RELATED TO REGULATIONS EXEMPTIONS APPLICABLE TO AGRICULTURE, PROCESSING OF... fruit, the stripping of bluegrass seed, and the digging up of shrubs and trees grown in a nursery... from their attachment to the soil or otherwise reduced to possession. For example, the processing of...

29 CFR 780.118 - “Harvesting.”

Code of Federal Regulations, 2014 CFR

2014-07-01

... INTERPRETATION NOT DIRECTLY RELATED TO REGULATIONS EXEMPTIONS APPLICABLE TO AGRICULTURE, PROCESSING OF... fruit, the stripping of bluegrass seed, and the digging up of shrubs and trees grown in a nursery... from their attachment to the soil or otherwise reduced to possession. For example, the processing of...

Technical assistance development soil management policy in Croatia

NASA Astrophysics Data System (ADS)

Spruyt, Eva; Helsen, Stefan; Hambach, Patrick; Cuyvers, Lars

2014-05-01

As from the first of July 2013, Croatia became a EU member country and therefore has to comply with all the EU-rules (the "acquis") as defined in the European Council in Copenhagen in 1993. One of the aspects of this acquis is the protection and conservation of the soil and groundwater and the remediation of contaminated sites that cause human and environmental risks. On behalf of the Department of Environment, Nature and Energy of the Flemish government together with the Public Waste Agency of Flanders(OVAM), ECOREM was assigned to carry out this study. The scope of this study therefore focuses on the aspect of soil management that can be divided into two main policies, beïng the policy for the prevention of soil contamination from new activities(1) and the policy for the management and remediation of historical soil contamination from local sources like industrial sites(2). To form a soil management policy, Croatia must start from the legal obligations enforced by the European Union. One of the European Directives regulating the monitoring and protection of soil and groundwater is the new Industrial Emission Directive ('IED' - 2010/78/EU) from the 24th of November 2010. Whereas the framework of the Directive is larger than contamination of soil , the focus of this study was limited to soil contamination only. In order to comply with the existing EU policy contributing to soil protection, the regulations in the IED, the Croatian government needs to adapt existing legislations or apply new regulations regarding soil monitoring for the industrial activities. Also other EU Directives enforce actions contributing to soil protection. Therefore, a questionnaire with different sorts of questions was sent to the different stakeholders (environmental institutes, agencies, ministries,…). The results were interpreted and allowed Ecorem, being the environmental consultant, to evaluate the gaps in the environmental and soil management policy. This study gives advice on how to integrate these regulations in the existing legislation of Croatia within the current policy of Ministries and Agencies. Therefore an inventory study of the current environmental legislation and governmental organization has been carried out. The inventory study evaluates the process of implementing the EID and other Directives, within the new membership of Croatia in the EU. Taking into account the future Soil Framework Directive and the Proposal of 2010, the study makes suggestions to implement future regulations for the protection and monitoring of the soil and the groundwater for potentially soil-contaminating activities. Finally, the study makes suggestions on how to determine standards for contamination parameters, procedures, definitions, … Input for these needs were obtained through the stakeholders.

Auxin fluxes in the root apex co-regulate gravitropism and lateral root initiation.

PubMed

Lucas, M; Godin, C; Jay-Allemand, C; Laplaze, L

2008-01-01

Root architecture plays an important role in water and nutrient acquisition and in the ability of the plant to adapt to the soil. Lateral root development is the main determinant of the shape of the root system and is controlled by external factors such as nutrient concentration. Here it is shown that lateral root initiation and root gravitropism, two processes that are regulated by auxin, are co-regulated in Arabidopsis. A mathematical model was generated that can predict the effects of gravistimulations on lateral root initiation density and suggests that lateral root initiation is controlled by an inhibitory fields mechanism. Moreover, gene transactivation experiments suggest a mechanism involving a single auxin transport route for both responses. Finally, co-regulation may offer a selective advantage by optimizing soil exploration as supported by a simple quantitative analysis.

Influences of solution chemical conditions on mobilization of TNT from contaminated soil

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dante, D.A.; Tiller, C.L.; Pennell, K.D.

1996-12-31

Residual explosives and their byproducts are common contaminants at several US military installations. One of the major explosive contaminants is 2,4,6-Trinitrotoluene (TNT) (a hydrophobic organic compound). Contamination from TNT has resulted from manufacturing and handling processes which occurred at military installations, especially Army Ammunition Plants (AAP), over many decades until environmental regulations were implemented. TNT causes adverse effects to the environment, including growth inhibition to plants, toxicity to aquatic life, and possible mutagenicity, and also is toxic to humans. As a result of the effects of TNT on the environment and current environmental regulations, substantial research effort has been focusedmore » on determining the fate of TNT in natural systems and the development of remediation processes. Many potential remediation processes, such as those involving plants or microorganisms, are in part limited by the transfer of TNT from solid phases (e.g., sorbed to soil or present as TNT granules) to the aqueous phase. The purpose of this research is to assess the release of TNT from a soil phase to a mobile aqueous phase under varying solution chemical conditions. In particular, influences of pH, aquatic natural organic matter, and surfactants are investigated.« less

Next steps in the development of ecological soil clean-up values for metals.

PubMed

Wentsel, Randall; Fairbrother, Anne

2014-07-01

This special series in Integrated Environmental Assessment Management presents the results from 6 workgroups that were formed at the workshop on Ecological Soil Levels-Next Steps in the Development of Metal Clean-Up Values (17-21 September 2012, Sundance, Utah). This introductory article presents an overview of the issues assessors face when conducting risk assessments for metals in soils, key US Environmental Protection Agency (USEPA) documents on metals risk assessment, and discusses the importance of leveraging from recent major terrestrial research projects, primarily to address Registration, Evaluation, Authorization and Restriction of Chemical Substances (REACH) requirements in Europe, that have significantly advanced our understanding of the behavior and toxicity of metals in soils. These projects developed large data sets that are useful for the risk assessment of metals in soil environments. The workshop attendees met to work toward developing a process for establishing ecological soil clean-up values (Eco-SCVs). The goal of the workshop was to progress from ecological soil screening values (Eco-SSLs) to final clean-up values by providing regulators with the methods and processes to incorporate bioavailability, normalize toxicity thresholds, address food-web issues, and incorporate background concentrations. The REACH data sets were used by workshop participants as case studies in the development of the ecological standards for soils. The workshop attendees discussed scientific advancements in bioavailability, soil biota and wildlife case studies, soil processes, and food-chain modeling. In addition, one of the workgroups discussed the processes needed to frame the topics to gain regulatory acceptance as a directive or guidance by Canada, the USEPA, or the United States. © 2013 SETAC.

Tungstate adsorption onto Italian soils with different characteristics.

PubMed

Petruzzelli, Gianniantonio; Pedron, Francesca

2017-08-01

The study of tungsten in the environment is currently of considerable interest because of the growing concerns resulting from its possible toxicity and carcinogenicity. Adsorption reactions are some of the fundamental processes governing the fate and transport of tungsten compounds in soil. This paper reports data on the adsorption of tungstate ions in three different Italian soils, which are characteristic of the Mediterranean region. The results show that pH is the most important factor governing the adsorption of tungstate in these soils. The data interpreted according to the Langmuir equation show that the maximum value of adsorption is approximately 30 mmol kg -1 for the most acidic soil (pH = 4.50) and approximately 9 mmol kg -1 for the most basic soil (pH = 7.40). In addition, soil organic matter is shown to play a fundamental role in adsorption processes, which are favored in soils with a higher organic matter content. The data could contribute to a better understanding of the behavior of tungsten compounds in Italian soils for which current knowledge is very scarce, also in view of environmental regulations, which are currently lacking.

Soil-borne polycyclic aromatic hydrocarbons in El Paso, Texas: Analysis of a potential problem in the United States/Mexico border region

PubMed Central

De La Torre-Roche, Roberto J.; Lee, Wen-Yee; Campos-Díaz, Sandra I.

2009-01-01

Ultrasonic extraction followed by Stir Bar Sorptive Extraction (SBSE) and thermal desorption inline coupled with Gas Chromatography and Mass Spectrometry (TD/GC/MS)was used to perform a comprehensive determination of soil-borne polycyclic aromatic hydrocarbons (PAHs) in El Paso, Texas. The method provided good sensitivity and faster processing time for the analysis. The total PAHs in El Paso soil ranged from 0.1 to 2225.5 µg kg−1. Although the majority of PAH concentrations did not exceed the soil screening levels regulated by the United States Environmental Protection Agency, the existence of PAHs in this ecosystem is ubiquitous. Naphthalene were found in 100% of the soil samples; while the heavy PAHs (five- and six-ring) were not often detected and mostly remained in closer proximity to industrial areas and major traffic points. The results ruled out the possibility of petroleum refining as the significant source of local soil-borne PAH contamination, but they suggested that the PAHs found in El Paso soil were closely linked to human activities and possible other industrial processes. PMID:18768257

Modelling regulation of decomposition and related root/mycorrhizal processes in arctic tundra soils

DOE Office of Scientific and Technical Information (OSTI.GOV)

Linkins, A.E.

1992-01-01

Since this was the final year of this project principal activities were directed towards either collecting data needed to complete existing incomplete data sets or writing manuscripts. Data sets on Imnaviat Creek watershed basin are functionally complete and data finialized on the cellulose mineralizaiton and dust impact on soil organic carbon and phsophorus decomposition. Seven manuscripts were prepared, and are briefly outlined.

Afforestation neutralizes soil pH.

PubMed

Hong, Songbai; Piao, Shilong; Chen, Anping; Liu, Yongwen; Liu, Lingli; Peng, Shushi; Sardans, Jordi; Sun, Yan; Peñuelas, Josep; Zeng, Hui

2018-02-06

Soil pH regulates soil biogeochemical processes and has cascading effects on terrestrial ecosystem structure and functions. Afforestation has been widely adopted to increase terrestrial carbon sequestration and enhance water and soil preservation. However, the effect of afforestation on soil pH is still poorly understood and inconclusive. Here we investigate the afforestation-caused soil pH changes with pairwise samplings from 549 afforested and 148 control plots in northern China. We find significant soil pH neutralization by afforestation-afforestation lowers pH in relatively alkaline soil but raises pH in relatively acid soil. The soil pH thresholds (T pH ), the point when afforestation changes from increasing to decreasing soil pH, are species-specific, ranging from 5.5 (Pinus koraiensis) to 7.3 (Populus spp.) with a mean of 6.3. These findings indicate that afforestation can modify soil pH if tree species and initial pH are properly matched, which may potentially improve soil fertility and promote ecosystem productivity.

Soil Gas Dynamics and Microbial Activity in the Unsaturated Zone of a Regulated River

NASA Astrophysics Data System (ADS)

Christensen, H.; Ferencz, S. B.; Cardenas, M. B.; Neilson, B. T.; Bennett, P. C.

2017-12-01

Over 60% of the world's rivers are dammed, and are therefore regulated. In some river systems, river regulation is the dominant factor governing fluid exchange and soil gas dynamics in the hyporheic region and overlying unsaturated zone of the river banks. Where this is the case, it is important to understand the effects that an artificially-induced change in river stage can have on the chemical, plant, and microbial components of the unsaturated zone. Daily releases from an upstream dam cause rapid stage fluctuations in the Lower Colorado River east of Austin, Texas. For this study, we utilized an array of water and gas wells along a transect perpendicular to the river to investigate the biogeochemical process occurring in this mixing zone. The gas wells were installed at several depths up to 1.5 meters, and facilitated the continuous monitoring of soil gases as the pulse percolated through the river bank. Water samples collected from the screened wells penetrated to depths below the water table and were analyzed for nutrients, carbon, and major ions. Additionally, two soil cores were taken at different distances from the river and analyzed for soil moisture and grain size. These cores were also analyzed for microbial activity using the total heterotroph count method and the acetylene inhibition technique, a sensitive method of measuring denitrifying activity. The results provide a detailed picture of soil gas flux and biogeochemical processes in the bank environment in a regulated river. Findings indicate that a river pulse that causes a meter-scale change in river stage causes small, centimeter-scale pulses in the water table. We propose that these conditions create an area of elevated microbial respiration at the base of the unsaturated zone that appears to be decoupled from normal diurnal fluctuations. Along the transect, CO2 concentrations increased with increasing depth down to the water table. CO2 concentrations were highest in the time following a pulse, and the lowest concentrations were recorded following the trough in river stage.

Mechanisms of Soil Aggregation: a biophysical modeling framework

NASA Astrophysics Data System (ADS)

Ghezzehei, T. A.; Or, D.

2016-12-01

Soil aggregation is one of the main crosscutting concepts in all sub-disciplines and applications of soil science from agriculture to climate regulation. The concept generally refers to adhesion of primary soil particles into distinct units that remain stable when subjected to disruptive forces. It is one of the most sensitive soil qualities that readily respond to disturbances such as cultivation, fire, drought, flooding, and changes in vegetation. These changes are commonly quantified and incorporated in soil models indirectly as alterations in carbon content and type, bulk density, aeration, permeability, as well as water retention characteristics. Soil aggregation that is primarily controlled by organic matter generally exhibits hierarchical organization of soil constituents into stable units that range in size from a few microns to centimeters. However, this conceptual model of soil aggregation as the key unifying mechanism remains poorly quantified and is rarely included in predictive soil models. Here we provide a biophysical framework for quantitative and predictive modeling of soil aggregation and its attendant soil characteristics. The framework treats aggregates as hotspots of biological, chemical and physical processes centered around roots and root residue. We keep track of the life cycle of an individual aggregate from it genesis in the rhizosphere, fueled by rhizodeposition and mediated by vigorous microbial activity, until its disappearance when the root-derived resources are depleted. The framework synthesizes current understanding of microbial life in porous media; water holding and soil binding capacity of biopolymers; and environmental controls on soil organic matter dynamics. The framework paves a way for integration of processes that are presently modeled as disparate or poorly coupled processes, including storage and protection of carbon, microbial activity, greenhouse gas fluxes, movement and storage of water, resistance of soils against erosion.

Underestimation of boreal soil carbon stocks by mathematical soil carbon models linked to soil nutrient status

NASA Astrophysics Data System (ADS)

Ťupek, Boris; Ortiz, Carina A.; Hashimoto, Shoji; Stendahl, Johan; Dahlgren, Jonas; Karltun, Erik; Lehtonen, Aleksi

2016-08-01

Inaccurate estimate of the largest terrestrial carbon pool, soil organic carbon (SOC) stock, is the major source of uncertainty in simulating feedback of climate warming on ecosystem-atmosphere carbon dioxide exchange by process-based ecosystem and soil carbon models. Although the models need to simplify complex environmental processes of soil carbon sequestration, in a large mosaic of environments a missing key driver could lead to a modeling bias in predictions of SOC stock change.We aimed to evaluate SOC stock estimates of process-based models (Yasso07, Q, and CENTURY soil sub-model v4) against a massive Swedish forest soil inventory data set (3230 samples) organized by a recursive partitioning method into distinct soil groups with underlying SOC stock development linked to physicochemical conditions.For two-thirds of measurements all models predicted accurate SOC stock levels regardless of the detail of input data, e.g., whether they ignored or included soil properties. However, in fertile sites with high N deposition, high cation exchange capacity, or moderately increased soil water content, Yasso07 and Q models underestimated SOC stocks. In comparison to Yasso07 and Q, accounting for the site-specific soil characteristics (e. g. clay content and topsoil mineral N) by CENTURY improved SOC stock estimates for sites with high clay content, but not for sites with high N deposition.Our analysis suggested that the soils with poorly predicted SOC stocks, as characterized by the high nutrient status and well-sorted parent material, indeed have had other predominant drivers of SOC stabilization lacking in the models, presumably the mycorrhizal organic uptake and organo-mineral stabilization processes. Our results imply that the role of soil nutrient status as regulator of organic matter mineralization has to be re-evaluated, since correct SOC stocks are decisive for predicting future SOC change and soil CO2 efflux.

Modeling long-term uptake and re-volatilization of semi-volatile organic compounds (SVOCs) across the soil-atmosphere interface.

PubMed

Bao, Zhongwen; Haberer, Christina; Maier, Uli; Beckingham, Barbara; Amos, Richard T; Grathwohl, Peter

2015-12-15

Soil-atmosphere exchange is important for the environmental fate and atmospheric transport of many semi-volatile organic compounds (SVOCs). This study focuses on modeling the vapor phase exchange of semi-volatile hydrophobic organic pollutants between soil and the atmosphere using the multicomponent reactive transport code MIN3P. MIN3P is typically applied to simulate aqueous and vapor phase transport and reaction processes in the subsurface. We extended the code to also include an atmospheric boundary layer where eddy diffusion takes place. The relevant processes and parameters affecting soil-atmosphere exchange were investigated in several 1-D model scenarios and at various time scales (from years to centuries). Phenanthrene was chosen as a model compound, but results apply for other hydrophobic organic compounds as well. Gaseous phenanthrene was assumed to be constantly supplied to the system during a pollution period and a subsequent regulation period (with a 50% decline in the emission rate). Our results indicate that long-term soil-atmosphere exchange of phenanthrene is controlled by the soil compartment - re-volatilization thus depends on soil properties. A sensitivity analysis showed that accumulation and transport in soils in the short term is dominated by diffusion, whereas in the long term groundwater recharge and biodegradation become relevant. As expected, sorption causes retardation and slows down transport and biodegradation. If atmospheric concentration is reduced (e.g. after environmental regulations), re-volatilization from soil to the atmosphere occurs only for a relatively short time period. Therefore, the model results demonstrate that soils generally are sinks for atmospheric pollutants. The atmospheric boundary layer is only relevant for time scales of less than one month. The extended MIN3P code can also be applied to simulate fluctuating concentrations in the atmosphere, for instance due to temperature changes in the topsoil. Copyright © 2015. Published by Elsevier B.V.

Kinetically limited weathering at low denudation rates in semi-arid climates

NASA Astrophysics Data System (ADS)

Vanacker, V.; Schoonejans, J.; Opfergelt, S.; Ameijeiras-Marino, Y.; Christl, M.

2016-12-01

On Earth, the Critical Zone supports terrestrial life, being the near-surface environment where interactions between the atmosphere, lithosphere, hydrosphere, and biosphere take place Quantitative understanding of the interaction between mechanical rock breakdown, chemical weathering, and physical erosion is essential for unraveling Earth's biogeochemical cycles. In this study, we explore the role of soil water balance on regulating soil chemical weathering under water deficit regimes. Weathering rates and intensities were evaluated for nine soil profiles located on convex ridge crests of three mountain ranges in the Spanish Betic Cordillera. We present and compare quantitative information on soil weathering, chemical depletion and total denudation that were derived based on geochemical mass balance, 10Be cosmogenic nuclides and U-series disequilibria. Soil production rates determined based on U-series isotopes (238U, 234U, 230Th and 226Ra) are of the same order of magnitude as 10Be-derived denudation rates, suggesting steady state soil thickness, in two out of three sampling sites. The chemical weathering intensities are relatively low (˜5 to 30% of the total denudation of the soil) and negatively correlated with the magnitude of the water deficit in soils. Soil weathering extents increase (nonlinearly) with soil thickness and decrease with increasing surface denudation rates, consistent with kinetically limited or controlled weathering. Our study suggests that soil residence time and water availability limit weathering processes in semi-arid climates, which has not been validated previously with field data. An important implication of this finding is that climatic regimes may strongly regulate soil weathering by modulating soil solute fluxes.

Modelling regulation of decomposition and related root/mycorrhizal processes in arctic tundra soils. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Linkins, A.E.

1992-09-01

Since this was the final year of this project principal activities were directed towards either collecting data needed to complete existing incomplete data sets or writing manuscripts. Data sets on Imnaviat Creek watershed basin are functionally complete and data finialized on the cellulose mineralizaiton and dust impact on soil organic carbon and phsophorus decomposition. Seven manuscripts were prepared, and are briefly outlined.

Toward more realistic projections of soil carbon dynamics by Earth system models

USGS Publications Warehouse

Luo, Y.; Ahlström, Anders; Allison, Steven D.; Batjes, Niels H.; Brovkin, V.; Carvalhais, Nuno; Chappell, Adrian; Ciais, Philippe; Davidson, Eric A.; Finzi, Adien; Georgiou, Katerina; Guenet, Bertrand; Hararuk, Oleksandra; Harden, Jennifer; He, Yujie; Hopkins, Francesca; Jiang, L.; Koven, Charles; Jackson, Robert B.; Jones, Chris D.; Lara, M.; Liang, J.; McGuire, A. David; Parton, William; Peng, Changhui; Randerson, J.; Salazar, Alejandro; Sierra, Carlos A.; Smith, Matthew J.; Tian, Hanqin; Todd-Brown, Katherine E. O; Torn, Margaret S.; van Groenigen, Kees Jan; Wang, Ying; West, Tristram O.; Wei, Yaxing; Wieder, William R.; Xia, Jianyang; Xu, Xia; Xu, Xiaofeng; Zhou, T.

2016-01-01

Soil carbon (C) is a critical component of Earth system models (ESMs), and its diverse representations are a major source of the large spread across models in the terrestrial C sink from the third to fifth assessment reports of the Intergovernmental Panel on Climate Change (IPCC). Improving soil C projections is of a high priority for Earth system modeling in the future IPCC and other assessments. To achieve this goal, we suggest that (1) model structures should reflect real-world processes, (2) parameters should be calibrated to match model outputs with observations, and (3) external forcing variables should accurately prescribe the environmental conditions that soils experience. First, most soil C cycle models simulate C input from litter production and C release through decomposition. The latter process has traditionally been represented by first-order decay functions, regulated primarily by temperature, moisture, litter quality, and soil texture. While this formulation well captures macroscopic soil organic C (SOC) dynamics, better understanding is needed of their underlying mechanisms as related to microbial processes, depth-dependent environmental controls, and other processes that strongly affect soil C dynamics. Second, incomplete use of observations in model parameterization is a major cause of bias in soil C projections from ESMs. Optimal parameter calibration with both pool- and flux-based data sets through data assimilation is among the highest priorities for near-term research to reduce biases among ESMs. Third, external variables are represented inconsistently among ESMs, leading to differences in modeled soil C dynamics. We recommend the implementation of traceability analyses to identify how external variables and model parameterizations influence SOC dynamics in different ESMs. Overall, projections of the terrestrial C sink can be substantially improved when reliable data sets are available to select the most representative model structure, constrain parameters, and prescribe forcing fields.

Soil environmental quality in greenhouse vegetable production systems in eastern China: Current status and management strategies.

PubMed

Hu, Wenyou; Zhang, Yanxia; Huang, Biao; Teng, Ying

2017-03-01

Greenhouse vegetable production (GVP) has become an important source of public vegetable consumption and farmers' income in China. However, various pollutants can be accumulated in GVP soils due to the high cropping index, large agricultural input, and closed environment. Ecological toxicity caused by excessive pollutants' accumulation can then lead to serious health risks. This paper was aimed to systematically review the current status of soil environmental quality, analyze their impact factors, and consequently to propose integrated management strategies for GVP systems. Results indicated a decrease in soil pH, soil salinization, and nutrients imbalance in GVP soils. Fungicides, remaining nutrients, antibiotics, heavy metals, and phthalate esters were main pollutants accumulating in GVP soils comparing to surrounding open field soils. Degradation of soil ecological function, accumulation of major pollutants in vegetables, deterioration of neighboring water bodies, and potential human health risks has occurred due to the changes of soil properties and accumulation of pollutants such as heavy metals and fungicides in soils. Four dominant factors were identified leading to the above-mentioned issues including heavy application of agricultural inputs, outmoded planting styles with poor environmental protection awareness, old-fashion regulations, unreasonable standards, and ineffective supervisory management. To guarantee a sustainable GVP development, several strategies were suggested to protect and improve soil environmental quality. Implementation of various strategies not only requires the concerted efforts among different stakeholders, but also the whole lifecycle assessment throughout the GVP processes as well as effective enforcement of policies, laws, and regulations. Copyright © 2016 Elsevier Ltd. All rights reserved.

Nitrogen and carbon flow from rock to water: Regulation through soil biogeochemical processes, Mokelumne River watershed, California, and Grand Valley, Colorado

USGS Publications Warehouse

Holloway, J.M.; Smith, R.L.

2005-01-01

Soil denitrification is an ecologically important nitrogen removal mechanism that releases to the atmosphere the greenhouse gas N2O, an intermediate product from the reduction of NO3- to N 2. In this study we evaluate the relationship between soil carbon and denitrification potential in watersheds with bedrock acting as a nonpoint source of nitrogen, testing the hypothesis that nitrate leaching to stream water is in part regulated by denitrification. Two sites, one in a Mediterranean climate and the other in an arid climate, were investigated to understand the interplay between carbon and denitrification potential. Both sites included carbonaceous bedrock with relatively high nitrogen concentrations (> 1,000 mg N kg-1) and had low background nitrogen concentrations in surface and groundwater. There was a net accumulation of carbon and nitrogen in soil relative to the corresponding bedrock, with the exception of carbonaceous shale from the arid site. There the concentration of carbon in the soil (15,620 mg C kg-1) was less than the shale parent (22,460 mg C kg-1), consistent with the bedrock being a source of soil carbon. Rates of denitrification potential (0.5-83 ??g N kg-1 hr-1) derived from laboratory incubations appeared to be related to the ratio of dissolved organic carbon and nitrate extracted from soils. These data indicate that microbial processes such as denitrification can help maintain background nitrogen concentrations to tens of ??M N in relatively undisturbed ecosystems when nitrogen inputs from weathering bedrock are accompanied by sufficient organic carbon concentrations to promote microbial nitrogen transformations.

Overcoming uncertainty with carbonyl sulfide-based GPP estimates: observing and modeling soil COS fluxes in terrestrial ecosystems

NASA Astrophysics Data System (ADS)

Whelan, M.; Hilton, T. W.; Berry, J. A.; Berkelhammer, M. B.; Desai, A. R.; Rastogi, B.; Campbell, J. E.

2015-12-01

Significant carbonyl sulfide (COS) exchange by soils limits the applicability of net ecosystem COS flux observations as a proxy for stomatal trace gas exchange. High frequency measurements of COS over urban and natural ecosystems offer a potential window into processes regulating the carbon and water cycle: photosynthetic carbon uptake and stomatal conductance. COS diffuses through plant stomata and is irreversibly consumed by enzymes involved in photosynthesis. In certain environments, the magnitude of soil COS fluxes may constitute one-quarter of COS uptake by plants. Here we present a way of anticipating conditions when anomalously large soil COS fluxes are likely to occur and be taken into account. Previous studies have pointed to either a tendency for soil uptake of COS from the atmosphere with a soil moisture optimum, or exponential COS production coincident with temperature. Data from field and laboratory studies were used to deconvolve the two processes. CO2 and COS fluxes were observed from forest, desert, grassland, and agricultural soils under a range of temperature and soil moisture conditions. We demonstrate how to estimate temperature and soil moisture impacts on COS soil production based on our cross-site incubations. By building a model of soil COS exchange that combines production and consumption terms, we offer a framework for interpreting the two disparate conclusions about soil COS exchange in previous studies. Such a construction should be used in ecosystem and continental scale modeling of COS fluxes to anticipate where the influence of soil COS exchange needs to be accounted for, resulting in greater utility of carbonyl sulfide as a tracer of plant physiological processes.

Soil respiration in the cold desert environment of the Colorado Plateau (USA): Abiotic regulators and thresholds

USGS Publications Warehouse

Fernandez, D.P.; Neff, J.C.; Belnap, J.; Reynolds, R.L.

2006-01-01

Decomposition is central to understanding ecosystem carbon exchange and nutrient-release processes. Unlike mesic ecosystems, which have been extensively studied, xeric landscapes have received little attention; as a result, abiotic soil-respiration regulatory processes are poorly understood in xeric environments. To provide a more complete and quantitative understanding about how abiotic factors influence soil respiration in xeric ecosystems, we conducted soil- respiration and decomposition-cloth measurements in the cold desert of southeast Utah. Our study evaluated when and to what extent soil texture, moisture, temperature, organic carbon, and nitrogen influence soil respiration and examined whether the inverse-texture hypothesis applies to decomposition. Within our study site, the effect of texture on moisture, as described by the inverse texture hypothesis, was evident, but its effect on decomposition was not. Our results show temperature and moisture to be the dominant abiotic controls of soil respiration. Specifically, temporal offsets in temperature and moisture conditions appear to have a strong control on soil respiration, with the highest fluxes occurring in spring when temperature and moisture were favorable. These temporal offsets resulted in decomposition rates that were controlled by soil moisture and temperature thresholds. The highest fluxes of CO2 occurred when soil temperature was between 10 and 16??C and volumetric soil moisture was greater than 10%. Decomposition-cloth results, which integrate decomposition processes across several months, support the soil-respiration results and further illustrate the seasonal patterns of high respiration rates during spring and low rates during summer and fall. Results from this study suggest that the parameters used to predict soil respiration in mesic ecosystems likely do not apply in cold-desert environments. ?? Springer 2006.

Soil organic carbon dynamics jointly controlled by climate, carbon inputs, soil properties and soil carbon fractions.

PubMed

Luo, Zhongkui; Feng, Wenting; Luo, Yiqi; Baldock, Jeff; Wang, Enli

2017-10-01

Soil organic carbon (SOC) dynamics are regulated by the complex interplay of climatic, edaphic and biotic conditions. However, the interrelation of SOC and these drivers and their potential connection networks are rarely assessed quantitatively. Using observations of SOC dynamics with detailed soil properties from 90 field trials at 28 sites under different agroecosystems across the Australian cropping regions, we investigated the direct and indirect effects of climate, soil properties, carbon (C) inputs and soil C pools (a total of 17 variables) on SOC change rate (r C , Mg C ha -1  yr -1 ). Among these variables, we found that the most influential variables on r C were the average C input amount and annual precipitation, and the total SOC stock at the beginning of the trials. Overall, C inputs (including C input amount and pasture frequency in the crop rotation system) accounted for 27% of the relative influence on r C , followed by climate 25% (including precipitation and temperature), soil C pools 24% (including pool size and composition) and soil properties (such as cation exchange capacity, clay content, bulk density) 24%. Path analysis identified a network of intercorrelations of climate, soil properties, C inputs and soil C pools in determining r C . The direct correlation of r C with climate was significantly weakened if removing the effects of soil properties and C pools, and vice versa. These results reveal the relative importance of climate, soil properties, C inputs and C pools and their complex interconnections in regulating SOC dynamics. Ignorance of the impact of changes in soil properties, C pool composition and C input (quantity and quality) on SOC dynamics is likely one of the main sources of uncertainty in SOC predictions from the process-based SOC models. © 2017 John Wiley & Sons Ltd.

Listeria monocytogenes, a down-to-earth pathogen

PubMed Central

Vivant, Anne-Laure; Garmyn, Dominique; Piveteau, Pascal

2013-01-01

Listeria monocytogenes is the causative agent of the food-borne life threatening disease listeriosis. This pathogenic bacterium received much attention in the endeavor of deciphering the cellular mechanisms that underlie the onset of infection and its ability to adapt to the food processing environment. Although information is available on the presence of L. monocytogenes in many environmental niches including soil, water, plants, foodstuff and animals, understanding the ecology of L. monocytogenes in outdoor environments has received less attention. Soil is an environmental niche of pivotal importance in the transmission of this bacterium to plants and animals. Soil composition, microbial communities and macrofauna are extrinsic edaphic factors that direct the fate of L. monocytogenes in the soil environment. Moreover, farming practices may further affect its incidence. The genome of L. monocytogenes presents an extensive repertoire of genes encoding transport proteins and regulators, a characteristic of the genome of ubiquitous bacteria. Postgenomic analyses bring new insights in the process of soil adaptation. In the present paper focussing on soil, we review these extrinsic and intrinsic factors that drive environmental adaptation of L. monocytogenes. PMID:24350062

Listeria monocytogenes, a down-to-earth pathogen.

PubMed

Vivant, Anne-Laure; Garmyn, Dominique; Piveteau, Pascal

2013-01-01

Listeria monocytogenes is the causative agent of the food-borne life threatening disease listeriosis. This pathogenic bacterium received much attention in the endeavor of deciphering the cellular mechanisms that underlie the onset of infection and its ability to adapt to the food processing environment. Although information is available on the presence of L. monocytogenes in many environmental niches including soil, water, plants, foodstuff and animals, understanding the ecology of L. monocytogenes in outdoor environments has received less attention. Soil is an environmental niche of pivotal importance in the transmission of this bacterium to plants and animals. Soil composition, microbial communities and macrofauna are extrinsic edaphic factors that direct the fate of L. monocytogenes in the soil environment. Moreover, farming practices may further affect its incidence. The genome of L. monocytogenes presents an extensive repertoire of genes encoding transport proteins and regulators, a characteristic of the genome of ubiquitous bacteria. Postgenomic analyses bring new insights in the process of soil adaptation. In the present paper focussing on soil, we review these extrinsic and intrinsic factors that drive environmental adaptation of L. monocytogenes.

Water, energy, and biogeochemical budgets investigation at Panola Mountain research watershed, Stockbridge, Georgia; a research plan

USGS Publications Warehouse

Huntington, T.G.; Hooper, R.P.; Peters, N.E.; Bullen, T.D.; Kendall, Carol

1993-01-01

The Panola Mountain Research Watershed (PMRW), located in the Panola Mountain State Conservation Park near Stockbridge, Georgia has been selected as a core research watershed under the Water, Energy and Biogeochemical Budgets (WEBB) research initiative of the U.S. Geological Survey (USGS) Global Climate Change Program. This research plan describes ongoing and planned research activities at PMRW from 1984 to 1994. Since 1984, PMRW has been studied as a geochemical process research site under the U.S. Acid Precipitation Thrust Program. Research conducted under this Thrust Program focused on the estimation of dry atmospheric deposition, short-term temporal variability of streamwater chemistry, sulfate adsorption characteristics of the soils, groundwater chemistry, throughfall chemistry, and streamwater quality. The Acid Precipitation Thrust Program continues (1993) to support data collection and a water-quality laboratory. Proposed research to be supported by the WEBB program is organized in 3 interrelated categories: streamflow generation and water-quality evolution, weathering and geochemical evolution, and regulation of soil-water chemistry. Proposed research on streamflow generation and water-quality evolution will focus on subsurface water movement, its influence in streamflow generation, and the associated chemical changes of the water that take place along its flowpath. Proposed research on weathering and geochemical evolution will identify the sources of cations observed in the streamwater at Panola Mountain and quantify the changes in cation source during storms. Proposed research on regulation of soil-water chemistry will focus on the poorly understood processes that regulate soil-water and groundwater chemistry. (USGS)

State of the Art in Large-Scale Soil Moisture Monitoring

NASA Technical Reports Server (NTRS)

Ochsner, Tyson E.; Cosh, Michael Harold; Cuenca, Richard H.; Dorigo, Wouter; Draper, Clara S.; Hagimoto, Yutaka; Kerr, Yan H.; Larson, Kristine M.; Njoku, Eni Gerald; Small, Eric E.;

Modeling Central Carbon Metabolic Processes in Soil Microbial Communities: Comparing Measured With Modeled

NASA Astrophysics Data System (ADS)

Dijkstra, P.; Fairbanks, D.; Miller, E.; Salpas, E.; Hagerty, S.

2013-12-01

Understanding the mechanisms regulating C cycling is hindered by our inability to directly observe and measure the biochemical processes of glycolysis, pentose phosphate pathway, and TCA cycle in intact and complex microbial communities. Position-specific 13C labeled metabolic tracer probing is proposed as a new way to study microbial community energy production, biosynthesis, C use efficiency (the proportion of substrate incorporated into microbial biomass), and enables the quantification of C fluxes through the central C metabolic network processes (Dijkstra et al 2011a,b). We determined the 13CO2 production from U-13C, 1-13C, 2-13C, 3-13C, 4-13C, 5-13C, and 6-13C labeled glucose and 1-13C and 2,3-13C pyruvate in parallel incubations in three soils along an elevation gradient. Qualitative and quantitative interpretation of the results indicate a high pentose phosphate pathway activity in soils. Agreement between modeled and measured CO2 production rates for the six C-atoms of 13C-labeled glucose indicate that the metabolic model used is appropriate for soil community processes, but that improvements can be made. These labeling and modeling techniques may improve our ability to analyze the biochemistry and (eco)physiology of intact microbial communities. Dijkstra, P., Blankinship, J.C., Selmants, P.C., Hart, S.C., Koch, G.W., Schwartz, E., Hungate, B.A., 2011a. Probing C flux patterns of soil microbial metabolic networks using parallel position-specific tracer labeling. Soil Biology & Biochemistry 43, 126-132. Dijkstra, P., Dalder, J.J., Selmants, P.C., Hart, S.C., Koch, G.W., Schwartz, E., Hungate, B.A., 2011b. Modeling soil metabolic processes using isotopologue pairs of position-specific 13C-labeled glucose and pyruvate. Soil Biology & Biochemistry 43, 1848-1857.

From where and how do plants and microbes get nitrogen? Revisiting paradigms of soil nitrogen availability

NASA Astrophysics Data System (ADS)

Grandy, S.

2017-12-01

Despite decades of research progress, soil biogeochemists are still debating in different ecosystems what pools and fluxes provide N to plants and microbes. Current concepts argue that N mineralization regulates the supply of N for plants and microorganisms, and is a `gatekeeper' for environmental N losses. The prevailing paradigm also argues that the chemistry of plant litter inputs (e.g. initial C:N ratio) primarily drives N mineralization rates, existing as a universal regulator of a switch between net N immobilization versus net N mineralization. However, decomposer community enzyme upregulation drives proteolysis, the exocellular first step in N mineralization; then, cellular carbon use efficiency and stoichiometry are internal microbial physiological processes driving ammonification rates. Further, N mineralization is only one of multiple, microbial-driven sequences in soils that regulate bioavailable N. Emerging evidence and new conceptual models from both the ecological and biogeoscience communities argue that while depolymerization is a critical first step, clay minerals may be an important and overlooked mediator of bioavailable N, and especially in the soil rhizosphere they are both a large source and sink for N. Mineral-associated organic matter (MAOM) can hold up to 20x more N than particulate fractions, is a rich reservoir of proteins, amino acids, and nucleic acids, and is mobilized by microbes and their interactions with plants. We use this and other emerging information to develop a new model of N availability in soils, highlighting: mineralization is strongly influenced by microbial physiological traits; the various steps in N mineralization have different drivers and can become decoupled; minerals are a strong sink and source for bioavailable N that is regulated by interactions between plants and microbial communities; and plants are a driving force in the soil N cycle for their ability to prime mineral N, and influence the structure and function of microbial communities. Plants and microbes are far from passive players in the cycling of N in soils, actively regulating N mineralization, interactions of bioavailable N with minerals, and ultimately plant N uptake.

Understanding soil erosion impacts in temperate agroecosystems: bridging the gap between geomorphology and soil ecology

NASA Astrophysics Data System (ADS)

Baxter, C.; Rowan, J. S.; McKenzie, B. M.; Neilson, R.

2013-04-01

Soil is a key asset of natural capital, providing a myriad of goods and ecosystem services that sustain life through regulating, supporting and provisioning roles, delivered by chemical, physical and biological processes. One of the greatest threats to soil is accelerated erosion, which raises a natural process to unsustainable levels, and has downstream consequences (e.g. economic, environmental and social). Global intensification of agroecosystems is a major cause of soil erosion which, in light of predicted population growth and increased demand for food security, will continue or increase. Elevated erosion and transport is common in agroecosystems and presents a multi-disciplinary problem with direct physical impacts (e.g. soil loss), other less tangible impacts (e.g. loss of ecosystem productivity), and indirect downstream effects that necessitate an integrated approach to effectively address the problem. Climate is also likely to increase susceptibility of soil to erosion. Beyond physical response, the consequences of erosion on soil biota have hitherto been ignored, yet biota play a fundamental role in ecosystem service provision. To our knowledge few studies have addressed the gap between erosion and consequent impacts on soil biota. Transport and redistribution of soil biota by erosion is poorly understood, as is the concomitant impact on biodiversity and ability of soil to deliver the necessary range of ecosystem services to maintain function. To investigate impacts of erosion on soil biota a two-fold research approach is suggested. Physical processes involved in redistribution should be characterised and rates of transport and redistribution quantified. Similarly, cumulative and long-term impacts of biota erosion should be considered. Understanding these fundamental aspects will provide a basis upon which mitigation strategies can be considered.

Processes regulating progressive nitrogen limitation under elevated carbon dioxide: a meta-analysis

NASA Astrophysics Data System (ADS)

Liang, Junyi; Qi, Xuan; Souza, Lara; Luo, Yiqi

2016-05-01

The nitrogen (N) cycle has the potential to regulate climate change through its influence on carbon (C) sequestration. Although extensive research has explored whether or not progressive N limitation (PNL) occurs under CO2 enrichment, a comprehensive assessment of the processes that regulate PNL is still lacking. Here, we quantitatively synthesized the responses of all major processes and pools in the terrestrial N cycle with meta-analysis of CO2 experimental data available in the literature. The results showed that CO2 enrichment significantly increased N sequestration in the plant and litter pools but not in the soil pool, partially supporting one of the basic assumptions in the PNL hypothesis that elevated CO2 results in more N sequestered in organic pools. However, CO2 enrichment significantly increased the N influx via biological N fixation and the loss via N2O emission, but decreased the N efflux via leaching. In addition, no general diminished CO2 fertilization effect on plant growth was observed over time up to the longest experiment of 13 years. Overall, our analyses suggest that the extra N supply by the increased biological N fixation and decreased leaching may potentially alleviate PNL under elevated CO2 conditions in spite of the increases in plant N sequestration and N2O emission. Moreover, our syntheses indicate that CO2 enrichment increases soil ammonium (NH4+) to nitrate (NO3-) ratio. The changed NH4+/NO3- ratio and subsequent biological processes may result in changes in soil microenvironments, above-belowground community structures and associated interactions, which could potentially affect the terrestrial biogeochemical cycles. In addition, our data synthesis suggests that more long-term studies, especially in regions other than temperate ones, are needed for comprehensive assessments of the PNL hypothesis.

Ectomycorrhizal fungi slow soil carbon cycling.

PubMed

Averill, Colin; Hawkes, Christine V

2016-08-01

Respiration of soil organic carbon is one of the largest fluxes of CO2 on earth. Understanding the processes that regulate soil respiration is critical for predicting future climate. Recent work has suggested that soil carbon respiration may be reduced by competition for nitrogen between symbiotic ectomycorrhizal fungi that associate with plant roots and free-living microbial decomposers, which is consistent with increased soil carbon storage in ectomycorrhizal ecosystems globally. However, experimental tests of the mycorrhizal competition hypothesis are lacking. Here we show that ectomycorrhizal roots and hyphae decrease soil carbon respiration rates by up to 67% under field conditions in two separate field exclusion experiments, and this likely occurs via competition for soil nitrogen, an effect larger than 2 °C soil warming. These findings support mycorrhizal competition for nitrogen as an independent driver of soil carbon balance and demonstrate the need to understand microbial community interactions to predict ecosystem feedbacks to global climate. © 2016 John Wiley & Sons Ltd/CNRS.

Changes in turnover rather than production regulate biomass of ectomycorrhizal fungal mycelium across a Pinus sylvestris chronosequence.

PubMed

Hagenbo, Andreas; Clemmensen, Karina E; Finlay, Roger D; Kyaschenko, Julia; Lindahl, Björn D; Fransson, Petra; Ekblad, Alf

2017-04-01

In boreal forest soils, ectomycorrhizal fungi are fundamentally important for carbon (C) dynamics and nutrient cycling. Although their extraradical mycelium (ERM) is pivotal for processes such as soil organic matter build-up and nitrogen cycling, very little is known about its dynamics and regulation. In this study, we quantified ERM production and turnover, and examined how these two processes together regulated standing ERM biomass in seven sites forming a chronosequence of 12- to 100-yr-old managed Pinus sylvestris forests. This was done by determining ERM biomass, using ergosterol as a proxy, in sequentially harvested in-growth mesh bags and by applying mathematical models. Although ERM production declined with increasing forest age from 1.2 to 0.5 kg ha -1  d -1 , the standing biomass increased from 50 to 112 kg ha -1 . This was explained by a drastic decline in mycelial turnover from seven times to one time per year with increasing forest age, corresponding to mean residence times from 25 d up to 1 yr. Our results demonstrate that ERM turnover is the main factor regulating biomass across differently aged forest stands. Explicit inclusion of ERM parameters in forest ecosystem C models may significantly improve their capacity to predict responses of mycorrhiza-mediated processes to management and environmental changes. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Ecohydrologic processes and soil thickness feedbacks control limestone-weathering rates in a karst landscape

DOE PAGES

Dong, Xiaoli; Cohen, Matthew J.; Martin, Jonathan B.; ...

2018-05-18

Here, chemical weathering of bedrock plays an essential role in the formation and evolution of Earth's critical zone. Over geologic time, the negative feedback between temperature and chemical weathering rates contributes to the regulation of Earth climate. The challenge of understanding weathering rates and the resulting evolution of critical zone structures lies in complicated interactions and feedbacks among environmental variables, local ecohydrologic processes, and soil thickness, the relative importance of which remains unresolved. We investigate these interactions using a reactive-transport kinetics model, focusing on a low-relief, wetland-dominated karst landscape (Big Cypress National Preserve, South Florida, USA) as a case study.more » Across a broad range of environmental variables, model simulations highlight primary controls of climate and soil biological respiration, where soil thickness both supplies and limits transport of biologically derived acidity. Consequently, the weathering rate maximum occurs at intermediate soil thickness. The value of the maximum weathering rate and the precise soil thickness at which it occurs depend on several environmental variables, including precipitation regime, soil inundation, vegetation characteristics, and rate of groundwater drainage. Simulations for environmental conditions specific to Big Cypress suggest that wetland depressions in this landscape began to form around beginning of the Holocene with gradual dissolution of limestone bedrock and attendant soil development, highlighting large influence of age-varying soil thickness on weathering rates and consequent landscape development. While climatic variables are often considered most important for chemical weathering, our results indicate that soil thickness and biotic activity are equally important. Weathering rates reflect complex interactions among soil thickness, climate, and local hydrologic and biotic processes, which jointly shape the supply and delivery of chemical reactants, and the resulting trajectories of critical zone and karst landscape development.« less

Ecohydrologic processes and soil thickness feedbacks control limestone-weathering rates in a karst landscape

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dong, Xiaoli; Cohen, Matthew J.; Martin, Jonathan B.

Here, chemical weathering of bedrock plays an essential role in the formation and evolution of Earth's critical zone. Over geologic time, the negative feedback between temperature and chemical weathering rates contributes to the regulation of Earth climate. The challenge of understanding weathering rates and the resulting evolution of critical zone structures lies in complicated interactions and feedbacks among environmental variables, local ecohydrologic processes, and soil thickness, the relative importance of which remains unresolved. We investigate these interactions using a reactive-transport kinetics model, focusing on a low-relief, wetland-dominated karst landscape (Big Cypress National Preserve, South Florida, USA) as a case study.more » Across a broad range of environmental variables, model simulations highlight primary controls of climate and soil biological respiration, where soil thickness both supplies and limits transport of biologically derived acidity. Consequently, the weathering rate maximum occurs at intermediate soil thickness. The value of the maximum weathering rate and the precise soil thickness at which it occurs depend on several environmental variables, including precipitation regime, soil inundation, vegetation characteristics, and rate of groundwater drainage. Simulations for environmental conditions specific to Big Cypress suggest that wetland depressions in this landscape began to form around beginning of the Holocene with gradual dissolution of limestone bedrock and attendant soil development, highlighting large influence of age-varying soil thickness on weathering rates and consequent landscape development. While climatic variables are often considered most important for chemical weathering, our results indicate that soil thickness and biotic activity are equally important. Weathering rates reflect complex interactions among soil thickness, climate, and local hydrologic and biotic processes, which jointly shape the supply and delivery of chemical reactants, and the resulting trajectories of critical zone and karst landscape development.« less

Belowground processes regulate ecosystem nitrogen retention during a multi-year forest dieback event

NASA Astrophysics Data System (ADS)

Nave, L. E.; Le Moine, J.; Gough, C. M.; Vogel, C.; Nadelhoffer, K. J.; Curtis, P.

2013-12-01

In the absence of disturbances, forests typically have strong retention capacity for nitrogen (N), which is internally recycled between soil, microbial and plant pools. However, disturbances that trigger senescence or mortality of forest vegetation may alter internal N cycling processes and lead to the loss of ecosystem N retention capacity. Here, we present an assessment of the role played by belowground processes in governing ecosystem N cycling and retention during an experimental disturbance that killed the dominant canopy taxa in a Great Lakes forest over a 4-year period. After applying stem girdling to hasten the age-related senescence of the dominant taxa (Populus and Betula spp.; ~35% of the basal area), we observed a 38% decrease in stand-level allocation of nonstructural carbohydrates to fine roots, which triggered a tenfold increase in the rate of fine root turnover and increased soil NH4+ and NO3- availability. Elevated soil N availability decreased mycorrhizal hyphal foraging and N uptake, effectively down-regulating the role of symbiotic fungi in the N nutrition of the residual (longer-lived) tree taxa. However, even as residual trees took up less N from mycorrhizal sources, their overall N uptake increased and served to offset the loss of the dominant taxa. The net result of this offset was that canopy N stocks remained constant through the disturbance period and there was no appreciable loss of ecosystem N stocks due to leaching or gaseous export. In sum, the cascade of changes in root, microbial, and soil processes during this experiment indicates that these interdependent components of the belowground system comprised a mechanism responsible for retention and redistribution of ecosystem N stocks during the disturbance period.

[Mechanism of nutrient preservation and supply by soil and its regulation. IV. Fertility regulation and improvement of brown earth type vegetable garden soil and their essence].

PubMed

Chen, L; Zhou, L

2000-08-01

Pot experiment studies on the fertility regulation and improvement of fertile and infertile brown earth type vegetable garden soils and their functionary essence show that under conditions of taking different soil fertility improvement measures, the nutrient contents in fertile and infertile soils were not always higher than the controls, but the aggregation densities of soil microaggregates were increased, and the proportion of different microaggregates was more rational. There was no significant relationship between soil productivity and soil microaggregates proportion. It is proved that the essence of soil fertility improvement consists in the ultimate change of the preservation and supply capacities of soil nutrients, and the proportion of soil microaggregates could be an integrative index to evaluate the level of soil fertility and the efficiency of soil improvement.

Opportunities and barriers to on-farm composting and compost application: A case study from northwestern Europe.

PubMed

Viaene, J; Van Lancker, J; Vandecasteele, B; Willekens, K; Bijttebier, J; Ruysschaert, G; De Neve, S; Reubens, B

2016-02-01

Maintaining and increasing soil quality and fertility in a sustainable way is an important challenge for modern agriculture. The burgeoning bioeconomy is likely to put further pressure on soil resources unless they are managed carefully. Compost has the potential to be an effective soil improver because of its multiple beneficial effects on soil quality. Additionally, it fits within the bioeconomy vision because it can valorize biomass from prior biomass processing or valorize biomass unsuitable for other processes. However, compost is rarely used in intensive agriculture, especially in regions with high manure surpluses. The aim of this research is to identify the barriers to on-farm composting and the application of compost in agriculture, using a mixed method approach for the case of Flanders. The significance of the 28 identified barriers is analyzed and they are categorized as market and financial, policy and institutional, scientific and technological and informational and behavioral barriers. More specifically, the shortage of woody biomass, strict regulation, considerable financial and time investment, and lack of experience and knowledge are hindering on-farm composting. The complex regulation, manure surplus, variable availability and transport of compost, and variable compost quality and composition are barriers to apply compost. In conclusion, five recommendations are suggested that could alleviate certain hindering factors and thus increase attractiveness of compost use in agriculture. Copyright © 2015 Elsevier Ltd. All rights reserved.

Abiotic and seasonal control of soil-produced CO2 efflux in karstic ecosystems located in Oceanic and Mediterranean climates

NASA Astrophysics Data System (ADS)

Garcia-Anton, Elena; Cuezva, Soledad; Fernandez-Cortes, Angel; Alvarez-Gallego, Miriam; Pla, Concepcion; Benavente, David; Cañaveras, Juan Carlos; Sanchez-Moral, Sergio

2017-09-01

This study characterizes the processes involved in seasonal CO2 exchange between soils and shallow underground systems and explores the contribution of the different biotic and abiotic sources as a function of changing weather conditions. We spatially and temporally investigated five karstic caves across the Iberian Peninsula, which presented different microclimatic, geologic and geomorphologic features. The locations present Mediterranean and Oceanic climates. Spot air sampling of CO2 (g) and δ13CO2 in the caves, soils and outside atmospheric air was periodically conducted. The isotopic ratio of the source contribution enhancing the CO2 concentration was calculated using the Keeling model. We compared the isotopic ratio of the source in the soil (δ13Cs-soil) with that in the soil-underground system (δ13Cs-system). Although the studied field sites have different features, we found common seasonal trends in their values, which suggests a climatic control over the soil air CO2 and the δ13CO2 of the sources of CO2 in the soil (δ13Cs-soil) and the system (δ13Cs-system). The roots respiration and soil organic matter degradation are the main source of CO2 in underground environments, and the inlet of the gas is mainly driven by diffusion and advection. Drier and warmer conditions enhance soil-exterior CO2 interchange, reducing the CO2 concentration and increasing the δ13CO2 of the soil air. Moreover, the isotopic ratio of the source of CO2 in both the soil and the system tends to heavier values throughout the dry and warm season. We conclude that seasonal variations of soil CO2 concentration and its 13C/12C isotopic ratio are mainly regulated by thermo-hygrometric conditions. In cold and wet seasons, the increase of soil moisture reduces soil diffusivity and allows the storage of CO2 in the subsoil. During dry and warm seasons, the evaporation of soil water favours diffusive and advective transport of soil-derived CO2 to the atmosphere. The soil CO2 diffusion is enough important during this season to modify the isotopic ratio of soil produced CO2 (3-6‰ heavier). Drought induces release of CO2 with an isotopic ratio heavier than produced by organic sources. Consequently, climatic conditions drive abiotic processes that turn regulate a seasonal storage of soil-produced CO2 within soil and underground systems. The results here obtained imply that abiotic emissions of soil-produced CO2 must be an inherent consequence of droughts, which intensification has been forecasted at global scale in the next 100 years.

Coordinated approaches to quantify long-term ecosystem dynamics in response to global change

Treesearch

Yiqi Luo; Jerry Melillo; Shuli Niu; Claus Beier; James S. Clark; Aime E.T. Classen; Eric Dividson; Jeffrey S. Dukes; R. Dave Evans; Christopher B. Field; Claudia I. Czimczik; Michael Keller; Bruce A. Kimball; Lara M. Kueppers; Richard J. Norby; Shannon L. Pelini; Elise Pendall; Edward Rastetter; Johan Six; Melinda Smith; Mark G. Tjoelker; Margaret S. Torn

2011-01-01

Many serious ecosystem consequences of climate change will take decades or even centuries to emerge. Long-term ecological responses to global change are strongly regulated by slow processes, such as changes in species composition, carbon dynamics in soil and by long-lived plants, and accumulation of nutrient capitals. Understanding and predicting these processes...

Adaptive management for soil ecosystem services

USGS Publications Warehouse

Birge, Hannah E.; Bevans, Rebecca A.; Allen, Craig R.; Angeler, David G.; Baer, Sara G.; Wall, Diana H.

2016-01-01

Ecosystem services provided by soil include regulation of the atmosphere and climate, primary (including agricultural) production, waste processing, decomposition, nutrient conservation, water purification, erosion control, medical resources, pest control, and disease mitigation. The simultaneous production of these multiple services arises from complex interactions among diverse aboveground and belowground communities across multiple scales. When a system is mismanaged, non-linear and persistent losses in ecosystem services can arise. Adaptive management is an approach to management designed to reduce uncertainty as management proceeds. By developing alternative hypotheses, testing these hypotheses and adjusting management in response to outcomes, managers can probe dynamic mechanistic relationships among aboveground and belowground soil system components. In doing so, soil ecosystem services can be preserved and critical ecological thresholds avoided. Here, we present an adaptive management framework designed to reduce uncertainty surrounding the soil system, even when soil ecosystem services production is not the explicit management objective, so that managers can reach their management goals without undermining soil multifunctionality or contributing to an irreversible loss of soil ecosystem services.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Luo, Yiqi; Ahlström, Anders; Allison, Steven D.

Soil carbon (C) is a critical component of Earth system models (ESMs) and its diverse representations are a major source of the large spread across models in the terrestrial C sink from the 3rd to 5th assessment reports of the Intergovernmental Panel on Climate Change (IPCC). Improving soil C projections is of a high priority for Earth system modeling in the future IPCC and other assessments. To achieve this goal, we suggest that (1) model structures should reflect real-world processes, (2) parameters should be calibrated to match model outputs with observations, and (3) external forcing variables should accurately prescribe themore » environmental conditions that soils experience. Firstly, most soil C cycle models simulate C input from litter production and C release through decomposition. The latter process has traditionally been represented by 1st-order decay functions, regulated primarily by temperature, moisture, litter quality, and soil texture. While this formulation well captures macroscopic SOC dynamics, better understanding is needed of their underlying mechanisms as related to microbial processes, depth-dependent environmental controls, and other processes that strongly affect soil C dynamics. Secondly, incomplete use of observations in model parameterization is a major cause of bias in soil C projections from ESMs. Optimal parameter calibration with both pool- and flux-based datasets through data assimilation is among the highest priorities for near-term research to reduce biases among ESMs. Thirdly, external variables are represented inconsistently among ESMs, leading to differences in modeled soil C dynamics. We recommend the implementation of traceability analyses to identify how external variables and model parameterizations influence SOC dynamics in different ESMs. Overall, projections of the terrestrial C sink can be substantially improved when reliable datasets are available to select the most representative model structure, constrain parameters, and prescribe forcing fields.« less

Superfund record of decision (EPA Region 4): Milan Army Ammunition Plant, operable units 3 and 4, Milan, TN, October 2, 1995

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

1996-03-01

This decision document presents the selected remedial action for the soil within the northern industrial area of Milan Army Ammunition Plant, Milan, Tennessee. The goal of the cleanup activities at the northern industrial areas of MAAP is to remove the soil contaminated with explosives compounds above risk-based levels. The excavated soil will be treated using a bioremediation process to reduce the concentrations of explosives compounds, the toxicity of the leachate, and the mobility of the remaining organic compounds. The treated soil will then be placed in an on-site solid waste landfill in compliance with State of Tennessee regulations. Additionally, inmore » areas where excavation of the explosives-contaminated soil is infeasible, the soil will be covered with an engineered cap to prevent worker exposure to the explosives compounds and prevent leaching of these compounds to groundwater.« less

Soil structural quality assessment for soil protection regulation

NASA Astrophysics Data System (ADS)

Johannes, Alice; Boivin, Pascal

2017-04-01

Soil quality assessment is rapidly developing worldwide, though mostly focused on the monitoring of arable land and soil fertility. Soil protection regulations assess soil quality differently, focusing on priority pollutants and threshold values. The soil physical properties are weakly considered, due to lack of consensus and experimental difficulties faced with characterization. Non-disputable, easy to perform and inexpensive methods should be available for environmental regulation to be applied, which is unfortunately not the case. As a consequence, quantitative soil physical protection regulation is not applied, and inexpensive soil physical quality indicators for arable soil management are not available. Overcoming these limitations was the objective of a research project funded by the Swiss federal office for environment (FOEN). The main results and the perspectives of application are given in this presentation. A first step of the research was to characterize soils in a good structural state (reference soils) under different land use. The structural quality was assessed with field expertise and Visual Evaluation of the Soil Structure (VESS), and the physical properties were assessed with Shrinkage analysis. The relationships between the physical properties and the soil constituents were linear and highly determined. They represent the reference properties of the corresponding soils. In a second step, the properties of physically degraded soils were analysed and compared to the reference properties. This allowed defining the most discriminant parameters departing the different structure qualities and their threshold limits. Equivalent properties corresponding to these parameters but inexpensive and easy to determine were defined and tested. More than 90% of the samples were correctly classed with this method, which meets, therefore, the requirements for practical application in regulation. Moreover, result-oriented agri-environmental schemes for soil quality are now proposed to farmers based on these indicators.

Mapping technological and biophysical capacities of watersheds to regulate floods

USGS Publications Warehouse

Mogollón, Beatriz; Villamagna, Amy M.; Frimpong, Emmanuel A.; Angermeier, Paul

2016-01-01

Flood regulation is a widely valued and studied service provided by watersheds. Flood regulation benefits people directly by decreasing the socio-economic costs of flooding and indirectly by its positive impacts on cultural (e.g., fishing) and provisioning (e.g., water supply) ecosystem services. Like other regulating ecosystem services (e.g., pollination, water purification), flood regulation is often enhanced or replaced by technology, but the relative efficacy of natural versus technological features in controlling floods has scarcely been examined. In an effort to assess flood regulation capacity for selected urban watersheds in the southeastern United States, we: (1) used long-term flood records to assess relative influence of technological and biophysical indicators on flood magnitude and duration, (2) compared the widely used runoff curve number (RCN) approach for assessing the biophysical capacity to regulate floods to an alternative approach that acknowledges land cover and soil properties separately, and (3) mapped technological and biophysical flood regulation capacities based on indicator importance-values derived for flood magnitude and duration. We found that watersheds with high biophysical (via the alternative approach) and technological capacities lengthened the duration and lowered the peak of floods. We found the RCN approach yielded results opposite that expected, possibly because it confounds soil and land cover processes, particularly in urban landscapes, while our alternative approach coherently separates these processes. Mapping biophysical (via the alternative approach) and technological capacities revealed great differences among watersheds. Our study improves on previous mapping of flood regulation by (1) incorporating technological capacity, (2) providing high spatial resolution (i.e., 10-m pixel) maps of watershed capacities, and (3) deriving importance-values for selected landscape indicators. By accounting for technology that enhances or replaces natural flood regulation, our approach enables watershed managers to make more informed choices in their flood-control investments.

A global analysis of soil microbial biomass carbon, nitrogen and phosphorus in terrestrial ecosystems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xu, Xiaofeng; Thornton, Peter E; Post, Wilfred M

2013-01-01

Soil microbes play a pivotal role in regulating land-atmosphere interactions; the soil microbial biomass carbon (C), nitrogen (N), phosphorus (P) and C:N:P stoichiometry are important regulators for soil biogeochemical processes; however, the current knowledge on magnitude, stoichiometry, storage, and spatial distribution of global soil microbial biomass C, N, and P is limited. In this study, 3087 pairs of data points were retrieved from 281 published papers and further used to summarize the magnitudes and stoichiometries of C, N, and P in soils and soil microbial biomass at global- and biome-levels. Finally, global stock and spatial distribution of microbial biomass Cmore » and N in 0-30 cm and 0-100 cm soil profiles were estimated. The results show that C, N, and P in soils and soil microbial biomass vary substantially across biomes; the fractions of soil nutrient C, N, and P in soil microbial biomass are 1.6% in a 95% confidence interval of (1.5%-1.6%), 2.9% in a 95% confidence interval of (2.8%-3.0%), and 4.4% in a 95% confidence interval of (3.9%-5.0%), respectively. The best estimates of C:N:P stoichiometries for soil nutrients and soil microbial biomass are 153:11:1, and 47:6:1, respectively, at global scale, and they vary in a wide range among biomes. Vertical distribution of soil microbial biomass follows the distribution of roots up to 1 m depth. The global stock of soil microbial biomass C and N were estimated to be 15.2 Pg C and 2.3 Pg N in the 0-30 cm soil profiles, and 21.2 Pg C and 3.2 Pg N in the 0-100 cm soil profiles. We did not estimate P in soil microbial biomass due to data shortage and insignificant correlation with soil total P and climate variables. The spatial patterns of soil microbial biomass C and N were consistent with those of soil organic C and total N, i.e. high density in northern high latitude, and low density in low latitudes and southern hemisphere.« less

Toward more realistic projections of soil carbon dynamics by Earth system models

DOE PAGES

Luo, Yiqi; Ahlstrom, Anders; Allison, Steven D.; ...

2016-01-21

Soil carbon (C) is a critical component of Earth system models (ESMs), and its diverse representations are a major source of the large spread across models in the terrestrial C sink from the third to fifth assessment reports of the Intergovernmental Panel on Climate Change (IPCC). Improving soil C projections is of a high priority for Earth system modeling in the future IPCC and other assessments. To achieve this goal, we suggest that (1) model structures should reflect real-world processes, (2) parameters should be calibrated to match model outputs with observations, and (3) external forcing variables should accurately prescribe themore » environmental conditions that soils experience. First, most soil C cycle models simulate C input from litter production and C release through decomposition. The latter process has traditionally been represented by first-order decay functions, regulated primarily by temperature, moisture, litter quality, and soil texture. While this formulation well captures macroscopic soil organic C (SOC) dynamics, better understanding is needed of their underlying mechanisms as related to microbial processes, depth-dependent environmental controls, and other processes that strongly affect soil C dynamics. Second, incomplete use of observations in model parameterization is a major cause of bias in soil C projections from ESMs. Optimal parameter calibration with both pool-and flux-based data sets through data assimilation is among the highest priorities for near-term research to reduce biases among ESMs. Third, external variables are represented inconsistently among ESMs, leading to differences in modeled soil C dynamics. Furthermore, we recommend the implementation of traceability analyses to identify how external variables and model parameterizations influence SOC dynamics in different ESMs. Overall, projections of the terrestrial C sink can be substantially improved when reliable data sets are available to select the most representative model structure, constrain parameters, and prescribe forcing fields.« less

Soil fauna: key to new carbon models

NASA Astrophysics Data System (ADS)

Filser, Juliane; Faber, Jack H.; Tiunov, Alexei V.; Brussaard, Lijbert; Frouz, Jan; De Deyn, Gerlinde; Uvarov, Alexei V.; Berg, Matty P.; Lavelle, Patrick; Loreau, Michel; Wall, Diana H.; Querner, Pascal; Eijsackers, Herman; José Jiménez, Juan

2016-11-01

Soil organic matter (SOM) is key to maintaining soil fertility, mitigating climate change, combatting land degradation, and conserving above- and below-ground biodiversity and associated soil processes and ecosystem services. In order to derive management options for maintaining these essential services provided by soils, policy makers depend on robust, predictive models identifying key drivers of SOM dynamics. Existing SOM models and suggested guidelines for future SOM modelling are defined mostly in terms of plant residue quality and input and microbial decomposition, overlooking the significant regulation provided by soil fauna. The fauna controls almost any aspect of organic matter turnover, foremost by regulating the activity and functional composition of soil microorganisms and their physical-chemical connectivity with soil organic matter. We demonstrate a very strong impact of soil animals on carbon turnover, increasing or decreasing it by several dozen percent, sometimes even turning C sinks into C sources or vice versa. This is demonstrated not only for earthworms and other larger invertebrates but also for smaller fauna such as Collembola. We suggest that inclusion of soil animal activities (plant residue consumption and bioturbation altering the formation, depth, hydraulic properties and physical heterogeneity of soils) can fundamentally affect the predictive outcome of SOM models. Understanding direct and indirect impacts of soil fauna on nutrient availability, carbon sequestration, greenhouse gas emissions and plant growth is key to the understanding of SOM dynamics in the context of global carbon cycling models. We argue that explicit consideration of soil fauna is essential to make realistic modelling predictions on SOM dynamics and to detect expected non-linear responses of SOM dynamics to global change. We present a decision framework, to be further developed through the activities of KEYSOM, a European COST Action, for when mechanistic SOM models include soil fauna. The research activities of KEYSOM, such as field experiments and literature reviews, together with dialogue between empiricists and modellers, will inform how this is to be done.

Modeling thermal dynamics of active layer soils and near-surface permafrost using a fully coupled water and heat transport model

USGS Publications Warehouse

Jiang, Yueyang; Zhuang, Qianlai; O'Donnell, Jonathan A.

2012-01-01

Thawing and freezing processes are key components in permafrost dynamics, and these processes play an important role in regulating the hydrological and carbon cycles in the northern high latitudes. In the present study, we apply a well-developed soil thermal model that fully couples heat and water transport, to simulate the thawing and freezing processes at daily time steps across multiple sites that vary with vegetation cover, disturbance history, and climate. The model performance was evaluated by comparing modeled and measured soil temperatures at different depths. We use the model to explore the influence of climate, fire disturbance, and topography (north- and south-facing slopes) on soil thermal dynamics. Modeled soil temperatures agree well with measured values for both boreal forest and tundra ecosystems at the site level. Combustion of organic-soil horizons during wildfire alters the surface energy balance and increases the downward heat flux through the soil profile, resulting in the warming and thawing of near-surface permafrost. A projection of 21st century permafrost dynamics indicates that as the climate warms, active layer thickness will likely increase to more than 3 meters in the boreal forest site and deeper than one meter in the tundra site. Results from this coupled heat-water modeling approach represent faster thaw rates than previously simulated in other studies. We conclude that the discussed soil thermal model is able to well simulate the permafrost dynamics and could be used as a tool to analyze the influence of climate change and wildfire disturbance on permafrost thawing.

Empirical relationships between soil moisture, albedo, and the planetary boundary layer height: a two-layer bucket model approach

NASA Astrophysics Data System (ADS)

Sanchez-Mejia, Z. M.; Papuga, S. A.

2013-12-01

In semiarid regions, where water resources are limited and precipitation dynamics are changing, understanding land surface-atmosphere interactions that regulate the coupled soil moisture-precipitation system is key for resource management and planning. We present a modeling approach to study soil moisture and albedo controls on planetary boundary layer height (PBLh). We used data from the Santa Rita Creosote Ameriflux site and Tucson Airport atmospheric sounding to generate empirical relationships between soil moisture, albedo and PBLh. We developed empirical relationships and show that at least 50% of the variation in PBLh can be explained by soil moisture and albedo. Then, we used a stochastically driven two-layer bucket model of soil moisture dynamics and our empirical relationships to model PBLh. We explored soil moisture dynamics under three different mean annual precipitation regimes: current, increase, and decrease, to evaluate at the influence on soil moisture on land surface-atmospheric processes. While our precipitation regimes are simple, they represent future precipitation regimes that can influence the two soil layers in our conceptual framework. For instance, an increase in annual precipitation, could impact on deep soil moisture and atmospheric processes if precipitation events remain intense. We observed that the response of soil moisture, albedo, and the PBLh will depend not only on changes in annual precipitation, but also on the frequency and intensity of this change. We argue that because albedo and soil moisture data are readily available at multiple temporal and spatial scales, developing empirical relationships that can be used in land surface - atmosphere applications are of great value.

Simulation of nitrous oxide emissions at field scale using the SPACSYS model

PubMed Central

Wu, L.; Rees, R.M.; Tarsitano, D.; Zhang, Xubo; Jones, S.K.; Whitmore, A.P.

2015-01-01

Nitrous oxide emitted to the atmosphere via the soil processes of nitrification and denitrification plays an important role in the greenhouse gas balance of the atmosphere and is involved in the destruction of stratospheric ozone. These processes are controlled by biological, physical and chemical factors such as growth and activity of microbes, nitrogen availability, soil temperature and water availability. A comprehensive understanding of these processes embodied in an appropriate model can help develop agricultural mitigation strategies to reduce greenhouse gas emissions, and help with estimating emissions at landscape and regional scales. A detailed module to describe the denitrification and nitrification processes and nitrogenous gas emissions was incorporated into the SPACSYS model to replace an earlier module that used a simplified first-order equation to estimate denitrification and was unable to distinguish the emissions of individual nitrogenous gases. A dataset derived from a Scottish grassland experiment in silage production was used to validate soil moisture in the top 10 cm soil, cut biomass, nitrogen offtake and N2O emissions. The comparison between the simulated and observed data suggested that the new module can provide a good representation of these processes and improve prediction of N2O emissions. The model provides an opportunity to estimate gaseous N emissions under a wide range of management scenarios in agriculture, and synthesises our understanding of the interaction and regulation of the processes. PMID:26026411

Microbial regulation of terrestrial nitrous oxide formation: understanding the biological pathways for prediction of emission rates.

PubMed

Hu, Hang-Wei; Chen, Deli; He, Ji-Zheng

2015-09-01

The continuous increase of the greenhouse gas nitrous oxide (N2O) in the atmosphere due to increasing anthropogenic nitrogen input in agriculture has become a global concern. In recent years, identification of the microbial assemblages responsible for soil N2O production has substantially advanced with the development of molecular technologies and the discoveries of novel functional guilds and new types of metabolism. However, few practical tools are available to effectively reduce in situ soil N2O flux. Combating the negative impacts of increasing N2O fluxes poses considerable challenges and will be ineffective without successfully incorporating microbially regulated N2O processes into ecosystem modeling and mitigation strategies. Here, we synthesize the latest knowledge of (i) the key microbial pathways regulating N2O production and consumption processes in terrestrial ecosystems and the critical environmental factors influencing their occurrence, and (ii) the relative contributions of major biological pathways to soil N2O emissions by analyzing available natural isotopic signatures of N2O and by using stable isotope enrichment and inhibition techniques. We argue that it is urgently necessary to incorporate microbial traits into biogeochemical ecosystem modeling in order to increase the estimation reliability of N2O emissions. We further propose a molecular methodology oriented framework from gene to ecosystem scales for more robust prediction and mitigation of future N2O emissions. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Cadmium transfer and detoxification mechanisms in a soil-mulberry-silkworm system: phytoremediation potential.

PubMed

Zhou, Lingyun; Zhao, Ye; Wang, Shuifeng

2015-11-01

Phytoremediation has been proven to be an environmentally sound alternative for the recovery of contaminated soils, and the economic profit that comes along with the process might stimulate its field use. This study investigated cadmium (Cd) transfer and detoxification mechanisms in a soil-mulberry-silkworm system to estimate the suitability of the mulberry and silkworm as an alternative method for the remediation of Cd-polluted soil; it also explored the underlying mechanisms regulating the trophic transfer of Cd. The results show that both the mulberry and silkworm have high Cd tolerance. The transfer factor suggests that the mulberry has high potential for Cd extraction from polluted soil. The subcellular distribution and chemical forms of Cd in mulberry leaves show that cell wall deposition and vacuolar compartmentalization play important role in Cd tolerance. In the presence of increasing Cd concentrations in silkworm food, detoxification mechanisms (excretion and homeostasis) were activated so that excess Cd was excreted in fecal balls, and metallothionein levels in the mid-gut, the posterior of the silk gland, and the fat body of silkworms were enhanced. And, the Cd concentrations in silk are at a low level, ranging from 0.02 to 0.21 mg kg(-1). Therefore, these mechanisms of detoxification can regulate Cd trophic transfer, and mulberry planting and silkworm breeding has high phytoremediation potential for Cd-contaminated soil.

Soil Minerals: AN Overlooked Mediator of Plant-Microbe Competition for Organic Nitrogen in the Rhizosphere

NASA Astrophysics Data System (ADS)

Grandy, S.; Jilling, A.; Keiluweit, M.

2016-12-01

Recent research on the rate limiting steps in soil nitrogen (N) availability have shifted in focus from mineralization to soil organic matter (SOM) depolymerization. To that end, Schimel and Bennett (2004) argued that together with enzymatic breakdown of polymers to monomers, microsite processes and plant-microbial competition collectively drive N cycling. Here we present new conceptual models arguing that while depolymerization is a critical first step, mineral-organic associations may ultimately regulate the provisioning of bioavailable organic N, especially in the rhizosphere. Mineral-associated organic matter (MAOM) is a rich reservoir for N in soils and often holds 5-7x more N than particulate or labile fractions. However, MAOM is considered largely unavailable to plants as a source of N due to the physicochemical forces on mineral surfaces that stabilize organic matter. We argue that in rhizosphere hotspots, MAOM is in fact a potentially mineralizable and important source of nitrogen for plants. Several biochemical strategies enable plants and microbes to compete with mineral-organic interactions and effectively access MAOM. In particular, root-deposited low molecular weight compounds in the form of root exudates facilitate the biotic and abiotic destabilization and subsequent bioavailability of MAOM. We believe that the competitive balance between the potential fates of assimilable organic N — bound to mineral surfaces or dissolved and available for assimilation — depends on the specific interaction between and properties of the clay, soil solution, mineral-bound organic matter, and microbial community. For this reason, the plant-soil-MAOM interplay is enhanced in rhizosphere hotspots relative to non-rhizosphere environments, and likely strongly regulates plant-microbe competition for N. If these hypotheses are true, we need to reconsider potential soil N cycle responses to changes in climate and land use intensity, focusing on the processes by which management and other anthropogenic stressors can alter MAOM's N-supplying capacity.

Do Vertical Gradients in Soil Environmental Conditions Regulate Exudation Rates from Peatland Vegetation?

NASA Astrophysics Data System (ADS)

Proctor, C.; He, Y.

2017-12-01

Deposition of carbon belowground via the root exudation pathway is the net of root-borne efflux and influx processes. For select exudates, root have a remarkable ability to actively recapture lost compounds, suggesting that influx mechanisms regulate exudation. However, roots are not the sole sink for root effluxed carbon. Roots compete with solute sorption and microbial uptake, whom are regulated by a unique set of soil environmental conditions. Peatland soil features stark vertical gradients in their physical, chemical, biological, and hydrological properties, which has downstream implications for the relative competitive ability of each actor in root-soil-microbial interactions. This study developed a single root exudate model using the Barber-Cushman approach to examine the radial accumulation of exudates in simulated peatland soil with vertical gradients. The model simulated efflux, influx, solute diffusion, solute mineralization and solid phase sorption mechanisms as depth dependent on bulk density, porosity, tortuosity, buffer power, temperature, and microbial biomass. Deeper peat soil reduced the porosity that permits solute transport, increased tortuosity which lowered the effective diffusion rate, increased solute-solid sorption, and reduced microbial mineralization of effluxed compounds. Slower mineralization rates were partially juxtaposed by increases in sorption, albeit the net removal of effluxed compounds was lower, leading to a larger amount of exudates to remain in the rhizosphere around deeper roots. Increase in the solid phase, and its subsequent constriction of solute migration, lead to a higher accumulation of effluxed compounds on the rhizoplane, up to 1.23x higher than shallow soil. Subsequently, influx mechanisms captured a larger fraction of effluxed compounds (69.06% at -10cm versus 84.8% at -80 cm), reducing net exudation rates from 0.641 to 0.315 nmol cm-1 hr-1 between -10 and -80cm depths. These results suggest that localized environmental conditions around roots can be a considerable influence on root influx and competition for root exudates. The insights provided by this model help provide a better understanding of exudate regulation in peatlands and the quantity and quality of carbon deposited to the methanogen community.

Survival of Listeria monocytogenes in Soil Requires AgrA-Mediated Regulation

PubMed Central

Vivant, Anne-Laure; Garmyn, Dominique; Gal, Laurent; Hartmann, Alain

2015-01-01

In a recent paper, we demonstrated that inactivation of the Agr system affects the patterns of survival of Listeria monocytogenes (A.-L. Vivant, D. Garmyn, L. Gal, and P. Piveteau, Front Cell Infect Microbiol 4:160, http://dx.doi.org/10.3389/fcimb.2014.00160). In this study, we investigated whether the Agr-mediated response is triggered during adaptation in soil, and we compared survival patterns in a set of 10 soils. The fate of the parental strain L. monocytogenes L9 (a rifampin-resistant mutant of L. monocytogenes EGD-e) and that of a ΔagrA deletion mutant were compared in a collection of 10 soil microcosms. The ΔagrA mutant displayed significantly reduced survival in these biotic soil microcosms, and differential transcriptome analyses showed large alterations of the transcriptome when AgrA was not functional, while the variations in the transcriptomes between the wild type and the ΔagrA deletion mutant were modest under abiotic conditions. Indeed, in biotic soil environments, 578 protein-coding genes and an extensive repertoire of noncoding RNAs (ncRNAs) were differentially transcribed. The transcription of genes coding for proteins involved in cell envelope and cellular processes, including the phosphotransferase system and ABC transporters, and proteins involved in resistance to antimicrobial peptides was affected. Under sterilized soil conditions, the differences were limited to 86 genes and 29 ncRNAs. These results suggest that the response regulator AgrA of the Agr communication system plays important roles during the saprophytic life of L. monocytogenes in soil. PMID:26002901

Survival of Listeria monocytogenes in Soil Requires AgrA-Mediated Regulation.

PubMed

Vivant, Anne-Laure; Garmyn, Dominique; Gal, Laurent; Hartmann, Alain; Piveteau, Pascal

2015-08-01

In a recent paper, we demonstrated that inactivation of the Agr system affects the patterns of survival of Listeria monocytogenes (A.-L. Vivant, D. Garmyn, L. Gal, and P. Piveteau, Front Cell Infect Microbiol 4:160, http://dx.doi.org/10.3389/fcimb.2014.00160). In this study, we investigated whether the Agr-mediated response is triggered during adaptation in soil, and we compared survival patterns in a set of 10 soils. The fate of the parental strain L. monocytogenes L9 (a rifampin-resistant mutant of L. monocytogenes EGD-e) and that of a ΔagrA deletion mutant were compared in a collection of 10 soil microcosms. The ΔagrA mutant displayed significantly reduced survival in these biotic soil microcosms, and differential transcriptome analyses showed large alterations of the transcriptome when AgrA was not functional, while the variations in the transcriptomes between the wild type and the ΔagrA deletion mutant were modest under abiotic conditions. Indeed, in biotic soil environments, 578 protein-coding genes and an extensive repertoire of noncoding RNAs (ncRNAs) were differentially transcribed. The transcription of genes coding for proteins involved in cell envelope and cellular processes, including the phosphotransferase system and ABC transporters, and proteins involved in resistance to antimicrobial peptides was affected. Under sterilized soil conditions, the differences were limited to 86 genes and 29 ncRNAs. These results suggest that the response regulator AgrA of the Agr communication system plays important roles during the saprophytic life of L. monocytogenes in soil. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Denitrification in Agricultural Soils: Integrated control and Modelling at various scales (DASIM)

NASA Astrophysics Data System (ADS)

Müller, Christoph; Well, Reinhard; Böttcher, Jürgen; Butterbach-Bahl, Klaus; Dannenmann, Michael; Deppe, Marianna; Dittert, Klaus; Dörsch, Peter; Horn, Marcus; Ippisch, Olaf; Mikutta, Robert; Senbayram, Mehmet; Vogel, Hans-Jörg; Wrage-Mönnig, Nicole; Müller, Carsten

2016-04-01

The new research unit DASIM brings together the expertise of 11 working groups to study the process of denitrification at unprecedented spatial and temporal resolution. Based on state-of-the art analytical techniques our aim is to develop improved denitrification models ranging from the microscale to the field/plot scale. Denitrification, the process of nitrate reduction allowing microbes to sustain respiration under anaerobic conditions, is the key process returning reactive nitrogen as N2to the atmosphere. Actively denitrifying communities in soil show distinct regulatory phenotypes (DRP) with characteristic controls on the single reaction steps and end-products. It is unresolved whether DRPs are anchored in the taxonomic composition of denitrifier communities and how environmental conditions shape them. Despite being intensively studied for more than 100 years, denitrification rates and emissions of its gaseous products can still not be satisfactorily predicted. While the impact of single environmental parameters is well understood, the complexity of the process itself with its intricate cellular regulation in response to highly variable factors in the soil matrix prevents robust prediction of gaseous emissions. Key parameters in soil are pO2, organic matter content and quality, pH and the microbial community structure, which in turn are affected by the soil structure, chemistry and soil-plant interactions. In the DASIM research unit, we aim at the quantitative prediction of denitrification rates as a function of microscale soil structure, organic matter quality, DRPs and atmospheric boundary conditions via a combination of state-of-the-art experimental and analytical tools (X-ray μCT, 15N tracing, NanoSIMS, microsensors, advanced flux detection, NMR spectroscopy, and molecular methods including next generation sequencing of functional gene transcripts). We actively seek collaboration with researchers working in the field of denitrification.

Soil Management Plan for the Oak Ridge Y-12 National Security Complex Oak Ridge, Tennessee

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

2005-03-02

This Soil Management Plan applies to all activities conducted under the auspices of the National Nuclear Security Administration (NNSA) Oak Ridge Y-12 National Security Complex (Y-12) that involve soil disturbance and potential management of waste soil. The plan was prepared under the direction of the Y-12 Environmental Compliance Department of the Environment, Safety, and Health Division. Soil disturbances related to maintenance activities, utility and building construction projects, or demolition projects fall within the purview of the plan. This Soil Management Plan represents an integrated, visually oriented, planning and information resource tool for decision making involving excavation or disturbance of soilmore » at Y-12. This Soil Management Plan addresses three primary elements. (1) Regulatory and programmatic requirements for management of soil based on the location of a soil disturbance project and/or the regulatory classification of any contaminants that may be present (Chap. 2). Five general regulatory or programmatic classifications of soil are recognized to be potentially present at Y-12; soil may fall under one or more these classifications: (a) Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) pursuant to the Oak Ridge Reservation (ORR) Federal Facilities Agreement; (b) Resource Conservation and Recovery Act (RCRA); (c) RCRA 3004(u) solid waste managements units pursuant to the RCRA Hazardous and Solid Waste Amendments Act of 1984 permit for the ORR; (d) Toxic Substances and Control Act-regulated soil containing polychlorinated biphenyls; and (e) Radiologically contaminated soil regulated under the Atomic Energy Act review process. (2) Information for project planners on current and future planned remedial actions (RAs), as prescribed by CERCLA decision documents (including the scope of the actions and remedial goals), land use controls implemented to support or maintain RAs, RCRA post-closure regulatory requirements for former waste management units, legacy contamination source areas and distribution of contamination in soils, and environmental infrastructure (e.g., caps, monitoring systems, etc.) that is in place or planned in association with RAs. (3) Regulatory considerations and processes for management and disposition of waste soil upon generation, including regulatory drivers, best management practices (BMPs), waste determination protocols, waste acceptance criteria, and existing waste management procedures and BMPs for Y-12. This Soil Management Plan provides information to project planners to better coordinate their activities with other organizations and programs with a vested interest in soil disturbance activities at Y-12. The information allows project managers and maintenance personnel to evaluate and anticipate potential contaminant levels that may be present at a proposed soil disturbance site prior to commencement of activities and allows a more accurate assessment of potential waste management requirements.« less

Regulation of Microbial Herbicide Transformation by Coupled Moisture and Oxygen Dynamics in Soil

NASA Astrophysics Data System (ADS)

Marschmann, G.; Pagel, H.; Uksa, M.; Streck, T.; Milojevic, T.; Rezanezhad, F.; Van Cappellen, P.

2017-12-01

The key processes of herbicide fate in agricultural soils are well-characterized. However, most of these studies are from batch experiments that were conducted under optimal aerobic conditions. In order to delineate the processes controlling herbicide (i.e., phenoxy herbicide 2-methyl-4-chlorophenoxyacetic acid, MCPA) turnover in soil under variable moisture conditions, we conducted a state-of-the-art soil column experiment, with a highly instrumented automated soil column system, under constant and oscillating water table regimes. In this system, the position of the water table was imposed using a computer-controlled, multi-channel pump connected to a hydrostatic equilibrium reservoir and a water storage reservoir. The soil samples were collected from a fertilized, arable and carbon-limited agricultural field site in Germany. The efflux of CO2 was determined from headspace gas measurements as an integrated signal of microbial respiration activity. Moisture and oxygen profiles along the soil column were monitored continuously using high-resolution moisture content probes and luminescence-based Multi Fiber Optode (MuFO) microsensors, respectively. Pore water and solid-phase samples were collected periodically at 8 depths and analyzed for MCPA, dissolved inorganic and organic carbon concentrations as well as the abundance of specific MCPA-degrading bacteria. The results indicated a clear effect of the water table fluctuations on CO2 fluxes, with lower fluxes during imbibition periods and enhanced CO2 fluxes after drainage. In this presentation, we focus on the results of temporal changes in the vertical distribution of herbicide, specific herbicide degraders, organic carbon concentration, moisture content and oxygen. We expect that the high spatial and temporal resolution of measurements from this experiment will allow robust calibration of a reactive transport model for the soil columns, with subsequent identification and quantification of rate limiting processes of MCPA turnover. This will ultimately improve our overall understanding of herbicide fate processes as a function of soil water regime.

Aridity and plant uptake interact to make dryland soils hotspots for nitric oxide (NO) emissions

PubMed Central

Blankinship, Joseph C.; Marchus, Kenneth; Lucero, Delores M.; Sickman, James O.; Schimel, Joshua P.

2016-01-01

Nitric oxide (NO) is an important trace gas and regulator of atmospheric photochemistry. Theory suggests moist soils optimize NO emissions, whereas wet or dry soils constrain them. In drylands, however, NO emissions can be greatest in dry soils and when dry soils are rewet. To understand how aridity and vegetation interact to generate this pattern, we measured NO fluxes in a California grassland, where we manipulated vegetation cover and the length of the dry season and measured [δ15-N]NO and [δ18-O]NO following rewetting with 15N-labeled substrates. Plant N uptake reduced NO emissions by limiting N availability. In the absence of plants, soil N pools increased and NO emissions more than doubled. In dry soils, NO-producing substrates concentrated in hydrologically disconnected microsites. Upon rewetting, these concentrated N pools underwent rapid abiotic reaction, producing large NO pulses. Biological processes did not substantially contribute to the initial NO pulse but governed NO emissions within 24 h postwetting. Plants acted as an N sink, limiting NO emissions under optimal soil moisture. When soils were dry, however, the shutdown in plant N uptake, along with the activation of chemical mechanisms and the resuscitation of soil microbial processes upon rewetting, governed N loss. Aridity and vegetation interact to maintain a leaky N cycle during periods when plant N uptake is low, and hydrologically disconnected soils favor both microbial and abiotic NO-producing mechanisms. Under increasing rates of atmospheric N deposition and intensifying droughts, NO gas evasion may become an increasingly important pathway for ecosystem N loss in drylands. PMID:27114523

Synchrotron-based Infrared-microspectroscopy reveals the impact of land management on carbon storage in soil micro-aggregates

NASA Astrophysics Data System (ADS)

Hernandez-Soriano, Maria C.; Dalal, Ram C.; Menzies, Neal W.; Kopittke, Peter M.

2015-04-01

Carbon stabilization in soil microaggregates results from chemical and biological processes that are highly sensitive to changes in land use. Indeed, such processes govern soil capability to store carbon, this being essential for soil health and productivity and to regulate emissions of soil organic carbon (SOC) as CO2. The identification of carbon functionalities using traditional mid-infrared analysis can be linked to carbon metabolism in soil but differences associated to land use are generally limited. The spatial resolution of synchrotron-based Infrared-microspectroscopy allows mapping microaggregate-associated forms of SOC because it has 1000 times higher brightness than a conventional thermal globar source. These maps can contribute to better understand molecular organization of SOC, physical protection in the soil particles and co-localization of carbon sources with microbial processes. Spatially-resolved analyses of carbon distribution in micro-aggregates (<200 μm diameter) have been conducted using FTIR microspectroscopy (Infrared Microspectroscopy beamline, Australian Synchrotron). Two soil types (Ferralsol and Vertisol, World Reference Base 2014) were collected from undisturbed areas and from a location(s) immediately adjacent which has a long history of agricultural use (>20 years). Soils were gently screened (250 μm) to obtain intact microaggregates which were humidified and frozen at -20°C, and sectioned (200 μm thickness) using a diamond knife and a cryo-ultramicrotome. The sections were placed between CaF2 windows and the spectra were acquired in transmission mode. The maps obtained (5 µm step-size over ca. 150 × 150 µm) revealed carbon distribution in microaggregates from soils under contrasting land management, namely undisturbed and cropping land. Accumulation of aromatic and carboxylic functions on specific spots and marginal co-localization with clays was observed, which suggests processes other than organo-mineral associations being responsible for carbon stabilization. A substantial decrease in carboxylic compounds was observed for agricultural soils. Clays were mostly co-localized with alkenes and polysaccharides, particularly in agricultural soils, likely due to enhanced microbial activity in those spots. Results will be linked to currently ongoing analysis of soil enzymes activities and characterization of dissolved organic carbon components. This novel methodological approach combines biological and chemical information on organic carbon dynamics in soil at a molecular level and will constitute a substantial advance towards understanding carbon storage in soil and the long term impact of land management.

The effects of exogenous plant growth regulators in the phytoextraction of heavy metals.

PubMed

Tassi, Eliana; Pouget, Joël; Petruzzelli, Gianniantonio; Barbafieri, Meri

2008-03-01

The term "assisted phytoextraction" usually refers to the process of applying a chemical additive to contaminated soil in order to increase the metal uptake by crop plants. In this study three commercially available plant growth regulators (PGRs) based on cytokinins (CKs) were used to boost the assisted phytoextraction of Pb and Zn in contaminated soil collected from a former manufactured gas-plant site. The effects of EDTA treatment in soil and PGR treatment in leaves of Helianthus annuus were investigated in terms of dry weight biomass, Pb and Zn accumulation in the upper parts of the plants, Pb and Zn phytoextraction efficiency and transpiration rate. Metal solubility in soil and its subsequent accumulation in shoots were markedly enhanced by EDTA. The combined effects of EDTA and cytokine resulted in an increase in the Pb and Zn phytoextraction efficiency (up to 890% and 330%, respectively, compared to untreated plants) and up to a 50% increase in foliar transpiration. Our results indicate that exogenous PGRs based on CKs can positively assist the phytoextraction increasing the biomass production, the metal accumulation in shoots and the plant transpiration. The observed increase in biomass could be related to its action in stimulation of cell division and shoot initiation. On the other hand, the increase in metal accumulation in upper parts of plant could be related to both the role of PGRs in the enhancement of plant resistance to stress (as toxic metals) and the increase in transpiration rate, i.e. flux of water-soluble soil components and contaminants by the regulation of stomatal opening.

Community structure and succession regulation of fungal consortia in the lignocellulose-degrading process on natural biomass.

PubMed

Tian, Baoyu; Wang, Chunxiang; Lv, Ruirui; Zhou, Junxiong; Li, Xin; Zheng, Yi; Jin, Xiangyu; Wang, Mengli; Ye, Yongxia; Huang, Xinyi; Liu, Ping

2014-01-01

The study aims to investigate fungal community structures and dynamic changes in forest soil lignocellulose-degrading process. rRNA gene clone libraries for the samples collected in different stages of lignocellulose degradation process were constructed and analyzed. A total of 26 representative RFLP types were obtained from original soil clone library, including Mucoromycotina (29.5%), unclassified Zygomycetes (33.5%), Ascomycota (32.4%), and Basidiomycota (4.6%). When soil accumulated with natural lignocellulose, 16 RFLP types were identified from 8-day clone library, including Basidiomycota (62.5%), Ascomycota (36.1%), and Fungi incertae sedis (1.4%). After enrichment for 15 days, identified 11 RFLP types were placed in 3 fungal groups: Basidiomycota (86.9%), Ascomycota (11.5%), and Fungi incertae sedis (1.6%). The results showed richer, more diversity and abundance fungal groups in original forest soil. With the degradation of lignocellulose, fungal groups Mucoromycotina and Ascomycota decreased gradually, and wood-rotting fungi Basidiomycota increased and replaced the opportunist fungi to become predominant group. Most of the fungal clones identified in sample were related to the reported lignocellulose-decomposing strains. Understanding of the microbial community structure and dynamic change during natural lignocellulose-degrading process will provide us with an idea and a basis to construct available commercial lignocellulosic enzymes or microbial complex.

Land use and surface process domains on alpine hillslopes

NASA Astrophysics Data System (ADS)

Kuhn, Nikolaus J.; Caviezel, Chatrina; Hunziker, Matthias

2015-04-01

Shrubs and trees are generally considered to protect hillslopes from erosion. As a consequence, shrub encroachment on mountain pastures after abandoning grazing is not considered a threat to soils. However, the abandonment of mown or grazed grasslands causes a shift in vegetation composition and thus a change in landscape ecology and geomorphology. On many alpine slopes, current changes in land use and vegetation cover are accompanied by climate change, potentially generating a new geomorphic regime. Most of the debate focuses on the effect of land abandonment on water erosion rates. Generally, an established perennial vegetation cover improves the mechanical anchoring of the soil and the regulation of the soil water budget, including runoff generation and erosion. However, changing vegetation composition affects many other above- and below-ground properties like root density, -diversity and -geometry, soil structure, pore volume and acidity. Each combination of these properties can lead to a distinct scenario of dominating surface processes, often not reflected by common erosion risk assessment procedures. The study of soil properties along a chronosequence of green alder (alnusviridis) encroachment on the Unteralptal in central Switzerland reveals that shrub encroachment changes soil and vegetation properties towards an increase of resistance to run-off related erosion processes, but a decrease of slope stability against shallow landslides. The latter are a particular threat because of the currently increasing frequency of slide-triggering high magnitude rainfalls. The potential change of process domain on alpine pastures highlights the need for a careful use of erosion models when assessing future land use and climate scenarios. In mountains, but also other intensively managed agricultural landscapes, risk assessment without the appropriate reflection on the shifting relevance of surface processes carries the risk of missing future threats to environmental quality, services and hazards.

Method for Implementing Subsurface Solid Derived Concentration Guideline Levels (DCGL) - 12331

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lively, J.W.

2012-07-01

The U.S. Nuclear Regulatory Commission (NRC) and other federal agencies currently approve the Multi-Agency Radiation Site Survey and Investigation Manual (MARSSIM) as guidance for licensees who are conducting final radiological status surveys in support of decommissioning. MARSSIM provides a method to demonstrate compliance with the applicable regulation by comparing residual radioactivity in surface soils with derived concentration guideline levels (DCGLs), but specifically discounts its applicability to subsurface soils. Many sites and facilities undergoing decommissioning contain subsurface soils that are potentially impacted by radiological constituents. In the absence of specific guidance designed to address the derivation of subsurface soil DCGLs andmore » compliance demonstration, decommissioning facilities have attempted to apply DCGLs and final status survey techniques designed specifically for surface soils to subsurface soils. The decision to apply surface soil limits and surface soil compliance metrics to subsurface soils typically results in significant over-excavation with associated cost escalation. MACTEC, Inc. has developed the overarching concepts and principles found in recent NRC decommissioning guidance in NUREG 1757 to establish a functional method to derive dose-based subsurface soil DCGLs. The subsurface soil method developed by MACTEC also establishes a rigorous set of criterion-based data evaluation metrics (with analogs to the MARSSIM methodology) that can be used to demonstrate compliance with the developed subsurface soil DCGLs. The method establishes a continuum of volume factors that relate the size and depth of a volume of subsurface soil having elevated concentrations of residual radioactivity with its ability to produce dose. The method integrates the subsurface soil sampling regime with the derivation of the subsurface soil DCGL such that a self-regulating optimization is naturally sought by both the responsible party and regulator. This paper describes the concepts and basis used by MACTEC to develop the dose-based subsurface soil DCGL method. The paper will show how MACTEC's method can be used to demonstrate that higher concentrations of residual radioactivity in subsurface soils (as compared with surface soils) can meet the NRC's dose-based regulations. MACTEC's method has been used successfully to obtain the NRC's radiological release at a site with known radiological impacts to subsurface soils exceeding the surface soil DCGL, saving both time and cost. Having considered the current NRC guidance for consideration of residual radioactivity in subsurface soils during decommissioning, MACTEC has developed a technically based approach to the derivation of and demonstration of compliance with subsurface soil DCGLs for radionuclides. In fact, the process uses the already accepted concepts and metrics approved for surface soils as the foundation for deriving scaling factors used to calculate subsurface soil DCGLs that are at least equally protective of the decommissioning annual dose standard. Each of the elements identified for consideration in the current NRC guidance is addressed in this proposed method. Additionally, there is considerable conservatism built into the assumptions and techniques used to arrive at subsurface soil scaling factors and DCGLs. The degree of conservatism embodied in the approach used is such that risk managers and decision makers approving and using subsurface soil DCGLs derived in accordance with this method can be confident that the future exposures will be well below permissible and safe levels. The technical basis for the method can be applied to a broad variety of sites with residual radioactivity in subsurface soils. Given the costly nature of soil surveys, excavation, and disposal of soils as low-level radioactive waste, MACTEC's method for deriving and demonstrating compliance with subsurface soil DCGLs offers the possibility of significant cost savings over the traditional approach of applying surface soil DCGLs to subsurface soils. Furthermore, while yet untested, MACTEC believes that the concepts and methods embodied in this approach could readily be applied to other types of contamination found in subsurface soils. (author)« less

Structured heterogeneity in a marine terrace chronosequence: Upland mottling

USGS Publications Warehouse

Schulz, Marjorie S.; Stonestrom, David A.; Lawrence, Corey R.; Bullen, Thomas D.; Fitzpatrick, John; Kyker-Snowman, Emily; Manning, Jane; Mnich, Meagan

2016-01-01

Soil mottles generally are interpreted as a product of reducing conditions during periods of water saturation. The upland soils of the Santa Cruz, CA, marine terrace chronosequence display an evolving sequence of reticulate mottling from the youngest soil (65 ka) without mottles to the oldest soil (225 ka) with well-developed mottles. The mottles consist of an interconnected network of clay and C-enriched regions (gray, 2.5Y 6/1) bordered by leached parent material (white, 2.5Y 8/1) within a diminishing matrix of oxidized parent material (orange, 7.5YR 5/8). The mottles develop in soils that formed from relatively uniform nearshore sediments and occur below the depth of soil bioturbation. To explore how a presumably wetland feature occurs in an unsaturated upland soil, physical and chemical characteristics of mottle separates (orange, gray, and white) were compared through the deep time represented by the soil chronosequence. Mineralogical, isotopic, and surface-area differences among mottle separates indicate that rhizogenic centimeter-scale mass transfer acting across millennia is an integral part of weathering, pedogenesis, and C and nutrient transfer. Elemental analysis, electron microscopy, and Fe-isotope systematics indicate that mottle development is driven by deep roots together with their fungal and microbial symbionts. Taken together, these data suggest that deep soil horizons on old stable landforms can develop reticulate mottling as the long-term imprint of rhizospheric processes. The processes of rhizogenic mottle formation appear to regulate pedogenesis, nutrients, and C sequestration at depth in unsaturated zones.

Hydrogeology and chemical quality of water and soil at Carroll Island, Aberdeen Proving Ground, Maryland

USGS Publications Warehouse

Tenbus, F.J.; Phillips, S.W.

1996-01-01

Carroll Island was used for open-air testing of chemical warfare agents from the late 1940's until 1971. Testing and disposal activities weresuspected of causing environmental contamination at 16 sites on the island. The hydrogeology and chemical quality of ground water, surface water, and soil at these sites were investigated with borehole logs, environmental samples, water-level measurements, and hydrologic tests. A surficial aquifer, upper confining unit, and upper confined aquifer were defined. Ground water in the surficial aquifer generally flows from the east-central part of the island toward the surface-water bodies, butgradient reversals caused by evapotranspiration can occur during dry seasons. In the confined aquifer, hydraulic gradients are low, and hydraulic head is affected by tidal loading and by seasonal pumpage from the west. Inorganic chemistry in the aquifers is affected by brackish-water intrusion from gradient reversals and by dissolution ofcarboniferous shell material in the confining unit.The concentrations of most inorganic constituents probably resulted from natural processes, but some concentrations exceeded Federal water-quality regulations and criteria. Organic compounds were detected in water and soil samples at maximum concentrations of 138 micrograms per liter (thiodiglycol in surface water) and 12 micrograms per gram (octadecanoic acid in soil).Concentrations of organic compounds in ground water exceeded Federal drinking-water regulations at two sites. The organic compounds that weredetected in environmental samples were variously attributed to natural processes, laboratory or field- sampling contamination, fallout from industrial air pollution, and historical military activities.

Contrasting effects of photochemical and microbial degradation on Cu(II) binding with fluorescent DOM from different origins.

PubMed

Xu, Huacheng; Guan, Dong-Xing; Zou, Li; Lin, Hui; Guo, Laodong

2018-08-01

Effects of photochemical and microbial degradation on variations in composition and molecular-size of dissolved organic matter (DOM) from different sources (algal and soil) and the subsequent influence on Cu(II) binding were investigated using UV-Vis, fluorescence excitation-emission matrices coupled with parallel factor analysis, flow field-flow fractionation (FlFFF), and metal titration. The degradation processes resulted in an initial rapid decline in the bulk dissolved organic carbon and chromophoric and fluorescent DOM components, followed by a small or little decrease. Specifically, photochemical reaction decreased the aromaticity, humification and apparent molecular weights of all DOM samples, whereas a reverse trend was observed during microbial degradation. The FlFFF fractograms revealed that coagulation of both protein- and humic-like DOM induced an increase in molecular weights for algal-DOM, while the molecular weight enhancement for allochthonous soil samples was mainly attributed to the self-assembly of humic-like components. The Cu(II) binding capacity of algal-derived humic-like and fulvic-like DOM consistently increased during photo- and bio-degradation, while the soil-derived DOM exhibited a slight decline in Cu(II) binding capacity during photo-degradation but a substantial increase during microbial degradation, indicating source- and degradation-dependent metal binding heterogeneities. Pearson correlation analysis demonstrated that the Cu(II) binding potential was mostly related with aromaticity and molecular size for allochthonous soil-derived DOM, but was regulated by both DOM properties and specific degradation processes for autochthonous algal-derived DOM. This study highlighted the coupling role of inherent DOM properties and external environmental processes in regulating metal binding, and provided new insights into metal-DOM interactions and the behavior and fate of DOM-bound metals in aquatic environments. Copyright © 2018 Elsevier Ltd. All rights reserved.

[Characteristics of soil water infiltration in sub-alpine dark coniferous ecosystem of upper reaches of Yangtze River].

PubMed

Yu, Xinxiao; Zhao, Yutao; Zhang, Zhiqiang; Cheng, Genwei

2003-01-01

Dark coniferous forest is the predominant type of vegetation in the upper reaches of Yangtze River. Difference among different types of soil exists. The sand content of soil is higher and the soil texture is coarser in the early stage of forest succession. The sand content of soil decreases with the advancement of the forest succession while that of soil in Abies fabri over-mature forest is the lowest. In slope wash soil, the sand content of soil decreases with the increasing soil depth. The soil porosity and soil water-holding capacity increases and soil bulk density decreases with the advancement of forest succession and decrease of soil depth. The deeper soil depth or the smaller soil water content are, the smaller the unsaturated hydraulic conductivity of soil measured by CGA method. Moreover, the correlation of soil water content with unsaturated hydraulic conductivity of soil can be simulated by an exponential function. The saturated hydraulic conductivity of soil decreases exponentially with the increasing soil depth. The time to attain the stable infiltration rate is different among different soil depth, while the deeper the soil depth is, the longer the time needs. The variation in soil texture, soil physical properties and the high infiltration rate of soil there implicated that there are scarce surface runoff, but abundant in subsurface flow, return flow and seepage, which is the result of regulation by dark coniferous forest on hydrological processes.

Adaptive management for soil ecosystem services.

PubMed

Birgé, Hannah E; Bevans, Rebecca A; Allen, Craig R; Angeler, David G; Baer, Sara G; Wall, Diana H

2016-12-01

Ecosystem services provided by soil include regulation of the atmosphere and climate, primary (including agricultural) production, waste processing, decomposition, nutrient conservation, water purification, erosion control, medical resources, pest control, and disease mitigation. The simultaneous production of these multiple services arises from complex interactions among diverse aboveground and belowground communities across multiple scales. When a system is mismanaged, non-linear and persistent losses in ecosystem services can arise. Adaptive management is an approach to management designed to reduce uncertainty as management proceeds. By developing alternative hypotheses, testing these hypotheses and adjusting management in response to outcomes, managers can probe dynamic mechanistic relationships among aboveground and belowground soil system components. In doing so, soil ecosystem services can be preserved and critical ecological thresholds avoided. Here, we present an adaptive management framework designed to reduce uncertainty surrounding the soil system, even when soil ecosystem services production is not the explicit management objective, so that managers can reach their management goals without undermining soil multifunctionality or contributing to an irreversible loss of soil ecosystem services. Copyright © 2016. Published by Elsevier Ltd.

Identifying metabolites related to nitrogen mineralisation using 1H NMR spectroscopy

NASA Astrophysics Data System (ADS)

. T McDonald, Noeleen; Graham, Stewart; Watson, Catherine; Gordon, Alan; Lalor, Stan; Laughlin, Ronnie; Elliott, Chris; . P Wall, David

2015-04-01

Exploring new analysis techniques to enhance our knowledge of the various metabolites within our soil systems is imperative. Principally, this knowledge would allow us to link key metabolites with functional influences on critical nutrient processes, such as the nitrogen (N) mineralisation in soils. Currently there are few studies that utilize proton nuclear magnetic resonance spectroscopy (1H NMR) to characterize multiple metabolites within a soil sample. The aim of this research study was to examine the effectiveness of 1H NMR for isolating multiple metabolites that are related to the mineralizable N (MN) capacity across a range of 35 Irish grassland soils. Soils were measured for MN using the standard seven day anaerobic incubation (AI-7). Additionally, soils were also analysed for a range of physio-chemical properties [e.g. total N, total C, mineral N, texture and soil organic matter (SOM)]. Proton NMR analysis was carried on these soils by extracting with 40% methanol:water, lyophilizing and reconstituting in deuterium oxide and recording the NMR spectra on a 400MHz Bruker AVANCE III spectrometer. Once the NMR data were spectrally processed and analysed using multivariate statistical analysis, seven metabolites were identified as having significant relationships with MN (glucose, trimethylamine, glutamic acid, serine, aspartic acid, 4-aminohippuirc acid and citric acid). Following quantification, glucose was shown to explain the largest percentage variability in MN (72%). These outcomes suggest that sources of labile carbon are essential in regulating N mineralisation and the capacity of plant available N derived from SOM-N pools in these soils. Although, smaller in concentration, the amino acids; 4-aminohippuirc acid, glutamic acid and serine also significantly (P<0.05) explained 43%, 27% and 19% of the variability in MN, respectively. This novel study highlights the effectiveness of using 1H NMR as a practical approach to profile multiple metabolites in soils simultaneously, and increasing the potential to identify those related to various soil processes.

Processes regulating progressive nitrogen limitation under elevated carbon dioxide: A meta-analysis

DOE PAGES

Liang, Junyi; Qi, Xuan; Souza, Lara; ...

2016-05-10

Here, the nitrogen (N) cycle has the potential to regulate climate change through its influence on carbon (C) sequestration. Although extensive research has explored whether or not progressive N limitation (PNL) occurs under CO 2 enrichment, a comprehensive assessment of the processes that regulate PNL is still lacking. Here, we quantitatively synthesized the responses of all major processes and pools in the terrestrial N cycle with meta-analysis of CO 2 experimental data available in the literature. The results showed that CO 2 enrichment significantly increased N sequestration in the plant and litter pools but not in the soil pool, partiallymore » supporting one of the basic assumptions in the PNL hypothesis that elevated CO 2 results in more N sequestered in organic pools. However, CO 2 enrichment significantly increased the N influx via biological N fixation and the loss via N 2O emission, but decreased the N efflux via leaching. In addition, no general diminished CO 2 fertilization effect on plant growth was observed over time up to the longest experiment of 13 years. Overall, our analyses suggest that the extra N supply by the increased biological N fixation and decreased leaching may potentially alleviate PNL under elevated CO 2 conditions in spite of the increases in plant N sequestration and N 2O emission. Moreover, our syntheses indicate that CO 2 enrichment increases soil ammonium (NH 4 +) to nitrate (NO 3 –) ratio. The changed NH 4 +/NO 3 – ratio and subsequent biological processes may result in changes in soil microenvironments, above-belowground community structures and associated interactions, which could potentially affect the terrestrial biogeochemical cycles. In addition, our data synthesis suggests that more long-term studies, especially in regions other than temperate ones, are needed for comprehensive assessments of the PNL hypothesis.« less

Soil properties, soil functions and soil security

NASA Astrophysics Data System (ADS)

Poggio, Laura; Gimona, Alessandro

2017-04-01

Soil plays a crucial role in the ecosystem functioning such as food production, capture and storage of water, carbon and nutrients and in the realisation of a number of UN Sustainable Developments Goals. In this work we present an approach to spatially and jointly assess the multiple contributions of soil to the delivery of ecosystem services within multiple land-use system. We focussed on the modelling of the impact of soil on sediment retention, carbon storage, storing and filtering of nutrients, habitat for soil organisms and water regulation, taking into account examples of land use and climate scenarios. Simplified models were used for the single components. Spatialised Bayesian Belief networks were used for the jointly assessment and mapping of soil contribution to multiple land use and ecosystem services. We integrated continuous 3D soil information derived from digital soil mapping approaches covering the whole of mainland Scotland, excluding the Northern Islands. Uncertainty was accounted for and propagated across the whole process. The Scottish test case highlights the differences in roles between mineral and organic soils and provides an example of integrated study assessing the contributions of soil. The results show the importance of the multi-functional analysis of the contribution of soils to the ecosystem service delivery and UN SDGs.

Estimating hydrologic and erosion response for use in ecological site descriptions

USDA-ARS?s Scientific Manuscript database

Ecological resilience of rangeland landscapes is strongly related to eco-hydrologic pattern-process feedbacks that regulate the retention or loss of water and soil resources. However, key ecohydrologic information is often lacking in Ecological Site Descriptions (ESDs) used to guide management of ra...

Sensitivity of soil microbial processes to livestock antimicrobials

USDA-ARS?s Scientific Manuscript database

Strong public concern that the overuse of livestock antimicrobials produce greater antibiotic resistance and pose a risk for human health have led to new regulations on the use of antimicrobials. Manure runoff containing trace levels of antimicrobials is usually applied to crop fields, but their im...

Monitoring as a partially observable decision problem

Treesearch

Paul L. Fackler; Robert G. Haight

2014-01-01

Monitoring is an important and costly activity in resource man-agement problems such as containing invasive species, protectingendangered species, preventing soil erosion, and regulating con-tracts for environmental services. Recent studies have viewedoptimal monitoring as a Partially Observable Markov Decision Pro-cess (POMDP), which provides a framework for...

Improved grazing management may increase soil carbon sequestration in temperate steppe

NASA Astrophysics Data System (ADS)

Chen, Wenqing; Huang, Ding; Liu, Nan; Zhang, Yingjun; Badgery, Warwick B.; Wang, Xiaoya; Shen, Yue

2015-07-01

Different grazing strategies impact grassland plant production and may also regulate the soil carbon formation. For a site in semiarid temperate steppe, we studied the effect of combinations of rest, high and moderate grazing pressure over three stages of the growing season, on the process involved in soil carbon sequestration. Results show that constant moderate grazing (MMM) exhibited the highest root production and turnover accumulating the most soil carbon. While deferred grazing (RHM and RMH) sequestered less soil carbon compared to MMM, they showed higher standing root mass, maintained a more desirable pasture composition, and had better ability to retain soil N. Constant high grazing pressure (HHH) caused diminished above- and belowground plant production, more soil N losses and an unfavorable microbial environment and had reduced carbon input. Reducing grazing pressure in the last grazing stage (HHM) still had a negative impact on soil carbon. Regression analyses show that adjusting stocking rate to ~5SE/ha with ~40% vegetation utilization rate can get the most carbon accrual. Overall, the soil carbon sequestration in the temperate grassland is affected by the grazing regime that is applied, and grazing can be altered to improve soil carbon sequestration in the temperate steppe.

Improved grazing management may increase soil carbon sequestration in temperate steppe.

PubMed

Chen, Wenqing; Huang, Ding; Liu, Nan; Zhang, Yingjun; Badgery, Warwick B; Wang, Xiaoya; Shen, Yue

2015-07-03

Different grazing strategies impact grassland plant production and may also regulate the soil carbon formation. For a site in semiarid temperate steppe, we studied the effect of combinations of rest, high and moderate grazing pressure over three stages of the growing season, on the process involved in soil carbon sequestration. Results show that constant moderate grazing (MMM) exhibited the highest root production and turnover accumulating the most soil carbon. While deferred grazing (RHM and RMH) sequestered less soil carbon compared to MMM, they showed higher standing root mass, maintained a more desirable pasture composition, and had better ability to retain soil N. Constant high grazing pressure (HHH) caused diminished above- and belowground plant production, more soil N losses and an unfavorable microbial environment and had reduced carbon input. Reducing grazing pressure in the last grazing stage (HHM) still had a negative impact on soil carbon. Regression analyses show that adjusting stocking rate to ~5SE/ha with ~40% vegetation utilization rate can get the most carbon accrual. Overall, the soil carbon sequestration in the temperate grassland is affected by the grazing regime that is applied, and grazing can be altered to improve soil carbon sequestration in the temperate steppe.

Runoff Generation Mechanisms and Mean Transit Time in a High-Elevation Tropical Ecosystem

NASA Astrophysics Data System (ADS)

Mosquera, G.

2015-12-01

Understanding runoff generation processes in tropical mountainous regions remains poorly understood, particularly in ecosystems above the tree line. Here, we provide insights on the process dominating the ecohydrology of the tropical alpine biome (i.e., páramo) of the Zhurucay River Ecohydrological Observatory. The study site is located in south Ecuador between 3400-3900 m in elevation. We used a nested monitoring system with eight catchments (20-753 ha) to measure hydrometric data since December 2010. Biweekly samples of rainfall, streamflow, and soil water at low tension were collected for three years (May 2011-May2014) and analyzed for water stable isotopes. We conducted an isotopic characterization of rainfall, streamflow, and soil waters to investigate runoff generation. These data were also integrated into a lumped model to estimate the mean transit time (MTT) and to investigate landscape features that control its variability. The isotopic characterization evidenced that the water stored in the shallow organic horizon of the Histosol soils (Andean wetlands) located near the streams is the major contributor of water to the streams year-round, whereas the water draining through the hillslope soils, the Andosols, regulates discharge by recharging the wetlands at the valley bottoms. The MTT evaluation indicated relatively short MTTs (0.15-0.73 yr) linked to short subsurface flow paths of water. We also found evidence for topographic controls on the MTT variability. These results reveal that: 1) the ecohydrology of this ecosystem is dominated by shallow subsurface flow in the organic horizon of the soils and 2) the combination of the high storage capacity of the Andean wetlands and the slope of the catchments controls runoff generation and the high water regulation capacity of the ecosystem.

Plant Nutrition 2: Macronutrients (N, P, K, S, Mg, and Ca)

PubMed Central

2014-01-01

Summary In the second of three lessons spanning the topic of Plant Nutrition, we examine how macronutrients affect plant growth. Specifically, we look at (1) the availability of nutrients in the soil along with the effects of soil microbes and physical properties on their availability; (2) nutrient uptake from the external environment, across plasma membranes and into plant cells; (3) in some cases, the assimilation of the nutrient into organic molecules; (4) the distribution and redistribution of nutrients throughout the plant; and (5) regulation of these processes. In parallel, we examine the genetic basis of a plant's nutrient use efficiency (NUE) and evaluate strategies by which to replenish nutrients that growing plants extract from soil.

Probing metabolic processes of intact soil microbial communities using position-specific 13C-labeled glucose

NASA Astrophysics Data System (ADS)

Fairbanks, D. E.; Hungate, B. A.; KOCH, G. W.; Schwartz, E.; Dijkstra, P.

2012-12-01

Soils represent one of the largest carbon pools in the terrestrial biosphere and fluxes into or out of this pool may feedback to current climate change. Understanding the mechanisms behind microbial processes regulating C cycling, microbial turnover, and soil organic matter stabilization is hindered by our lack of understanding of the details of microbial physiology in soils. Position-specific 13C labeled metabolic tracers are proposed as a new way to probe microbial community energy production, biosynthesis, C use efficiency (the proportion of substrate incorporated into microbial biomass), and enables the determination of C fluxes through the various C metabolic pathways. We determined the 13CO2 production from microbial communities within a one hour time frame by adding six isotopomers (1-13C, 2-13C, 3-13C, 4-13C, 5-13C, 6-13C) of glucose in parallel incubations using a young volcanic soil (Pinyon-juniper wood, near Sunset Crater, Flagstaff, Arizona). We compared the measured rates of position-specific 13CO2 production with modeled results based on glucose (1-13C and U-13C) and pyruvate (1-13C and 2,3-13C) incubations. These labeling and modeling techniques may improve our ability to analyze the biochemistry and ecophysiology of intact soil microbial communities.

Functional microbial community response to nutrient pulses by artificial groundwater recharge practice in surface soils and subsoils.

PubMed

Schütz, Kirsten; Kandeler, Ellen; Nagel, Peter; Scheu, Stefan; Ruess, Liliane

2010-06-01

Subsurface microorganisms are essential constituents of the soil purification processes associated with groundwater quality. In particular, soil enzyme activity determines the biodegradation of organic compounds passing through the soil profile. Transects from surface soil to a depth of 3.5 m were investigated for microbial and chemical soil characteristics at two groundwater recharge sites and one control site. The functional diversity of the microbial community was analyzed via the activity of eight enzymes. Acid phosphomonoesterase was dominant across sites and depths, followed by L-leucine aminopeptidase and beta-glucosidase. Structural [e.g. phospholipid fatty acid (PLFA) pattern] and functional microbial diversities were linked to each other at the nonwatered site, whereas amendment with nutrients (DOC, NO(3)(-)) by flooding uncoupled this relationship. Microbial biomass did not differ between sites, whereas microbial respiration was the highest at the watered sites. Hence, excess nutrients available due to artificial groundwater recharge could not compensate for the limitation by others (e.g. phosphorus as assigned by acid phosphomonoesterase activity). Instead, at a similar microbial biomass, waste respiration via overflow metabolism occurred. In summary, ample supply of carbon by flooding led to a separation of decomposition and microbial growth, which may play an important role in regulating purification processes during groundwater recharge.

Soil Organic Carbon and Its interaction with Minerals in Two Hillslopes with Different Climates and Erosion Processes

NASA Astrophysics Data System (ADS)

Wang, X.; Yoo, K.; Wackett, A. A.; Gutknecht, J.; Amundson, R.; Heimsath, A. M.

2017-12-01

Climate and topography have been widely recognized as important factors regulating soil organic carbon (SOC) dynamics but their interactive effects on SOC storage and its pools remain poorly constrained. Here we aimed to evaluate SOC storages and carbon-mineral interactions along two hillslope transects with moderately different climates (MAP: 549 mm vs. 816 mm) in Southeastern Australia. We sampled soil along the convex (eroding)-to-convergent (depositional) continuum at each hillslope transect and conducted size and density fractionation of these samples. In responses to the difference in climate factor, SOC inventories of eroding soils were twice as large at the wetter site compared with the drier site but showed little difference between two sites in depositional soils. These trends in SOC inventories were primarily controlled by SOC concentrations and secondarily by soil thicknesses. Similar patterns were observed for mineral associated organic carbon (MOC), and the abundances of MOC were controlled by the two independently operating processes affecting MOC concentration and fine-heavy fraction minerals. The contents and species of secondary clay and iron oxide minerals, abundances of particulate organic carbon, and bioturbation affected MOC concentrations. In contrast, the abundances of fine-heavy fraction minerals were impacted by erosion mechanisms that uniquely responded to regional- and micro- climate conditions. Consequently, topographic influences on SOC inventories and carbon-mineral interactions were more strongly pronounced in the drier climate where vegetation and erosion mechanisms were sensitive to microclimate. Our results highlight the significance of understanding topography and erosional processes in capturing climatic effects on soil carbon dynamics.

Industrious leaf cutter ants and their carbon footprints

NASA Astrophysics Data System (ADS)

Swanson, A. C.; Dierick, D.; Trahan, N. A.; Allen, M. F.; Schwendenmann, L.; Harmon, T. C.; Oberbauer, S. F.; Fernandez Bou, A. S.; Zelikova, T. J.

2017-12-01

Leaf cutter ants (LCA) are considered ecosystem engineers in Neotropical forest ecosystems because they alter physical and environmental conditions for other organisms. LCA excavate large underground nests, maintaining intricate tunnels and fungal and waste chambers, and they continuously bring in vast amounts of fresh leaf material. In order to understand their ecosystem-wide impacts, we set out to determine whether their engineering activities fundamentally alter soil structure, soil nutrient pools, and gas fluxes in a wet tropical rainforest in Costa Rica. To directly compare LCA nest to non-nest sites, we utilized embedded sensor arrays with series of soil moisture, CO2, O2, and temperature sensors placed at four soil depths and automated minirhizotrons (AMR) to measure root and hyphal production and turnover. We also collected soils for biogeochemical analyses and measured soil CO2 fluxes and carbon isotope ratios of below-ground CO2 for two years. Our measurements confirmed that LCA alter their soil environment to regulate internal soil CO2 concentrations, moisture, and temperature, increasing O2 concentrations in the process. There were marked differences in soil structure inside nests relative to non-nests and these were associated with increased root and hyphal production and turnover in nests. Soil C, N, P, and their respective degrading enzymes were highly variable among sites and between nests and controls but N and P increased with soil depth and were generally higher in nests than controls. Contrary to our expectations, C mineralization rates were lower in nests but CO2 fluxes were high from nest vents and similar to non-nests elsewhere. At the system scale, LCA appear to fundamentally change the soil environment inside their nests and create spatial heterogeneity in biogeochemical processes and root and hyphal growth, influencing the overall C balance of Neotropical forests.

Proposal of a sequential treatment methodology for the safe reuse of oil sludge-contaminated soil.

PubMed

Mater, L; Sperb, R M; Madureira, L A S; Rosin, A P; Correa, A X R; Radetski, C M

2006-08-25

In this study sequential steps were used to treat and immobilize oil constituents of an oil sludge-contaminated soil. Initially, the contaminated soil was oxidized by a Fenton type reaction (13 wt% for H(2)O(2); 10mM for Fe(2+)). The oxidative treatment period of 80 h was carried out under three different pH conditions: 20 h at pH 6.5, 20 h at pH 4.5, and 40 h at pH 3.0. The oxidized contaminated sample (3 kg) was stabilized and solidified for 2h with clay (1 kg) and lime (2 kg). Finally, this mixture was solidified by sand (2 kg) and Portland cement (4 kg). In order to evaluate the efficiency of different processes to treat and immobilize oil contaminants of the oil sludge-contaminated soil, leachability and solubility tests were performed and extracts were analyzed according to the current Brazilian waste regulations. Results showed that the Fenton oxidative process was partially efficient in degrading the oil contaminants in the soil, since residual concentrations were found for the PAH and BTEX compounds. Leachability tests showed that clay-lime stabilization/solidification followed by Portland cement stabilization/solidification was efficient in immobilizing the recalcitrant and hazardous constituents of the contaminated soil. These two steps stabilization/solidification processes are necessary to enhance environmental protection (minimal leachability) and to render final product economically profitable. The treated waste is safe enough to be used on environmental applications, like roadbeds blocks.

Transformation of soil organics under extreme climate events: a project description

NASA Astrophysics Data System (ADS)

Blagodatskaya, Evgenia

2017-04-01

Recent climate scenarios predict not only continued global warming but also an increased frequency and intensity of extreme climatic events such as strong changes in temperature and precipitation with unusual regional dynamics. Weather anomalies at European territory of Russia are currently revealed as long-term drought and strong showers in summer and as an increased frequency of soil freezing-thawing cycles. Climate extremes totally change biogeochemical processes and elements cycling both at the ecosystem level and at the level of soil profile mainly affecting soil biota. Misbalance in these processes can cause a reduction of soil carbon stock and an increase of greenhouse gases emission. Our project aims to reveal the transformation mechanisms of soil organic matter caused by extreme weather events taking into consideration the role of biotic-abiotic interactions in regulation of formation, maintenance and turnover of soil carbon stock. Our research strategy is based on the novel concept considering extreme climatic events (showers after long-term droughts, soil flooding, freezing-thawing) as abiotic factors initiating a microbial succession. Study on stoichiometric flexibility of plants under climate extremes as well as on resulting response of soil heterotrophs on stoichiometric changes in substrate will be used for experimental prove and further development of the theory of ecological stoichiometry. The results enable us to reveal the mechanisms of biotic - abiotic interactions responsible for the balance between mobilization and stabilization of soil organic matter. Identified mechanisms will form the basis of an ecosystem model enabled to predict the effects of extreme climatic events on biogenic carbon cycle in the biosphere.

Nitrous oxide emissions from soils: how well do we understand the processes and their controls?

PubMed Central

Butterbach-Bahl, Klaus; Baggs, Elizabeth M.; Dannenmann, Michael; Kiese, Ralf; Zechmeister-Boltenstern, Sophie

2013-01-01

Although it is well established that soils are the dominating source for atmospheric nitrous oxide (N2O), we are still struggling to fully understand the complexity of the underlying microbial production and consumption processes and the links to biotic (e.g. inter- and intraspecies competition, food webs, plant–microbe interaction) and abiotic (e.g. soil climate, physics and chemistry) factors. Recent work shows that a better understanding of the composition and diversity of the microbial community across a variety of soils in different climates and under different land use, as well as plant–microbe interactions in the rhizosphere, may provide a key to better understand the variability of N2O fluxes at the soil–atmosphere interface. Moreover, recent insights into the regulation of the reduction of N2O to dinitrogen (N2) have increased our understanding of N2O exchange. This improved process understanding, building on the increased use of isotope tracing techniques and metagenomics, needs to go along with improvements in measurement techniques for N2O (and N2) emission in order to obtain robust field and laboratory datasets for different ecosystem types. Advances in both fields are currently used to improve process descriptions in biogeochemical models, which may eventually be used not only to test our current process understanding from the microsite to the field level, but also used as tools for up-scaling emissions to landscapes and regions and to explore feedbacks of soil N2O emissions to changes in environmental conditions, land management and land use. PMID:23713120

7 CFR 319.69-5 - Types of soil authorized for packing.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 7 Agriculture 5 2010-01-01 2010-01-01 false Types of soil authorized for packing. 319.69-5 Section 319.69-5 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH... Regulations § 319.69-5 Types of soil authorized for packing. The following types of soil or earth are...

7 CFR 319.69-5 - Types of soil authorized for packing.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 7 Agriculture 5 2011-01-01 2011-01-01 false Types of soil authorized for packing. 319.69-5 Section 319.69-5 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH... Regulations § 319.69-5 Types of soil authorized for packing. The following types of soil or earth are...

7 CFR 319.69-5 - Types of soil authorized for packing.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 7 Agriculture 5 2014-01-01 2014-01-01 false Types of soil authorized for packing. 319.69-5 Section 319.69-5 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH... Regulations § 319.69-5 Types of soil authorized for packing. The following types of soil or earth are...

7 CFR 319.69-5 - Types of soil authorized for packing.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 7 Agriculture 5 2013-01-01 2013-01-01 false Types of soil authorized for packing. 319.69-5 Section 319.69-5 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH... Regulations § 319.69-5 Types of soil authorized for packing. The following types of soil or earth are...

7 CFR 319.69-5 - Types of soil authorized for packing.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 7 Agriculture 5 2012-01-01 2012-01-01 false Types of soil authorized for packing. 319.69-5 Section 319.69-5 Agriculture Regulations of the Department of Agriculture (Continued) ANIMAL AND PLANT HEALTH... Regulations § 319.69-5 Types of soil authorized for packing. The following types of soil or earth are...

Simulation of nitrous oxide emissions at field scale using the SPACSYS model.

PubMed

Wu, L; Rees, R M; Tarsitano, D; Zhang, Xubo; Jones, S K; Whitmore, A P

2015-10-15

Nitrous oxide emitted to the atmosphere via the soil processes of nitrification and denitrification plays an important role in the greenhouse gas balance of the atmosphere and is involved in the destruction of stratospheric ozone. These processes are controlled by biological, physical and chemical factors such as growth and activity of microbes, nitrogen availability, soil temperature and water availability. A comprehensive understanding of these processes embodied in an appropriate model can help develop agricultural mitigation strategies to reduce greenhouse gas emissions, and help with estimating emissions at landscape and regional scales. A detailed module to describe the denitrification and nitrification processes and nitrogenous gas emissions was incorporated into the SPACSYS model to replace an earlier module that used a simplified first-order equation to estimate denitrification and was unable to distinguish the emissions of individual nitrogenous gases. A dataset derived from a Scottish grassland experiment in silage production was used to validate soil moisture in the top 10 cm soil, cut biomass, nitrogen offtake and N2O emissions. The comparison between the simulated and observed data suggested that the new module can provide a good representation of these processes and improve prediction of N2O emissions. The model provides an opportunity to estimate gaseous N emissions under a wide range of management scenarios in agriculture, and synthesises our understanding of the interaction and regulation of the processes. Copyright © 2015. Published by Elsevier B.V.

Understanding Arsenic Dynamics in Agronomic Systems to ...

EPA Pesticide Factsheets

This review is on arsenic in agronomic systems, and covers processes that influence the entry of arsenic into the human food supply. The scope is from sources of arsenic (natural and anthropogenic) in soils, biogeochemical and rhizosphere processes that control arsenic speciation and availability, through to mechanisms of uptake by crop plants and potential mitigation strategies. This review makes a case for taking steps to prevent or limit crop uptake of arsenic, wherever possible, and to work toward a long-term solution to the presence of arsenic in agronomic systems. The past two decades have seen important advances in our understanding of how biogeochemical and physiological processes influence human exposure to soil arsenic, and thus must now prompt an informed reconsideration and unification of regulations to protect the quality of agricultural and residential soils. Consumption of staple foods such as rice, beverages such as apple juice, or vegetables grown in historically arsenic-contaminated soils is now recognized as a tangible route of arsenic exposure that, in many cases, is more significant than exposure from drinking water. Understanding the sources of arsenic to crop plants and the factors that influence them is key to reducing exposure now and preventing exposure in future. In addition to the abundant natural sources of arsenic, there are a large number of industrial and agricultural sources of arsenic to the soil; from mining wastes, coal fly

Insects and diseases

Treesearch

John W. Couston

2009-01-01

Insects and diseases are a natural part of forested ecosystems. Their activity is partially regulated by biotic factors, e.g., host abundance, host quality; physical factors, e.g., soil, climate; and disturbances (Berryman 1986). Insects and diseases can influence both forest patterns and forest processes by causing, for example, defoliation and mortality. These...

Southwestern Grassland Ecology

Treesearch

Paulette L. Ford; Deborah U. Potter; Rosemary Pendleton; Burton Pendleton; Wayne A. Robbie; Gerald J. Gottfried

2004-01-01

This chapter provides a brief overview, and selected in-depth coverage, of the factors and processes that have formed, and continue to shape, our Southwestern grasslands. In general, this chapter looks at how distributions of grasslands are regulated by soils and climate, and modified by disturbance (natural and/or anthropogenic). The attendant ecological components of...

The increasing importance of atmospheric demand in regulating ecosystem functioning

USDA-ARS?s Scientific Manuscript database

The profound effects of hydrologic stress on ecosystem productivity, water use, and mortality are driven by two variables – soil moisture supply and atmospheric demand for water. The impact of these two drivers on ecosystem processes has historically been difficult to disentangle, and often the rol...

Plant effects on soil denitrification - a review of potential mechanisms

NASA Astrophysics Data System (ADS)

Malique, Francois; Butterbach-Bahl, Klaus; Dannenmann, Michael

2017-04-01

Denitrification is a microbial process occurring in soils, both producing and consuming the potent greenhouse gas nitrous oxide (NO), competing for nitrate with plants and hydrological leaching pathways, removing nutrients and reactive nitrogen from the biosphere, and closing the global nitrogen cycle. Despite its obvious importance, denitrification remained among the least well quantified biogeochemical processes in soils. This is due to enormous methodological difficulties involved in the direct quantification of soil microbial denitrification rates (mainly with regard to the terminal product N2) and the denitrification nitrogen gas product ratios (NO:N2O:N2), Plants may affect denitrification through a myriad of mechanisms such as e.g., competition for nitrate and water, through oxygen consumption, by regulating litter quality and changing soil pH, and via the exudation of labile carbon or secondary plant compounds involved in shaping the rhizospheric microbial community. However, plant effects on denitrification so far hardly were quantified so that the actual extent of plant control on denitrification is largely unknown. Here, we summarize the current knowledge on mechanisms how plants can affect denitrification rates and N gas product ratios in soils at temporal scales from hours to days and years. We review earlier research to quantify plant effects on denitrification as well as critically discuss the limited methods currently available to quantify plant-soil-denitrifier interactions. Finally, we provide pointers to use plants as tools to manage denitrification, e.g. to improve N use efficiency in agricultural ecosystems and to minimize soil nitrous oxide emissions.

Potential soil carbon sequestration in overgrazed grassland ecosystems

NASA Astrophysics Data System (ADS)

Conant, Richard T.; Paustian, Keith

2002-12-01

Excessive grazing pressure is detrimental to plant productivity and may lead to declines in soil organic matter. Soil organic matter is an important source of plant nutrients and can enhance soil aggregation, limit soil erosion, and can also increase cation exchange and water holding capacities, and is, therefore, a key regulator of grassland ecosystem processes. Changes in grassland management which reverse the process of declining productivity can potentially lead to increased soil C. Thus, rehabilitation of areas degraded by overgrazing can potentially sequester atmospheric C. We compiled data from the literature to evaluate the influence of grazing intensity on soil C. Based on data contained within these studies, we ascertained a positive linear relationship between potential C sequestration and mean annual precipitation which we extrapolated to estimate global C sequestration potential with rehabilitation of overgrazed grassland. The GLASOD and IGBP DISCover data sets were integrated to generate a map of overgrazed grassland area for each of four severity classes on each continent. Our regression model predicted losses of soil C with decreased grazing intensity in drier areas (precipitation less than 333 mm yr-1), but substantial sequestration in wetter areas. Most (93%) C sequestration potential occurred in areas with MAP less than 1800 mm. Universal rehabilitation of overgrazed grasslands can sequester approximately 45 Tg C yr-1, most of which can be achieved simply by cessation of overgrazing and implementation of moderate grazing intensity. Institutional level investments by governments may be required to sequester additional C.

Principal factors of soil spatial heterogeneity and ecosystem services at the Central Chernozemic Region of Russia

NASA Astrophysics Data System (ADS)

Vasenev, Ivan; Valentini, Riccardo

2013-04-01

The essential spatial heterogeneity is mutual feature for most natural and man-changed soils at the Central Chernozemic Region of Russia which is not only one of the biggest «food baskets» in RF but very important regulator of ecosystem principal services at the European territory of Russia. The original spatial heterogeneity of dominated here forest-steppe and steppe Chernozems and the other soils has been further complicated by a specific land-use history and different-direction soil successions due to environmental changes and more than 1000-year history of human impacts. The carried out long-term researches of representative natural, rural and urban landscapes in Kursk, Orel, Tambov and Voronezh oblasts give us the regional multi-factorial matrix of elementary soil cover patterns (ESCP) with different land-use practices and history, soil-geomorphologic features, environmental and microclimate conditions. The validation and ranging of the limiting factors of ESCP regulation and development, ecosystem principal services, land functional qualities and agroecological state have been done for dominating and most dynamical components of ESCP regional-typological forms - with application of regional and local GIS, soil spatial patterns mapping, traditional regression kriging, correlation tree models. The outcomes of statistical modeling show the essential amplification of erosion, dehumification and CO2 emission, acidification and alkalization, disaggregation and overcompaction processes due to violation of agroecologically sound land-use systems and traditional balances of organic matter, nutrients, Ca and Na in agrolandscapes. Due to long-term intensive and out-of-balance land-use practices the famous Russian Chernozems begin to lose not only their unique natural features of (around 1 m of humus horizon, 4-6% of Corg and favorable agrophysical features), but traditional soil cover patterns, ecosystem services and agroecological functions. Key-site monitoring results and regional generalized data showed 1-1.5 % Corg lost during last 50 years period and active processes of CO2 emission and humus profile eluvial-illuvial redistribution too. Forest-steppe Chernozems are usually characterized by higher stability than steppe ones. The ratio between erosive and biological losses in humus supplies can be ten¬tatively estimated as fifty-fifty with strong spatial variability due to slope and land-use parameters. These processes have essentially different sets of environmental consequences and ecosystem services that we need to understand in frame of agroecological problems development prediction. A drop of Corg content below threshold "humus limiting content" values (3-4% of Corg) considerably reduces effectiveness of used fertilizers and possibility of sustainable agronomy here. This problem environmental and agroecological situation can be essentially improved by new federal law on environmentally friendly agriculture but it's draft is still in the process of deliberation. Quantitative analysis of principal ecosystem services, soil cover patterns and degradation processes in parameters of land qualities help us in developing different-scale projects for agricultural and urban land-use, taking into attention not only economical benefits but environmental functions too. The conceptions of ecosystem services and local land resource management are becoming more and more popular at the Central Chernozemic Region of Russia due to innovation application of basic agroecology, ecological monitoring and soil science achievements.

CO2 fluxes and ecosystem dynamics at five European treeless peatlands - merging data and process oriented modelling

NASA Astrophysics Data System (ADS)

Metzger, C.; Jansson, P.-E.; Lohila, A.; Aurela, M.; Eickenscheidt, T.; Belelli-Marchesini, L.; Dinsmore, K. J.; Drewer, J.; van Huissteden, J.; Drösler, M.

2014-06-01

The carbon dioxide (CO2) exchange of five different peatland systems across Europe with a wide gradient in landuse intensity, water table depth, soil fertility and climate was simulated with the process oriented CoupModel. The aim of the study was to find out to what extent CO2 fluxes measured at different sites, can be explained by common processes and parameters implemented in the model. The CoupModel was calibrated to fit measured CO2 fluxes, soil temperature, snow depth and leaf area index (LAI) and resulting differences in model parameters were analysed. Finding site independent model parameters would mean that differences in the measured fluxes could be explained solely by model input data: water table, meteorological data, management and soil inventory data. The model, utilizing a site independent configuration for most of the parameters, captured seasonal variability in the major fluxes well. Parameters that differed between sites included the rate of soil organic decomposition, photosynthetic efficiency, and regulation of the mobile carbon (C) pool from senescence to shooting in the next year. The largest difference between sites was the rate coefficient for heterotrophic respiration. Setting it to a common value would lead to underestimation of mean total respiration by a factor of 2.8 up to an overestimation by a factor of 4. Despite testing a wide range of different responses to soil water and temperature, heterotrophic respiration rates were consistently lowest on formerly drained sites and highest on the managed sites. Substrate decomposability, pH and vegetation characteristics are possible explanations for the differences in decomposition rates. Applying common parameter values for the timing of plant shooting and senescence, and a minimum temperature for photosynthesis, had only a minor effect on model performance, even though the gradient in site latitude ranged from 48° N (South-Germany) to 68° N (northern Finland). This was also true for common parameters defining the moisture and temperature response for decomposition. CoupModel is able to describe measured fluxes at different sites or under different conditions, providing that the rate of soil organic decomposition, photosynthetic efficiency, and the regulation of the mobile carbon (C) pool are estimated from available information on specific soil conditions, vegetation and management of the ecosystems.

Soil and plant factors influencing the accumulation of heavy metals by plants.

PubMed Central

Cataldo, D A; Wildung, R E

1978-01-01

The use of plants to monitor heavy metal pollution in the terrestrial environment must be based on a cognizance of the complicated, integrated effects of pollutant source and soil-plant variables. To be detectable in plants, pollutant sources must significantly increase the plant available metal concentration in soil. The major factor governing metal availability to plants in soils is the solubility of the metal associated with the solid phase, since in order for root uptake to occur, a soluble species must exist adjacent to the root membrane for some finite period. The rate of release and form of this soluble species will have a strong influence on the rate and extent of uptake and, perhaps, mobility and toxicity in the plant and consuming animals. The factors influencing solubility and form of available metal species in soil vary widely geographically and include the concentration and chemical form of the element entering soil, soil properties (endogenous metal concentration, mineralogy, particle size distribution), and soil processes (e.g., mineral weathering, microbial activity), as these influence the kinetics of sorption reactions, metal concentration in solution and the form of soluble and insoluble chemical species. The plant root represents the first barrier to the selective accumulation of ions present in soil solution. Uptake and kinetic data for nutrient ions and chemically related nonnutrient analogs suggest that metabolic processes associated with root absorption of nutrients regulate both the affinity and rate of absorption of specific nonnutrient ions. Detailed kinetic studies of Ni, Cd, and Tl uptake by intact plants demonstrate multiphasic root absorption processes over a broad concentration range, and the use of transport mechanisms in place for the nutrient ions Cu, Zn, and K. Advantages and limitations of higher plants as indicators of increased levels of metal pollution are discussed in terms of these soil and plant phenomena. PMID:367766

Factors controlling soil organic carbon stability along a temperate forest altitudinal gradient

PubMed Central

Tian, Qiuxiang; He, Hongbo; Cheng, Weixin; Bai, Zhen; Wang, Yang; Zhang, Xudong

2016-01-01

Changes in soil organic carbon (SOC) stability may alter carbon release from the soil and, consequently, atmospheric CO2 concentration. The mean annual temperature (MAT) can change the soil physico-chemical characteristics and alter the quality and quantity of litter input into the soil that regulate SOC stability. However, the relationship between climate and SOC stability remains unclear. A 500-day incubation experiment was carried out on soils from an 11 °C-gradient mountainous system on Changbai Mountain in northeast China. Soil respiration during the incubation fitted well to a three-pool (labile, intermediate and stable) SOC decomposition model. A correlation analysis revealed that the MAT only influenced the labile carbon pool size and not the SOC stability. The intermediate carbon pool contributed dominantly to cumulative carbon release. The size of the intermediate pool was strongly related to the percentage of sand particle. The decomposition rate of the intermediate pool was negatively related to soil nitrogen availability. Because both soil texture and nitrogen availability are temperature independent, the stability of SOC was not associated with the MAT, but was heavily influenced by the intrinsic processes of SOC formation and the nutrient status. PMID:26733344

Evaluation of different field methods for measuring soil water infiltration

NASA Astrophysics Data System (ADS)

Pla-Sentís, Ildefonso; Fonseca, Francisco

2010-05-01

Soil infiltrability, together with rainfall characteristics, is the most important hydrological parameter for the evaluation and diagnosis of the soil water balance and soil moisture regime. Those balances and regimes are the main regulating factors of the on site water supply to plants and other soil organisms and of other important processes like runoff, surface and mass erosion, drainage, etc, affecting sedimentation, flooding, soil and water pollution, water supply for different purposes (population, agriculture, industries, hydroelectricity), etc. Therefore the direct measurement of water infiltration rates or its indirect deduction from other soil characteristics or properties has become indispensable for the evaluation and modelling of the previously mentioned processes. Indirect deductions from other soil characteristics measured under laboratory conditions in the same soils, or in other soils, through the so called "pedo-transfer" functions, have demonstrated to be of limited value in most of the cases. Direct "in situ" field evaluations have to be preferred in any case. In this contribution we present the results of past experiences in the measurement of soil water infiltration rates in many different soils and land conditions, and their use for deducing soil water balances under variable climates. There are also presented and discussed recent results obtained in comparing different methods, using double and single ring infiltrometers, rainfall simulators, and disc permeameters, of different sizes, in soils with very contrasting surface and profile characteristics and conditions, including stony soils and very sloping lands. It is concluded that there are not methods universally applicable to any soil and land condition, and that in many cases the results are significantly influenced by the way we use a particular method or instrument, and by the alterations in the soil conditions by the land management, but also due to the manipulation of the surface soil before and during the measurement. Due to the commonly found high variability, natural or induced by land management, of the soil surface and subsurface hydrological properties, and to the limitations imposed by the requirements of water for the measurements, there is proposed a simple and handy method, which do not use high volumes of water, adaptable to very different soil and land conditions, and that allow many repeated measurements with acceptable accuracy for most of the purposes. References Pla, I., 1997. A soil water balance model for monitoring soil erosion processes and effects on steep lands in the tropics. Soil Technology. 11(1):17-30. Elsevier Pla, I., 2006. Hydrological approach for assessing desertification processes in the Mediterranean region. In W.G. Kepner et al. (Editors), Desertification in the Mediterranean Region. A Security Issue. 579-600 Springer. Heidelberg (Germany) Reynolds W.D., B.T. Bowman, R.R. Brunke, C.F. Drury and C.S. Tan. 2000. Comparison of Tension Infiltrometer, Pressure Infiltrometer, and Soil Core Estimates of Saturated Hydraulic Conductivity . Soil Science Society of America Journal 64:478-484 Segal, E., S.A.Bradford, P. Shouse; N. Lazarovich, and D. Corwin. 2008. Integration of Hard and Soft Data to Characterize Field-Scale Hydraulic Properties for Flow and Transport Studies. Vadose Zone J 7:878-889 Young, E. 1991. Infiltration measurements, a review. Hydrological processes 5: 309-320.

Pine Forest Harvest Leads to Decade-Scale Alterations in Soil Fungal Communities

NASA Astrophysics Data System (ADS)

Boutton, T. W.; Mushinski, R. M.; Gentry, T. J.

2016-12-01

Forestlands provide a multitude of ecosystem services, and sustainable management is crucial to maintaining the benefits of these ecosystems. Intensive organic matter removal (OMR) of logging residues and forest litter during forest harvest may result in long-term alterations to soil properties and processes. Because fungal activity regulates essential biogeochemical processes in forestlands, changes in soil fungal community structure following OMR may translate into altered soil function. Using a replicated field experiment in southern pine forest in eastern Texas, USA, we sampled soil to a depth of 1 m to assess the impact of intensive OMR on soil fungal communities. Soils were collected from replicated (n = 3 ) loblolly pine (Pinus taeda L.) stands subjected to 3 different harvest intensities (i.e., unharvested old growth stands, bole-only harvest stands, and whole-tree harvest + forest floor removal stands) in 1997. Nearly two decades after trees were harvested and replanted, next generation sequencing of the fungal internal transcribed spacer showed the diversity and community structure of the entire fungal community was altered relative to the unharvested stands. The relative abundance of Ascomycetes increased as OMR intensity increased and was positively correlated to concurrent changes in soil pH. The community composition of fungal functional groups (e.g., ecto- and arbuscular mycorrhizal, saprophytic fungi) was also altered by OMR. The most abundant taxa, Russula exhibited significant reductions in response to increasing intensity of OMR. Results of this study illustrate a linkage between anthropogenically-induced aboveground perturbation, edaphic factors, and belowground soil fungal communities of southern pine forests. Also, these results indicate that tree harvesting effects on soil fungal communities can persist for decades post-harvest, with potential implications for soil functional characteristics.

Soil water content drives spatiotemporal patterns of CO2 and N2O emissions from a Mediterranean riparian forest soil

NASA Astrophysics Data System (ADS)

Poblador, Sílvia; Lupon, Anna; Sabaté, Santiago; Sabater, Francesc

2017-09-01

Riparian zones play a fundamental role in regulating the amount of carbon (C) and nitrogen (N) that is exported from catchments. However, C and N removal via soil gaseous pathways can influence local budgets of greenhouse gas (GHG) emissions and contribute to climate change. Over a year, we quantified soil effluxes of carbon dioxide (CO2) and nitrous oxide (N2O) from a Mediterranean riparian forest in order to understand the role of these ecosystems on catchment GHG emissions. In addition, we evaluated the main soil microbial processes that produce GHG (mineralization, nitrification, and denitrification) and how changes in soil properties can modify the GHG production over time and space. Riparian soils emitted larger amounts of CO2 (1.2-10 g C m-2 d-1) than N2O (0.001-0.2 mg N m-2 d-1) to the atmosphere attributed to high respiration and low denitrification rates. Both CO2 and N2O emissions showed a marked (but antagonistic) spatial gradient as a result of variations in soil water content across the riparian zone. Deep groundwater tables fueled large soil CO2 effluxes near the hillslope, while N2O emissions were higher in the wet zones adjacent to the stream channel. However, both CO2 and N2O emissions peaked after spring rewetting events, when optimal conditions of soil water content, temperature, and N availability favor microbial respiration, nitrification, and denitrification. Overall, our results highlight the role of water availability on riparian soil biogeochemistry and GHG emissions and suggest that climate change alterations in hydrologic regimes can affect the microbial processes that produce GHG as well as the contribution of these systems to regional and global biogeochemical cycles.

Beryllium-7 and lead-210 chronometry of modern soil processes: The Linked Radionuclide aCcumulation model, LRC

NASA Astrophysics Data System (ADS)

Landis, Joshua D.; Renshaw, Carl E.; Kaste, James M.

2016-05-01

Soil systems are known to be repositories for atmospheric carbon and metal contaminants, but the complex processes that regulate the introduction, migration and fate of atmospheric elements in soils are poorly understood. This gap in knowledge is attributable, in part, to the lack of an established chronometer that is required for quantifying rates of relevant processes. Here we develop and test a framework for adapting atmospheric lead-210 chronometry (210Pb; half-life 22 years) to soil systems. We propose a new empirical model, the Linked Radionuclide aCcumulation model (LRC, aka "lark"), that incorporates measurements of beryllium-7 (7Be; half-life 54 days) to account for 210Pb penetration of the soil surface during initial deposition, a process which is endemic to soils but omitted from conventional 210Pb models (e.g., the Constant Rate of Supply, CRS model) and their application to sedimentary systems. We validate the LRC model using the 1963-1964 peak in bomb-fallout americium-241 (241Am; half-life of 432 years) as an independent, corroborating time marker. In three different soils we locate a sharp 241Am weapons horizon at disparate depths ranging from 2.5 to 6 cm, but with concordant ages averaging 1967 ± 4 via the LRC model. Similarly, at one site contaminated with mercury (HgT) we find that the LRC model is consistent with the recorded history of Hg emission. The close agreement of Pb, Am and Hg behavior demonstrated here suggests that organo-metallic colloid formation and migration incorporates many trace metals in universal soil processes and that these processes may be described quantitatively using atmospheric 210Pb chronometry. The 210Pb models evaluated here show that migration rates of soil colloids on the order of 1 mm yr-1 are typical, but also that these rates vary systematically with depth and are attributable to horizon-specific processes of leaf-litter decay, eluviation and illuviation. We thus interpret 210Pb models to quantify (i) exposure of the soil system to atmospheric aerosol deposition in the context of (ii) organic carbon assimilation, colloid production, and advection through the soil profile. The behavior of some other elements, such as Cs, diverges from the conservative colloid behavior exemplified by Pb and Am, and in these cases the value of empirical 210Pb chronometry models like LRC and CRS is as a comparator rather than as an absolute chronometer. We conclude that 210Pb chronometry is valuable for tracing colloidally-mediated transport of Pb and similarly-refractory metals, as well as the mobile pool of carbon in soils.

Application of magnetic methods for assessment of soil restoration in the vicinity of metallurgical copper-processing plant in Bulgaria.

PubMed

Jordanova, N; Petrovský, E; Kapicka, A; Jordanova, D; Petrov, P

2017-04-01

Copper ore mining and processing are among the most harmful anthropogenic influences for the environment and they are a subject of international and national law regulations. Recultivation of areas influenced by mining and processing industry is commonly applied and monitored in order to restore as much as possible the natural environment. In this study, environmental magnetic methods are applied in order to assess the degree of soil restoration in terms of soil development, after remediation of waste dump from Cu-processing plant. Soils developed under birch forest stands of different age (5, 15, and 25 years) as well as raw waste material were sampled along depth down to 20-30 cm. Variations in magnetic parameters and ratios obtained (magnetic susceptibility, frequency-dependent magnetic susceptibility, anhysteretic remanence (ARM), isothermal remanence (IRM), ARM/IRM 100mT ) suggest the presence of magnetic enhancement in the upper 0-15 cm, the thickness of this layer varying depending on the age of the forest stand. Magnetic mineral responsible for this enhancement is of magnetite type, while waste material contains a large amount of hematite, as evidenced by coercivity analysis of IRM acquisition curves and thermal demagnetization of composite IRM. Magnetic grain-sized proxy parameters suggest that magnetite particles are coarser, magnetically stable, while no or minor amount of superparamagnetic grains were detected at room temperature. A well-defined linear regression between the topsoil magnetic susceptibility and the approximate age of the forest stand provides an indication that the magnetic enhancement is of pedogenic origin. It is concluded that the observed magnetic enhancement of recultivated soils studied is linked to a combined effect of pedogenic contribution and possible additions of industrial ashes as a liming agent for soil restoration.

[Nitrous oxide emission, nitrification, denitrification and nitrogen mineralization during rice growing season in 2 soils from Uruguay].

PubMed

Illarze, Gabriela; Del Pino, Amabelia; Riccetto, Sara; Irisarri, Pilar

Microbial processes such as mineralization, nitrification and denitrification regulate nitrogen dynamics in the soil. The last two processes may produce nitrous oxide (N 2 O). In this work N 2 O fluxes were quantified at four moments of the rice cycle, sowing, tillering, panicle initiation and maturity, in two sites that differed mainly in their soil organic matter (OM) content, Salto (higher OM) and Treinta y Tres. Potential net N mineralization, ammonium oxidation and denitrification as well as the most probable numbers (MPN) of ammonia oxidizers and denitrifiers were determined. Potential N mineralization did not vary with the soil type and increased at rice maturity. Neither ammonia oxidation potential nor MPN were different among the soils. However, the soil with higher OM exhibited higher activity and MPN of denitrifiers, irrespective of the rice stage. In turn, at the latest phases of the crop, the MPN of denitrifiers increased coinciding with the highest mineralization potential and mineral N content of the soil. Significant differences in N 2 O flux were observed in Salto, where the highest emissions were detected at rice maturity, after the soil was drained (44.2 vs 20.8g N-N 2 O/ha d in Treinta y Tres). This work shows the importance of considering the soil type and end-of-season drainage of the rice field to elaborate GHGs (greenhouse gases) inventories. Copyright © 2017 Asociación Argentina de Microbiología. Publicado por Elsevier España, S.L.U. All rights reserved.

New regulations for radiation protection for work involving radioactive fallout emitted by the TEPCO Fukushima Daiichi APP accident--disposal of contaminated soil and wastes.

PubMed

Yasui, Shojiro

2014-01-01

The accident at the Fukushima Daiichi Atomic Power Plant that accompanied the Great East Japan Earthquake on March 11, 2011, released a large amount of radioactive material. To rehabilitate the contaminated areas, the government of Japan decided to carry out decontamination work and manage the waste resulting from decontamination. In the summer of 2013, the Ministry of the Environment planned to begin a full-scale process for waste disposal of contaminated soil and wastes removed as part of the decontamination work. The existing regulations were not developed to address such a large amount of contaminated wastes. The Ministry of Health, Labour and Welfare (MHLW), therefore, had to amend the existing regulations for waste disposal workers. The amendment of the general regulation targeted the areas where the existing exposure situation overlaps the planned exposure situation. The MHLW established the demarcation lines between the two regulations to be applied in each situation. The amendment was also intended to establish provisions for the operation of waste disposal facilities that handle large amounts of contaminated materials. Deliberation concerning the regulation was conducted when the facilities were under design; hence, necessary adjustments should be made as needed during the operation of the facilities.

Microbial Mechanisms Enhancing Soil C Storage

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zak, Donald

2015-09-24

Human activity has globally increased the amount of nitrogen (N) entering ecosystems, which could foster higher rates of C sequestration in the N-limited forests of the Northern Hemisphere. Presently, these ecosystems are a large global sink for atmospheric CO2, the magnitude of which could be influenced by the input of human-derived N from the atmosphere. Nevertheless, empirical studies and simulation models suggest that anthropogenic N deposition could have either an important or inconsequential effect on C storage in forests of the Northern Hemisphere, a set of observations that continues to fuel scientific discourse. Although a relatively simple set of physiologicalmore » processes control the C balance of terrestrial ecosystems, we still fail to understand how these processes directly and indirectly respond to greater N availability in the environment. The uptake of anthropogenic N by N-limited forest trees and a subsequent enhancement of net primary productivity have been the primary mechanisms thought to increase ecosystem C storage in Northern Hemisphere forests. However, there are reasons to expect that anthropogenic N deposition could slow microbial activity in soil, decrease litter decay, and increase soil C storage. Fungi dominate the decay of plant detritus in forests and, under laboratory conditions, high inorganic N concentrations can repress the transcription of genes coding for enzymes which depolymerize lignin in plant detritus; this observation presents the possibility that anthropogenic N deposition could elicit a similar effect under field conditions. In our 18-yr-long field experiment, we have been able to document that simulated N deposition, at a rate expected in the near future, resulted in a significant decline in cellulolytic and lignolytic microbial activity, slowed plant litter decay, and increased soil C storage (+10%); this response is not portrayed in any biogeochemical model simulating the effect of atmospheric N deposition on ecosystem C storage. Our preliminary results support the hypothesis that simulated N deposition has down-regulated the transcription of fungal genes encoding lignocellulolytic enzymes, thereby slowing litter decay and substantially increasing soil C storage over a relative short duration. The objective of this study was to understand the molecular mechanisms and metabolic processes by which simulated N deposition has slowed microbial decay of plant detritus, thereby increasing soil C storage in the wide-spread and ecologically important northern forest ecosystem. We addressed our research objective using a combination of transcriptomic and metatranscriptomic approaches in parallel with biogeochemical analyses of soil C cycling. By linking the environmental regulation of microbial genes to biogeochemical processes, we endeavor to understanding the enhanced accumulation of soil C in response to a wide-spread agent of global change.« less

Microbial hotspots and hot moments in soil

NASA Astrophysics Data System (ADS)

Kuzyakov, Yakov; Blagodatskaya, Evgenia

2015-04-01

Soils are the most heterogeneous parts of the biosphere, with an extremely high differentiation of properties and processes within nano- to macroscales. The spatial and temporal heterogeneity of input of labile organics by plants creates microbial hotspots over short periods of time - the hot moments. We define microbial hotspots as small soil volumes with much faster process rates and much more intensive interactions compared to the average soil conditions. Such hotspots are found in the rhizosphere, detritusphere, biopores (including drilosphere) and on aggregate surfaces, but hotspots are frequently of mixed origin. Hot moments are short-term events or sequences of events inducing accelerated process rates as compared to the averaged rates. Thus, hotspots and hot moments are defined by dynamic characteristics, i.e. by process rates. For this hotspot concept we extensively reviewed and examined the localization and size of hotspots, spatial distribution and visualization approaches, transport of labile C to and from hotspots, lifetime and process intensities, with a special focus on process rates and microbial activities. The fraction of active microorganisms in hotspots is 2-20 times higher than in the bulk soil, and their specific activities (i.e. respiration, microbial growth, mineralization potential, enzyme activities, RNA/DNA ratio) may also be much higher. The duration of hot moments in the rhizosphere is limited and is controlled by the length of the input of labile organics. It can last a few hours up to a few days. In the detritusphere, however, the duration of hot moments is regulated by the output - by decomposition rates of litter - and lasts for weeks and months. Hot moments induce succession in microbial communities and intense intra- and interspecific competition affecting C use efficiency, microbial growth and turnover. The faster turnover and lower C use efficiency in hotspots counterbalances the high C inputs, leading to the absence of strong increases in C stocks. Consequently, the intensification of fluxes is much stronger than the increase of pools. Maintenance of stoichiometric ratios by accelerated microbial growth in hotspots requires additional nutrients (e.g. N and P), causing their microbial mining from soil organic matter, i.e. priming effects. Consequently, priming effects are localized in microbial hotspots and are consequences of hot moments. Finally, we estimated the contribution of the hotspots to the whole soil profile and suggested that, irrespective of their volume, the hotspots are mainly responsible for the ecologically relevant processes in soil.

Ecology of Nitrogen Fixing, Nitrifying, and Denitrifying Microorganisms in Tropical Forest Soils

PubMed Central

Pajares, Silvia; Bohannan, Brendan J. M.

2016-01-01

Soil microorganisms play important roles in nitrogen cycling within forest ecosystems. Current research has revealed that a wider variety of microorganisms, with unexpected diversity in their functions and phylogenies, are involved in the nitrogen cycle than previously thought, including nitrogen-fixing bacteria, ammonia-oxidizing bacteria and archaea, heterotrophic nitrifying microorganisms, and anammox bacteria, as well as denitrifying bacteria, archaea, and fungi. However, the vast majority of this research has been focused in temperate regions, and relatively little is known regarding the ecology of nitrogen-cycling microorganisms within tropical and subtropical ecosystems. Tropical forests are characterized by relatively high precipitation, low annual temperature fluctuation, high heterogeneity in plant diversity, large amounts of plant litter, and unique soil chemistry. For these reasons, regulation of the nitrogen cycle in tropical forests may be very different from that of temperate ecosystems. This is of great importance because of growing concerns regarding the effect of land use change and chronic-elevated nitrogen deposition on nitrogen-cycling processes in tropical forests. In the context of global change, it is crucial to understand how environmental factors and land use changes in tropical ecosystems influence the composition, abundance and activity of key players in the nitrogen cycle. In this review, we synthesize the limited currently available information regarding the microbial communities involved in nitrogen fixation, nitrification and denitrification, to provide deeper insight into the mechanisms regulating nitrogen cycling in tropical forest ecosystems. We also highlight the large gaps in our understanding of microbially mediated nitrogen processes in tropical forest soils and identify important areas for future research. PMID:27468277

Plastic Films for Soil Fumigation: Permeability and Emissions Reduction

USDA-ARS?s Scientific Manuscript database

Soil fumigation is being increasingly regulated to protect human and environmental health. Current California regulations are based on field data and, in effect, assume that use of a standard polyethylene tarp does not reliably reduce emissions. Plastic tarps used to cover the soil surface during so...

Combined effects of tides, evaporation and rainfall on the soil conditions in an intertidal creek-marsh system

NASA Astrophysics Data System (ADS)

Xin, Pei; Zhou, Tingzhang; Lu, Chunhui; Shen, Chengji; Zhang, Chenming; D'Alpaos, Andrea; Li, Ling

2017-05-01

Salt marshes, distributed globally at the land-ocean interface, are a highly productive eco-system with valuable ecological functions. While salt marshes are affected by various eco-geo-hydrological processes and factors, soil moisture and salinity affect plant growth and play a key role in determining the structure and functions of the marsh ecosystem. To examine the variations of both soil parameters, we simulated pore-water flow and salt transport in a creek-marsh system subjected to spring-neap tides, evaporation and rainfall. The results demonstrated that within a sandy-loam marsh, the tide-induced pore-water circulation averted salt build-up due to evaporation in the near-creek area. In the marsh interior where the horizontal drainage was weak, density-driven flow was responsible for dissipating salt accumulation in the shallow soil layer. In the sandy-loam marsh, the combined influences of spring-neap tides, rainfall and evaporation led to the formation of three characteristic zones, c.f., a near-creek zone with low soil water saturation (i.e., well-aerated) and low pore-water salinity as affected by the semi-diurnal spring tides, a less well-aerated zone with increased salinity where drainage occurred during the neap tides, and an interior zone where evaporation and rainfall infiltration regulated the soil conditions. These characteristics, however, varied with the soil type. In low-permeability silt-loam and clay-loam marshes, the tide-induced drainage weakened and the soil conditions over a large area became dominated by evaporation and rainfall. Sea level rise was found to worsen the soil aeration condition but inhibit salt accumulation due to evaporation. These findings shed lights on the soil conditions underpinned by various hydrogeological processes, and have important implications for further investigations on marsh plant growth and ecosystem functions.

Representing Plant Hydraulics in a Global Model: Updates to the Community Land Model

NASA Astrophysics Data System (ADS)

Kennedy, D.; Swenson, S. C.; Oleson, K. W.; Lawrence, D. M.; Fisher, R.; Gentine, P.

2017-12-01

In previous versions, the Community Land Model has used soil moisture to stand in for plant water status, with transpiration and photosynthesis driven directly by soil water potential. This eschews significant literature demonstrating the importance of plant hydraulic traits in the dynamics of water flow through the soil-plant-atmosphere continuum and in the regulation of stomatal aperture. In this study we install a simplified hydraulic framework to represent vegetation water potential and to regulate root water uptake and turbulent fluxes. Plant hydraulics allow for a more explicit representation of plant water status, which improves the physical basis for many processes represented in CLM. This includes root water uptake and the attenuation of photosynthesis and transpiration with drought. Model description is accompanied by results from a point simulation based at the Caxiuanã flux tower site in Eastern Amazonia, covering a throughfall exclusion experiment from 2001-2003. Including plant hydraulics improves the response to drought forcing compared to previous versions of CLM. Parameter sensitivity is examined at the same site and presented in the context of estimating hydraulic parameters in a global model.

Increased Electron-Accepting and Decreased Electron-Donating Capacities of Soil Humic Substances in Response to Increasing Temperature.

PubMed

Tan, Wenbing; Xi, Beidou; Wang, Guoan; Jiang, Jie; He, Xiaosong; Mao, Xuhui; Gao, Rutai; Huang, Caihong; Zhang, Hui; Li, Dan; Jia, Yufu; Yuan, Ying; Zhao, Xinyu

2017-03-21

The electron transfer capacities (ETCs) of soil humic substances (HSs) are linked to the type and abundance of redox-active functional moieties in their structure. Natural temperature can affect the chemical structure of natural organic matter by regulating their oxidative transformation and degradation in soil. However, it is unclear if there is a direct correlation between ETC of soil HS and mean annual temperature. In this study, we assess the response of the electron-accepting and -donating capacities (EAC and EDC) of soil HSs to temperature by analyzing HSs extracted from soil set along glacial-interglacial cycles through loess-palaeosol sequences and along natural temperature gradients through latitude and altitude transects. We show that the EAC and EDC of soil HSs increase and decrease, respectively, with increasing temperature. Increased temperature facilitates the prevalence of oxidative degradation and transformation of HS in soils, thus potentially promoting the preferentially oxidative degradation of phenol moieties of HS or the oxidative transformation of electron-donating phenol moieties to electron-accepting quinone moieties in the HS structure. Consequently, the EAC and EDC of HSs in soil increase and decrease, respectively. The results of this study could help to understand biogeochemical processes, wherein the redox functionality of soil organic matter is involved in the context of increasing temperature.

Climate change reduces the net sink of CH4 and N2O in a semiarid grassland

USDA-ARS?s Scientific Manuscript database

Methane (CH4) and nitrous oxide (N2O) are potent greenhouse gases; their concentrations in the atmosphere have increased because of human activity. Soils are important sources and sinks of both gases where their production and consumption are largely regulated by biological processes. Climate change...

Twelve testable hypotheses on the geobiology of weathering

Treesearch

S.L. Brantley; J.P. Megonigal; F.N. Scatena; Z. Balogh-Brunstad; R.T. Barnes; M.A. Bruns; P. van Cappelen; K. Dontsova; H.E. Hartnett; A.S. Hartshorn; A. Heimsath; E. Herndon; L. Jin; C.K. Keller; J.R. Leake; W.H. McDowell; F.C. Meinzer; T.J. Mozdzer; S. Petsch; J. Pett-Ridge; K.S. Pretziger; P.A. Raymond; C.S. Riebe; K. Shumaker; A. Sutton-Grier; R. Walter; K. Yoo

2011-01-01

Critical Zone (CZ) research investigates the chemical, physical, and biological processes that modulate the Earth's surface. Here, we advance 12 hypotheses that must be tested to improve our understanding of the CZ: (1) Solar-to-chemical conversion of energy by plants regulates flows of carbon, water, and nutrients through plant-microbe soil networks, thereby...

Coordinated Approaches to Quantify Long-Term Ecosystem dynamics in Response to Global Change

USDA-ARS?s Scientific Manuscript database

Climate change and its impact on ecosystems are usually assessed at decadal and century time scales. Ecological responses to climate change at those scales are strongly regulated by long-term processes, such as changes in species composition, carbon dynamics in soil and by big trees, and nutrient r...

Burning transformations: Fire history effects on organic matter processing from hillslopes to streams

NASA Astrophysics Data System (ADS)

Barnes, R. T.; Gilbertson, A.; Maxwell, K.

2017-12-01

Disturbance strongly regulates material and energy flows, changing ecosystem pattern and process. An increase in the size and severity of fire, particularly in the Intermountain West, over the last several decades is expected to continue due to a warming climate. Predicting how fire will alter the net ecosystem carbon balance requires us to understand how carbon is stored, processed, and transferred. Here we present results from paired watersheds focused on five 2002 severe fires in Colorado to examine how organic matter is processed along the hillslope and within the stream. Comparing soil samples and water extractable organic matter (WEOM) between burned and unburned sites illustrates the impact of fire: burned soils have 50% organic matter (OM) content as unburned soils, regardless of geomorphic position. While a smaller pool, soil OM (SOM) in burned sites is more susceptible to microbial degradation (p<0.001 for 4 of 6 sites), especially in systems with slower vegetative recovery. This is explained, in part, to the water extractable organic matter (WEOM) from unburned soils having a higher C:N than burned sites (p<0.02). This shift in SOM quality is likely due to differing OM inputs (e.g. grasses and forbes vs. trees in burned vs. unburned sites). Comparing results from intact soil column experiments to soil extractions and stream samples, suggests that the majority of this soil derived WEOM does not make it to the stream, potentially getting sorbed deeper in the mineral rich, organic poor, portion of the soil. Interestingly, the systematic shifts in OM amounts and quality (as measured by SUVA, E2:E3, and fluorescence) within the terrestrial system in response to fire, are not seen in stream exports. As such, while there are significant relationships (p<0.05) between stream DOM quality, DOM bioavailability, and stream metabolism, burned watersheds are not exporting DOM that is more bioavailable. In addition, despite different terrestrial OM pools, burned and unburned watersheds export statistically similar amounts of DOM per unit area, suggesting that a larger fraction of OM is transferred from the terrestrial to aquatic ecosystem within fire affected landscapes.

Modelling soil temperature and moisture and corresponding seasonality of photosynthesis and transpiration in a boreal spruce ecosystem

NASA Astrophysics Data System (ADS)

Wu, S. H.; Jansson, P.-E.

2012-05-01

Recovery of photosynthesis and transpiration is strongly restricted by low temperatures in air and/or soil during the transition period from winter to spring in boreal zones. The extent to which air temperature (Ta) and soil temperature (Ts) influence the seasonality of photosynthesis and transpiration of a boreal spruce ecosystem was investigated using a process-based ecosystem model (CoupModel) together with eddy covariance (EC) data from one eddy flux tower and nearby soil measurements at Knottåsen, Sweden. A Monte Carlo based uncertainty method (GLUE) provided prior and posterior distributions of simulations representing a wide range of soil conditions and performance indicators. The simulated results showed sufficient flexibility to predict the measured cold and warm Ts in the moist and dry plots around the eddy flux tower. Moreover, the model presented a general ability to describe both biotic and abiotic processes for the Norway spruce stand. The dynamics of sensible heat fluxes were well described the corresponding latent heat fluxes and net ecosystem exchange of CO2. The parameter ranges obtained are probably valid to represent regional characteristics of boreal conifer forests, but were not easy to constrain to a smaller range than that produced by the assumed prior distributions. Finally, neglecting the soil temperature response function resulted in fewer behavioural models and probably more compensatory errors in other response functions for regulating the seasonality of ecosystem fluxes.

Enzymology under global change: organic nitrogen turnover in alpine and sub-Arctic soils.

PubMed

Weedon, James T; Aerts, Rien; Kowalchuk, George A; van Bodegom, Peter M

2011-01-01

Understanding global change impacts on the globally important carbon storage in alpine, Arctic and sub-Arctic soils requires knowledge of the mechanisms underlying the balance between plant primary productivity and decomposition. Given that nitrogen availability limits both processes, understanding the response of the soil nitrogen cycle to shifts in temperature and other global change factors is crucial for predicting the fate of cold biome carbon stores. Measurements of soil enzyme activities at different positions of the nitrogen cycling network are an important tool for this purpose. We review a selection of studies that provide data on potential enzyme activities across natural, seasonal and experimental gradients in cold biomes. Responses of enzyme activities to increased nitrogen availability and temperature are diverse and seasonal dynamics are often larger than differences due to experimental treatments, suggesting that enzyme expression is regulated by a combination of interacting factors reflecting both nutrient supply and demand. The extrapolation from potential enzyme activities to prediction of elemental nitrogen fluxes under field conditions remains challenging. Progress in molecular '-omics' approaches may eventually facilitate deeper understanding of the links between soil microbial community structure and biogeochemical fluxes. In the meantime, accounting for effects of the soil spatial structure and in situ variations in pH and temperature, better mapping of the network of enzymatic processes and the identification of rate-limiting steps under different conditions should advance our ability to predict nitrogen fluxes.

Soil microbiology and soil health assessment

USDA-ARS?s Scientific Manuscript database

Soil scientists have long recognized the importance of soil biology in ecological health. In particular, soil microbes are crucial for many soil functions including decomposition, nutrient cycling, synthesis of plant growth regulators, and degradation of synthetic chemicals. Currently, soil biologis...

Relationships among net primary productivity, nutrients and climate in tropical rain forest: A pan-tropical analysis

USGS Publications Warehouse

Cleveland, Cory C.; Townsend, Alan R.; Taylor, Philip; Alvarez-Clare, Silvia; Bustamante, Mercedes M.C.; Chuyong, George; Dobrowski, Solomon Z.; Grierson, Pauline; Harms, Kyle E.; Houlton, Benjamin Z.; Marklein, Alison; Parton, William; Porder, Stephen; Reed, Sasha C.; Sierra, Carlos A.; Silver, Whendee L.; Tanner, Edmund V.J.; Wieder, William R.

2011-01-01

Tropical rain forests play a dominant role in global biosphere-atmosphere CO2 exchange. Although climate and nutrient availability regulate net primary production (NPP) and decomposition in all terrestrial ecosystems, the nature and extent of such controls in tropical forests remain poorly resolved. We conducted a meta-analysis of carbon-nutrient-climate relationships in 113 sites across the tropical forest biome. Our analyses showed that mean annual temperature was the strongest predictor of aboveground NPP (ANPP) across all tropical forests, but this relationship was driven by distinct temperature differences between upland and lowland forests. Within lowland forests (< 1000 m), a regression tree analysis revealed that foliar and soil-based measurements of phosphorus (P) were the only variables that explained a significant proportion of the variation in ANPP, although the relationships were weak. However, foliar P, foliar nitrogen (N), litter decomposition rate (k), soil N and soil respiration were all directly related with total surface (0–10 cm) soil P concentrations. Our analysis provides some evidence that P availability regulates NPP and other ecosystem processes in lowland tropical forests, but more importantly, underscores the need for a series of large-scale nutrient manipulations – especially in lowland forests – to elucidate the most important nutrient interactions and controls.

Evaluation of hydrologic equilibrium in a mountainous watershed: incorporating forest canopy spatial adjustment to soil biogeochemical processes

NASA Astrophysics Data System (ADS)

Mackay, D. Scott

Hydrologic equilibrium theory has been used to describe both short-term regulation of gas exchange and long-term adjustment of forest canopy density. However, by focusing on water and atmospheric conditions alone a hydrologic equilibrium may impose an oversimplification of the growth of forests adjusted to hydrology. In this study nitrogen is incorporated as a third regulation of catchment level forest dynamics and gas exchange. This was examined with an integrated distributed hydrology and forest growth model in a central Sierra Nevada watershed covered primarily by old-growth coniferous forest. Water and atmospheric conditions reasonably reproduced daily latent heat flux, and predicted the expected catenary trend of leaf area index (LAI). However, it was not until the model was provided a spatially detailed description of initial soil carbon and nitrogen pools that spatial patterns of LAI were generated. This latter problem was attributed to a lack of soil history or memory in the initialization of the simulations. Finally, by reducing stomatal sensitivity to vapor pressure deficit (VPD) the canopy density increased when water and nitrogen limitations were not present. The results support a three-control hydrologic equilibrium in the Sierra Nevada watershed. This has implications for modeling catchment level soil-vegetation-atmospheric interactions over interannual, decade, and century time-scales.

Ecotoxicogenomic assessment of diclofenac toxicity in soil.

PubMed

Chen, Guangquan; den Braver, Michiel W; van Gestel, Cornelis A M; van Straalen, Nico M; Roelofs, Dick

2015-04-01

Diclofenac is widely used as nonsteroidal anti-inflammatory drug leaving residues in the environment. To investigate effects on terrestrial ecosystems, we measured dissipation rate in soil and investigated ecotoxicological and transcriptome-wide responses in Folsomia candida. Exposure for 4 weeks to diclofenac reduced both survival and reproduction of F. candida in a dose-dependent manner. At concentrations ≥ 200 mg/kg soil diclofenac remained stable in the soil during a 21-day incubation period. Microarrays examined transcriptional changes at low and high diclofenac exposure concentrations. The results indicated that development and growth were severely hampered and immunity-related genes, mainly directed against bacteria and fungi, were significantly up-regulated. Furthermore, neural metabolic processes were significantly affected only at the high concentration. We conclude that diclofenac is toxic to non-target soil invertebrates, although its mode of action is different from the mammalian toxicity. The genetic markers proposed in this study may be promising early markers for diclofenac ecotoxicity. Copyright © 2015 Elsevier Ltd. All rights reserved.

Local environment of iron in garden soil Vs Plants

NASA Astrophysics Data System (ADS)

Dehipawala, Sunil; Dong, Chaojung; Smith, Stephen; Schneider, Patricia; Gafney, Harry

2015-03-01

Iron is an essential nutrient not only for humans, but also for all types of plants. Plants use iron for chlorophyll formation, RNA metabolism, and transpiration process regulation. Iron is one of the most abundant metals in the soil and occurs in a wide range of chemical forms. The correlation between the iron species presents in soil and in Petroselinum crispum (parsley) plants were investigated using the room temperature Mossbauer spectroscopy. Mossbauer spectrum of garden soil consists of two doublets. Based on the established isomer shift and quadrupole splitting values of iron, these doublets can be identified as due to octahedrally coordinated Fe3+ and tetrahedrally coordinated Fe2+. Most of the iron present in the parsley has the form Fe3+ or electron density at the site of the iron nucleus similar to that of Fe3+. These findings will help establish soil conditions necessary to increase Fe2+ intake by plants similar to the form of iron present in most supplements. Sunil Dehipawala acknowledges financial support provided by PSC-CUNY.

Super oxidation and solidification of organic solvents, polycyclic aromatic hydrocarbons and pesticides at an abandoned chemical factory site

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yao, Kevin; Xu, Paul; Loo, Walter

2013-07-01

Large quantities of organic chemical such as VOCs, SVOCs and POPs were found in the soil of land at an abandoned Chemical Plant. Technology of super oxidation was applied to the soil for cleanup. Fenton process was utilized to treat soil contaminated heavily by BHC, benzene, chlorobenzene, dichlorobenzene, hexachlorobenzene, dichloroethane, dichloropropane, trichlorobenzene and dichloroether, etc. Super oxidation was coupled with method of stabilization for this case to enhance the remediation effect, which proved to be successful. Concentration of concerned pollutants was brought down below the national regulation level by approximately 8 folds. To make the treated soil strong and effectivemore » layer preventing pollutants breaking through, Iron powder was mixed in the soil, forming PBR (Permeable Barrier Reactor), to lower the risk to human health. The site after enhanced super oxidation above was totally safe to be developed into a residential community and/or commercial area. (authors)« less

Low-concentration tailing and subsequent quicklime-enhanced remediation of volatile chlorinated hydrocarbon-contaminated soils by mechanical soil aeration.

PubMed

Ma, Yan; Du, Xiaoming; Shi, Yi; Xu, Zhu; Fang, Jidun; Li, Zheng; Li, Fasheng

2015-02-01

Mechanical soil aeration has long been regarded as an effective ex-situ remediation technique and as suitable for remediation of large-scale sites contaminated by volatile organic compounds (VOCs) at low cost. However, it has been reported that the removal efficiency of VOCs from soil is relatively low in the late stages of remediation, in association with tailing. Tailing may extend the remediation time required; moreover, it typically results in the presence of contaminants residues at levels far exceeding regulations. In this context, the present study aimed to discuss the tailing that occurs during the process of remediation of soils contaminated artificially with volatile chlorinated hydrocarbons (VCHs) and to assess possible quicklime-enhanced removal mechanisms. The results revealed the following conclusions. First, temperature and aeration rate can be important controls on both the timing of appearance of tailing and the levels of residual contaminants. Furthermore, the addition of quicklime to soil during tailing can reduce the residual concentrations rapidly to below the remedial target values required for site remediation. Finally, mechanical soil aeration can be enhanced using quicklime, which can improve the volatilization of VCHs via increasing soil temperature, reducing soil moisture, and enhancing soil permeability. Our findings give a basic understanding to the elimination of the tailing in the application of mechanical soil aeration, particularly for VOCs-contaminated soils. Copyright © 2014 Elsevier Ltd. All rights reserved.

Impact of understory vegetation on soil carbon and nitrogen dynamic in aerially seeded Pinus massoniana plantations.

PubMed

Pan, Ping; Zhao, Fang; Ning, Jinkui; Zhang, Ling; Ouyang, Xunzhi; Zang, Hao

2018-01-01

Understory vegetation plays a vital role in regulating soil carbon (C) and nitrogen (N) characteristics due to differences in plant functional traits. Different understory vegetation types have been reported following aerial seeding. While aerial seeding is common in areas with serious soil erosion, few studies have been conducted to investigate changes in soil C and N cycling as affected by understory vegetation in aerially seeded plantations. Here, we studied soil C and N characteristics under two naturally formed understory vegetation types (Dicranopteris and graminoid) in aerially seeded Pinus massoniana Lamb plantations. Across the two studied understory vegetation types, soil organic C was significantly correlated with all measured soil N variables, including total N, available N, microbial biomass N and water-soluble organic N, while microbial biomass C was correlated with all measured variables except soil organic C. Dicranopteris and graminoid differed in their effects on soil C and N process. Except water-soluble organic C, all the other C and N variables were higher in soils with graminoids. The higher levels of soil organic C, microbial biomass C, total N, available N, microbial biomass N and water-soluble organic N were consistent with the higher litter and root quality (C/N) of graminoid vegetation compared to Dicranopteris. Changes in soil C and N cycles might be impacted by understory vegetation types via differences in litter or root quality.

Impact of understory vegetation on soil carbon and nitrogen dynamic in aerially seeded Pinus massoniana plantations

PubMed Central

Pan, Ping; Zhao, Fang; Ning, Jinkui; Ouyang, Xunzhi; Zang, Hao

2018-01-01

Understory vegetation plays a vital role in regulating soil carbon (C) and nitrogen (N) characteristics due to differences in plant functional traits. Different understory vegetation types have been reported following aerial seeding. While aerial seeding is common in areas with serious soil erosion, few studies have been conducted to investigate changes in soil C and N cycling as affected by understory vegetation in aerially seeded plantations. Here, we studied soil C and N characteristics under two naturally formed understory vegetation types (Dicranopteris and graminoid) in aerially seeded Pinus massoniana Lamb plantations. Across the two studied understory vegetation types, soil organic C was significantly correlated with all measured soil N variables, including total N, available N, microbial biomass N and water-soluble organic N, while microbial biomass C was correlated with all measured variables except soil organic C. Dicranopteris and graminoid differed in their effects on soil C and N process. Except water-soluble organic C, all the other C and N variables were higher in soils with graminoids. The higher levels of soil organic C, microbial biomass C, total N, available N, microbial biomass N and water-soluble organic N were consistent with the higher litter and root quality (C/N) of graminoid vegetation compared to Dicranopteris. Changes in soil C and N cycles might be impacted by understory vegetation types via differences in litter or root quality. PMID:29377926

pH controls over methanogenesis and iron reduction along soil depth profile in Arctic tundra

NASA Astrophysics Data System (ADS)

Zheng, J.; Gu, B.; Wullschleger, S. D.; Graham, D. E.

2017-12-01

Increasing soil temperature in the Arctic is expected to accelerate rates of soil organic matter decomposition. However, the magnitude of this impact is uncertain due to the many physical, chemical, and biological processes that control the decomposition pathways. Varying soil redox conditions present a key control over pathways of organic matter decomposition by diverting the flow of reductants among different electron accepting processes and further driving acid-base reactions that alter soil pH. In this study we investigated the pH controls over anaerobic carbon mineralization, methanogenesis, Fe(III) reduction and the interplay between these processes across a range of pH and redox conditions. pH manipulation experiments were conducted by incubating soils representing organic, mineral, cryoturbated transitional layers and permafrost. In the experiments we sought to understand (1) if methanogenesis or Fe(III) reduction had similar pH optima; (2) if this pH response also occurs at `upstream' fermentation process; and (3) if pH alters organo-mineral association or organic matter sorption and desorption and its availability for microbial degradation. Our preliminary results suggest that the common bell-shaped pH response curve provides a good fit for both Fe(III) reduction and methanogenesis, with optimum pH at 6.0-7.0. Exceptions to this were found in transitional layer where methanogenesis rates positively correlated with increasing pH, with maximum rates measured at pH 8.5. It is likely that the transitional layer harbors distinct groups of methanogens that prefer a high pH. Variations in the optimum pH of Fe(III) reduction and methanogenesis may play a significant role in regulating organic matter decomposition pathways and thus greenhouse gas production in thawing soils. These results support biogeochemical modeling efforts to accurately simulate organic matter decomposition under changing redox and pH conditions.

Surficial redistribution of fallout 131iodine in a small temperate catchment

NASA Astrophysics Data System (ADS)

Landis, Joshua D.; Hamm, Nathan T.; Renshaw, Carl E.; Dade, W. Brian; Magilligan, Francis J.; Gartner, John D.

2012-03-01

Isotopes of iodine play significant environmental roles, including a limiting micronutrient (127I), an acute radiotoxin (131I), and a geochemical tracer (129I). But the cycling of iodine through terrestrial ecosystems is poorly understood, due to its complex environmental chemistry and low natural abundance. To better understand iodine transport and fate in a terrestrial ecosystem, we traced fallout 131iodine throughout a small temperate catchment following contamination by the 11 March 2011 failure of the Fukushima Daiichi nuclear power facility. We find that radioiodine fallout is actively and efficiently scavenged by the soil system, where it is continuously focused to surface soils over a period of weeks following deposition. Mobilization of historic (pre-Fukushima) 137cesium observed concurrently in these soils suggests that the focusing of iodine to surface soils may be biologically mediated. Atmospherically deposited iodine is subsequently redistributed from the soil system via fluvial processes in a manner analogous to that of the particle-reactive tracer 7beryllium, a consequence of the radionuclides' shared sorption affinity for fine, particulate organic matter. These processes of surficial redistribution create iodine hotspots in the terrestrial environment where fine, particulate organic matter accumulates, and in this manner regulate the delivery of iodine nutrients and toxins alike from small catchments to larger river systems, lakes and estuaries.

Surficial redistribution of fallout 131iodine in a small temperate catchment

PubMed Central

Landis, Joshua D.; Hamm, Nathan T.; Renshaw, Carl E.; Dade, W. Brian; Magilligan, Francis J.; Gartner, John D.

2012-01-01

Isotopes of iodine play significant environmental roles, including a limiting micronutrient (127I), an acute radiotoxin (131I), and a geochemical tracer (129I). But the cycling of iodine through terrestrial ecosystems is poorly understood, due to its complex environmental chemistry and low natural abundance. To better understand iodine transport and fate in a terrestrial ecosystem, we traced fallout 131iodine throughout a small temperate catchment following contamination by the 11 March 2011 failure of the Fukushima Daiichi nuclear power facility. We find that radioiodine fallout is actively and efficiently scavenged by the soil system, where it is continuously focused to surface soils over a period of weeks following deposition. Mobilization of historic (pre-Fukushima) 137cesium observed concurrently in these soils suggests that the focusing of iodine to surface soils may be biologically mediated. Atmospherically deposited iodine is subsequently redistributed from the soil system via fluvial processes in a manner analogous to that of the particle-reactive tracer 7beryllium, a consequence of the radionuclides’ shared sorption affinity for fine, particulate organic matter. These processes of surficial redistribution create iodine hotspots in the terrestrial environment where fine, particulate organic matter accumulates, and in this manner regulate the delivery of iodine nutrients and toxins alike from small catchments to larger river systems, lakes and estuaries. PMID:22378648

Sensitivity of stomatal conductance to soil moisture: implications for tropospheric ozone

NASA Astrophysics Data System (ADS)

Anav, Alessandro; Proietti, Chiara; Menut, Laurent; Carnicelli, Stefano; De Marco, Alessandra; Paoletti, Elena

2018-04-01

Soil moisture and water stress play a pivotal role in regulating stomatal behaviour of plants; however, in the last decade, the role of water availability has often been neglected in atmospheric chemistry modelling studies as well as in integrated risk assessments, despite the fact that plants remove a large amount of atmospheric compounds from the lower troposphere through stomata. The main aim of this study is to evaluate, within the chemistry transport model CHIMERE, the effect of soil water limitation on stomatal conductance and assess the resulting changes in atmospheric chemistry testing various hypotheses of water uptake by plants in the rooting zone. Results highlight how dry deposition significantly declines when soil moisture is used to regulate the stomatal opening, mainly in the semi-arid environments: in particular, over Europe the amount of ozone removed by dry deposition in one year without considering any soil water limitation to stomatal conductance is about 8.5 TgO3, while using a dynamic layer that ensures that plants maximize the water uptake from soil, we found a reduction of about 10 % in the amount of ozone removed by dry deposition ( ˜ 7.7 TgO3). Although dry deposition occurs from the top of canopy to ground level, it affects the concentration of gases remaining in the lower atmosphere, with a significant impact on ozone concentration (up to 4 ppb) extending from the surface to the upper troposphere (up to 650 hPa). Our results shed light on the importance of improving the parameterizations of processes occurring at plant level (i.e. from the soil to the canopy) as they have significant implications for concentration of gases in the lower troposphere and resulting risk assessments for vegetation or human health.

Soil water regulates the control of photosynthesis on diel hysteresis between soil respiration and temperature in a desert shrubland

NASA Astrophysics Data System (ADS)

Wang, Ben; Zha, Tian Shan; Jia, Xin; Gong, Jin Nan; Bourque, Charles; Feng, Wei; Tian, Yun; Wu, Bin; Qing Zhang, Yu; Peltola, Heli

2017-09-01

Explanations for the occurrence of hysteresis (asynchronicity) between diel soil respiration (Rs) and soil temperature (Ts) have evoked both biological and physical mechanisms. The specifics of these explanations, however, tend to vary with the particular ecosystem or biome being investigated. So far, the relative degree of control of biological and physical processes on hysteresis is not clear for drylands. This study examined the seasonal variation in diel hysteresis and its biological control in a desert-shrub ecosystem in northwest (NW) China. The study was based on continuous measurements of Rs, air temperature (Ta), temperature at the soil surface and below (Tsurf and Ts), volumetric soil water content (SWC), and photosynthesis in a dominant desert shrub (i.e., Artemisia ordosica) over an entire year in 2013. Trends in diel Rs were observed to vary with SWC over the growing season (April to October). Diel variations in Rs were more closely associated with variations in Tsurf than with photosynthesis as SWC increased, leading to Rs being in phase with Tsurf, particularly when SWC > 0.08 m3 m-3 (ratio of SWC to soil porosity = 0.26). However, as SWC decreased below 0.08 m3 m-3, diel variations in Rs were more closely related to variations in photosynthesis, leading to pronounced hysteresis between Rs and Tsurf. Incorporating photosynthesis into a Q10-function eliminated 84.2 % of the observed hysteresis, increasing the overall descriptive capability of the function. Our findings highlight a high degree of control by photosynthesis and SWC in regulating seasonal variation in diel hysteresis between Rs and temperature.

Boron transport in plants: co-ordinated regulation of transporters

PubMed Central

Miwa, Kyoko; Fujiwara, Toru

2010-01-01

Background The essentiality of boron (B) for plant growth was established >85 years ago. In the last decade, it has been revealed that one of the physiological roles of B is cross-linking the pectic polysaccharide rhamnogalacturonan II in primary cell walls. Borate cross-linking of pectic networks serves both for physical strength of cell walls and for cell adhesion. On the other hand, high concentrations of B are toxic to plant growth. To avoid deficiency and toxicity problems, it is important for plants to maintain their tissue B concentrations within an optimum range by regulating transport processes. Boron transport was long believed to be a passive, unregulated process, but the identification of B transporters has suggested that plants sense and respond to the B conditions and regulate transporters to maintain B homeostasis. Scope Transporters responsible for efficient B uptake by roots, xylem loading and B distribution among leaves have been described. These transporters are required under B limitation for efficient acquisition and utilization of B. Transporters important for tolerating high B levels in the environment have also been identified, and these transporters export B from roots back to the soil. Two types of transporters are involved in these processes: NIPs (nodulin-26-like intrinsic proteins), boric acid channels, and BORs, B exporters. It is demonstrated that the expression of genes encoding these transporters is finely regulated in response to B availability in the environment to ensure tissue B homeostasis. Furthermore, plants tolerant to stress produced by low B or high B in the environment can be generated through altered expression of these transporters. Conclusions The identification of the first B transporter led to the discovery that B transport was a process mediated not only by passive diffusion but also by transporters whose activity was regulated in response to B conditions. Now it is evident that plants sense internal and external B conditions and regulate B transport by modulating the expression and/or accumulation of these transporters. Results obtained in model plants are applicable to other plant species, and such knowledge may be useful in designing plants or crops tolerant to soils containing low or high B. PMID:20228086

The regulation by phenolic compounds of soil organic matter dynamics under a changing environment.

PubMed

Min, Kyungjin; Freeman, Chris; Kang, Hojeong; Choi, Sung-Uk

2015-01-01

Phenolics are the most abundant plant metabolites and are believed to decompose slowly in soils compared to other soil organic matter (SOM). Thus, they have often been considered as a slow carbon (C) pool in soil dynamics models. Here, however, we review changes in our concept about the turnover rate of phenolics and quantification of different types of phenolics in soils. Also, we synthesize current research on the degradation of phenolics and their regulatory effects on decomposition. Environmental changes, such as elevated CO2, warming, nitrogen (N) deposition, and drought, could influence the production and form of phenolics, leading to a change in SOM dynamics, and thus we also review the fate of phenolics under environmental disturbances. Finally, we propose the use of phenolics as a tool to control rates of SOM decomposition to stabilize organic carbon in ecosystems. Further studies to clarify the role of phenolics in SOM dynamics should include improving quantification methods, elucidating the relationship between phenolics and soil microorganisms, and determining the interactive effects of combinations of environmental changes on the phenolics production and degradation and subsequent impact on SOM processing.

Are patterns in nutrient limitation belowground consistent with those aboveground: Results from a 4 million year chronosequence

USGS Publications Warehouse

Reed, S.C.; Vitousek, P.M.; Cleveland, C.C.

2011-01-01

Accurately predicting the effects of global change on net carbon (C) exchange between terrestrial ecosystems and the atmosphere requires a more complete understanding of how nutrient availability regulates both plant growth and heterotrophic soil respiration. Models of soil development suggest that the nature of nutrient limitation changes over the course of ecosystem development, transitioning from nitrogen (N) limitation in 'young' sites to phosphorus (P) limitation in 'old' sites. However, previous research has focused primarily on plant responses to added nutrients, and the applicability of nutrient limitation-soil development models to belowground processes has not been thoroughly investigated. Here, we assessed the effects of nutrients on soil C cycling in three different forests that occupy a 4 million year substrate age chronosequence where tree growth is N limited at the youngest site, co-limited by N and P at the intermediate-aged site, and P limited at the oldest site. Our goal was to use short-term laboratory soil C manipulations (using 14C-labeled substrates) and longer-term intact soil core incubations to compare belowground responses to fertilization with aboveground patterns. When nutrients were applied with labile C (sucrose), patterns of microbial nutrient limitation were similar to plant patterns: microbial activity was limited more by N than by P in the young site, and P was more limiting than N in the old site. However, in the absence of C additions, increased respiration of native soil organic matter only occurred with simultaneous additions of N and P. Taken together, these data suggest that altered nutrient inputs into ecosystems could have dissimilar effects on C cycling above- and belowground, that nutrients may differentially affect of the fate of different soil C pools, and that future changes to the net C balance of terrestrial ecosystems will be partially regulated by soil nutrient status. ?? 2010 US Government.

Eco-Stoichiometric Alterations in Paddy Soil Ecosystem Driven by Phosphorus Application

PubMed Central

Li, Xia; Wang, Hang; Gan, ShaoHua; Jiang, DaQian; Tian, GuangMing; Zhang, ZhiJian

2013-01-01

Agricultural fertilization may change processes of elemental biogeochemical cycles and alter the ecological function. Ecoenzymatic stoichiometric feature plays a critical role in global soil carbon (C) metabolism, driving element cycles, and mediating atmospheric composition in response to agricultural nutrient management. Despite the importance on crop growth, the role of phosphorous (P) in compliance with eco-stoichiometry on soil C and nitrogen (N) sequestration in the paddy field remains poorly understood in the context of climate change. Here, we collected soil samples from a field experiment after 6 years of chemical P application at a gradient of 0 (P-0), 30 (P-30), 60 (P-60), and 90 (P-90) kg ha−1 in order to evaluate the role of P on stoichiometric properties in terms of soil chemical, microbial biomass, and eco-enzyme activities as well as greenhouse gas (GHG: CO2, N2O and CH4) emissions. Continuous P input increased soil total organic C and N by 1.3–9.2% and 3%–13%, respectively. P input induced C and N limitations as indicated by the decreased ratio of C:P and N:P in the soil and microbial biomass. A synergistic mechanism among the ecoenzymatic stoichiometry, which regulated the ecological function of microbial C and N acquisition and were stoichiometrically related to P input, stimulated soil C and N sequestration in the paddy field. The lower emissions of N2O and CH4 under the higher P application (P-60 and P-90) in July and the insignificant difference in N2O emission in August compared to P-30; however, continuous P input enhanced CO2 fluxes for both samplings. There is a technical conflict for simultaneously regulating three types of GHGs in terms of the eco-stoichiometry mechanism under P fertilization. Thus, it is recommended that the P input in paddy fields not exceed 60 kg ha−1 may maximize soil C sequestration, minimize P export, and guarantee grain yields. PMID:23667435

Thunder on the Yellowstone revisited: An assessment of management of native ungulates by natural regulation, 1968-1993

USGS Publications Warehouse

Singer, F.J.; Swift, D.M.; Coughenour, M.B.; Varley, J.D.

1998-01-01

Natural regulation of native ungulates was initiated in 1968 in Yellowstone National Park (YNP) based on the premise that ungulates would reach an equilibrium with their plant resources. The natural-regulation management model stated: density dependence will regulate ungulates (i.e., a dynamic equilibrium will result between ungulates and their food supply, within some bounds of vegetation and soil effects); and no retrogression of soil and vegetation will occur from elk (Cervus elaphus) grazing during this process. The historical record indicated that elk were abundant in the system and elk were primarily food limited before settlement by European man (i.e., wolves [Canis lupus] and Native Americans were only an adjunct to the density dependent population regulation of ungulates). Density dependence was demonstrated in elk, but not in bison (Bison bison). No widespread evidence of overgrazing was observed through 1993 in study sites within vegetation communities that comprised about 97% of the winter range. No evidence of increased exotics, increased sediment yield, warming or drying of the soil, changes in soil nutrients, or differences in aboveground standing-crop biomass of plants was found between grazed and ungrazed plots. Ungulate herbivory apparently stimulated aboveground production of grasses, enhanced nitrogen and macronutrients in grasses, increased nutrient cycling, and enhanced measures of fitness in 6 common plants. However, exposed soil surface (bare ground and pebbles combined) was 11-18% greater on grazed than ungrazed plots, apparently due to a 71% decline in dead and standing litter on grazed plots. Percent live-plant basal cover, however, did not differ on grazed versus ungrazed plots, and there was no difference in soil microclimate or sediment yield. Differences in the abundance of 12% of the herbaceous species were found in grazed versus ungrazed sites (16 of 128 species); 10 were declines and 6 were increases. Willow (Salix spp.) and aspen (Populus tremuloides) declines predated the new management policy, but their slow declines also continued after 1968. Three uncommon plant species (aspen, willow, and Wyoming big sagebrush [Artemisia tridentata tridentata]) and 1 herbivore (moose [Alces alces]) declined under natural-regulation management. Two uncommon species of woody browse (aspen, Wyoming big sagebrush) were overutilized by ungulates (consumption of >2/3 current annual growth occurred). We conclude the natural-regulation model for YNP was flawed in its assumptions of a single, steady state for the park, based on conditions presumed to exist in 1870 prior to establishment of the national park. The period selected as a standard (1870) was an unusual period characterized by frequent large fires and floods, common wolves, few elk, and a cooler, wetter climate. We also conclude there is a high level of uncertainty surrounding what elk densities were in pre-Columbian times (element 3 of the management model) and what effects wolves and Native Americans had in regulating the elk population.

Effect of Plant Growth Regulators on Phytoremediation of Hexachlorocyclohexane-Contaminated Soil.

PubMed

Chouychai, Waraporn; Kruatrachue, Maleeya; Lee, Hung

2015-01-01

The influence of three plant growth regulators, indolebutyric acid (IBA), thidiazuron (TDZ) and gibberellic acid (GA3), either individually or in pair-wise combinations, on the ability of waxy corn plant to remove hexachlorocyclohexane (HCH) from contaminated soil was studied. Waxy corn seeds were immersed for 3 h in solutions of 1.0 mg/l IBA, 0.01 mg/l TDZ, 0.1 mg/l GA3, or a mixture of two of the growth regulators, and then inoculated in soil contaminated with 46.8 mg/kg HCH for 30 days. Pretreatment of corn seeds with the plant growth regulators did not enhance corn growth when compared with those immersed in distilled water (control), but the pretreatment enhanced HCH removal significantly. On day 30, HCH concentration in the bulk soil planted with corn seeds pretreated with GA3 or TDZ+GA3 decreased by 97.4% and 98.4%, respectively. In comparison, HCH removal in soil planted with non-pretreated control waxy corn seeds was only 35.7%. The effect of several growth regulator application methods was tested with 0.01 mg/l TDZ. The results showed that none of the methods, which ranged from seed immersion, watering in soil, or spraying on shoots, affected HCH removal from soil. However, the method of applying the growth regulators may affect corn growth. Watering the corn plant with TDZ in soil led to higher root fresh weight (2.2 g) and higher root dried weight (0.57 g) than the other treatments (0.2-1.7 g root fresh weight and 0.02-0.43 g root dried weight) on day 30. Varying the concentrations of GA3 did not affect the enhancement of corn growth and HCH removal on day 30. The results showed that plant growth regulators may have potential for use to enhance HCH phytoremediation.

Mobilization of phenol and dichlorophenol in unsaturated soils by non-uniform electrokinetics.

PubMed

Luo, Qishi; Zhang, Xihui; Wang, Hui; Qian, Yi

2005-06-01

The poor mobility of organic pollutants in contaminated sites frequently results in slow remediation processes. Organics, especially hydrophobic compounds, are generally retained strongly in soil matrix as a result of sorption, sequestration, or even formation into non-aqueous-phase liquids and their mobility is thus greatly reduced. The objective of this study was to evaluate the feasibility of using non-uniform electrokinetic transport processes to enhance the mobility of organic pollutants in unsaturated soils with no injection reagents. Phenol and 2,4-dichlorophenol (2,4-DCP), and kaolin and a natural sandy loam soil were selected as model organics and soils, respectively. The results showed that non-uniform electrokinetics can accelerate the desorption and movement of phenol and 2,4-DCP in unsaturated soils. Electromigration and electroosmotic flow were the main driving forces, and their role in the mobilization of phenol and 2,4-DCP varied with soil pH. The movement of 2,4-DCP in the sandy loam towards the anode (about 1.0 cmd(-1)V(-1)) was 1.0-1.5 cmd(-1)V(-1) slower than that in the kaolin soil, but about 0.5 cmd(-1)V(-1) greater than that of phenol in the sandy loam. When the sandy loam was adjusted to pH 9.3, the movement of phenol and 2,4-DCP towards the anode was about twice and five times faster than that at pH 7.7, respectively. The results also demonstrated that the movement of phenol and 2,4-DCP in soils can be easily controlled by regulating the operational mode of electric field. It is believed that non-uniform electrokinetics has the potential for practical application to in situ remediation of organics-contaminated sites.

Long-term manure amendments reduced soil aggregate stability via redistribution of the glomalin-related soil protein in macroaggregates

PubMed Central

Xie, Hongtu; Li, Jianwei; Zhang, Bin; Wang, Lianfeng; Wang, Jingkuan; He, Hongbo; Zhang, Xudong

2015-01-01

Glomalin-related soil protein (GRSP) contributes to the formation and maintenance of soil aggregates, it is however remains unclear whether long-term intensive manure amendments alter soil aggregates stability and whether GRSP regulates these changes. Based on a three-decade long fertilization experiment in northeast China, this study examined the impact of long-term manure input on soil organic carbon (SOC), total and easily extractable GRSP (GRSPt and GRSPe) and their respective allocations in four soil aggregates (>2000 μm; 2000–250 μm; 250–53 μm; and <53 μm). The treatments include no fertilization (CK), low and high manure amendment (M1, M2), chemical nitrogen, phosphorus and potassium fertilizers (NPK), and combined manure and chemical fertilizers (NPKM1, NPKM2). Though SOC, GRSPe and GRSPt in soil and SOC in each aggregate generally increased with increasing manure input, GRSPt and GRSPe in each aggregate showed varying changes with manure input. Both GRSP in macroaggregates (2000–250 μm) were significantly higher under low manure input, a pattern consistent with changes in soil aggregate stability. Constituting 38~49% of soil mass, macroaggregates likely contributed to the nonlinear changes of aggregate stability under manure amendments. The regulatory process of GRSP allocations in soil aggregates has important implications for manure management under intensive agriculture. PMID:26423355

Aggregation and C dynamics along an elevation gradient in carbonate-containing grassland soils of the Alps

NASA Astrophysics Data System (ADS)

Garcia-Franco, Noelia; Wiesmeier, Martin; Kiese, Ralf; Dannenmann, Michael; Wolf, Benjamin; Zistl-Schlingmann, Marcus; Kögel-Knabner, Ingrid

2017-04-01

C sequestration in mountainous grassland soils is regulated by physical, chemical and biological soil process. An improved knowledge of the relationship between these stabilization mechanisms is decisive to recommend the best management practices for climate change mitigation. In this regard, the identification of a successful indicator of soil structural improvement and C sequestration in mountainous grassland soils is necessary. Alpine and pre-alpine grassland soils in Bavaria represent a good example for mountainous grassland soils faced with climate change. We sampled grassland soils of the northern limestone alps in Bavaria along an elevation gradient from 550 to 1300 m above sea level. We analyzed C dynamics by a comparative analysis of the distribution of C according to aggregate size classes: large-macroaggregates (> 2000 µm), small-macroaggregates (250-2000 µm), microaggregates (63-250 µm), silt plus clay particles (<63 µm) and bulk soil. Our preliminary results showed higher C content and changed water-stable aggregate distribution in the high elevation sites compared to lower elevations. Magnesium carbonate seem to play an important role in stabilizing macroaggregates formed from fresh OM. In addition, the isolation of occluded microaggregates within macroaggregates will help us to improve our understanding on the effects of climate change on soil structure and on the sensitivity of different C stabilization mechanisms present in mountainous soils.

Biogeochemical cycles and biodiversity as key drivers of ecosystem services provided by soils

NASA Astrophysics Data System (ADS)

Smith, P.; Cotrufo, M. F.; Rumpel, C.; Paustian, K.; Kuikman, P. J.; Elliott, J. A.; McDowell, R.; Griffiths, R. I.; Asakawa, S.; Bustamante, M.; House, J. I.; Sobocká, J.; Harper, R.; Pan, G.; West, P. C.; Gerber, J. S.; Clark, J. M.; Adhya, T.; Scholes, R. J.; Scholes, M. C.

2015-06-01

Soils play a pivotal role in major global biogeochemical cycles (carbon, nutrient and water), while hosting the largest diversity of organisms on land. Because of this, soils deliver fundamental ecosystem services, and management to change a soil process in support of one ecosystem service can either provide co-benefits to other services or can result in trade-offs. In this critical review, we report the state-of-the-art understanding concerning the biogeochemical cycles and biodiversity in soil, and relate these to the provisioning, regulating, supporting and cultural ecosystem services which they underpin. We then outline key knowledge gaps and research challenges, before providing recommendations for management activities to support the continued delivery of ecosystem services from soils. We conclude that although there are knowledge gaps that require further research, enough is known to start improving soils globally. The main challenge is in finding ways to share knowledge with soil managers and policy-makers, so that best-practice management can be implemented. A key element of this knowledge sharing must be in raising awareness of the multiple ecosystem services underpinned by soils, and the natural capital they provide. The International Year of Soils in 2015 presents the perfect opportunity to begin a step-change in how we harness scientific knowledge to bring about more sustainable use of soils for a secure global society.

Roots bridge water to nutrients: a study of utilizing hydraulic redistribution through root systems to extract nutrients in the dry soils

NASA Astrophysics Data System (ADS)

Yan, J.; Ghezzehei, T. A.

2017-12-01

The rhizosphere is the region of soil that surrounds by individual plant roots. While its small volume and narrow region compared to bulk soil, the rhizosphere regulates numerous processes that determine physical structure, nutrient distribution, and biodiversity of soils. One of the most important and distinct functions of the rhizosphere is the capacity of roots to bridge and redistribute soil water from wet soil layers to drier layers. This process was identified and defined as hydraulic lift or hydraulic redistribution, a passive process driven by gradients in water potentials and it has attracted much research attention due to its important role in global water circulation and agriculture security. However, while previous studies mostly focused on the hydrological or physiological impacts of hydraulic redistribution, limited research has been conducted to elucidate its role in nutrient cycling and uptake. In this study, we aim to test the possibility of utilizing hydraulic redistribution to facilitate the nutrient movement and uptake from resource segregated zone. Our overarching hypothesis is that plants can extract nutrients from the drier but nutrient-rich regions by supplying sufficient amounts of water from the wet but nutrient-deficient regions. To test our hypothesis, we designed split-root systems of tomatoes with unequal supply of water and nutrients in different root compartments. More specifically, we transplanted tomato seedlings into sand or soil mediums, and grew them under conditions with alternate 12-h lightness and darkness. We continuously monitored the temperature, water and nutrient content of soils in these separated compartments. The above and below ground biomass were also quantified to evaluate the impacts on the plant growth. The results were compared to a control with evenly supply of water and nutrients to assess the plant growth, nutrient leaching and uptake without hydraulic redistribution.

Modeling N Cycling during Succession after Forest Disturbance: an Analysis of N Mining and Retention Hypothesis

NASA Astrophysics Data System (ADS)

Zhou, Z.; Ollinger, S. V.; Ouimette, A.; Lovett, G. M.; Fuss, C. B.; Goodale, C. L.

2017-12-01

Dissolved inorganic nitrogen losses at the Hubbard Brook Experimental Forest (HBEF), New Hampshire, USA, have declined in recent decades, a pattern that counters expectations based on prevailing theory. An unbalanced ecosystem nitrogen (N) budget implies there is a missing component for N sink. Hypotheses to explain this discrepancy include increasing rates of denitrification and accumulation of N in mineral soil pools following N mining by plants. Here, we conducted a modeling analysis fused with field measurements of N cycling, specifically examining the hypothesis relevant to N mining and retention in mineral soils. We included simplified representations of both mechanisms, N mining and retention, in a revised ecosystem process model, PnET-SOM, to evaluate the dynamics of N cycling during succession after forest disturbance at the HBEF. The predicted N mining during the early succession was regulated by a metric representing a potential demand of extra soil N for large wood growth. The accumulation of nitrate in mineral soil pools was a function of the net aboveground biomass accumulation and soil N availability and parameterized based on field 15N tracer incubation data. The predicted patterns of forest N dynamics were consistent with observations. The addition of the new algorithms also improved the predicted DIN export in stream water with an R squared of 0.35 (P<0.01) aganist observations. Predicted mining processes had an average rate of 7.4 kgNha-1yr-1 and Predicted rates of N retention processes were 5.2 kgNha-1yr-1, both of which were in line with estimates only based on field data. The predicted trend of low DIN export could continue for another 70 years to pay back the mined N in mineral soils. Predicted ecosystem N balance showed that N gas loss could account for 14-46% of the total N deposition, the soil mining about 103% during the early succession, and soil retention about 35% at the current forest stage at the HBEF.

Combining position-specific 13C labeling with compound-specific isotope analysis: first steps towards soil fluxomics

NASA Astrophysics Data System (ADS)

Dippold, Michaela; Kuzyakov, Yakov

2015-04-01

Understanding the soil organic matter (SOM) dynamics is one of the most important challenges in soil science. Transformation of low molecular weight organic substances (LMWOS) is a key step in biogeochemical cycles because 1) all high molecular substances pass this stage during their decomposition and 2) only LMWOS will be taken up by microorganisms. Previous studies on LMWOS were focused on determining net fluxes through the LMWOS pool, but they rarely identified transformations. As LMWOS are the preferred C and energy source for microorganisms, the transformations of LMWOS are dominated by biochemical pathways of the soil microorganisms. Thus, understanding fluxes and transformations in soils requires a detailed knowledge on the biochemical pathways and its controlling factors. Tracing C fate in soil by isotopes became on of the most applied and promising biogeochemistry tools. Up to now, studies on LMWOS were nearly exclusively based on uniformly labeled organic substances i.e. all C atoms in the molecules were labeled with 13C or 14C. However, this classical approach did not allow the differentiation between use of intact initial substances in any process, or whether they were transformed to metabolites. The novel tool of position-specific labeling enables to trace molecule atoms separately and thus to determine the cleavage of molecules - a prerequisite for metabolic tracing. Position-specific labeling of LMWOS and quantification of 13CO2 and 13C in bulk soil enabled following the basic metabolic pathways of soil microorganisms. However, only the combination of position-specific 13C labeling with compound-specific isotope analysis of microbial biomarkers and metabolites allowed 1) tracing specific anabolic pathways in diverse microbial communities in soils and 2) identification of specific pathways of individual functional microbial groups. So, these are the prerequisites for soil fluxomics. Our studies combining position-specific labeled glucose with amino sugar 13C analysis showed that oxidizing catabolic pathways and anabolic pathways, i.e. building-up new cellular compounds, occurred in soils simultaneously. This involved an intensive C recycling within the microorganisms that was observed not only for cytosolic compounds but also for cell wall polymers. Fungal metabolism and fluxes were slower than bacterial intracellular C recycling and turnover. Furthermore, position-specific labeling of glutamate and subsequent 13C analysis of microbial phospholipid fatty acids (PLFA) revealed starvation pathways, which were only active in specific microbial groups in soils. These studies revealed that position-specific labeling enables the reconstruction of metabolic pathways of LMWOS within diverse microbial communities in complex media such as soil. Processes occurring simultaneously in soil i.e. 1) within individual, reversible metabolic pathways and 2) in various microbial groups could be traced by position-specific labeling in soils in situ. Tracing these pathways and understanding their regulating factors are crucial for soil C fluxomics, the extremely complex network of transformations towards mineralization versus the formation of microbial biomass compounds. Quantitative models to assess microbial group specific metabolic networks can be generated and parameterized by this approach. The submolecular knowledge of transformation steps and biochemical pathways in soils and their regulating factors is essential for understanding C cycling and long-term C storage in soils.

Untangle soil-water-mucilage interactions: 1H NMR Relaxometry is lifting the veil

NASA Astrophysics Data System (ADS)

Brax, Mathilde; Buchmann, Christian; Schaumann, Gabriele Ellen

2017-04-01

Mucilage is mainly produced at the root tips and has a high water holding capacity derived from highly hydrophilic gel-forming substances. The objective of the MUCILAGE project is to understand the mechanistic role of mucilage for the regulation of water supply for plants. Our subproject investigates the chemical and physical properties of mucilage as pure gel and mixed with soil. 1H-NMR Relaxometry and PFG NMR represent non-intrusive powerful methods for soil scientific research by allowing quantification of the water distribution as well as monitoring of the water mobility in soil pores and gel phases.Relaxation of gel water differs from the one of pure water due to additional interactions with the gel matrix. Mucilage in soil leads to a hierarchical pore structure, consisting of the polymeric biohydrogel network surrounded by the surface of soil particles. The two types of relaxation rates 1/T1 and 1/T2 measured with 1H-NMR relaxometry refer to different relaxation mechanisms of water, while PFG-NMR measures the water self-diffusion coefficient. The objective of our study is to distinguish in situ water in gel from pore water in a simplified soil system, and to determine how the "gel effect" affects both relaxation rates and the water self-diffusion coefficient in porous systems. We demonstrate how the mucilage concentration and the soil solution alter the properties of water in the respective gel phases and pore systems in model soils. To distinguish gel-inherent processes from classical processes, we investigated the variations of the water mobility in pure chia mucilage under different conditions by using 1H-NMR relaxometry and PFG NMR. Using model soils, the signals coming from pore water and gel water were differentiated. We combined the equations describing 1H-NMR relaxation in porous systems and our experimental results, to explain how the presence of gel in soil affects 1H-NMR relaxation. Out of this knowledge we propose a method, which determines in situ the presence of mucilage in soil and characterizes several gel-specific parameters of the mucilage. Based on these findings, we discussed the potential and limitations of 1H-NMR relaxometry for following natural swelling and shrinking processes of a natural biopolymer in soil.

Denitrification potential of riparian soils in relation to multiscale spatial environmental factors: a case study of a typical watershed, China.

PubMed

Wei, Jianbing; Feng, Hao; Cheng, Quanguo; Gao, Shiqian; Liu, Haiyan

2017-02-01

The objective of this study was to test the hypothesis that environmental regulators of riparian zone soil denitrification potential differ according to spatial scale within a watershed; consequently, a second objective was to provide spatial strategies for conserving and restoring the purification function of runoff in riparian ecosystems. The results show that soil denitrification in riparian zones was more heterogeneous at the profile scale than at the cross-section and landscape scales. At the profile scale, biogeochemical factors (including soil total organic carbon, total nitrogen, and nitrate-nitrogen) were the major direct regulators of the spatial distribution of soil denitrification enzyme activity (DEA). At the cross-section scale, factors included distance from river bank and vegetation density, while landscape-scale factors, including topographic index, elevation, and land use types, indirectly regulated the spatial distribution of DEA. At the profile scale, soil DEA was greatest in the upper soil layers. At the cross-section scale, maximum soil DEA occurred in the mid-part of the riparian zone. At the landscape scale, soil DEA showed an increasing trend towards downstream sites, except for those in urbanized areas.

Responses of soil microbial and nematode communities to aluminum toxicity in vegetated oil-shale-waste lands.

PubMed

Shao, Yuanhu; Zhang, Weixin; Liu, Zhanfeng; Sun, Yuxin; Chen, Dima; Wu, Jianping; Zhou, Lixia; Xia, Hanping; Neher, Deborah A; Fu, Shenglei

2012-11-01

Both soil nematodes and microorganisms have been shown to be sensitive bioindicators of soil recovery in metal-contaminated habitats; however, the underlying processes are poorly understood. We investigated the relationship among soil microbial community composition, nematode community structure and soil aluminum (Al) content in different vegetated aluminum-rich ecosystems. Our results demonstrated that there were greater soil bacterial, fungal and arbuscular mycorrhizal fungal biomass in Syzygium cumini plantation, greater abundance of soil nematodes in Acacia auriculiformis plantation, and greater abundance of soil predatory and herbivorous nematodes in Schima wallichii plantation. The concentration of water-soluble Al was normally greater in vegetated than non-vegetated soil. The residual Al and total Al concentrations showed a significant decrease after planting S. cumini plantation onto the shale dump. Acid extractable, reducible and oxidisable Al concentrations were greater in S. wallichii plantation. Stepwise linear regression analysis suggests the concentrations of water-soluble Al and total Al content explain the most variance associated with nematode assembly; whereas, the abundance of early-successional nematode taxa was explained mostly by soil moisture, soil organic C and total N rather than the concentrations of different forms of Al. In contrast, no significant main effects of either Al or soil physico-chemical characteristics on soil microbial biomass were observed. Our study suggests that vegetation was the primary driver on soil nematodes and microorganisms and it also could regulate the sensitivity of bio-indicator role mainly through the alteration of soil Al and physico-chemical characteristics, and S. cumini is effective for amending the Al contaminated soils.

Critical Zone Services as Environmental Assessment Criteria in Intensively Managed Agricultural Landscapes

NASA Astrophysics Data System (ADS)

Richardson, M.; Kumar, P.

2016-12-01

The critical zone (CZ) includes the biophysical processes occurring from the top of the vegetation canopy to the weathering zone below the groundwater table. CZ services provide a measure for the goods and benefits derived from CZ processes. In intensively managed landscapes (IML), the provisioning, supporting, and regulating services are altered through anthropogenic energy inputs to derive more productivity, as agricultural products, from these landscapes than would be possible under natural conditions. However, the energy or cost equivalents of alterations to CZ functions within landscape profiles are unknown. The valuation of CZ services in energy or monetary terms provides a more concrete tool for characterizing seemingly abstract environmental damages from agricultural production systems. A multi-layer canopy-root-soil model is combined with nutrient and water flux models to simulate the movement of nutrients throughout the soil system. This data enables the measurement of agricultural anthropogenic impacts to the CZ's nutrient cycling supporting services and atmospheric stabilizing regulating services defined by the flux of carbon and nutrients. Such measurements include soil carbon storage, soil carbon respiration, nitrate leaching, and nitrous oxide flux into the atmosphere. Additionally, the socioeconomic values of corn feed and ethanol define the primary productivity supporting services of each crop use.In the debate between feed production and corn-based ethanol production, measured nutrient CZ services can cost up to four times more than traditionally estimated CO2 equivalences for the entire bioenergy production system. Energy efficiency in addition to environmental impacts demonstrate how the inclusion of CZ services is necessary in accounting for the entire life cycle of agricultural production systems. These results conclude that feed production systems are more energy efficient and less environmentally costly than corn-based ethanol systems.

Modern Sorters for Soil Segregation on Large Scale Remediation Projects

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shonka, J.J.; Kelley, J.E.; O'Brien, J.M.

2008-01-15

In the mid-1940's, Dr. C. Lapointe developed a Geiger tube based uranium ore scanner and picker to replace hand-cobbing. In the 1990's, a modern version of the Lapointe Picker for soil sorting was developed around the need to clean the Johnston Atoll of plutonium. It worked well with sand, but these systems are ineffective with soil, especially with wet conditions. Additionally, several other constraints limited throughput. Slow moving belts and thin layers of material on the belt coupled with the use of multiple small detectors and small sorting gates make these systems ineffective for high throughput. Soil sorting of clay-bearingmore » soils and building debris requires a new look at both the material handling equipment, and the radiation detection methodology. A new class of Super-Sorters has attained throughput of one hundred times that of the old designs. Higher throughput means shorter schedules which reduce costs substantially. The planning, cost, implementation, and other site considerations for these new Super-Sorters are discussed. Modern soil segregation was developed by Ed Bramlitt of the Defense Nuclear Agency for clean up at Johnston Atoll. The process eventually became the Segmented Gate System (SGS). This system uses an array of small sodium iodide (NaI) detectors, each viewing a small volume (segment), that control a gate. The volume in the gate is approximately one kg. This system works well when the material to be processed is sand; however, when the material is wet and sticky (soils with clays) the system has difficulty moving the material through the gates. Super-Sorters are a new class of machine designed to take advantage of high throughput aggregate processing conveyors, large acquisition volumes, and large NaI detectors using gamma spectroscopy. By using commercially available material handling equipment, the system can attain processing rates of up to 400 metric tons/hr with spectrum acquisition approximately every 0.5 sec, so the acquisition volume is 50 kilograms or less. Smaller sorting volumes can be obtained with lower throughput or by re-sorting the diverted material. This equipment can also handle large objects. The use of spectroscopy systems allows several regions of- interest to be set. Super-Sorters can bring waste processing charges down to less than $30/ metric ton on smaller jobs and can save hundreds of dollars per metric ton in disposal charges. The largest effect on the overall project cost occurs during planning and implementation. The overall goal is reduction of the length of the project, which dictates the most efficient soil processing. With all sorting systems the parameters that need to be accounted for are matrix type, soil feed rate, soil pre-processing, site conditions, and regulatory issues. The soil matrix and its ability to flow are extremely crucial to operations. It is also important to consider that as conditions change (i.e., moisture), the flowability of the soil matrix will change. Many soil parameters have to be considered: cohesive strength, internal and wall friction, permeability, and bulk density as a function of consolidating pressure. Clay bearing soils have very low permeability and high cohesive strength which makes them difficult to process, especially when wet. Soil feed speed is dependent on the equipment present and the ability to move the soil in the Super-Sorter processing area. When a Super-Sorter is running at 400 metric tons per hour it is difficult to feed the system. As an example, front-end loaders with large buckets would move approximately 5-10 metric tons of material, and 400 metric tons per hour would require 50-100 bucket-loads per hour to attain. Because the flowability of the soil matrix is important, poor material is often pre-processed before it is added to the feed hopper of the 'survey' conveyor. This pre-processing can consist of a 'grizzly' to remove large objects from the soil matrix, followed screening plant to prepare the soil so that it feeds well. Hydrated lime can be added to improve material properties. Site conditions (site area, typical weather conditions, etc.) also play a large part in project planning. Downtime lengthens project schedule and costs. The system must be configured to handle weather conditions or other variables that affect throughput. The largest single factor that plays into the project design is the regulatory environment. Before a sorter can be utilized, an averaging mass must be established by the regulator(s). There currently are no standards or guidelines in this area. The differences between acquisition mass and averaging mass are very important. The acquisition mass is defined based on the acquisition time and the geometry of the detectors. The averaging mass can then be as small as the acquisition mass or as large as several hundred tons (the averaging mass is simply the sum of a number of acquisitions). It is important to define volumetric limits and any required point-source limits. Super-Sorters handle both of these types of limits simultaneously. The minimum detectable activity for Super- Sorters is a function of speed. The chart below illustrates the detection confidence level for a 0.1 {mu}Ci point source of Ra-226 vs alarm point for three different sorter process rates. The minimal detection activity and diversion volume for a Super-Sorter is also a function of the acquisition mass. The curves were collected using a 0-15 kg acquisition mass. Diversion volumes ranged from 20-30 kg for a point source diversion. Soil Super-Sorters should be considered for every D and D project where it is desirable to reduce the waste stream. A volume reduction of 1:1000 can be gained for each pass through a modern sorter, resulting in significant savings in disposal costs.« less

Soil functional types: surveying the biophysical dimensions of soil security

NASA Astrophysics Data System (ADS)

Cécillon, Lauric; Barré, Pierre

2015-04-01

Soil is a natural capital that can deliver key ecosystem services (ES) to humans through the realization of a series of soil processes controlling ecosystem functioning. Soil is also a diverse and endangered natural resource. A huge pedodiversity has been described at all scales, which is strongly altered by global change. The multidimensional concept soil security, encompassing biophysical, economic, social, policy and legal frameworks of soils has recently been proposed, recognizing the role of soils in global environmental sustainability challenges. The biophysical dimensions of soil security focus on the functionality of a given soil that can be viewed as the combination of its capability and its condition [1]. Indeed, all soils are not equal in term of functionality. They show different processes, provide different ES to humans and respond specifically to global change. Knowledge of soil functionality in space and time is thus a crucial step towards the achievement soil security. All soil classification systems incorporate some functional information, but soil taxonomy alone cannot fully describe the functioning, limitations, resistance and resilience of soils. Droogers and Bouma [2] introduced functional variants (phenoforms) for each soil type (genoform) so as to fit more closely to soil functionality. However, different genoforms can have the same functionality. As stated by McBratney and colleagues [1], there is a great need of an agreed methodology for defining the reference state of soil functionality. Here, we propose soil functional types (SFT) as a relevant classification system for the biophysical dimensions of soil security. Following the definition of plant functional types widely used in ecology, we define a soil functional type as "a set of soil taxons or phenoforms sharing similar processes (e.g. soil respiration), similar effects on ecosystem functioning (e.g. primary productivity) and similar responses to global change (land-use, management or climate) for a particular soil-provided ecosystem service (e.g. climate regulation)". One SFT can thus include several soil types having the same functionality for a particular soil-provided ES. Another consequence is that SFT maps for two different ES may not superimpose over the same area, since some soils may fall in the same SFT for a service and in different SFT for another one. Soil functional types could be assessed and monitored in space and time by a combination of soil functional traits that correspond to inherent and manageable properties of soils. Their metrology would involve either classic (pedological observations) or advanced (molecular ecology, spectrometry, geophysics) tools. SFT could be studied and mapped at all scales, depending on the purpose of the soil security assessment (e.g. global climate modeling, land planning and management, biodiversity conservation). Overall, research is needed to find a pathway from soil pedological maps to SFT maps which would yield important benefits towards the assessment and monitoring of soil security. Indeed, this methodology would allow (i) reducing the spatial uncertainty on the assessment of ES; (ii) identifying and mapping multifunctional soils, which may be the most important soil resource to preserve. References [1] McBratney et al., 2014. Geoderma 213:203-213. [2] Droogers P, Bouma J, 1997. SSSAJ 61:1704-1710.

Minimising toxicity of cadmium in plants--role of plant growth regulators.

PubMed

Asgher, Mohd; Khan, M Iqbal R; Anjum, Naser A; Khan, Nafees A

2015-03-01

A range of man-made activities promote the enrichment of world-wide agricultural soils with a myriad of chemical pollutants including cadmium (Cd). Owing to its significant toxic consequences in plants, Cd has been one of extensively studied metals. However, sustainable strategies for minimising Cd impacts in plants have been little explored. Plant growth regulators (PGRs) are known for their role in the regulation of numerous developmental processes. Among major PGRs, plant hormones (such as auxins, gibberellins, cytokinins, abscisic acid, jasmonic acid, ethylene and salicylic acid), nitric oxide (a gaseous signalling molecule), brassinosteroids (steroidal phytohormones) and polyamines (group of phytohormone-like aliphatic amine natural compounds with aliphatic nitrogen structure) have gained attention by agronomist and physiologist as a sustainable media to induce tolerance in abiotic-stressed plants. Considering recent literature, this paper: (a) overviews Cd status in soil and its toxicity in plants, (b) introduces major PGRs and overviews their signalling in Cd-exposed plants, (c) appraises mechanisms potentially involved in PGR-mediated enhanced plant tolerance to Cd and (d) highlights key aspects so far unexplored in the subject area.

Initial Soil Organic Matter Content Influences the Storage and Turnover of Litter-, Root- and Soil Carbon in Grasslands

NASA Astrophysics Data System (ADS)

Liu, L.; Xu, S.; Li, P.; Sayer, E. J.

2017-12-01

Grassland degradation is a worldwide problem that often leads to substantial loss of soil organic matter (SOM). Understanding how SOM content influences the stabilization of plant carbon (C) to form soil C is important to evaluate the potential of degraded grasslands to sequester additional C. We conducted a greenhouse experiment using C3 soils with six levels of SOM content and planted the C4 grass Cleistogenes squarrosa and/or added its litter to investigate how SOM content regulates the storage of new soil C derived from litter and roots, the decomposition of extant soil C, and the formation of soil aggregates. We found that microbial biomass carbon (MBC) increased with SOM content, and increased the mineralization of litter C. Both litter addition and planted treatments increased the amount of new C inputs to soil. However, litter addition had no significant impacts on the mineralization of extant soil C, but the presence of living roots significantly accelerated it. Thus, by the end of the experiment, soil C content was significantly higher in the litter addition treatments, but was not affected by planted treatments. The soil macroaggregate fraction increased with SOM content and was positively related to MBC. Overall, our study suggests that as SOM content increases, plant growth and soil microbes become more active, which allows microbes to process more plant-derived C and increases new soil C formation. The interactions between SOM content and plant C inputs should be considered when evaluating soil C turnover in degraded grasslands.

Networking our science to characterize the state, vulnerabilities, and management opportunities of soil organic matter

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harden, Jennifer W.; Hugelius, Gustaf; Ahlstrom, Anders

Here, soil organic matter supports the Earth’s ability to sustain terrestrial ecosystems, provide food and fiber, and retain the largest pool of actively cycling carbon (C). Over 75% of the soil organic carbon (SOC) in the top meter of soil is directly affected by human land use. Large land areas have lost SOC as a result of land use practices, yet there are compensatory opportunities to enhance land productivity and SOC storage in degraded lands through improved management practices. Large areas with and without intentional management are also being subjected to rapid changes in climate, making many SOC stocks vulnerablemore » to losses by decomposition or disturbance. In order to quantify potential SOC losses or sequestration at field, regional, and global scales, measurements for detecting changes in SOC are needed. Such measurements and soil-management best practices should be based on well-established and emerging scientific understanding of processes of C stabilization and destabilization over various timescales, soil types, and spatial scales. As newly engaged members of the International Soil Carbon Network, we have identified gaps in data, modeling, and communication that underscore the need for an open, shared network to frame and guide the study of soil organic matter and C and their management for sustained production and climate regulation.« less

Physicochemical Properties Influencing Presence of Burkholderia pseudomallei in Soil from Small Ruminant Farms in Peninsular Malaysia

PubMed Central

Panchadcharam, Chandrawathani; Zakaria, Zunita; Abdul Aziz, Saleha

2016-01-01

Soil is considered to be a major reservoir of Burkholderia pseudomallei in the environment. This paper investigates soil physicochemical properties that may influence presence of B. pseudomallei in soil samples from small ruminant farms in Peninsular Malaysia. Soil samples were collected from the farms and cultured for B. pseudomallei. The texture, organic matter and water contents, pH, elemental contents, cation exchange capacities, carbon, sulfur and nitrogen contents were determined. Analysis of soil samples that were positive and negative for B. pseudomallei using multivariable logistic regression found that the odds of bacterial isolation from soil was significantly higher for samples with higher contents of iron (OR = 1.01, 95%CI = 1.00–1.02, p = 0.03), water (OR = 1.28, 95%CI = 1.05–1.55, p = 0.01) and clay (OR = 1.54, 95%CI = 1.15–2.06, p = 0.004) compared to the odds of isolation in samples with lower contents of the above variables. These three factors may have favored the survival of B. pseudomallei because iron regulates expression of respiratory enzymes, while water is essential for soil ecology and agent’s biological processes and clay retains water and nutrients. PMID:27635652

Networking our science to characterize the state, vulnerabilities, and management opportunities of soil organic matter

DOE PAGES

Harden, Jennifer W.; Hugelius, Gustaf; Ahlstrom, Anders; ...

2017-10-05

Here, soil organic matter supports the Earth’s ability to sustain terrestrial ecosystems, provide food and fiber, and retain the largest pool of actively cycling carbon (C). Over 75% of the soil organic carbon (SOC) in the top meter of soil is directly affected by human land use. Large land areas have lost SOC as a result of land use practices, yet there are compensatory opportunities to enhance land productivity and SOC storage in degraded lands through improved management practices. Large areas with and without intentional management are also being subjected to rapid changes in climate, making many SOC stocks vulnerablemore » to losses by decomposition or disturbance. In order to quantify potential SOC losses or sequestration at field, regional, and global scales, measurements for detecting changes in SOC are needed. Such measurements and soil-management best practices should be based on well-established and emerging scientific understanding of processes of C stabilization and destabilization over various timescales, soil types, and spatial scales. As newly engaged members of the International Soil Carbon Network, we have identified gaps in data, modeling, and communication that underscore the need for an open, shared network to frame and guide the study of soil organic matter and C and their management for sustained production and climate regulation.« less

A Lipid Extraction and Analysis Method for Characterizing Soil Microbes in Experiments with Many Samples

PubMed Central

Oates, Lawrence G.; Read, Harry W.; Gutknecht, Jessica L. M.; Duncan, David S.; Balser, Teri B.; Jackson, Randall D.

2017-01-01

Microbial communities are important drivers and regulators of ecosystem processes. To understand how management of ecosystems may affect microbial communities, a relatively precise but effort-intensive technique to assay microbial community composition is phospholipid fatty acid (PLFA) analysis. PLFA was developed to analyze phospholipid biomarkers, which can be used as indicators of microbial biomass and the composition of broad functional groups of fungi and bacteria. It has commonly been used to compare soils under alternative plant communities, ecology, and management regimes. The PLFA method has been shown to be sensitive to detecting shifts in microbial community composition. An alternative method, fatty acid methyl ester extraction and analysis (MIDI-FA) was developed for rapid extraction of total lipids, without separation of the phospholipid fraction, from pure cultures as a microbial identification technique. This method is rapid but is less suited for soil samples because it lacks an initial step separating soil particles and begins instead with a saponification reaction that likely produces artifacts from the background organic matter in the soil. This article describes a method that increases throughput while balancing effort and accuracy for extraction of lipids from the cell membranes of microorganisms for use in characterizing both total lipids and the relative abundance of indicator lipids to determine soil microbial community structure in studies with many samples. The method combines the accuracy achieved through PLFA profiling by extracting and concentrating soil lipids as a first step, and a reduction in effort by saponifying the organic material extracted and processing with the MIDI-FA method as a second step. PMID:28745639

Evapotranspiration: A process driving mass transport and energy exchange in the soil-plant-atmosphere-climate system

NASA Astrophysics Data System (ADS)

Katul, Gabriel G.; Oren, Ram; Manzoni, Stefano; Higgins, Chad; Parlange, Marc B.

2012-09-01

The role of evapotranspiration (ET) in the global, continental, regional, and local water cycles is reviewed. Elevated atmospheric CO2, air temperature, vapor pressure deficit (D), turbulent transport, radiative transfer, and reduced soil moisture all impact biotic and abiotic processes controlling ET that must be extrapolated to large scales. Suggesting a blueprint to achieve this link is the main compass of this review. Leaf-scale transpiration (fe) as governed by the plant biochemical demand for CO2 is first considered. When this biochemical demand is combined with mass transfer formulations, the problem remains mathematically intractable, requiring additional assumptions. A mathematical "closure" that assumes stomatal aperture is autonomously regulated so as to maximize the leaf carbon gain while minimizing water loss is proposed, which leads to analytical expressions for leaf-scale transpiration. This formulation predicts well the effects of elevated atmospheric CO2 and increases in D on fe. The case of soil moisture stress is then considered using extensive gas exchange measurements collected in drought studies. Upscaling the fe to the canopy is then discussed at multiple time scales. The impact of limited soil water availability within the rooting zone on the upscaled ET as well as some plant strategies to cope with prolonged soil moisture stress are briefly presented. Moving further up in direction and scale, the soil-plant system is then embedded within the atmospheric boundary layer, where the influence of soil moisture on rainfall is outlined. The review concludes by discussing outstanding challenges and how to tackle them by means of novel theoretical, numerical, and experimental approaches.

Modelling soil temperature and moisture and corresponding seasonality of photosynthesis and transpiration in a boreal spruce ecosystem

NASA Astrophysics Data System (ADS)

Wu, S. H.; Jansson, P.-E.

2013-02-01

Recovery of photosynthesis and transpiration is strongly restricted by low temperatures in air and/or soil during the transition period from winter to spring in boreal zones. The extent to which air temperature (Ta) and soil temperature (Ts) influence the seasonality of photosynthesis and transpiration of a boreal spruce ecosystem was investigated using a process-based ecosystem model (CoupModel) together with eddy covariance (EC) data from one eddy flux tower and nearby soil measurements at Knottåsen, Sweden. A Monte Carlo-based uncertainty method (GLUE) provided prior and posterior distributions of simulations representing a wide range of soil conditions and performance indicators. The simulated results showed sufficient flexibility to predict the measured cold and warm Ts in the moist and dry plots around the eddy flux tower. Moreover, the model presented a general ability to describe both biotic and abiotic processes for the Norway spruce stand. The dynamics of sensible heat fluxes were well described by the corresponding latent heat fluxes and net ecosystem exchange of CO2. The parameter ranges obtained are probably valid to represent regional characteristics of boreal conifer forests, but were not easy to constrain to a smaller range than that produced by the assumed prior distributions. Finally, neglecting the soil temperature response function resulted in fewer behavioural models and probably more compensatory errors in other response functions for regulating the seasonality of ecosystem fluxes.

Assimilation of Satellite-Derived Precipitation into the Regional Atmospheric Model System (RAMS): Its Impacts on the Weather and Hydrology in the Southwest United States

NASA Astrophysics Data System (ADS)

Yi, H.; Gao, X.; Sorooshian, S.

2002-05-01

As one aspect of the study of interactions between the atmosphere, vegetation, soil, and hydrology, there has been on going efforts to assimilate soil moisture data using coupled and uncoupled land surface-atmosphere hydrology models. The assimilation of soil moisture is expected to have influence due to its vital function in regulating runoff, partitioning latent and sensible heat, and through determining groundwater recharge. Soil moisture can provides long-term memory or persistence of the surface boundary condition, influencing large-scale atmospheric circulation over subsequent intervals. Now that the application of satellite remote sensing has become obvious to provide input parameters associated with land surface processes to the numerical models, this study utilizes remotely sensed precipitation data, PERSIANN (Precipitation Estimation from Remotely Sensed Information using Artificial Neural Networks) to assimilate soil moisture and other soil surface characteristics. Compared to the other earlier modeling experiments of seasonal or interannual temporal scale in continental or global spatial scale, this study investigates short term predictability in regional scale with the southwest United States as a study area, which has unique metrological and geographical features that provide special difficulties for mesoscale modeling. Research objectives are to assimilate the PERSIANN precipitation data into the mesoscale model for model initialization, examine the influence and memory of model precipitation errors on the land surface and atmospheric processes, and thereby study the short term predictability of meteorology and hydrology in the Southwest United States.

Treeline biogeochemistry and dynamics, Noatak National Preserve, northwestern Alaska: A section in Studies by the U.S. Geological Survey in Alaska, 2000

USGS Publications Warehouse

Stottlemyer, Robert; Binkley, Dan; Steltzer, Heidi; Wilson, Frederic H.; Galloway, John P.

2002-01-01

The extensive boreal biome is little studies relative to its global importance. Its high soil moisture and low temperatures result in large below-ground reservoirs of carbon (C) and nitrogen (N). Presently, such high-latitude ecosystems are undergoing the largest temperature increases in global warming. Change in soil temperature or moisture in the large pools of soil organic matter could fundamentally change ecosystem C and N budgets. Since 1990, we have conducted treeline studies in a small (800 ha) watershed in Noatak National Preserve, northwestern Alaska. Our objectives were to (1) gain an understanding of treeline dynamics, structure, and function; and (2) examine the effects of global climate change, particularly soil temperature, moisture, and N availability, on ecosystem processes. Our intensive site studies show that the treeline has advanced into turdra during the past 150 years. Inplace and laboratory incubations indicate that soil organic-layer mineralization rates increase with a temperature change >5 degrees C. N availability was greatest in soils beneath alder and lowest beneath willow or cottongrass tussocks. Watershed output of inorganic N as NO3 was 70 percent greater than input. The high inorganic-N output likely reflects soil freeze-thaw cycles, shallow flowpaths to the stream, and low seasonal biological retention. Concentrations and flux of dissolved organic carbon (DOC) in streamwater increased during spring melt and in autumn, indicating a seasonal accumulation of soil and forest-floor DOC and a shallower flowpath for meltwater to the stream. In sum, our research suggests that treeling transitionzone processes are quite sensitive to climate change, especially those functions regulating the C and N cycles.

Scenarios reveal pathways to sustain future ecosystem services in an agricultural landscape.

PubMed

Qiu, Jiangxiao; Carpenter, Stephen R; Booth, Eric G; Motew, Melissa; Zipper, Samuel C; Kucharik, Christopher J; Chen, Xi; Loheide, Steven P; Seifert, Jenny; Turner, Monica G

2018-01-01

Sustaining food production, water quality, soil retention, flood, and climate regulation in agricultural landscapes is a pressing global challenge given accelerating environmental changes. Scenarios are stories about plausible futures, and scenarios can be integrated with biophysical simulation models to explore quantitatively how the future might unfold. However, few studies have incorporated a wide range of drivers (e.g., climate, land-use, management, population, human diet) in spatially explicit, process-based models to investigate spatial-temporal dynamics and relationships of a portfolio of ecosystem services. Here, we simulated nine ecosystem services (three provisioning and six regulating services) at 220 × 220 m from 2010 to 2070 under four contrasting scenarios in the 1,345-km 2 Yahara Watershed (Wisconsin, USA) using Agro-IBIS, a dynamic model of terrestrial ecosystem processes, biogeochemistry, water, and energy balance. We asked (1) How does ecosystem service supply vary among alternative future scenarios? (2) Where on the landscape is the provision of ecosystem services most susceptible to future social-ecological changes? (3) Among alternative future scenarios, are relationships (i.e., trade-offs, synergies) among food production, water, and biogeochemical services consistent over time? Our results showed that food production varied substantially with future land-use choices and management, and its trade-offs with water quality and soil retention persisted under most scenarios. However, pathways to mitigate or even reverse such trade-offs through technological advances and sustainable agricultural practices were apparent. Consistent relationships among regulating services were identified across scenarios (e.g., trade-offs of freshwater supply vs. flood and climate regulation, and synergies among water quality, soil retention, and climate regulation), suggesting opportunities and challenges to sustaining these services. In particular, proactive land-use changes and management may buffer water quality against undesirable future climate changes, but changing climate may overwhelm management efforts to sustain freshwater supply and flood regulation. Spatially, changes in ecosystem services were heterogeneous across the landscape, underscoring the power of local actions and fine-scale management. Our research highlights the value of embracing spatial and temporal perspectives in managing ecosystem services and their complex interactions, and provides a system-level understanding for achieving sustainability of the food-water-climate nexus in agricultural landscapes. © 2017 by the Ecological Society of America.

Spatial variation in microbial processes controlling carbon mineralization within soils and sediments

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fendorf, Scott; Kleber, Markus; Nico, Peter

Soils have a defining role in global carbon cycling, having one of the largest dynamic stocks of C on earth—3300 Pg of C are stored in soils, which is three-times the amount stored in the atmosphere and more than the terrestrial land plants. An important control on soil organic matter (SOM) quantities is the mineralization rate. It is well recognized that the rate and extent of SOM mineralization is affected by climatic factors and mineral-organic matter associations. What remained elusive is to what extent constraints on microbial metabolism induced by the respiratory pathway, and specifically the electron acceptor in respiration,more » control overall rates of carbon mineralization in soils. Therefore, physical factors limiting oxygen diffusion such as soil texture and aggregate size (soil structure) may therefore be central controls on C mineralization rates. The goal of our research was therefore to determine if variations in microbial metabolic rates induced by anaerobic microsites in soils are a major control on SOM mineralization rates and thus storage. We performed a combination of laboratory experiments and field investigations will be performed to fulfill our research objectives. We used laboratory studies to examine fundamental factors of respiratory constraints (i.e., electron acceptor) on organic matter mineralization rates. We ground our laboratory studies with both manipulation of field samples and in-field measurements. Selection of the field sites is guided by variation in soil texture and structure while having (other environmental/soil factors constant. Our laboratory studies defined redox gradients and variations in microbial metabolism operating at the aggregate-scale (cm-scale) within soils using a novel constructed diffusion reactor. We further examined micro-scale variation in terminal electron accepting processes and resulting C mineralization rates within re-packed soils. A major outcome of our research is the ability to quantitatively place the importance of aggregate-based heterogeneity in microbial redox processes and the resulting lack of oxygen on the rate of carbon mineralization. Collectively, our research shows that anaerobic microsites are prevalent in soils and are important regulators of soil carbon persistence, shifting microbial metabolism to less efficient anaerobic respiration and selectively protecting otherwise bioavailable, reduced organic compounds such as lipids and waxes from decomposition. Further, shifting from anaerobic to aerobic conditions leads to a 10-fold increase in volume-specific mineralization rate, illustrating the sensitivity of anaerobically protected carbon to disturbance. Vulnerability of anaerobically protected carbon to future climate or land use change thus constitutes a yet unrecognized soil carbon-climate feedback that should be incorporated into terrestrial ecosystem models.« less

Role of soil biology and soil functions in relation to land use intensity.

NASA Astrophysics Data System (ADS)

Bondi, Giulia; Wall, David; Bacher, Matthias; Emmet-Booth, Jeremy; Graça, Jessica; Marongiu, Irene; Creamer, Rachel

2017-04-01

The delivery of the ecosystem's functions is predominantly controlled by soil biology. The biology found in a gram of soil contains more than ten thousand individual species of bacteria and fungi (Torsvik et al., 1990). Understanding the role and the requirements of these organisms is essential for the protection and the sustainable use of soils. Soil biology represents the engine of all the processes occurring in the soil and it supports the ecosystem services such as: 1) nutrient mineralisation 2) plant production 3) water purification and regulation and 4) carbon cycling and storage. During the last years land management type and intensity have been identified as major drivers for microbial performance in soil. For this reason land management needs to be appropriately studied to understand the role of soil biology within this complex interplay of functions. We aimed to study whether and how land management drives soil biological processes and related functions. To reach this objective we built a land use intensity index (LUI) able to quantify the impact of the common farming practices carried out in Irish grassland soils. The LUI is derived from a detailed farmer questionnaire on grassland management practices at 38 farms distributed in the five major agro-climatic regions of Ireland defined by Holden and Brereton (2004). Soils were classified based on their drainage status according to the Irish Soil Information System by Creamer et al. (2014). This detailed questionnaire is then summarised into 3 management intensity components: (i) intensity of Fertilisation (Fi), (ii) frequency of Mowing (Mi) and (iii) intensity of Livestock Grazing (Gi). Sites were sampled to assess the impact of land management intensity on microbial community structure and enzyme behaviour in relation to nitrogen, phosphorus and carbon cycling. Preliminary results for enzymes linked to C and N cycles showed higher activity in relation to low grazing pressure (low Gi). Enzymes linked to P and S cycles showed higher activity in relation to higher fertilizer application (high Fi). However, microbial biomass did not show a strong correlation with the three components of the LUI. Plant and microbial community are currently being assessed to investigate deeply the impact of land management on the overall soil biological processes. The results indicate that the proposed index is an efficient tool to identify the impact of land use on the ecological processes. Creamer, R.E., et al. (2014). Irish Soil Infomation Synthesis Report (2007-S-CD-1-S1). http://gis.teagasc.ie/soils/downloads/EPA_RR130_PRINT.pdf Holden, N. and Brereton, A.J., (2004). Definition of agroclimatic regions in Ireland using hydro-thermal and crop yield data. Agricultural and Forest Meteorology 122: 175 - 191. Torsvik, V., et al. (1990). Comparison of phenotypic diversity and DNA heterogeneity in a population of soil bacteria. Applied and Environmental Microbiology 56.3 776-781.

Study on the Strategies for the Soil and Water Resource Con-servation of Slopeland in Taiwan in Response to the Extreme Climate

NASA Astrophysics Data System (ADS)

Huang, Wen-Cheng

2014-05-01

Global climate change results in extreme weather, especially ex-treme precipitation in Taiwan. Though the total amount of precipi-tation remains unchanged, the frequency of rainfall return period increases which affects slopeland and causes sediment disaster. In Taiwan, slopeland occupies about 73% of national territory. Under harsh environmental stress, soil and water conservation of slope-land becomes more important. In response to the trends of global-ization impacts of climate change, long term strategic planning be-comes more necessary. This study reviewed international practices and decision making process about soil and water conservation of slopeland; and conducted the compilation and analysis of water and soil conservation related research projects in Taiwan within the past five years. It is necessary for Taiwan to design timely adaptive strategies about conducting the all-inclusive conservation of na-tional territory, management and business operation of watershed based on the existing regulation with the effects of extreme weather induced by climate change and the changes of social-economic en-vironments. In order to realize the policy vision of "Under the premise of multiple uses, operating the sustainable business and management of the water and soil resources in the watershed through territorial planning in response to the climate and so-cial-economic environment change". This study concluded the future tasks for soil and water con-servation: 1.Design and timely amend strategies for soil and wand water conservation in response to extreme weather. 2. Strengthen the planning and operating of the land management and integrated conservation of the water and soil resources of key watershed. 3. Manage and operate the prevention of debris flow disaster and large-scale landslide. 4. Formulate polices, related regulations and assessment indicators of soil and water conservation. 5. Maintain the biodiversity of the slopeland and reduce the ecological footprint. 6. Conduct soil and water conservation research according to the importance and urgency of policies. 7. Implement the international cooperation, technology communication, talent cultivation, and integrated education and promotion.

Fuel regulation in inland navigation: reduced soil black carbon and PAH deposition in river valleys

NASA Astrophysics Data System (ADS)

Bläsing, M.; Schwark, L.; Amelung, W.; Lehndorff, E.

2016-12-01

Inland navigation (IN) is of increasing importance in the transport sector. Most inland waterways and inland ports are located in/near urban regions; hence many people are exposed to emissions from IN. However, its contribution to environmental quality is not yet known. Accordingly, we aimed at identifying IN emissions in the environment, and investigating consequences of the S-reduction in ship diesel (EU regulation 2009/30/EC) on IN emissions. To do so, topsoil samples were taken from vineyards in valley transects (perpendicular to rivers) at two German inland waterways (Rhine, Moselle) and one ship-free reference valley (Ahr) and analyzed for polycyclic aromatic hydrocarbons (PAHs) and black carbon (BC). To elucidate the effect of fuel regulation (effective since 2011), samplings were performed from 2010 to 2013. Additionally, the potential dispersal of IN emissions was simulated by a Lagrangian stochastic model. Before regulating the S-content of ship diesel by the EU directive soil samples indicated a clear impact of IN emissions on BC and PAH deposits, in at least 200 and 350 m distance to the Moselle and Rhine river, respectively. IN emissions accounted for approximately 30% of total soil BC. However, soils along waterways comprised only slightly more BC than soils in the ship-free Ahr Valley, with BC contents comparable to rural to suburban European soils. Contents of PAHs in river valleys compared to remote to urban pollution load. In the course of the fuel regulation, BC and PAH deposits in soil were reduced within three years by 30-60%, respectively. Also the quality of emissions changed to higher shares of low molecular weight PAHs and smaller proportions of soot-BC, indicating less deposition of IN emissions. The impact of the fuel regulation was more obvious at the Rhine Valley than at the Moselle Valley, likely because of higher ship traffic volume at the former. Overall, fuel regulation was effective in reducing IN emissions along inland waterways.

Monitoring boreal ecosystem phenology with integrated active/passive microwave remote sensing

NASA Technical Reports Server (NTRS)

McDonald, K. C.; Njoku, E.; Kimball, J.; Running, S.; Thompson, C.; Lee, J. K.

2002-01-01

The important role of the high latitudes in the functioning of global processes is becoming well established. The size and remoteness of arctic and boreal ecosystems, however, pose a challenge to quantification of both terrestrial ecosystem processes and their feedbacks to regional and global climate conditions. Boreal and arctic regions form a complex land cover mosaic where vegetation structure, condition and distribution are strongly regulated by environmental factors such as moisture availability, permafrost, growing season length, disturbance and soil nutrients.

Belowground Microbiota and the Health of Tree Crops.

PubMed

Mercado-Blanco, Jesús; Abrantes, Isabel; Barra Caracciolo, Anna; Bevivino, Annamaria; Ciancio, Aurelio; Grenni, Paola; Hrynkiewicz, Katarzyna; Kredics, László; Proença, Diogo N

2018-01-01

Trees are crucial for sustaining life on our planet. Forests and land devoted to tree crops do not only supply essential edible products to humans and animals, but also additional goods such as paper or wood. They also prevent soil erosion, support microbial, animal, and plant biodiversity, play key roles in nutrient and water cycling processes, and mitigate the effects of climate change acting as carbon dioxide sinks. Hence, the health of forests and tree cropping systems is of particular significance. In particular, soil/rhizosphere/root-associated microbial communities (known as microbiota) are decisive to sustain the fitness, development, and productivity of trees. These benefits rely on processes aiming to enhance nutrient assimilation efficiency (plant growth promotion) and/or to protect against a number of (a)biotic constraints. Moreover, specific members of the microbial communities associated with perennial tree crops interact with soil invertebrate food webs, underpinning many density regulation mechanisms. This review discusses belowground microbiota interactions influencing the growth of tree crops. The study of tree-(micro)organism interactions taking place at the belowground level is crucial to understand how they contribute to processes like carbon sequestration, regulation of ecosystem functioning, and nutrient cycling. A comprehensive understanding of the relationship between roots and their associate microbiota can also facilitate the design of novel sustainable approaches for the benefit of these relevant agro-ecosystems. Here, we summarize the methodological approaches to unravel the composition and function of belowground microbiota, the factors influencing their interaction with tree crops, their benefits and harms, with a focus on representative examples of Biological Control Agents (BCA) used against relevant biotic constraints of tree crops. Finally, we add some concluding remarks and suggest future perspectives concerning the microbiota-assisted management strategies to sustain tree crops.

Belowground Microbiota and the Health of Tree Crops

PubMed Central

Mercado-Blanco, Jesús; Abrantes, Isabel; Barra Caracciolo, Anna; Bevivino, Annamaria; Ciancio, Aurelio; Grenni, Paola; Hrynkiewicz, Katarzyna; Kredics, László; Proença, Diogo N.

2018-01-01

Trees are crucial for sustaining life on our planet. Forests and land devoted to tree crops do not only supply essential edible products to humans and animals, but also additional goods such as paper or wood. They also prevent soil erosion, support microbial, animal, and plant biodiversity, play key roles in nutrient and water cycling processes, and mitigate the effects of climate change acting as carbon dioxide sinks. Hence, the health of forests and tree cropping systems is of particular significance. In particular, soil/rhizosphere/root-associated microbial communities (known as microbiota) are decisive to sustain the fitness, development, and productivity of trees. These benefits rely on processes aiming to enhance nutrient assimilation efficiency (plant growth promotion) and/or to protect against a number of (a)biotic constraints. Moreover, specific members of the microbial communities associated with perennial tree crops interact with soil invertebrate food webs, underpinning many density regulation mechanisms. This review discusses belowground microbiota interactions influencing the growth of tree crops. The study of tree-(micro)organism interactions taking place at the belowground level is crucial to understand how they contribute to processes like carbon sequestration, regulation of ecosystem functioning, and nutrient cycling. A comprehensive understanding of the relationship between roots and their associate microbiota can also facilitate the design of novel sustainable approaches for the benefit of these relevant agro-ecosystems. Here, we summarize the methodological approaches to unravel the composition and function of belowground microbiota, the factors influencing their interaction with tree crops, their benefits and harms, with a focus on representative examples of Biological Control Agents (BCA) used against relevant biotic constraints of tree crops. Finally, we add some concluding remarks and suggest future perspectives concerning the microbiota-assisted management strategies to sustain tree crops. PMID:29922245

July: "Soils are living: Overview of soil biodiversity, global issues, and new resources"

USDA-ARS?s Scientific Manuscript database

The July poster will provide an overview of soil biology and the many ecosystem functions that soil organisms drive including their impact on global biodiversity, climate regulation, soil health/stability, and plant growth. Five main global issues related to soil biodiversity will be presented such ...

Ammonium sorption and ammonia inhibition of nitrite-oxidizing bacteria explain contrasting soil N2O production

NASA Astrophysics Data System (ADS)

Venterea, R. T.; Sadowsky, M.; Breuillin-Sessoms, F.; Wang, P.; Clough, T. J.; Coulter, J. A.

2015-12-01

Better understanding of process controls over nitrous oxide (N2O) production in urine-impacted 'hot spots' and fertilizer bands is needed to improve mitigation strategies and emission models. Following amendment with bovine (Bos taurus) urine (Bu) or urea (Ur), we measured inorganic N, pH, N2O, and genes associated with nitrification in two soils ('L' and 'W') having similar texture, pH, C, and C/N ratio. Solution-phase ammonia (slNH3) was also calculated accounting for non-linear ammonium (NH4+) sorption capacities (ASC). Soil W displayed greater nitrification rates and nitrate (NO3-) levels than soil L, but was more resistant to nitrite (NO2-) accumulation and produced two to ten times less N2O than soil L. Genes associated with NO2- oxidation (nxrA) increased substantially in soil W but remained static in soil L. Soil NO2- was strongly correlated with N2O production, and cumulative (c-) slNH3 explained 87% of the variance in c-NO2-. Differences between soils were explained by greater slNH3 in soil L which inhibited NO2- oxidization leading to greater NO2- levels and N2O production. This is the first study to correlate the dynamics of soil slNH3, NO2-, N2O and nitrifier genes, and the first to show how ASC can regulate NO2- levels and N2O production.

Ammonium sorption and ammonia inhibition of nitrite-oxidizing bacteria explain contrasting soil N2O production.

PubMed

Venterea, Rodney T; Clough, Timothy J; Coulter, Jeffrey A; Breuillin-Sessoms, Florence; Wang, Ping; Sadowsky, Michael J

2015-07-16

Better understanding of process controls over nitrous oxide (N2O) production in urine-impacted 'hot spots' and fertilizer bands is needed to improve mitigation strategies and emission models. Following amendment with bovine (Bos taurus) urine (Bu) or urea (Ur), we measured inorganic N, pH, N2O, and genes associated with nitrification in two soils ('L' and 'W') having similar texture, pH, C, and C/N ratio. Solution-phase ammonia (slNH3) was also calculated accounting for non-linear ammonium (NH4(+)) sorption capacities (ASC). Soil W displayed greater nitrification rates and nitrate (NO3(-)) levels than soil L, but was more resistant to nitrite (NO2(-)) accumulation and produced two to ten times less N2O than soil L. Genes associated with NO2(-) oxidation (nxrA) increased substantially in soil W but remained static in soil L. Soil NO2(-) was strongly correlated with N2O production, and cumulative (c-) slNH3 explained 87% of the variance in c-NO2(-). Differences between soils were explained by greater slNH3 in soil L which inhibited NO2(-) oxidization leading to greater NO2(-) levels and N2O production. This is the first study to correlate the dynamics of soil slNH3, NO2(-), N2O and nitrifier genes, and the first to show how ASC can regulate NO2(-) levels and N2O production.

Ammonium sorption and ammonia inhibition of nitrite-oxidizing bacteria explain contrasting soil N2O production

NASA Astrophysics Data System (ADS)

Venterea, Rodney T.; Clough, Timothy J.; Coulter, Jeffrey A.; Breuillin-Sessoms, Florence

2015-07-01

Better understanding of process controls over nitrous oxide (N2O) production in urine-impacted ‘hot spots’ and fertilizer bands is needed to improve mitigation strategies and emission models. Following amendment with bovine (Bos taurus) urine (Bu) or urea (Ur), we measured inorganic N, pH, N2O, and genes associated with nitrification in two soils (‘L’ and ‘W’) having similar texture, pH, C, and C/N ratio. Solution-phase ammonia (slNH3) was also calculated accounting for non-linear ammonium (NH4+) sorption capacities (ASC). Soil W displayed greater nitrification rates and nitrate (NO3-) levels than soil L, but was more resistant to nitrite (NO2-) accumulation and produced two to ten times less N2O than soil L. Genes associated with NO2- oxidation (nxrA) increased substantially in soil W but remained static in soil L. Soil NO2- was strongly correlated with N2O production, and cumulative (c-) slNH3 explained 87% of the variance in c-NO2-. Differences between soils were explained by greater slNH3 in soil L which inhibited NO2- oxidization leading to greater NO2- levels and N2O production. This is the first study to correlate the dynamics of soil slNH3, NO2-, N2O and nitrifier genes, and the first to show how ASC can regulate NO2- levels and N2O production.

Biological soil crust as a bio-mediator alters hydrological processes in stabilized dune system of the Tengger Desert, China

NASA Astrophysics Data System (ADS)

Li, Xinrong

2016-04-01

Biological soil crust (BSC) is a vital component in the stabilized sand dunes with a living cover up to more than 70% of the total, which has been considered as a bio-mediator that directly influences and regulates the sand dune ecosystem processes. However, its influences on soil hydrological processes have been long neglected in Chinese deserts. In this study, BSCs of different successional stages were chose to test their influence on the hydrological processes of stabilized dune, where the groundwater deep exceeds 30m, further to explore why occur the sand-binding vegetation replacement between shrubs and herbs. Our long-term observation (60 years) shows that cyanobacteria crust has been colonized and developed after 3 years since the sand-binding vegetation has been established and dune fixation using planted xerophytic shrubs and made sand barrier (straw-checkerboard) on shifting dune surface, lichen and moss crust occurred after 20 years, and the cover of moss dominated crust could reach 70 % after 50 years. The colonization and development of BSC altered the initial soil water balance of revegetated areas by influencing rainfall infiltration, soil evaporation and dew water entrapment. The results show that BSC obviously reduced the infiltration that occurred during most rainfall events (80%), when rainfall was greater than 5 mm or less than 20 mm. The presence of BSC reduced evaporation of topsoil after small rainfall (<5 mm) because its high proportion of finer particles slowed the evaporation rate, thus keeping the water in the soil surface longer, and crust facilitated topsoil evaporation when rainfall reached 10 mm. The amount of dew entrapment increases with the succession of BSC. Moreover, the effect of the later successional BSC to dew entrapment, rainfall infiltration and evaporation was more obvious than the early successional BSC on stabilized dunes. In general, BSC reduced the amount of rainfall water that reached deeper soil (0.4-3m), which is where the roots of shrubs are primarily distributed. These changes in the soil moisture pattern induced shifting of sand-binding vegetation from initial planted xerophytic shrub communities with higher coverage (35%) to complex communities dominated by shallow-rooted herbaceous species with low shrub coverage (9%). In correspondence with these changes, soil water balance of the initial vegetation systems (mean soil water kept 3.5%) was turned into a new balance of current vegetation (mean soil water maintains 1.5%). Above findings provide an important enlightenment for future desertification control and sand hazards prevention by revegetation.

Linking freshwater tidal hydrology to carbon cycling in bottomland hardwood wetlands

Treesearch

Carl C. Trettin; Brooke J. Czwartacki; Craig J. Allan; Devendra M. Amatya

2016-01-01

Hydrology is recognized as one of the principal factors regulating soil biogeochemical processes in forested wetlands. However, the consequences of tidally mediated hydrology are seldom considered within forested wetlands that occur along tidal water bodies. These tidal water bodies may be either fresh or brackish, and the tidal streams function as a reservoir to...

A state-space modeling approach to estimating canopy conductance and associated uncertainties from sap flux density data

Treesearch

David M. Bell; Eric J. Ward; A. Christopher Oishi; Ram Oren; Paul G. Flikkema; James S. Clark; David Whitehead

2015-01-01

Uncertainties in ecophysiological responses to environment, such as the impact of atmospheric and soil moisture conditions on plant water regulation, limit our ability to estimate key inputs for ecosystem models. Advanced statistical frameworks provide coherent methodologies for relating observed data, such as stem sap flux density, to unobserved processes, such as...

Climate change impacts on soil carbon storage in global croplands: 1901-2010

NASA Astrophysics Data System (ADS)

Ren, W.; Tian, H.

2015-12-01

New global data finds 12% of earth's surface in cropland at present. Croplands will take on the responsibility to support approximate 60% increase in food production by 2050 as FAO estimates. In addition to nutrient supply to plants, cropland soils also play a major source and sink of greenhouse gases regulating global climate system. It is a big challenge to understand how soils function under global changes, but it is also a great opportunity for agricultural sector to manage soils to assure sustainability of agroecosystems and mitigate climate change. Previous studies have attempted to investigate the impacts of different land uses and climates on cropland soil carbon storage. However, large uncertainty still exists in magnitude and spatiotemporal patterns of global cropland soil organic carbon, due to the lack of reliable environmental databases and relatively poorly understanding of multiple controlling factors involved climate change and land use etc. Here, we use a process-based agroecosystem model (DLEM-Ag) in combination with diverse data sources to quantify magnitude and tempo-spatial patterns of soil carbon storage in global croplands during 1901-2010. We also analyze the relative contributions of major environmental variables (climate change, land use and management etc.). Our results indicate that intensive land use management may hidden the vulnerability of cropland soils to climate change in some regions, which may greatly weaken soil carbon sequestration under future climate change.

Microbial community composition explains soil respiration responses to changing carbon inputs along an Andes-to-Amazon elevation gradient

PubMed Central

Whitaker, Jeanette; Ostle, Nicholas; Nottingham, Andrew T; Ccahuana, Adan; Salinas, Norma; Bardgett, Richard D; Meir, Patrick; McNamara, Niall P; Austin, Amy

2014-01-01

1. The Andes are predicted to warm by 3–5 °C this century with the potential to alter the processes regulating carbon (C) cycling in these tropical forest soils. This rapid warming is expected to stimulate soil microbial respiration and change plant species distributions, thereby affecting the quantity and quality of C inputs to the soil and influencing the quantity of soil-derived CO2 released to the atmosphere. 2. We studied tropical lowland, premontane and montane forest soils taken from along a 3200-m elevation gradient located in south-east Andean Peru. We determined how soil microbial communities and abiotic soil properties differed with elevation. We then examined how these differences in microbial composition and soil abiotic properties affected soil C-cycling processes, by amending soils with C substrates varying in complexity and measuring soil heterotrophic respiration (RH). 3. Our results show that there were consistent patterns of change in soil biotic and abiotic properties with elevation. Microbial biomass and the abundance of fungi relative to bacteria increased significantly with elevation, and these differences in microbial community composition were strongly correlated with greater soil C content and C:N (nitrogen) ratios. We also found that RH increased with added C substrate quality and quantity and was positively related to microbial biomass and fungal abundance. 4. Statistical modelling revealed that RH responses to changing C inputs were best predicted by soil pH and microbial community composition, with the abundance of fungi relative to bacteria, and abundance of gram-positive relative to gram-negative bacteria explaining much of the model variance. 5. Synthesis. Our results show that the relative abundance of microbial functional groups is an important determinant of RH responses to changing C inputs along an extensive tropical elevation gradient in Andean Peru. Although we do not make an experimental test of the effects of climate change on soil, these results challenge the assumption that different soil microbial communities will be ‘functionally equivalent’ as climate change progresses, and they emphasize the need for better ecological metrics of soil microbial communities to help predict C cycle responses to climate change in tropical biomes. PMID:25520527

Ectomycorrhizal-dominated boreal and tropical forests have distinct fungal communities, but analogous spatial patterns across soil horizons.

PubMed

McGuire, Krista L; Allison, Steven D; Fierer, Noah; Treseder, Kathleen K

2013-01-01

Fungi regulate key nutrient cycling processes in many forest ecosystems, but their diversity and distribution within and across ecosystems are poorly understood. Here, we examine the spatial distribution of fungi across a boreal and tropical ecosystem, focusing on ectomycorrhizal fungi. We analyzed fungal community composition across litter (organic horizons) and underlying soil horizons (0-20 cm) using 454 pyrosequencing and clone library sequencing. In both forests, we found significant clustering of fungal communities by site and soil horizons with analogous patterns detected by both sequencing technologies. Free-living saprotrophic fungi dominated the recently-shed leaf litter and ectomycorrhizal fungi dominated the underlying soil horizons. This vertical pattern of fungal segregation has also been found in temperate and European boreal forests, suggesting that these results apply broadly to ectomycorrhizal-dominated systems, including tropical rain forests. Since ectomycorrhizal and free-living saprotrophic fungi have different influences on soil carbon and nitrogen dynamics, information on the spatial distribution of these functional groups will improve our understanding of forest nutrient cycling.

Regulation of C:N:P stoichiometry of microbes and soil organic matter by optimizing enzyme allocation: an omics-informed model study

NASA Astrophysics Data System (ADS)

Song, Y.; Yao, Q.; Wang, G.; Yang, X.; Mayes, M. A.

2017-12-01

Increasing evidences is indicating that soil organic matter (SOM) decomposition and stabilization process is a continuum process and controlled by both microbial functions and their interaction with minerals (known as the microbial efficiency-matrix stabilization theory (MEMS)). Our metagenomics analysis of soil samples from both P-deficit and P-fertilization sites in Panama has demonstrated that community-level enzyme functions could adapt to maximize the acquisition of limiting nutrients and minimize energy demand for foraging (known as the optimal foraging theory). This optimization scheme can mitigate the imbalance of C/P ratio between soil substrate and microbial community and relieve the P limitation on microbial carbon use efficiency over the time. Dynamic allocation of multiple enzyme groups and their interaction with microbial/substrate stoichiometry has rarely been considered in biogeochemical models due to the difficulties in identifying microbial functional groups and quantifying the change in enzyme expression in response to soil nutrient availability. This study aims to represent the omics-informed optimal foraging theory in the Continuum Microbial ENzyme Decomposition model (CoMEND), which was developed to represent the continuum SOM decomposition process following the MEMS theory. The SOM pools in the model are classified based on soil chemical composition (i.e. Carbohydrates, lignin, N-rich SOM and P-rich SOM) and the degree of SOM depolymerization. The enzyme functional groups for decomposition of each SOM pool and N/P mineralization are identified by the relative composition of gene copy numbers. The responses of microbial activities and SOM decomposition to nutrient availability are simulated by optimizing the allocation of enzyme functional groups following the optimal foraging theory. The modeled dynamic enzyme allocation in response to P availability is evaluated by the metagenomics data measured from P addition and P-deficit soil samples in Panama sites.The implementation of dynamic enzyme allocation in response to nutrient availability in the CoMEND model enables us to capture the varying microbial C/P ratio and soil carbon dynamics in response to shifting nutrient constraints over time in tropical soils.

Glyphosate sorption to soils of Argentina. Estimation of affinity coeficient by pedotransfer function

NASA Astrophysics Data System (ADS)

De Geronimo, Eduardo; Aparicio, Virginia; Costa, José Luis

2017-04-01

Argentine agricultural production is fundamentally based on a technological package that combines direct seeding and glyphosate with transgenic crops (soybean, maize and cotton). Therefore, glyphosate is the most employed herbicide in the country, where 180 to 200 million liters are applied every year. Glyphosate is strongly sorbed to soil by binding to clay minerals, layer silicates, metal oxides, non-crystalline materials or organic matter. Sorption of glyphosate is a reversible process that regulates the half-life and mobility of the herbicide and it is therefore related to the risk of contaminating courses of surface and groundwater. However, this behavior may vary depending on the characteristics of the soil on which it is applied. In addition, pH is a determining factor since it modifies the net charge in the molecule and, with it, the force of the electrostatic interaction between the glyphosate and the components of the soil. For a reliable risk assessment of groundwater contamination from pesticides precise predictions of sorption coefficients are needed. The aim of this work is to study the affinity of glyphosate to different soils of Argentina and create a model to estimate the glyphosate Freundlich sorption coefficient (Kf) from easily measurable soil properties. Adsorption of glyphosate was investigated on 12 different agricultural soils of Argentina using batch equilibration technique and fit to Freundlich sorption model. The correlation coefficients and the effects of soil characteristic factors on glyphosate adsorption parameter were analyzed through principal component and multiple lineal regression analysis. Results indicate that pH and clay contents were found to be the most significant soil factors which affect the glyphosate adsorption process. The Freundlich (Kf) pedotransfer function obtained by stepwise regression analysis was Kf = 735.2*Clay - 104.2*pH + 0.7*Polsen - 3.8*Alin. A 97.9% of the variation of glyphosate sorption coefficient could be attributed to the variation of the soil clay contents, pH, Polsen and Alin.

Soils regulate and mitigate climate change

USDA-ARS?s Scientific Manuscript database

Background/Question/Methods: The interaction of soil science and ecology can be traced back to the origins of soil science as an independent discipline within the natural sciences. Vasili Dokuchaev, the founder of modern soil science, identified five soil forming factors: parent material, climate, o...

Microbial diversity affects self-organization of the soil–microbe system with consequences for function

PubMed Central

Crawford, John W.; Deacon, Lewis; Grinev, Dmitri; Harris, James A.; Ritz, Karl; Singh, Brajesh K.; Young, Iain

2012-01-01

Soils are complex ecosystems and the pore-scale physical structure regulates key processes that support terrestrial life. These include maintaining an appropriate mixture of air and water in soil, nutrient cycling and carbon sequestration. There is evidence that this structure is not random, although the organizing mechanism is not known. Using X-ray microtomography and controlled microcosms, we provide evidence that organization of pore-scale structure arises spontaneously out of the interaction between microbial activity, particle aggregation and resource flows in soil. A simple computational model shows that these interactions give rise to self-organization involving both physical particles and microbes that gives soil unique material properties. The consequence of self-organization for the functioning of soil is determined using lattice Boltzmann simulation of fluid flow through the observed structures, and predicts that the resultant micro-structural changes can significantly increase hydraulic conductivity. Manipulation of the diversity of the microbial community reveals a link between the measured change in micro-porosity and the ratio of fungal to bacterial biomass. We suggest that this behaviour may play an important role in the way that soil responds to management and climatic change, but that this capacity for self-organization has limits. PMID:22158839

The economics of soil C sequestration

NASA Astrophysics Data System (ADS)

Alexander, P.; Paustian, K.; Smith, P.; Moran, D.

2014-12-01

Carbon is a critical component of soil vitality and of our ability to produce food. Carbon sequestered in soils also provides a further regulating ecosystem service, valued as the avoided damage from global climate change. We consider the demand and supply attributes that underpin and constrain the emergence of a market value for this vital global ecosystem service: markets being what economists regard as the most efficient institutions for allocating scarce resources to the supply and consumption of valuable goods. This paper considers how a potentially large global supply of soil carbon sequestration is reduced by economic and behavioural constraints that impinge on the emergence of markets, and alternative public policies that can efficiently transact demand for the service from private and public sector agents. In essence this is a case of significant market failure. In the design of alternative policy options we consider whether soil carbon mitigation is actually cost-effective relative to other measures in agriculture and elsewhere in the economy, and the nature of behavioural incentives that hinder policy options. We suggest that reducing cost and uncertainties of mitigation through soil-based measures is crucial for improving uptake. Monitoring and auditing processes will also be required to eventually facilitate wide-scale adoption of these measures.

Soil management shapes ecosystem service provision and trade-offs in agricultural landscapes.

PubMed

Tamburini, Giovanni; De Simone, Serena; Sigura, Maurizia; Boscutti, Francesco; Marini, Lorenzo

2016-08-31

Agroecosystems are principally managed to maximize food provisioning even if they receive a large array of supporting and regulating ecosystem services (ESs). Hence, comprehensive studies investigating the effects of local management and landscape composition on the provision of and trade-offs between multiple ESs are urgently needed. We explored the effects of conservation tillage, nitrogen fertilization and landscape composition on six ESs (crop production, disease control, soil fertility, water quality regulation, weed and pest control) in winter cereals. Conservation tillage enhanced soil fertility and pest control, decreased water quality regulation and weed control, without affecting crop production and disease control. Fertilization only influenced crop production by increasing grain yield. Landscape intensification reduced the provision of disease and pest control. We also found tillage and landscape composition to interactively affect water quality regulation and weed control. Under N fertilization, conventional tillage resulted in more trade-offs between ESs than conservation tillage. Our results demonstrate that soil management and landscape composition affect the provision of several ESs and that soil management potentially shapes the trade-offs between them. © 2016 The Author(s).

Short-term changes of metal availability in soil. Part I: comparing sludge-amended with metal-spiked soils.

PubMed

Natal-da-Luz, T; Ojeda, G; Costa, M; Pratas, J; Lanno, R P; Van Gestel, C A M; Sousa, J P

2012-08-01

Sewage sludge application to soils is regulated by its total metal content. However, the real risk of metals is determined by the fraction that is biologically available. The available fraction is highly related to the strength of metal binding by the matrix, which is a dynamic process. The evaluation of the fate of metals in time can contribute increased accuracy of ecological risk assessment. Aiming to evaluate short-term changes in metal availability when metals were applied to soil directly (metal-spiked) or by way of an organic matrix (sludge-amended), a laboratory experiment was performed using open microcosms filled with agricultural soil. A concentration gradient of industrial sludge (11, 15, 55, and 75 t/ha) that was contaminated predominantly with chromium, copper, nickel, and zinc, or soil freshly spiked with the same concentrations of these metals, were applied on top of the agricultural soil. After 0, 3, 6, and 12 weeks, total (HNO(3) 69 %) and 0.01 M CaCl(2)-extractable metal concentrations in soil and metal content in the percolates were measured. Results demonstrated that comparison between sludge-amended and metal-spiked soils may give important information about the role of sludge matrix on metal mobility and availability in soil. In sludge-amended soils, extractable-metal concentrations were independent of the sludge concentration and did not change over time. In metal-spiked soils, metal extractability decreased with time due to ageing and transport of metals to deeper layers. In general, the sludge matrix increased the adsorption of metals, thus decreasing their mobility in soils.

The influence of tree species on small scale spatial heterogeneity of soil respiration in a temperate mixed forest.

PubMed

Li, Weibin; Bai, Zhen; Jin, Changjie; Zhang, Xinzhong; Guan, Dexin; Wang, Anzhi; Yuan, Fenghui; Wu, Jiabing

2017-07-15

Soil respiration is the largest terrestrial carbon flux into the atmosphere, and different tree species could directly influence root derived respiration and indirectly regulate soil respiration rates by altering soil chemical and microbial properties. In this study, we assessed the small scale spatial heterogeneity of soil respiration and the microbial community below the canopy of three dominant tree species (Korean pine (Pinus koraiensis), Mongolian oak (Quercus mongolica), and Manchuria ash (Fraxinus mandshurica)) in a temperate mixed forest in Northeast China. Soil respiration differed significantly during several months and increased in the order of oak

Soil cover patterns and dynamics impact on GHG fluxes in RF native and man-changed ecosystems

NASA Astrophysics Data System (ADS)

Vasenev, Ivan; Nesterova, Olga

2017-04-01

The increased soil spatial-temporal variability is mutual feature for most mature natural and particularly man-changed terrestrial ecosystems in Central and Far-East regions of Russia with soil cover strongly pronounced bioclimatic zoning and landscape-geomorphologic differentiation. Soil cover patterns (SCP) detailed morphogenetic analysis and typification is useful tool for soil forming and degradation processes quantitative evaluation, land ecological state and functional quality quantitative assessment. Quantitative analysis and functional-ecological interpretation of representative SCP spatial variability is especially important for environmentally friendly and demand-driven land-use planning and decision making. The carried out 33-years region- and local-scale researches of the wide zonal-provincial set of representative ecosystems and SCP with different types and history of land-use (forest, meadow-steppe, agricultural and recreational ones) give us the interregional multi-factorial matrix of elementary soil cover patterns (ESCP) with different land-use practices and history, soil-geomorphologic features, environmental and microclimate conditions. Succession process-based analysis of modern evolution of man-changed and natural soils and ESCP essentially increases accuracy of quantitative assessments of dominant soil forming and degradation processes rate and potential, their influence on land and soil cover quality and ecosystem services. Their results allow developing the regional and landscape adapted versions of automated land evaluation systems and land-use DSS. The validation and ranging of the limiting factors of ESCP regulation and develop¬ment, ecosystem principal services (with especial attention on greenhouse gases emissions, soil carbon dynamics and sequestration potential, biodiversity and productivity, hydrological regimes and geomorphologic stabilization), land functional qualities and agroecological state have been done for dominating and most dynamical components of ESCP regional-typological forms - with application of regional/local GIS, ESCP mapping, kriging, correlation tree models and adapted to region DSS. Key-site monitoring results and regional generalized data showed 1-1.5 % Corg lost during last 50 years period, active processes of CO2, CH4 and N2O emission (2-4-time variability in frame of one farm and of one vegetation season) and humus redistribution throw soil profile and soil cover patterns. Forest-steppe Chernozem ecosystems are usually characterized by more stable SCP than forest or steppe ones. The ratio between erosive and biological losses in humus supplies is estimated as fifty-fifty with strong spatial varia¬bility due to slope and land-use parameters. These problem agroecological situations can be essentially improved by climate-smart agriculture practice development with DSS-based landscape-adaptive land-use systems and organic farming stimulation with environmentally friendly technologies, adapted to conditions of concrete agrolandscapes in Central and Far-East Russia.

Use of Quantity Indicators for Forecasting of Biogeochemical Behavior Sr-90 and Cs-137 in the Conditions of the Combined Pollution of Soils

NASA Astrophysics Data System (ADS)

Lavrentyeva, G. V.; Geshel, I. V.

2012-04-01

From huge number of the radionuclides generated by anthropogenous activity the major value the group of biologically active radionuclides has. First of all, it Sr-90 and Cs-137 which play an important role in various radiological situations. In researches on studying of laws of behavior in environment Sr -90 and Cs-137 the basic attention was given to studying of influence of their chemical analogs Ca and K, instead of stable isotopes Sr and Cs. However, even low concentration of stable isotopes Sr and Cs in soil can influence on biogeochemical behavior of radionuclides. Objects of research: dernovo-podsolic soil, summer barley of grade, stable and radioactive isotopes Sr, Cs. Schemes of experiments provided entering of 8 doses stable Cs and Sr in the range from 0 to 500-750 mg/kg of air-dry weight of soil and 50 kBq of radionuclides on each frequency. Absorption of radionuclides by plants will be defined by two parametres of transport. The first - factor of transition (TF), which characterises level of regulation of process of carrying over of a radionuclide from soil in plants and depends on distribution of an element between the firm and liquid phase, distribution defined in the factor (Kd). The second parametre - factor of concentrating (CF) which characterises biological level of regulation of this process. The increase in quantity of stable Sr in soil leads to an active desorption Sr-90 in a soil solution on all frequency. Kd of Cs-137 on the general background of which decrease in values some increase in factor in the range of 120-225 mg of Cs/kg of soil is observed. Received Kd of radionuclides will well be co-ordinated with the revealed functional dependences between concentration Cs and Sr in soil and specific activity Cs-137 and Sr-90 in a soil solution. Comparison CF of two radionuclides shows that plants absorb Sr-90 from a soil solution actively, than Cs-137. Thus values CF of Sr-90 in the investigated interval of concentration of a stable isotope are in inverse relationship from the element maintenance in a soil solution in all investigated interval of the maintenance of the isotope carrier whereas change similar the indicator for Cs-137 has more difficult dependence. The revealed laws of change of CF studied radionuclides prove to be true the received dependences of accumulation Sr-90 and Cs-137 in barley from specific activity of radionuclides in a soil solution. Values of TF of Sr-90 are in direct dependence on level of the maintenance stable Sr, below similar indicators for Cs-137 in all interval of change of concentration of stable isotopes. It finds reflection in the analysis of functional dependences between concentration of radionuclides in plants and soil. The received values of studied factors completely reflect change of specific activity of radionuclides in a soil solution and their biological availability depending on concentration of their stable isotopes that confirms use possibility in the prognostic purposes of these indicators.

One plant, two plants, three plants, four: does soil carbon respond to diversifying by one plant more? (Invited)

NASA Astrophysics Data System (ADS)

Grandy, S.

2013-12-01

Plant diversity is known to strongly influence aboveground ecosystem functions, but our understanding of its effects on belowground carbon (C) cycling has not kept pace. We know in broad terms that the belowground implications of reducing plant diversity include changes in soil nutrient cycling and biological communities, but remain uncertain about the specific links between plant diversity, soil microbial communities, and soil C cycling. Our knowledge gap is especially wide in agricultural systems, which comprise ~50% of the contiguous U.S. and differ from non-managed systems because diversity: (1) occurs primarily over time (i.e. crop rotations) rather than in space (i.e. inter-cropping); (2) exists as one of multiple management factors that potentially regulates soil C dynamics; and (3) is almost always low, with the addition or subtraction of a single plant species often representing a substantial change in diversity. I have been addressing the uncertain relationships between agricultural plant diversity and soil C cycling with a multi-tiered approach that includes a global meta-analysis, site-specific field manipulations, and intensive laboratory analyses. The meta-analysis using 122 studies shows that compared to single-crop monocultures, rotations increased soil microbial biomass C by 20.7% and microbial biomass N by 26.1% as well as total soil C and N. In a complimentary field study at the W.K. Kellogg Biological Station LTER Cropping Biodiversity Gradient Experiment we examined microbial communities, C cycling processes, and trace gas emissions in five rotation sequences varying in complexity from continuous corn monoculture to a five crop three-year rotation. Finding striking differences between monocultures and systems with more complex plant communities, these results confirm our meta-analysis, and highlight the strong effects of diversifying plant communities in agricultural systems. A complimentary lab study examining decomposition processes in monocultures and more diverse rotations shows that rotation soils process chemically complex C more rapidly. My studies point to complex relationships between the chemistry of substrate inputs and their fate in soils, while also emphasizing an important management consideration: maintaining soil biological functions and ecosystem services in managed agricultural systems requires the rotation of different crops, rather than the production of single crop monocultures.

Mercury methylation in rice paddies and its possible controlling factors in the Hg mining area, Guizhou province, Southwest China.

PubMed

Zhao, Lei; Qiu, Guangle; Anderson, Christopher W N; Meng, Bo; Wang, Dingyong; Shang, Lihai; Yan, Haiyu; Feng, Xinbin

2016-08-01

Understanding mercury (Hg) methylation/demethylation processes and the factors controlling methylmercury (MeHg) production within the rice paddy ecosystem of Hg mining areas is critical to assess the risk of MeHg contamination in rice grain. Two typical Hg-contaminated mining sites, a current-day artisanal site (Gouxi) and an abandoned site (Wukeng), were chosen in this study. We qualified the in situ specific methylation/demethylation rate constants in rice paddy soil during a complete rice-growing season. Our results demonstrate that MeHg levels in rice paddy soil were a function of both methylation and demethylation processes and the net methylation potential in the rice paddy soil reflected the measured MeHg production at any time point. Sulfate stimulating the activity of sulfate-reducing bacteria was a potentially important metabolic pathway for Hg methylation in rice paddies. We suggest that bioavailable Hg derived from new atmospheric deposition appears to be the primary factor regulating net MeHg production in rice paddies. Copyright © 2016 Elsevier Ltd. All rights reserved.

Ground-level climate at a peatland wind farm in Scotland is affected by wind turbine operation

NASA Astrophysics Data System (ADS)

Armstrong, Alona; Burton, Ralph R.; Lee, Susan E.; Mobbs, Stephen; Ostle, Nicholas; Smith, Victoria; Waldron, Susan; Whitaker, Jeanette

2016-04-01

The global drive to produce low-carbon energy has resulted in an unprecedented deployment of onshore wind turbines, representing a significant land use change for wind energy generation with uncertain consequences for local climatic conditions and the regulation of ecosystem processes. Here, we present high-resolution data from a wind farm collected during operational and idle periods that shows the wind farm affected several measures of ground-level climate. Specifically, we discovered that operational wind turbines raised air temperature by 0.18 °C and absolute humidity (AH) by 0.03 g m-3 during the night, and increased the variability in air, surface and soil temperature throughout the diurnal cycle. Further, the microclimatic influence of turbines on air temperature and AH decreased logarithmically with distance from the nearest turbine. These effects on ground-level microclimate, including soil temperature, have uncertain implications for biogeochemical processes and ecosystem carbon cycling, including soil carbon stocks. Consequently, understanding needs to be improved to determine the overall carbon balance of wind energy.

Underestimation of soil carbon stocks by Yasso07, Q, and CENTURY models in boreal forest linked to overlooking site fertility

NASA Astrophysics Data System (ADS)

Ťupek, Boris; Ortiz, Carina; Hashimoto, Shoji; Stendahl, Johan; Dahlgren, Jonas; Karltun, Erik; Lehtonen, Aleksi

2016-04-01

The soil organic carbon stock (SOC) changes estimated by the most process based soil carbon models (e.g. Yasso07, Q and CENTURY), needed for reporting of changes in soil carbon amounts for the United Nations Framework Convention on Climate Change (UNFCCC) and for mitigation of anthropogenic CO2 emissions by soil carbon management, can be biased if in a large mosaic of environments the models are missing a key factor driving SOC sequestration. To our knowledge soil nutrient status as a missing driver of these models was not tested in previous studies. Although, it's known that models fail to reconstruct the spatial variation and that soil nutrient status drives the ecosystem carbon use efficiency and soil carbon sequestration. We evaluated SOC stock estimates of Yasso07, Q and CENTURY process based models against the field data from Swedish Forest Soil National Inventories (3230 samples) organized by recursive partitioning method (RPART) into distinct soil groups with underlying SOC stock development linked to physicochemical conditions. These models worked for most soils with approximately average SOC stocks, but could not reproduce higher measured SOC stocks in our application. The Yasso07 and Q models that used only climate and litterfall input data and ignored soil properties generally agreed with two third of measurements. However, in comparison with measurements grouped according to the gradient of soil nutrient status we found that the models underestimated for the Swedish boreal forest soils with higher site fertility. Accounting for soil texture (clay, silt, and sand content) and structure (bulk density) in CENTURY model showed no improvement on carbon stock estimates, as CENTURY deviated in similar manner. We highlighted the mechanisms why models deviate from the measurements and the ways of considering soil nutrient status in further model development. Our analysis suggested that the models indeed lack other predominat drivers of SOC stabilization presumably the different role of microbes in carbon mineralization in relation to nitrogen availability and the organo - mineral carbon associations. Our results imply that the role of soil nutrient status as a regulator of carbon mineralization has to be re-evaluated, because we should have models that have their steady state SOC stocks at right level in order to predict future SOC change.

Contrasting diel hysteresis between soil autotrophic and heterotrophic respiration in a desert ecosystem under different rainfall scenarios

PubMed Central

Song, Weimin; Chen, Shiping; Zhou, Yadan; Wu, Bo; Zhu, Yajuan; Lu, Qi; Lin, Guanghui

2015-01-01

Diel hysteresis occurs often between soil CO2 efflux (RS) and temperature, yet, little is known if diel hysteresis occurs in the two components of RS, i.e., autotrophic respiration (RA) and heterotrophic respiration (RH), and how diel hysteresis will respond to future rainfall change. We conducted a field experiment in a desert ecosystem in northern China simulating five different scenarios of future rain regimes. Diel variations of soil CO2 efflux and soil temperature were measured on Day 6 and Day 16 following the rain addition treatments each month during the growing season. We found contrasting responses in the diel hysteresis of RA and RH to soil temperature, with a clockwise hysteresis loop for RH but a counter-clockwise hysteresis loop for RA. Rain addition significantly increased the magnitude of diel hysteresis for both RH and RA on Day 6, but had no influence on either on Day 16 when soil moisture was much lower. These findings underline the different roles of biological (i.e. plant and microbial activities) and physical-chemical (e.g. heat transport and inorganic CO2 exchange) processes in regulating the diel hysteresis of RA and RH, which should be considered when estimating soil CO2 efflux in desert regions under future rainfall regime. PMID:26615895

Networking our science to characterize the state, vulnerabilities, and management opportunities of soil organic matter

USGS Publications Warehouse

Harden, Jennifer W.; Hugelius, Gustaf; Ahlström, Anders; Blankinship, Joseph C.; Bond-Lamberty, Ben; Lawrence, Corey; Loisel, Julie; Malhotra, Avni; Jackson, Robert B.; Ogle, Stephen M.; Phillips, Claire; Ryals, Rebecca; Todd-Brown, Katherine; Vargas, Rodrigo; Vergara, Sintana E.; Cotrufo, M. Francesca; Keiluweit, Marco; Heckman, Katherine; Crow, Susan E.; Silver, Whendee L.; DeLonge, Marcia; Nave, Lucas E.

2018-01-01

Soil organic matter (SOM) supports the Earth's ability to sustain terrestrial ecosystems, provide food and fiber, and retains the largest pool of actively cycling carbon. Over 75% of the soil organic carbon (SOC) in the top meter of soil is directly affected by human land use. Large land areas have lost SOC as a result of land use practices, yet there are compensatory opportunities to enhance productivity and SOC storage in degraded lands through improved management practices. Large areas with and without intentional management are also being subjected to rapid changes in climate, making many SOC stocks vulnerable to losses by decomposition or disturbance. In order to quantify potential SOC losses or sequestration at field, regional, and global scales, measurements for detecting changes in SOC are needed. Such measurements and soil-management best practices should be based on well established and emerging scientific understanding of processes of C stabilization and destabilization over various timescales, soil types, and spatial scales. As newly engaged members of the International Soil Carbon Network, we have identified gaps in data, modeling, and communication that underscore the need for an open, shared network to frame and guide the study of SOM and SOC and their management for sustained production and climate regulation.

Health Risk-Based Assessment and Management of Heavy Metals-Contaminated Soil Sites in Taiwan

PubMed Central

Lai, Hung-Yu; Hseu, Zeng-Yei; Chen, Ting-Chien; Chen, Bo-Ching; Guo, Horng-Yuh; Chen, Zueng-Sang

2010-01-01

Risk-based assessment is a way to evaluate the potential hazards of contaminated sites and is based on considering linkages between pollution sources, pathways, and receptors. These linkages can be broken by source reduction, pathway management, and modifying exposure of the receptors. In Taiwan, the Soil and Groundwater Pollution Remediation Act (SGWPR Act) uses one target regulation to evaluate the contamination status of soil and groundwater pollution. More than 600 sites contaminated with heavy metals (HMs) have been remediated and the costs of this process are always high. Besides using soil remediation techniques to remove contaminants from these sites, the selection of possible remediation methods to obtain rapid risk reduction is permissible and of increasing interest. This paper discusses previous soil remediation techniques applied to different sites in Taiwan and also clarified the differences of risk assessment before and after soil remediation obtained by applying different risk assessment models. This paper also includes many case studies on: (1) food safety risk assessment for brown rice growing in a HMs-contaminated site; (2) a tiered approach to health risk assessment for a contaminated site; (3) risk assessment for phytoremediation techniques applied in HMs-contaminated sites; and (4) soil remediation cost analysis for contaminated sites in Taiwan. PMID:21139851

Simulating emissions of 1,3-dichloropropene after soil fumigation under field conditions.

PubMed

Yates, S R; Ashworth, D J

2018-04-15

Soil fumigation is an important agricultural practice used to produce many vegetable and fruit crops. However, fumigating soil can lead to atmospheric emissions which can increase risks to human and environmental health. A complete understanding of the transport, fate, and emissions of fumigants as impacted by soil and environmental processes is needed to mitigate atmospheric emissions. Five large-scale field experiments were conducted to measure emission rates for 1,3-dichloropropene (1,3-D), a soil fumigant commonly used in California. Numerical simulations of these experiments were conducted in predictive mode (i.e., no calibration) to determine if simulation could be used as a substitute for field experimentation to obtain information needed by regulators. The results show that the magnitude of the volatilization rate and the total emissions could be adequately predicted for these experiments, with the exception of a scenario where the field was periodically irrigated after fumigation. In addition, the timing of the daily peak 1,3-D emissions was not accurately predicted for these experiments due to the peak emission rates occurring during the night or early-morning hours. This study revealed that more comprehensive mathematical models (or adjustments to existing models) are needed to fully describe emissions of soil fumigants from field soils under typical agronomic conditions. Published by Elsevier B.V.

Topographically-determined soil thickening explained spatial variability of soil carbon and nitrogen in Southern California grasslands

NASA Astrophysics Data System (ADS)

Lin, Y.; Prentice, S., III; Tran, T.; Bingham, N.; King, J. Y.; Chadwick, O.

2015-12-01

At the scale of hillslopes, topography strongly regulates soil formation, affecting hillslope hydrology and biological activities. Topographic control of soil formation is particularly strong for semi-arid landscapes where soil thickening is induced by pedoturbation and soil creep. Thus, terrain attributes hold great potential for modeling full profile soil C and N stocks at the hillslope scale in these landscapes. In this study, we developed predictions of grassland soil C and N stocks using digital terrain attributes scaled to the signal of site-specific hillslope geomorphic processes. We found that soil thickness was the major control of soil organic C and N stocks and was best predicted by mean curvature. This curvature dependency of soil thickness affected prediction of organic C and N stocks because of the C and N added by taking subsoil into account. We also found that curvature was positively correlated with depth to carbonate reflecting drier soil conditions in convex hillslope positions and wetter soil conditions in concave areas. Slope aspect also had a marginal effect on soil C and N stocks; soil organic C and N stocks on the north-facing slope tended to be higher than those on the south-facing slope. We found that terrain attributes at medium resolutions (8 to 16 m) were most effective in modeling soil C and N stocks. Overall, terrain attributes explained 61% of the variation in soil thickness and 49% of the variation in soil organic C stock. Our results suggest that curvature-induced soil thickening, coupled with aspect, likely exerts a first-order control on soil organic C and N accumulation rates, and these changes occur predominantly in subsoil. Thus our data highlight the importance of subsoil in mapping soil C and N stocks and other soil properties. Our model also demonstrates how scale-driven analysis may guide soil C and N prediction in other hillslope dominated regions.

Persistence of the dominant soil phylum Acidobacteria by trace gas scavenging

PubMed Central

Greening, Chris; Carere, Carlo R.; Rushton-Green, Rowena; Harold, Liam K.; Hards, Kiel; Taylor, Matthew C.; Morales, Sergio E.; Stott, Matthew B.; Cook, Gregory M.

2015-01-01

The majority of microbial cells in global soils exist in a spectrum of dormant states. However, the metabolic processes that enable them to survive environmental challenges, such as nutrient-limitation, remain to be elucidated. In this work, we demonstrate that energy-starved cultures of Pyrinomonas methylaliphatogenes, an aerobic heterotrophic acidobacterium isolated from New Zealand volcanic soils, persist by scavenging the picomolar concentrations of H2 distributed throughout the atmosphere. Following the transition from exponential to stationary phase due to glucose limitation, the bacterium up-regulates by fourfold the expression of an eight-gene operon encoding an actinobacteria-type H2-uptake [NiFe]-hydrogenase. Whole-cells of the organism consume atmospheric H2 in a first-order kinetic process. Hydrogen oxidation occurred most rapidly under oxic conditions and was weakly associated with the cell membrane. We propose that atmospheric H2 scavenging serves as a mechanism to sustain the respiratory chain of P. methylaliphatogenes when organic electron donors are scarce. As the first observation of H2 oxidation to our knowledge in the Acidobacteria, the second most dominant soil phylum, this work identifies new sinks in the biogeochemical H2 cycle and suggests that trace gas oxidation may be a general mechanism for microbial persistence. PMID:26240343

Consistently inconsistent drivers of microbial diversity and abundance at macroecological scales.

PubMed

Hendershot, John Nicholas; Read, Quentin D; Henning, Jeremiah A; Sanders, Nathan J; Classen, Aimée T

2017-07-01

Macroecology seeks to understand broad-scale patterns in the diversity and abundance of organisms, but macroecologists typically study aboveground macroorganisms. Belowground organisms regulate numerous ecosystem functions, yet we lack understanding of what drives their diversity. Here, we examine the controls on belowground diversity along latitudinal and elevational gradients. We performed a global meta-analysis of 325 soil communities across 20 studies conducted along temperature and soil pH gradients. Belowground taxa, whether bacterial or fungal, observed along a given gradient of temperature or soil pH were equally likely to show a linear increase, linear decrease, humped pattern, trough-shaped pattern, or no pattern in diversity along the gradient. Land-use intensity weakly affected the diversity-temperature relationship, but no other factor did so. Our study highlights disparities among diversity patterns of soil microbial communities. Belowground diversity may be controlled by the associated climatic and historical contexts of particular gradients, by factors not typically measured in community-level studies, or by processes operating at scales that do not match the temporal and spatial scales under study. Because these organisms are responsible for a suite of key processes, understanding the drivers of their distribution and diversity is fundamental to understanding the functioning of ecosystems. © 2017 by the Ecological Society of America.

[Distribution of soil organic carbon, total nitrogen, total phosphorus and water stable aggregates of cropland with different soil textures on the Loess Plateau, Northwest China].

PubMed

Ge, Nan Nan; Shi, Yun; Yang, Xian Long; Zhang, Qing Yin; Li, Xue Zhang; Jia, Xiao Xu; Shao, Ming An; Wei, Xiao Rong

2017-05-18

In this study, combined with field investigation and laboratory analyses, we assessed the distribution of soil organic carbon, nitrogen, phosphorous contents and their stoichiometric ratios, and the distribution of soil water stable aggregates along a soil texture gradient in the cropland of the Loess Plateau to understand the effect of soil texture and the regulation of soil aggregates on soil fertility in cropland. The results showed that, with the change from fine soils to coarse soils along the texture gradient (loam clay→ clay loam→ sandy loam), the contents of macroaggregates, organic carbon, nitrogen, phosphorous and their stoichiometric ratios decreased, while pH value and microaggregates content showed an opposite changing pattern. The contents of macroaggregates, organic carbon, nitrogen, phosphorous, and C/P and N/P were significantly increased, but pH value and microaggregates content were significantly decreased with increasing the soil clay content. Furthermore, the contents of organic carbon, nitrogen, phosphorous, and C/P and N/P increased with the increase of macroaggregates content. These results indicated that soil fertility in croplands at a regional scale was mainly determined by soil texture, and was regulated by soil macroaggregates.

Effect of land use change on soil properties and functions

NASA Astrophysics Data System (ADS)

Tonutare, Tonu; Kõlli, Raimo; Köster, Tiina; Rannik, Kaire; Szajdak, Lech; Shanskiy, Merrit

2014-05-01

For good base of sustainable land management and ecologically sound protection of soils are researches on soil properties and functioning. Ecosystem approach to soil properties and functioning is equally important in both natural and cultivated land use conditions. Comparative analysis of natural and agro-ecosystems formed on similar soil types enables to elucidate principal changes caused by land use change (LUC) and to elaborate the best land use practices for local pedo-ecological conditions. Taken for actual analysis mineral soils' catena - rendzina → brown soils → pseudopodzolic soils → gley-podzols - represent ca 1/3 of total area of Estonian normal mineral soils. All soils of this catena differ substantially each from other by calcareousness, acidity, nutrition conditions, fabric and humus cover type. This catena (representative to Estonian pedo-ecological conditions) starts with drought-prone calcareous soils. Brown (distributed in northern and central Estonia) and pseudopodzolic soils (in southern Estonia) are the most broadly acknowledged for agricultural use medium-textured high-quality automorphic soils. Dispersedly distributed gley-podzols are permanently wet and strongly acid, low-productivity sandy soils. In presentation four complex functions of soils are treated: (1) being a suitable soil environment for plant cover productivity (expressed by annual increment, Mg ha-1 yr-1); (2) forming adequate conditions for decomposition, transformation and conversion of fresh falling litter (characterized by humus cover type); (3) deposition of humus, individual organic compounds, plant nutrition elements, air and water, and (4) forming (bio)chemically variegated active space for soil type specific edaphon. Capacity of soil cover as depositor (3) depends on it thickness, texture, calcareousness and moisture conditions. Biological activity of soil (4) is determined by fresh organic matter influx, quality and quantity of biochemical substances and humus, and pedo-ecological conditions. LUC from natural to arable is accompanied by different regulations: (1) regular restoration of plant available nutrition elements' stocks in soil, (2) regulation (if needed) of water regime of gleyed and gley soils, (3) optimizing of soil actual acidity by liming, and (4) forming a suitable for crops seed bed instead of natural epipedon. Principal changes are occurred in fabric and agrochemical properties of topsoil and in soil functioning. The connected with LUC changes in soil functioning are: (1) increase of openness level of chemical elements cycling and nutrition elements concentration in phytomass, and (2) decrease of total phytomass, species diversity, amount of annual falling litter and content of mortmass in soil cover. These changes lead to decreasing of biological control on soil resources, flux of energy and substances to soil processes, and volume of cycling. At the same time the intensity of organic matter decomposition and outflow of nutrition elements are increased. All these changes are resulted by alteration of food chains and exhausting of nutrition elements' stocks. The changes in soil functioning (decrease or increase of productivity) depend much on soil type. The aspects of functioning, which do not changed with LUC are chemical-textural potential of soil cover and functioning character of subsoil. The sound matching of soil and plant cover is of decisive importance for sustainable functioning of ecosystem and in attaining a good environmental status of the area.

Modelling the diurnal and seasonal dynamics of soil CO2 exchange in a semiarid ecosystem with high plant-interspace heterogeneity

NASA Astrophysics Data System (ADS)

Gong, Jinnan; Wang, Ben; Jia, Xin; Feng, Wei; Zha, Tianshan; Kellomäki, Seppo; Peltola, Heli

2018-01-01

We used process-based modelling to investigate the roles of carbon-flux (C-flux) components and plant-interspace heterogeneities in regulating soil CO2 exchanges (FS) in a dryland ecosystem with sparse vegetation. To simulate the diurnal and seasonal dynamics of FS, the modelling considered simultaneously the CO2 production, transport and surface exchanges (e.g. biocrust photosynthesis, respiration and photodegradation). The model was parameterized and validated with multivariate data measured during the years 2013-2014 in a semiarid shrubland ecosystem in Yanchi, northwestern China. The model simulation showed that soil rewetting could enhance CO2 dissolution and delay the emission of CO2 produced from rooting zone. In addition, an ineligible fraction of respired CO2 might be removed from soil volumes under respiration chambers by lateral water flows and root uptakes. During rewetting, the lichen-crusted soil could shift temporally from net CO2 source to sink due to the activated photosynthesis of biocrust but the restricted CO2 emissions from subsoil. The presence of plant cover could decrease the root-zone CO2 production and biocrust C sequestration but increase the temperature sensitivities of these fluxes. On the other hand, the sensitivities of root-zone emissions to water content were lower under canopy, which may be due to the advection of water flows from the interspace to canopy. To conclude, the complexity and plant-interspace heterogeneities of soil C processes should be carefully considered to extrapolate findings from chamber to ecosystem scales and to predict the ecosystem responses to climate change and extreme climatic events. Our model can serve as a useful tool to simulate the soil CO2 efflux dynamics in dryland ecosystems.

Managing soil microbial communities in grain production systems through cropping practices

NASA Astrophysics Data System (ADS)

Gupta, Vadakattu

2013-04-01

Cropping practices can significantly influence the composition and activity of soil microbial communities with consequences to plant growth and production. Plant type can affect functional capacity of different groups of biota in the soil surrounding their roots, rhizosphere, influencing plant nutrition, beneficial symbioses, pests and diseases and overall plant health and crop production. The interaction between different players in the rhizosphere is due to the plethora of carbon and nutritional compounds, root-specific chemical signals and growth regulators that originate from the plant and are modulated by the physico-chemical properties of soils. A number of plant and environmental factors and management practices can influence the quantity and quality of rhizodeposition and in turn affect the composition of rhizosphere biota communities, microbe-fauna interactions and biological processes. Some of the examples of rhizosphere interactions that are currently considered important are: proliferation of plant and variety specific genera or groups of microbiota, induction of genes involved in symbiosis and virulence, promoter activity in biocontrol agents and genes correlated with root adhesion and border cell quality and quantity. The observation of variety-based differences in rhizodeposition and associated changes in rhizosphere microbial diversity and function suggests the possibility for the development of varieties with specific root-microbe interactions targeted for soil type and environment i.e. designer rhizospheres. Spatial location of microorganisms in the heterogeneous field soil matrix can have significant impacts on biological processes. Therefore, for rhizosphere research to be effective in variable seasonal climate and soil conditions, it must be evaluated in the field and within a farming systems context. With the current focus on security of food to feed the growing global populations through sustainable agricultural production systems there is a need to develop innovative cropping systems that are both economically and environmentally sustainable.

Metabolite recycling and bidirectional C fluxes: Revolutionizing our view on microbial C cycling in soils

NASA Astrophysics Data System (ADS)

Dippold, M. A.; Apostel, C.; Kuzyakov, Y.

2016-12-01

Biogeochemists' view on microbial C transformation in soil has rarely exceed a strongly simplified concept assuming that C gets either oxidized to CO2 via the microbial catabolism or incorporated into biomass via the anabolism. However, life in a C limited environment as challenging as soil requires microbial adaptation strategies at all levels of metabolism. By coupling of position-specific labeling of core metabolites with compound-specific isotope analysis we demonstrated that catabolic oxidation of these metabolites exists in parallel to reductive, energy consuming pathways, reducing them for anabolic purposes. Up to 55% of glucose, incorporated into the glucose derivative glucosamine, first passed glycolysis before allocated back via gluconeogenesis. Similarly, glutamate-derived C is allocated via anaplerotic pathways towards fatty acid synthesis and in parallel to its oxidation in the citric acid cycle. Furthermore, position-specific labeling of rather `cost-intensive' biomass compounds such as fatty acids revealed that intact recycling of metabolites is a crucial microbial adaptation to C scarcity in soils. Both processes are unlikely to occur in pure cultures, where constant growth conditions under high C supply allow a straight unidirectional regulation of C metabolism. However, unstable environmental conditions, C scarcity and interactions between a still unknown diversity of microorganisms in soils are likely to induce the observed metabolic diversity. To understand how microorganisms catalyze the biogeochemical fluxes in soil, a profound understanding of their metabolic adaptation strategies such as recycling or switching between bidirectional fluxes is crucial. Metabolic flux models adapted to soil microbial communities and their regulatory strategies will not only deepen our understanding on the microorganims' reactions to environmental changes but also create the prerequisits for a quantitative prediction of biogeochemical fluxes based on the underlying microbial processes.

Repression of fungal plant pathogens and fungal-related contaminants: Selected ecosystem services by soil fauna communities in agroecosystems

NASA Astrophysics Data System (ADS)

Meyer-Wolfarth, Friederike; Schrader, Stefan; Oldenburg, Elisabeth; Brunotte, Joachim; Weinert, Joachim

2017-04-01

In agroecosystems soil-borne fungal plant diseases are major yield-limiting factors which are difficult to control. Fungal plant pathogens, like Fusarium species, survive as a saprophyte in infected tissue like crop residues and endanger the health of the following crop by increasing the infection risk for specific plant diseases. In infected plant organs, these pathogens are able to produce mycotoxins. Mycotoxins like deoxynivalenol (DON) persist during storage, are heat resistant and of major concern for human and animal health after consumption of contaminated food and feed, respectively. Among fungivorous soil organisms, there are representatives of the soil fauna which are obviously antagonistic to a Fusarium infection and the contamination with mycotoxins. Specific members of the soil macro-, meso-, and microfauna provide a wide range of ecosystem services including the stimulation of decomposition processes which may result in the regulation of plant pathogens and the degradation of environmental contaminants. Investigations under laboratory conditions and in field were conducted to assess the functional linkage between soil faunal communities and plant pathogenic fungi (Fusarium culmorum). The aim was to examine if Fusarium biomass and the content of its mycotoxin DON decrease substantially in the presence of soil fauna (earthworms: Lumbricus terrestris, collembolans: Folsomia candida and nematodes: Aphelenchoides saprophilus) in a commercial cropping system managed with conservation tillage located in Northern Germany. The results of our investigations pointed out that the degradation performance of the introduced soil fauna must be considered as an important contribution to the biodegradation of fungal plant diseases and fungal-related contaminants. Different size classes within functional groups and the traits of keystone species appear to be significant for soil function and the provision of ecosystem services as in particular L. terrestris revealed to be the driver of the degradation process. Thus, earthworms contribute to a sustainable control of fungal pathogens like Fusarium and its mycotoxins in wheat straw by reducing the risk of plant diseases and environmental pollution as ecosystem services. Further studies are planned within the EU-project SoilMan under the BiodivERsA network. In context of the suppression of fungal plant pathogens and the detoxification of their mycotoxins by soil organisms in agroecosystems it is hypothesised that (1) processes related to services or disservices are induced and directed by abundance and activity of functional groups of soil biota; (2) dynamics and interaction in the soil biota community control ecosystem function and services.

EVALUATION OF SOIL VENTING APPLICATION

EPA Science Inventory

The ability of soil venting to inexpensively remove large amounts of volatile organic compounds (VOCs) from contaminated soils is well established. However, the time required using venting to remediate soils to low contaminant levels often required by state and federal regulators...

Long-term use of biosolids as organic fertilizers in agricultural soils: potentially toxic elements occurrence and mobility.

PubMed

Marguí, E; Iglesias, M; Camps, F; Sala, L; Hidalgo, M

2016-03-01

The presence of potentially toxic elements (PTEs) may hinder a more widespread application of biosolids in agriculture. At present, the European Directive 86/278/CEE limit the total concentrations of seven metals (Cu, Cr, Ni, Pb, Zn, Cd and Hg) in agricultural soils and in sewage sludges used as fertilizers but it has not taken into consideration the potential impacts of other emerging micropollutants that may be present in the biosolids as well as their mobility. The aim of this study was to evaluate the accumulation and mobility of 13 elements (including regulated metals and other inorganic species) in agricultural soils repeatedly amended with biosolids for 15 years. Firstly, three digestions programs using different acid mixtures were tested to evaluate the most accurate and efficient method for analysis of soil and sludge. Results demonstrated that sewage sludge application increased concentrations of Pb and Hg in soil, but values did not exceed the quality standard established by legislation. In addition, other elements (As, Co, Sb, Ag, Se and Mn) that at present are not regulated by the Spanish and European directives were identified in the sewage sludge, and significant differences were found between Ag content in soils amended with biosolids in comparison with control soils. This fact can be related to the increasing use of silver nanoparticles in consumer products due to their antibacterial properties. Results from the leaching tests show up that, in general, the mobility degree for both regulated and non-regulated elements in soils amended with biosolids was quite low (<10 %).

Exposure to dairy manure leads to greater antibiotic resistance and increased mass-specific respiration in soil microbial communities

PubMed Central

Avera, Bethany; Badgley, Brian; Barrett, John E.; Franklin, Josh; Knowlton, Katharine F.; Ray, Partha P.; Smitherman, Crystal

2017-01-01

Intensifying livestock production to meet the demands of a growing global population coincides with increases in both the administration of veterinary antibiotics and manure inputs to soils. These trends have the potential to increase antibiotic resistance in soil microbial communities. The effect of maintaining increased antibiotic resistance on soil microbial communities and the ecosystem processes they regulate is unknown. We compare soil microbial communities from paired reference and dairy manure-exposed sites across the USA. Given that manure exposure has been shown to elicit increased antibiotic resistance in soil microbial communities, we expect that manure-exposed sites will exhibit (i) compositionally different soil microbial communities, with shifts toward taxa known to exhibit resistance; (ii) greater abundance of antibiotic resistance genes; and (iii) corresponding maintenance of antibiotic resistance would lead to decreased microbial efficiency. We found that bacterial and fungal communities differed between reference and manure-exposed sites. Additionally, the β-lactam resistance gene ampC was 5.2-fold greater under manure exposure, potentially due to the use of cephalosporin antibiotics in dairy herds. Finally, ampC abundance was positively correlated with indicators of microbial stress, and microbial mass-specific respiration, which increased 2.1-fold under manure exposure. These findings demonstrate that the maintenance of antibiotic resistance associated with manure inputs alters soil microbial communities and ecosystem function. PMID:28356447

Exposure to dairy manure leads to greater antibiotic resistance and increased mass-specific respiration in soil microbial communities.

PubMed

Wepking, Carl; Avera, Bethany; Badgley, Brian; Barrett, John E; Franklin, Josh; Knowlton, Katharine F; Ray, Partha P; Smitherman, Crystal; Strickland, Michael S

2017-03-29

Intensifying livestock production to meet the demands of a growing global population coincides with increases in both the administration of veterinary antibiotics and manure inputs to soils. These trends have the potential to increase antibiotic resistance in soil microbial communities. The effect of maintaining increased antibiotic resistance on soil microbial communities and the ecosystem processes they regulate is unknown. We compare soil microbial communities from paired reference and dairy manure-exposed sites across the USA. Given that manure exposure has been shown to elicit increased antibiotic resistance in soil microbial communities, we expect that manure-exposed sites will exhibit (i) compositionally different soil microbial communities, with shifts toward taxa known to exhibit resistance; (ii) greater abundance of antibiotic resistance genes; and (iii) corresponding maintenance of antibiotic resistance would lead to decreased microbial efficiency. We found that bacterial and fungal communities differed between reference and manure-exposed sites. Additionally, the β-lactam resistance gene ampC was 5.2-fold greater under manure exposure, potentially due to the use of cephalosporin antibiotics in dairy herds. Finally, ampC abundance was positively correlated with indicators of microbial stress, and microbial mass-specific respiration, which increased 2.1-fold under manure exposure. These findings demonstrate that the maintenance of antibiotic resistance associated with manure inputs alters soil microbial communities and ecosystem function. © 2017 The Author(s).

Using a plant hormone and a thioligand to improve phytoremediation of Hg-contaminated soil from a petrochemical plant.

PubMed

Cassina, L; Tassi, E; Pedron, F; Petruzzelli, G; Ambrosini, P; Barbafieri, M

2012-09-15

Mercury-contaminated soils from a petrochemical plant in southern Italy were investigated to assess the phytoextraction efficiency of crop plants treated with the phytohormone, cytokinine (CK foliar treatment), and with the thioligand, ammonium thiosulfate (TS, soil application). Plant biomass, evapotranspiration, Hg uptake and distribution in plant tissues following treatment were compared. Results indicate the effectiveness of CK in increasing plant biomass and the evapotranspiration rate while TS treatment promoted soil Hg solubility and availability. The simultaneous addition of CK and TS treatments increased Hg uptake and translocation in both tested plants with up to 248 and 232% in Brassica juncea (Indian mustard) and Helianthus annuus (sunflower) respectively. B. juncea was more effective in Hg uptake, whereas H. annuus gave better response regarding plant biomass production. The effectiveness of the treatments was confirmed by the calculation of Hg phytoextraction and evaluation of labile-Hg residue in the soil after plant growth. In one growing cycle the plants subject to simultaneous CK and TS treatment significantly reduced labile-Hg pools that were characterized by the soil sequential extraction, but did not significantly affect the pseudototal metal content in the soil. Results support the use of plant growth regulators in the assisted phytoextraction process for Hg-contaminated soils. Copyright © 2012 Elsevier B.V. All rights reserved.

Biogeochemical effects of global change on U.S. National Parks

USGS Publications Warehouse

Herrmann, R.; Stottlemyer, R.; Zak, J.C.; Edmonds, R.L.; Van Miegroet, H.

2000-01-01

Federal parks and other public lands have unique mandates and rules regulating their use and conservation. Because of variation in their response to local, regional, and global-scale disturbance, development of mitigation strategies requires substantial research in the context of long-term inventory and monitoring. In 1982, the National Park Service began long-term, watershed-level studies in a series of national parks. The objective was to provide a more comprehensive database against which the effects of global change and other issues could be quantified. A subset of five sites in North Carolina, Texas, Washington, Michigan, and Alaska, is examined here. During the last 50 years, temperatures have declined at the southern sites and increased at the northern sites with the greatest increase in Alaska. Only the most southern site has shown an increase in precipitation amount. The net effect of these trends, especially for the most northern and southern sites, would likely be an increase in the growing season and especially the time soil processes could continue without moisture or temperature limitations. During the last 18 years, there were few trends in atmospheric ion inputs. The most evident was the decline in SO42- deposition. There were no significant relationships between ion input and stream water output. This finding suggests other factors as modification of precipitation or canopy throughfall by soil processes, hydrologic flow path, and snowmelt rates are major processes regulating stream water chemical outputs.

Change in soil fungal community structure driven by a decline in ectomycorrhizal fungi following a mountain pine beetle (Dendroctonus ponderosae) outbreak.

PubMed

Pec, Gregory J; Karst, Justine; Taylor, D Lee; Cigan, Paul W; Erbilgin, Nadir; Cooke, Janice E K; Simard, Suzanne W; Cahill, James F

2017-01-01

Western North American landscapes are rapidly being transformed by forest die-off caused by mountain pine beetle (Dendroctonus ponderosae), with implications for plant and soil communities. The mechanisms that drive changes in soil community structure, particularly for the highly prevalent ectomycorrhizal fungi in pine forests, are complex and intertwined. Critical to enhancing understanding will be disentangling the relative importance of host tree mortality from changes in soil chemistry following tree death. Here, we used a recent bark beetle outbreak in lodgepole pine (Pinus contorta) forests of western Canada to test whether the effects of tree mortality altered the richness and composition of belowground fungal communities, including ectomycorrhizal and saprotrophic fungi. We also determined the effects of environmental factors (i.e. soil nutrients, moisture, and phenolics) and geographical distance, both of which can influence the richness and composition of soil fungi. The richness of both groups of soil fungi declined and the overall composition was altered by beetle-induced tree mortality. Soil nutrients, soil phenolics and geographical distance influenced the community structure of soil fungi; however, the relative importance of these factors differed between ectomycorrhizal and saprotrophic fungi. The independent effects of tree mortality, soil phenolics and geographical distance influenced the community composition of ectomycorrhizal fungi, while the community composition of saprotrophic fungi was weakly but significantly correlated with the geographical distance of plots. Taken together, our results indicate that both deterministic and stochastic processes structure soil fungal communities following landscape-scale insect outbreaks and reflect the independent roles tree mortality, soil chemistry and geographical distance play in regulating the community composition of soil fungi. © 2016 The Authors. New Phytologist © 2016 New Phytologist Trust.

Application rate affects the degradation rate and hence emissions of chloropicrin in soil

USDA-ARS?s Scientific Manuscript database

Increasingly stringent regulations to control soil-air emissions of soil fumigants has led to much research effort aimed at reducing emission potential. Using laboratory soil columns, we aimed to investigate the relationship between chloropicrin (CP) application rate and its emissions from soil acro...

Moisture and vegetation controls on decadal-scale accrual of soil organic carbon and total nitrogen in restored grasslands

USGS Publications Warehouse

O'Brien, S. L.; Jastrow, J.D.; Grimley, D.A.; Gonzalez-Meler, M. A.

2010-01-01

Revitalization of degraded landscapes may provide sinks for rising atmospheric CO2, especially in reconstructed prairies where substantial belowground productivity is coupled with large soil organic carbon (SOC) deficits after many decades of cultivation. The restoration process also provides opportunities to study the often-elusive factors that regulate soil processes. Although the precise mechanisms that govern the rate of SOC accrual are unclear, factors such as soil moisture or vegetation type may influence the net accrual rate by affecting the balance between organic matter inputs and decomposition. A resampling approach was used to assess the control that soil moisture and plant community type each exert on SOC and total nitrogen (TN) accumulation in restored grasslands. Five plots that varied in drainage were sampled at least four times over two decades to assess SOC, TN, and C4- and C3-derived C. We found that higher long-term soil moisture, characterized by low soil magnetic susceptibility, promoted SOC and TN accrual, with twice the SOC and three times the TN gain in seasonally saturated prairies compared with mesic prairies. Vegetation also influenced SOC and TN recovery, as accrual was faster in the prairies compared with C3-only grassland, and C4-derived C accrual correlated strongly to total SOC accrual but C3-C did not. High SOC accumulation at the surface (0-10 cm) combined with losses at depth (10-20 cm) suggested these soils are recovering the highly stratified profiles typical of remnant prairies. Our results suggest that local hydrology and plant community are critical drivers of SOC and TN recovery in restored grasslands. Because these factors and the way they affect SOC are susceptible to modification by climate change, we contend that predictions of the C-sequestration performance of restored grasslands must account for projected climatic changes on both soil moisture and the seasonal productivity of C4 and C3 plants. ?? 2009 Blackwell Publishing Ltd.

Evapotranspiration of a Mid-Rotation Loblolly Pine Plantation and a Recently Harvested Stands on the Coastal Plain of North Carolina, U.S.A.

Treesearch

W. Cao; Ge Sun; Steve G. McNulty; J. Chen; A. Noormets; R. W. Skaggs; Devendra M. Amatya

2006-01-01

Evapotranspiration (ET) is the primary component of the forest hydrologic cycle, which includes plant transpiration, canopy rainfall interception, and soil evaporation. Quantifying ET processes and potential biophysical regulations is needed for assessing forest water management options. Loblolly pines are widely planted in the coastal plain of the Southeastern US, but...

Organic Matter and Water Addition Enhance Soil Respiration in an Arid Region

PubMed Central

Lai, Liming; Wang, Jianjian; Tian, Yuan; Zhao, Xuechun; Jiang, Lianhe; Chen, Xi; Gao, Yong; Wang, Shaoming; Zheng, Yuanrun

2013-01-01

Climate change is generally predicted to increase net primary production, which could lead to additional C input to soil. In arid central Asia, precipitation has increased and is predicted to increase further. To assess the combined effects of these changes on soil CO2 efflux in arid land, a two factorial manipulation experiment in the shrubland of an arid region in northwest China was conducted. The experiment used a nested design with fresh organic matter and water as the two controlled parameters. It was found that both fresh organic matter and water enhanced soil respiration, and there was a synergistic effect of these two treatments on soil respiration increase. Water addition not only enhanced soil C emission, but also regulated soil C sequestration by fresh organic matter addition. The results indicated that the soil CO2 flux of the shrubland is likely to increase with climate change, and precipitation played a dominant role in regulating soil C balance in the shrubland of an arid region. PMID:24204907

Molecular regulation of aluminum resistance and sulfur nutrition during root growth.

PubMed

Alarcón-Poblete, Edith; Inostroza-Blancheteau, Claudio; Alberdi, Miren; Rengel, Zed; Reyes-Díaz, Marjorie

2018-01-01

Aluminum toxicity and sulfate deprivation both regulate microRNA395 expression, repressing its low-affinity sulfate transporter ( SULTR2;1 ) target. Sulfate deprivation also induces the high-affinity sulfate transporter gene ( SULTR12 ), allowing enhanced sulfate uptake. Few studies about the relationships between sulfate, a plant nutrient, and aluminum, a toxic ion, are available; hence, the molecular and physiological processes underpinning this interaction are poorly understood. The Al-sulfate interaction occurs in acidic soils, whereby relatively high concentrations of trivalent toxic aluminum (Al 3+ ) may hamper root growth, limiting uptake of nutrients, including sulfur (S). On the other side, Al 3+ may be detoxified by complexation with sulfate in the acid soil solution as well as in the root-cell vacuoles. In this review, we focus on recent insights into the mechanisms governing plant responses to Al toxicity and its relationship with sulfur nutrition, emphasizing the role of phytohormones, microRNAs, and ion transporters in higher plants. It is known that Al 3+ disturbs gene expression and enzymes involved in biosynthesis of S-containing cysteine in root cells. On the other hand, Al 3+ may induce ethylene biosynthesis, enhance reactive oxygen species production, alter phytohormone transport, trigger root growth inhibition and promote sulfate uptake under S deficiency. MicroRNA395, regulated by both Al toxicity and sulfate deprivation, represses its low-affinity Sulfate Transporter 2;1 (SULTR2;1) target. In addition, sulfate deprivation induces High Affinity Sulfate Transporters (HAST; SULTR1;2), improving sulfate uptake from low-sulfate soil solutions. Identification of new microRNAs and cloning of their target genes are necessary for a better understanding of the role of molecular regulation of plant resistance to Al stress and sulfate deprivation.

The regulation of methane oxidation in soil

NASA Technical Reports Server (NTRS)

Mancinelli, R. L.

1995-01-01

The atmospheric concentration of methane, a greenhouse gas, has more than doubled during the past 200 years. Consequently, identifying the factors influencing the flux of methane into the atmosphere is becoming increasingly important. Methanotrophs, microaerophilic organisms widespread in aerobic soils and sediments, oxidize methane to derive energy and carbon for biomass. In so doing, they play an important role in mitigating the flux of methane into the atmosphere. Several physico-chemical factors influence rates of methane oxidation in soil, including soil diffusivity; water potential; and levels of oxygen, methane, ammonium, nitrate, nitrite, and copper. Most of these factors exert their influence through interactions with methane monooxygenase (MMO), the enzyme that catalyzes the reaction converting methane to methanol, the first step in methane oxidation. Although biological factors such as competition and predation undoubtedly play a role in regulating the methanotroph population in soils, and thereby limit the amount of methane consumed by methanotrophs, the significance of these factors is unknown. Obtaining a better understanding of the ecology of methanotrophs will help elucidate the mechanisms that regulate soil methane oxidation.

Soil Respiration in Semiarid Temperate Grasslands under Various Land Management

PubMed Central

Hou, Xiangyang; Schellenberg, Michael P.

2016-01-01

Soil respiration, a major component of the global carbon cycle, is significantly influenced by land management practices. Grasslands are potentially a major sink for carbon, but can also be a source. Here, we investigated the potential effect of land management (grazing, clipping, and ungrazed enclosures) on soil respiration in the semiarid grassland of northern China. Our results showed the mean soil respiration was significantly higher under enclosures (2.17μmol.m−2.s−1) and clipping (2.06μmol.m−2.s−1) than under grazing (1.65μmol.m−2.s−1) over the three growing seasons. The high rates of soil respiration under enclosure and clipping were associated with the higher belowground net primary productivity (BNPP). Our analyses indicated that soil respiration was primarily related to BNPP under grazing, to soil water content under clipping. Using structural equation models, we found that soil water content, aboveground net primary productivity (ANPP) and BNPP regulated soil respiration, with soil water content as the predominant factor. Our findings highlight that management-induced changes in abiotic (soil temperature and soil water content) and biotic (ANPP and BNPP) factors regulate soil respiration in the semiarid temperate grassland of northern China. PMID:26808376

Nitrogen nutrition of poplar trees.

PubMed

Rennenberg, H; Wildhagen, H; Ehlting, B

2010-03-01

Many forest ecosystems have evolved at sites with growth-limiting nitrogen (N) availability, low N input from external sources and high ecosystem internal cycling of N. By contrast, many poplar species are frequent constituents of floodplain forests where they are exposed to a significant ecosystem external supply of N, mainly nitrate, in the moving water table. Therefore, nitrate is much more important for N nutrition of these poplar species than for many other tree species. We summarise current knowledge of nitrate uptake and its regulation by tree internal signals, as well as acquisition of ammonium and organic N from the soil. Unlike herbaceous plants, N nutrition of trees is sustained by seasonal, tree internal cycling. Recent advances in the understanding of seasonal storage and mobilisation in poplar bark and regulation of these processes by temperature and daylength are addressed. To explore consequences of global climate change on N nutrition of poplar trees, responses of N uptake and metabolism to increased atmospheric CO(2) and O(3) concentrations, increased air and soil temperatures, drought and salt stress are highlighted.

Big and small: menisci in soil pores affect water pressures, dynamics of groundwater levels, and catchment-scale average matric potentials

NASA Astrophysics Data System (ADS)

de Rooij, G. H.

2010-09-01

Soil water is confined behind the menisci of its water-air interface. Catchment-scale fluxes (groundwater recharge, evaporation, transpiration, precipitation, etc.) affect the matric potential, and thereby the interface curvature and the configuration of the phases. In turn, these affect the fluxes (except precipitation), creating feedbacks between pore-scale and catchment-scale processes. Tracking pore-scale processes beyond the Darcy scale is not feasible. Instead, for a simplified system based on the classical Darcy's Law and Laplace-Young Law we i) clarify how menisci transfer pressure from the atmosphere to the soil water, ii) examine large-scale phenomena arising from pore-scale processes, and iii) analyze the relationship between average meniscus curvature and average matric potential. In stagnant water, changing the gravitational potential or the curvature of the air-water interface changes the pressure throughout the water. Adding small amounts of water can thus profoundly affect water pressures in a much larger volume. The pressure-regulating effect of the interface curvature showcases the meniscus as a pressure port that transfers the atmospheric pressure to the water with an offset directly proportional to its curvature. This property causes an extremely rapid rise of phreatic levels in soils once the capillary fringe extends to the soil surface and the menisci flatten. For large bodies of subsurface water, the curvature and vertical position of any meniscus quantify the uniform hydraulic potential under hydrostatic equilibrium. During unit-gradient flow, the matric potential corresponding to the mean curvature of the menisci should provide a good approximation of the intrinsic phase average of the matric potential.

Ammonium sorption and ammonia inhibition of nitrite-oxidizing bacteria explain contrasting soil N2O production

PubMed Central

Venterea, Rodney T.; Clough, Timothy J.; Coulter, Jeffrey A.; Breuillin-Sessoms, Florence

2015-01-01

Better understanding of process controls over nitrous oxide (N2O) production in urine-impacted ‘hot spots’ and fertilizer bands is needed to improve mitigation strategies and emission models. Following amendment with bovine (Bos taurus) urine (Bu) or urea (Ur), we measured inorganic N, pH, N2O, and genes associated with nitrification in two soils (‘L’ and ‘W’) having similar texture, pH, C, and C/N ratio. Solution-phase ammonia (slNH3) was also calculated accounting for non-linear ammonium (NH4+) sorption capacities (ASC). Soil W displayed greater nitrification rates and nitrate (NO3−) levels than soil L, but was more resistant to nitrite (NO2−) accumulation and produced two to ten times less N2O than soil L. Genes associated with NO2− oxidation (nxrA) increased substantially in soil W but remained static in soil L. Soil NO2− was strongly correlated with N2O production, and cumulative (c-) slNH3 explained 87% of the variance in c-NO2−. Differences between soils were explained by greater slNH3 in soil L which inhibited NO2− oxidization leading to greater NO2− levels and N2O production. This is the first study to correlate the dynamics of soil slNH3, NO2−, N2O and nitrifier genes, and the first to show how ASC can regulate NO2− levels and N2O production. PMID:26179972

Breaking ground: Pedological, geological, and ecological implications of soil bioturbation

NASA Astrophysics Data System (ADS)

Wilkinson, Marshall T.; Richards, Paul J.; Humphreys, Geoff S.

Soil and its biota are fundamental components of the "Critical Zone": Earth's living skin that most directly sustains life. Within that zone, geologically-rapid soil and saprolite displacement by biota, particularly invertebrate meso- and macrofauna, affects a large proportion of Earth's soils. This was first recognised by late-19th century observers, on both sides of the Atlantic Ocean, who regarded bioturbation as fundamental to soil formation. Throughout much of the 20th century, however, the agronomical focus of soil scientists and the dominant paradigm of landscape evolution relegated bioturbation. As a result, many aspects of bioturbation are still not widely appreciated. Only in the last few decades has a re-evaluation commenced, in a range of disciplines. Primary effects of bioturbation, which we quantify herein, include soil production from saprolite, the formation of surface mounds, soil burial, and downslope transport. Rates of bioturbation can be as rapid as sustained maximum rates of tectonic uplift. In concert with surface geomorphic processes, bioturbation alters fundamental properties of soil, including particle-size distribution, porosity, the content of carbon and other nutrients, and creep flux rate. The precise influence of biotic mixing is regulated by its depth function. Earth's incredibly diverse soil biota also perform a number of functions, at a range of spatial and temporal scales, that extend beyond soil to landscape evolution, ecosystem engineering, niche construction, and carbon cycling. Understanding these linkages—which have operated since the evolution of trees in the Devonian Period—is of growing importance as we seek a fuller picture of Earth's history to predict and manage its future.

Microbial diversity of vermicompost bacteria that exhibit useful agricultural traits and waste management potential.

PubMed

Pathma, Jayakumar; Sakthivel, Natarajan

2012-01-01

Vermicomposting is a non-thermophilic, boioxidative process that involves earthworms and associated microbes. This biological organic waste decomposition process yields the biofertilizer namely the vermicompost. Vermicompost is a finely divided, peat like material with high porosity, good aeration, drainage, water holding capacity, microbial activity, excellent nutrient status and buffering capacity thereby resulting the required physiochemical characters congenial for soil fertility and plant growth. Vermicompost enhances soil biodiversity by promoting the beneficial microbes which inturn enhances plant growth directly by production of plant growth-regulating hormones and enzymes and indirectly by controlling plant pathogens, nematodes and other pests, thereby enhancing plant health and minimizing the yield loss. Due to its innate biological, biochemical and physiochemical properties, vermicompost may be used to promote sustainable agriculture and also for the safe management of agricultural, industrial, domestic and hospital wastes which may otherwise pose serious threat to life and environment.

Carbon cycle confidence and uncertainty: Exploring variation among soil biogeochemical models

DOE PAGES

Wieder, William R.; Hartman, Melannie D.; Sulman, Benjamin N.; ...

2017-11-09

Emerging insights into factors responsible for soil organic matter stabilization and decomposition are being applied in a variety of contexts, but new tools are needed to facilitate the understanding, evaluation, and improvement of soil biogeochemical theory and models at regional to global scales. To isolate the effects of model structural uncertainty on the global distribution of soil carbon stocks and turnover times we developed a soil biogeochemical testbed that forces three different soil models with consistent climate and plant productivity inputs. The models tested here include a first-order, microbial implicit approach (CASA-CNP), and two recently developed microbially explicit models thatmore » can be run at global scales (MIMICS and CORPSE). When forced with common environmental drivers, the soil models generated similar estimates of initial soil carbon stocks (roughly 1,400 Pg C globally, 0–100 cm), but each model shows a different functional relationship between mean annual temperature and inferred turnover times. Subsequently, the models made divergent projections about the fate of these soil carbon stocks over the 20th century, with models either gaining or losing over 20 Pg C globally between 1901 and 2010. Single-forcing experiments with changed inputs, tem- perature, and moisture suggest that uncertainty associated with freeze-thaw processes as well as soil textural effects on soil carbon stabilization were larger than direct temper- ature uncertainties among models. Finally, the models generated distinct projections about the timing and magnitude of seasonal heterotrophic respiration rates, again reflecting structural uncertainties that were related to environmental sensitivities and assumptions about physicochemical stabilization of soil organic matter. Here, by providing a computationally tractable and numerically consistent framework to evaluate models we aim to better understand uncertainties among models and generate insights about fac- tors regulating the turnover of soil organic matter.« less

Carbon cycle confidence and uncertainty: Exploring variation among soil biogeochemical models

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wieder, William R.; Hartman, Melannie D.; Sulman, Benjamin N.

Emerging insights into factors responsible for soil organic matter stabilization and decomposition are being applied in a variety of contexts, but new tools are needed to facilitate the understanding, evaluation, and improvement of soil biogeochemical theory and models at regional to global scales. To isolate the effects of model structural uncertainty on the global distribution of soil carbon stocks and turnover times we developed a soil biogeochemical testbed that forces three different soil models with consistent climate and plant productivity inputs. The models tested here include a first-order, microbial implicit approach (CASA-CNP), and two recently developed microbially explicit models thatmore » can be run at global scales (MIMICS and CORPSE). When forced with common environmental drivers, the soil models generated similar estimates of initial soil carbon stocks (roughly 1,400 Pg C globally, 0–100 cm), but each model shows a different functional relationship between mean annual temperature and inferred turnover times. Subsequently, the models made divergent projections about the fate of these soil carbon stocks over the 20th century, with models either gaining or losing over 20 Pg C globally between 1901 and 2010. Single-forcing experiments with changed inputs, tem- perature, and moisture suggest that uncertainty associated with freeze-thaw processes as well as soil textural effects on soil carbon stabilization were larger than direct temper- ature uncertainties among models. Finally, the models generated distinct projections about the timing and magnitude of seasonal heterotrophic respiration rates, again reflecting structural uncertainties that were related to environmental sensitivities and assumptions about physicochemical stabilization of soil organic matter. Here, by providing a computationally tractable and numerically consistent framework to evaluate models we aim to better understand uncertainties among models and generate insights about fac- tors regulating the turnover of soil organic matter.« less

The contribution of the European Society for Soil Conservation (ESSC) to scientific knowledge, education and sustainability

NASA Astrophysics Data System (ADS)

Dazzi, Carmelo; Fullen, Michael A.; Costantini, Edoardo A. C.; Theocharopoulos, Sid; Rickson, Jane; Kasparinskis, Raimonds; Lo Papa, Giuseppe; Peres, Guenola; Sholten, Thomas; Kertész, Adam; Vasenev, Ivan; Dumitru, Mihail; Cornelis, Wim; Rubio, José L.

2017-04-01

Soil is an integral component of the global environmental system that supports the quality and diversity of terrestrial life on Earth. Therefore, it is vital to consider the processes and impacts of soil degradation on society, especially on the provision of environmental goods and services, including food security and climate change mitigation and adaptation. Scientific societies devoted to Soil Science play significant roles in promoting soil security by advancing scientific knowledge, education and environmental sustainability. The European Society for Soil Conservation (ESSC) was founded in Ghent (Belgium) on 4 November 1988 by a group of 23 researchers from several European countries. It is an interdisciplinary, non-political association with over 500 members in 56 countries. The ESSC produces and distributes a hardcopy Newsletter twice a year and maintains both a website and Facebook page: http://www.soilconservation.eu/ https://www.facebook.com/European-Society-for-Soil-Conservation-ESSC-100528363448094/ The ESSC aims to: • Support research on soil degradation, soil protection and soil and water conservation. • Provide a network for the exchange of knowledge about soil degradation processes and soil conservation research and practises. • Produce publications on major issues relating to soil degradation and soil and water conservation. • Advise regulators and policy-makers on soil issues, especially soil degradation, protection and conservation. The ESSC held its First International Congress in Silsoe (UK) in 1992. Further International Congresses were held in Munich (1996), Valencia (2000), Budapest (2004), Palermo (2007), Thessaloniki (2011) and Moscow (2015). The Eighth International Congress will be held in Lleida (Spain) in June 2017: http://www.consowalleida2017.com/ Interspersed between these international congresses, the ESSC organizes annual international conferences on specific topics. These include Imola, Italy (Biogeochemical Processes at Air-Soil-Water Interfaces and Environmental Protection) in 2015 and Cluj-Napoca, Romania (Soil: Our Common Future) in 2016. Since its inception, the Society has made significant advances, including developing a strong and growing global network of soil scholars. The ESSC honours major individual contributions to soil conservation through two awards made every four years at its Congresses, namely: • The 'Gerold Richter Award,' awarded to a person who has, over their career, made significant and internationally recognized contributions to the investigation and/or promotion of soil conservation in Europe. • The 'Young Person's Award' is presented to a member of the Society, aged 40 years or less, who over the previous four years has made important contributions to soil conservation in Europe through research, practise, policy-making or another relevant activity. The ESSC provides grants to young members to attend its conferences and promotes the organization of scientific meetings, soil conservation research, and co-operation between numerous institutions and individuals on soil conservation initiatives. The societal challenges that can be addressed through better soil protection, as well as developing new knowledge and scientific approaches to soil protection and sustainable management, mean the ESSC embraces the on-going development, application, review and criticism of highly innovative scientific methods for soil conservation. It is in this context that the ESSC analyses and publicizes the roles and functions of soil in natural and human-modified systems and the functional optimization of soils to ensure sustainable environmental protection.

Do genetically modified plants impact arbuscular mycorrhizal fungi?

PubMed

Liu, Wenke

2010-02-01

The development and use of genetically modified plants (GMPs), as well as their ecological risks have been a topic of considerable public debate since they were first released in 1996. To date, no consistent conclusions have been drawn dealing with ecological risks on soil microorganisms of GMPs for the present incompatible empirical data. Arbuscular mycorrhizal fungi (AMF), important in regulating aboveground and underground processes in ecosystems, are the most crucial soil microbial community worthy of being monitored in ecological risks assessment of GMPs for their sensitivity to environmental alterations (plant, soil, climatic factor etc.). Based on current data, we suggest that there is a temporal-spatial relevance between expression and rhizosphere secretion of anti-disease and insecticidal proteins (e.g., Bt-Bacillus thuringiensis toxins) in and outer roots, and AMF intraradical and extraradical growth and development. Therefore, taking Bt transgenic plants (BTPs) for example, Bt insecticidal proteins constitutive expression and rhizosphere release during cultivation of BTPs may damage some critical steps of the AMF symbiotic development. More important, these processes of BTPs coincide with the entire life cycle of AMF annually, which may impact the diversity of AMF after long-term cultivation period. It is proposed that interactions between GMPs and AMF should be preferentially studied as an indicator for ecological impacts of GMPs on soil microbial communities. In this review, advances in impacts of GMPs on AMF and the effect mechanisms were summarized, highlighting the possible ecological implications of interactions between GMPs and AMF in soil ecosystems.

Modeling the hydrophysical soil properties as a part of self-regulated flood dams projection in gis-environment for sustainable urban development

NASA Astrophysics Data System (ADS)

Nikonorov, Aleksandr; Terleev, Vitaly; Badenko, Vladimir; Mirschel, Wilfried; Abakumov, Evgeny; Ginevsky, Roman; Lazarev, Viktor; Togo, Issa; Volkova, Yulia; Melnichuk, Aleksandr; Dunaieva, Ielizaveta; Akimov, Luka

2017-10-01

The problem of flood protection measures are considered in the paper. The regulation of river flow by the system of Self-Regulated Flood Dams (SRFD) is analyzed. The method of SRFD modeling in GIS environment is proposed. The question of the ecological aspect of the SRFD management is considered based on the hydrophysical properties of the soil. The improved Mualem-Van Genuchted method is proposed for the evaluation of the possible SRFD location influence on the soil of flooded territory - the temporary reservoirs. The importance and utility of the proposed complex method is stated.

Investing in soils as an infrastructure to maintain and enhance food water and carbon services

NASA Astrophysics Data System (ADS)

Davies, Jessica

2017-04-01

Soils are a life support system for global society and our planet. In addition to providing the vast majority of our food; soils regulate water quality and quantity reducing the risk of floods, droughts and pollution; and as the largest store of carbon in the earth system they are critical to climate change. By providing these multiple essential services, soils act a natural form of infrastructure that is critical to supporting both rural and urban communities and economies. Can natural infrastructure and natural capital concepts be used to motivate and enable investment and regulation of soils for purposes such as soil carbon sequestration? What scientific knowledge and tools would we need to support soil infrastructure decision making - in policy arenas and elsewhere? This poster will present progress from a new research project supported by the UK research council (EP/N030532/1) that addresses these questions.

Electron acceptor-based regulation of microbial greenhouse gas production from thawing permafrost

NASA Astrophysics Data System (ADS)

Bak, Ebbe; Jones, Eleanor; Yde, Jacob; Hodson, Andy; Mallon, Gunnar; Fisnter, Kai

2017-04-01

Permafrost contains about 35% of the global soil organic carbon (0-3 m depth). As a consequence of global warming, the active layer thickness is steadily increasing and its organic carbon is becoming available for degradation, causing a concomitant release of CO2 and CH4. The climate forcing feedbacks of permafrost thaw are determined by the rate of organic carbon degradation and to which degree it is released as CO2 or CH4. Methane is produced under anoxic conditions, but the factors that regulate its production are poorly constrained. In this study, we investigate how CH4 production is influenced by the presence of competing anaerobic processes with focus on the role of iron and sulfate reduction. We have collected permafrost cores to 2.2 meters depth from three different lowland sites in Adventdalen on Svalbard. From these cores, we have prepared anoxic batch incubation for each 25 cm depth interval and followed the production of CO2 and CH4 as well as the iron and sulfate reduction. This approach allows us to monitor the rate of the CO2 and CH4 production as well as to investigate the correlation between CH4 production and competing anaerobic respiration processes in the active layer as well in the permafrost. These investigations are accompanied by characterization of the carbon, iron and sulfate content in the soil and will be followed by characterization of the microbial community structure. The aim of this study is to get a better understanding of how the availability of sulfate and iron and the microbial community structure regulate the production of CO2 and CH4 in thawing permafrost, and to elucidate how the rate of the organic carbon degradation changes with depth in permafrost-affected soils. This study improves our understanding of climate feedback mechanisms operating during permafrost thaw.

7 CFR 330.300a - Administrative instructions exempting soil from parts of Canada from certain restrictions.

Code of Federal Regulations, 2014 CFR

2014-01-01

... 7 Agriculture 5 2014-01-01 2014-01-01 false Administrative instructions exempting soil from parts... FEDERAL PLANT PEST REGULATIONS; GENERAL; PLANT PESTS; SOIL, STONE, AND QUARRY PRODUCTS; GARBAGE Movement of Soil, Stone, And Quarry Products § 330.300a Administrative instructions exempting soil from parts...

7 CFR 330.300a - Administrative instructions exempting soil from parts of Canada from certain restrictions.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 7 Agriculture 5 2010-01-01 2010-01-01 false Administrative instructions exempting soil from parts... FEDERAL PLANT PEST REGULATIONS; GENERAL; PLANT PESTS; SOIL, STONE, AND QUARRY PRODUCTS; GARBAGE Movement of Soil, Stone, And Quarry Products § 330.300a Administrative instructions exempting soil from parts...

7 CFR 330.300a - Administrative instructions exempting soil from parts of Canada from certain restrictions.

Code of Federal Regulations, 2013 CFR

2013-01-01

... 7 Agriculture 5 2013-01-01 2013-01-01 false Administrative instructions exempting soil from parts... FEDERAL PLANT PEST REGULATIONS; GENERAL; PLANT PESTS; SOIL, STONE, AND QUARRY PRODUCTS; GARBAGE Movement of Soil, Stone, And Quarry Products § 330.300a Administrative instructions exempting soil from parts...

7 CFR 330.300a - Administrative instructions exempting soil from parts of Canada from certain restrictions.

Code of Federal Regulations, 2011 CFR

2011-01-01

... 7 Agriculture 5 2011-01-01 2011-01-01 false Administrative instructions exempting soil from parts... FEDERAL PLANT PEST REGULATIONS; GENERAL; PLANT PESTS; SOIL, STONE, AND QUARRY PRODUCTS; GARBAGE Movement of Soil, Stone, And Quarry Products § 330.300a Administrative instructions exempting soil from parts...

7 CFR 330.300a - Administrative instructions exempting soil from parts of Canada from certain restrictions.

Code of Federal Regulations, 2012 CFR

2012-01-01

... 7 Agriculture 5 2012-01-01 2012-01-01 false Administrative instructions exempting soil from parts... FEDERAL PLANT PEST REGULATIONS; GENERAL; PLANT PESTS; SOIL, STONE, AND QUARRY PRODUCTS; GARBAGE Movement of Soil, Stone, And Quarry Products § 330.300a Administrative instructions exempting soil from parts...

Roles of chemical signals in regulation of the adaptive responses to iron deficiency.

PubMed

Liu, Xing Xing; He, Xiao Lin; Jin, Chong Wei

2016-05-03

Iron is an essential micronutrient for plants but is not readily accessible in most calcareous soils. Although the adaptive responses of plants to iron deficiency have been well documented, the signals involved in the regulatory cascade leading to their activation are not well understood to date. Recent studies revealed that chemical compounds, including sucrose, auxin, ethylene and nitric oxide, positively regulated the Fe-deficiency-induced Fe uptake processes in a cooperative manner. Nevertheless, cytokinins, jasmonate and abscisic acid were shown to act as negative signals in transmitting the iron deficiency information. The present mini review is to briefly address the roles of chemical signals in regulation of the adaptive responses to iron deficiency based on the literatures published in recent years.

Ecohydrology of Lodgepole Pine Forests: Connecting Transpiration to Subsurface Flow Paths and Storage within a Subalpine Catchment

NASA Astrophysics Data System (ADS)

Byers, A.; Harpold, A. A.; Barnard, H. R.

2011-12-01

The hydrologic cycle plays a central role in regulating ecosystem structure and function. Linked studies of both subsurface and aboveground processes are needed to improve understanding of ecosystem changes that could result from climate change and disturbance in Colorado's subalpine forests. Here, we present data from plots dominated by lodgepole pine (Pinus contorta) at the Niwot Ridge LTER site on the Colorado Front Range that improves the process-level understanding of the source and fate of water between subsurface storage and plant uptake. This study utilized event-based sampling during the 2011 growing season to investigate a paradox between water sources and rooting depth in lodgepole pine. Findings from Niwot Ridge have shown that lodgepole, typically believed to be a shallow-rooted species, appear to be strongly dependent on water from snowmelt for the entire growing season. These results suggested that conifer species were accessing water from deeper in the soil than summer monsoon rain typically penetrated. In our study, the relationship between precipitation event size and depth of infiltration on a seasonal and event basis, the effective rooting depth of lodgepole pine, and hysteretic responses of transpiration to soil moisture over a growing season were examined using measurements of tree physiological processes (sap flux and water stress) and hydrological parameters (precipitation, soil moisture) as well as stable water isotope composition of xylem water, mobile and immobile soil water, snow, precipitation, and stream water. Analysis of data shows that soil moisture in deep layers (60 and 70 cm) responds to large summer rain events of 0.7 mm and greater, and that lodgepole sap flux increases by 15-30% within 24 hours of monsoon events and decreases over 72 hours or until subsequent rain. Water isotope analysis will further elucidate the source and event response of these trees. This research helps us understand whether processes known to occur in Mediterranean climate regimes, such as the "two water worlds" theory that tightly bound water in soil is available to trees but is separate from mobile water that drains to streams, also applies to continental mountainous climates. Furthermore, understanding the mediation of hydrologic processes by trees like lodgepole pine will improve modeling of hydrological and ecological processes and knowledge of forest susceptibility to climate change and other disturbance impacts.

Enhanced greenhouse gas emissions from the Arctic with experimental warming

NASA Astrophysics Data System (ADS)

Voigt, Carolina; Lamprecht, Richard E.; Marushchak, Maija E.; Lind, Saara E.; Novakovskiy, Alexander; Aurela, Mika; Martikainen, Pertti J.; Biasi, Christina

2017-04-01

Temperatures in the Arctic are projected to increase more rapidly than in lower latitudes. With temperature being a key factor for regulating biogeochemical processes in ecosystems, even a subtle temperature increase might promote the release of greenhouse gases (GHGs) to the atmosphere. Usually, carbon dioxide (CO2) and methane (CH4) are the GHGs dominating the climatic impact of tundra. However, bare, patterned ground features in the Arctic have recently been identified as hot spots for nitrous oxide (N2O). N2O is a potent greenhouse gas, which is almost 300 times more effective in its global warming potential than CO2; but studies on arctic N2O fluxes are rare. In this study we examined the impact of temperature increase on the seasonal GHG balance of all three important GHGs (CO2, CH4 and N2O) from three tundra surface types (vegetated peat soils, unvegetated peat soils, upland mineral soils) in the Russian Arctic (67˚ 03' N 62˚ 55' E), during the course of two growing seasons. We deployed open-top chambers (OTCs), inducing air and soil surface warming, thus mimicking predicted warming scenarios. We combined detailed CO2, CH4 and N2O flux studies with concentration measurements of these gases within the soil profile down to the active layer-permafrost interface, and complemented these GHG measurements with detailed soil nutrient (nitrate and ammonium) and dissolved organic carbon (DOC) measurements in the soil pore water profile. In our study, gentle air warming (˜1.0 ˚ C) increased the seasonal GHG release of all dominant surface types: the GHG budget of vegetated peat and mineral soils, which together cover more than 80 % of the land area in our study region, shifted from a sink to a source of -300 to 144 g CO2-eq m-2 and from -198 to 105 g CO2-eq m-2, respectively. While the positive warming response was governed by CO2, we provide here the first in situ evidence that warming increases arctic N2O emissions: Warming did not only enhance N2O emissions from the known arctic N2O hot spots (bare peat soils; maximum seasonal release with warming: 87 mg N2O m-2), but also from the vegetated peat surfaces, not emitting N2O under present climate. These surfaces showed signs of a hampered plant growth, leading to reduced soil N uptake with warming, indicating that plants are regulating arctic N2O emissions. The warming treatment was limited to temperature of air and upper soil surface, and did not alter thaw depth. Nonetheless, we observed a clear increase of all three GHGs deep in the soil profile, and attribute this to downward leaching of labile organic substances from the surface soil and/or plants, fueling microbial activity at depth. Our study thus highlights the tight interlinkage between the surface soil, vegetation, and deeper soil layers, which could lead to losses of all three GHGs, including N2O, with subtle temperature increase. We therefore emphasize that indirect effects caused by warming, such as leaching processes, as well as arctic N2O emissions, need to be taken into account when attempting to project feedbacks between the arctic and the global climate system.

Controls of nitrogen cycling evaluated along a well-characterized climate gradient.

PubMed

von Sperber, Christian; Chadwick, Oliver A; Casciotti, Karen L; Peay, Kabir G; Francis, Christopher A; Kim, Amy E; Vitousek, Peter M

2017-04-01

The supply of nitrogen (N) constrains primary productivity in many ecosystems, raising the question "what controls the availability and cycling of N"? As a step toward answering this question, we evaluated N cycling processes and aspects of their regulation on a climate gradient on Kohala Volcano, Hawaii, USA. The gradient extends from sites receiving <300 mm/yr of rain to those receiving >3,000 mm/yr, and the pedology and dynamics of rock-derived nutrients in soils on the gradient are well understood. In particular, there is a soil process domain at intermediate rainfall within which ongoing weathering and biological uplift have enriched total and available pools of rock-derived nutrients substantially; sites at higher rainfall than this domain are acid and infertile as a consequence of depletion of rock-derived nutrients, while sites at lower rainfall are unproductive and subject to wind erosion. We found elevated rates of potential net N mineralization in the domain where rock-derived nutrients are enriched. Higher-rainfall sites have low rates of potential net N mineralization and high rates of microbial N immobilization, despite relatively high rates of gross N mineralization. Lower-rainfall sites have moderately low potential net N mineralization, relatively low rates of gross N mineralization, and rates of microbial N immobilization sufficient to sequester almost all the mineral N produced. Bulk soil δ 15 N also varied along the gradient, from +4‰ at high rainfall sites to +14‰ at low rainfall sites, indicating differences in the sources and dynamics of soil N. Our analysis shows that there is a strong association between N cycling and soil process domains that are defined using soil characteristics independent of N along this gradient, and that short-term controls of N cycling can be understood in terms of the supply of and demand for N. © 2017 by the Ecological Society of America.

Plastic Bag Derived-Microplastics as a Vector for Metal Exposure in Terrestrial Invertebrates.

PubMed

Hodson, Mark E; Duffus-Hodson, Calum A; Clark, Andy; Prendergast-Miller, Miranda T; Thorpe, Karen L

2017-04-18

Microplastics are widespread contaminants in terrestrial environments but comparatively little is known about interactions between microplastics and common terrestrial contaminants such as zinc (Zn). In adsorption experiments fragmented HDPE bags c. one mm 2 in size showed similar sorption characteristics to soil. However, when present in combination with soil, concentrations of adsorbed Zn on a per mass basis were over an order of magnitude lower on microplastics. Desorption of the Zn was minimal from both microplastics and soil in synthetic soil solution (0.01 M CaCl 2 ), but in synthetic earthworm guts desorption was higher from microplastics (40-60%) than soil (2-15%), suggesting microplastics could increase Zn bioavailability. Individual Lumbricus terrestris earthworms exposed for 28 days in mesocosms of 260 g moist soil containing 0.35 wt % of Zn-bearing microplastic (236-4505 mg kg -1 ) ingested the microplastics, but there was no evidence of Zn accumulation, mortality, or weight change. Digestion of the earthworms showed that they did not retain microplastics in their gut. These findings indicate that microplastics could act as vectors to increase metal exposure in earthworms, but that the associated risk is unlikely to be significant for essential metals such as Zn that are well regulated by metabolic processes.

The economics of soil C sequestration and agricultural emissions abatement

NASA Astrophysics Data System (ADS)

Alexander, P.; Paustian, K.; Smith, P.; Moran, D.

2015-04-01

Carbon is a critical component of soil vitality and is crucial to our ability to produce food. Carbon sequestered in soils also provides a further regulating ecosystem service, valued as the avoided damage from global climate change. We consider the demand and supply attributes that underpin and constrain the emergence of a market value for this vital global ecosystem service: markets being what economists regard as the most efficient institutions for allocating scarce resources to the supply and consumption of valuable goods. This paper considers how a potentially large global supply of soil carbon sequestration is reduced by economic and behavioural constraints that impinge on the emergence of markets, and alternative public policies that can efficiently transact demand for the service from private and public sector agents. In essence, this is a case of significant market failure. In the design of alternative policy options, we consider whether soil carbon mitigation is actually cost-effective relative to other measures in agriculture and elsewhere in the economy, and the nature of behavioural incentives that hinder policy options. We suggest that reducing the cost and uncertainties of mitigation through soil-based measures is crucial for improving uptake. Monitoring and auditing processes will also be required to eventually facilitate wide-scale adoption of these measures.

Integrating 'omic' data and biogeochemical modeling: the key to understanding the microbial regulation of matter cycling in soil

NASA Astrophysics Data System (ADS)

Pagel, Holger; Kandeler, Ellen; Seifert, Jana; Camarinha-Silva, Amélia; Kügler, Philipp; Rennert, Thilo; Poll, Christian; Streck, Thilo

2016-04-01

Matter cycling in soils and associated soil functions are intrinsically controlled by microbial dynamics. It is therefore crucial to consider functional traits of microorganisms in biogeochemical models. Tremendous advances in 'omic' methods provide a plethora of data on physiology, metabolic capabilities and ecological life strategies of microorganisms in soil. Combined with isotopic techniques, biochemical pathways and transformations can be identified and quantified. Such data have been, however, rarely used to improve the mechanistic representation of microbial dynamics in soil organic matter models. It is the goal of the Young Investigator Group SoilReg to address this challenge. Our general approach is to tightly integrate experiments and biochemical modeling. NextGen sequencing will be applied to identify key functional groups. Active microbial groups will be quantified by measurements of functional genes and by stable isotope probing methods of DNA and proteins. Based on this information a biogeochemical model that couples a mechanistic representation of microbial dynamics with physicochemical processes will be set up and calibrated. Sensitivity and stability analyses of the model as well as scenario simulations will reveal the importance of intrinsic and extrinsic controls of organic matter turnover. We will demonstrate our concept and present first results of two case studies on pesticide degradation and methane oxidation.

Coupling a high resolution soil erosion model with an agro-ecosystem model of SOC dynamics. An approach to assess the potential environmental effect of the new Common Agricultural Policy on soil degradation

NASA Astrophysics Data System (ADS)

Borrelli, Pasqualle; Paustian, Keith; Panagos, Panos; Jones, Arwyn; Schütt, Brigitta; Lugato, Emanuele

2016-04-01

At the European Union level, the main mechanisms to promote a more sustainable and environmentally friendly agriculture was introduced by the Common Agricultural Policy (CAP) reform in 2003, through the Cross-compliance. According to this new regulation, the farmer support payments were regulated with respect to environmental, animal welfare and food safety standards. This brought to the Good Agricultural and Environmental Conditions (GAEC), firstly established by Council Regulation No. 1782/2003 and subsequently Council Regulation (EC) No 73/2009. The prevention of soil erosion and maintenance of soil organic matter were two of GAEC requirements, which each Member State was obliged to address through national standards such as: i) minimal soil cover maintenance (GAEC 4); ii) minimum land management reflecting site specific conditions to limit soil loss (GAEC 5) and iii) maintenance of soil organic matter level through appropriate practices including ban on burning arable stubbles (GAEC 6). Although Member States are required to verify whether the farmers are compliant with the regulations (Cross-compliance), the environmental effect of Good Agricultural and Environmental Conditions (GAEC) applications on erosion and carbon budgets are still little known and studied. To investigate the potential impacts of the GAEC, we coupled a high resolution erosion model based on Revised Universal Soil Loss Equation (RUSLE) with the CENTURY biogeochemical model (Land Use Policy, 50, 408-421; 2016). The Italian arable land was selected as a study area, since it is well-known to be highly sensitive to soil erosion. Multi scenario modelling approach was undertaken, i.e., i) a baseline scenario without scenario excluding GAEC (pre 2003 period); ii) a present scenario including the current GAEC standards (post 2003 period), and iii) a technical potential scenario assuming that the GAEC standards were applied to the entire Italian arable land. The results show a 10.8% decrease, from 8.33 Mg ha-1 yr-1 to 7.43 Mg ha-1 yr-1, in soil loss potential due to the adoption of the GAEC conservation practices (with respect to the baseline scenario). The technical potential scenario shows a 50.1% decrease in the soil loss potential (soil loss 4.1 Mg ha-1 yr-1). With regard to the soil organic carbon (SOC), the GAEC application in the current scenario shown an overall soil organic carbon (SOC) gains, with about 17% of the SOC variation related to avoided SOC transport by sediment erosion. The technical potential scenario suggests a potential gain up to 23.3 Mt of C by 2020 with the full GAEC application.

Forecast model for a water table control system in cranberry production

NASA Astrophysics Data System (ADS)

Racine, Cintia; José Gumiere, Silvio; Paniconi, Claudio; Dupuis, Christian; Lafond, Jonathan; Scudeler, Carlotta; Camporese, Matteo

2017-04-01

Water table control is gaining popularity in cranberry production. Cranberry plants require specific soil moisture conditions to enhance crop yields. In fact, water table control systems installed in the fields allow the plants to respond efficiently to the daily demand for evapotranspiration by capillarity rise and also regulate the soil water excess in drainage conditions. The scope of this study is to develop a forecast hydrological model at the field scale, able to simulate water level for water table control operations. In this work, the finite element CATHY (CATchment Hydrology) model associated with sequential data assimilation with an ensemble Kalman filter (EnKF) method will be used to simulated the soil water dynamics and perform model calibration in real-time. The study is conducted in cranberry fields located in Québec, Canada. During the last five years, these fields were extensive characterized regarding hydrological, pedological, and geological processes. Data collected from LIDAR and Ground Penetrating Radar (GPR) surveys and in-situ soil sampling have been used to define the domain geometry and initial soil properties. First results are promising and in agreement the in-situ water table measurements.

Root exudation of phytosiderophores from soil-grown wheat

PubMed Central

Oburger, Eva; Gruber, Barbara; Schindlegger, Yvonne; Schenkeveld, Walter D C; Hann, Stephan; Kraemer, Stephan M; Wenzel, Walter W; Puschenreiter, Markus

2014-01-01

For the first time, phytosiderophore (PS) release of wheat (Triticum aestivum cv Tamaro) grown on a calcareous soil was repeatedly and nondestructively sampled using rhizoboxes combined with a recently developed root exudate collecting tool. As in nutrient solution culture, we observed a distinct diurnal release rhythm; however, the measured PS efflux was c. 50 times lower than PS exudation from the same cultivar grown in zero iron (Fe)-hydroponic culture. Phytosiderophore rhizosphere soil solution concentrations and PS release of the Tamaro cultivar were soil-dependent, suggesting complex interactions of soil characteristics (salinity, trace metal availability) and the physiological status of the plant and the related regulation (amount and timing) of PS release. Our results demonstrate that carbon and energy investment into Fe acquisition under natural growth conditions is significantly smaller than previously derived from zero Fe-hydroponic studies. Based on experimental data, we calculated that during the investigated period (21–47 d after germination), PS release initially exceeded Fe plant uptake 10-fold, but significantly declined after c. 5 wk after germination. Phytosiderophore exudation observed under natural growth conditions is a prerequisite for a more accurate and realistic assessment of Fe mobilization processes in the rhizosphere using both experimental and modeling approaches. PMID:24890330

Reversible electrokinetic adsorption barriers for the removal of organochlorine herbicide from spiked soils.

PubMed

Rodrigo, S; Saez, C; Cañizares, P; Rodrigo, M A

2018-06-02

This work aims to describe the removal of clopyralid from clay soils using electrokinetically assisted soil flushing (EKSF) coupled with a permeable reactive barrier (PRB), consisting of beds of Granulated Activated Carbon (GAC). To do this, two strategies have been evaluated on bench-scale electroremediation facilities (175 dm 3 ): electrokinetic adsorption barrier (EKAB) and reversible electrokinetic adsorption barrier (REKAB). Likewise, to clarify the contribution of the different mechanisms to remediation process results are compared to those obtained in a reference test (without applying an electric field) and to results obtained in the EKSF of soils polluted with compounds with different polarity and vapour pressure. Results show that during EKAB and REKAB tests, clopyralid is removed from the soil by adsorption in PRB, electrokinetic transport and, very less decisively, by evaporation. The application of polarity reversion attains a higher retention of clopyralid in the activated carbon-PRB and a better regulation of pH because of the neutralization of H + and OH - generated in the electrolyte wells. After 30 days of operation, the removal of clopyralid by EKAB is 45% while it reaches 57% in the case of REKAB. Copyright © 2018. Published by Elsevier B.V.

Do forest soil microbes have the potential to resist plant invasion? A case study in Dinghushan Biosphere Reserve (South China)

NASA Astrophysics Data System (ADS)

Chen, Bao-Ming; Li, Song; Liao, Hui-Xuan; Peng, Shao-Lin

2017-05-01

Successful invaders must overcome biotic resistance, which is defined as the reduction in invasion success caused by the resident community. Soil microbes are an important source of community resistance to plant invasions, and understanding their role in this process requires urgent investigation. Therefore, three forest communities along successional stages and four exotic invasive plant species were selected to test the role of soil microbes of three forest communities in resisting the exotic invasive plant. Our results showed that soil microbes from a monsoon evergreen broadleaf forest (MEBF) (late-successional stage) had the greatest resistance to the invasive plants. Only the invasive species Ipomoea triloba was not sensitive to the three successional forest soils. Mycorrhizal fungi in early successional forest Pinus massonina forest (PMF) or mid-successional forest pine-broadleaf mixed forest (PBMF) soil promoted the growth of Mikania micrantha and Eupatorium catarium, but mycorrhizal fungi in MEBF soil had no significant effects on their growth. Pathogens plus other non-mycorrhizal microbes in MEBF soil inhibited the growth of M. micrantha and E. catarium significantly, and only inhibited root growth of E. catarium when compared with those with mycorrhizal fungi addition. The study suggest that soil mycorrhizal fungi of early-mid-successional forests benefit invasive species M. micrantha and E. catarium, while soil pathogens of late-successional forest may play an important role in resisting M. micrantha and E. catarium. The benefit and resistance of the soil microbes are dependent on invasive species and related to forest succession. The study gives a possible clue to control invasive plants by regulating soil microbes of forest community to resist plant invasion.

Patterns and drivers of soil microbial communities in temperate grasslands on the Mongolian plateau

NASA Astrophysics Data System (ADS)

Yang, Y.; Hu, H.; Hao, B.; Liu, Y.; Chen, Y.; Ma, W.

2016-12-01

Soil microorganisms play key roles in regulating many important ecosystem processes. However, our understanding of the patterns and drivers of soil microbial communities at the regional scale remains limited. In this study, on the basis of phospholipid fatty acid (PLFA) analysis, we investigated large-scale patterns and drivers of soil microbial communities using data from 78 sites between two depths (0-10 cm and 10-20 cm) within three major grassland types (desert steppe, typical steppe, and meadow steppe) on the Mongolian Plateau. Our findings demonstrated that, at the regional scale, the total soil microbial biomass, fungal biomass, bacterial biomass, and actinomycete biomass in Inner Mongolian temperate grasslands were all positively associated with mean annual precipitation (MAP), soil organic carbon (SOC), soil total nitrogen (TN), C:N ratio, plant aboveground biomass (AGB), and plant species richness (SR), but negatively correlated with mean annual temperature (MAT), soil bulk density (BD), and soil pH in both depths, except actinomycete biomass with MAP and BD in 10-20 cm. A stepwise regression analysis revealed that soil microbial community variations in Inner Mongolian temperate grasslands were mainly explained by C : N ratio in 0-10 cm, but by SR (total soil microbial biomass, fungal biomass, and actinomycete biomass) and MAT (bacterial biomass) in 10-20 cm. Our findings strongly indicate that the dominant drivers of spatial variations in soil microbial communities between 0-10 cm and 10-20 cm in the Inner Mongolia grasslands are significantly different, with edaphic factors (e.g., C: N ratio) in 0-10 cm but climatic (e.g, MAT) and/or biotic (e.g, SR) in 10-20 cm.

Nitrogen enrichment regulates calcium sources in forests

USGS Publications Warehouse

Hynicka, Justin D.; Pett-Ridge, Julie C.; Perakis, Steven

2016-01-01

Nitrogen (N) is a key nutrient that shapes cycles of other essential elements in forests, including calcium (Ca). When N availability exceeds ecosystem demands, excess N can stimulate Ca leaching and deplete Ca from soils. Over the long term, these processes may alter the proportion of available Ca that is derived from atmospheric deposition vs. bedrock weathering, which has fundamental consequences for ecosystem properties and nutrient supply. We evaluated how landscape variation in soil N, reflecting long-term legacies of biological N fixation, influenced plant and soil Ca availability and ecosystem Ca sources across 22 temperate forests in Oregon. We also examined interactions between soil N and bedrock Ca using soil N gradients on contrasting basaltic vs. sedimentary bedrock that differed 17-fold in underlying Ca content. We found that low-N forests on Ca-rich basaltic bedrock relied strongly on Ca from weathering, but that soil N enrichment depleted readily weatherable mineral Ca and shifted forest reliance toward atmospheric Ca. Forests on Ca-poor sedimentary bedrock relied more consistently on atmospheric Ca across all levels of soil N enrichment. The broad importance of atmospheric Ca was unexpected given active regional uplift and erosion that are thought to rejuvenate weathering supply of soil minerals. Despite different Ca sources to forests on basaltic vs. sedimentary bedrock, we observed consistent declines in plant and soil Ca availability with increasing N, regardless of the Ca content of underlying bedrock. Thus, traditional measures of Ca availability in foliage and soil exchangeable pools may poorly reflect long-term Ca sources that sustain soil fertility. We conclude that long-term soil N enrichment can deplete available Ca and cause forests to rely increasingly on Ca from atmospheric deposition, which may limit ecosystem Ca supply in an increasingly N-rich world.

Landscape Disturbance History and Belowground Carbon Dynamics.

NASA Astrophysics Data System (ADS)

Marin-Spiotta, E.; Smith, A. P.; Atkinson, E. E.; Chaopricha, N. T.

2014-12-01

Earth system models vary in their predictions of carbon (C) uptake and release by the terrestrial biosphere, partly due to great uncertainties in the response of soils, one of the largest C reservoirs. The world's soils play a major role in the exchange of greenhouse gases with the atmosphere, in sustaining primary production, and in providing food security. Despite this, the sensitivity of soils to disturbance is highly uncertain. One reason for this is geographic variability in the importance of different mechanisms regulating soil C turnover. Most of our understanding of factors influencing soil organic C dynamics comes from research in temperate soils, despite the major role of tropical soils in the global C cycle. Even in the tropics, the diversity of soil environments is grossly underrepresented in the literature. This has important implications for predictions of soil C change across latitudes. We discuss results from the response of soil C pools and microbial communities to land use legacies on two contrasting tropical soil environments. Uncertainties in the response of soil C to disturbance also stem from a historic focus on shallow depths and the assumption that deep soil C is unreactive to landscape change. Growing evidence indicates that soil C pools in deep mineral horizons can be sensitive to changes in land cover and climate. This realization highlights the need to reassess the source of soil C at depth and the processes contributing to its stabilization. We discuss results from the interaction between multiple disturbances: drought, fire and erosion, on the accumulation of soil C at depths beyond those typically included in regional or global inventories. Our data show that deep soil C can be reactive and be a potential source of C if reconnected to the atmosphere. A deeper, mechanistic appreciation for a landscape's history of disturbance is critical for predicting feedbacks between the terrestrial biosphere and the climate system.

[Biosafety in the study of samples of extraterrestrial origin by an example of preparation for the "Phobos-Grunt" mission].

PubMed

Dobrokhotskiĭ, O N; Diatlov, I A; Orlov, O I; Novikova, N D; Khamidullina, N M; Deshevaia, E A

2012-01-01

The necessity of microbial studying the soil from Phobos and terrestrial biological objects, which were for a long time in deep space and may represent a biological hazard has been shown. Developed medical and technical requirements for laboratories comply with Russian regulations and recommendations of international instruments for the ensuring of biosafety on the basis of process (continuous) biorisk management.

Illuminating the hydrology of a high-elevation tropical ecosystem: Runoff generation in the páramo

NASA Astrophysics Data System (ADS)

Mosquera, G.; Lazo, P. X.; Célleri, R.; Vache, K. B.; Segura, C.; Crespo, P.

2016-12-01

A high-elevation tropical ecosystem that develops above the three line, the páramo, is known as the "water tower" of South America. However, rainfall-runoff processes and the influence of landscape structure in the hydrologic behavior of this ecosystem remain unknown. Here, we provide a process-based interpretation of runoff generation and insights into the landscape features controlling the hydrology in the páramo of the Zhurucay River Ecohydrological Observatory located in south Ecuador between 3400-3900 m a.s.l. A nested monitoring system of seven catchments (0.20-7.53 km2) was used to measure hydrometric data since December 2010. Biweekly samples of rainfall, streamflow, and soil water were collected for 3 years (May 2011-May2014) and analyzed for water stable isotopes. A combined assessment of hydrometric and isotopic data was used to investigate runoff generation. Mean transit times (MTTs) of baseflow were estimated by integrating the isotopic data into a lumped model. Isotope signals evidenced that water stored in the shallow organic horizon of the páramo soils located at the bottom of the valley near the streams (Histosols) is the major contributor to runoff generation year-round, whereas water draining through the hillslope soils (Andosols) regulates discharge by recharging the Histosols at the valley bottoms. The MTT evaluation showed relatively short MTTs (6.1±2.0 months) linked to short subsurface flow paths of water towards the stream network. We also found evidence of vegetation cover controls on water yield and runoff generation and topographic controls on baseflow MTT variability. These results reveal that 1) the runoff generation mechanisms of this ecosystem are dominated by shallow subsurface flow in the organic horizon of the soils and 2) the combination of the high storage capacity of the Histosols and the slope of the catchments controls runoff generation and the high water regulation capacity of the ecosystem.

The influence of soil type and altered lignin biosynthesis on the physiology, growth and carbon allocation in Populus tremuloides

Treesearch

Jessica E. Hancock; Kate L. Bradley; Christian P. Giardina; Kurt S. Pregitzer

2008-01-01

Plants influence soil carbon (C) formation through the quality and quantity of C released to soil. Soil type, in turn can modify a plant's influence on soil through effects on plant production, tissue quality and regulation of soil C decomposition and stabilization. Wild-type aspen and three transgenic aspen lines expressing reduced stem lignin concentrations and/...

Soil physical properties regulate lethal heating during burning of woody residues

Treesearch

Matt Busse; Carol Shestak; Ken Hubbert; Eric Knapp

2010-01-01

Temperatures well in excess of the lethal threshold for roots (60°C) have been measured in forest soils when woody fuels are burned. Whether this heat pulse is strongly moderated by soil moisture or soil texture is not fully understood, however. We measured soil heat profi les during 60 experimental burns, identifying changes in maximum soil temperature and heat...

Transcriptome changes induced by arbuscular mycorrhizal fungi in sunflower (Helianthus annuus L.) roots.

PubMed

Vangelisti, Alberto; Natali, Lucia; Bernardi, Rodolfo; Sbrana, Cristiana; Turrini, Alessandra; Hassani-Pak, Keywan; Hughes, David; Cavallini, Andrea; Giovannetti, Manuela; Giordani, Tommaso

2018-01-08

Arbuscular mycorrhizal (AM) fungi are essential elements of soil fertility, plant nutrition and productivity, facilitating soil mineral nutrient uptake. Helianthus annuus is a non-model, widely cultivated species. Here we used an RNA-seq approach for evaluating gene expression variation at early and late stages of mycorrhizal establishment in sunflower roots colonized by the arbuscular fungus Rhizoglomus irregulare. mRNA was isolated from roots of plantlets at 4 and 16 days after inoculation with the fungus. cDNA libraries were built and sequenced with Illumina technology. Differential expression analysis was performed between control and inoculated plants. Overall 726 differentially expressed genes (DEGs) between inoculated and control plants were retrieved. The number of up-regulated DEGs greatly exceeded the number of down-regulated DEGs and this difference increased in later stages of colonization. Several DEGs were specifically involved in known mycorrhizal processes, such as membrane transport, cell wall shaping, and other. We also found previously unidentified mycorrhizal-induced transcripts. The most important DEGs were carefully described in order to hypothesize their roles in AM symbiosis. Our data add a valuable contribution for deciphering biological processes related to beneficial fungi and plant symbiosis, adding an Asteraceae, non-model species for future comparative functional genomics studies.

Linking soil DOC production rates and transport processes from landscapes to sub-basin scales

NASA Astrophysics Data System (ADS)

Tian, Y. Q.; Yu, Q.; Li, J.; Ye, C.

2014-12-01

Recent research rejects the traditional perspective that dissolved organic carbon (DOC) component in global carbon cycle are simply trivial, and in fact evidence demonstrates that lakes likely mediate carbon dynamics on a global scale. Riverine and estuarine carbon fluxes play a critical role in transporting and recycling carbon and nutrients, not only within watersheds but in their receiving waters. However, the underlying mechanisms that drive carbon fluxes, from land to rivers, lake and oceans, remain poorly understood. This presentation will report a research result of the scale-dependent DOC production rate in coastal watersheds and DOC transport processes in estuarine regions. We conducted a series of controlled experiments and field measurements for examining biogeochemical, biological, and geospatial variables that regulate downstream processing on global-relevant carbon fluxes. Results showed that increased temperatures and raised soil moistures accelerate decomposition rates of organic matter with significant variations between vegetation types. The measurements at meso-scale ecosystem demonstrated a good correlation to bulk concentration of DOC monitored in receiving waters at the outlets of sub-basins (R2 > 0.65). These field and experimental measurements improved the model of daily carbon exports through below-ground processes as a function of the organic matter content of surface soils, forest litter supply, and temperature. The study demonstrated a potential improvement in modeling the co-variance of CDOM and DOC with the unique terrestrial sources. This improvement indicated a significant promise for monitoring riverine and estuarine carbon flux from satellite images. The technical innovations include deployments of 1) mini-ecosystem (mesocosms) with soil as replicate controlled experiments for DOC production and leaching rates, and 2) aquatic mesocosms for co-variances of DOC and CDOM endmembers, and an instrumented incubation experiment for determining degradation rates.

Networking our science to characterize the state, vulnerabilities, and management opportunities of soil organic matter.

PubMed

Harden, Jennifer W; Hugelius, Gustaf; Ahlström, Anders; Blankinship, Joseph C; Bond-Lamberty, Ben; Lawrence, Corey R; Loisel, Julie; Malhotra, Avni; Jackson, Robert B; Ogle, Stephen; Phillips, Claire; Ryals, Rebecca; Todd-Brown, Katherine; Vargas, Rodrigo; Vergara, Sintana E; Cotrufo, M Francesca; Keiluweit, Marco; Heckman, Katherine A; Crow, Susan E; Silver, Whendee L; DeLonge, Marcia; Nave, Lucas E

2018-02-01

Soil organic matter (SOM) supports the Earth's ability to sustain terrestrial ecosystems, provide food and fiber, and retains the largest pool of actively cycling carbon. Over 75% of the soil organic carbon (SOC) in the top meter of soil is directly affected by human land use. Large land areas have lost SOC as a result of land use practices, yet there are compensatory opportunities to enhance productivity and SOC storage in degraded lands through improved management practices. Large areas with and without intentional management are also being subjected to rapid changes in climate, making many SOC stocks vulnerable to losses by decomposition or disturbance. In order to quantify potential SOC losses or sequestration at field, regional, and global scales, measurements for detecting changes in SOC are needed. Such measurements and soil-management best practices should be based on well established and emerging scientific understanding of processes of C stabilization and destabilization over various timescales, soil types, and spatial scales. As newly engaged members of the International Soil Carbon Network, we have identified gaps in data, modeling, and communication that underscore the need for an open, shared network to frame and guide the study of SOM and SOC and their management for sustained production and climate regulation. © 2017 The Authors. Global Change Biology Published by John Wiley & Sons Ltd.

78 FR 77722 - Environmental Assessment and Finding of No Significant Impact Related to an Alternative Disposal...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-12-24

... Fuel Cycle Facility in Festus, Missouri authorizing alternative disposal of soil and soil-like wastes... Code of Federal Regulations (10 CFR), of an additional 22,000 m\\3\\ (cubic meters) of soil and soil-like... for disposal of dewatered sanitary sludge as soil-like material. The licensee holds NRC License No...

Sensitivity of soil permafrost to winter warming: Modeled impacts of climate change.

NASA Astrophysics Data System (ADS)

Bouskill, N.; Riley, W. J.; Mekonnen, Z. A.; Grant, R.

2016-12-01

High-latitude tundra soils are warming at nearly twice the rate of temperate ecosystems. Changes in temperature and soil moisture can feedback on the processes controlling the carbon balance of tundra soils by altering plant community composition and productivity and microbial decomposition rates. Recent field manipulation experiments have shown that elevated soil and air temperatures can stimulate both gross primary productivity and ecosystem respiration. However, the observed soil carbon gains following summer time stimulation of plant productivity have been more than offset by elevated decomposition rates during the rest of the year, and particularly over winter. A critical uncertainty is whether these short-term responses also represent the long-term trajectory of tundra ecosystems under chronic disturbance. Herein we employ a mechanistic land-model (ecosys) that represents many of the key above- and belowground processes regulating the carbon balance of tundra soils to simulate a winter warming experiment at Eight Mile Lake, Alaska. Using this model we examined the short-term (5 - 10 year) influence of soil warming through the wintertime by mimicking the accumulation of a deeper snow pack. This deeper snow pack was removed to a height equal to that of the snow pack over control plots prior to snow melt. We benchmarked the model using physical and biological measurements made over the course of a six-year experiment at the site. The model accurately represented the effect of the experimental manipulation on thaw depth, N mineralization, winter respiration, and ecosystem gross and net primary production. After establishing confidence in the modeled short-term responses, we extend the same chronic disturbance to 2050 to examine the long-term response of the plant and microbial communities to warming. We discuss our results in reference to the long-term trajectory of the carbon and nutrient cycles of high-latitude permafrost regions.

Physiological and biochemical perspectives of non-salt tolerant plants during bacterial interaction against soil salinity.

PubMed

Radhakrishnan, Ramalingam; Baek, Kwang Hyun

2017-07-01

Climatic changes on earth affect the soil quality of agricultural lands, especially by increasing salt deposition in soil, which results in soil salinity. Soil salinity is a major challenge to growth and reproduction among glycophytes (including all crop plants). Soil bacteria present in the rhizosphere and/or roots naturally protect plants from the adverse effects of soil salinity by reprogramming the stress-induced physiological changes in plants. Bacteria can enrich the soil with major nutrients (nitrogen, phosphorus, and potassium) in a form easily available to plants and prevent the transport of excess sodium to roots (exopolysaccharides secreted by bacteria bind with sodium ions) for maintaining ionic balance and water potential in cells. Salinity also affects plant growth regulators and suppresses seed germination and root and shoot growth. Bacterial secretion of indole-3-acetic acid and gibberellins compensates for the salt-induced hormonal decrease in plants, and bacterial 1-aminocyclopropane-1-carboxylate (ACC) deaminase synthesis decreases ethylene production to stimulate plant growth. Furthermore, bacteria modulate the redox state of salinity-affected plants by enhancing antioxidants and polyamines, which leads to increased photosynthetic efficiency. Bacteria-induced accumulation of compatible solutes in stressed plants regulates plant cellular activities and prevents salt stress damage. Plant-bacterial interaction reprograms the expression of salt stress-responsive genes and proteins in salinity-affected plants, resulting in a precise stress mitigation metabolism as a defense mechanism. Soil bacteria increase the fertility of soil and regulate the plant functions to prevent the salinity effects in glycophytes. This review explains the current understanding about the physiological changes induced in glycophytes during bacterial interaction to alleviate the adverse effects of soil salinity stress. Copyright © 2017 Elsevier Masson SAS. All rights reserved.

Linking Carbonic Anhydrase Abundance and Diversity in Soils to Ecological Function

NASA Astrophysics Data System (ADS)

Pang, E.; Meredith, L. K.; Welander, P. V.

2015-12-01

Carbonic anhydrase (CA) is an ancient enzyme widespread among bacteria, archaea, and eukarya that catalyzes the following reaction: CO2 + H2O ⇌ HCO3- + H+. Its functions are critical for key cellular processes such as concentrating CO2 for autotrophic growth, pH regulation, and pathogen survival in hosts. Currently, there are six known CA classes (α, β, γ, δ, η, ζ) arising from several distinct evolutionary lineages. CA are widespread in sequenced genomes, with many organisms containing multiple classes of CA or multiple CA of the same class. Soils host rich microbial communities with diverse and important ecological functions, but the diversity and abundance of CA in soils has not been explored. CA appears to play an important, but poorly understood, role in some biogeochemical cycles such as those of CO2 and its oxygen isotope composition and also carbonyl sulfide (COS), which are potential tracers in predictive carbon cycle models. Recognizing the prevalence and functional significance of CA in soils, we used a combined bioinformatics and molecular biology approach to address fundamental questions regarding the abundance, diversity, and function of CA in soils. To characterize the abundance and diversity of the different CA classes in soils, we analyzed existing soil metagenomic and metatranscriptomic data from the DOE Joint Genome Institute databases. Out of the six classes of CA, we only found the α, β, and γ classes to be present in soils, with the β class being the most abundant. We also looked at genomes of sequenced soil microorganisms to learn what combination of CA classes they contain, from which we can begin to predict the physiological role of CA. To characterize the functional roles of the different CA classes in soils, we collected soil samples from a variety of biomes with diverse chemical and physical properties and quantified the rate of two CA-mediated processes: soil uptake of COS and acceleration of the oxygen isotope exchange between CO2 and H2O. We employed PCR-based methods to quantify the abundance and diversity of CA encoding genes and their expression in our samples to link CA classes to the gas flux data. These studies provide the first survey of CA in soils, a step towards understanding CA's potentially significant role in microbial survival and microbe-mediated biogeochemical cycles.

Drought-Up-Regulated TaNAC69-1 is a Transcriptional Repressor of TaSHY2 and TaIAA7, and Enhances Root Length and Biomass in Wheat.

PubMed

Chen, Dandan; Richardson, Terese; Chai, Shoucheng; Lynne McIntyre, C; Rae, Anne L; Xue, Gang-Ping

2016-10-01

A well-known physiological adaptation process of plants encountering drying soil is to achieve water balance by reducing shoot growth and maintaining or promoting root elongation, but little is known about the molecular basis of this process. This study investigated the role of a drought-up-regulated Triticum aestivum NAC69-1 (TaNAC69-1) in the modulation of root growth in wheat. TaNAC69-1 was predominantly expressed in wheat roots at the early vegetative stage. Overexpression of TaNAC69-1 in wheat roots using OsRSP3 (essentially root-specific) and OsPIP2;3 (root-predominant) promoters resulted in enhanced primary seminal root length and a marked increase in maturity root biomass. Competitive growth analysis under water-limited conditions showed that OsRSP3 promoter-driven TaNAC69-1 transgenic lines produced 32% and 35% more above-ground biomass and grains than wild-type plants, respectively. TaNAC69-1 overexpression in the roots down-regulated the expression of TaSHY2 and TaIAA7, which are from the auxin/IAA (Aux/IAA) transcriptional repressor gene family and are the homologs of negative root growth regulators SHY2/IAA3 and IAA7 in Arabidopsis. The expression of TaSHY2 and TaIAA7 in roots was down-regulated by drought stress and up-regulated by cytokinin treatment, which inhibited root growth. DNA binding and transient expression analyses revealed that TaNAC69-1 bound to the promoters of TaSHY2 and TaIAA7, acted as a transcriptional repressor and repressed the expression of reporter genes driven by the TaSHY2 or TaIAA7 promoter. These data suggest that TaNAC69-1 is a transcriptional repressor of TaSHY2 and TaIAA7 homologous to Arabidopsis negative root growth regulators and is likely to be involved in promoting root elongation in drying soil. © The Author 2016. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Impacts of nitrogen fertilization and plant species diversity on soil C accumulation in a lignocellulosic bioenergy cropping system nine years following land conversion

NASA Astrophysics Data System (ADS)

De Graaff, M. A.; Jastrow, J. D.

2017-12-01

Ethanol production from second generation biofuel feedstocks, including the perennial grasses switchgrass (Panicum virgatum L.) and big bluestem (Andropogon gerardii) has expanded rapidly, with the aim to reduce greenhouse gas emissions. However, land conversion for bioenergy production releases carbon (C) stored in soil to the atmosphere as CO2, and creates a C debt in ecosystems. If biofuels are to aid in curbing atmospheric CO2 concentrations, it is important that this initial C debt be repaid rapidly. A variety of management approaches aimed at increasing NPP and soil C input may be used to accelerate the repayment of soil C. We conducted a long-term field experiment located at the Fermilab National Environmental Research Park in IL, that compares a variety of approaches for perennial feedstock production following conversion of an old-field dominated by C3 grasses to a grassland dominated by C4 perennial grasses. Treatments included a variety of big bluestem and switchgrass cultivars grown in monoculture, diversity manipulated at both the species- and cultivar level, and nitrogen (N) applied at two levels (0 and 67 kg/ha). Previous results from this experiment indicated that four years following initiation of this experiment, only choice of plant species significantly affected the rate of bulk soil C-debt repayment. Here we quantified how nine years of fertilization, plant species, and inter- and intra-specific diversity treatments affect soil C accumulation. To increase our detection of changes in soil C and our mechanistic understanding of the processes that drive C accumulation in this experiment, we used the natural abundance C isotope ratio technique to estimate the contribution and fate of root-derived C to soil organic matter pools. Additionally, we evaluated how the different management approaches affected the ecological sustainability of bioenergy production, by quantifying impacts of the treatments on soil micro-and meso fauna abundance and diversity. Our results will improve our understanding of how alternative management approaches in lignocellulosic biofuel cropping systems regulate soil C sequestration, and the processes that influence it.

Intensive agriculture reduces soil biodiversity across Europe.

PubMed

Tsiafouli, Maria A; Thébault, Elisa; Sgardelis, Stefanos P; de Ruiter, Peter C; van der Putten, Wim H; Birkhofer, Klaus; Hemerik, Lia; de Vries, Franciska T; Bardgett, Richard D; Brady, Mark Vincent; Bjornlund, Lisa; Jørgensen, Helene Bracht; Christensen, Sören; Hertefeldt, Tina D'; Hotes, Stefan; Gera Hol, W H; Frouz, Jan; Liiri, Mira; Mortimer, Simon R; Setälä, Heikki; Tzanopoulos, Joseph; Uteseny, Karoline; Pižl, Václav; Stary, Josef; Wolters, Volkmar; Hedlund, Katarina

2015-02-01

Soil biodiversity plays a key role in regulating the processes that underpin the delivery of ecosystem goods and services in terrestrial ecosystems. Agricultural intensification is known to change the diversity of individual groups of soil biota, but less is known about how intensification affects biodiversity of the soil food web as a whole, and whether or not these effects may be generalized across regions. We examined biodiversity in soil food webs from grasslands, extensive, and intensive rotations in four agricultural regions across Europe: in Sweden, the UK, the Czech Republic and Greece. Effects of land-use intensity were quantified based on structure and diversity among functional groups in the soil food web, as well as on community-weighted mean body mass of soil fauna. We also elucidate land-use intensity effects on diversity of taxonomic units within taxonomic groups of soil fauna. We found that between regions soil food web diversity measures were variable, but that increasing land-use intensity caused highly consistent responses. In particular, land-use intensification reduced the complexity in the soil food webs, as well as the community-weighted mean body mass of soil fauna. In all regions across Europe, species richness of earthworms, Collembolans, and oribatid mites was negatively affected by increased land-use intensity. The taxonomic distinctness, which is a measure of taxonomic relatedness of species in a community that is independent of species richness, was also reduced by land-use intensification. We conclude that intensive agriculture reduces soil biodiversity, making soil food webs less diverse and composed of smaller bodied organisms. Land-use intensification results in fewer functional groups of soil biota with fewer and taxonomically more closely related species. We discuss how these changes in soil biodiversity due to land-use intensification may threaten the functioning of soil in agricultural production systems. © 2014 John Wiley & Sons Ltd.

The effect of multiple contamination of soil on LMW and MMW PAHs accumulation in the roots of Rubus fruticosus L. naturally growing near The Copper Mining and Smelting Complex Bor (East Serbia).

PubMed

Alagić, Slađana Č; Stankov Jovanović, Vesna P; Mitić, Violeta D; Nikolić, Jelena S; Petrović, Goran M; Tošić, Snežana B; Stojanović, Gordana S

2017-06-01

Samples of roots and spatial soils of native Rubus fruticosus L. were collected from the spots positioned at different distances from the copper smelter and city heating plants in the industrial zone of the town of Bor (Serbia) and subjected to chemical analyses in order to determine the content of several heavy metals, and 15 priority polycyclic aromatic hydrocarbons (PAHs). In this study, the results for 9 low and medium molecular weight PAHs (LMW and MMW PAHs) are represented and processed using the calculation of bio-concentration factors and statistical methods such as hierarchical cluster analysis and Pearson's correlation study with the aim of investigating the plant capabilities for their uptake from the soil and later accumulation into the root tissue, under the hostile circumstances of multiple contamination. The obtained data revealed different accumulation rates for the investigated PAHs and showed that in several cases, the contents of root PAHs were under the strong influence of present contaminants such as soil copper and some soil PAHs, indicating at the same time that R. fruticosus can regulate the processes of LMW and MMW PAHs extraction/accumulation using different mechanisms, depending on the existing environmental circumstances. The used mechanisms could be exploited in phytoremediation methods based not only on the extraction and concentration of PAHs in plant roots but also on PAH degradation or stabilization in the soil. Also, the results of this study confirmed that, except in the case of naphthalene and fluoranthene, there was no PAH pollution, which originated solely from the industrial zone.

High spatial variability in biogeochemical rates and microbial communities across Louisiana salt marsh landscapes

NASA Astrophysics Data System (ADS)

Roberts, B. J.; Chelsky, A.; Bernhard, A. E.; Giblin, A. E.

2017-12-01

Salt marshes are important sites for retention and transformation of carbon and nutrients. Much of our current marsh biogeochemistry knowledge is based on sampling at times and in locations that are convenient, most often vegetated marsh platforms during low tide. Wetland loss rates are high in many coastal regions including Louisiana which has the highest loss rates in the US. This loss not only reduces total marsh area but also changes the relative allocation of subhabitats in the remaining marsh. Climate and other anthropogenic changes lead to further changes including inundation patterns, redox conditions, salinity regimes, and shifts in vegetation patterns across marsh landscapes. We present results from a series of studies examining biogeochemical rates, microbial communities, and soil properties along multiple edge to interior transects within Spartina alterniflora across the Louisiana coast; between expanding patches of Avicennia germinans and adjacent S. alterniflora marshes; in soils associated with the four most common Louisiana salt marsh plants species; and across six different marsh subhabitats. Spartina alterniflora marsh biogeochemistry and microbial populations display high spatial variability related to variability in soil properties which appear to be, at least in part, regulated by differences in elevation, hydrology, and redox conditions. Differences in rates between soils associated with different vegetation types were also related to soil properties with S. alterniflora soils often yielding the lowest rates. Biogeochemical process rates vary significantly across marsh subhabitats with individual process rates differing in their hotspot habitat(s) across the marsh. Distinct spatial patterns may influence the roles that marshes play in retaining and transforming nutrients in coastal regions and highlight the importance of incorporating spatial sampling when scaling up plot level measurements to landscape or regional scales.

Soil N transformations and its controlling factors in temperate grasslands in China: A study from 15N tracing experiment to literature synthesis

NASA Astrophysics Data System (ADS)

Wang, Jing; Wang, Liang; Feng, Xiaojuan; Hu, Huifeng; Cai, Zucong; Müller, Christoph; Zhang, Jinbo

2016-12-01

Temperate grasslands in arid and semiarid regions cover about 40% of the total land area in China. So far, only a few studies have studied the N transformations in these important ecosystems. In the present study, soil gross N transformation rates in Inner Mongolia temperate grasslands in China were determined using a 15N tracing experiment and combined with a literature synthesis to identify the soil N transformation characteristics and their controlling factors in a global perspective. Our results showed that the rates of gross N mineralization and immobilization NH4+ were significantly lower, while autotrophic nitrification rates were significantly higher in Chinese temperate grassland soils compared to other regions in the world. In particular, the primary mineral N consumption processes, i.e., immobilization of NO3- and NH4+, and dissimilatory nitrate reduction to ammonium, were on average much lower in temperate grassland soils in China, compared to other temperate grassland regions. The reduced heterotrophic activity and microbial growth associated with lower soil organic carbon and arid climate (e.g., mean annual precipitation) were identified as the main factors regulating soil N cycling in the studied regions in China. To restrict NO3- accumulation and associated high risks of N losses in these arid and semiarid ecosystems in China, it is important to develop the regimes of soil organic C and water management that promote the retention of N in these grassland ecosystems.

Avoidance behaviour of Enchytraeus albidus: effects of benomyl, carbendazim, phenmedipham and different soil types.

PubMed

Amorim, Mónica J B; Römbke, Jörg; Soares, Amadeu M V M

2005-04-01

Enchytraeids are typical inhabitants of many soils, contributing to vital processes of this environmental compartment. Indirectly they are involved in regulating the degradation of organic matter, as well as improving the pore structure of the soil. Due to their behaviour, they are able to avoid unfavourable environmental conditions. Avoidance tests with enchytraeids, initially developed with earthworms by several authors, are quick and easy to perform. With these tests a first assessment of the toxicity of a (contaminated or spiked) soil is possible in just 48 h by using the reaction of the enchytraeids as measurement endpoint. In this period of time the organisms can choose between the control soil and the other soil (a contaminated or spiked or another soil with different physico-chemical properties). In the tests reported here, the enchytraeids were exposed to control soils spiked with the fungicides Benomyl and Carbendazim and the herbicide Phenmedipham. Several chemical concentrations were tested in order to evaluate the avoidance behaviour to toxic substances. In fact, often these short-term screening tests gave results showing avoidance at concentrations in a range similar to the acute test results but, higher than in chronic tests. Further tests are needed to decide whether the results gained in this study can be extrapolated to other chemicals. It is proposed to standardize the Enchytraeid Avoidance Test as it is currently done for the Earthworm Avoidance Test by the International Standard Organization (ISO).

7 CFR 301.81-2 - Regulated articles.

Code of Federal Regulations, 2013 CFR

2013-01-01

... movement of imported fire ants are contained in part 330 of this chapter. (b) Soil, 2 separately or with other articles, except potting soil that is shipped in original containers in which the soil was placed after commercial preparation. 2 The movement of soil from Puerto Rico is subject to additional...

7 CFR 301.81-2 - Regulated articles.

Code of Federal Regulations, 2011 CFR

2011-01-01

... movement of imported fire ants are contained in part 330 of this chapter. (b) Soil, 2 separately or with other articles, except potting soil that is shipped in original containers in which the soil was placed after commercial preparation. 2 The movement of soil from Puerto Rico is subject to additional...

7 CFR 301.81-2 - Regulated articles.

Code of Federal Regulations, 2012 CFR

2012-01-01

... movement of imported fire ants are contained in part 330 of this chapter. (b) Soil, 2 separately or with other articles, except potting soil that is shipped in original containers in which the soil was placed after commercial preparation. 2 The movement of soil from Puerto Rico is subject to additional...

7 CFR 301.81-2 - Regulated articles.

Code of Federal Regulations, 2014 CFR

2014-01-01

... movement of imported fire ants are contained in part 330 of this chapter. (b) Soil, 2 separately or with other articles, except potting soil that is shipped in original containers in which the soil was placed after commercial preparation. 2 The movement of soil from Puerto Rico is subject to additional...

7 CFR 301.81-2 - Regulated articles.

Code of Federal Regulations, 2010 CFR

2010-01-01

... movement of imported fire ants are contained in part 330 of this chapter. (b) Soil, 2 separately or with other articles, except potting soil that is shipped in original containers in which the soil was placed after commercial preparation. 2 The movement of soil from Puerto Rico is subject to additional...

Assessing the Accuracy of Soil Carbon Inventories in a Forested Watershed Using Conventional and Advanced Approaches

EPA Science Inventory

Soils provide a number of vital Ecosystem Services (ESs) that society depends upon. Carbon held in soils contributes to a number of ESs including the production of food and fiber; water recharge, storage and purification; nutrient cycling, reducing soil erosion and climate regul...

Interactions between drought and soil biogeochemistry: scaling from molecules to meters

NASA Astrophysics Data System (ADS)

Schimel, J.; Schaeffer, S. M.

2011-12-01

Water is the perhaps the single most critical resource for life, yet most terrestrial ecosystems experience regular drought. Reduced water potential causes physiological stress; reduced diffusion limits resource availability when microbes may need resources to acclimate. Most biogeochemical models, however, have assumed that soil processes either slow down or stop during drought. But organisms survive and enzymes remain viable. In California, as soils stay dry through the long summer drought, microbial biomass actually increases and pools of extractable organic C increase, probably because extracellular enzymes continue to break down plant detritus (notably roots). Yet 14C suggests that in deeper soils, the pulse of C released on rewetting comes from pools with turnover times of as long as 800 years. What are the mechanisms that regulate these complex dynamics? They appear to involve differential moisture sensitivity for the activity of extracellular enzymes, substrate diffusion, and microbial metabolism. Rewetting not only redistributes materials made available during the drought, but it also disrupts aggregates and may make previously-protected substrates available as well. We have used several methods to simply capture these linkages between water and carbon in models that are applicable at the ecosystem scale and that could improve our ability to model biogeochemical cycles in arid and semi-arid ecosystems. One is a simple empirical modification to the DAYCENT model while the other is a mechanistic model that incorporates microbial dry-season processes.

Diverse Responses of Belowground Internal Nitrogen Cycling to Increasing Aridity

NASA Astrophysics Data System (ADS)

Kou, D.; Peng, Y.; Wang, G.; Ding, J.; Chen, Y.; Yang, G.; Fang, K.; Liu, L.; Zhang, B.; Müller, C.; Zhang, J.; Yang, Y.

2017-12-01

Belowground microbial nitrogen (N) dynamics play key roles in regulating structure and function of terrestrial ecosystems, however, our understanding on their responses to global change remains limited. This gap is particularly true for drylands, which constitute the largest biome in terrestrial ecosystems and are sensitive to predicted increase in aridity. Here, responding patterns and controls of six gross N transformation rates were explored along an aridity gradient in Tibetan drylands. Our results showed that gross N rates responded diversely to the changing aridity. Both mineralization (MN) and ammonium immobilization (INH4) declined as aridity increased. Aridity affected MN through its association with plant cover, clay content, soil organic matter (SOM), dissolved organic nitrogen (DON) and total microbial biomass, while regulated INH4 mainly through its effects on SOM and NH4+. Autotrophic nitrification (ONH4) exhibited a bell-shaped pattern along the gradient with a tipping point at aridity index = 0.47. Such a pattern was induced by aridity effects on the abundance of ammonia oxidizing archaea (AOA) and ammonia supplying capacity. Different from above N transformations, rates of nitrate immobilization (INO3) and dissimilatory nitrate reduction to ammonium (DNRA) had no responses to changing aridity, largely regulated by soil DON availability and clay content, respectively. Overall, these results suggest that predicted increase in aridity will exert different effects on various soil internal N cycling processes. The diverse patterns point to different responses of ecosystem N cycle with respect to aridity, and thus potentially have profound impact on structure and function of dryland ecosystems.

Quantifying the contribution of riparian soils to the provision of ecosystem services.

PubMed

de Sosa, Laura L; Glanville, Helen C; Marshall, Miles R; Prysor Williams, A; Jones, Davey L

2018-05-15

Riparian areas, the interface between land and freshwater ecosystems, are considered to play a pivotal role in the supply of regulating, provisioning, cultural and supporting services. Most previous studies, however, have tended to focus on intensive agricultural systems and only on a single ecosystem function. Here, we present the first study which attempts to assess a wide range of ecological processes involved in the provision of the ecosystem service of water quality regulation across a diverse range of riparian typologies. Specifically, we focus on 1) evaluating the spatial variation in riparian soils properties with respect to distance with the river and soil depth in contrasting habitat types; 2) gaining further insights into the underlying mechanisms of pollutant removal (i.e. pesticide sorption/degradation, denitrification, etc.) by riparian soils; and 3) quantify and evaluate how riparian vegetation across different habitat types contribute to the provision of watercourse shading. All the habitats were present within a single large catchment and included: (i) improved grassland, (ii) unimproved (semi-natural) grassland, (iii) broadleaf woodland, (iv) coniferous woodland, and (iv) mountain, heath and bog. Taking all the data together, the riparian soils could be statistically separated by habitat type, providing evidence that they deliver ecosystem services to differing extents. Overall, however, our findings seem to contradict the general assumption that soils in riparian area are different from neighbouring (non-riparian) areas and that they possess extra functionality in terms of ecosystem service provision. Watercourse shading was highly habitat specific and was maximal in forests (ca. 52% shade cover) in comparison to the other habitat types (7-17%). Our data suggest that the functioning of riparian areas in less intensive agricultural areas, such as those studied here, may be broadly predicted from the surrounding land use, however, further research is required to critically test this across a wider range of ecosystems. Copyright © 2017 Elsevier B.V. All rights reserved.

Predator community composition is linked to soil carbon retention across a human land use gradient.

PubMed

Schmitz, Oswald J; Buchkowski, Robert W; Smith, Jeffrey R; Telthorst, Mark; Rosenblatt, Adam E

2017-05-01

Soil carbon (C) storage is a major component of the carbon cycle. Consensus holds that soil C uptake and storage is regulated by plant-microbe-soil interactions. However, the contribution of animals in aboveground food webs to this process has been overlooked. Using insights from prior long-term experimentation in an old-field ecosystem and mathematical modeling, we predicted that the amount of soil C retention within a field should increase with the proportion of active hunting predators comprising the aboveground community of active hunting and sit-and-wait predators. This comes about because predators with different hunting modes have different cascading effects on plants. Our test of the prediction revealed that the composition of the arthropod predator community and associated cascading effects on the plant community explained 41% of variation in soil C retention among 15 old fields across a human land use gradient. We also evaluated the potential for several other candidate factors to explain variation in soil C retention among fields, independent of among-field variation in the predator community. These included live plant biomass, insect herbivore community composition, soil arthropod decomposer community composition, degree of land use development around the fields, field age, and soil texture. None of these candidate variables significantly explained soil C retention among the fields. The study offers a generalizable understanding of the pathways through which arthropod predator community composition can contribute to old-field ecosystem carbon storage. This insight helps support ongoing efforts to understand and manage the effects of anthropogenic land use change on soil C storage. © 2017 by the Ecological Society of America.

Subcellular partitioning of metals in Aporrectodea caliginosa along a gradient of metal exposure in 31 field-contaminated soils.

PubMed

Beaumelle, Léa; Gimbert, Frédéric; Hedde, Mickaël; Guérin, Annie; Lamy, Isabelle

2015-07-01

Subcellular fractionation of metals in organisms was proposed as a better way to characterize metal bioaccumulation. Here we report the impact of a laboratory exposure to a wide range of field-metal contaminated soils on the subcellular partitioning of metals in the earthworm Aporrectodea caliginosa. Soils moderately contaminated were chosen to create a gradient of soil metal availability; covering ranges of both soil metal contents and of several soil parameters. Following exposure, Cd, Pb and Zn concentrations were determined both in total earthworm body and in three subcellular compartments: cytosolic, granular and debris fractions. Three distinct proxies of soil metal availability were investigated: CaCl2-extractable content dissolved content predicted by a semi-mechanistic model and free ion concentration predicted by a geochemical speciation model. Subcellular partitionings of Cd and Pb were modified along the gradient of metal exposure, while stable Zn partitioning reflected regulation processes. Cd subcellular distribution responded more strongly to increasing soil Cd concentration than the total internal content, when Pb subcellular distribution and total internal content were similarly affected. Free ion concentrations were better descriptors of Cd and Pb subcellular distribution than CaCl2 extractable and dissolved metal concentrations. However, free ion concentrations and soil total metal contents were equivalent descriptors of the subcellular partitioning of Cd and Pb because they were highly correlated. Considering lowly contaminated soils, our results raise the question of the added value of three proxies of metal availability compared to soil total metal content in the assessment of metal bioavailability to earthworm. Copyright © 2015 Elsevier B.V. All rights reserved.

Dynamic hydro-climatic networks in pristine and regulated rivers

NASA Astrophysics Data System (ADS)

Botter, G.; Basso, S.; Lazzaro, G.; Doulatyari, B.; Biswal, B.; Schirmer, M.; Rinaldo, A.

2014-12-01

Flow patterns observed at-a-station are the dynamical byproduct of a cascade of processes involving different compartments of the hydro-climatic network (e.g., climate, rainfall, soil, vegetation) that regulates the transformation of rainfall into streamflows. In complex branching rivers, flow regimes result from the heterogeneous arrangement around the stream network of multiple hydrologic cascades that simultaneously occur within distinct contributing areas. As such, flow regimes are seen as the integrated output of a complex "network of networks", which can be properly characterized by its degree of temporal variability and spatial heterogeneity. Hydrologic networks that generate river flow regimes are dynamic in nature. In pristine rivers, the time-variance naturally emerges at multiple timescales from climate variability (namely, seasonality and inter-annual fluctuations), implying that the magnitude (and the features) of the water flow between two nodes may be highly variable across different seasons and years. Conversely, the spatial distribution of river flow regimes within pristine rivers involves scale-dependent transport features, as well as regional climatic and soil use gradients, which in small and meso-scale catchments (A < 103 km2) are usually mild enough to guarantee quite uniform flow regimes and high spatial correlations. Human-impacted rivers, instead, constitute hybrid networks where observed spatio-temporal patterns are dominated by anthropogenic shifts, such as landscape alterations and river regulation. In regulated rivers, the magnitude and the features of water flows from node to node may change significantly through time due to damming and withdrawals. However, regulation may impact river regimes in a spatially heterogeneous manner (e.g. in localized river reaches), with a significant decrease of spatial correlations and network connectivity. Provided that the spatial and temporal dynamics of flow regimes in complex rivers may strongly impact important biotic processes involved in the river food web (e.g. biofilm and riparian vegetation dynamics), the study of rivers as dynamic networks provides important clues to water management strategies and freshwater ecosystem studies.

Global Transcriptome Analysis Reveals Acclimation-Primed Processes Involved in the Acquisition of Desiccation Tolerance in Boea hygrometrica.

PubMed

Zhu, Yan; Wang, Bo; Phillips, Jonathan; Zhang, Zhen-Nan; Du, Hong; Xu, Tao; Huang, Lian-Cheng; Zhang, Xiao-Fei; Xu, Guang-Hui; Li, Wen-Long; Wang, Zhi; Wang, Ling; Liu, Yong-Xiu; Deng, Xin

2015-07-01

Boea hygrometrica resurrection plants require a period of acclimation by slow soil-drying in order to survive a subsequent period of rapid desiccation. The molecular basis of this observation was investigated by comparing gene expression profiles under different degrees of water deprivation. Transcripts were clustered according to the expression profiles in plants that were air-dried (rapid desiccation), soil-dried (gradual desiccation), rehydrated (acclimated) and air-dried after acclimation. Although phenotypically indistinguishable, it was shown by principal component analysis that the gene expression profiles in rehydrated, acclimated plants resemble those of desiccated plants more closely than those of hydrated acclimated plants. Enrichment analysis based on gene ontology was performed to deconvolute the processes that accompanied desiccation tolerance. Transcripts associated with autophagy and α-tocopherol accumulation were found to be activated in both air-dried, acclimated plants and soil-dried non-acclimated plants. Furthermore, transcripts associated with biosynthesis of ascorbic acid, cell wall catabolism, chaperone-assisted protein folding, respiration and macromolecule catabolism were activated and maintained during soil-drying and rehydration. Based on these findings, we hypothesize that activation of these processes leads to the establishment of an optimal physiological and cellular state that enables tolerance during rapid air-drying. Our study provides a novel insight into the transcriptional regulation of critical priming responses to enable survival following rapid dehydration in B. hygrometrica. © The Author 2015. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Effects of subsurface aeration and trinexapac-ethyl application on soil microbial communities in a creeping bentgrass putting green

USGS Publications Warehouse

Feng, Y.; Stoeckel, D.M.; Van Santen, E.; Walker, R.H.

2002-01-01

The sensitivity of creeping bentgrass (Agrostis palustris Huds.) to the extreme heat found in the southeastern United States has led to the development of new greens-management methods. The purpose of this study was to examine the effects of subsurface aeration and growth regulator applications on soil microbial communities and mycorrhizal colonization rates in a creeping bentgrass putting green. Two cultivars (Crenshaw and Penncross), a growth regulator (trinexapacethyl), and subsurface aeration were evaluated in cool and warm seasons. Total bacterial counts were higher in whole (unsieved) soils than in sieved soils, indicating a richer rhizosphere soil environment. Mycorrhizal infection rates were higher in trinexapac-ethyl (TE) treated plants. High levels of hyphal colonization and relatively low arbuscule and vesicle occurrence were observed. Principal components analysis of whole-soil fatty acid methyl ester (FAME) profiles indicated that warm-season microbial populations in whole and sieved soils had similar constituents, but the populations differed in the cool season. FAME profiles did not indicate that subsurface aeration and TE application affected soil microbial community structure. This is the first reported study investigating the influences of subsurface aeration and TE application on soil microorganisms in a turfgrass putting green soil.

Measurements, interpretation and climate change effects evaluation for pyroclastic bare soil evaporation

NASA Astrophysics Data System (ADS)

Rianna, G.; Pagano, L.; Mercogliano, P.; Montesarchio, M.

2012-12-01

A physical model has been designed to achieve the following goals: to mark out the main features of the soil-atmosphere interaction; to quantify the water and energy fluxes through the soil surface during several years; to monitor the trends of the main variables regulating the hydraulic and thermal conditions. It is constituted by a soil volume (about 1mc) exposed to weather forcing; it is instrumented at four depths by sensors for measuring suction, water content and temperature. Therefore, a station allows knowing the meteo variables (rainfall, wind velocity and direction, air temperature, air pressure and relative humidity) and the two directly measurable components of the energy balance at the soil surface (net radiation and soil heat flux). Under the soil specimen, three shear beam load cells measure the soil weight and, hence, because the soil particles weight can be assumed as constant, the sample water storage. As first attempt, the soil surface is kept bare to avoid the complications led by overlapping processes induced by vegetation (interception, transpiration). Since May 2010, the soil involved in testing is pyroclastic material (silty sand) representative of air fall deposits covering a large part of Campania (South Italy) and erupted in the last 10,000 years by different volcanic centres (Phlegrean fields, Vesuvius). Because of their genesis, these soils show peculiar features: high porosity, low weight of soil unit volume, high water retention capacity; they cause an unusual hydraulic behaviour, halfway between coarse and fine soils in terms of saturated hydraulic permeability and mean slope of soil-water characteristic curve. In turn, these elements induce, among other things, that the currently adopted predictive approaches to estimate, for example, infiltration and evaporation processes are not directly suitable for these soils as the available parameters, even for grain sizes comparable to those of pyroclastic soils, fail to reproduce the observed trends. The measurements of water weight changes obtained during the dry days of the monitoring time span (2010-2012) furnish an adequately accurate estimate of daily evaporation values and so they can be used to calibrate the parameters of an approach for estimating evaporation method; in this work, the selected model is FAO-56 Dual Crop Coefficient Method for the case of bare soil (Allen et al., 2005) Firstly,the performance of method adopting the set of parameters recommended for soils with the same grain size is tested ; checking poor capability of this set parameters to reproduce the observed values, is retrieved the set for which is obtained best fitting between monitored and estimated values. The dataset covering the monitoring period and the approach so developed can be then used for a preliminary estimate of the effects of incoming climatic changes on evaporation processes in a specific Mediterranean context. Measured air temperatures and precipitation values are modified according their predicted climate anomalies for examined area (Giorgi and Lionello, 2008) in the XXI century; the effect of these variations on potential and actual evaporation through FAO approach are then investigated.

Worldwide Regulations of Standard Values of Pesticides for Human Health Risk Control: A Review.

PubMed

Li, Zijian; Jennings, Aaron

2017-07-22

Abstract : The impact of pesticide residues on human health is a worldwide problem, as human exposure to pesticides can occur through ingestion, inhalation, and dermal contact. Regulatory jurisdictions have promulgated the standard values for pesticides in residential soil, air, drinking water, and agricultural commodity for years. Until now, more than 19,400 pesticide soil regulatory guidance values (RGVs) and 5400 pesticide drinking water maximum concentration levels (MCLs) have been regulated by 54 and 102 nations, respectively. Over 90 nations have provided pesticide agricultural commodity maximum residue limits (MRLs) for at least one of the 12 most commonly consumed agricultural foods. A total of 22 pesticides have been regulated with more than 100 soil RGVs, and 25 pesticides have more than 100 drinking water MCLs. This research indicates that those RGVs and MCLs for an individual pesticide could vary over seven (DDT drinking water MCLs), eight (Lindane soil RGVs), or even nine (Dieldrin soil RGVs) orders of magnitude. Human health risk uncertainty bounds and the implied total exposure mass burden model were applied to analyze the most commonly regulated and used pesticides for human health risk control. For the top 27 commonly regulated pesticides in soil, there are at least 300 RGVs (8% of the total) that are above all of the computed upper bounds for human health risk uncertainty. For the top 29 most-commonly regulated pesticides in drinking water, at least 172 drinking water MCLs (5% of the total) exceed the computed upper bounds for human health risk uncertainty; while for the 14 most widely used pesticides, there are at least 310 computed implied dose limits (28.0% of the total) that are above the acceptable daily intake values. The results show that some worldwide standard values were not derived conservatively enough to avoid human health risk by the pesticides, and that some values were not computed comprehensively by considering all major human exposure pathways.

Worldwide Regulations of Standard Values of Pesticides for Human Health Risk Control: A Review

PubMed Central

Jennings, Aaron

2017-01-01

The impact of pesticide residues on human health is a worldwide problem, as human exposure to pesticides can occur through ingestion, inhalation, and dermal contact. Regulatory jurisdictions have promulgated the standard values for pesticides in residential soil, air, drinking water, and agricultural commodity for years. Until now, more than 19,400 pesticide soil regulatory guidance values (RGVs) and 5400 pesticide drinking water maximum concentration levels (MCLs) have been regulated by 54 and 102 nations, respectively. Over 90 nations have provided pesticide agricultural commodity maximum residue limits (MRLs) for at least one of the 12 most commonly consumed agricultural foods. A total of 22 pesticides have been regulated with more than 100 soil RGVs, and 25 pesticides have more than 100 drinking water MCLs. This research indicates that those RGVs and MCLs for an individual pesticide could vary over seven (DDT drinking water MCLs), eight (Lindane soil RGVs), or even nine (Dieldrin soil RGVs) orders of magnitude. Human health risk uncertainty bounds and the implied total exposure mass burden model were applied to analyze the most commonly regulated and used pesticides for human health risk control. For the top 27 commonly regulated pesticides in soil, there are at least 300 RGVs (8% of the total) that are above all of the computed upper bounds for human health risk uncertainty. For the top 29 most-commonly regulated pesticides in drinking water, at least 172 drinking water MCLs (5% of the total) exceed the computed upper bounds for human health risk uncertainty; while for the 14 most widely used pesticides, there are at least 310 computed implied dose limits (28.0% of the total) that are above the acceptable daily intake values. The results show that some worldwide standard values were not derived conservatively enough to avoid human health risk by the pesticides, and that some values were not computed comprehensively by considering all major human exposure pathways. PMID:28737697

Properties of Soil Pore Space Regulate Pathways of Plant Residue Decomposition and Community Structure of Associated Bacteria

PubMed Central

Negassa, Wakene C.; Guber, Andrey K.; Kravchenko, Alexandra N.; Marsh, Terence L.; Hildebrandt, Britton; Rivers, Mark L.

2015-01-01

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO2 emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis of amplified 16S–18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75–80% of the added plant residue was decomposed, cumulative CO2 emission constituted 1,200 µm C g-1 soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO2 emission constituted 2,000 µm C g-1 soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO2 emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes. PMID:25909444

Properties of soil pore space regulate pathways of plant residue decomposition and community structure of associated bacteria

DOE PAGES

Negassa, Wakene C.; Guber, Andrey K.; Kravchenko, Alexandra N.; ...

2015-07-01

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO₂ emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis ofmore » amplified 16S–18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75–80% of the added plant residue was decomposed, cumulative CO₂ emission constituted 1,200 µm C g⁻¹ soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO₂ emission constituted 2,000 µm C g⁻¹ soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO₂ emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes.« less

Properties of soil pore space regulate pathways of plant residue decomposition and community structure of associated bacteria.

PubMed

Negassa, Wakene C; Guber, Andrey K; Kravchenko, Alexandra N; Marsh, Terence L; Hildebrandt, Britton; Rivers, Mark L

2015-01-01

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO2 emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis of amplified 16S-18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75-80% of the added plant residue was decomposed, cumulative CO2 emission constituted 1,200 µm C g(-1) soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO2 emission constituted 2,000 µm C g(-1) soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO2 emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes.

Properties of soil pore space regulate pathways of plant residue decomposition and community structure of associated bacteria

DOE Office of Scientific and Technical Information (OSTI.GOV)

Negassa, Wakene C.; Guber, Andrey K.; Kravchenko, Alexandra N.

Physical protection of soil carbon (C) is one of the important components of C storage. However, its exact mechanisms are still not sufficiently lucid. The goal of this study was to explore the influence of soil structure, that is, soil pore spatial arrangements, with and without presence of plant residue on (i) decomposition of added plant residue, (ii) CO₂ emission from soil, and (iii) structure of soil bacterial communities. The study consisted of several soil incubation experiments with samples of contrasting pore characteristics with/without plant residue, accompanied by X-ray micro-tomographic analyses of soil pores and by microbial community analysis ofmore » amplified 16S–18S rRNA genes via pyrosequencing. We observed that in the samples with substantial presence of air-filled well-connected large (>30 µm) pores, 75–80% of the added plant residue was decomposed, cumulative CO₂ emission constituted 1,200 µm C g⁻¹ soil, and movement of C from decomposing plant residue into adjacent soil was insignificant. In the samples with greater abundance of water-filled small pores, 60% of the added plant residue was decomposed, cumulative CO₂ emission constituted 2,000 µm C g⁻¹ soil, and the movement of residue C into adjacent soil was substantial. In the absence of plant residue the influence of pore characteristics on CO₂ emission, that is on decomposition of the native soil organic C, was negligible. The microbial communities on the plant residue in the samples with large pores had more microbial groups known to be cellulose decomposers, that is, Bacteroidetes, Proteobacteria, Actinobacteria, and Firmicutes, while a number of oligotrophic Acidobacteria groups were more abundant on the plant residue from the samples with small pores. This study provides the first experimental evidence that characteristics of soil pores and their air/water flow status determine the phylogenetic composition of the local microbial community and directions and magnitudes of soil C decomposition processes.« less

Procedures for sampling radium-contaminated soils

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fleischhauer, H.L.

Two procedures for sampling the surface layer (0 to 15 centimeters) of radium-contaminated soil are recommended for use in remedial action projects. Both procedures adhere to the philosophy that soil samples should have constant geometry and constant volume in order to ensure uniformity. In the first procedure, a ''cookie cutter'' fashioned from pipe or steel plate, is driven to the desired depth by means of a slide hammer, and the sample extracted as a core or plug. The second procedure requires use of a template to outline the sampling area, from which the sample is obtained using a trowel ormore » spoon. Sampling to the desired depth must then be performed incrementally. Selection of one procedure over the other is governed primarily by soil conditions, the cookie cutter being effective in nongravelly soils, and the template procedure appropriate for use in both gravelly and nongravelly soils. In any event, a minimum sample volume of 1000 cubic centimeters is recommended. The step-by-step procedures are accompanied by a description of the minimum requirements for sample documentation. Transport of the soil samples from the field is then addressed in a discussion of the federal regulations for shipping radioactive materials. Interpretation of those regulations, particularly in light of their application to remedial action soil-sampling programs, is provided in the form of guidance and suggested procedures. Due to the complex nature of the regulations, however, there is no guarantee that our interpretations of them are complete or entirely accurate. Preparation of soil samples for radium-226 analysis by means of gamma-ray spectroscopy is described.« less

Heterogeneity of soil carbon pools and fluxes in a channelized and a restored floodplain section (Thur River, Switzerland)

NASA Astrophysics Data System (ADS)

Samaritani, E.; Shrestha, J.; Fournier, B.; Frossard, E.; Gillet, F.; Guenat, C.; Niklaus, P. A.; Pasquale, N.; Tockner, K.; Mitchell, E. A. D.; Luster, J.

2011-06-01

Due to their spatial complexity and dynamic nature, floodplains provide a wide range of ecosystem functions. However, because of flow regulation, many riverine floodplains have lost their characteristic heterogeneity. Restoration of floodplain habitats and the rehabilitation of key ecosystem functions, many of them linked to organic carbon (C) dynamics in riparian soils, has therefore become a major goal of environmental policy. The fundamental understanding of the factors that drive the processes involved in C cycling in heterogeneous and dynamic systems such as floodplains is however only fragmentary. We quantified soil organic C pools (microbial C and water extractable organic C) and fluxes (soil respiration and net methane production) in functional process zones of adjacent channelized and widened sections of the Thur River, NE Switzerland, on a seasonal basis. The objective was to assess how spatial heterogeneity and temporal variability of these pools and fluxes relate to physicochemical soil properties on one hand, and to soil environmental conditions and flood disturbance on the other hand. Overall, factors related to seasonality and flooding (temperature, water content, organic matter input) affected soil C dynamics more than soil properties did. Coarse-textured soils on gravel bars in the restored section were characterized by low base-levels of organic C pools due to low TOC contents. However, frequent disturbance by flood pulses led to high heterogeneity with temporarily and locally increased C pools and soil respiration. By contrast, in stable riparian forests, the finer texture of the soils and corresponding higher TOC contents and water retention capacity led to high base-levels of C pools. Spatial heterogeneity was low, but major floods and seasonal differences in temperature had additional impacts on both pools and fluxes. Soil properties and base levels of C pools in the dam foreland of the channelized section were similar to the gravel bars of the restored section. By contrast, spatial heterogeneity, seasonal effects and flood disturbance were similar to the forests, except for indications of high CH4 production that are explained by long travel times of infiltrating water favoring reducing conditions. Overall, the restored section exhibited both a larger range and a higher heterogeneity of organic C pools and fluxes as well as a higher plant biodiversity than the channelized section. This suggests that restoration has indeed led to an increase in functional diversity.

Heterogeneity of soil carbon pools and fluxes in a channelized and a restored floodplain section (Thur River, Switzerland)

NASA Astrophysics Data System (ADS)

Samaritani, E.; Shrestha, J.; Fournier, B.; Frossard, E.; Gillet, F.; Guenat, C.; Niklaus, P. A.; Tockner, K.; Mitchell, E. A. D.; Luster, J.

2011-01-01

Due to their spatial complexity and dynamic nature, floodplains provide a wide range of ecosystem functions. However, because of flow regulation, many riverine floodplains have lost their characteristic heterogeneity. Restoration of floodplain habitats and the rehabilitation of key ecosystem functions has therefore become a major goal of environmental policy. Many important ecosystem functions are linked to organic carbon (C) dynamics in riparian soils. The fundamental understanding of the factors that drive the processes involved in C cycling in heterogeneous and dynamic systems such as floodplains is however only fragmentary. We quantified soil organic C pools (microbial C and water extractable organic C) and fluxes (soil respiration and net methane production) in functional process zones of adjacent channelized and widened sections of the Thur River, NE Switzerland, on a seasonal basis. The objective was to assess how spatial heterogeneity and temporal variability of these pools and fluxes relate to physicochemical soil properties on one hand, and to soil environmental conditions and flood disturbance on the other hand. Overall, factors related to seasonality and flooding (temperature, water content, organic matter input) affected soil C dynamics more than soil properties did. Coarse-textured soils on gravel bars in the restored section were characterized by low base-levels of organic C pools due to low TOC contents. However, frequent disturbance by flood pulses led to high heterogeneity with temporarily and locally increased pools and soil respiration. By contrast, in stable riparian forests, the finer texture of the soils and corresponding higher TOC contents and water retention capacity led to high base-levels of C pools. Spatial heterogeneity was low, but major floods and seasonal differences in temperature had additional impacts on both pools and fluxes. Soil properties and base levels of C pools in the dam foreland of the channelized section were similar to the gravel bars of the restored section. By contrast, spatial heterogeneity, seasonal effects and flood disturbance were similar to the forests, except for indications of high CH4 production that are explained by long travel times of infiltrating water favouring reducing conditions. Overall, the restored section exhibited both a larger range and a higher heterogeneity of organic C pools and fluxes as well as a higher plant biodiversity than the channelized section. This suggests that restoration has indeed led to an increase in functional diversity.

Competing for phosphors under changing redox conditions: biological versus geochemical sinks

NASA Astrophysics Data System (ADS)

Gross, A.; Pett-Ridge, J.; Silver, W. L.

2016-12-01

Competing for phosphorus under changing redox conditions: biological versus geochemical sinksAvner Gross1, Jennifer Pett-Ridge2 and Whendee L Silver1 University of California Berkeley, Department of Environmental Science, Policy, & Management, Berkeley, CA, USA. Lawrence Livermore National Laboratory, Physical and Life Science Directorate, Livermore, CA, USA. The cycling of phosphorous (P) in highly weathered, humid tropical forest soils is tightly regulated by P sorption dynamics to the surfaces of Fe(III) (hydr)oxides and root and microbial demands for P. Periods of anoxic soil conditions, which are common in humid environments, induce the reduction of Fe (III) to Fe (II) and may release sorbed P into the soil solution. The microbial demand for P is influenced by the C and nutrient composition of their available substrates. Therefore, we hypothesize that soil redox conditions and substrate quality and availability will control the partitioning of P between microbial biomass and the soil mineral phase. The aim of this study was to examine how fluctuations in soil redox conditions and changes in microbial P demand affect the fate of new P that enters the soil solution. To achieve this aim we conducted a series of soil incubation experiments using a wet tropical soil from Puerto Rico (where redox conditions and P availability naturally oscillate) with a single pulse of phosphate (PO4), altering both the microbial activity and redox conditions. To follow the fate the added P, the added phosphate was labeled with 18O. As the exchange of oxygen between phosphate and water only occurs during biological processes, P-18O labeling can be used as an indicator of microbial use. To quantify sizes of the microbial and mineral P pools we used traditional chemical extractions in the bulk scale. We used NanoSIMS isotopic imaging to map the distribution of P-16O and P-18O and co-localization with Fe minerals at the nano scale. Our results show that the amount of the added P fixed by the mineral phase was inversely correlated to the amount of P assimilated by the microbial biomass. In addition, we discovered the iron redox state did not affect the microbial or mineral P pool sizes. Overall, our results indicate the partition of the added P between the biological and mineral pools is regulated by the microbial biomass demands for P.

Spatial pattern formation of microbes at the soil microscale affect soil C and N turnover in an individual-based microbial community model

NASA Astrophysics Data System (ADS)

Kaiser, Christina; Evans, Sarah; Dieckmann, Ulf; Widder, Stefanie

2016-04-01

At the μm-scale, soil is a highly structured and complex environment, both in physical as well as in biological terms, characterized by non-linear interactions between microbes, substrates and minerals. As known from mathematics and theoretical ecology, spatial structure significantly affects the system's behaviour by enabling synergistic dynamics, facilitating diversity, and leading to emergent phenomena such as self-organisation and self-regulation. Such phenomena, however, are rarely considered when investigating mechanisms of microbial soil organic matter turnover. Soil organic matter is the largest terrestrial reservoir for organic carbon (C) and nitrogen (N) and plays a pivotal role in global biogeochemical cycles. Still, the underlying mechanisms of microbial soil organic matter buildup and turnover remain elusive. We explored mechanisms of microbial soil organic matter turnover using an individual-based, stoichiometrically and spatially explicit computer model, which simulates the microbial de-composer system at the soil microscale (i.e. on a grid of 100 x 100 soil microsites). Soil organic matter dynamics in our model emerge as the result of interactions among individual microbes with certain functional traits (f.e. enzyme production rates, growth rates, cell stoichiometry) at the microscale. By degrading complex substrates, and releasing labile substances microbes in our model continusly shape their environment, which in turn feeds back to spatiotemporal dynamics of the microbial community. In order to test the effect of microbial functional traits and organic matter input rate on soil organic matter turnover and C and N storage, we ran the model into steady state using continuous inputs of fresh organic material. Surprisingly, certain parameter settings that induce resource limitation of microbes lead to regular spatial pattern formation (f.e. moving spiral waves) of microbes and substrate at the μm-scale at steady-state. The occurrence of these pattern can be explained by the Turing mechanism. These pattern formation had strong consequences for process rates, as well as for C and N storage in the soil at the steady state: Scenarios that exhibited pattern formation were generally associated with higher C storage at steady state compared to those without pattern formation (i.e. at non-limiting conditions for microbes). Moreover, pattern formation lead to a spatial decoupling of C and N turnover processes, and to a spatial decoupling of microbial N mineralization and N immobilization. Taken together, our theoretical analysis shows that self-organisation may be a feature of the soil decomposer system, with consequences for process rates of microbial C and N turnover. Pattern formation through spatial self-organization, which has been observed on larger spatial scales in other resource-limited communities (e.g., vegetation patterns in arid or wetland eco-systems), may also occur at the soil microscale, leaving its mark on the soil's storage capacity for C and N.

Recovery of microbial community structure and functioning after wildfire in semi-arid environments: optimising methods for monitoring and assessment

NASA Astrophysics Data System (ADS)

Muñoz-Rojas, Miriam; Martini, Dylan; Erickson, Todd; Merritt, David; Dixon, Kingsley

2015-04-01

Introduction In semi-arid areas such as northern Western Australia, wildfires are a natural part of the environment and many ecosystems in these landscapes have evolved and developed a strong relationship with fire. Soil microbial communities play a crucial role in ecosystem processes by regulating the cycling of nutrients via decomposition, mineralization, and immobilization processes. Thus, the structure (e.g. soil microbial biomass) and functioning (e.g. soil microbial activity) of microbial communities, as well as their changes after ecosystem disturbance, can be useful indicators of soil quality and health recovery. In this research, we assess the impacts of fire on soil microbial communities and their recovery in a biodiverse semi-arid environment of Western Australia (Pilbara region). New methods for determining soil microbial respiration as an indicator of microbial activity and soil health are also tested. Methodology Soil samples were collected from 10 similar ecosystems in the Pilbara with analogous native vegetation, but differing levels of post-fire disturbance (i.e. 3 months, 1 year, 5, 7 and 14 years after wildfire). Soil microbial activity was measured with the Solvita test which determines soil microbial respiration rate based on the measurement of the CO2 burst of a dry soil after it is moistened. Soils were dried and re-wetted and a CO2 probe was inserted before incubation at constant conditions of 25°C during 24 h. Measurements were taken with a digital mini spectrometer. Microbial (bacteria and fungi) biomass and community composition were measured by phospholipid fatty acid analysis (PLFA). Results Immediately after the fire (i.e. 3 months), soil microbial activity and microbial biomass are similar to 14 years 'undisturbed' levels (53.18±3.68 ppm CO2-CO and 14.07±0.65 mg kg-1, respectively). However, after the first year post-fire, with larger plant productivity, microbial biomass and microbial activity increase rapidly, peaking after 5-7 years post fire (70.70±8.94 ppm CO2-CO and 21.67±2.62 mg kg-1, respectively). Microbial activity measured with the Solvita test was significantly correlated (R Pearson > 0.7; P < 0.001) with microbial parameters analysed with PLFA such as microbial biomass, bacteria biomass or mycorrhizhal fungi. This method has proven to be reliable, fast and easy to interpret for assessment of soil microbial activity in the recovery of soil quality during the recovery after fire. Keywords Pilbara region, biodiverse ecosystems, microbial biomass, microbial respiration, Solvita test, CO2 burst.

Biochar and microbial signaling: production conditions determine effects on microbial communication.

PubMed

Masiello, Caroline A; Chen, Ye; Gao, Xiaodong; Liu, Shirley; Cheng, Hsiao-Ying; Bennett, Matthew R; Rudgers, Jennifer A; Wagner, Daniel S; Zygourakis, Kyriacos; Silberg, Jonathan J

2013-10-15

Charcoal has a long soil residence time, which has resulted in its production and use as a carbon sequestration technique (biochar). A range of biological effects can be triggered by soil biochar that can positively and negatively influence carbon storage, such as changing the decomposition rate of organic matter and altering plant biomass production. Sorption of cellular signals has been hypothesized to underlie some of these effects, but it remains unknown whether the binding of biochemical signals occurs, and if so, on time scales relevant to microbial growth and communication. We examined biochar sorption of N-3-oxo-dodecanoyl-L-homoserine lactone, an acyl-homoserine lactone (AHL) intercellular signaling molecule used by many gram-negative soil microbes to regulate gene expression. We show that wood biochars disrupt communication within a growing multicellular system that is made up of sender cells that synthesize AHL and receiver cells that express green fluorescent protein in response to an AHL signal. However, biochar inhibition of AHL-mediated cell-cell communication varied, with the biochar prepared at 700 °C (surface area of 301 m(2)/g) inhibiting cellular communication 10-fold more than an equivalent mass of biochar prepared at 300 °C (surface area of 3 m(2)/g). These findings provide the first direct evidence that biochars elicit a range of effects on gene expression dependent on intercellular signaling, implicating the method of biochar preparation as a parameter that could be tuned to regulate microbial-dependent soil processes, like nitrogen fixation and pest attack of root crops.

Biochar and microbial signaling: production conditions determine effects on microbial communication

PubMed Central

Masiello, Caroline A.; Chen, Ye; Gao, Xiaodong; Liu, Shirley; Cheng, Hsiao-Ying; Bennett, Matthew R.; Rudgers, Jennifer A.; Wagner, Daniel S.; Zygourakis, Kyriacos; Silberg, Jonathan J.

2013-01-01

Charcoal has a long soil residence time, which has resulted in its production and use as a carbon sequestration technique (biochar). A range of biological effects can be triggered by soil biochar that can positively and negatively influence carbon storage, such as changing the decomposition rate of organic matter and altering plant biomass production. Sorption of cellular signals has been hypothesized to underlie some of these effects, but it remains unknown whether the binding of biochemical signals occurs, and if so, on time scales relevant to microbial growth and communication. We examined biochar sorption of N-3-oxo-dodecanoyl-L-homoserine lactone, an acyl-homoserine lactone (AHL) intercellular signaling molecule used by many gram-negative soil microbes to regulate gene expression. We show that wood biochars disrupt communication within a growing multicellular system that is made up of sender cells that synthesize AHL and receiver cells that express green fluorescent protein in response to an AHL signal. However, biochar inhibition of AHL-mediated cell-cell communication varied, with the biochar prepared at 700°C (surface area of 301 m2/g) inhibiting cellular communication 10-fold more than an equivalent mass of biochar prepared at 300°C (surface area of 3 m2/g). These findings provide the first direct evidence that biochars elicit a range of effects on gene expression dependent on intercellular signaling, implicating the method of biochar preparation as a parameter that could be tuned to regulate microbial-dependent soil processes, like nitrogen fixation and pest attack of root crops. PMID:24066613

Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.

PubMed

Wu, Renhong; Citovsky, Vitaly

2017-07-01

Plants use specialized root outgrowths, termed root hairs, to enhance acquisition of nutrients and water, help secure anchorage, and facilitate interactions with soil microbiome. One of the major regulators of this process is GLABRA2 (GL2), a transcriptional repressor of root hair differentiation. However, regulation of the GL2-function is relatively well characterized, it remains completely unknown whether GL2 itself functions in complex with other transcriptional regulators. We identified GIR1 and GIR2, a plant-specific two-member family of closely related proteins that interact with GL2. Loss-of-function mutants of GIR1 and GIR2 enhanced development of root hair whereas gain-of-function mutants repressed it. Thus, GIR1 and GIR2 might function as adaptor proteins that associate with GL2 and participate in control of root hair formation. Copyright © 2017 Elsevier Inc. All rights reserved.

Chiral chemicals as tracers of atmospheric sources and fate processes in a world of changing climate.

PubMed

F Bidleman, Terry; M Jantunen, Liisa; Binnur Kurt-Karakus, Perihan; Wong, Fiona; Hung, Hayley; Ma, Jianmin; Stern, Gary; Rosenberg, Bruno

2013-01-01

Elimination of persistent organic pollutants (POPs) under national and international regulations reduces "primary" emissions, but "secondary" emissions continue from residues deposited in soil, water, ice and vegetation during former years of usage. In a future, secondary source controlled world, POPs will follow the carbon cycle and biogeochemical processes will determine their transport, accumulation and fate. Climate change is likely to affect mobilisation of POPs through e.g., increased temperature, altered precipitation and wind patterns, flooding, loss of ice cover in polar regions, melting glaciers, and changes in soil and water microbiology which affect degradation and transformation. Chiral compounds offer advantages for following transport and fate pathways because of their ability to distinguish racemic (newly released or protected from microbial attack) and nonracemic (microbially degraded) sources. This paper discusses the rationale for this approach and suggests applications where chiral POPs could aid investigation of climate-mediated exchange and degradation processes. Multiyear measurements of two chiral POPs, trans-chlordane and α-HCH, at a Canadian Arctic air monitoring station show enantiomer compositions which cycle seasonally, suggesting varying source contributions which may be under climatic control. Large-scale shifts in the enantioselective metabolism of chiral POPs in soil and water might influence the enantiomer composition of atmospheric residues, and it would be advantageous to include enantiospecific analysis in POPs monitoring programs.

Chiral Chemicals as Tracers of Atmospheric Sources and Fate Processes in a World of Changing Climate

PubMed Central

F. Bidleman, Terry; M. Jantunen, Liisa; Binnur Kurt-Karakus, Perihan; Wong, Fiona; Hung, Hayley; Ma, Jianmin; Stern, Gary; Rosenberg, Bruno

2013-01-01

Elimination of persistent organic pollutants (POPs) under national and international regulations reduces “primary” emissions, but “secondary” emissions continue from residues deposited in soil, water, ice and vegetation during former years of usage. In a future, secondary source controlled world, POPs will follow the carbon cycle and biogeochemical processes will determine their transport, accumulation and fate. Climate change is likely to affect mobilisation of POPs through e.g., increased temperature, altered precipitation and wind patterns, flooding, loss of ice cover in polar regions, melting glaciers, and changes in soil and water microbiology which affect degradation and transformation. Chiral compounds offer advantages for following transport and fate pathways because of their ability to distinguish racemic (newly released or protected from microbial attack) and nonracemic (microbially degraded) sources. This paper discusses the rationale for this approach and suggests applications where chiral POPs could aid investigation of climate-mediated exchange and degradation processes. Multiyear measurements of two chiral POPs, trans-chlordane and α-HCH, at a Canadian Arctic air monitoring station show enantiomer compositions which cycle seasonally, suggesting varying source contributions which may be under climatic control. Large-scale shifts in the enantioselective metabolism of chiral POPs in soil and water might influence the enantiomer composition of atmospheric residues, and it would be advantageous to include enantiospecific analysis in POPs monitoring programs. PMID:24349938

Predicting effects of climate change on the composition and function of soil microbial communities

NASA Astrophysics Data System (ADS)

Dubinsky, E.; Brodie, E.; Myint, C.; Ackerly, D.; van Nostrand, J.; Bird, J.; Zhou, J.; Andersen, G.; Firestone, M.

2008-12-01

Complex soil microbial communities regulate critical ecosystem processes that will be altered by climate change. A critical step towards predicting the impacts of climate change on terrestrial ecosystems is to determine the primary controllers of soil microbial community composition and function, and subsequently evaluate climate change scenarios that alter these controllers. We surveyed complex soil bacterial and archaeal communities across a range of climatic and edaphic conditions to identify critical controllers of soil microbial community composition in the field and then tested the resulting predictions using a 2-year manipulation of precipitation and temperature using mesocosms of California annual grasslands. Community DNA extracted from field soils sampled from six different ecosystems was assayed for bacterial and archaeal communities using high-density phylogenetic microarrays as well as functional gene arrays. Correlations among the relative abundances of thousands of microbial taxa and edaphic factors such as soil moisture and nutrient content provided a basis for predicting community responses to changing soil conditions. Communities of soil bacteria and archaea were strongly structured by single environmental predictors, particularly variables related to soil water. Bacteria in the Actinomycetales and Bacilli consistently demonstrated a strong negative response to increasing soil moisture, while taxa in a greater variety of lineages responded positively to increasing soil moisture. In the climate change experiment, overall bacterial community structure was impacted significantly by total precipitation but not by plant species. Changes in soil moisture due to decreased rainfall resulted in significant and predictable alterations in community structure. Over 70% of the bacterial taxa in common with the cross-ecosystem study responded as predicted to altered precipitation, with the most conserved response from Actinobacteria. The functional consequences of these predictable changes in community composition were measured with functional arrays that detect genes involved in the metabolism of carbon, nitrogen and other elements. The response of soil microbial communities to altered precipitation can be predicted from the distribution of microbial taxa across moisture gradients.

Biogeochemical cycles and biodiversity as key drivers of ecosystem services provided by soils

NASA Astrophysics Data System (ADS)

Smith, P.; Cotrufo, M. F.; Rumpel, C.; Paustian, K.; Kuikman, P. J.; Elliott, J. A.; McDowell, R.; Griffiths, R. I.; Asakawa, S.; Bustamante, M.; House, J. I.; Sobocká, J.; Harper, R.; Pan, G.; West, P. C.; Gerber, J. S.; Clark, J. M.; Adhya, T.; Scholes, R. J.; Scholes, M. C.

2015-11-01

Soils play a pivotal role in major global biogeochemical cycles (carbon, nutrient, and water), while hosting the largest diversity of organisms on land. Because of this, soils deliver fundamental ecosystem services, and management to change a soil process in support of one ecosystem service can either provide co-benefits to other services or result in trade-offs. In this critical review, we report the state-of-the-art understanding concerning the biogeochemical cycles and biodiversity in soil, and relate these to the provisioning, regulating, supporting, and cultural ecosystem services which they underpin. We then outline key knowledge gaps and research challenges, before providing recommendations for management activities to support the continued delivery of ecosystem services from soils. We conclude that, although soils are complex, there are still knowledge gaps, and fundamental research is still needed to better understand the relationships between different facets of soils and the array of ecosystem services they underpin, enough is known to implement best practices now. There is a tendency among soil scientists to dwell on the complexity and knowledge gaps rather than to focus on what we do know and how this knowledge can be put to use to improve the delivery of ecosystem services. A significant challenge is to find effective ways to share knowledge with soil managers and policy makers so that best management can be implemented. A key element of this knowledge exchange must be to raise awareness of the ecosystems services underpinned by soils and thus the natural capital they provide. We know enough to start moving in the right direction while we conduct research to fill in our knowledge gaps. The lasting legacy of the International Year of Soils in 2015 should be for soil scientists to work together with policy makers and land managers to put soils at the centre of environmental policy making and land management decisions.

Difficulties in the evaluation and measuring of soil water infiltration

NASA Astrophysics Data System (ADS)

Pla-Sentís, Ildefonso

2013-04-01

Soil water infiltration is the most important hydrological parameter for the evaluation and diagnosis of the soil water balance and soil moisture regime. Those balances and regimes are the main regulating factors of the on site water supply to plants and other soil organisms and of other important processes like runoff, surface and mass erosion, drainage, etc, affecting sedimentation, flooding, soil and water pollution, water supply for different purposes (population, agriculture, industries, hydroelectricity), etc. Therefore the evaluation and measurement of water infiltration rates has become indispensable for the evaluation and modeling of the previously mentioned processes. Infiltration is one of the most difficult hydrological parameters to evaluate or measure accurately. Although the theoretical aspects of the process of soil water infiltration are well known since the middle of the past century, when several methods and models were already proposed for the evaluation of infiltration, still nowadays such evaluation is not frequently enough accurate for the purposes being used. This is partially due to deficiencies in the methodology being used for measuring infiltration, including some newly proposed methods and equipments, and in the use of non appropriate empirical models and approaches. In this contribution we present an analysis and discussion about the main difficulties found in the evaluation and measurement of soil water infiltration rates, and the more commonly committed errors, based on the past experiences of the author in the evaluation of soil water infiltration in many different soils and land conditions, and in their use for deducing soil water balances under variable and changing climates. It is concluded that there are not models or methods universally applicable to any soil and land condition, and that in many cases the results are significantly influenced by the way we use a particular method or instrument, and by the alterations in the soil conditions by the land management, but also due to the manipulation of the soil before and during the measurement. Direct "in situ" field evaluations have to be preferred in any case to indirect deductions from other soil characteristics measured under laboratory conditions in the same soils, or in other soils, through the so called "pedo-transfer" functions, or through the use of stochastic models such as the SCS Curve Number Method, or of other models using empirical or physical approaches, which have demonstrated to be of limited value in most of the cases. References Philip, J. R., 1954., An infiltration equation with physical significance: Soil Sci..,v. 77, p. 153-157. Philip, J. R., 1958. The theory of infiltration, pt. 7: Soil Sci., v. 85, no. 6, p. 333-337. Pla, I.1981. Simuladores de lluvia para el estudio de relaciones suelo-agua bajo agricultura de secano en los trópicos. Rev. Fac. Agron. XII(1-2):81-93.Maracay (Venezuela) Pla, I. 1986. A routine laboratory index to predict the effects of soil sealing on soil and water conservation. En "Assesment of Soil Surface Sealing and Crusting". 154-162.State Univ. of Ghent.Gante (Bélgica Pla, I., 1997. A soil water balance model for monitoring soil erosion processes and effects on steep lands in the tropics. Soil Technology. 11(1):17-30. Elsevier Pla, I., M.C. Ramos, S. Nacci, F. Fonseca y X. Abreu. 2005. Soil moisture regime in dryland vineyards of Catalunya (Spain) as influenced by climate, soil and land management. "Integrated Soil and Water Management for Orchard Development". FAO Land and Water Bulletin 10. 41-49. Roma (Italia). Pla, I., 2006. Hydrological approach for assessing desertification processes in the Mediterranean region. In W.G. Kepner et al. (Editors), Desertification in the Mediterranean Region. A Security Issue. 579-600 Springer. Heidelberg (Germany) Pla, I. 2011. Evaluación y Modelización Hidrológica para el Diagnóstico y Prevención de "Desastres Naturales". Gestión y Ambiente 14 (3): 17-22. UN-Medellín (Colombia). ISSN 0124.177X Pla, I. 2011. Medición y evaluación de propiedades físicas de los suelos: dificultades y errores más frecuentes. II-Propiedades hidrológicas. Suelos Ecuatoriales 40 (2): 94-127 Reynolds W.D., B.T. Bowman, R.R. Brunke, C.F. Drury and C.S. Tan. 2000. Comparison of Tension Infiltrometer, Pressure Infiltrometer, and Soil Core Estimates of Saturated Hydraulic Conductivity . Soil Science Society of America Journal 64:478-484 Richards, L. A., 1952. Report of the Subcommittee on Permeability and Infiltration, Committee on Terminology, Soil Science Society of America: Soil Sci. Soc.America Proc., v. 16, p. 85-88. Segal, E., S.A.Bradford, P. Shouse; N. Lazarovich, and D. Corwin. 2008. Integration of Hard and Soft Data to Characterize Field-Scale Hydraulic Properties for Flow and Transport Studies. Vadose Zone J 7:878-889 Young, E. 1991. Infiltration measurements, a review. Hydrological processes 5: 309-320

Gap assessment in current soil monitoring networks across Europe for measuring soil functions

NASA Astrophysics Data System (ADS)

van Leeuwen, J. P.; Saby, N. P. A.; Jones, A.; Louwagie, G.; Micheli, E.; Rutgers, M.; Schulte, R. P. O.; Spiegel, H.; Toth, G.; Creamer, R. E.

2017-12-01

Soil is the most important natural resource for life on Earth after water. Given its fundamental role in sustaining the human population, both the availability and quality of soil must be managed sustainably and protected. To ensure sustainable management we need to understand the intrinsic functional capacity of different soils across Europe and how it changes over time. Soil monitoring is needed to support evidence-based policies to incentivise sustainable soil management. To this aim, we assessed which soil attributes can be used as potential indicators of five soil functions; (1) primary production, (2) water purification and regulation, (3) carbon sequestration and climate regulation, (4) soil biodiversity and habitat provisioning and (5) recycling of nutrients. We compared this list of attributes to existing national (regional) and EU-wide soil monitoring networks. The overall picture highlighted a clearly unbalanced dataset, in which predominantly chemical soil parameters were included, and soil biological and physical attributes were severely under represented. Methods applied across countries for indicators also varied. At a European scale, the LUCAS-soil survey was evaluated and again confirmed a lack of important soil biological parameters, such as C mineralisation rate, microbial biomass and earthworm community, and soil physical measures such as bulk density. In summary, no current national or European monitoring system exists which has the capacity to quantify the five soil functions and therefore evaluate multi-functional capacity of a soil and in many countries no data exists at all. This paper calls for the addition of soil biological and some physical parameters within the LUCAS-soil survey at European scale and for further development of national soil monitoring schemes.

Environmental contamination and human exposure to dioxin-related compounds in e-waste recycling sites of developing countries.

PubMed

Tue, Nguyen Minh; Takahashi, Shin; Subramanian, Annamalai; Sakai, Shinichi; Tanabe, Shinsuke

2013-07-01

E-waste recycling using uncontrolled processes is a major source of dioxin-related compounds (DRCs), including not only the regulated polychlorinated dibenzo-p-dioxins/dibenzofurans (PCDD/Fs) and dioxin-like polychlorinated biphenyls (DL-PCBs) but also non-regulated brominated and mixed halogenated compounds (PBDD/Fs and PXDD/Fs). Various studies at informal e-waste recycling sites (EWRSs) in Asian developing countries found the soil contamination levels of PCDD/Fs from tens to ten thousand picogram TCDD-equivalents (TEQ) per gram and those of DL-PCBs up to hundreds of picogram TEQ per gram. The air concentration of PCDD/Fs was reported as high as 50 pg TEQ per m(3) in Guiyu, the largest Chinese EWRS. Non-regulated compounds also contributed substantially to the total DL toxicity of the DRC mixtures from e-waste, as evidenced by the high TEQ levels estimated for the currently identifiable PBDD/Fs as well as the large portion of unexplained bioassay-derived TEQ levels in soils/dusts from EWRSs. Considering the high exposure levels estimated for EWRS residents, especially children, comprehensive emission inventories of DRCs from informal e-waste recycling, the identities and toxic potencies of unidentified DRCs released, and their impacts on human health need to be investigated in future studies.

A field day of soil regulation methods

NASA Astrophysics Data System (ADS)

Kempter, Axel; Kempter, Carmen

2015-04-01

The subject Soil plays an important role in the school subject geography. In particular in the upper classes it is expected that the knowledge from the area of Soil can be also be applied in other subjects. Thus, e.g., an assessment of economy and agricultural development and developing potential requires the interweaving of natural- geographic and human-geographic factors. The treatment of the subject Soil requires the desegregation of the results of different fields like Physics, Chemistry and Biology. Accordingly the subject gives cause to professional-covering lessons and offers the opportunity for practical work as well as excursions. Beside the mediation of specialist knowledge and with the support of the methods and action competences, the independent learning and the practical work should have a special emphasis on the field excursion by using stimulating exercises oriented to solving problems and mastering the methods. This aim should be achieved by the interdisciplinary treatment of the subject Soil in the task-oriented learning process on the field day. The methods and experiments should be sensibly selected for both the temporal and material supply constraints. During the field day the pupils had to categorize soil texture, soil colour, soil profile, soil skeleton, lime content, ion exchanger (Soils filter materials), pH-Value, water retention capacity and evidence of different ions like e.g. Fe3+, Mg2+, Cl- and NO3-. The pupils worked on stations and evaluated the data to receive a general view of the ground at the end. According to numbers of locations, amount of time and group size, different procedures can be offered. There are groups of experts who carry out the same experiment at all locations and split for the evaluation in different groups or each group ran through all stations. The results were compared and discussed at the end.

Distinct respiratory responses of soils to complex organic substrate are governed predominantly by soil architecture and its microbial community.

PubMed

Fraser, F C; Todman, L C; Corstanje, R; Deeks, L K; Harris, J A; Pawlett, M; Whitmore, A P; Ritz, K

2016-12-01

Factors governing the turnover of organic matter (OM) added to soils, including substrate quality, climate, environment and biology, are well known, but their relative importance has been difficult to ascertain due to the interconnected nature of the soil system. This has made their inclusion in mechanistic models of OM turnover or nutrient cycling difficult despite the potential power of these models to unravel complex interactions. Using high temporal-resolution respirometery (6 min measurement intervals), we monitored the respiratory response of 67 soils sampled from across England and Wales over a 5 day period following the addition of a complex organic substrate (green barley powder). Four respiratory response archetypes were observed, characterised by different rates of respiration as well as different time-dependent patterns. We also found that it was possible to predict, with 95% accuracy, which type of respiratory behaviour a soil would exhibit based on certain physical and chemical soil properties combined with the size and phenotypic structure of the microbial community. Bulk density, microbial biomass carbon, water holding capacity and microbial community phenotype were identified as the four most important factors in predicting the soils' respiratory responses using a Bayesian belief network. These results show that the size and constitution of the microbial community are as important as physico-chemical properties of a soil in governing the respiratory response to OM addition. Such a combination suggests that the 'architecture' of the soil, i.e. the integration of the spatial organisation of the environment and the interactions between the communities living and functioning within the pore networks, is fundamentally important in regulating such processes.

The role of soil microbiology in soil health

USDA-ARS?s Scientific Manuscript database

Microbial diversity in the rhizosphere is enormous. The complex plant-associated microbial community, or second genome of the plant, is crucial for plant health and soil function. Microbes are active in decomposition, release mineralizable nutrients, synthesize plant growth regulators, degrade/inact...

Release of dissolved phosphorus from riparian vegetated buffer strips: a field assessment of mechanisms and risks

NASA Astrophysics Data System (ADS)

Gruau, Gerard; Gu, Sen; Petitjean, Patrice; Dupas, Rémi; Gascuel-odoux, Chantal; Rumpel, Cornelia

2017-04-01

Riparian vegetated buffer strips (RVBS) have been promoted worldwide as a tool to reduce diffused phosphorus (P) emission from agriculture lands, mainly through their ability to retain particulate P. However, RVBSs are zones of periodic water table fluctuations, which may stimulate the transformation and release of particulate P into mobile dissolved P species. In this study, we evaluated how soil characteristics (P content and P speciation), groundwater dynamics and biogeochemical processes interact together to trigger these transformations and releases, by monitoring over three years molybdate reactive dissolved P (MRDP) and total dissolved P (TDP) concentrations in soil solutions from two RVBSs set in a small agricultural catchment located in Western France, as well as in the stream immediately close of these two RVBSs and at the catchment outlet. Two main mechanisms were evidenced that released dissolved P in the studied RVBSs, each under the control of groundwater dynamics, namely soil rewetting during water table rise after dry periods, and reductive dissolution of soil Fe-(hydr)oxides during prolonged soil water saturation. However, both mechanisms were shown to be strongly temporarily and spatially variable, being dependent on the local topographic slope and the amount and frequency of rainfall. In fact, the third monitored year which was characterized by numerous dry episodes during the winter season resulted in the almost total inhibition of the reductive dissolution release process in the steeper of the two monitored RVBSs. Comparison of sites also revealed strong differences in the size of the mobile P pools as well as in the speciation of the released P, which correlated with differences in the status and speciation of P in soils. Finally, P concentration fluctuations and P speciation variations similar to those observed in RVBS soils were observed in the stream both immediately close to the RVBSs and at the outlet of the catchment, demonstrating the effective transfer of the released P to surface waters. Overall, results from this study show that RVBSs are effective risk zones with regards to P transfer in agricultural landscapes, due to their ability to biogeochemically transform soil retained particular P into more mobile and more bioavailable dissolved P, but that this risk is likely to strongly vary both in space and time, due to the complex interplay of soil characteristics, groundwater dynamics and biogeochemical processes. The hydroclimate is clearly an important driver through its control on inter-annual and seasonal groundwater dynamics, which in turn determine the type and intensity of the activated release processes. However, the first order controlling factor seems to be topography. Topography indeed ultimately controls the spatio-temporal variability of both wet/dry cycle and subsequent redox oscillation frequency, which are the triggers of the release processes. It influences also the input of particle P from cultivated fields through its control on soil erosion. Finally, it could also regulate the mineralization rate of organic P and thus the size of the most bioavailable inorganic P pool in RVBS soils.

Simulated nitrogen deposition reduces CH4 uptake and increases N2O emission from a subtropical plantation forest soil in southern China.

PubMed

Wang, Yongsheng; Cheng, Shulan; Fang, Huajun; Yu, Guirui; Xu, Minjie; Dang, Xusheng; Li, Linsen; Wang, Lei

2014-01-01

To date, few studies are conducted to quantify the effects of reduced ammonium (NH4+) and oxidized nitrate (NO3-) on soil CH4 uptake and N2O emission in the subtropical forests. In this study, NH4Cl and NaNO3 fertilizers were applied at three rates: 0, 40 and 120 kg N ha(-1) yr(-1). Soil CH4 and N2O fluxes were determined twice a week using the static chamber technique and gas chromatography. Soil temperature and moisture were simultaneously measured. Soil dissolved N concentration in 0-20 cm depth was measured weekly to examine the regulation to soil CH4 and N2O fluxes. Our results showed that one year of N addition did not affect soil temperature, soil moisture, soil total dissolved N (TDN) and NH4+-N concentrations, but high levels of applied NH4Cl and NaNO3 fertilizers significantly increased soil NO3(-)-N concentration by 124% and 157%, respectively. Nitrogen addition tended to inhibit soil CH4 uptake, but significantly promoted soil N2O emission by 403% to 762%. Furthermore, NH4+-N fertilizer application had a stronger inhibition to soil CH4 uptake and a stronger promotion to soil N2O emission than NO3(-)-N application. Also, both soil CH4 and N2O fluxes were driven by soil temperature and moisture, but soil inorganic N availability was a key integrator of soil CH4 uptake and N2O emission. These results suggest that the subtropical plantation soil sensitively responses to atmospheric N deposition, and inorganic N rather than organic N is the regulator to soil CH4 uptake and N2O emission.

Soil-vegetation interaction on slopes with shrub encroachment in the central Alps - simple measurements for complex slopes?

NASA Astrophysics Data System (ADS)

Caviezel, Chatrina; Hunziker, Matthias; Kuhn, Nikolaus J.

2013-04-01

In the European Alps many high mountain grasslands which where traditionally used for summer pasturing and haying have been abandoned during the last decades. Abandonment of mown or grazed grasslands causes a shift in vegetation composition, e.g. a change in landscape ecology and geomorphology. From a short term perspective, alpine areas are very fragile ecosystems and are highly sensitive to changing environmental conditions. Land use change can affect runoff and water erosion rates, snow gliding and avalanches as well as mass wasting in high-energy mountain environments. The effect of land use intensification on surface processes is well documented. However, the effect of land abandonment on surface resistance to eroding processes is discussed controversially in literature, particularly in relation to its short term and long-term consequences. Generally, perennial vegetation is considered to improve the mechanical anchoring of loose surface material and the regulation of the soil water budget including the control over the generation of runoff. This study aimed at determining the effect of green alder encroachment in the Unteralpvalley in the Swiss Alps. A range of measurements of the mechanical strength of the soil under green alder stands ranging from 15 to 90 years of age and a control site still used for grazing were conducted. Unlike the literature on the effects of perennial vegetation suggest, the data presented in this study show that soil shear strength is decreasing with along the sampled chronosequence, including compared to the grazed reference site. A possible explanation for this decline in soil stability with shrub encroachment is the loosing effect of the green alder roots on the soil structure, which causes an increase in porosity and thus less friction between soil particles. As a consequence, rates of water erosion may decline with shrub encroachment, but frequency of creeping and sliding may increase.

Soil health in the Mediterranean region: Development and consolidation of a multifactor index to characterize the health of agricultural lands

NASA Astrophysics Data System (ADS)

Gil, Eshel; Guy, Levy; Oshri, Rinot; Michael, Borisover; Uri, Yermiyahu; Leah, Tsror; Hanan, Eizenberg; Tal, Svoray; Alex, Furman; Yael, Mishael; Yosef, Steinberger

2017-04-01

The link among between soil health, soil conservation, and food security, resilience, and function under a wide range of agricultural uses and different environmental systems, is at the heart of many ecofriendly research studies worldwide. We consider the health of soil as a function of its ability to provide ecosystem services, including agricultural production (provisional services); regulating natural cycles (regulation services) and as a habitat for plants (support services). Soil health is affected by a wide range of soil properties (biotic and abiotic) that maintain complex interactions among themselves. The decline in soil health includes degradation in its physical properties (e.g., deterioration of soil structure, compaction and sealing, water-repellency, soil erosion by water and wind), chemical properties (e.g., salinization, depletion of nutrients and organic matter content, accumulation of pollutants and reduction of the soils' ion exchange capacity) and biological properties (e.g., vulnerable populations of microflora, microfauna, and mesofauna, leading to a breach of ecological balance and biodiversity and, as a result, destruction of beneficial populations and pathogen outbreaks). Numerous studies show that agricultural practices have a major impact on soil functioning. Substituting longstanding tillage with no-till cropping and the amalgamation of cover crops in crop rotations were found to improve soil properties. Such changes contributed to the enhancement of the agronomical performance of the soil. On the other hand, these practices may result in lessened effectiveness of controlling perennial weeds. The evaluation of soil-health status in the Mediterranean region is very limited. Moreover, existing approaches for evaluation that have been used (such as the Cornell and Hany tests) do not give sufficient weight to important agronomic processes, such as soil erosion, salinization, sodification, spread of weeds in the fields (in particular, weeds that are difficult to control), soil-borne diseases, and pesticide fixation and release. We, a group of more than ten Israeli scientists, have recently started a multidisciplinary study aimed at developing and consolidating a multiparameter soil-health index to characterize the health of agricultural soils in Mediterranean regions. Such an index will enable us to quantitatively evaluate the contribution of different cultivation managements and reclamation activities. In order to achieve our goal, a three steps approach was adopted: 1) acquiring a multivariate component database (about 42 variables) that will be quantified in the laboratory and in the fields in two soil types of the most important agricultural region of Israel, at three different soil usage: orchard, field crops and "native" as a reference. The acquired biological, physical, and chemical variables comprise basic quantitative values in the soil health of agricultural land; (2) developing a multivariate soil-health index based on a multivariate correlation, in addition to conducting meetings with farmers and panel discussions with other scientists in the field. The whole study angled to evaluate the relative contribution of each of the biotic and abiotic parameters in order to develop a model related to soil health; and (3) to validate the efficiency of the developed index for characterizing and assessing soil-health state at the various agricultural regions in Israel where conservation and reclamation activities took place. We are open to extend our study to other areas with a Mediterranean climate and look forward to establishing cooperative activities with other research groups.

[Ecologo-hygienic criteria and monitoring indices of oil-contaminated peaty soils].

PubMed

Dubinina, O N; Khusnutdinova, N Yu; Mikhailova, L V; Yakhina, M R

2014-01-01

Intensive oil extraction in Khanty-Mansi Autonomous Okrug is not uncommon accompanied by emergency situations giving rise to the pollution of soil, surface and groundwater and causing an elevation in the population morbidity rate. The purpose of the study is to substantiate the basis for information value of hygienic indices of peat soils with low levels of oil contamination: from background values to exceeding the latters as much as 10-20 times, to apply in the study results in hygienic monitoring and oil regulation. The study was performed in accordance with the current methodological regulations. There was established the expediency of determination in transforming in the soil, composition of the petroleum hydrocarbons not only alkanes but arenes and resin-asphaltene fractions, indices of phytotoxicity, translocation of petroleum products into plants testing of soil extracts on protozoa and invertebrates.

Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus.

PubMed

Khudyakov, Jane I; D'haeseleer, Patrik; Borglin, Sharon E; Deangelis, Kristen M; Woo, Hannah; Lindquist, Erika A; Hazen, Terry C; Simmons, Blake A; Thelen, Michael P

2012-08-07

To process plant-based renewable biofuels, pretreatment of plant feedstock with ionic liquids has significant advantages over current methods for deconstruction of lignocellulosic feedstocks. However, ionic liquids are often toxic to the microorganisms used subsequently for biomass saccharification and fermentation. We previously isolated Enterobacter lignolyticus strain SCF1, a lignocellulolytic bacterium from tropical rain forest soil, and report here that it can grow in the presence of 0.5 M 1-ethyl-3-methylimidazolium chloride, a commonly used ionic liquid. We investigated molecular mechanisms of SCF1 ionic liquid tolerance using a combination of phenotypic growth assays, phospholipid fatty acid analysis, and RNA sequencing technologies. Potential modes of resistance to 1-ethyl-3-methylimidazolium chloride include an increase in cyclopropane fatty acids in the cell membrane, scavenging of compatible solutes, up-regulation of osmoprotectant transporters and drug efflux pumps, and down-regulation of membrane porins. These findings represent an important first step in understanding mechanisms of ionic liquid resistance in bacteria and provide a basis for engineering microbial tolerance.

Agrogeology today

NASA Astrophysics Data System (ADS)

Kerek, Barbara; Kuti, Laszlo; Vatai, Jozsef

2010-05-01

Agrogeology is one of the research sectors of applied geology. It addresses all geological characteristics of the superficial deposits and the related geological processes taking place therein which are of crucial importance regarding agricultural production and sylviculture, influence the plantation of crops and woods and provide information on a number of factors including the sequences constituting the soil, soil forming sediments and parent rocks, the position and quality of groundwater, the salt regime governed by groundwater movement as well as the natural and manmade changes in the regions below the soil horizon affecting the surface as well. Accordingly, it investigates not only the sediment appearing on the surface and affected by soil development (=soil) but all near-surface sequences taken together as well as the relationship between soil-parent material-groundwater in lowlands and soil-soil forming sediment and parent rock in mountain and hilly areas. Furthermore, it examines also the changes of these systems as a result of human intervention and makes predictions concerning the advantageous or disadvantageous effects of these changes. Consequently, the most important tasks of agrogeology can be defined as follows: 1. Detailed agrogeological description and specification of farmlands and land units aimed at optimal land use as well as supporting the rational selection of crops and the production system. 2. Investigation of the geological factors of different soil degradation processes (erosion, deflation, salinisation, acidification, desiccation, etc.), prediction of the occurrence of these processes together with the geological chances of their prevention and minimisation. 3. Examination of the agrogeological and water regime properties of the soil-(soil forming sediment)-parent rock-groundwater system characteristic for the given land unit. 4. Research, survey, simulation and prediction of the impacts of soil use as well as agri- and sylviculture on the soil-(soil forming sediment)-parent rock-groundwater or "soil-parent rock-bedrock" system aimed at the prevention and elimination of harmful effects. 5. Investigation of the geological aspects of water regulation and irrigation as well as their impact on the environment. 6. Definition, examination and characterisation of the real soil forming geological sequence. In Hungary the actual agrogeological investigations were launched by the agricultural reambulation of geological mapping data. During the early 1980s the so-called BFK-method was elaborated to the agrogeological investigation of these areas still used today. The main aspect of this method is that apart from the common geological sampling of the boreholes samples are also taken from the top- and subsoil (horizon 1), the soil forming sediment or parent material (horizon 2), the fluctuation zone of the groundwater (horizon 3) as well as from the zone permanently below the groundwater level (horizon 4) and the groundwater itself (Figure 2). These samples undergo detailed laboratory analyses. The comparative evaluation of the derived results allows making different agrogeological conclusions. During the period elapsed from the early 1980s the survey of the pilot areas allowed us investigating among others the agrogeological relationships of salinisation, acidification, excess water risk, erosion, and trace element regime as well as vine chlorosis.

Temporal and Spatial Variation of Soil Bacteria Richness, Composition, and Function in a Neotropical Rainforest

PubMed Central

Kivlin, Stephanie N; Hawkes, Christine V

2016-01-01

The high diversity of tree species has traditionally been considered an important controller of belowground processes in tropical rainforests. However, soil water availability and resources are also primary regulators of soil bacteria in many ecosystems. Separating the effects of these biotic and abiotic factors in the tropics is challenging because of their high spatial and temporal heterogeneity. To determine the drivers of tropical soil bacteria, we examined tree species effects using experimental tree monocultures and secondary forests at La Selva Biological Station in Costa Rica. A randomized block design captured spatial variation and we sampled at four dates across two years to assess temporal variation. We measured bacteria richness, phylogenetic diversity, community composition, biomass, and functional potential. All bacteria parameters varied significantly across dates. In addition, bacteria richness and phylogenetic diversity were affected by the interaction of vegetation type and date, whereas bacteria community composition was affected by the interaction of vegetation type and block. Shifts in bacteria community richness and composition were unrelated to shifts in enzyme function, suggesting physiological overlap among taxa. Based on the observed temporal and spatial heterogeneity, our understanding of tropical soil bacteria will benefit from additional work to determine the optimal temporal and spatial scales for sampling. Understanding spatial and temporal variation will facilitate prediction of how tropical soil microbes will respond to future environmental change. PMID:27391450

Temporal and Spatial Variation of Soil Bacteria Richness, Composition, and Function in a Neotropical Rainforest.

PubMed

Kivlin, Stephanie N; Hawkes, Christine V

2016-01-01

The high diversity of tree species has traditionally been considered an important controller of belowground processes in tropical rainforests. However, soil water availability and resources are also primary regulators of soil bacteria in many ecosystems. Separating the effects of these biotic and abiotic factors in the tropics is challenging because of their high spatial and temporal heterogeneity. To determine the drivers of tropical soil bacteria, we examined tree species effects using experimental tree monocultures and secondary forests at La Selva Biological Station in Costa Rica. A randomized block design captured spatial variation and we sampled at four dates across two years to assess temporal variation. We measured bacteria richness, phylogenetic diversity, community composition, biomass, and functional potential. All bacteria parameters varied significantly across dates. In addition, bacteria richness and phylogenetic diversity were affected by the interaction of vegetation type and date, whereas bacteria community composition was affected by the interaction of vegetation type and block. Shifts in bacteria community richness and composition were unrelated to shifts in enzyme function, suggesting physiological overlap among taxa. Based on the observed temporal and spatial heterogeneity, our understanding of tropical soil bacteria will benefit from additional work to determine the optimal temporal and spatial scales for sampling. Understanding spatial and temporal variation will facilitate prediction of how tropical soil microbes will respond to future environmental change.

Drivers of soil organic matter vulnerability to climate change. Part I: Laboratory incubations of Swiss forest soils and radiocarbon analysis

NASA Astrophysics Data System (ADS)

González Domínguez, Beatriz; Studer, Mirjam S.; Niklaus, Pascal A.; Haghipour, Negar; McIntyre, Cameron; Wacker, Lukas; Zimmermann, Stephan; Walthert, Lorenz; Hagedorn, Frank; Abiven, Samuel

2016-04-01

Given the key role of soil organic carbon (SOC) on climate and greenhouse gas regulation, there is an increasing need to incorporate the carbon (C) feedback between SOC and the atmosphere into earth system models. The evaluation of these models points towards uncertainties on the response of CO2-C fluxes, derived from the decomposition of SOC, to the influence of controls/drivers. SOC vulnerability refers to the likelihood of losing previously stabilized soil organic matter, by the effect of environmental factors. The objective of this study is to produce a SOC vulnerability ranking of soils and to provide new insights into the influence of environmental and soil properties controls. Research on SOC vulnerability tends to focus on climatic controls and neglect the effect of other factors, such as soil geochemistry and mineralogy, on C stabilization/de-stabilization processes. In this work, we hypothesized that climate (mean annual temperature and soil moisture status proxy at the research sites in the period 1981-2010), soil (pH and % clay) and terrain (slope gradient and orientation) characteristics are the main controls of the CO2-C fluxes from SOC. Following a statistics-based approach, we selected 54 forest sites across Switzerland, which cover a broad spectrum of values for the hypothesized controls. Then, we selected the study sites so that the controls are orthogonal to each other; thus, their effect was not confounded. At each site, we collected three non-overlapping topsoil (i.e. 20 cm) composites within 40 x 40 m2 plots. In the laboratory, we sieved fresh soils at 2 mm and run a 2-weeks pre-incubation, before beginning a 6-months aerobic soil incubation under controlled conditions of moisture and temperature. Periodically, we collected NaOH (1M) traps containing the CO2-C derived from microbial heterotrophic respiration. We calculated the cumulative CO2-C respired and the one-pool SOC decomposition rates from the 54 forest sites, and linked these data to the controls. The main result is that soil moisture and pH drive the CO2-C losses, and that temperature, % clay and terrain characteristics do not play a role. We will also present results on the relationship between the bulk soil radiocarbon signature of the 54 forest soils and their CO2-C losses, as a preliminary insight into SOC vulnerability and SOC stabilization processes.

[Effects of different fertilization treatments on soil humic acid structure characteristics].

PubMed

Zhao, Nan; Lü, Yi-Zhong

2012-07-01

The present article used soil humic acid as research object to study effects on the structure characteristics of soil humic acid under the condition of applying cake fertilizer, green manure, straw fertilizer with the same contents of nitrogen and phosphorus. It used element analysis, micro infrared, and solid 13C-NMR for structure analysis, the results indicated that: The chemical composition and structure characteristics of humic acids were similar, but they also had many obvious differences. (1) The atomic ratios of H/C, O/C, and C/N were all different for the humic acids, the soil humic acid of cake fertilizer processing had the highest contents of H and N, green manure processing of soil humic acid contained the highest content of O, while straw fertilizer processing of soil humic acid contained highest content of C. (2) Infrared analysis displayed that the three soil humic acids contained protein Cake fertilizer processing of soil humic acid contained the most amino compounds, green manure processing of soil humic acid contained the maximum contents of hydroxyl and aliphatic hydrocarbon, while straw fertilizer processing of soil humic acid contained the highest contents of alcohol and phenol. (3) Solid 13C-NMR data indicated that cake fertilizer processing of soil humic acid contained the most carboxyl carbon, green manure processing of soil humic acid contained the highest contents of alkyl carbon and carbonyl carbon, while straw fertilizer processing of soil humic acids had the most alkoxy carbon and aromatic carbon

Thermodynamic Cconstraints on Coupled Carbonate-Pyrite Weathering Dynamics and Carbon Fluxes

NASA Astrophysics Data System (ADS)

Winnick, M.; Maher, K.

2017-12-01

Chemical weathering within the critical zone regulates global biogeochemical cycles, atmospheric composition, and the supply of key nutrients to terrestrial and aquatic ecosystems. Recent studies suggest that thermodynamic limits on solute production act as a first-order control on global chemical weathering rates; however, few studies have addressed the factors that set these thermodynamic limits in natural systems. In this presentation, we investigate the effects of soil CO2 concentrations and pyrite oxidation rates on carbonate dissolution and associated carbon fluxes in the East River watershed in Colorado, using concentration-discharge relationships and thermodynamic constraints. Within the shallow subsurface, soil respiration rates and moisture content determine the extent of carbonic acid-promoted carbonate dissolution through their modulation of soil pCO2 and the balance of open- v. closed-system weathering processes. At greater depths, pyrite oxidation generates sulfuric acid, which alters the approach to equilibrium of infiltrating waters. Through comparisons of concentration-discharge data and reactive transport model simulations, we explore the conditions that determine whether sulfuric acid reacts to dissolve additional carbonate mineral or instead reacts with alkalinity already in solution - the balance of which determines watershed carbon flux budgets. Our study highlights the importance of interactions between the chemical structure of the critical zone and the hydrologic regulation of flowpaths in determining concentration-discharge relationships and overall carbon fluxes.

Plant water relations as affected by heavy metal stress: A review

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barcelo, J.; Poschenrieder, C.

1990-01-01

Metal toxicity causes multiple direct and indirect effects in plants which concern practically all physiological functions. In this review the effects of excess heavy metals and aluminum on those functions which will alter plant water relations are considered. After a brief comment on the metal effects in cell walls and plasma-lemma, and their consequences for cell expansion growth, the influences of high meal availability on the factors which regulate water entry and water exit in plants are considered. Emphasis is placed on the importance of distinguishing between low water availability in mine and serpentine soils and toxicity effects in plantsmore » which may impair the ability of a plant to regulate water uptake. Examples on water relations of both plants grown on metalliferous soil and hydroponics are presented, and the effects of metal toxicity on root growth, water transport and transpiration are considered. It is concluded that future research has to focus on the mechanisms of metal-induced inhibition of both root elongation and morphogenetic processes within roots. In order to understand the relation between metal tolerance and drought resistance better, further studies into metal tolerance mechanisms at the cell wall, membrane and vacuolar level, as well as into the mechanisms of drought resistance of plants adapted to metalliferous soils are required. 135 refs., 7 figs., 6 tabs.« less

Presence and Expression of Microbial Genes Regulating Soil Nitrogen Dynamics Along the Tanana River Successional Sequence

NASA Astrophysics Data System (ADS)

Boone, R. D.; Rogers, S. L.

2004-12-01

We report on work to assess the functional gene sequences for soil microbiota that control nitrogen cycle pathways along the successional sequence (willow, alder, poplar, white spruce, black spruce) on the Tanana River floodplain, Interior Alaska. Microbial DNA and mRNA were extracted from soils (0-10 cm depth) for amoA (ammonium monooxygenase), nifH (nitrogenase reductase), napA (nitrate reductase), and nirS and nirK (nitrite reductase) genes. Gene presence was determined by amplification of a conserved sequence of each gene employing sequence specific oligonucleotide primers and Polymerase Chain Reaction (PCR). Expression of the genes was measured via nested reverse transcriptase PCR amplification of the extracted mRNA. Amplified PCR products were visualized on agarose electrophoresis gels. All five successional stages show evidence for the presence and expression of microbial genes that regulate N fixation (free-living), nitrification, and nitrate reduction. We detected (1) nifH, napA, and nirK presence and amoA expression (mRNA production) for all five successional stages and (2) nirS and amoA presence and nifH, nirK, and napA expression for early successional stages (willow, alder, poplar). The results highlight that the existing body of previous process-level work has not sufficiently considered the microbial potential for a nitrate economy and free-living N fixation along the complete floodplain successional sequence.

pH Control of Untreated Water for Irrigation

NASA Astrophysics Data System (ADS)

Poyen, Faruk Bin; Kundu, Palash K.; Ghosh, Apurba K.

2018-05-01

Irrigation in India still plays a pivotal role in the country's economic and employment structure. But due to unawareness and lack of technological upgradations and ill and careless agricultural practices, the yield from the fields is poor and not to its best capacity. There exists a lot of reasons and factors that brings down the crop productivity. One among them is the quality of irrigation water that is supplied to the fields. It is a common practice in India and other sub-continental countries not to access the water qualitatively before getting fed to the fields. Albeit, it does not have catastrophic effects on the productivity, but it affects the nourishment of the crops to some good extent. Water pH has a strong effect on the soil and crop, when it comes to absorption of nutrients by the plant bodies. With properly regulating the pH level of the irrigation water, it is possible to create an ambiance where the symbiotic effects between the soil and the plant can be optimized. In this paper, it is tried to regulate the pH levels of the water based on the type of soil and the optimal requirement by the crop. The work in this paper involves neutralization of acidic or alkaline water before it is being supplied to the farmlands. The process model is simulation based which gave considerably good and acceptable results.

Fuel reduction practices and their effects on soil quality

Treesearch

Matt D. Busse; Ken R. Hubbert; Emily E. Y. Moghaddas

2014-01-01

Soils sustain our terrestrial ecosystems, help fuel plant growth, and govern key ecosystem services such as the storage and provision of clean water, degradation of toxic compounds, and regulation of atmospheric gases. Preserving the integrity of soil thus is an earnest responsibility of land stewardship in the United States. This report provides a synthesis of soil...

Increased Activity of Rhizosphere and Hyphosphere Enzymes under Elevated CO2 in a Loblolly Pine Stand

NASA Astrophysics Data System (ADS)

Meier, I.; Phillips, R.

2012-12-01

The stimulatory effect of elevated atmospheric CO2 under global climate change on forest productivity has been predicted to decrease over time as pools of available N in soil become depleted, but empirical support for such progressive N limitation has been lacking. Increased N acquisition from soil depleted in inorganic nitrogen requires stimulation of the microbial processing of organic N, possibly through increasing C supply to soil by plant roots or mycorrhizal hyphae. Increases in (mycorr)rhizosphere C fluxes could stimulate microbes to produce extra-cellular enzymes that release N from SOM, feeding back from soil microsites to ecosystem-scale processes. We investigated the influence of elevated CO2 on root exudation and soil enzyme activity at the Duke Forest FACE site, USA, where loblolly pine (Pinus taeda L.) stands have been exposed to elevated CO2 for 14 years and N fertilization for five years. In each plot, root boxes containing acetate windows were installed in 2008. Two years after installation, we collected soils adjacent to root tips (the rhizosphere), hyphal tips (the hyphosphere) and bulk soil. We measured in situ root exudation rates from intact pine roots. Study objectives were to analyze (i) the influence of atmospheric CO2 on root exudation and extra-cellular enzyme activities, (ii) the influence of soil N availability in regulating these activities, and (iii) the relationship between the activities of enzymes involved in N cycling in soils and gross N transformations at soil microsites. Elevated atmospheric CO2 significantly increased the activity of β-1-4-N-acetylglucosaminidase (NAG) in the rhizosphere by almost 2.5 times (39 to 95 nmol h-1 g-1), and 1.6fold in the hyphosphere relative to ambient plots. NAG is an enzyme involved in the degradation of chitin from the cell walls of soil organisms, releasing absorbable forms of nitrogen. The activity of peroxidase, which degrades aromatic C compounds of SOM, increased significantly in the hyphosphere of stands exposed to elevated CO2. Nitrogen fertilization diminished this effect of elevated CO2 on enzyme activities at microsites. Our results show that the metabolism of microbial communities is shifted to the decomposition of organic N under elevated atmospheric CO2, presumably stimulated by N limitation and increased root C exudation.

Isotopes and soil physic analysis as a tool to meet answers related to soil-plant-atmosphere behavior of Amazon forest during droughts

NASA Astrophysics Data System (ADS)

Borma, L. D. S.; Oliveira, R. S.; Silva, R. D.; Chaparro Saaveedra, O. F.; Barros, F. V.; Bittencourt, P.

2015-12-01

Droughts and floods are part of the Amazon weather pattern, but in face of climate change, it has been expected an increase in their intensity and duration. Forests are important regulators of climate. However, it is still unknown how they respond to an increase in frequency and intensity of extreme droughts. Additionally, there are great uncertainties related with the forest behavior in an enriched CO2 environment. For the Amazon rainforest, some authors report forest growth in a drier climate, while others report forest mortality in these same conditions. The crucial factor in this process seem the linkage between atmospheric demand from water and its provision by soil moisture, intermediated by the plants. In theory, in regions where soil moisture is high, even in the absence of rainfall conditions, water exists in enough quantity to meet the atmospheric demand, and majority of plants behave as an evergreen forest. This is the case, for example, for some research sites of equatorial regions of the Amazon forest, which tend to increase evapotranspiration rates in dry season, when the atmospheric demand is higher. However, the extent to which soil moisture decreases, the plant is no longer able to meet the atmospheric demand, limiting evapotranspiration and possibly, entering in a dormant state. To understand the forest response to droughts, in terms of its potential to maintain or reduce evapotranspiration rates, it is necessary to know water dynamics in soil and soil layers where plants are able to extract water. It's a challenge, considering the great variability of soils and plants that forms the huge biodiversity of the Amazon forest. Here, we present an experiment design based on isotopic analyzes in a small watershed in Amazon basin. In order to understand the dynamics of the water used by the plant during the evaporation process, isotope analysis were carried out in soil water collected from shallow and deep groundwater, in the water collected on the bark of plants and rainfall water, intercepted or not by the canopy. These results were analyzed in conjunction with the soil properties, its moisture retention capacity and groundwater level variations. This study presents some insights about the capability of this methodology to answer questions related to the soil moisture sources and forest response to droughts.

A global spectral library to characterize the world's soil

USDA-ARS?s Scientific Manuscript database

Soil provides ecosystem services, supports human health and habitation, stores carbon and regulates emissions of greenhouse gases. Unprecedented pressures on soil from degradation and urbanization are threatening agro-ecological balances and food security. It is important that we learn more about so...

Silicon Regulates Potential Genes Involved in Major Physiological Processes in Plants to Combat Stress

PubMed Central

Manivannan, Abinaya; Ahn, Yul-Kuyn

2017-01-01

Silicon (Si), the quasi-essential element occurs as the second most abundant element in the earth's crust. Biological importance of Si in plant kingdom has become inevitable particularly under stressed environment. In general, plants are classified as high, medium, and low silicon accumulators based on the ability of roots to absorb Si. The uptake of Si directly influence the positive effects attributed to the plant but Si supplementation proves to mitigate stress and recover plant growth even in low accumulating plants like tomato. The application of Si in soil as well as soil-less cultivation systems have resulted in the enhancement of quantitative and qualitative traits of plants even under stressed environment. Silicon possesses several mechanisms to regulate the physiological, biochemical, and antioxidant metabolism in plants to combat abiotic and biotic stresses. Nevertheless, very few reports are available on the aspect of Si-mediated molecular regulation of genes with potential role in stress tolerance. The recent advancements in the era of genomics and transcriptomics have opened an avenue for the determination of molecular rationale associated with the Si amendment to the stress alleviation in plants. Therefore, the present endeavor has attempted to describe the recent discoveries related to the regulation of vital genes involved in photosynthesis, transcription regulation, defense, water transport, polyamine synthesis, and housekeeping genes during abiotic and biotic stress alleviation by Si. Furthermore, an overview of Si-mediated modulation of multiple genes involved in stress response pathways such as phenylpropanoid pathway, jasmonic acid pathway, ABA-dependent or independent regulatory pathway have been discussed in this review. PMID:28824681

Divergence of dominant factors in soil microbial communities and functions in forest ecosystems along a climatic gradient

NASA Astrophysics Data System (ADS)

Xu, Zhiwei; Yu, Guirui; Zhang, Xinyu; He, Nianpeng; Wang, Qiufeng; Wang, Shengzhong; Xu, Xiaofeng; Wang, Ruili; Zhao, Ning

2018-03-01

Soil microorganisms play an important role in regulating nutrient cycling in terrestrial ecosystems. Most of the studies conducted thus far have been confined to a single forest biome or have focused on one or two controlling factors, and few have dealt with the integrated effects of climate, vegetation, and soil substrate availability on soil microbial communities and functions among different forests. In this study, we used phospholipid-derived fatty acid (PLFA) analysis to investigate soil microbial community structure and extracellular enzymatic activities to evaluate the functional potential of soil microbes of different types of forests in three different climatic zones along the north-south transect in eastern China (NSTEC). Both climate and forest type had significant effects on soil enzyme activities and microbial communities with considerable interactive effects. Except for soil acid phosphatase (AP), the other three enzyme activities were much higher in the warm temperate zone than in the temperate and the subtropical climate zones. The soil total PLFAs and bacteria were much higher in the temperate zone than in the warm temperate and the subtropical zones. The soil β-glucosidase (BG) and N-acetylglucosaminidase (NAG) activities were highest in the coniferous forest. Except for the soil fungi and fungi-bacteria (F/B), the different groups of microbial PLFAs were much higher in the conifer broad-leaved mixed forests than in the coniferous forests and the broad-leaved forests. In general, soil enzyme activities and microbial PLFAs were higher in primary forests than in secondary forests in temperate and warm temperate regions. In the subtropical region, soil enzyme activities were lower in the primary forests than in the secondary forests and microbial PLFAs did not differ significantly between primary and secondary forests. Different compositions of the tree species may cause variations in soil microbial communities and enzyme activities. Our results showed that the main controls on soil microbes and functions vary in different climatic zones and that the effects of soil moisture content, soil temperature, clay content, and the soil N / P ratio were considerable. This information will add value to the modeling of microbial processes and will contribute to carbon cycling in large-scale carbon models.

Soil Organic Carbon Loss: An Overlooked Factor in the Carbon Sequestration Potential of Enhanced Mineral Weathering

NASA Astrophysics Data System (ADS)

Dietzen, Christiana; Harrison, Robert

2016-04-01

Weathering of silicate minerals regulates the global carbon cycle on geologic timescales. Several authors have proposed that applying finely ground silicate minerals to soils, where organic acids would enhance the rate of weathering, could increase carbon uptake and mitigate anthropogenic CO2 emissions. Silicate minerals such as olivine could replace lime, which is commonly used to remediate soil acidification, thereby sequestering CO2 while achieving the same increase in soil pH. However, the effect of adding this material on soil organic matter, the largest terrestrial pool of carbon, has yet to be considered. Microbial biomass and respiration have been observed to increase with decreasing acidity, but it is unclear how long the effect lasts. If the addition of silicate minerals promotes the loss of soil organic carbon through decomposition, it could significantly reduce the efficiency of this process or even create a net carbon source. However, it is possible that this initial flush of microbial activity may be compensated for by additional organic matter inputs to soil pools due to increases in plant productivity under less acidic conditions. This study aimed to examine the effects of olivine amendments on soil CO2 flux. A liming treatment representative of typical agricultural practices was also included for comparison. Samples from two highly acidic soils were split into groups amended with olivine or lime and a control group. These samples were incubated at 22°C and constant soil moisture in jars with airtight septa lids. Gas samples were extracted periodically over the course of 2 months and change in headspace CO2 concentration was determined. The effects of enhanced mineral weathering on soil organic matter have yet to be addressed by those promoting this method of carbon sequestration. This project provides the first data on the potential effects of enhanced mineral weathering in the soil environment on soil organic carbon pools.

Organic Acids Regulation of Chemical-Microbial Phosphorus Transformations in Soils.

PubMed

Menezes-Blackburn, Daniel; Paredes, Cecilia; Zhang, Hao; Giles, Courtney D; Darch, Tegan; Stutter, Marc; George, Timothy S; Shand, Charles; Lumsdon, David; Cooper, Patricia; Wendler, Renate; Brown, Lawrie; Blackwell, Martin; Wearing, Catherine; Haygarth, Philip M

2016-11-01

We have used an integrated approach to study the mobility of inorganic phosphorus (P) from soil solid phase as well as the microbial biomass P and respiration at increasing doses of citric and oxalic acid in two different soils with contrasting agronomic P status. Citric or oxalic acids significantly increased soil solution P concentrations for doses over 2 mmol kg -1 . However, low organic acid doses (<2 mmol kg -1 ) were associated with a steep increase in microbial biomass P, which was not seen for higher doses. In both soils, treatment with the tribasic citric acid led to a greater increase in soil solution P than the dibasic oxalic acid, likely due to the rapid degrading of oxalic acids in soils. After equilibration of soils with citric or oxalic acids, the adsorbed-to-solution distribution coefficient (K d ) and desorption rate constants (k -1 ) decreased whereas an increase in the response time of solution P equilibration (T c ) was observed. The extent of this effect was shown to be both soil and organic acid specific. Our results illustrate the critical thresholds of organic acid concentration necessary to mobilize sorbed and precipitated P, bringing new insight on how the exudation of organic acids regulate chemical-microbial soil phosphorus transformations.

Ecosystem functions including soil organic carbon, total nitrogen and available potassium are crucial for vegetation recovery.

PubMed

Qiu, Kaiyang; Xie, Yingzhong; Xu, Dongmei; Pott, Richard

2018-05-15

The effects of biodiversity on ecosystem functions have been extensively studied, but little is known about the effects of ecosystem functions on biodiversity. This knowledge is important for understanding biodiversity-ecosystem functioning relationships. Desertification reversal is a significant global challenge, but the factors that play key roles in this process remain unclear. Here, using data sampled from areas undergoing desertification reversal, we identify the dominant soil factors that play a role in vegetation recovery with ordinary least squares and structural equation modelling. We found that ecosystem functions related to the cycling of soil carbon (organic C, SOC), nitrogen (total N, TN), and potassium (available K, AK) had the most substantial effects on vegetation recovery. The effects of these ecosystem functions were simultaneously influenced by the soil clay, silt and coarse sand fractions and the soil water content. Our findings suggest that K plays a critical role in ecosystem functioning and is a limiting factor in desertification reversal. Our results provide a scientific basis for desertification reversal. Specifically, we found that plant biodiversity may be regulated by N, phosphorus (P) and K cycling. Collectively, biodiversity may respond to ecosystem functions, the conservation and enhancement of which can promote the recovery of vegetation.

A new hammer to crack an old nut: interspecific competitive resource capture by plants is regulated by nutrient supply, not climate.

PubMed

Trinder, Clare J; Brooker, Rob W; Davidson, Hazel; Robinson, David

2012-01-01

Although rarely acknowledged, our understanding of how competition is modulated by environmental drivers is severely hampered by our dependence on indirect measurements of outcomes, rather than the process of competition. To overcome this, we made direct measurements of plant competition for soil nitrogen (N). Using isotope pool-dilution, we examined the interactive effects of soil resource limitation and climatic severity between two common grassland species. Pool-dilution estimates the uptake of total N over a defined time period, rather than simply the uptake of ¹⁵N label, as used in most other tracer experiments. Competitive uptake of N was determined by its available form (NO₃⁻ or NH₄⁺). Soil N availability had a greater effect than the climatic conditions (location) under which plants grew. The results did not entirely support either of the main current theories relating the role of competition to environmental conditions. We found no evidence for Tilman's theory that competition for soil nutrients is stronger at low, compared with high nutrient levels and partial support for Grime's theory that competition for soil nutrients is greater under potentially more productive conditions. These results provide novel insights by demonstrating the dynamic nature of plant resource competition.

A New Hammer to Crack an Old Nut: Interspecific Competitive Resource Capture by Plants Is Regulated by Nutrient Supply, Not Climate

PubMed Central

Trinder, Clare J.; Brooker, Rob W.; Davidson, Hazel; Robinson, David

2012-01-01

Although rarely acknowledged, our understanding of how competition is modulated by environmental drivers is severely hampered by our dependence on indirect measurements of outcomes, rather than the process of competition. To overcome this, we made direct measurements of plant competition for soil nitrogen (N). Using isotope pool-dilution, we examined the interactive effects of soil resource limitation and climatic severity between two common grassland species. Pool-dilution estimates the uptake of total N over a defined time period, rather than simply the uptake of 15N label, as used in most other tracer experiments. Competitive uptake of N was determined by its available form (NO3 − or NH4 +). Soil N availability had a greater effect than the climatic conditions (location) under which plants grew. The results did not entirely support either of the main current theories relating the role of competition to environmental conditions. We found no evidence for Tilman's theory that competition for soil nutrients is stronger at low, compared with high nutrient levels and partial support for Grime's theory that competition for soil nutrients is greater under potentially more productive conditions. These results provide novel insights by demonstrating the dynamic nature of plant resource competition. PMID:22247775

Chemodynamics of Methyl Parathion and Ethyl Parathion: Adsorption Models for Sustainable Agriculture

PubMed Central

Rafique, Uzaira; Balkhair, Khaled S.; Ashraf, Muhammad Aqeel

2014-01-01

The toxicity of organophosphate insecticides for nontarget organism has been the subject of extensive research for sustainable agriculture. Pakistan has banned the use of methyl/ethyl parathions, but they are still illegally used. The present study is an attempt to estimate the residual concentration and to suggest remedial solution of adsorption by different types of soils collected and characterized for physicochemical parameters. Sorption of pesticides in soil or other porous media is an important process regulating pesticide transport and degradation. The percentage removal of methyl parathion and ethyl parathion was determined through UV-Visible spectrophotometer at 276 nm and 277 nm, respectively. The results indicate that agricultural soil as compared to barren soil is more efficient adsorbent for both insecticides, at optimum batch condition of pH 7. The equilibrium between adsorbate and adsorbent was attained in 12 hours. Methyl parathion is removed more efficiently (by seven orders of magnitude) than ethyl parathion. It may be attributed to more available binding sites and less steric hindrance of methyl parathion. Adsorption kinetics indicates that a good correlation exists between distribution coefficient (Kd) and soil organic carbon. A general increase in Kd is noted with increase in induced concentration due to the formation of bound or aged residue. PMID:24689059

Ecological and evolutionary consequences of niche construction for its agent.

PubMed

Kylafis, Grigoris; Loreau, Michel

2008-10-01

Niche construction can generate ecological and evolutionary feedbacks that have been underinvestigated so far. We present an eco-evolutionary model that incorporates the process of niche construction to reveal its effects on the ecology and evolution of the niche-constructing agent. We consider a simple plant-soil nutrient ecosystem in which plants have the ability to increase the input of inorganic nutrient as an example of positive niche construction. On an ecological time scale, the model shows that niche construction allows the persistence of plants under infertile soil conditions that would otherwise lead to their extinction. This expansion of plants' niche, however, requires a high enough rate of niche construction and a high enough initial plant biomass to fuel the positive ecological feedback between plants and their soil environment. On an evolutionary time scale, we consider that the rates of niche construction and nutrient uptake coevolve in plants while a trade-off constrains their values. Different evolutionary outcomes are possible depending on the shape of the trade-off. We show that niche construction results in an evolutionary feedback between plants and their soil environment such that plants partially regulate soil nutrient content. The direct benefit accruing to plants, however, plays a crucial role in the evolutionary advantage of niche construction.

Soil fauna, soil properties and geo-ecosystem functioning

NASA Astrophysics Data System (ADS)

Cammeraat, L. H.

2012-04-01

The impact of soil fauna on soil processes is of utmost importance, as the activity of soil fauna directly affects soil quality. This is expressed by the direct effects of soil fauna on soil physical and soil chemical properties that not only have great importance to food production and ecosystems services, but also on weathering and hydrological and geomorphological processes. Soil animals can be perceived as ecosystem engineers that directly affect the flow of water, sediments and nutrients through terrestrial ecosystems. The biodiversity of animals living in the soil is huge and shows a huge range in size, functions and effects. Most work has been focused on only a few species such as earthworms and termites, but in general the knowledge on the effect of soil biota on soil ecosystem functioning is limited as it is for their impact on processes in the soil and on the soil surface. In this presentation we would like to review some of the impacts of soil fauna on soil properties that have implications for geo-ecosystem functioning and soil formation processes.

Regulation of nitrogen mineralization and nitrification in Southern Appalachian ecosystems: separating the relative importance of biotic vs. abiotic controls

Treesearch

Jennifer d. Knoepp; James M. Vose

2007-01-01

Long-term measurements of soil nitrogen (N) transformations along an environmental gradient within the Coweeta Hydrologic Laboratory basin in western North Carolina showed a strong seasonal pattern and suggested that vegetation community type through its influence on soil properties-was an important regulating factor. Our objective was to determine the relative effects...

Thermal adaptation of decomposer communities in warming soils

PubMed Central

Bradford, Mark A.

2013-01-01

Temperature regulates the rate of biogeochemical cycles. One way it does so is through control of microbial metabolism. Warming effects on metabolism change with time as physiology adjusts to the new temperature. I here propose that such thermal adaptation is observed in soil microbial respiration and growth, as the result of universal evolutionary trade-offs between the structure and function of both enzymes and membranes. I review the basis for these trade-offs and show that they, like substrate depletion, are plausible mechanisms explaining soil respiration responses to warming. I argue that controversies over whether soil microbes adapt to warming stem from disregarding the evolutionary physiology of cellular metabolism, and confusion arising from the term thermal acclimation to represent phenomena at the organism- and ecosystem-levels with different underlying mechanisms. Measurable physiological adjustments of the soil microbial biomass reflect shifts from colder- to warmer-adapted taxa. Hypothesized declines in the growth efficiency of soil microbial biomass under warming are controversial given limited data and a weak theoretical basis. I suggest that energy spilling (aka waste metabolism) is a more plausible mechanism for efficiency declines than the commonly invoked increase in maintenance-energy demands. Energy spilling has many fitness benefits for microbes and its response to climate warming is uncertain. Modeled responses of soil carbon to warming are sensitive to microbial growth efficiency, but declines in efficiency mitigate warming-induced carbon losses in microbial models and exacerbate them in conventional models. Both modeling structures assume that microbes regulate soil carbon turnover, highlighting the need for a third structure where microbes are not regulators. I conclude that microbial physiology must be considered if we are to have confidence in projected feedbacks between soil carbon stocks, atmospheric CO2, and climate change. PMID:24339821

Seasonal Dynamics of Trace Elements in Tidal Salt Marsh Soils as Affected by the Flow-Sediment Regulation Regime

PubMed Central

Bai, Junhong; Xiao, Rong; Zhao, Qingqing; Lu, Qiongqiong; Wang, Junjing; Reddy, K. Ramesh

2014-01-01

Soil profiles were collected in three salt marshes with different plant species (i.e. Phragmites australis, Tamarix chinensis and Suaeda salsa) in the Yellow River Delta (YRD) of China during three seasons (summer and fall of 2007 and the following spring of 2008) after the flow-sediment regulation regime. Total elemental contents of As, Cd, Cu, Pb and Zn were determined using inductively coupled plasma atomic absorption spectrometry to investigate temporal variations in trace elements in soil profiles of the three salt marshes, assess the enrichment levels and ecological risks of these trace elements in three sampling seasons and identify their influencing factors. Trace elements did not change significantly along soil profiles at each site in each sampling season. The highest value for each sampling site was observed in summer and the lowest one in fall. Soils in both P. australis and S. salsa wetlands tended to have higher trace element levels than those in T. chinensis wetland. Compared to other elements, both Cd and As had higher enrichment factors exceeding moderate enrichment levels. However, the toxic unit (TU) values of these trace elements did not exceed probable effect levels. Correlation analysis showed that these trace elements were closely linked to soil properties such as moisture, sulfur, salinity, soil organic matter, soil texture and pH values. Principal component analysis showed that the sampling season affected by the flow-sediment regulation regime was the dominant factor influencing the distribution patterns of these trace elements in soils, and plant community type was another important factor. The findings of this study could contribute to wetland conservation and management in coastal regions affected by the hydrological engineering. PMID:25216278

Gaining Regulator Acceptance of Natural Attenuation as a Remediation Tool

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hughes, M.B.

Monitored natural attenuation (MNA) makes use of biological degradation, chemical reactions with natural materials, and other processes to clean up contaminated soils and groundwater. In the past, the regulatory community has been slow to accept natural attenuation due to a misperception that natural attenuation is a ''do nothing'' approach. Recently however, regulators have been more open to considering MNA as part of an overall clean-up plan that includes active treatment technologies to remove or contain the source of contamination at a site. MNA is currently being implemented at the Savannah River Site for remediation of selected contaminants. The South Carolinamore » Department of Health and Environmental Control, who has regulatory authority over these actions, has accepted this process. Significant overall cost savings are forecast. Additionally, there will be less disruption to the ecosystem, compared with engineered technologies. This paper describes the monitored natural attenuation concept as well as the process of constructive engagement with the regulators to achieve acceptance. Application to DOE, DOD, and commercial sites, as well as acceptability to other regulatory bodies, will be discussed with an emphasis on strategies to prevent false starts in the negotiation process and inventing options that result in mutual gains for all parties.« less

Chromium fractionation and plant availability in tannery-sludge amended soil

NASA Astrophysics Data System (ADS)

Allué, Josep; Moya Garcés, Alba; Bech, Jaume; Barceló, Juan; Poschenrieder, Charlotte

2013-04-01

The leather industry represents an important economic sector in both developed and developing countries. Chromium tanning is the major process used to obtain high quality leather. Within the REACH regulation the use of Cr, especially CrVI, in the tanning process is under discussion in Europe. High Cr concentration in shoes and other Cr-tanned leather products can cause contact dermatitis in sensitive population. Moreover, the high Cr concentration is the major limiting factor for the use of tannery sludge as a source of organic matter in agricultural soils. Interest in Cr, however is not limited to its potential toxic effects. Chromium III is used as a dietary supplement because there are reports, but also controversy, about the positive effects of Cr III in glucose tolerance and type-2 diabetes. Adequate intake levels for Cr by the diet have been established between 25 and 35 µg/day for adult females and males, respectively. Sufficient supply of Cr III by the diet is preferable to the use of CrIII-salt based dietary supplements. The objective of the present work was to investigate whether Cr from tannery sludge-amended soil is available to Trigonella foenum-graecum plants, a plant used both as a spice and as a medicinal herb, because of its hypoglucemic effects. For this purpose clay loam soil (pH 7.8) was sieved (2mm) and thoroughly mixed with tannery sludge from a depuration station (Igualadina Depuració i Recuperació S.L., Igualada, Barcelona, Spain). The sludge had a Cr concentration of 6,034mg kg-1 and a 0.73 % of NH4-nitrogen. All the Cr was in the form of CrIII. Three treatments were disposed. Control soil receiving no sludge, a 60 mg kg-1 Cr treatment (10 g fresh sludge kg-1 soil) and a 120 mg kg-1 Cr treatment (20 g fresh sludge kg-1 soil). Control soil and the soil treated with 10g kg-1 sludge received NPK fertilizer in the form of ammonium sulfate, superfosfate, and KCl to rise the N,P, and K concentrations to similar levels to those achieved in the soils with the highest sludge dose (20 g kg-1). Soils from the different treatments were potted (5 L) and planted with Trigonella foenum graecum seeds (1 plant per pot). Plants were harvested in the vegetative stage and processed for tissue analysis of Cr, Fe, Zn and Pb. A sequential extraction procedure was applied to the soil for getting insight into the operationally defined soil fractions that incorporate the tannery sludge derived Cr. In any of the treatments Cr was detectable in the exchangeable and easily reducible fractions. In control soils around 10% of soil Cr was in the moderately reducible fraction and the rest in the residual fraction. Contrastingly tannery sludge amended soils incorporated most Cr in the moderately reducible fraction extracted by acid oxalate. This distribution in relation to plant Cr concentrations will be discussed. Acknowledgement: Supported by the Spanish Government (project BFU2010-14873)

7 CFR 301.85-1 - Definitions.

Code of Federal Regulations, 2014 CFR

2014-01-01

... destination of regulated articles for scientific purposes. Soil. That part of the upper layer of earth in... equipment used for soil tillage, including tillage attachments for farm tractors, e.g., tractors, disks...., combines, potato conveyors, and harvesters and hay balers. Mechanized soil-moving equipment. Equipment used...

7 CFR 301.85-1 - Definitions.

Code of Federal Regulations, 2013 CFR

2013-01-01

... destination of regulated articles for scientific purposes. Soil. That part of the upper layer of earth in... equipment used for soil tillage, including tillage attachments for farm tractors, e.g., tractors, disks...., combines, potato conveyors, and harvesters and hay balers. Mechanized soil-moving equipment. Equipment used...

7 CFR 301.85-1 - Definitions.

Code of Federal Regulations, 2011 CFR

2011-01-01

... destination of regulated articles for scientific purposes. Soil. That part of the upper layer of earth in... equipment used for soil tillage, including tillage attachments for farm tractors, e.g., tractors, disks...., combines, potato conveyors, and harvesters and hay balers. Mechanized soil-moving equipment. Equipment used...

7 CFR 301.85-1 - Definitions.

Code of Federal Regulations, 2010 CFR

2010-01-01

... destination of regulated articles for scientific purposes. Soil. That part of the upper layer of earth in... equipment used for soil tillage, including tillage attachments for farm tractors, e.g., tractors, disks...., combines, potato conveyors, and harvesters and hay balers. Mechanized soil-moving equipment. Equipment used...

7 CFR 301.85-1 - Definitions.

Code of Federal Regulations, 2012 CFR

2012-01-01

... destination of regulated articles for scientific purposes. Soil. That part of the upper layer of earth in... equipment used for soil tillage, including tillage attachments for farm tractors, e.g., tractors, disks...., combines, potato conveyors, and harvesters and hay balers. Mechanized soil-moving equipment. Equipment used...

Combined effects of short-term rainfall patterns and soil texture on nitrogen cycling -- A Modeling Analysis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gu, C.; Riley, W.J.

2009-11-01

Precipitation variability and magnitude are expected to change in many parts of the world over the 21st century. We examined the potential effects of intra-annual rainfall patterns on soil nitrogen (N) transport and transformation in the unsaturated soil zone using a deterministic dynamic modeling approach. The model (TOUGHREACT-N), which has been tested and applied in several experimental and observational systems, mechanistically accounts for microbial activity, soil-moisture dynamics that respond to precipitation variability, and gaseous and aqueous tracer transport in the soil. Here, we further tested and calibrated the model against data from a precipitation variability experiment in a tropical systemmore » in Costa Rica. The model was then used to simulate responses of soil moisture, microbial dynamics, nitrogen (N) aqueous and gaseous species, N leaching, and N trace-gas emissions to changes in rainfall patterns; the effect of soil texture was also examined. The temporal variability of nitrate leaching and NO, N{sub 2}, and N{sub 2}O effluxes were significantly influenced by rainfall dynamics. Soil texture combined with rainfall dynamics altered soil moisture dynamics, and consequently regulated soil N responses to precipitation changes. The clay loam soil more effectively buffered water stress during relatively long intervals between precipitation events, particularly after a large rainfall event. Subsequent soil N aqueous and gaseous losses showed either increases or decreases in response to increasing precipitation variability due to complex soil moisture dynamics. For a high rainfall scenario, high precipitation variability resulted in as high as 2.4-, 2.4-, 1.2-, and 13-fold increases in NH{sub 3}, NO, N{sub 2}O and NO{sub 3}{sup -} fluxes, respectively, in clay loam soil. In sandy loam soil, however, NO and N{sub 2}O fluxes decreased by 15% and 28%, respectively, in response to high precipitation variability. Our results demonstrate that soil N cycling responses to increasing precipitation variability depends on precipitation amount and soil texture, and that accurate prediction of future N cycling and gas effluxes requires models with relatively sophisticated representation of the relevant processes.« less

The long oasis: understanding and managing saline floodplains in southeastern Australia

NASA Astrophysics Data System (ADS)

Woods, J.; Green, G.; Laattoe, T.; Purczel, C.; Riches, V.; Li, C.; Denny, M.

2017-12-01

In a semi-arid region of southeastern Australia, the River Murray is the predominant source of freshwater for town water supply, irrigation, and floodplain ecosystems. The river interacts with aquifers where the salinity routinely exceeds 18,000 mg/l. River regulation, extraction, land clearance, and irrigation have reduced the size and frequency of floods while moving more salt into the floodplain. Floodplain ecosystem health has declined. Management options to improve floodplain health under these modified conditions include environmental watering, weirpool manipulation, and groundwater pumping. To benefit long-lived tree species, floodplain management needs to increase soil moisture availability. A conceptual model was developed of floodplain processes impacting soil moisture availability. The implications and limitations of the conceptualization were investigated using a series of numerical models, each of which simulated a subset of the processes under current and managed conditions. The aim was to determine what range of behaviors the models predicted, and to identify which parameters were key to accurately predicting the success of management options. Soil moisture availability was found to depend strongly on the properties of the floodplain clay, which controls vertical recharge during inundation. Groundwater freshening near surface water features depended on the riverbed conductivity and the penetration of the river into the floodplain sediments. Evapotranspiration is another critical process, and simulations revealed the limitations of standard numerical codes in environments where both evaporation and transpiration depend on salinity. Finally, maintenance of viable populations of floodplain trees is conceptually understood to rely on the persistence of adequate soil moisture availability over time, but thresholds for duration of exposure to low moisture availability that lead to decline and irreversible decline in tree condition are a major knowledge gap. The work identified critical data gaps which will be addressed in monitoring guidelines to improve management. This includes: hydrogeochemical sampling; in situ soil monitoring combined with tree health observations; monitoring of actual evapotranspiration; and monitoring of bores close to surface water sources.

Chemical mechanisms of photocatalytic de-soiling and de-polluting processes in indoor environments and urban surfaces

NASA Astrophysics Data System (ADS)

Sleiman, M.; Rosseler, O.; Montesinos, N.; Litter, M.; Bikiel, D.; Kirchstetter, T.; Bluhm, H.; Ahmed, M.; Salmeron, M.; Destaillats, H.

2013-12-01

Photocatalysis has been postulated as a promising approach for the de-pollution of indoor air and urban atmospheres, and for self-cleaning surfaces. Building materials and coatings containing nano-sized TiO2 photocatalytic functionalities are gaining market share, including self-cleaning building envelope materials (coatings, mortar, plaster, architectural fabrics and tiles) and indoor air purifiers. While many studies have reported good performance of photocatalysis in the removal of organic pollutants from indoor air, more information is needed to understand secondary emissions of potentially harmful byproducts from photocatalytic air cleaners. This presentation will describe analytical methods and experimental results from room-sized chamber experiments using a realistic challenge VOC mixture at low ppb levels. We will also present results from separate studies that used synchrotron-based surface spectroscopic and mass spectrometric methods to better understand the photocatalytic mechanisms that regulate the de-soiling and de-polluting activity. Two photocatalytic processes were studied: de-noxification (NOx removal) and de-soiling (removal of deposited black carbon or soot). Ambient pressure XPS was used to study surface and gas-phase species formed during adsorption of NO2 on TiO2 and subsequent UV irradiation at λ = 365 nm. The results illustrate how NOx chemistry on TiO2 surfaces can be affected by the presence of water vapor, heteroatoms present as impurities, and carbonaceous soiling. The reactivity of NOx and NO3- on surfaces leads to reduced adsorbed and gas-phase nitrogenated species. These processes need to be considered in the engineering of depolluting materials and incorporated into atmospheric models. De-soiling properties were investigated by analyzing soot oxidation on TiO2 surfaces. Model soot samples were used as surrogates of urban grime. Using laser desorption coupled with time-of-flight (TOF) mass spectrometry synchrotron ionization, we investigated the mechanisms of photocatalytic soot removal under UVA irradiation. Ancillary reflectance measurements were performed to determine the efficiency and kinetics of soot removal.

Strigolactones, a novel carotenoid-derived plant hormone.

PubMed

Al-Babili, Salim; Bouwmeester, Harro J

2015-01-01

Strigolactones (SLs) are carotenoid-derived plant hormones and signaling molecules. When released into the soil, SLs indicate the presence of a host to symbiotic fungi and root parasitic plants. In planta, they regulate several developmental processes that adapt plant architecture to nutrient availability. Highly branched/tillered mutants in Arabidopsis, pea, and rice have enabled the identification of four SL biosynthetic enzymes: a cis/trans-carotene isomerase, two carotenoid cleavage dioxygenases, and a cytochrome P450 (MAX1). In vitro and in vivo enzyme assays and analysis of mutants have shown that the pathway involves a combination of new reactions leading to carlactone, which is converted by a rice MAX1 homolog into an SL parent molecule with a tricyclic lactone moiety. In this review, we focus on SL biosynthesis, describe the hormonal and environmental factors that determine this process, and discuss SL transport and downstream signaling as well as the role of SLs in regulating plant development.

Soil food web properties explain ecosystem services across European land use systems.

PubMed

de Vries, Franciska T; Thébault, Elisa; Liiri, Mira; Birkhofer, Klaus; Tsiafouli, Maria A; Bjørnlund, Lisa; Bracht Jørgensen, Helene; Brady, Mark Vincent; Christensen, Søren; de Ruiter, Peter C; d'Hertefeldt, Tina; Frouz, Jan; Hedlund, Katarina; Hemerik, Lia; Hol, W H Gera; Hotes, Stefan; Mortimer, Simon R; Setälä, Heikki; Sgardelis, Stefanos P; Uteseny, Karoline; van der Putten, Wim H; Wolters, Volkmar; Bardgett, Richard D

2013-08-27

Intensive land use reduces the diversity and abundance of many soil biota, with consequences for the processes that they govern and the ecosystem services that these processes underpin. Relationships between soil biota and ecosystem processes have mostly been found in laboratory experiments and rarely are found in the field. Here, we quantified, across four countries of contrasting climatic and soil conditions in Europe, how differences in soil food web composition resulting from land use systems (intensive wheat rotation, extensive rotation, and permanent grassland) influence the functioning of soils and the ecosystem services that they deliver. Intensive wheat rotation consistently reduced the biomass of all components of the soil food web across all countries. Soil food web properties strongly and consistently predicted processes of C and N cycling across land use systems and geographic locations, and they were a better predictor of these processes than land use. Processes of carbon loss increased with soil food web properties that correlated with soil C content, such as earthworm biomass and fungal/bacterial energy channel ratio, and were greatest in permanent grassland. In contrast, processes of N cycling were explained by soil food web properties independent of land use, such as arbuscular mycorrhizal fungi and bacterial channel biomass. Our quantification of the contribution of soil organisms to processes of C and N cycling across land use systems and geographic locations shows that soil biota need to be included in C and N cycling models and highlights the need to map and conserve soil biodiversity across the world.

Soil food web properties explain ecosystem services across European land use systems

PubMed Central

de Vries, Franciska T.; Thébault, Elisa; Liiri, Mira; Birkhofer, Klaus; Tsiafouli, Maria A.; Bjørnlund, Lisa; Bracht Jørgensen, Helene; Brady, Mark Vincent; Christensen, Søren; de Ruiter, Peter C.; d’Hertefeldt, Tina; Frouz, Jan; Hedlund, Katarina; Hemerik, Lia; Hol, W. H. Gera; Hotes, Stefan; Mortimer, Simon R.; Setälä, Heikki; Sgardelis, Stefanos P.; Uteseny, Karoline; van der Putten, Wim H.; Wolters, Volkmar; Bardgett, Richard D.

2013-01-01

Intensive land use reduces the diversity and abundance of many soil biota, with consequences for the processes that they govern and the ecosystem services that these processes underpin. Relationships between soil biota and ecosystem processes have mostly been found in laboratory experiments and rarely are found in the field. Here, we quantified, across four countries of contrasting climatic and soil conditions in Europe, how differences in soil food web composition resulting from land use systems (intensive wheat rotation, extensive rotation, and permanent grassland) influence the functioning of soils and the ecosystem services that they deliver. Intensive wheat rotation consistently reduced the biomass of all components of the soil food web across all countries. Soil food web properties strongly and consistently predicted processes of C and N cycling across land use systems and geographic locations, and they were a better predictor of these processes than land use. Processes of carbon loss increased with soil food web properties that correlated with soil C content, such as earthworm biomass and fungal/bacterial energy channel ratio, and were greatest in permanent grassland. In contrast, processes of N cycling were explained by soil food web properties independent of land use, such as arbuscular mycorrhizal fungi and bacterial channel biomass. Our quantification of the contribution of soil organisms to processes of C and N cycling across land use systems and geographic locations shows that soil biota need to be included in C and N cycling models and highlights the need to map and conserve soil biodiversity across the world. PMID:23940339

Evaluation of soil processing conditions on mineralizable C and N across a textural gradient

USDA-ARS?s Scientific Manuscript database

Soil biological activity is an important component of a well-functioning soil. Methodologies for estimating this process in soil vary due to a variety of theoretical, functional, and expediency considerations. We tested the effects of soil processing (sieve size), water delivery method (from top a...

The survival strategy of the soil microbial biomass

NASA Astrophysics Data System (ADS)

Brookes, Philip; Kemmitt, Sarah; Dungait, Jennifer; Xu, Jianming

2014-05-01

The soil microbial biomass (biomass) is defined as the sum of the masses of all soil microorganisms > 5000 µm3 (e.g. fungi, bacteria, protozoa, yeasts, actinomycetes and algae). Typically comprising about 1 to 3 % of total soil organic matter (SOM), the biomass might be though to live in a highly substrate-rich environment. However, the SOM is, normally, only exceedingly slowly available to the biomass. However the biomass can survive for months or even years on this meagre energy source. Not surprisingly, therefore, the biomass exhibits many features typical of a dormant or resting population. These include a very low rate of basal and specific respiration, a slow rate of cell division (about once every six months on average) and slow turnover rate. These are clearly adaptations to existing in an environment where substrate availability is very low. Yet, paradoxically, the biomass, in soils worldwide, has an adenosine triphosphate (ATP) concentration (around 10 to 12 µmol ATP g-1 biomass C), and an Adenylate Energy Charge (AEC = [(ATP) + (0.5 ADP)]/[(ATP)+(ADP) + (AMP)]) which are typical of microorganisms growing exponentially in a chemostat. This sets us several questions. Firstly, under the condition of extremely limited substrate availability in soil, why does the biomass not mainly exist as spores, becoming active, by increasing both its ATP concentration and AEC, when substrate (plant and animal residues) becomes available? We surmise that a spore strategy may put organisms at a competitive disadvantage, compared to others which are prepared to invest energy, maintaining high ATP and ATP, to take advantage of a 'food event' as soon as it becomes available. Secondly, since SOM is available (although only very slowly) to the biomass, why have some groups not evolved the ability to mineralize it faster, obtain more energy, and so gain a competitive advantage? We believe that the reason why organisms do not use this strategy is, simply, that they cannot. Our explanation is that the rate of mineralization of humified SOM is not, as usually believed, regulated by microbial activity but by abiotic processes which are outside of the control of the biomass. We do not yet know what these processes are. They could involve diffusion from soil aggregates, oxidation processes, free radical reactions, other mechanisms, or none of these. We will present experimental evidence in support of our hypothesis - termed "The Regulatory Gate Hypothesis". If correct this hypothesis will have serious implication for our understanding of soil organic matter dynamics, CO2 evolution from soil and climate change.

Soil ecotoxicology in Brazil is taking its course.

PubMed

Niva, Cintia Carla; Niemeyer, Julia Carina; Júnior, Flávio Manoel Rodrigues Da Silva; Nunes, Maria Edna Tenório; De Sousa, Danilo Lourenço; Aragão, Clara Wandenkolck Silva; Sautter, Klaus Dieter; Espindola, Evaldo Gaeta; Sousa, José Paulo; Römbke, Jörg

2016-06-01

Soil ecotoxicology has been motivated by the increasing global awareness on environmental issues. Northern Hemisphere has been the main driver of this science branch; however, the number and quality of contributions from the Southern Hemisphere are increasing quickly. In this case study, Brazil is taken as an example of how soil ecotoxicology has developed over the last 30 years. It starts with a brief historical overview depicting the main events on soil ecotoxicology in the country. Following, an overview on the Brazilian legislation related to soil ecotoxicology is given, covering regulations with prospective focus, mainly on the registration of pesticides. Regulations with retrospective focus in contaminated areas are also given. Then, an outline of the actors in soil ecotoxicology and examples of prospective ecotoxicological studies performed with soil organisms and plants are given by stressor groups: pesticides, pharmaceuticals, metals, and residues. Experiences from retrospective studies, mainly looking at the assessment of industrial sites, are also covered. Emphasis is given on methodological aspects, pointing to needed actions, mainly regarding the different biotic and abiotic conditions of a tropical country. Finally, the last session discusses how soil ecotoxicology could be improved in methodological adaptations as well as legal requirements.

Response of Surface Soil Hydrology to the Micro-Pattern of Bio-Crust in a Dry-Land Loess Environment, China

PubMed Central

Wei, Wei; Yu, Yun; Chen, Liding

2015-01-01

The specific bio-species and their spatial patterns play crucial roles in regulating eco-hydrologic process, which is significant for large-scale habitat promotion and vegetation restoration in many dry-land ecosystems. Such effects, however, are not yet fully studied. In this study, 12 micro-plots, each with size of 0.5 m in depth and 1 m in length, were constructed on a gentle grassy hill-slope with a mean gradient of 8° in a semiarid loess hilly area of China. Two major bio-crusts, including mosses and lichens, had been cultivated for two years prior to the field simulation experiments, while physical crusts and non-crusted bare soils were used for comparison. By using rainfall simulation method, four designed micro-patterns (i.e., upper bio-crust and lower bare soil, scattered bio-crust, upper bare soil and lower bio-crust, fully-covered bio-crust) to the soil hydrological response were analyzed. We found that soil surface bio-crusts were more efficient in improving soil structure, water holding capacity and runoff retention particularly at surface 10 cm layers, compared with physical soil crusts and non-crusted bare soils. We re-confirmed that mosses functioned better than lichens, partly due to their higher successional stage and deeper biomass accumulation. Physical crusts were least efficient in water conservation and erosion control, followed by non-crusted bare soils. More importantly, there were marked differences in the efficiency of the different spatial arrangements of bio-crusts in controlling runoff and sediment generation. Fully-covered bio-crust pattern provides the best option for soil loss reduction and runoff retention, while a combination of upper bio-crust and lower bare soil pattern is the least one. These findings are suggested to be significant for surface-cover protection, rainwater infiltration, runoff retention, and erosion control in water-restricted and degraded natural slopes. PMID:26207757

Interactive biotic and abiotic regulators of soil carbon cycling: evidence from controlled climate experiments on peatland and boreal soils.

PubMed

Briones, María Jesús I; McNamara, Niall P; Poskitt, Jan; Crow, Susan E; Ostle, Nicholas J

2014-09-01

Partially decomposed plant and animal remains have been accumulating in organic soils (i.e. >40% C content) for millennia, making them the largest terrestrial carbon store. There is growing concern that, in a warming world, soil biotic processing will accelerate and release greenhouse gases that further exacerbate climate change. However, the magnitude of this response remains uncertain as the constraints are abiotic, biotic and interactive. Here, we examined the influence of resource quality and biological activity on the temperature sensitivity of soil respiration under different soil moisture regimes. Organic soils were sampled from 13 boreal and peatland ecosystems located in the United Kingdom, Ireland, Spain, Finland and Sweden, representing a natural resource quality range of C, N and P. They were incubated at four temperatures (4, 10, 15 and 20 °C) at either 60% or 100% water holding capacity (WHC). Our results showed that chemical and biological properties play an important role in determining soil respiration responses to temperature and moisture changes. High soil C : P and C : N ratios were symptomatic of slow C turnover and long-term C accumulation. In boreal soils, low bacterial to fungal ratios were related to greater temperature sensitivity of respiration, which was amplified in drier conditions. This contrasted with peatland soils which were dominated by bacterial communities and enchytraeid grazing, resulting in a more rapid C turnover under warmer and wetter conditions. The unexpected acceleration of C mineralization under high moisture contents was possibly linked to the primarily role of fermented organic matter, instead of oxygen, in mediating microbial decomposition. We conclude that to improve C model simulations of soil respiration, a better resolution of the interactions occurring between climate, resource quality and the decomposer community will be required. © 2014 John Wiley & Sons Ltd.

Response of Surface Soil Hydrology to the Micro-Pattern of Bio-Crust in a Dry-Land Loess Environment, China.

PubMed

Wei, Wei; Yu, Yun; Chen, Liding

2015-01-01

The specific bio-species and their spatial patterns play crucial roles in regulating eco-hydrologic process, which is significant for large-scale habitat promotion and vegetation restoration in many dry-land ecosystems. Such effects, however, are not yet fully studied. In this study, 12 micro-plots, each with size of 0.5 m in depth and 1 m in length, were constructed on a gentle grassy hill-slope with a mean gradient of 8° in a semiarid loess hilly area of China. Two major bio-crusts, including mosses and lichens, had been cultivated for two years prior to the field simulation experiments, while physical crusts and non-crusted bare soils were used for comparison. By using rainfall simulation method, four designed micro-patterns (i.e., upper bio-crust and lower bare soil, scattered bio-crust, upper bare soil and lower bio-crust, fully-covered bio-crust) to the soil hydrological response were analyzed. We found that soil surface bio-crusts were more efficient in improving soil structure, water holding capacity and runoff retention particularly at surface 10 cm layers, compared with physical soil crusts and non-crusted bare soils. We re-confirmed that mosses functioned better than lichens, partly due to their higher successional stage and deeper biomass accumulation. Physical crusts were least efficient in water conservation and erosion control, followed by non-crusted bare soils. More importantly, there were marked differences in the efficiency of the different spatial arrangements of bio-crusts in controlling runoff and sediment generation. Fully-covered bio-crust pattern provides the best option for soil loss reduction and runoff retention, while a combination of upper bio-crust and lower bare soil pattern is the least one. These findings are suggested to be significant for surface-cover protection, rainwater infiltration, runoff retention, and erosion control in water-restricted and degraded natural slopes.

7 CFR 330.105 - Inspection.

Code of Federal Regulations, 2011 CFR

2011-01-01

..., DEPARTMENT OF AGRICULTURE FEDERAL PLANT PEST REGULATIONS; GENERAL; PLANT PESTS; SOIL, STONE, AND QUARRY... products; soil; stone and quarry products under § 330.300; garbage; and any other product or article of any...; soil; stone or quarry products under § 330.300; garbage; or other products or articles which an...

7 CFR 330.105 - Inspection.

Code of Federal Regulations, 2010 CFR

2010-01-01

..., DEPARTMENT OF AGRICULTURE FEDERAL PLANT PEST REGULATIONS; GENERAL; PLANT PESTS; SOIL, STONE, AND QUARRY... products; soil; stone and quarry products under § 330.300; garbage; and any other product or article of any...; soil; stone or quarry products under § 330.300; garbage; or other products or articles which an...

7 CFR 330.105 - Inspection.

Code of Federal Regulations, 2012 CFR

2012-01-01

..., DEPARTMENT OF AGRICULTURE FEDERAL PLANT PEST REGULATIONS; GENERAL; PLANT PESTS; SOIL, STONE, AND QUARRY... products; soil; stone and quarry products under § 330.300; garbage; and any other product or article of any...; soil; stone or quarry products under § 330.300; garbage; or other products or articles which an...

7 CFR 330.105 - Inspection.

Code of Federal Regulations, 2014 CFR

2014-01-01

..., DEPARTMENT OF AGRICULTURE FEDERAL PLANT PEST REGULATIONS; GENERAL; PLANT PESTS; SOIL, STONE, AND QUARRY... products; soil; stone and quarry products under § 330.300; garbage; and any other product or article of any...; soil; stone or quarry products under § 330.300; garbage; or other products or articles which an...

7 CFR 330.105 - Inspection.

Code of Federal Regulations, 2013 CFR

2013-01-01

..., DEPARTMENT OF AGRICULTURE FEDERAL PLANT PEST REGULATIONS; GENERAL; PLANT PESTS; SOIL, STONE, AND QUARRY... products; soil; stone and quarry products under § 330.300; garbage; and any other product or article of any...; soil; stone or quarry products under § 330.300; garbage; or other products or articles which an...

Moss Mediates the Influence of Shrub Species on Soil Properties and Processes in Alpine Tundra.

PubMed

Bueno, C Guillermo; Williamson, Scott N; Barrio, Isabel C; Helgadóttir, Ágústa; HiK, David S

2016-01-01

In tundra ecosystems, bryophytes influence soil processes directly and indirectly through interactions with overstory shrub species. We experimentally manipulated moss cover and measured seasonal soil properties and processes under two species of deciduous shrubs with contrasting canopy structures, Salix planifolia pulchra and Betula glandulosa-nana complex. Soil properties (seasonal temperature, moisture and C:N ratios) and processes (seasonal litter decomposition and soil respiration) were measured over twelve months. Shrub species identity had the largest influence on summer soil temperatures and soil respiration rates, which were higher under Salix canopies. Mosses were associated with lower soil moisture irrespective of shrub identity, but modulated the effects of shrubs on winter soil temperatures and soil C:N ratios so that moss cover reduced differences in soil winter temperatures between shrub species and reduced C:N ratios under Betula but not under Salix canopies. Our results suggest a central role of mosses in mediating soil properties and processes, with their influence depending on shrub species identity. Such species-dependent effects need to be accounted for when forecasting vegetation dynamics under ongoing environmental changes.

Moss Mediates the Influence of Shrub Species on Soil Properties and Processes in Alpine Tundra

PubMed Central

Williamson, Scott N.; Barrio, Isabel C.; Helgadóttir, Ágústa; HiK, David S.

2016-01-01

In tundra ecosystems, bryophytes influence soil processes directly and indirectly through interactions with overstory shrub species. We experimentally manipulated moss cover and measured seasonal soil properties and processes under two species of deciduous shrubs with contrasting canopy structures, Salix planifolia pulchra and Betula glandulosa-nana complex. Soil properties (seasonal temperature, moisture and C:N ratios) and processes (seasonal litter decomposition and soil respiration) were measured over twelve months. Shrub species identity had the largest influence on summer soil temperatures and soil respiration rates, which were higher under Salix canopies. Mosses were associated with lower soil moisture irrespective of shrub identity, but modulated the effects of shrubs on winter soil temperatures and soil C:N ratios so that moss cover reduced differences in soil winter temperatures between shrub species and reduced C:N ratios under Betula but not under Salix canopies. Our results suggest a central role of mosses in mediating soil properties and processes, with their influence depending on shrub species identity. Such species-dependent effects need to be accounted for when forecasting vegetation dynamics under ongoing environmental changes. PMID:27760156

Different allocation of carbohydrates and phenolics in dehydrated leaves of triticale.

PubMed

Hura, Tomasz; Dziurka, Michał; Hura, Katarzyna; Ostrowska, Agnieszka; Dziurka, Kinga

2016-09-01

Carbohydrates are used in plant growth processes, osmotic regulation and secondary metabolism. A study of the allocation of carbohydrates to a target set of metabolites during triticale acclimation to soil drought was performed. The study included a semi-dwarf cultivar 'Woltario' and a long-stemmed cultivar 'Moderato', differing in the activity of the photosynthetic apparatus under optimum growth conditions. Differences were found in the quantitative and qualitative composition of individual carbohydrates and phenolic compounds, depending on the developmental stage and water availability. Soluble carbohydrates in the semi-dwarf 'Woltario' cv. under soil drought were utilized for synthesis of starch, soluble phenolic compounds and an accumulation of cell wall carbohydrates. In the typical 'Moderato' cv., soluble carbohydrates were primarily used for the synthesis of phenolic compounds that were then incorporated into cell wall structures. Increased content of cell wall-bound phenolics in 'Moderato' cv. improved the cell wall tightness and reduced the rate of leaf water loss. In 'Woltario' cv., the increase in cell osmotic potential due to an enhanced concentration of carbohydrates and proline was insufficient to slow down the rate of leaf water loss. The mechanism of cell wall tightening in response to leaf desiccation may be the main key in the process of triticale acclimation to soil drought. Copyright © 2016 Elsevier GmbH. All rights reserved.

The role of soil weathering and hydrology in regulating chemical fluxes from catchments (Invited)

NASA Astrophysics Data System (ADS)

Maher, K.; Chamberlain, C. P.

2010-12-01

Catchment-scale chemical fluxes have been linked to a number of different parameters that describe the conditions at the Earth’s surface, including runoff, temperature, rock type, vegetation, and the rate of tectonic uplift. However, many of the relationships relating chemical denudation to surface processes and conditions, while based on established theoretical principles, are largely empirical and derived solely from modern observations. Thus, an enhanced mechanistic basis for linking global solute fluxes to both surface processes and climate may improve our confidence in extrapolating modern solute fluxes to past and future conditions. One approach is to link observations from detailed soil-based studies with catchment-scale properties. For example, a number of recent studies of chemical weathering at the soil-profile scale have reinforced the importance of hydrologic processes in controlling chemical weathering rates. An analysis of data from granitic soils shows that weathering rates decrease with increasing fluid residence times and decreasing flow rates—over moderate fluid residence times, from 5 days to 10 years, transport-controlled weathering explains the orders of magnitude variation in weathering rates to a better extent than soil age. However, the importance of transport-controlled weathering is difficult to discern at the catchment scale because of the range of flow rates and fluid residence times captured by a single discharge or solute flux measurement. To assess the importance of transport-controlled weathering on catchment scale chemical fluxes, we present a model that links the chemical flux to the extent of reaction between the soil waters and the solids, or the fluid residence time. Different approaches for describing the distribution of fluid residence times within a catchment are then compared with the observed Si fluxes for a limited number of catchments. This model predicts high solute fluxes in regions with high run-off, relief, and long flow paths suggesting that the particular hydrologic setting of a landscape will be the underlying control on the chemical fluxes. As such, we reinterpret the large chemical fluxes that are observed in active mountain belts, like the Himalaya, to be primarily controlled by the long reactive flow paths created by the steep terrain coupled with high amounts of precipitation.

Examining responses of ecosystem carbon exchange to environmental changes using particle filtering mathod

NASA Astrophysics Data System (ADS)

Yokozawa, M.

2017-12-01

Attention has been paid to the agricultural field that could regulate ecosystem carbon exchange by water management and residual treatments. However, there have been less known about the dynamic responses of the ecosystem to environmental changes. In this study, focussing on paddy field, where CO2 emissions due to microbial decomposition of organic matter are suppressed and alternatively CH4 emitted under flooding condition during rice growth season and subsequently CO2 emission following the fallow season after harvest, the responses of ecosystem carbon exchange were examined. We conducted model data fusion analysis for examining the response of cropland-atmosphere carbon exchange to environmental variation. The used model consists of two sub models, paddy rice growth sub-model and soil decomposition sub-model. The crop growth sub-model mimics the rice plant growth processes including formation of reproductive organs as well as leaf expansion. The soil decomposition sub-model simulates the decomposition process of soil organic carbon. Assimilating the data on the time changes in CO2 flux measured by eddy covariance method, rice plant biomass, LAI and the final yield with the model, the parameters were calibrated using a stochastic optimization algorithm with a particle filter method. The particle filter method, which is one of the Monte Carlo filters, enable us to evaluating time changes in parameters based on the observed data until the time and to make prediction of the system. Iterative filtering and prediction with changing parameters and/or boundary condition enable us to obtain time changes in parameters governing the crop production as well as carbon exchange. In this study, we focused on the parameters related to crop production as well as soil carbon storage. As the results, the calibrated model with estimated parameters could accurately predict the NEE flux in the subsequent years. The temperature sensitivity, denoted by Q10s in the decomposition rate of soil organic carbon (SOC) were obtained as 1.4 for no cultivation period and 2.9 for cultivation period (submerged soil condition in flooding season). It suggests that the response of ecosystem carbon exchange differs due to SOC decomposition process which is sensitive to environmental variation during paddy rice cultivation period.

[Ecological regulation services of Hainan Island ecosystem and their valuation].

PubMed

Ouyang, Zhiyun; Zhao, Tongqian; Zhao, Jingzhu; Xiao, Han; Wang, Xiaoke

2004-08-01

Ecosystem services imply the natural environmental conditions on which human life relies for existence, and their effectiveness formed and sustained by ecosystem and its ecological processes. In newly research reports, they were divided into four groups, i. e., provisioning services, regulation services, cultural services, and supporting services. To assess and valuate ecosystem services is the foundation of regional environmental reserve and development. Taking Hainan Island as an example and based on the structure and processes of natural ecosystem, this paper discussed the proper methods for regulation services assessment. The ecosystems were classified into 13 types including valley rain forest, mountainous rain forest, tropical monsoon forest, mountainous coppice forest, mountainous evergreen forest, tropical coniferous forest, shrubs, plantation, timber forest, windbreak forest, mangrove, savanna, and cropland, and then, the regulation services and their economic values of Hainan Island ecosystem were assessed and evaluated by terms of water-holding, soil conservancy, nutrient cycle, C fixation, and windbreak function. The economic value of the regulation services of Hainan Island ecosystem was estimated as 2035.88 x 10(8)-2153.39 x 10(8) RMB yuan, 8 times higher to its provisioning services (wood and agricultural products) which were estimated as only 254.06 x 10(8) RMB yuan. The result implied that ecosystem regulation services played an even more important role in the sustainable development of society and economy in Hainan Island.

Climate change reduces the net sink of CH4 and N2O in a semiarid grassland.

PubMed

Dijkstra, Feike A; Morgan, Jack A; Follett, Ronald F; Lecain, Daniel R

2013-06-01

Atmospheric concentrations of methane (CH4 ) and nitrous oxide (N2 O) have increased over the last 150 years because of human activity. Soils are important sources and sinks of both potent greenhouse gases where their production and consumption are largely regulated by biological processes. Climate change could alter these processes thereby affecting both rate and direction of their exchange with the atmosphere. We examined how a rise in atmospheric CO2 and temperature affected CH4 and N2 O fluxes in a well-drained upland soil (volumetric water content ranging between 6% and 23%) in a semiarid grassland during five growing seasons. We hypothesized that responses of CH4 and N2 O fluxes to elevated CO2 and warming would be driven primarily by treatment effects on soil moisture. Previously we showed that elevated CO2 increased and warming decreased soil moisture in this grassland. We therefore expected that elevated CO2 and warming would have opposing effects on CH4 and N2 O fluxes. Methane was taken up throughout the growing season in all 5 years. A bell-shaped relationship was observed with soil moisture with highest CH4 uptake at intermediate soil moisture. Both N2 O emission and uptake occurred at our site with some years showing cumulative N2 O emission and other years showing cumulative N2 O uptake. Nitrous oxide exchange switched from net uptake to net emission with increasing soil moisture. In contrast to our hypothesis, both elevated CO2 and warming reduced the sink of CH4 and N2 O expressed in CO2 equivalents (across 5 years by 7% and 11% for elevated CO2 and warming respectively) suggesting that soil moisture changes were not solely responsible for this reduction. We conclude that in a future climate this semiarid grassland may become a smaller sink for atmospheric CH4 and N2 O expressed in CO2 -equivalents. © 2013 Blackwell Publishing Ltd.

Microbial Preference for Soil Organic Carbon Changes Along Redox Gradients as a Function of the Energetic Cost of Respiration

NASA Astrophysics Data System (ADS)

Naughton, H.; Keiluweit, M.; Fendorf, S. E.; Farrant, D. N.

2016-12-01

Soil organic carbon (SOC) chemistry is known to impact carbon preservation via mineral associations and physical protection, which chemically or physically block SOC from microbial enzymatic access for decomposition. However, SOC decay models that include these processes do not reliably predict SOC dynamics. We propose that the energetics of respiration additionally regulate SOC cycling. Specifically, organic carbon will only be respired if the available electron acceptors yield enough energy for microbial growth when metabolically coupled to the SOC. To test this hypothesis, we constructed dual pore domain reactors in which water flows normal to a column of packed soil, allowing oxygen to diffuse from the upper channel through the soil and establish a redox gradient. With increasing depth into the soil column, the soil experiences a typical redox profile indicative of anaerobic respiration processes: after oxygen is consumed, nitrate, Mn, Fe, and sulfate serve as electron acceptors. We measure porewater and effluent for nitrate, sulfate, Fe(II) and Mn(II) and take microsensor profiles of dissolved oxygen and H2S to characterize the redox gradient and respiration pathways. To this we couple incubations of solid material at each depth post-experiment and quantify CO2 and CH4 production to assess respiration potential along the redox gradient. Porewater SOC chemistry is analyzed via spectroscopy and mass spectrometry to interpret SOC oxidation state and composition and thus test thermodynamic predictions on SOC stability given the available redox acceptors at a given depth in the reactor. Within 0.5 cm of the soil surface, oxygen concentrations drop below detection and signs of anaerobic respiration (Fe(II) production, loss of nitrate) initiate while respiration rates drops precipitously. More oxidized SOC is preferentially utilized with progression along the redox gradient, supporting thermodynamic predictions. This work highlights the potential of SOC chemistry within specific redox metabolic zones of soils and sediments to drive carbon utilization. An improved understanding on organic carbon utliization is critical to predict SOC dynamics under changing hydrology (e.g. saltwater intrusion, permafrost melting), temperature, and other factors impacting microbial respiration energetics.

Bark Beetle Impacts on Ecosystem Processes are Over Quickly and Muted Spatially

NASA Astrophysics Data System (ADS)

Ewers, B. E.; Norton, U.; Borkhuu, B.; Reed, D. E.; Peckham, S. D.; Biederman, J. A.; King, A.; Gochis, D. J.; Brooks, P. D.; Harpold, A. A.; Frank, J. M.; Massman, W. J.; Mackay, D. S.; Pendall, E. G.

2013-12-01

The recent epidemic of bark beetles across western North America has impacted conifers from low to high elevations from New Mexico to Yukon. The mechanism of mortality is clear, with both mountain pine and spruce beetles killing trees by introducing xylem occluding blue stain fungi which dramatically stops transpiration. The visual impact of this outbreak is stunning, with mortality of canopy trees over 90% in some stands. However, emerging work shows that the impact on ecosystem processes is not as dramatic. We hypothesize that increased soil water and nitrogen sets up rapid succession of plant communities, which quickly restores ecosystem processing of water, carbon and nitrogen, while spatial patchiness of mortality and belowground responses mutes the impact as spatial scale increases from stands to watersheds. In support of our hypothesis we found 1) Soil nitrogen and moisture increase within one growing season but decrease to the same as uninfested stands five years later. 2) Soil respiration is correlated with live tree basal area suggesting a large component of autotrophic respiration. 3) Once stands have more than 50% basal area mortality, seedling density increases up to five fold and total non-tree understory cover increased two fold both within five years after infestation. 4) Ecosystem scale estimates of water vapor fluxes do not decline as rapidly as overstory leaf area. 5) Stable isotopes of snow, soil and stream water suggest that increased below canopy evapotranspiration nearly compensates for reduced canopy transpiration. 6) Nested watershed data shows that precipitation variations are much more important in regulating streamflow than changes in canopies from bark beetle induced mortality. These results were tested in the Terrestrial Regional Ecosystem Exchange Simulator (TREES) model. TREES was able to predict annual changes in the carbon fluxes but had difficulty simulating soil moisture and annual water budgets likely due to inadequate abiotic water vapor flux mechanisms and an explicit understory canopy layer. Our results show that ecosystems are resilient to the bark beetle epidemic and the resulting ecosystem process change is much less dramatic than might be expected based on the visual impact.

Nitrogen controls on ecosystem carbon sequestration: a model implementation and application to Saskatchewan, Canada

USGS Publications Warehouse

Liu, J.; Price, D.T.; Chen, J.M.

2005-01-01

A plant–soil nitrogen (N) cycling model was developed and incorporated into the Integrated BIosphere Simulator (IBIS) of Foley et al. [Foley, J.A., Prentice, I.C., Ramankutty, N., Levis, S., Pollard, D., Sitch, S., Haxeltine, A., 1996. An integrated biosphere model of land surface process, terrestrial carbon balance and vegetation dynamics. Global Biogeochem. Cycles 10, 603–628]. In the N-model, soil mineral N regulates ecosystem carbon (C) fluxes and ecosystem C:N ratios. Net primary productivity (NPP) is controlled by feedbacks from both leaf C:N and soil mineral N. Leaf C:N determines the foliar and canopy photosynthesis rates, while soil mineral N determines the N availability for plant growth and the efficiency of biomass construction. Nitrogen controls on the decomposition of soil organic matter (SOM) are implemented through N immobilization and mineralization separately. The model allows greater SOM mineralization at lower mineral N, and conversely, allows greater N immobilization at higher mineral N. The model's seasonal and inter-annual behaviours are demonstrated. A regional simulation for Saskatchewan, Canada, was performed for the period 1851–2000 at a 10 km × 10 km resolution. Simulated NPP was compared with high-resolution (1 km × 1 km) NPP estimated from remote sensing data using the boreal ecosystem productivity simulator (BEPS) [Liu, J., Chen, J.M., Cihlar, J., Park, W.M., 1997. A process-based boreal ecosystem productivity simulator using remote sensing inputs. Remote Sens. Environ. 44, 81–87]. The agreement between IBIS and BEPS, particularly in NPP spatial variation, was considerably improved when the N controls were introduced into IBIS.

Using a basin-scale hydrological model to estimate crop transpiration and soil evaporation

NASA Astrophysics Data System (ADS)

Kite, G.

2000-03-01

Increasing populations and expectations, declining crop yields and the resulting increased competition for water necesitate improvements in irrigation management and productivity. A key factor in defining agricultural productivity is to be able to simulate soil evaporation and crop transpiration. In agribusiness terms, crop transpiration is a useful process while soil and open-water evaporations are wasteful processes. In this study a distributed hydrological model was used to compute daily evaporation and transpiration for a variety of crops and other land covers within the 17,200 km 2 Gediz Basin in western Turkey. The model, SLURP, describes the complete hydrological cycle for each land cover within a series of sub-basins including all dams, reservoirs, regulators and irrigation schemes in the basin. The sub-basins and land covers are defined by analysing a digital elevation model and NOAA AVHRR satellite data. In this study, the model uses the FAO implementation of the Penman-Monteith equation to simulate soil evaporation and crop transpiration. The results of the model runs provide time series of data on streamflow at many points along the river system, abstractions and return flows from crops within the irrigation schemes and areally distributed soil evaporation and crop transpiration across the entire basin on each day of an 11 year period. The results show that evaporation and transpiration vary widely across the basin on any one day and over the irrigation season and can be used to evaluate the effectiveness of the various irrigation strategies used in the basin. The advantages of using such a model as compared to deriving evapotranspiration from satellite data are that the model obtains results for each day of an indefinitely long period, as opposed to occasional snapshots, and can also be used to simulate alternate scenarios.

Biogeochemical controls on microbial CH4 and CO2 production in Arctic polygon tundra

NASA Astrophysics Data System (ADS)

Zheng, J.

2016-12-01

Accurately simulating methane (CH4) and carbon dioxide (CO2) emissions from high latitude soils is critically important for reducing uncertainties in soil carbon-climate feedback predictions. The signature polygonal ground of Arctic tundra generates high level of heterogeneity in soil thermal regime, hydrology and oxygen availability, which limits the application of current land surface models with simple moisture response functions. We synthesized CH4 and CO2 production measurements from soil microcosm experiments across a wet-to dry permafrost degradation gradient from low-centered (LCP) to flat-centered (FCP), and high-centered polygons (HCP) to evaluate the relative importance of biogeochemical processes and their response to warming. More degraded polygon (HCP) showed much less carbon loss as CO2 or CH4, while the total CO2 production from FCP is comparable to that from LCP. Maximum CH4 production from the active layer of LCP was nearly 10 times that of permafrost and FCP. Multivariate analyses identifies gravimetric water content and organic carbon content as key predictors for CH4 production, and iron reduction as a key regulator of pH. The synthesized data are used to validate the geochemical model PHREEQC with extended anaerobic organic substrate turnover, fermentation, iron reduction, and methanogenesis reactions. Sensitivity analyses demonstrate that better representations of anaerobic processes and their pH dependency could significantly improve estimates of CH4 and CO2 production. The synthesized data suggest local decreases in CH4 production along the polygon degradation gradient, which is consistent with previous surface flux measurements. Methane oxidation occurring through the soil column of degraded polygons contributes to their low CH4 emissions as well.

Evaluation and Control of Soil Degradation in Russia on the Basis of the Assessment of Soil Ecological Functions

NASA Astrophysics Data System (ADS)

Yakovlev, Aleksandr

2016-04-01

Sustainable development of the territory is possible only under certain environmental requirements. These requirements are based on the implementation of the concept, conventionally called "zero land degradation", which cannot be reached in the process of real land use. "Zero degradation" is the establishment of acceptable ecological state of the environment and permissible anthropogenic impact on it, wherein self-healing of nature quality is possible and there is no accumulation of irreversible environmental damage. The values of parameters that characterize the relationship between the ecological state of the environment, in particular, land degradation, and the socio-economic development of the Russian Federation are represented in the materials of recent issues of the Russian State environmental report (2012 - 2014). Environmental problems in Russia are actively discussed in relation to issues of environmental and socio-economic development of the neighboring countries of the Eurasian region. So the Law "On Soil Protection", which was developed and adopted by the Union: Russia, Belarus, Kazakhstan, is dedicated to the protection of soil and soil degradation control. Ecological Doctrine of Russia (2012) and the State Environmental Program (2012-2020) identify the main strategic steps to combat land degradation in our country. In the first place, it has been tasked to identify and eliminate past environmental damage followed by the organization of nature "from scratch", in accordance with environmental regulations. Currently the Ministry of natural resources of Russia started implementation of the Federal program on environmental-economic assessment and the elimination of past environmental damage. The main steps of this program are: the works related to the inventory of degraded and contaminated lands and their subsequent reclamation and return to the appropriate land use system. The territory must comply with officially approved environmental requirements. The list of requirements can be divided into two areas: - the standards and norms of environmental assessment for all components of environment, - requirements to the level of environmental stress on the land when designing the system of nature management. Environmental requirements for components of the environment are based primarily on stringent environmental and health standards (maximum permissible concentration, permissible residual oil content in the soil, etc.), compliance of which involves the maintenance of the ecological state of nature in close to background rates. The assessment of environmental stress in planning and land management is not provided with official regulations and is based primarily on expert opinions. However, projects and land use programs must pass the corresponding procedure of environmental expertise. Rating, ranking and regulation of soil and land quality allow to establish the level of its disturbance and the ability to heal itself, according to the methodological approach developed and adopted by several Russian Agencies (Environmental, Agricultural and Land use Agencies). The basis for assessing the ecological status of soils was based on the five-level evaluation scale according to which a fairly conventional boundary of reversibility is considered to be the third (threshold) level, and irreversible accumulation of environmental damage occurs when reaching . fourth and fifth level of loss of environmental quality of soils. According to a separate study in the field of environmental regulation irreversible changes occur in the loss of more than a quarter of Bioorganic capacity of soils. The main condition for sustainable development is the development, which does not cause irreversible damage to nature and society, based on compliance with environmental quality requirements for components of the environment, particularly soils and lands and secure planning and safe placement of the productive forces. Acknowledgments: This study was supported by the Russian Science Foundation, project no. 143800023.

Maximizing root/rhizosphere efficiency to improve crop productivity and nutrient use efficiency in intensive agriculture of China.

PubMed

Shen, Jianbo; Li, Chunjian; Mi, Guohua; Li, Long; Yuan, Lixing; Jiang, Rongfeng; Zhang, Fusuo

2013-03-01

Root and rhizosphere research has been conducted for many decades, but the underlying strategy of root/rhizosphere processes and management in intensive cropping systems remain largely to be determined. Improved grain production to meet the food demand of an increasing population has been highly dependent on chemical fertilizer input based on the traditionally assumed notion of 'high input, high output', which results in overuse of fertilizers but ignores the biological potential of roots or rhizosphere for efficient mobilization and acquisition of soil nutrients. Root exploration in soil nutrient resources and root-induced rhizosphere processes plays an important role in controlling nutrient transformation, efficient nutrient acquisition and use, and thus crop productivity. The efficiency of root/rhizosphere in terms of improved nutrient mobilization, acquisition, and use can be fully exploited by: (1) manipulating root growth (i.e. root development and size, root system architecture, and distribution); (2) regulating rhizosphere processes (i.e. rhizosphere acidification, organic anion and acid phosphatase exudation, localized application of nutrients, rhizosphere interactions, and use of efficient crop genotypes); and (3) optimizing root zone management to synchronize root growth and soil nutrient supply with demand of nutrients in cropping systems. Experiments have shown that root/rhizosphere management is an effective approach to increase both nutrient use efficiency and crop productivity for sustainable crop production. The objectives of this paper are to summarize the principles of root/rhizosphere management and provide an overview of some successful case studies on how to exploit the biological potential of root system and rhizosphere processes to improve crop productivity and nutrient use efficiency.

A process-based framework for soil ecosystem services study and management.

PubMed

Su, Changhong; Liu, Huifang; Wang, Shuai

2018-06-15

Soil provides various indispensable ecosystem services for human society. Soil's complex structure and property makes the soil ecological processes complicated and brings about tough challenges for soil ecosystem services study. Most of the current frameworks on soil services focus exclusively on services per se, neglecting the links and underlying ecological mechanisms. This article put forward a framework on soil services by stressing the underlying soil mechanisms and processes, which includes: 1) analyzing soil natural capital stock based on soil structure and property, 2) disentangling the underlying complex links and soil processes, 3) soil services valuation based on field investigation and spatial explicit models, and 4) enacting soil management strategy based on soil services and their driving factors. By application of this framework, we assessed the soil services of sediment retention, water yield, and grain production in the Upper-reach Fenhe Watershed. Based on the ecosystem services and human driving factors, the whole watershed was clustered into five groups: 1) municipal area, 2) typical coal mining area, 3) traditional farming area, 4) unsustainable urbanizing area, and 5) ecological conservation area. Management strategies on soils were made according to the clustering based soil services and human activities. Copyright © 2018 Elsevier B.V. All rights reserved.

7 CFR 330.100 - Definitions.

Code of Federal Regulations, 2010 CFR

2010-01-01

..., DEPARTMENT OF AGRICULTURE FEDERAL PLANT PEST REGULATIONS; GENERAL; PLANT PESTS; SOIL, STONE, AND QUARRY... composing part of the surface of the globe, in distinction from the firm rock, and including the soil and subsoil, as well as finely divided rock and other soil formation materials down to the rock layer. Garbage...

7 CFR 330.100 - Definitions.

Code of Federal Regulations, 2011 CFR

2011-01-01

..., DEPARTMENT OF AGRICULTURE FEDERAL PLANT PEST REGULATIONS; GENERAL; PLANT PESTS; SOIL, STONE, AND QUARRY... composing part of the surface of the globe, in distinction from the firm rock, and including the soil and subsoil, as well as finely divided rock and other soil formation materials down to the rock layer. Garbage...

7 CFR 330.100 - Definitions.

Code of Federal Regulations, 2012 CFR

2012-01-01

..., DEPARTMENT OF AGRICULTURE FEDERAL PLANT PEST REGULATIONS; GENERAL; PLANT PESTS; SOIL, STONE, AND QUARRY... composing part of the surface of the globe, in distinction from the firm rock, and including the soil and subsoil, as well as finely divided rock and other soil formation materials down to the rock layer. Garbage...

7 CFR 330.100 - Definitions.

Code of Federal Regulations, 2014 CFR

2014-01-01

..., DEPARTMENT OF AGRICULTURE FEDERAL PLANT PEST REGULATIONS; GENERAL; PLANT PESTS; SOIL, STONE, AND QUARRY... composing part of the surface of the globe, in distinction from the firm rock, and including the soil and subsoil, as well as finely divided rock and other soil formation materials down to the rock layer. Garbage...

7 CFR 330.100 - Definitions.

Code of Federal Regulations, 2013 CFR

2013-01-01

..., DEPARTMENT OF AGRICULTURE FEDERAL PLANT PEST REGULATIONS; GENERAL; PLANT PESTS; SOIL, STONE, AND QUARRY... composing part of the surface of the globe, in distinction from the firm rock, and including the soil and subsoil, as well as finely divided rock and other soil formation materials down to the rock layer. Garbage...

Plant-soil feedbacks and mycorrhizal type influence temperate forest population dynamics

USDA-ARS?s Scientific Manuscript database

Feedback with soil biota is a major driver of diversity within terrestrial plant communities. However, little is known about the factors regulating plant-soil feedback, which can vary from positive to negative among plant species. In a large-scale observational and experimental study involving 55 sp...

In-Soil and Down-Hole Soil Water Sensors: Characteristics for Irrigation Management

USDA-ARS?s Scientific Manuscript database

The past use of soil water sensors for irrigation management was variously hampered by high cost, onerous regulations in the case of the neutron probe (NP), difficulty of installation or maintenance, and poor accuracy. Although many sensors are now available, questions of their utility still abound....

Anaerobic soil disinfestation: a chemical-independent approach to pre-plant control of plant pathogens

USDA-ARS?s Scientific Manuscript database

Due to increasing regulations and restrictions, there is an urgent need to develop effective alternatives to chemical-dependent soil fumigation control of soilborne pests and pathogens. Anaerobic soil disinfestation (ASD) is one such alternative showing great promise against a number of soilborne pa...

Tillage and straw management affect PM10 emission potential in subarctic Alaska

USDA-ARS?s Scientific Manuscript database

Emission of PM10 (particulates =10 um in diameter regulated by many nations as an air pollutant) from agricultural soils can impact regional air quality. Little information exists that describes the potential for PM10 and airborne dust emissions from subarctic soils or agricultural soils subject to ...

Elemental concentrations in the seed of mutants and natural variants of Arabidopsis thaliana grown under varying soil conditions.

PubMed

McDowell, Stephen C; Akmakjian, Garo; Sladek, Chris; Mendoza-Cozatl, David; Morrissey, Joe B; Saini, Nick; Mittler, Ron; Baxter, Ivan; Salt, David E; Ward, John M; Schroeder, Julian I; Guerinot, Mary Lou; Harper, Jeffrey F

2013-01-01

The concentrations of mineral nutrients in seeds are critical to both the life cycle of plants as well as human nutrition. These concentrations are strongly influenced by soil conditions, as shown here by quantifying the concentration of 14 elements in seeds from Arabidopsis thaliana plants grown under four different soil conditions: standard, or modified with NaCl, heavy metals, or alkali. Each of the modified soils resulted in a unique change to the seed ionome (the mineral nutrient content of the seeds). To help identify the genetic networks regulating the seed ionome, changes in elemental concentrations were evaluated using mutants corresponding to 760 genes as well as 10 naturally occurring accessions. The frequency of ionomic phenotypes supports an estimate that as much as 11% of the A. thaliana genome encodes proteins of functional relevance to ion homeostasis in seeds. A subset of mutants were analyzed with two independent alleles, providing five examples of genes important for regulation of the seed ionome: SOS2, ABH1, CCC, At3g14280 and CNGC2. In a comparison of nine different accessions to a Col-0 reference, eight accessions were observed to have reproducible differences in elemental concentrations, seven of which were dependent on specific soil conditions. These results indicate that the A. thaliana seed ionome is distinct from the vegetative ionome, and that elemental analysis is a sensitive approach to identify genes controlling ion homeostasis, including those that regulate gene expression, phospho-regulation, and ion transport.

Modeling the unmeasurable: scaling soil physiology from microns to meters and seconds to centuries (Invited)

NASA Astrophysics Data System (ADS)

Schimel, J.; Xu, X.; Lawrence, C. R.

2013-12-01

Models are essential tools for linking microbial dynamics to their manifestations at large scales. Yet, developing mechanistically accurate models requires data that we often don't have and may not be able to get, such as the functional life-span of an extracellular enzyme. Yet there are approaches to condense complex microbial dynamics into 'workable' models. One example is in describing soil responses to moisture pulses. We developed a family of five separate models to capture microbial dynamics through dry/wet cycles. The simplest was a straight multi-pool, 1st-order decomposition model, with versions adding levels of microbial mechanism, culminating in one that included exoenzyme-breakdown of detritus. However, this identified the critical mechanism, not as exoenzymes, but as the production of a bioavailable C pool that accumulates in dry soil and is rapidly metabolized on rewetting. A final version of the model therefore stripped out explicit enzymes but retained separate polymer breakdown and substrate use; this model was the most robust. A second pervasive question in soil biology has been what controls the size of the microbial biomass across biomes? We approached this through a physiological model that regulated microbial C assimilation into biomass by two processes: initial assimilation followed by ongoing maintenance. Assimilation is a function of substrate quality, while maintenance is regulated by climate--notably the period of the year during which microbes are active. This model was tested against a global dataset of microbial biomass. It explains why, for example, deserts and tundra have relatively high proportions of their organic matter in microbial biomass, while the low substrate quality and long active periods common in temperate conifer forests lead to low biomass levels.

Biological Nitrogen Fixation In Tropical Dry Forests Of Costa Rica

NASA Astrophysics Data System (ADS)

Gei, M. G.; Powers, J. S.

2012-12-01

Evidence suggests that tropical dry forests (TDF) are not nitrogen (N) deficient. This evidence includes: high losses of gaseous nitrogen during the rainy season, high ecosystem soil N stocks and high N concentrations in leaves and litterfall. Its been commonly hypothesized that biological nitrogen fixation is responsible for the high availability of N in tropical soils. However, the magnitude of this flux has rarely if ever been measured in tropical dry forests. Because of the high cost of fixing N and the ubiquity of N fixing legume trees in the TDF, at the individual tree level symbiotic fixation should be a strategy down-regulated by the plant. Our main goal was to determine the rates of and controls over symbiotic N fixation. We hypothesized that legume tree species employ a facultative strategy of nitrogen fixation and that this process responds to changes in light availability, soil moisture and nutrient supply. We tested this hypothesis both on naturally established trees in a forest and under controlled conditions in a shade house by estimating the quantities of N fixed annually using the 15N natural abundance method, counting nodules, and quantifying (field) or manipulating (shade house) the variation in important environmental variables (soil nutrients, soil moisture, and light). We found that in both in our shade house experiment and in the forest, nodulation varied among different legume species. For both settings, the 15N natural abundance approach successfully detected differences in nitrogen fixation among species. The legume species that we studied were able to regulate fixation depending on the environmental conditions. They showed to have different strategies of nitrogen fixation that follow a gradient of facultative to obligate fixation. Our data suggest that there exists a continuum of nitrogen fixation strategies among species. Any efforts to define tropical legume trees as a functional group need to incorporate this variation.

Precipitation pulses and carbon fluxes in semiarid and arid ecosystems.

PubMed

Huxman, Travis E; Snyder, Keirith A; Tissue, David; Leffler, A Joshua; Ogle, Kiona; Pockman, William T; Sandquist, Darren R; Potts, Daniel L; Schwinning, Susan

2004-10-01

In the arid and semiarid regions of North America, discrete precipitation pulses are important triggers for biological activity. The timing and magnitude of these pulses may differentially affect the activity of plants and microbes, combining to influence the C balance of desert ecosystems. Here, we evaluate how a "pulse" of water influences physiological activity in plants, soils and ecosystems, and how characteristics, such as precipitation pulse size and frequency are important controllers of biological and physical processes in arid land ecosystems. We show that pulse size regulates C balance by determining the temporal duration of activity for different components of the biota. Microbial respiration responds to very small events, but the relationship between pulse size and duration of activity likely saturates at moderate event sizes. Photosynthetic activity of vascular plants generally increases following relatively larger pulses or a series of small pulses. In this case, the duration of physiological activity is an increasing function of pulse size up to events that are infrequent in these hydroclimatological regions. This differential responsiveness of photosynthesis and respiration results in arid ecosystems acting as immediate C sources to the atmosphere following rainfall, with subsequent periods of C accumulation should pulse size be sufficient to initiate vascular plant activity. Using the average pulse size distributions in the North American deserts, a simple modeling exercise shows that net ecosystem exchange of CO2 is sensitive to changes in the event size distribution representative of wet and dry years. An important regulator of the pulse response is initial soil and canopy conditions and the physical structuring of bare soil and beneath canopy patches on the landscape. Initial condition influences responses to pulses of varying magnitude, while bare soil/beneath canopy patches interact to introduce nonlinearity in the relationship between pulse size and soil water response. Building on this conceptual framework and developing a greater understanding of the complexities of these eco-hydrologic systems may enhance our ability to describe the ecology of desert ecosystems and their sensitivity to global change.

Genome-wide transcriptome profiling of black poplar (Populus nigra L.) under boron toxicity revealed candidate genes responsible in boron uptake, transport and detoxification.

PubMed

Yıldırım, Kubilay; Uylaş, Senem

2016-12-01

Boron (B) is an essential nutrient for normal growth of plants. Despite its low abundance in soils, it could be highly toxic to plants in especially arid and semi-arid environments. Poplars are known to be tolerant species to B toxicity and accumulation. However, physiological and gene regulation responses of these trees to B toxicity have not been investigated yet. Here, B accumulation and tolerance level of black poplar clones were firstly tested in the current study. Rooted cutting of these clones were treated with elevated B toxicity to select the most B accumulator and tolerant genotype. Then we carried out a microarray based transcriptome experiment on the leaves and roots of this genotype to find out transcriptional networks, genes and molecular mechanisms behind B toxicity tolerance. The results of the study indicated that black poplar is quite suitable for phytoremediation of B pollution. It could resist 15 ppm soil B content and >1500 ppm B accumulation in leaves, which are highly toxic concentrations for almost all agricultural plants. Transcriptomics results of study revealed totally 1625 and 1419 altered probe sets under 15 ppm B toxicity in leaf and root tissues, respectively. The highest induction were recorded for the probes sets annotated to tyrosine aminotransferase, ATP binding cassette transporters, glutathione S transferases and metallochaperone proteins. Strong up regulation of these genes attributed to internal excretion of B into the cell vacuole and existence of B detoxification processes in black poplar. Many other candidate genes functional in signalling, gene regulation, antioxidation, B uptake and transport processes were also identified in this hyper B accumulator plant for the first time with the current study. Copyright © 2016 Elsevier Masson SAS. All rights reserved.

Light availability and soil flooding regulate photosynthesis of an imperiled shrub in lowland forests of the Mississippi Alluvial Valley, USA

Treesearch

B. R. Lockhart; E. S. Gardiner; T. D. Leininger; M. S. Devall; A. D. Wilson; K. F. Connor; P. B. Hamel; N. M. Schiff

2017-01-01

Physiological responses to light availability and soil flooding on Lindera melissifolia (Walt.) Blume were studied. Shrubswere grown under 70, 37 or 5% of full sunlight with either 0, 45, or 90 d of soil flooding. We measured leaf photosyntheticrate (PN) to test the hypothesis that soil flooding reduces PN in L. melissifolia following shrub...

Low pH, aluminum and phosphorus coordinately regulate malate exudation through GmALMT1 to improve soybean adaptation to acid soils

USDA-ARS?s Scientific Manuscript database

Low pH, aluminum (Al) toxicity and low phosphorus (P) often coexist in acid soils where crops need to cope with these multiple limiting factors. In this study we found that P addition to acid soils alleviates Al toxicity and enhanced soybean adaptation to acid soils, especially for the P-efficient g...

Synergistic method for boreal soil moisture and soil freeze retrievals using active and passive microwave instruments

NASA Astrophysics Data System (ADS)

Smolander, Tuomo; Lemmetyinen, Juha; Rautiainen, Kimmo; Schwank, Mike; Pulliainen, Jouni

2017-04-01

Soil moisture and soil freezing are important for diverse hydrological, biogeochemical, and climatological applications. They affect surface energy balance, surface and subsurface water flow, and exchange rates of carbon with the atmosphere. Soil freezing controls important biogeochemical processes, like photosynthetic activity of plants and microbial activity within soils. Permafrost covers approximately 24% of the land surface in the Northern Hemisphere and seasonal freezing occurs on approximately 51% of the area. The retrieval method presented is based on an inversion technique and applies a semiempirical backscattering model that describes the dependence of radar backscattering of forest as a function of stem volume, soil permittivity, the extinction coefficient of forest canopy, surface roughness, incidence angle, and radar frequency. It gives an estimate of soil permittivity using active microwave measurements. Applying a Bayesian assimilation scheme, it is also possible to use other soil permittivity retrievals to regulate this estimate to combine for example low resolution passive observations with high resolution active observations for a synergistic retrieval. This way the higher variance in the active retrieval can be constricted with the passive retrieval when at the same time the spatial resolution of the product is improved compared to the passive-only retrieval. The retrieved soil permittivity estimate can be used to detect soil freeze/thaw state by considering the soil to be frozen when the estimate is below a threshold value. The permittivity retrieval can also be used to estimate the relative moisture of the soil. The method was tested using SAR (Synthetic Aperture Radar) measurements from ENVISAT ASAR instrument for the years 2010-2012 and from Sentinel-1 satellite for the years 2015-2016 in Sodankylä area in Northern Finland. The synergistic method was tested combining the SAR measurements with a SMOS (Soil Moisture Ocean Salinity) radiometer based retrieval. The results were validated using in situ measurements from automatic soil state observation stations in Sodankylä calibration and validation (CAL-VAL) site, which is a reference site for several EO (Earth Observation) data products.

[Heavy metals and hydrocarbons content in soils of settlements of the Yamal-Nenets autonomous region].

PubMed

Alekseev, I I; Abakumov, E V; Shamilishvili, G A; Lodygin, E D

In August 2015 there were executed investigations on the study of the soils diversity of the Yamal-Nenets Autonomous Okrug. One of the directions of this work got be the study of urban soils of settlements of the Yamal-Nenents Autonomous Okrug. The sectors for the observation were settlement of Harsaim, village Aksarka, city of Salekhard, settlement Harp and city of Labytnangi. About 20 soil samples were collected during the field work. Samples were collected from a depth of 0-5 cm and 5-20 cm. Heavy metals (HM) were detected with the use of X-ray fluorescent analyzer “Spectroscan-MAX”. The HM content values were compared with the corresponding Approxible Permissible Concentrations and Maximum Allowable Concentrations (MAC) adopted in Russia. Hydrocarbons content was determined by gravimetric method. Values of the hydrocarbons content in studied soils were compared with the existing regulations of the Russian Federation. The levels of soil contamination by hydrocarbons were determined. The study of soil samples from different settlements allowed to reveal characteristic features of soil contamination of separate settlements by HM and hydrocarbons and to compare them against each other. The vast majority of samples are characterized by arsenic exceedance of MAC, which should indicate to a high regional background of this element. For a more adequate assessment of the Zc meaning as the value of the total pollution index of soils there were used not only arithmetical average values of the coefficients of the chemical composition concentration (Kc), but also their average geometric values. According to levels of total soil contamination most of soil samples are characterized as non-hazardous (Zc<16). Calculation of soil pollution index showed that the most of soil samples have values less than 1. It characterizes soils as unpolluted. Statistical processing of obtained data in the media of the analytical software interface STATISTICA 10 showed a statistically significant difference in the content ofHM and hydrocarbons for the layer of 0-20 cm of the soils for three elements (Cu, Zn, Ni).

Interactions between soil thermal and hydrological dynamics in the response of Alaska ecosystems to fire disturbance

Treesearch

Shuhua Yi; David McGuire; Jennifer Harden; Eric Kasischke; Kristen Manies; Larr Hinzman; Anna Liljedahl; Jim Randerson; Heping Liu; Vladimire Romanovsky; Sergei Marchenko; Yongwon Kim

2009-01-01

Soil temperature and moisture are important factors that control many ecosystem processes. However, interactions between soil thermal and hydrological processes are not adequately understood in cold regions, where the frozen soil, fire disturbance, and soil drainage play important roles in controlling interactions among these processes. These interactions were...

Effects of fire on major forest ecosystem processes: an overview.

PubMed

Chen, Zhong

2006-09-01

Fire and fire ecology are among the best-studied topics in contemporary ecosystem ecology. The large body of existing literature on fire and fire ecology indicates an urgent need to synthesize the information on the pattern of fire effects on ecosystem composition, structure, and functions for application in fire and ecosystem management. Understanding fire effects and underlying principles are critical to reduce the risk of uncharacteristic wildfires and for proper use of fire as an effective management tool toward management goals. This overview is a synthesis of current knowledge on major effects of fire on fire-prone ecosystems, particularly those in the boreal and temperate regions of the North America. Four closely related ecosystem processes in vegetation dynamics, nutrient cycling, soil and belowground process and water relations were discussed with emphases on fire as the driving force. Clearly, fire can shape ecosystem composition, structure and functions by selecting fire adapted species and removing other susceptible species, releasing nutrients from the biomass and improving nutrient cycling, affecting soil properties through changing soil microbial activities and water relations, and creating heterogeneous mosaics, which in turn, can further influence fire behavior and ecological processes. Fire as a destructive force can rapidly consume large amount of biomass and cause negative impacts such as post-fire soil erosion and water runoff, and air pollution; however, as a constructive force fire is also responsible for maintaining the health and perpetuity of certain fire-dependent ecosystems. Considering the unique ecological roles of fire in mediating and regulating ecosystems, fire should be incorporated as an integral component of ecosystems and management. However, the effects of fire on an ecosystem depend on the fire regime, vegetation type, climate, physical environments, and the scale of time and space of assessment. More ecosystem-specific studies are needed in future, especially those focusing on temporal and spatial variations of fire effects through long-term experimental monitoring and modeling.

Study on the distribution of organic carbon in soil fractions and its reaction potential of binding the pesticides

NASA Astrophysics Data System (ADS)

Chowdhury, Ashim

2010-05-01

STUDY ON THE DISTRIBUTION OF ORGANIC CARBON IN SOIL FRACTIONS AND ITS REACTION POTENTIAL OF BINDING THE PESTICIDES **SUMITRA ROY1, SANKHAJIT ROY1, *ASHIM CHOWDHURY2, SASWATI PRADHAN2 and PETER BURAUEL3 1Department of Agricultural Chemicals, Bidhan Chandra Krishi Viswavidyalay, Mohanpur, West Bengal, India. 2Department of Agricultural Chemistry and Soil Science, University of Calcutta, West Bengal, India. 3Institute of Chemical Dynamics & Geosphere, FZ-Juelich, Germany. *Correspondence: ashimkly@hotmail.com **Research work carried out as DAAD Sandwich research fellow at FZ- Juelich, Germany Soil is the ultimate sink of all selectively applied pesticides. In addition to the basic physicochemical data of an active ingredient, the fate of the various compounds is largely determined by the type of application. Finally, pesticide and their metabolites, as well as structural elements, remain in the native carbon reserves of the soil or are sorbed & fixed to clay minerals and clay- humus complexes. Soil organic matter (SOM) and the soil microbial community are the crucial components which regulate soil processes and contribute towards the stability of the soil ecosystem. It is an energy source for biological mineralization processes, functions as a buffer and participates in chemical reaction. Knowledge is essential to understand the extent to which the SOM influences the mobilization and immobilization processes of foreign substance in soil and the substance transport and pollutant decomposition in soil. The freshly incorporated organic matter undergoes mineralization and the non mineralized carbon fraction is of special relevance with respect to soil stability in general and decisive for the fate and particular the persistence of xenobiotics in soil. The biological and physicochemical interactions establishing equilibrium between the organic matter bound, fixed or complexed to the soil matrix and that dissolve in the soil solution must be understood in detail to realize soil and groundwater conservation. The radio-tracer technology emerged as the latest technology in agriculture, which helps in studying the translocation of pesticide along with the organic matter and furthermore, the distribution of the pesticide in the soil phases. For the elucidation of these relationships and distribution of organic carbon in soil fractions and its reaction potential of binding the pesticides, the present laboratory study was undertaken using 14C-enriched and non labeled maize straw as a source of fresh SOM in different soil fractions vis-à-vis its effect on distribution of 14C-labeled benazolin and non labeled benazolin (a selective, post emergence herbicide) as a xenobiotics throughout the soil system. To determine the turnover of SOM fractionation of top layer of the both the benazolin treated soil column was done followed by determination of 14C content in four different soil phases obtained from fraction, characterization of different phase and identification of the metabolites with TLC, HPLC and GC-MS. The result clearly indicated that where soil columns received non- labeled maize straw and 14C-benazolin as well as 14C-labeled maize straw and nonlabeled benazolin; the unit weight distribution study of radioactivity in benazolin followed the decreasing trend in different phases in following order of electrolyte>colloidal> micro aggregate > sediment phases respectively. The percentage distribution of maize straw (fresh organic matter) was also found highest in electrolyte phase followed the same order as in the case of benazolin. It was observed in phase-wise distribution study that radioactivity either of 14C-maize straw or 14C-benazolin was mostly concentrated in the sediment phase followed by micro aggregate, colloidal and electrolyte phase. From this it was clear that the soil columns, which received maize straw, have bound the pesticide benazolin and hindered the translocation to the lower layers leading to higher percentage of recovered radioactivity at top layer. Thus, these two results can be correlated in a way that dissolve organic matter affects the mobility of the pesticide along with its own mobility.

Bioavailability of xenobiotics in the soil environment.

PubMed

Katayama, Arata; Bhula, Raj; Burns, G Richard; Carazo, Elizabeth; Felsot, Allan; Hamilton, Denis; Harris, Caroline; Kim, Yong-Hwa; Kleter, Gijs; Koedel, Werner; Linders, Jan; Peijnenburg, J G M Willie; Sabljic, Aleksandar; Stephenson, R Gerald; Racke, D Kenneth; Rubin, Baruch; Tanaka, Keiji; Unsworth, John; Wauchope, R Donald

2010-01-01

It is often presumed that all chemicals in soil are available to microorganisms, plant roots, and soil fauna via dermal exposure. Subsequent bioaccumulation through the food chain may then result in exposure to higher organisms. Using the presumption of total availability, national governments reduce environmental threshold levels of regulated chemicals by increasing guideline safety margins. However, evidence shows that chemical residues in the soil environment are not always bioavailable. Hence, actual chemical exposure levels of biota are much less than concentrations present in soil would suggest. Because "bioavailability" conveys meaning that combines implications of chemical sol persistency, efficacy, and toxicity, insights on the magnitude of a chemicals soil bioavailability is valuable. however, soil bioavailability of chemicals is a complex topic, and is affected by chemical properties, soil properties, species exposed, climate, and interaction processes. In this review, the state-of-art scientific basis for bioavailability is addressed. Key points covered include: definition, factors affecting bioavailability, equations governing key transport and distributive kinetics, and primary methods for estimating bioavailability. Primary transport mechanisms in living organisms, critical to an understanding of bioavailability, also presage the review. Transport of lipophilic chemicals occurs mainly by passive diffusion for all microorganisms, plants, and soil fauna. Therefore, the distribution of a chemical between organisms and soil (bioavailable proportion) follows partition equilibrium theory. However, a chemical's bioavailability does not always follow partition equilibrium theory because of other interactions with soil, such as soil sorption, hysteretic desorption, effects of surfactants in pore water, formation of "bound residue", etc. Bioassays for estimating chemical bioavailability have been introduced with several targeted endpoints: microbial degradation, uptake by higher plants and soil fauna, and toxicity to organisms. However, there bioassays are often time consuming and laborious. Thus, mild extraction methods have been employed to estimate bioavailability of chemicals. Mild methods include sequential extraction using alcohols, hexane/water, supercritical fluids (carbon dioxide), aqueous hydroxypropyl-beta-cyclodextrin extraction, polymeric TENAX beads extraction, and poly(dimethylsiloxane)-coated solid-phase microextraction. It should be noted that mild extraction methods may predict bioavailability at the moment when measurements are carried out, but not the changes in bioavailability that may occur over time. Simulation models are needed to estimate better bioavailability as a function of exposure time. In the past, models have progressed significantly by addressing each group of organisms separately: microbial degradation, plant uptake via evapotranspiration processes, and uptake of soil fauna in their habitat. This approach has been used primarily because of wide differences in the physiology and behaviors of such disparate organisms. However, improvement of models is badly needed, Particularly to describe uptake processes by plant and animals that impinge on bioavailability. Although models are required to describe all important factors that may affect chemical bioavailability to individual organisms over time (e.g., sorption/desorption to soil/sediment, volatilization, dissolution, aging, "bound residue" formation, biodegradation, etc.), these models should be simplified, when possible, to limit the number of parameters to the practical minimum. Although significant scientific progress has been made in understanding the complexities in specific methodologies dedicated to determining bioavailability, no method has yet emerged to characterized bioavailability across a wide range of chemicals, organisms, and soils/sediments. The primary aim in studying bioavailability is to define options for addressing bioremediation or environmental toxicity (risk assessment), and that is unlikely to change. Because of its importance in estimating research is needed to more comprehensively address the key environmental issue of "bioavailability of chemicals in soil/sediment."

HONO fluxes from soil surfaces: an overview

NASA Astrophysics Data System (ADS)

Wu, Dianming; Sörgel, Matthias; Tamm, Alexandra; Ruckteschler, Nina; Rodriguez-Caballero, Emilio; Cheng, Yafang; Pöschl, Ulrich; Weber, Bettina

2016-04-01

Gaseous nitrous acid (HONO) contributes up to 80% of atmospheric hydroxyl (OH) radicals and is also linked to health risks through reactions with tobacco smoke forming carcinogens. Field and modeling results suggested a large unknown HONO source in the troposphere during daytime. By measuring near ground HONO mixing ratio, up to 30% of HONO can be released from forest, rural and urban ground as well as snow surfaces. This source has been proposed to heterogeneous reactions of nitrogen dioxide (NO2) on humic acid surfaces or nitric acid photolysis. Laboratory studies showed that HONO emissions from bulk soil samples can reach 258 ng m-2 s-1 (in term of nitrogen), which corresponding to 1.1 × 1012 molecules cm-2 s-1and ˜ 100 times higher than most of the field studies, as measured by a dynamic chamber system. The potential mechanisms for soil HONO emissions include chemical equilibrium of acid-base reaction and gas-liquid partitioning between soil nitrite and HONO, but the positive correlation of HONO fluxes with pH (largest at neutral and slightly alkaline) points to the dominance of the formation process by ammonia-oxidizing bacteria (AOB). In general soil surface acidity, nitrite concentration and abundance of ammonia-oxidizing bacteria mainly regulate the HONO release from soil. A recent study showed that biological soil crusts in drylands can also emit large quantities of HONO and NO, corresponding to ˜20% of global nitrogen oxide emissions from soils under natural vegetation. Due to large concentrations of microorganisms in biological soil crusts, particularly high HONO and NO emissions were measured after wetting events. Considering large areas of arid and arable lands as well as peatlands, up to 70% of global soils are able to emitting HONO. However, the discrepancy between large soil HONO emissions measured in lab and low contributions of HONO flux from ground surfaces in field as well as the role of microorganisms should be further investigated.

Landscape-Scale Soil Carbon Inventories by Microclimate Decomposition

NASA Astrophysics Data System (ADS)

Beaudette, D. E.; O'Geen, A. T.

2008-12-01

Estimation of carbon stocks in rangeland and foothill ecosystems is poised to become an important service once legislation regulating greenhouse gas emissions is passed. Trading of carbon credits and greenhouse gas emission/sequestration budgets for vegetated areas is largely dependent on an accurate and scale- dependent inventory of existing conditions. Soil survey presents one possible resource for surface carbon stocks, however these data are usually not mapped at the landscape-scale. Soil-landscape modeling techniques have been successfully used in several instances to predict the spatial variation in soil carbon. Most of these studies have used site exposure (aspect angle) as a categorical proxy for terrain-induced microclimate. Our objective was to model parameters related to soil microclimate (soil temperature and moisture) for the production of detailed maps of soil carbon and organic matter quality (i.e. C:N ratio). We used a solar radiation model and long-term monitoring of soil moisture and temperature to generate several models of soil microclimate. Parameterization of the ESRA (European Solar Radiation Atlas) solar radiation model (clear-sky version) was accomplished with daily estimates of the Linke turbidity factor, using local pyranometer measurements (11 year record). Our estimated daily radiance values correlated well with local weather station data (R2 = 0.965, p < 0.001). This model is included in the popular, open source GRASS GIS. A preliminary study based on 35 sites, spanning two contrasting landform types (and lithology), revealed a statistically significant relationship between annual radiation load and carbon (R2 = 0.75, p < 0.001). A highly significant relationship between C:N ratio and annual radiation load was identified as well (R2 = 0.99, p < 0.001). Solar radiation models are simple to use, and have the potential to refine previous soil-landscape modeling efforts that relied on aspect class or angle. Models linking surface processes with microclimate can be used to directly generate estimates of carbon, or used to down-scale soil survey-based estimates.

Carbon flux from plants to soil microbes is highly sensitive to nitrogen addition and biochar amendment

NASA Astrophysics Data System (ADS)

Kaiser, C.; Solaiman, Z. M.; Kilburn, M. R.; Clode, P. L.; Fuchslueger, L.; Koranda, M.; Murphy, D. V.

2012-04-01

The release of carbon through plant roots to the soil has been recognized as a governing factor for soil microbial community composition and decomposition processes, constituting an important control for ecosystem biogeochemical cycles. Moreover, there is increasing awareness that the flux of recently assimilated carbon from plants to the soil may regulate ecosystem response to environmental change, as the rate of the plant-soil carbon transfer will likely be affected by increased plant C assimilation caused by increasing atmospheric CO2 levels. What has received less attention so far is how sensitive the plant-soil C transfer would be to possible regulations coming from belowground, such as soil N addition or microbial community changes resulting from anthropogenic inputs such as biochar amendments. In this study we investigated the size, rate and sensitivity of the transfer of recently assimilated plant C through the root-soil-mycorrhiza-microbial continuum. Wheat plants associated with arbuscular mycorrhizal fungi were grown in split-boxes which were filled either with soil or a soil-biochar mixture. Each split-box consisted of two compartments separated by a membrane which was penetrable for mycorrhizal hyphae but not for roots. Wheat plants were only grown in one compartment while the other compartment served as an extended soil volume which was only accessible by mycorrhizal hyphae associated with the plant roots. After plants were grown for four weeks we used a double-labeling approach with 13C and 15N in order to investigate interactions between C and N flows in the plant-soil-microorganism system. Plants were subjected to an enriched 13CO2 atmosphere for 8 hours during which 15NH4 was added to a subset of split-boxes to either the root-containing or the root-free compartment. Both, 13C and 15N fluxes through the plant-soil continuum were monitored over 24 hours by stable isotope methods (13C phospho-lipid fatty acids by GC-IRMS, 15N/13C in bulk plant material, microbial biomass and dissolved organic matter by IRMS, 13C and 15N in plant roots cells and intraradical mycorrhizal hyphae by NanoSims). Our results show that (1) C assimilated by plants was delivered within 4 hours to the soil microbial community both via roots and the mycorrhizal network (2) N addition during the labeling period strongly and rapidly increased the 13C flux of recently assimilated carbohydrates to the soil microbial biomass (3) the effect of N addition was not as rapid but was of the same magnitude when N was delivered to the plant exclusively by mycorrhizal hyphae as compared to taken up by roots (4) soils which had been amended with biochar (which were characterized by an increased abundance of mycorrhizal fungi) also showed a significant increase of C flux from plants to the soil. We conclude that plant belowground C allocation is highly sensitive to alterations of microbial community structure and nutritional status in the soil. Moreover, our results indicate that plants respond rapidly (within hours) to changing soil N availability by altering the rate of C transported belowground. Our results emphasise the ecological significance of plant-belowground interactions for ecosystem C cycling.

Soil microbial community response to precipitation change in a semi-arid ecosystem

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cregger, Melissa; Schadt, Christopher Warren; McDowell, Nathan

2012-01-01

Microbial communities regulate many belowground carbon cycling processes; thus, the impact of climate change on the struc- ture and function of soil microbial communities could, in turn, impact the release or storage of carbon in soils. Here we used a large-scale precipitation manipulation ( 18%, 50%, or ambient) in a pi on-juniper woodland (Pinus edulis-Juniperus mono- sperma) to investigate how changes in precipitation amounts altered soil microbial communities as well as what role seasonal variation in rainfall and plant composition played in the microbial community response. Seasonal variability in precipitation had a larger role in determining the composition of soilmore » microbial communities in 2008 than the direct effect of the experimental precipitation treatments. Bacterial and fungal communities in the dry, relatively moisture-limited premonsoon season were compositionally distinct from communities in the monsoon season, when soil moisture levels and periodicity varied more widely across treatments. Fungal abundance in the drought plots during the dry premonsoon season was particularly low and was 4.7 times greater upon soil wet-up in the monsoon season, suggesting that soil fungi were water limited in the driest plots, which may result in a decrease in fungal degradation of carbon substrates. Additionally, we found that both bacterial and fungal communities beneath pi on pine and juniper were distinct, suggesting that microbial functions beneath these trees are different. We conclude that predicting the response of microbial communities to climate change is highly dependent on seasonal dynam- ics, background climatic variability, and the composition of the associated aboveground community.« less

Merging a mechanistic enzymatic model of soil heterotrophic respiration into an ecosystem model in two AmeriFlux sites of northeastern USA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sihi, Debjani; Davidson, Eric A.; Chen, Min

Heterotrophic respiration (Rh), microbial processing of soil organic matter to carbon dioxide (CO 2), is a major, yet highly uncertain, carbon (C) flux from terrestrial systems to the atmosphere. Temperature sensitivity of Rh is often represented with a simple Q 10 function in ecosystem models and earth system models (ESMs), sometimes accompanied by an empirical soil moisture modifier. More explicit representation of the effects of soil moisture, substrate supply, and their interactions with temperature has been proposed as a way to disentangle the confounding factors of apparent temperature sensitivity of Rh and improve the performance of ecosystem models and ESMs.more » The objective of this work was to insert into an ecosystem model a more mechanistic, but still parsimonious, model of environmental factors controlling Rh and evaluate the model performance in terms of soil and ecosystem respiration. The Dual Arrhenius and Michaelis-Menten (DAMM) model simulates Rh using Michaelis-Menten, Arrhenius, and diffusion functions. Soil moisture affects Rh and its apparent temperature sensitivity in DAMM by regulating the diffusion of oxygen, soluble C substrates, and extracellular enzymes to the enzymatic reaction site. Here, we merged the DAMM soil flux model with a parsimonious ecosystem flux model, FöBAAR (Forest Biomass, Assimilation, Allocation and Respiration). We used high-frequency soil flux data from automated soil chambers and landscape-scale ecosystem fluxes from eddy covariance towers at two AmeriFlux sites (Harvard Forest, MA and Howland Forest, ME) in the northeastern USA to estimate parameters, validate the merged model, and to quantify the uncertainties in a multiple constraints approach. The optimized DAMM-FöBAAR model better captured the seasonal and inter-annual dynamics of soil respiration (Soil R) compared to the FöBAAR-only model for the Harvard Forest, where higher frequency and duration of drying events significantly regulate substrate supply to heterotrophs. However, DAMM-FöBAAR showed improvement over FöBAAR-only at the boreal transition Howland Forest only in unusually dry years. The frequency of synoptic-scale dry periods is lower at Howland, resulting in only brief water limitation of Rh in some years. At both sites, the declining trend of soil R during drying events was captured by the DAMM-FöBAAR model; however, model performance was also contingent on site conditions, climate, and the temporal scale of interest. While the DAMM functions require a few more parameters than a simple Q10 function, we have demonstrated that they can be included in an ecosystem model and reduce the model-data mismatch. Moreover, the mechanistic structure of the soil moisture effects using DAMM functions should be more generalizable than the wide variety of empirical functions that are commonly used, and these DAMM functions could be readily incorporated into other ecosystem models and ESMs.« less

The relationship between historical development and potentially toxic element concentrations in urban soils.

PubMed

McIlwaine, Rebekka; Doherty, Rory; Cox, Siobhan F; Cave, Mark

2017-01-01

Increasing urbanisation has a direct impact on soil quality, resulting in elevated concentrations of potentially toxic elements (PTEs) in soils. This research aims to assess if soil PTE concentrations can be used as an 'urbanisation tracer' by investigating geogenic and anthropogenic source contributions and controls, and considering PTE enrichment across historical urban development zones. The UK cities of Belfast and Sheffield are chosen as study areas, where available shallow and deep concentrations of PTEs in soil are compared to identify geogenic and anthropogenic contributions to PTEs. Cluster analysis and principal component analysis are used to elucidate the main controls over PTE concentrations. Pollution indices indicate that different periods of historical development are linked to enrichment of different PTEs. Urban subdomains are identified and background values calculated using various methodologies and compared to generic site assessment criteria. Exceedances for a number of the PTEs considered suggest a potential human health risk could be posed across subdomains of both Belfast and Sheffield. This research suggests that airborne diffuse contamination from often historical sources such as traffic, domestic combustion and industrial processes contribute greatly to soil contamination within urban environments. The relationship between historical development and differing PTEs is a novel finding, suggesting that PTEs have the potential for use as 'urbanisation tracers'. The investigative methodology employed has potential applications for decision makers, urban planners, regulators and developers of urban areas. Copyright © 2016 Elsevier Ltd. All rights reserved.

Taxonomic and Functional Responses of Soil Microbial Communities to Annual Removal of Aboveground Plant Biomass

PubMed Central

Guo, Xue; Zhou, Xishu; Hale, Lauren; Yuan, Mengting; Feng, Jiajie; Ning, Daliang; Shi, Zhou; Qin, Yujia; Liu, Feifei; Wu, Liyou; He, Zhili; Van Nostrand, Joy D.; Liu, Xueduan; Luo, Yiqi; Tiedje, James M.; Zhou, Jizhong

2018-01-01

Clipping, removal of aboveground plant biomass, is an important issue in grassland ecology. However, few studies have focused on the effect of clipping on belowground microbial communities. Using integrated metagenomic technologies, we examined the taxonomic and functional responses of soil microbial communities to annual clipping (2010–2014) in a grassland ecosystem of the Great Plains of North America. Our results indicated that clipping significantly (P < 0.05) increased root and microbial respiration rates. Annual temporal variation within the microbial communities was much greater than the significant changes introduced by clipping, but cumulative effects of clipping were still observed in the long-term scale. The abundances of some bacterial and fungal lineages including Actinobacteria and Bacteroidetes were significantly (P < 0.05) changed by clipping. Clipping significantly (P < 0.05) increased the abundances of labile carbon (C) degrading genes. More importantly, the abundances of recalcitrant C degrading genes were consistently and significantly (P < 0.05) increased by clipping in the last 2 years, which could accelerate recalcitrant C degradation and weaken long-term soil carbon stability. Furthermore, genes involved in nutrient-cycling processes including nitrogen cycling and phosphorus utilization were also significantly increased by clipping. The shifts of microbial communities were significantly correlated with soil respiration and plant productivity. Intriguingly, clipping effects on microbial function may be highly regulated by precipitation at the interannual scale. Altogether, our results illustrated the potential of soil microbial communities for increased soil organic matter decomposition under clipping land-use practices. PMID:29904372

Nitrogen and phosphorus addition impact soil N2O emission in a secondary tropical forest of South China

PubMed Central

Wang, Faming; Li, Jian; Wang, Xiaoli; Zhang, Wei; Zou, Bi; Neher, Deborah A.; Li, Zhian

2014-01-01

Nutrient availability greatly regulates ecosystem processes and functions of tropical forests. However, few studies have explored impacts of N addition (aN), P addition (aP) and N×P interaction on tropical forests N2O fluxes. We established an N and P addition experiment in a tropical forest to test whether: (1) N addition would increase N2O emission and nitrification, and (2) P addition would increase N2O emission and N transformations. Nitrogen and P addition had no effect on N mineralization and nitrification. Soil microbial biomass was increased following P addition in wet seasons. aN increased 39% N2O emission as compared to control (43.3 μgN2O-N m−2h−1). aP did not increase N2O emission. Overall, N2O emission was 60% greater for aNP relative to the control, but significant difference was observed only in wet seasons, when N2O emission was 78% greater for aNP relative to the control. Our results suggested that increasing N deposition will enhance soil N2O emission, and there would be N×P interaction on N2O emission in wet seasons. Given elevated N deposition in future, P addition in this tropical soil will stimulate soil microbial activities in wet seasons, which will further enhance soil N2O emission. PMID:25001013

Suppression of soil nitrification by plants.

PubMed

Subbarao, Guntur Venkata; Yoshihashi, Tadashi; Worthington, Margaret; Nakahara, Kazuhiko; Ando, Yasuo; Sahrawat, Kanwar Lal; Rao, Idupulapati Madhusudhana; Lata, Jean-Christophe; Kishii, Masahiro; Braun, Hans-Joachim

2015-04-01

Nitrification, the biological oxidation of ammonium to nitrate, weakens the soil's ability to retain N and facilitates N-losses from production agriculture through nitrate-leaching and denitrification. This process has a profound influence on what form of mineral-N is absorbed, used by plants, and retained in the soil, or lost to the environment, which in turn affects N-cycling, N-use efficiency (NUE) and ecosystem health and services. As reactive-N is often the most limiting in natural ecosystems, plants have acquired a range of mechanisms that suppress soil-nitrifier activity to limit N-losses via N-leaching and denitrification. Plants' ability to produce and release nitrification inhibitors from roots and suppress soil-nitrifier activity is termed 'biological nitrification inhibition' (BNI). With recent developments in methodology for in-situ measurement of nitrification inhibition, it is now possible to characterize BNI function in plants. This review assesses the current status of our understanding of the production and release of biological nitrification inhibitors (BNIs) and their potential in improving NUE in agriculture. A suite of genetic, soil and environmental factors regulate BNI activity in plants. BNI-function can be genetically exploited to improve the BNI-capacity of major food- and feed-crops to develop next-generation production systems with reduced nitrification and N2O emission rates to benefit both agriculture and the environment. The feasibility of such an approach is discussed based on the progresses made. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Regulated deficit irrigation can decrease soil CO2 emissions in fruit orchards

NASA Astrophysics Data System (ADS)

Zornoza, Raul; Acosta, José Alberto; Martínez-Martínez, Silvia; De la Rosa, Jose M.°; Faz, Angel; Pérez-Pastor, Alejandro

2016-04-01

Irrigation water restrictions in the Mediterranean area have created a growing interest in water conservation. Apart from environmental and economic benefits by water savings, regulated deficit irrigation (RDI) may contribute to reduce soil CO2 emissions and enhance C sequestration in soils, by decreasing microbial and root activity in response to decreased soil moisture levels. An experiment was established in four orchards (peach, apricot, Saturn peach and grape) to investigate the effects of regulated deficit irrigation (RDI) on soil CO2 emissions. Two irrigation treatments were assayed: full irrigation (FI), and RDI, irrigated as FI except for postharvest period (peach, apricot, Saturn peach) or post-veraison period (grape) were 50% of FI was applied. The application of deficit caused a significant decrease in CO2 emission rates, with rates in average of 90 mg CO2-C m-2 h-1, 120 mg CO2-C m-2 h-1, 60 mg CO2-C m-2 h-1 and 60 mg CO2-C m-2 h-1 lower than FI during the period when deficit was applied for peach, apricot, Saturn peach and grape. This confirms the high effectiveness of the RDI strategies not only to save water consumption but also to decrease soil CO2 emissions. However, monitoring during longer periods is needed to verify that this trend is long-term maintained, and assess if soil carbon stocks are increase or most CO2 emissions derive from root respiration. Acknowledgements This work has been funded by the European Union LIFE+ project IRRIMAN (LIFE13 ENV/ES/000539).

Thickness of Weathering Profiles:Relaying Tectonic Signal to Biogeochemical Cycles

NASA Astrophysics Data System (ADS)

Yoo, K.; Weinman, B. A.; Hurst, M. D.; Mudd, S. M.; Gabet, E. J.; Attal, M.; Maher, K.

2011-12-01

Generation and transport of sediment across hillslopes and rivers are closely tied to mechanisms that produce and remove weathered material; in uplands this production and transport controls the thicknesses of weathering profiles. These processes, by controlling the residence time of minerals in the weathering profiles, further regulate the interactions between these minerals and largely biologically cycled elements like carbon and calcium. Here, we present and discuss the thicknesses of colluvial soils and underlying saprolites along three hillslopes that are subject to different rates of basal channel incision. Our field site is within a tributary basin to the Middle Folk Feather River in the Northern Sierra Nevada of California where the river has been down cutting through an uplifting granitic batholith over the past five to ten million years. Conventional modeling predicts that colluvial soil thickness declines with increasing denudation rates. Contrary to this expectation, intensive measurements of colluvial soil thickness show largely consistent values across the three hillslopes examined. This finding, in combination with the abrupt transitions to partial or full bare-rock landscapes with further increase in slope curvature or greater proximity to the Middle Folk Feather River, suggests that the mechanisms of soil production are capable of keeping pace with physical erosion rate until a certain threshold erosion rate is reached. We observe, however, that thicknesses of the underlying saprolite and the morphology (eg., color and texture) and geochemistry (eg., elemental concentration and extraction chemistry of iron) of both colluvial soil and saprolite materials vary systematically with the total denudation rates. This finding further allows us to build a simple relationship to describe and predict how the changes in erosion rates translate to the soils' capacity to store biologically cycled elements within rooting depths. Therefore, geomorphic and geochemical processes that control the thicknesses of weathering profiles, by determining their turn over time as well, relay the tectonic signal to the cycles of biologically relevant elements.

Human-induced geomorphic change across environmental gradients

NASA Astrophysics Data System (ADS)

Vanacker, V.; Molina, A.; Bellin, N.; Christl, M.

2016-12-01

Human-induced land cover changes are causing important adverse effects on the ecological services rendered by mountain ecosystems, and the number of case-studies of the impact of humans on soil erosion and sediment yield has mounted rapidly. Anthropogenic disturbance of natural vegetation can profoundly alter the physical, chemical and biological processes within soils. Rapid removal of topsoil during intense farming can result in an imbalance between soil production through chemical weathering and physical soil erosion, with direct implications on nutrient cycling, soil fertility and agricultural production. In this study, we present a conceptual model for assessing human-induced erosion for a wide variety of environmental settings and pose that human-induced geomorphic change cannot be assessed solely based on modern erosion rates as natural or baseline erosion rates can be important in e.g. mountainous terrain. As such, we assess the vulnerability of a given ecosystem to human-induced land cover change by quantifying the change in catchment-wide erosion rates resulting from anthropogenic changes in vegetation cover. Human-induced erosion is here approximated by the ratio of the total specific sediment yield to the natural erosional mass flux, and is dimensionless. The conceptual model is applied to three contrasting environmental settings where data on soil production, physical soil erosion and long-term denudation are available: the tropical Andes, subtropical southern Brazil, and semi-arid Spanish Cordillera. The magnitude of human-induced geomorphic change strongly differs between the three regions. The data suggest that the sensitivity to human-induced erosion is ecosystem dependent, and related to soil erosivity and potential vegetation cover disturbances as a result of human impact. It may therefore be expected that the potential for erosion regulation is larger in well-vegetated ecosystem where strong differences may exist in vegetation cover between human disturbed and undisturbed or restored sites.

Plants Regulate Soil Organic Matter Decomposition in Response to Sea Level Rise

NASA Astrophysics Data System (ADS)

Megonigal, P.; Mueller, P.; Jensen, K.

2014-12-01

Tidal wetlands have a large capacity for producing and storing organic matter, making their role in the global carbon budget disproportionate to their land area. Most of the organic matter stored in these systems is in soils where it contributes 2-5 times more to surface accretion than an equal mass of minerals. Soil organic matter (SOM) sequestration is the primary process by which tidal wetlands become perched high in the tidal frame, decreasing their vulnerability to accelerated sea level rise. Plant growth responses to sea level rise are well understood and represented in century-scale forecast models of soil surface elevation change. We understand far less about the response of soil organic matter decomposition to rapid sea level rise. Here we quantified the effects of sea level on SOM decomposition rates by exposing planted and unplanted tidal marsh monoliths to experimentally manipulated flood duration. The study was performed in a field-based mesocosm facility at the Smithsonian's Global Change Research Wetland. SOM decomposition rate was quantified as CO2 efflux, with plant- and SOM-derived CO2 separated with a two end-member δ13C-CO2 model. Despite the dogma that decomposition rates are inversely related to flooding, SOM mineralization was not sensitive to flood duration over a 35 cm range in soil surface elevation. However, decomposition rates were strongly and positively related to aboveground biomass (R2≥0.59, p≤0.01). We conclude that soil carbon loss through decomposition is driven by plant responses to sea level in this intensively studied tidal marsh. If this result applies more generally to tidal wetlands, it has important implications for modeling soil organic matter and surface elevation change in response to accelerated sea level rise.

Distribution and speciation of ambient selenium in contrasted soils, from mineral to organic rich.

PubMed

Tolu, Julie; Thiry, Yves; Bueno, Maïté; Jolivet, Claudy; Potin-Gautier, Martine; Le Hécho, Isabelle

2014-05-01

Selenium adsorption onto oxy-hydroxides mainly controls its mobility in volcanic soils, red earths and soils poor in organic matter (OM) while the influence of OM was emphasized in podzol and peat soils. This work aims at deciphering how those solid phases influence ambient Se mobility and speciation under less contrasted conditions in 26 soils spanning extensive ranges of OM (1-32%), Fe/Al oxy-hydroxides (0.3-6.1%) contents and pH (4.0-8.3). The soil collection included agriculture, meadow and forest soils to assess the influence of OM quality as well. Trace concentrations of six ambient Se species (Se(IV), Se(VI) and 4 organo-Se compounds) were analyzed by HPLC-ICP-MS in three extractants (ultrapure water, phosphate and sodium hydroxide) targeting Se associated to different soil phases. The Kd values determined from ultrapure water extraction were higher than those reported in commonly used short-term experiments after Se-spiking. Correlations of ambient Se content and distribution with soil parameters explained this difference by an involvement of slow processes in Se retention in soils. The 26 Kd values determined here for a wide variety of soils thus represent a relevant database for long-term prediction of Se mobility. For soils containing less than 20% OM, ambient Se solubility is primarily controlled by its adsorption onto crystalline oxy-hydroxides. However, OM plays an important role in Se mobility by forming organo-mineral associations that may protect adsorbed Se from leaching and/or create anoxic zones (aggregates) where Se is immobilized after its reduction. Although for the first time, inorganic Se(IV), Se(VI) and organo-Se compounds were simultaneously investigated in a large soil collection, high Se proportions remain unidentified in each soil extract, most probably due to Se incorporation and/or binding to colloidal-sized OM. Variations of environmental factors regulating the extent of OM-mineral associations/aggregation may thus lead to changes in Se mobility and bio-availability. Copyright © 2014 Elsevier B.V. All rights reserved.

Hydrologically transported dissolved organic carbon influences soil respiration in a tropical rainforest

NASA Astrophysics Data System (ADS)

Zhou, Wen-Jun; Lu, Hua-Zheng; Zhang, Yi-Ping; Sha, Li-Qing; Schaefer, Douglas Allen; Song, Qing-Hai; Deng, Yun; Deng, Xiao-Bao

2016-10-01

To better understand the effect of dissolved organic carbon (DOC) transported by hydrological processes (rainfall, throughfall, litter leachate, and surface soil water; 0-20 cm) on soil respiration in tropical rainforests, we detected the DOC flux in rainfall, throughfall, litter leachate, and surface soil water (0-20 cm), compared the seasonality of δ13CDOC in each hydrological process, and δ13C in leaves, litter, and surface soil, and analysed the throughfall, litter leachate, and surface soil water (0-20 cm) effect on soil respiration in a tropical rainforest in Xishuangbanna, south-west China. Results showed that the surface soil intercepted 94.4 ± 1.2 % of the annual litter leachate DOC flux and is a sink for DOC. The throughfall and litter leachate DOC fluxes amounted to 6.81 and 7.23 % of the net ecosystem exchange respectively, indicating that the DOC flux through hydrological processes is an important component of the carbon budget, and may be an important link between hydrological processes and soil respiration in a tropical rainforest. Even the variability in soil respiration is more dependent on the hydrologically transported water than DOC flux insignificantly, soil temperature, and soil-water content (at 0-20 cm). The difference in δ13C between the soil, soil water (at 0-20 cm), throughfall, and litter leachate indicated that DOC is transformed in the surface soil and decreased the sensitivity indices of soil respiration of DOC flux to water flux, which suggests that soil respiration is more sensitive to the DOC flux in hydrological processes, especially the soil-water DOC flux, than to soil temperature or soil moisture.

Soil processes at Emerald Lake Watershed. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lund, L.J.; Brown, A.D.; Lueking, M.A.

1987-04-20

The objectives of the Soils Processes research at Emerald Lake Watershed (ELW) were to assess physical, chemical and biological processes contributing to the production or consumption of acidity in soils and to assess the net effect of soil processes on surface-water quality in an alpine watershed. Most of the N and S in ELW soils is stored in organic forms. Most of the soil P is present in nearly insoluble mineral forms. The ELW soils can adsorb only small quantities of sulfate, thus their capacity for buffering acid additions by sulfate adsorption is low. Concentrations of Al, Ca, Mg, K,more » and Na in both soil solution and stream samples reflected patterns of mineral weathering in the watershed. Summer CO/sub 2/ concentrations in the soils were high enough to increase soil solution acidity and influence the speciation of dissolved elements. The overall chemistry of stream waters reflects the mineral composition of soils and rocks at ELW.« less

Design, construction, operation, and evaluation of solar systems for industrial process-heat applications in the intermediate-temperature range (212/sup 0/F to 550/sup 0/F). Environmental assessment

DOE Office of Scientific and Technical Information (OSTI.GOV)

None

1982-01-01

The environmental impacts are assessed for a proposed 50,000 square foot field of single axis tracking, concentrating solar collectors along the Ohio River in southern Ohio. The facility is planned to produce process steam for use in the production of polystyrene. Absorbed solar energy would heat an aliphatic hydrocarbon synthetic heat transfer fluid to a maximum temperature of 500/sup 0/F. The existing environment is briefly described, particularly regarding air quality. The potential environmental impacts of the solar process heat system on the air, water, soil, endangered species and archaeological and historical resources are examined, including risks due to flood andmore » glare and a comparison of alternatives. Also included are a Consent Judgment relating to two coal-fired boilers in violation of EPA regulations, property data of Gulf Synfluid 4CS (a candidate heat transfer fluid), piping and instrumentation diagrams and schematics, site grade and drainage plan, geological survey map, subsurface soil investigation, Ohio endangered species list, Ohio Archaeological Counsel certification list, and a study of heat transfer fluids and their properties. (LEW)« less

Soil functional zone management: a vehicle for enhancing production and soil ecosystem services in row-crop agroecosystems

USDA-ARS?s Scientific Manuscript database

There is increasing demand for food, bioenergy feedstocks and a wide variety of bio-based products. In response, agriculture has made great gains in production, but is increasingly depleting soil regulating and supporting ecosystem services. New production systems have emerged, such as Conservation ...

Emission and distribution of fumigants as affected by soil moistures in three different textured soils

USDA-ARS?s Scientific Manuscript database

Stringent environmental regulations are being developed to control the emission of soil fumigants to reduce air pollution. Water application is a low-cost strategy for fumigant emission control and applicable for a wide range of commodity groups, especially those with low profit margins. Although it...

Strigolactones are a new-defined class of plant hormones which inhibit shoot branching and mediate the interaction of plant-AM fungi and plant-parasitic weeds.

PubMed

Chen, Caiyan; Zou, Junhuang; Zhang, Shuying; Zaitlin, David; Zhu, Lihuang

2009-08-01

Because plants are sessile organisms, the ability to adapt to a wide range of environmental conditions is critical for their survival. As a consequence, plants use hormones to regulate growth, mitigate biotic and abiotic stresses, and to communicate with other organisms. Many plant hormones function pleiotropically in vivo, and often work in tandem with other hormones that are chemically distinct. A newly-defined class of plant hormones, the strigolactones, cooperate with auxins and cytokinins to control shoot branching and the outgrowth of lateral buds. Strigolactones were originally identified as compounds that stimulated the germination of parasitic plant seeds, and were also demonstrated to induce hyphal branching in arbuscular mycorrhizal (AM) fungi. AM fungi form symbioses with higher plant roots and mainly facilitate the absorption of phosphate from the soil. Conforming to the classical definition of a plant hormone, strigolactones are produced in the roots and translocated to the shoots where they inhibit shoot outgrowth and branching. The biosynthesis of this class of compounds is regulated by soil nutrient availability, i.e. the plant will increase its production of strigolactones when the soil phosphate concentration is limited, and decrease production when phosphates are in ample supply. Strigolactones that affect plant shoot branching, AM fungal hyphal branching, and seed germination in parasitic plants facilitate chemical synthesis of similar compounds to control these and other biological processes by exogenous application.

On the Need to Establish an International Soil Modeling Consortium

NASA Astrophysics Data System (ADS)

Vereecken, H.; Vanderborght, J.; Schnepf, A.

2014-12-01

Soil is one of the most critical life-supporting compartments of the Biosphere. Soil provides numerous ecosystem services such as a habitat for biodiversity, water and nutrients, as well as producing food, feed, fiber and energy. To feed the rapidly growing world population in 2050, agricultural food production must be doubled using the same land resources footprint. At the same time, soil resources are threatened due to improper management and climate change. Despite the many important functions of soil, many fundamental knowledge gaps remain, regarding the role of soil biota and biodiversity on ecosystem services, the structure and dynamics of soil communities, the interplay between hydrologic and biotic processes, the quantification of soil biogeochemical processes and soil structural processes, the resilience and recovery of soils from stress, as well as the prediction of soil development and the evolution of soils in the landscape, to name a few. Soil models have long played an important role in quantifying and predicting soil processes and related ecosystem services. However, a new generation of soil models based on a whole systems approach comprising all physical, mechanical, chemical and biological processes is now required to address these critical knowledge gaps and thus contribute to the preservation of ecosystem services, improve our understanding of climate-change-feedback processes, bridge basic soil science research and management, and facilitate the communication between science and society. To meet these challenges an international community effort is required, similar to initiatives in systems biology, hydrology, and climate and crop research. Our consortium will bring together modelers and experimental soil scientists at the forefront of new technologies and approaches to characterize soils. By addressing these aims, the consortium will contribute to improve the role of soil modeling as a knowledge dissemination instrument in addressing key global issues and stimulate the development of translational research activities. This presentation will provide a compelling case for this much-needed effort, with a focus on tangible benefits to the scientific and food security communities.

A dynamic model of soil salinity and drainage generation in irrigated agriculture: A framework for policy analysis

NASA Astrophysics Data System (ADS)

Dinar, Ariel; Aillery, Marcel P.; Moore, Michael R.

1993-06-01

This paper presents a dynamic model of irrigated agriculture that accounts for drainage generation and salinity accumulation. Critical model relationships involving crop production, soil salinity, and irrigation drainage are based on newly estimated functions derived from lysimeter field tests. The model allocates land and water inputs over time based on an intertemporal profit maximization objective function and soil salinity accumulation process. The model is applied to conditions in the San Joaquin Valley of California, where environmental degradation from irrigation drainage has become a policy issue. Findings indicate that in the absence of regulation, drainage volumes increase over time before reaching a steady state as increased quantities of water are allocated to leaching soil salts. The model is used to evaluate alternative drainage abatement scenarios involving drainage quotas and taxes, water supply quotas and taxes, and irrigation technology subsidies. In our example, direct drainage policies are more cost-effective in reducing drainage than policies operating indirectly through surface water use, although differences in cost efficiency are relatively small. In some cases, efforts to control drainage may result in increased soil salinity accumulation, with implications for long-term cropland productivity. While policy adjustments may alter the direction and duration of convergence to a steady state, findings suggest that a dynamic model specification may not be necessary due to rapid convergence to a comon steady state under selected scenarios.

An obligately aerobic soil bacterium activates fermentative hydrogen production to survive reductive stress during hypoxia.

PubMed

Berney, Michael; Greening, Chris; Conrad, Ralf; Jacobs, William R; Cook, Gregory M

2014-08-05

Oxygen availability is a major factor and evolutionary force determining the metabolic strategy of bacteria colonizing an environmental niche. In the soil, conditions can switch rapidly between oxia and anoxia, forcing soil bacteria to remodel their energy metabolism accordingly. Mycobacterium is a dominant genus in the soil, and all its species are obligate aerobes. Here we show that an obligate aerobe, the soil actinomycete Mycobacterium smegmatis, adopts an anaerobe-type strategy by activating fermentative hydrogen production to adapt to hypoxia. This process is controlled by the two-component system DosR-DosS/DosT, an oxygen and redox sensor that is well conserved in mycobacteria. We show that DosR tightly regulates the two [NiFe]-hydrogenases: Hyd3 (MSMEG_3931-3928) and Hyd2 (MSMEG_2719-2718). Using genetic manipulation and high-sensitivity GC, we demonstrate that Hyd3 facilitates the evolution of H2 when oxygen is depleted. Combined activity of Hyd2 and Hyd3 was necessary to maintain an optimal NAD(+)/NADH ratio and enhanced adaptation to and survival of hypoxia. We demonstrate that fermentatively-produced hydrogen can be recycled when fumarate or oxygen become available, suggesting Mycobacterium smegmatis can switch between fermentation, anaerobic respiration, and aerobic respiration. Hydrogen metabolism enables this obligate aerobe to rapidly meet its energetic needs when switching between microoxic and anoxic conditions and provides a competitive advantage in low oxygen environments.

High resolution regional soil carbon mapping in Madagascar : towards easy to update maps

NASA Astrophysics Data System (ADS)

Grinand, Clovis; Dessay, Nadine; Razafimbelo, Tantely; Razakamanarivo, Herintsitoaina; Albrecht, Alain; Vaudry, Romuald; Tiberghien, Matthieu; Rasamoelina, Maminiaina; Bernoux, Martial

2013-04-01

The soil organic carbon plays an important role in climate change regulation through carbon emissions and sequestration due to land use changes, notably tropical deforestation. Monitoring soil carbon emissions from shifting-cultivation requires to evaluate the amount of carbon stored at plot scale with a sufficient level of accuracy to be able to detect changes. The objective of this work was to map soil carbon stocks (30 cm and 100 cm depths) for different land use at regional scale using high resolution satellite dataset. The Andohahela National Parc and its surroundings (South-Est Madagascar) - a region with the largest deforestation rate in the country - was selected as a pilot area for the development of the methodology. A three steps approach was set up: (i) carbon inventory using mid infra-red spectroscopy and stock calculation, (ii) spatial data processing and (iii) modeling and mapping. Soil spectroscopy was successfully used for measuring organic carbon in this region. The results show that Random Forest was the inference model that produced the best estimates on calibration and validation datasets. By using a simple and robust method, we estimated uncertainty levels of of 35% and 43% for 30-cm and 100-cm carbon maps respectively. The approach developed in this study was based on open data and open source software that can be easily replicated to other regions and for other time periods using updated satellite images.

Effects of elevated CO2 on fine root biomass are reduced by aridity but enhanced by soil nitrogen: A global assessment.

PubMed

Piñeiro, Juan; Ochoa-Hueso, Raúl; Delgado-Baquerizo, Manuel; Dobrick, Silvan; Reich, Peter B; Pendall, Elise; Power, Sally A

2017-11-10

Plant roots play a crucial role in regulating key ecosystem processes such as carbon (C) sequestration and nutrient solubilisation. Elevated (e)CO 2 is expected to alter the biomass of fine, coarse and total roots to meet increased demand for other resources such as water and nitrogen (N), however, the magnitude and direction of observed changes vary considerably between ecosystems. Here, we assessed how climate and soil properties mediate root responses to eCO 2 by comparing 24 field-based CO 2 experiments across the globe including a wide range of ecosystem types. We calculated response ratios (i.e. effect size) and used structural equation modelling (SEM) to achieve a system-level understanding of how aridity, mean annual temperature and total soil nitrogen simultaneously drive the response of total, coarse and fine root biomass to eCO 2 . Models indicated that increasing aridity limits the positive response of fine and total root biomass to eCO 2 , and that fine (but not coarse or total) root responses to eCO 2 are positively related to soil total N. Our results provide evidence that consideration of factors such as aridity and soil N status is crucial for predicting plant and ecosystem-scale responses to future changes in atmospheric CO 2 concentrations, and thus feedbacks to climate change.

Microbiology and Moisture Uptake of Desert Soils

NASA Astrophysics Data System (ADS)

Kress, M. E.; Bryant, E. P.; Morgan, S. W.; Rech, S.; McKay, C. P.

2005-12-01

We have initiated an interdisciplinary study of the microbiology and water content of desert soils to better understand microbial activity in extreme arid environments. Water is the one constituent that no organism can live without; nevertheless, there are places on Earth with an annual rainfall near zero that do support microbial ecosystems. These hyperarid deserts (e.g. Atacama and the Antarctic Dry Valleys) are the closest terrestrial analogs to Mars, which is the subject of future exploration motivated by the search for life beyond Earth. We are modeling the moisture uptake by soils in hyperarid environments to quantify the environmental constraints that regulate the survival and growth of micro-organisms. Together with the studies of moisture uptake, we are also characterizing the microbial population in these soils using molecular and culturing methods. We are in the process of extracting DNA from these soils using MoBio extraction kits. This DNA will be used as a template to amplify bacterial and eukaryotic ribosomal DNA to determine the diversity of the microbial population. We also have been attempting to determine the density of organisms by culturing on one-half strength R2A agar. The long-range goal of this research is to identify special adaptations of terrestrial life that allow them to inhabit extreme arid environments, while simultaneously quantifying the environmental parameters that enforce limits on these organisms' growth and survival.

A review on slurry bioreactors for bioremediation of soils and sediments.

PubMed

Robles-González, Ireri V; Fava, Fabio; Poggi-Varaldo, Héctor M

2008-02-29

The aim of this work is to present a critical review on slurry bioreactors (SB) and their application to bioremediation of soils and sediments polluted with recalcitrant and toxic compounds. The scope of the review encompasses the following subjects: (i) process fundamentals of SB and analysis of advantages and disadvantages; (ii) the most recent applications of SB to laboratory scale and commercial scale soil bioremediation, with a focus on pesticides, explosives, polynuclear aromatic hydrocarbons, and chlorinated organic pollutants; (iii) trends on the use of surfactants to improve availability of contaminants and supplementation with degradable carbon sources to enhance cometabolism of pollutants; (iv) recent findings on the utilization of electron acceptors other than oxygen; (v) bioaugmentation and advances made on characterization of microbial communities of SB; (vi) developments on ecotoxicity assays aimed at evaluating bioremediation efficiency of the process.From this review it can be concluded that SB is an effective ad situ and ex situ technology that can be used for bioremediation of problematic sites, such as those characterized by soils with high contents of clay and organic matter, by pollutants that are recalcitrant, toxic, and display hysteretic behavior, or when bioremediation should be accomplished in short times under the pressure and monitoring of environmental agencies and regulators. SB technology allows for the convenient manipulation and control of several environmental parameters that could lead to enhanced and faster treatment of polluted soils: nutrient N, P and organic carbon source (biostimulation), inocula (bioaugmentation), increased availability of pollutants by use of surfactants or inducing biosurfactant production inside the SB, etc. An interesting emerging area is the use of SB with simultaneous electron acceptors, which has demonstrated its usefulness for the bioremediation of soils polluted with hydrocarbons and some organochlorinated compounds. Characterization studies of microbial communities of SB are still in the early stages, in spite of their significance for improving reactor operation and design optimization.We have identified the following niches of research needs for SB in the near and mid term future, inter alia: (i) application of SB with sequential and simultaneous electron acceptors to soils polluted with contaminants other than hydrocarbons (i.e., pesticides, explosives, etc.), (ii) evaluation of the technical feasibility of triphasic SB that use innocuous solvents to help desorbing pollutants strongly attached to soils, and in turn, to enhance their biodegradation, (iii) gaining deeper insight of microbial communities present in SB with the intensified application of molecular biology tools such as PCR-DGGE, PCR-TGGE, ARDRA, etc., (iv) development of more representative ecotoxicological assays to better assess the effectiveness of a given bioremediation process.

New findings and setting the research agenda for soil and water conservation for sustainable land management

NASA Astrophysics Data System (ADS)

Keesstra, Saskia; Argaman, Eli; Gomez, Jose Alfonso; Quinton, John

2014-05-01

The session on soil and water conservation for sustainable land management provides insights into the current research producing viable measures for sustainable land management and enhancing the lands role as provider of ecosystem services. The insights into degradation processes are essential for designing and implementing feasible measures to mitigate against degradation of the land resource and adapt to the changing environment. Land degradation occurs due to multiple pressures on the land, such as population growth, land-use and land-cover changes, climate change and over exploitation of resources, often resulting in soil erosion due to water and wind, which occurs in many parts of the world. Understanding the processes of soil erosion by wind and water and the social and economic constraints faced by farmers forms an essential component of integrated land development projects. Soil and water conservation measures are only viable and sustainable if local environmental and socio-economic conditions are taken into account and proper enabling conditions and policies can be achieved. Land degradation increasingly occurs because land use, and farming systems are subject to rapid environmental and socio-economic changes without implementation of appropriate soil and water conservation technologies. Land use and its management are thus inextricably bound up with development; farmers must adapt in order to sustain the quality of their, and their families, lives. In broader perspective, soil and water conservation is needed as regulating ecosystem service and as a tool to enhance food security and biodiversity. Since land degradation occurs in many parts of the world and threatens food production and environmental stability it affects those countries with poorer soils and resilience in the agriculture sector first. Often these are the least developed countries. Therefore the work from researchers from developing countries together with knowledge from other disciplines and places is essential if we are to develop viable measures and approaches to soil and water conservation across the globe. In this paper we will provide an overview of the topics that are addressed in this session and give an overview of the current research in this field and using the insights we will aim to present a new research agenda oriented towards a significant impact in economic and environmental sustainability.

2015-16 ENSO Drove Tropical Soil Moisture Dynamics and Methane Fluxes

NASA Astrophysics Data System (ADS)

Aronson, E. L.; Dierick, D.; Botthoff, J.; Swanson, A. C.; Johnson, R. F.; Allen, M. F.

2017-12-01

The El Niño/Southern Oscillation Event (ENSO) cycle drives large-scale climatic trends globally. Within the new world tropics, El Niño brings dryer weather than the counterpart La Niña. Atmospheric methane growth rates have shown extreme variability over the past three decades. One proposed driver is the proportion of tropical land surface saturated, affecting methane production or consumption. We measured methane flux bimonthly through the transition of 2015-16 ENSO. The date of measurement, across El Niño and La Niña within the typical "rainy" and "dry" seasons, to be the most significant driver of methane flux. Soil moisture varied across this time period, and regulated methane flux. During the strong El Niño, extreme dry soil conditions occurred in a typical "rainy" season month reducing soil moisture. Wetter than usual soil conditions appeared during the "rainy" season month of the moderate La Niña. The dry El Niño soils corresponded to greater methane consumption by tropical forest soils, and a reduced local atmospheric column methane concentration. Conversely, the wet La Niña soils had lower methane consumption and higher local atmospheric column methane concentrations. The ENSO cycle is a strong driver of tropical terrestrial and wetland soil moisture conditions, and can regulate global atmospheric methane dynamics.

Regulation of potassium transport and signaling in plants.

PubMed

Wang, Yi; Wu, Wei-Hua

2017-10-01

As an essential macronutrient, potassium (K + ) plays crucial roles in diverse physiological processes during plant growth and development. The K + concentration in soils is relatively low and fluctuating. Plants are able to perceive external K + changes and generate chemical and physical signals in plant cells. The signals can be transducted across the plasma membrane and into the cytosol, and eventually regulates the downstream targets, particularly K + channels and transporters. As a result, K + homeostasis in plant cells is modulated, which facilitates plant adaptation to K + deficient conditions. This minireview focuses on the latest research progress in the diverse functions of K + channels and transporters as well as their regulatory mechanisms in plant response to low-K + stress. Copyright © 2017 Elsevier Ltd. All rights reserved.

Microbial colonization and controls in dryland systems

USGS Publications Warehouse

Pointing, Stephen B.; Belnap, Jayne

2012-01-01

Drylands constitute the most extensive terrestrial biome, covering more than one-third of the Earth's continental surface. In these environments, stress limits animal and plant life, so life forms that can survive desiccation and then resume growth following subsequent wetting assume the foremost role in ecosystem processes. In this Review, we describe how these organisms assemble in unique soil- and rock-surface communities to form a thin veneer of mostly microbial biomass across hot and cold deserts. These communities mediate inputs and outputs of gases, nutrients and water from desert surfaces, as well as regulating weathering, soil stability, and hydrological and nutrient cycles. The magnitude of regional and global desert-related environmental impacts is affected by these surface communities; here, we also discuss the challenges for incorporating the consideration of these communities and their effects into the management of dryland resources.

Role of the plasma membrane H+-ATPase in the regulation of organic acid exudation under aluminum toxicity and phosphorus deficiency

PubMed Central

Yu, Wenqian; Kan, Qi; Zhang, Jiarong; Zeng, Bingjie; Chen, Qi

2016-01-01

Aluminum (Al) toxicity and phosphorus (P) deficiency are 2 major limiting factors for plant growth and crop production in acidic soils. Organic acids exuded from roots have been generally regarded as a major resistance mechanism to Al toxicity and P deficiency. The exudation of organic acids is mediated by membrane-localized OA transporters, such as ALMT (Al-activated malate transporter) and MATE (multidrug and toxic compound extrusion). Beside on up-regulation expression of organic acids transporter gene, transcriptional, translational and post-translational regulation of the plasma membrane H+-ATPase are also involved in organic acid release process under Al toxicity and P deficiency. This mini-review summarizes the current knowledge about this field of study on the role of the plasma membrane H+-ATPase in organic acid exudation under Al toxicity and P deficiency conditions. PMID:26713714

Role of the plasma membrane H(+)-ATPase in the regulation of organic acid exudation under aluminum toxicity and phosphorus deficiency.

PubMed

Yu, Wenqian; Kan, Qi; Zhang, Jiarong; Zeng, Bingjie; Chen, Qi

2016-01-01

Aluminum (Al) toxicity and phosphorus (P) deficiency are 2 major limiting factors for plant growth and crop production in acidic soils. Organic acids exuded from roots have been generally regarded as a major resistance mechanism to Al toxicity and P deficiency. The exudation of organic acids is mediated by membrane-localized OA transporters, such as ALMT (Al-activated malate transporter) and MATE (multidrug and toxic compound extrusion). Beside on up-regulation expression of organic acids transporter gene, transcriptional, translational and post-translational regulation of the plasma membrane H(+)-ATPase are also involved in organic acid release process under Al toxicity and P deficiency. This mini-review summarizes the current knowledge about this field of study on the role of the plasma membrane H(+)-ATPase in organic acid exudation under Al toxicity and P deficiency conditions.

7 CFR 330.301 - Stone and quarry products from certain areas in Canada.

Code of Federal Regulations, 2010 CFR

2010-01-01

... AND PLANT HEALTH INSPECTION SERVICE, DEPARTMENT OF AGRICULTURE FEDERAL PLANT PEST REGULATIONS; GENERAL; PLANT PESTS; SOIL, STONE, AND QUARRY PRODUCTS; GARBAGE Movement of Soil, Stone, And Quarry Products...

EVALUATION OF A SOIL AMENDMENT PROCESS DEMONSTRATION FOR REDUCING THE BIOAVAILABILITY OF LEAD

EPA Science Inventory

The USEPA evaluated an in situ application of a soil amendment process at a residential site that was contaminated with lead. The goal of the evaluation was to determine if the soil amendment process resulted in lower concentrations of bioavailable lead in the contaminated soils...